Query 004302
Match_columns 762
No_of_seqs 350 out of 2668
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 20:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lor_A Thiol-disulfide isomera 99.9 8.5E-23 2.9E-27 193.8 13.2 141 82-229 3-157 (160)
2 3eyt_A Uncharacterized protein 99.9 1.6E-22 5.6E-27 191.7 13.2 136 87-229 5-154 (158)
3 3kya_A Putative phosphatase; s 99.9 2.5E-21 8.4E-26 219.8 21.1 211 263-511 245-478 (496)
4 4g2e_A Peroxiredoxin; redox pr 99.9 3.4E-22 1.2E-26 192.7 9.3 126 86-225 8-156 (157)
5 3kij_A Probable glutathione pe 99.9 2.4E-21 8.3E-26 189.7 14.8 137 85-229 15-172 (180)
6 2rli_A SCO2 protein homolog, m 99.9 3.9E-21 1.3E-25 184.6 15.7 135 86-230 3-167 (171)
7 3fw2_A Thiol-disulfide oxidore 99.9 3.4E-21 1.2E-25 182.0 14.6 128 85-228 8-149 (150)
8 2i3y_A Epididymal secretory gl 99.9 1.5E-21 5.1E-26 199.2 12.9 134 87-229 34-213 (215)
9 3fvz_A Peptidyl-glycine alpha- 99.9 1.7E-19 5.8E-24 191.2 29.2 229 260-560 19-280 (329)
10 4hw6_A Hypothetical protein, I 99.9 1.1E-20 3.8E-25 211.0 20.5 190 263-507 226-432 (433)
11 3lwa_A Secreted thiol-disulfid 99.9 3.8E-21 1.3E-25 187.8 13.7 132 85-228 34-182 (183)
12 2f8a_A Glutathione peroxidase 99.8 2.9E-21 9.9E-26 195.4 13.0 133 88-228 26-208 (208)
13 2p5q_A Glutathione peroxidase 99.8 2.7E-21 9.3E-26 185.2 12.1 134 87-228 11-169 (170)
14 3ewl_A Uncharacterized conserv 99.8 1.9E-21 6.4E-26 181.2 10.6 126 86-227 5-141 (142)
15 3kya_A Putative phosphatase; s 99.8 4.8E-21 1.7E-25 217.4 15.9 158 264-437 309-483 (496)
16 3raz_A Thioredoxin-related pro 99.8 5.8E-21 2E-25 180.6 13.6 130 86-230 3-143 (151)
17 2ggt_A SCO1 protein homolog, m 99.8 4.9E-21 1.7E-25 182.4 12.9 132 87-228 2-162 (164)
18 2f9s_A Thiol-disulfide oxidore 99.8 2.8E-21 9.4E-26 182.2 11.0 134 87-233 5-144 (151)
19 2r37_A Glutathione peroxidase 99.8 7.6E-21 2.6E-25 192.6 14.8 134 88-230 17-196 (207)
20 3dwv_A Glutathione peroxidase- 99.8 1.6E-21 5.4E-26 192.7 9.4 134 87-228 25-184 (187)
21 2v1m_A Glutathione peroxidase; 99.8 5.4E-21 1.9E-25 182.9 12.6 134 87-228 10-168 (169)
22 4fo5_A Thioredoxin-like protei 99.8 4.1E-21 1.4E-25 180.0 11.3 122 86-224 11-142 (143)
23 3cmi_A Peroxiredoxin HYR1; thi 99.8 3.3E-21 1.1E-25 186.8 10.1 132 88-228 12-169 (171)
24 3eur_A Uncharacterized protein 99.8 6.7E-21 2.3E-25 178.3 11.7 123 85-223 8-141 (142)
25 2lrn_A Thiol:disulfide interch 99.8 1E-20 3.4E-25 179.1 12.3 131 87-233 8-147 (152)
26 4evm_A Thioredoxin family prot 99.8 1.7E-20 5.8E-25 170.9 13.1 131 87-225 1-137 (138)
27 1lu4_A Soluble secreted antige 99.8 1.1E-20 3.9E-25 173.4 12.0 125 88-226 4-135 (136)
28 2vup_A Glutathione peroxidase- 99.8 1.2E-20 4E-25 186.7 12.8 135 87-229 27-187 (190)
29 4gqc_A Thiol peroxidase, perox 99.8 2.2E-21 7.4E-26 188.9 7.3 129 86-228 9-161 (164)
30 2cvb_A Probable thiol-disulfid 99.8 1.8E-20 6.1E-25 183.8 13.8 138 87-232 12-164 (188)
31 2p31_A CL683, glutathione pero 99.8 7.1E-21 2.4E-25 186.8 10.0 132 87-226 28-180 (181)
32 1jfu_A Thiol:disulfide interch 99.8 1.1E-20 3.7E-25 184.8 11.3 133 86-230 38-183 (186)
33 2l5o_A Putative thioredoxin; s 99.8 2.3E-20 8E-25 175.6 13.0 136 85-232 5-146 (153)
34 3fvz_A Peptidyl-glycine alpha- 99.8 2E-19 7E-24 190.6 21.7 207 261-530 87-299 (329)
35 3or5_A Thiol:disulfide interch 99.8 2.2E-20 7.5E-25 177.7 12.8 134 86-233 12-157 (165)
36 1zzo_A RV1677; thioredoxin fol 99.8 2.8E-20 9.4E-25 170.2 12.5 127 87-227 4-135 (136)
37 3hcz_A Possible thiol-disulfid 99.8 2.5E-20 8.6E-25 173.5 12.5 130 85-227 8-146 (148)
38 3fkf_A Thiol-disulfide oxidore 99.8 5.3E-20 1.8E-24 171.3 14.5 127 86-228 9-147 (148)
39 2gs3_A PHGPX, GPX-4, phospholi 99.8 1.4E-20 4.7E-25 185.4 10.9 132 87-226 28-185 (185)
40 2b5x_A YKUV protein, TRXY; thi 99.8 2.6E-20 9E-25 173.1 11.8 133 88-228 7-146 (148)
41 3tc9_A Hypothetical hydrolase; 99.8 1.4E-19 4.6E-24 201.7 19.4 191 263-507 224-429 (430)
42 3p5b_L Low density lipoprotein 99.8 1E-18 3.6E-23 192.7 26.2 225 263-578 110-343 (400)
43 3u5r_E Uncharacterized protein 99.8 2.5E-20 8.5E-25 189.0 12.1 138 86-231 36-191 (218)
44 3ha9_A Uncharacterized thiored 99.8 3.3E-20 1.1E-24 177.6 12.0 130 88-227 17-164 (165)
45 2obi_A PHGPX, GPX-4, phospholi 99.8 1.3E-20 4.3E-25 184.9 9.2 131 87-225 26-182 (183)
46 2yzh_A Probable thiol peroxida 99.8 4.6E-20 1.6E-24 178.9 13.0 126 86-226 25-171 (171)
47 3kh7_A Thiol:disulfide interch 99.8 4.5E-20 1.5E-24 180.5 12.9 133 83-230 31-170 (176)
48 1psq_A Probable thiol peroxida 99.8 3.4E-20 1.2E-24 178.8 11.6 125 86-224 20-162 (163)
49 3drn_A Peroxiredoxin, bacterio 99.8 3.1E-20 1.1E-24 178.4 11.1 129 86-228 6-150 (161)
50 2ywi_A Hypothetical conserved 99.8 2.2E-20 7.4E-25 183.9 10.0 138 87-232 23-179 (196)
51 3erw_A Sporulation thiol-disul 99.8 1E-19 3.6E-24 168.4 13.6 127 85-222 12-144 (145)
52 1xzo_A BSSCO, hypothetical pro 99.8 1.8E-20 6.3E-25 180.4 8.8 132 87-228 12-173 (174)
53 1ijq_A LDL receptor, low-densi 99.8 4.2E-18 1.4E-22 181.3 27.7 224 263-577 28-260 (316)
54 3kcm_A Thioredoxin family prot 99.8 7.6E-20 2.6E-24 172.3 12.7 136 85-232 5-148 (154)
55 4hw6_A Hypothetical protein, I 99.8 1E-18 3.5E-23 195.1 23.8 233 262-554 136-430 (433)
56 3m0c_C LDL receptor, low-densi 99.8 2.5E-18 8.5E-23 205.5 28.6 225 263-578 422-655 (791)
57 3v65_B Low-density lipoprotein 99.8 1.8E-18 6.3E-23 189.6 25.2 224 263-578 114-341 (386)
58 1we0_A Alkyl hydroperoxide red 99.8 1.1E-19 3.6E-24 178.9 13.8 149 87-252 6-179 (187)
59 2k6v_A Putative cytochrome C o 99.8 2.5E-20 8.5E-25 178.8 9.0 127 87-225 15-171 (172)
60 1n8j_A AHPC, alkyl hydroperoxi 99.8 5.4E-20 1.8E-24 182.1 11.0 148 87-251 6-177 (186)
61 2hyx_A Protein DIPZ; thioredox 99.8 1E-19 3.5E-24 198.6 14.3 136 87-230 56-202 (352)
62 2lrt_A Uncharacterized protein 99.8 5.7E-20 1.9E-24 175.2 10.7 118 86-218 13-139 (152)
63 1q98_A Thiol peroxidase, TPX; 99.8 3.8E-20 1.3E-24 179.0 9.4 123 87-223 22-162 (165)
64 3gkn_A Bacterioferritin comigr 99.8 6.5E-20 2.2E-24 175.5 10.6 123 85-221 10-153 (163)
65 2lja_A Putative thiol-disulfid 99.8 2.1E-19 7.1E-24 169.0 13.8 133 87-232 8-148 (152)
66 3hrp_A Uncharacterized protein 99.8 2.3E-18 7.8E-23 190.2 24.1 189 263-507 217-409 (409)
67 3ixr_A Bacterioferritin comigr 99.8 4E-20 1.4E-24 181.8 8.9 124 88-225 31-176 (179)
68 3gl3_A Putative thiol:disulfid 99.8 1.6E-19 5.4E-24 169.8 12.6 130 86-229 7-144 (152)
69 3v64_C Agrin; beta propeller, 99.8 3.3E-18 1.1E-22 185.1 24.6 224 263-578 71-298 (349)
70 2c0d_A Thioredoxin peroxidase 99.8 1.3E-19 4.4E-24 185.3 11.9 130 85-228 28-185 (221)
71 2h30_A Thioredoxin, peptide me 99.8 5E-20 1.7E-24 175.3 8.1 129 92-228 22-157 (164)
72 3ia1_A THIO-disulfide isomeras 99.8 6.1E-20 2.1E-24 173.3 8.3 132 87-231 10-148 (154)
73 1xvw_A Hypothetical protein RV 99.8 1.9E-19 6.5E-24 171.5 11.5 116 86-215 13-144 (160)
74 3tc9_A Hypothetical hydrolase; 99.8 6.1E-18 2.1E-22 188.4 24.8 235 261-555 133-428 (430)
75 1zof_A Alkyl hydroperoxide-red 99.8 3.1E-19 1E-23 177.4 12.2 148 86-251 5-181 (198)
76 1xvq_A Thiol peroxidase; thior 99.8 1.8E-19 6.2E-24 176.1 10.1 128 86-228 22-166 (175)
77 1npe_A Nidogen, entactin; glyc 99.8 1.6E-17 5.5E-22 170.3 24.9 206 264-562 35-243 (267)
78 1kng_A Thiol:disulfide interch 99.8 4E-19 1.4E-23 167.4 11.9 129 87-229 13-154 (156)
79 2b7k_A SCO1 protein; metalloch 99.8 2.4E-19 8.2E-24 179.3 10.7 132 88-229 21-181 (200)
80 3hrp_A Uncharacterized protein 99.8 2.3E-18 8E-23 190.1 19.5 138 266-424 267-408 (409)
81 2jsy_A Probable thiol peroxida 99.8 7.5E-20 2.6E-24 176.1 6.1 127 86-226 22-166 (167)
82 2ls5_A Uncharacterized protein 99.7 1E-20 3.5E-25 180.1 0.0 132 87-232 12-153 (159)
83 3zrd_A Thiol peroxidase; oxido 99.8 3E-19 1E-23 179.4 10.4 127 85-225 55-199 (200)
84 3p7x_A Probable thiol peroxida 99.8 2.7E-19 9.2E-24 173.0 9.6 111 86-211 24-147 (166)
85 2bmx_A Alkyl hydroperoxidase C 99.8 5.8E-19 2E-23 175.2 12.0 127 87-227 9-170 (195)
86 2pn8_A Peroxiredoxin-4; thiore 99.8 4.2E-19 1.4E-23 179.8 11.2 129 86-228 23-178 (211)
87 1uul_A Tryparedoxin peroxidase 99.8 6.2E-19 2.1E-23 176.1 10.9 149 86-252 10-186 (202)
88 3m0c_C LDL receptor, low-densi 99.8 1.5E-17 5.3E-22 198.7 24.9 168 263-514 469-639 (791)
89 3sov_A LRP-6, low-density lipo 99.8 2.3E-17 7.8E-22 176.9 23.6 223 263-578 33-261 (318)
90 2b1k_A Thiol:disulfide interch 99.8 8.9E-19 3E-23 168.2 11.2 130 85-229 25-162 (168)
91 3v64_C Agrin; beta propeller, 99.8 1.8E-17 6.2E-22 179.3 22.6 167 263-515 114-283 (349)
92 3p5b_L Low density lipoprotein 99.8 1.9E-17 6.4E-22 182.7 22.9 169 263-515 157-328 (400)
93 1qmv_A Human thioredoxin perox 99.8 9.6E-19 3.3E-23 173.9 11.2 148 86-251 9-183 (197)
94 3sov_A LRP-6, low-density lipo 99.8 2.3E-17 7.9E-22 176.8 22.7 166 263-514 77-245 (318)
95 2h01_A 2-Cys peroxiredoxin; th 99.8 1.3E-18 4.5E-23 172.0 12.0 128 87-228 5-160 (192)
96 3v65_B Low-density lipoprotein 99.8 1.8E-17 6.1E-22 181.7 22.1 167 263-515 157-326 (386)
97 2i81_A 2-Cys peroxiredoxin; st 99.8 1.3E-18 4.6E-23 176.3 11.9 130 85-228 24-181 (213)
98 1ijq_A LDL receptor, low-densi 99.8 5.3E-17 1.8E-21 172.8 24.6 169 263-515 75-246 (316)
99 2a4v_A Peroxiredoxin DOT5; yea 99.8 5.8E-19 2E-23 169.0 8.4 126 86-226 11-150 (159)
100 3ztl_A Thioredoxin peroxidase; 99.8 3.2E-19 1.1E-23 181.7 6.7 128 85-226 43-197 (222)
101 4hde_A SCO1/SENC family lipopr 99.8 2E-18 6.8E-23 168.8 11.5 131 86-226 10-169 (170)
102 1npe_A Nidogen, entactin; glyc 99.8 5.7E-17 1.9E-21 166.2 22.5 165 263-514 77-245 (267)
103 3me7_A Putative uncharacterize 99.8 2.3E-18 8E-23 167.8 10.7 133 87-229 6-164 (170)
104 1zye_A Thioredoxin-dependent p 99.7 5.3E-18 1.8E-22 172.6 12.7 148 87-252 32-206 (220)
105 2wfc_A Peroxiredoxin 5, PRDX5; 99.7 2E-18 6.7E-23 168.8 8.4 111 87-212 8-142 (167)
106 3hdc_A Thioredoxin family prot 99.7 2.6E-18 8.7E-23 163.8 8.7 116 85-216 18-139 (158)
107 3qpm_A Peroxiredoxin; oxidored 99.7 1.6E-18 5.6E-23 179.2 7.9 129 85-227 51-206 (240)
108 1tp9_A Peroxiredoxin, PRX D (t 99.7 1.1E-18 3.9E-23 168.5 6.1 111 87-212 9-146 (162)
109 4a0p_A LRP6, LRP-6, low-densit 99.7 1.9E-16 6.5E-21 184.9 25.4 221 263-578 35-260 (628)
110 3tjj_A Peroxiredoxin-4; thiore 99.7 5.3E-18 1.8E-22 177.1 10.9 129 85-227 65-220 (254)
111 3s94_A LRP-6, low-density lipo 99.7 1.4E-16 4.9E-21 185.5 24.2 224 262-578 37-266 (619)
112 3uma_A Hypothetical peroxiredo 99.7 1.6E-18 5.5E-23 172.5 6.3 124 86-224 30-183 (184)
113 2pwj_A Mitochondrial peroxired 99.7 1.7E-18 6E-23 169.5 6.3 112 87-213 12-155 (171)
114 3mng_A Peroxiredoxin-5, mitoch 99.7 4.8E-18 1.7E-22 167.5 8.2 125 85-224 18-172 (173)
115 3s94_A LRP-6, low-density lipo 99.7 4.3E-16 1.5E-20 181.5 26.0 204 262-558 346-552 (619)
116 3keb_A Probable thiol peroxida 99.7 2.8E-17 9.6E-22 168.8 13.4 131 86-232 26-181 (224)
117 1n7d_A LDL receptor, low-densi 99.7 2.6E-17 9E-22 194.2 13.8 229 263-577 404-636 (699)
118 1nm3_A Protein HI0572; hybrid, 99.7 1.1E-17 3.8E-22 171.5 8.0 125 86-225 7-162 (241)
119 1prx_A HORF6; peroxiredoxin, h 99.7 2.2E-17 7.6E-22 169.0 9.9 128 86-228 9-170 (224)
120 1q7f_A NHL, brain tumor CG1071 99.7 2.9E-15 1E-19 153.4 25.2 194 261-536 26-221 (286)
121 1i5g_A Tryparedoxin II; electr 99.7 6.3E-18 2.2E-22 158.2 4.1 110 88-210 7-127 (144)
122 1xcc_A 1-Cys peroxiredoxin; un 99.7 2.8E-17 9.6E-22 167.8 8.8 150 86-254 7-189 (220)
123 2v2g_A Peroxiredoxin 6; oxidor 99.7 3.3E-17 1.1E-21 169.0 8.9 128 86-228 7-166 (233)
124 4a0p_A LRP6, LRP-6, low-densit 99.7 5.4E-15 1.9E-19 172.6 26.8 212 262-560 337-552 (628)
125 1q7f_A NHL, brain tumor CG1071 99.7 5.1E-15 1.7E-19 151.6 23.3 170 262-515 74-245 (286)
126 1o8x_A Tryparedoxin, TRYX, TXN 99.7 1.8E-17 6.2E-22 155.6 4.0 109 88-210 8-127 (146)
127 2lus_A Thioredoxion; CR-Trp16, 99.5 5.1E-18 1.8E-22 157.5 0.0 108 89-209 5-125 (143)
128 3s9f_A Tryparedoxin; thioredox 99.6 1.5E-17 5.1E-22 161.1 1.4 109 89-211 29-148 (165)
129 1o73_A Tryparedoxin; electron 99.6 2.9E-17 9.8E-22 153.2 2.4 109 88-210 8-127 (144)
130 4eo3_A Bacterioferritin comigr 99.6 6.1E-16 2.1E-20 166.9 12.3 125 88-228 4-140 (322)
131 1n7d_A LDL receptor, low-densi 99.6 8.5E-16 2.9E-20 181.3 14.3 167 262-512 450-618 (699)
132 3a2v_A Probable peroxiredoxin; 99.6 3.7E-16 1.3E-20 163.0 8.0 128 86-228 9-163 (249)
133 3sbc_A Peroxiredoxin TSA1; alp 99.6 3.8E-15 1.3E-19 152.1 9.9 129 86-228 27-182 (216)
134 2p4o_A Hypothetical protein; p 99.6 4.6E-13 1.6E-17 140.7 24.9 164 265-508 32-198 (306)
135 2fp8_A Strictosidine synthase; 99.6 5.4E-14 1.8E-18 148.2 17.3 176 262-509 16-217 (322)
136 1rwi_B Serine/threonine-protei 99.5 1.1E-13 3.6E-18 139.7 18.0 163 263-513 65-227 (270)
137 1rwi_B Serine/threonine-protei 99.5 1.9E-13 6.4E-18 137.9 19.3 166 260-513 18-185 (270)
138 3tue_A Tryparedoxin peroxidase 99.5 1.6E-14 5.6E-19 147.7 11.4 148 86-251 30-205 (219)
139 2fp8_A Strictosidine synthase; 99.5 4.3E-13 1.5E-17 141.3 22.4 172 263-516 78-277 (322)
140 3dsm_A Uncharacterized protein 99.5 3.7E-12 1.3E-16 135.3 25.1 215 264-533 83-322 (328)
141 2qc5_A Streptogramin B lactona 99.5 2.8E-11 9.5E-16 122.8 27.5 164 263-514 60-223 (300)
142 3hxs_A Thioredoxin, TRXP; elec 99.4 2.2E-13 7.5E-18 126.9 9.0 100 96-228 39-140 (141)
143 2z2n_A Virginiamycin B lyase; 99.4 3.8E-11 1.3E-15 121.7 26.2 164 264-515 98-261 (299)
144 2ju5_A Thioredoxin disulfide i 99.4 7E-14 2.4E-18 133.9 5.4 118 85-228 25-153 (154)
145 2qc5_A Streptogramin B lactona 99.4 1.8E-11 6.3E-16 124.1 23.2 163 264-514 103-265 (300)
146 2fwh_A Thiol:disulfide interch 99.4 6.1E-14 2.1E-18 130.8 4.4 101 97-225 20-126 (134)
147 4f82_A Thioredoxin reductase; 99.4 1.2E-13 4.1E-18 136.9 6.5 110 99-223 37-172 (176)
148 2l57_A Uncharacterized protein 99.4 7.6E-13 2.6E-17 121.1 11.3 98 100-229 18-119 (126)
149 3e5z_A Putative gluconolactona 99.4 1.8E-10 6.3E-15 118.7 26.9 163 263-511 26-206 (296)
150 2z2n_A Virginiamycin B lyase; 99.4 7.5E-11 2.6E-15 119.5 22.7 158 264-510 140-297 (299)
151 2pu9_C TRX-F, thioredoxin F-ty 99.3 3.5E-12 1.2E-16 113.9 10.6 92 103-226 19-110 (111)
152 3ul3_B Thioredoxin, thioredoxi 99.3 3.5E-12 1.2E-16 117.5 9.5 97 95-224 29-127 (128)
153 3dsm_A Uncharacterized protein 99.3 1.9E-10 6.4E-15 122.1 23.8 248 265-574 44-319 (328)
154 3zzx_A Thioredoxin; oxidoreduc 99.3 3.4E-12 1.2E-16 115.3 8.8 88 104-224 16-103 (105)
155 3dr2_A Exported gluconolactona 99.3 1.1E-10 3.7E-15 121.9 21.6 164 263-512 43-228 (305)
156 3qfa_C Thioredoxin; protein-pr 99.3 5.2E-12 1.8E-16 114.7 9.2 89 105-226 28-116 (116)
157 3fk8_A Disulphide isomerase; A 99.3 2.1E-12 7.2E-17 119.2 6.5 99 102-226 23-132 (133)
158 3gix_A Thioredoxin-like protei 99.3 3.6E-12 1.2E-16 121.8 8.1 92 107-230 22-124 (149)
159 2qe8_A Uncharacterized protein 99.3 1.5E-10 5.1E-15 123.5 21.5 223 262-536 64-305 (343)
160 3e5z_A Putative gluconolactona 99.3 2.1E-10 7.3E-15 118.2 21.9 163 265-515 69-253 (296)
161 1faa_A Thioredoxin F; electron 99.3 4E-12 1.4E-16 115.8 7.6 90 105-226 34-123 (124)
162 3g4e_A Regucalcin; six bladed 99.3 5.8E-10 2E-14 116.1 24.8 165 261-512 9-186 (297)
163 3f3q_A Thioredoxin-1; His TAG, 99.3 8E-12 2.7E-16 112.1 9.0 87 106-225 22-108 (109)
164 3f9u_A Putative exported cytoc 99.3 6.3E-13 2.1E-17 128.5 1.7 120 99-229 38-168 (172)
165 3d22_A TRXH4, thioredoxin H-ty 99.3 3.7E-12 1.3E-16 118.5 6.7 95 101-228 39-133 (139)
166 1z6n_A Hypothetical protein PA 99.3 2.1E-12 7.3E-17 126.6 4.6 93 102-225 48-141 (167)
167 2qe8_A Uncharacterized protein 99.3 4.6E-10 1.6E-14 119.6 22.9 188 265-506 17-224 (343)
168 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.1E-10 7.1E-15 117.9 19.2 165 263-508 115-299 (314)
169 3p2a_A Thioredoxin 2, putative 99.2 2.2E-11 7.6E-16 114.7 10.3 103 94-228 41-144 (148)
170 3emx_A Thioredoxin; structural 99.2 8.5E-12 2.9E-16 116.5 7.3 97 110-230 33-129 (135)
171 4euy_A Uncharacterized protein 99.2 1.2E-11 4E-16 109.7 7.9 88 107-226 17-104 (105)
172 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 3.8E-10 1.3E-14 115.9 20.1 168 262-511 15-211 (314)
173 3vgz_A Uncharacterized protein 99.2 1.2E-08 4E-13 105.9 31.2 170 265-512 41-219 (353)
174 1xfl_A Thioredoxin H1; AT3G510 99.2 2.4E-11 8E-16 111.9 9.2 88 106-226 36-123 (124)
175 1dby_A Chloroplast thioredoxin 99.2 4.2E-11 1.4E-15 105.6 10.3 88 107-226 18-106 (107)
176 2p4o_A Hypothetical protein; p 99.2 6.4E-10 2.2E-14 116.7 21.1 166 266-510 73-244 (306)
177 2l5l_A Thioredoxin; structural 99.2 3.7E-11 1.3E-15 111.9 10.0 92 107-231 37-130 (136)
178 1t00_A Thioredoxin, TRX; redox 99.2 3.4E-11 1.2E-15 107.2 9.0 89 107-227 22-111 (112)
179 1sen_A Thioredoxin-like protei 99.2 1.2E-12 4E-17 127.0 -0.7 115 88-232 27-153 (164)
180 1ep7_A Thioredoxin CH1, H-type 99.2 3.7E-11 1.3E-15 106.8 9.2 87 108-227 24-111 (112)
181 2lst_A Thioredoxin; structural 98.8 1.5E-12 5.1E-17 119.6 0.0 111 91-232 3-121 (130)
182 1r26_A Thioredoxin; redox-acti 99.2 4.5E-11 1.5E-15 110.6 9.7 89 107-228 36-124 (125)
183 3die_A Thioredoxin, TRX; elect 99.2 3.6E-11 1.2E-15 105.4 8.4 87 107-225 18-105 (106)
184 1syr_A Thioredoxin; SGPP, stru 99.2 4.3E-11 1.5E-15 107.3 9.0 87 107-226 25-111 (112)
185 2vlu_A Thioredoxin, thioredoxi 99.2 5.2E-11 1.8E-15 107.8 9.5 88 107-227 33-120 (122)
186 2o8v_B Thioredoxin 1; disulfid 99.2 6.7E-11 2.3E-15 109.6 10.4 84 107-226 39-127 (128)
187 2voc_A Thioredoxin; electron t 99.2 3.6E-11 1.2E-15 108.0 8.1 89 107-228 16-106 (112)
188 3vgz_A Uncharacterized protein 99.2 6.7E-09 2.3E-13 107.7 25.5 174 266-512 90-266 (353)
189 2vim_A Thioredoxin, TRX; thior 99.2 6E-11 2.1E-15 103.6 8.4 89 104-225 15-103 (104)
190 2kuc_A Putative disulphide-iso 99.2 2.1E-11 7.1E-16 111.7 5.6 100 100-229 19-123 (130)
191 1w4v_A Thioredoxin, mitochondr 99.2 1.2E-10 4.2E-15 105.7 10.6 88 107-226 30-118 (119)
192 1x5d_A Protein disulfide-isome 99.2 1E-10 3.5E-15 107.1 10.0 94 107-233 24-123 (133)
193 3m9j_A Thioredoxin; oxidoreduc 99.2 5.5E-11 1.9E-15 104.3 7.9 90 104-226 16-105 (105)
194 2oe3_A Thioredoxin-3; electron 99.2 6.4E-11 2.2E-15 107.4 8.4 85 107-224 29-113 (114)
195 1fb6_A Thioredoxin M; electron 99.1 1.2E-10 4.1E-15 101.9 9.8 88 107-226 17-105 (105)
196 3tco_A Thioredoxin (TRXA-1); d 99.1 1.1E-10 3.7E-15 102.6 9.6 88 107-226 20-108 (109)
197 3qou_A Protein YBBN; thioredox 99.1 1.1E-10 3.7E-15 121.8 10.7 91 104-226 22-113 (287)
198 1gh2_A Thioredoxin-like protei 99.1 1.5E-10 5.2E-15 102.5 10.1 88 106-226 19-106 (107)
199 1ti3_A Thioredoxin H, PTTRXH1; 99.1 1.9E-10 6.4E-15 102.2 10.6 90 105-227 23-112 (113)
200 3dr2_A Exported gluconolactona 99.1 1.1E-09 3.9E-14 114.1 18.2 166 265-515 86-274 (305)
201 1nsw_A Thioredoxin, TRX; therm 99.1 4.7E-11 1.6E-15 104.9 6.5 87 107-226 16-104 (105)
202 2wz9_A Glutaredoxin-3; protein 99.1 1.5E-10 5.2E-15 110.2 10.6 91 106-230 30-121 (153)
203 1qgv_A Spliceosomal protein U5 99.1 1.3E-10 4.5E-15 110.0 9.6 88 107-229 22-123 (142)
204 2trx_A Thioredoxin; electron t 99.1 1.6E-10 5.3E-15 102.0 9.5 88 107-226 19-107 (108)
205 2ism_A Putative oxidoreductase 99.1 1.2E-09 4E-14 118.3 18.3 125 263-426 29-178 (352)
206 3hz4_A Thioredoxin; NYSGXRC, P 99.1 1.4E-10 4.6E-15 108.8 9.4 91 107-229 23-114 (140)
207 3cxg_A Putative thioredoxin; m 99.1 3E-11 1E-15 112.7 4.8 93 102-228 34-130 (133)
208 2xc2_A Thioredoxinn; oxidoredu 99.1 1.1E-10 3.9E-15 105.2 8.5 88 104-225 29-116 (117)
209 3dxb_A Thioredoxin N-terminall 99.1 9.8E-11 3.4E-15 118.6 9.0 107 89-230 10-121 (222)
210 2dg1_A DRP35, lactonase; beta 99.1 3.4E-09 1.2E-13 110.4 21.0 159 263-507 43-212 (333)
211 3d6i_A Monothiol glutaredoxin- 99.1 1.4E-10 4.7E-15 103.5 8.8 90 106-228 19-110 (112)
212 1zma_A Bacterocin transport ac 99.1 7.3E-11 2.5E-15 106.8 7.1 90 107-223 28-117 (118)
213 1thx_A Thioredoxin, thioredoxi 99.1 3.2E-10 1.1E-14 100.8 11.2 89 106-227 23-113 (115)
214 3g4e_A Regucalcin; six bladed 99.1 1.5E-09 5.3E-14 112.9 18.0 122 263-430 96-233 (297)
215 2dml_A Protein disulfide-isome 99.1 2.9E-10 9.8E-15 104.1 10.9 91 107-229 34-126 (130)
216 2av4_A Thioredoxin-like protei 99.1 1.5E-10 5E-15 112.6 9.1 88 107-229 40-141 (160)
217 2ppt_A Thioredoxin-2; thiredox 99.1 1.1E-10 3.6E-15 112.2 8.0 92 106-229 62-154 (155)
218 2vm1_A Thioredoxin, thioredoxi 99.1 2.3E-10 8E-15 102.3 9.5 91 106-229 26-116 (118)
219 2e0q_A Thioredoxin; electron t 99.1 3.1E-10 1.1E-14 98.4 10.0 89 107-227 15-103 (104)
220 3a9g_A Putative uncharacterize 99.1 1.9E-09 6.4E-14 117.0 18.3 124 263-426 27-178 (354)
221 3gnj_A Thioredoxin domain prot 99.1 3.4E-10 1.1E-14 100.2 10.1 89 107-227 21-110 (111)
222 1xwb_A Thioredoxin; dimerizati 99.1 2.8E-10 9.7E-15 99.7 9.3 88 105-225 17-105 (106)
223 3no2_A Uncharacterized protein 99.1 1E-08 3.6E-13 106.9 22.4 119 268-430 80-199 (276)
224 1xiy_A Peroxiredoxin, pfaop; a 99.1 2.2E-10 7.4E-15 114.0 9.1 98 99-211 33-153 (182)
225 3hfq_A Uncharacterized protein 99.1 3E-08 1E-12 103.8 25.9 240 264-574 85-337 (347)
226 2dj1_A Protein disulfide-isome 99.1 2.4E-10 8.1E-15 106.0 8.4 90 106-229 32-126 (140)
227 2dbc_A PDCL2, unnamed protein 99.1 3E-10 1E-14 106.3 8.8 84 107-225 29-119 (135)
228 2iwa_A Glutamine cyclotransfer 99.1 2.5E-08 8.4E-13 104.9 24.3 167 265-518 21-192 (266)
229 2l6c_A Thioredoxin; oxidoreduc 99.1 3.6E-10 1.2E-14 101.4 8.8 88 107-226 18-105 (110)
230 2yzu_A Thioredoxin; redox prot 99.1 4.4E-10 1.5E-14 98.5 9.0 90 107-228 17-107 (109)
231 2i4a_A Thioredoxin; acidophIle 99.0 3.1E-10 1.1E-14 99.6 7.9 87 106-225 18-106 (107)
232 3scy_A Hypothetical bacterial 99.0 2.3E-08 7.9E-13 105.5 23.5 174 263-514 153-345 (361)
233 3hfq_A Uncharacterized protein 99.0 1.6E-08 5.5E-13 105.9 22.0 180 263-515 139-326 (347)
234 2djj_A PDI, protein disulfide- 99.0 3.6E-10 1.2E-14 101.9 8.1 93 100-227 16-117 (121)
235 2j23_A Thioredoxin; immune pro 99.0 4.3E-10 1.5E-14 102.6 8.2 87 107-226 32-120 (121)
236 2qsi_A Putative hydrogenase ex 99.0 2.5E-10 8.5E-15 108.7 6.4 93 108-232 33-128 (137)
237 3u4y_A Uncharacterized protein 99.0 1.5E-08 5.2E-13 104.7 20.4 175 265-514 128-310 (331)
238 3apq_A DNAJ homolog subfamily 99.0 2.4E-10 8.1E-15 114.5 6.3 106 92-229 98-204 (210)
239 1fo5_A Thioredoxin; disulfide 99.0 1.4E-09 4.6E-14 91.8 9.5 78 109-225 3-84 (85)
240 2i1u_A Thioredoxin, TRX, MPT46 99.0 3.5E-10 1.2E-14 101.8 6.0 88 107-226 29-117 (121)
241 3mbr_X Glutamine cyclotransfer 99.0 7.9E-08 2.7E-12 99.8 24.3 165 265-518 21-190 (243)
242 2xhf_A Peroxiredoxin 5; oxidor 99.0 7.1E-10 2.4E-14 109.3 8.4 111 87-212 19-152 (171)
243 1wmj_A Thioredoxin H-type; str 99.0 6.9E-11 2.4E-15 107.8 0.9 92 106-230 34-125 (130)
244 2dj0_A Thioredoxin-related tra 99.0 1.7E-10 5.9E-15 107.4 3.6 93 104-222 22-116 (137)
245 1v98_A Thioredoxin; oxidoreduc 99.0 1.8E-09 6E-14 100.7 10.4 88 108-227 50-138 (140)
246 3uvt_A Thioredoxin domain-cont 99.0 1.6E-09 5.6E-14 95.6 9.5 85 108-224 21-109 (111)
247 1oaz_A Thioredoxin 1; immune s 99.0 5.7E-10 1.9E-14 102.7 6.6 89 107-226 20-122 (123)
248 3no2_A Uncharacterized protein 99.0 2.7E-08 9.1E-13 103.8 20.1 163 267-515 39-203 (276)
249 3aps_A DNAJ homolog subfamily 99.0 5.4E-10 1.9E-14 101.1 6.2 91 107-230 20-116 (122)
250 2dj3_A Protein disulfide-isome 99.0 1.2E-09 4.3E-14 100.2 8.6 88 107-229 24-120 (133)
251 2dg1_A DRP35, lactonase; beta 99.0 2.3E-08 8E-13 104.0 19.0 170 265-515 87-270 (333)
252 2ism_A Putative oxidoreductase 98.9 1.9E-08 6.6E-13 108.7 18.2 199 263-509 73-298 (352)
253 1nho_A Probable thioredoxin; b 98.9 1.2E-09 4.1E-14 92.1 6.7 78 110-226 3-84 (85)
254 1x5e_A Thioredoxin domain cont 98.9 1.3E-09 4.3E-14 99.6 7.3 89 107-230 22-113 (126)
255 2f51_A Thioredoxin; electron t 98.9 2.1E-09 7E-14 97.9 8.5 86 107-225 22-111 (118)
256 3nok_A Glutaminyl cyclase; bet 98.9 7.2E-08 2.5E-12 101.3 21.1 161 268-518 58-221 (268)
257 2iwa_A Glutamine cyclotransfer 98.9 3E-08 1E-12 104.2 18.0 171 265-508 66-237 (266)
258 1l0q_A Surface layer protein; 98.9 2.1E-07 7.2E-12 98.4 24.5 159 266-512 33-193 (391)
259 3u4y_A Uncharacterized protein 98.9 7.1E-08 2.4E-12 99.7 19.8 166 265-515 83-259 (331)
260 2g8s_A Glucose/sorbosone dehyd 98.9 1.7E-07 5.8E-12 101.4 23.3 130 263-427 16-174 (353)
261 2p9w_A MAL S 1 allergenic prot 98.9 5.9E-08 2E-12 104.9 19.3 183 263-508 11-215 (334)
262 1a8l_A Protein disulfide oxido 98.9 4.2E-09 1.5E-13 105.5 9.6 90 105-226 131-225 (226)
263 3evi_A Phosducin-like protein 98.9 4.3E-09 1.5E-13 97.3 8.3 82 107-223 22-110 (118)
264 3nol_A Glutamine cyclotransfer 98.8 2.4E-07 8.4E-12 97.0 22.1 161 268-518 46-212 (262)
265 2ghs_A AGR_C_1268P; regucalcin 98.8 1.5E-07 5.1E-12 99.6 20.9 161 261-509 45-213 (326)
266 1l0q_A Surface layer protein; 98.8 6.5E-07 2.2E-11 94.7 25.7 159 266-512 117-279 (391)
267 3h79_A Thioredoxin-like protei 98.8 4.7E-09 1.6E-13 96.2 7.7 87 107-225 32-126 (127)
268 1a0r_P Phosducin, MEKA, PP33; 98.8 4.5E-09 1.5E-13 109.2 7.9 75 107-214 132-206 (245)
269 3idv_A Protein disulfide-isome 98.8 4.7E-09 1.6E-13 105.7 7.7 97 100-229 24-124 (241)
270 3ira_A Conserved protein; meth 98.8 1.2E-09 4E-14 107.9 2.9 94 91-208 22-120 (173)
271 3a9g_A Putative uncharacterize 98.8 2.2E-07 7.5E-12 100.7 20.6 120 263-418 71-220 (354)
272 1mek_A Protein disulfide isome 98.8 1.9E-09 6.4E-14 96.1 3.4 88 107-226 23-116 (120)
273 1ri6_A Putative isomerase YBHE 98.8 1.5E-06 5.1E-11 89.1 25.5 178 266-513 85-269 (343)
274 1jof_A Carboxy-CIS,CIS-muconat 98.8 3.7E-07 1.3E-11 97.3 21.6 182 264-511 144-344 (365)
275 2yj7_A LPBCA thioredoxin; oxid 98.3 6.4E-10 2.2E-14 96.8 0.0 88 107-226 18-106 (106)
276 1jof_A Carboxy-CIS,CIS-muconat 98.8 9.2E-07 3.1E-11 94.3 23.9 186 267-513 85-297 (365)
277 2ghs_A AGR_C_1268P; regucalcin 98.8 3.2E-07 1.1E-11 97.0 19.7 121 264-431 133-265 (326)
278 2qgv_A Hydrogenase-1 operon pr 98.7 4.9E-09 1.7E-13 100.1 4.7 92 107-228 33-126 (140)
279 3scy_A Hypothetical bacterial 98.7 1.1E-06 3.6E-11 92.7 23.2 183 265-514 100-299 (361)
280 2hls_A Protein disulfide oxido 98.7 1.8E-08 6.1E-13 103.9 9.2 93 105-233 135-232 (243)
281 3ph9_A Anterior gradient prote 98.7 1.2E-09 4.3E-14 105.3 -0.0 108 88-226 24-141 (151)
282 1ilo_A Conserved hypothetical 98.7 2.6E-08 8.7E-13 82.7 7.9 73 111-222 2-76 (77)
283 1ri6_A Putative isomerase YBHE 98.7 1.5E-06 5.3E-11 89.0 22.8 179 265-514 129-316 (343)
284 1pby_B Quinohemoprotein amine 98.7 1.9E-06 6.5E-11 88.1 22.3 122 266-432 35-169 (337)
285 2ywm_A Glutaredoxin-like prote 98.7 6.5E-08 2.2E-12 97.3 10.5 90 105-229 133-222 (229)
286 3q6o_A Sulfhydryl oxidase 1; p 98.7 2.8E-08 9.6E-13 101.5 7.8 92 107-230 29-130 (244)
287 3t58_A Sulfhydryl oxidase 1; o 98.7 3.5E-08 1.2E-12 112.8 9.4 94 107-230 29-130 (519)
288 1wou_A Thioredoxin -related pr 98.7 1.5E-08 5.3E-13 92.7 5.2 46 104-156 20-73 (123)
289 3nol_A Glutamine cyclotransfer 98.6 1.3E-06 4.6E-11 91.5 20.1 165 266-506 88-254 (262)
290 3bws_A Protein LP49; two-domai 98.6 2.6E-06 8.8E-11 91.3 22.9 120 264-431 211-339 (433)
291 3c75_H MADH, methylamine dehyd 98.6 6.6E-07 2.3E-11 99.9 18.7 114 275-430 83-213 (426)
292 3bws_A Protein LP49; two-domai 98.6 2.5E-06 8.7E-11 91.4 22.3 155 266-508 255-432 (433)
293 3mbr_X Glutamine cyclotransfer 98.6 2.6E-06 8.8E-11 88.4 21.1 168 266-507 66-234 (243)
294 2trc_P Phosducin, MEKA, PP33; 98.6 3.3E-08 1.1E-12 100.6 6.8 82 106-223 118-209 (217)
295 3gyk_A 27KDA outer membrane pr 98.6 5E-08 1.7E-12 94.2 7.6 119 98-228 12-174 (175)
296 3kp8_A Vkorc1/thioredoxin doma 98.6 2E-09 7E-14 97.3 -2.2 88 100-223 4-91 (106)
297 3ed3_A Protein disulfide-isome 98.6 4.4E-08 1.5E-12 104.1 7.5 90 107-226 34-141 (298)
298 1cru_A Protein (soluble quinop 98.6 6.1E-07 2.1E-11 100.7 17.2 114 263-412 25-160 (454)
299 3nok_A Glutaminyl cyclase; bet 98.6 1.2E-06 4.2E-11 91.9 18.2 167 266-506 97-264 (268)
300 3qqz_A Putative uncharacterize 98.6 7.5E-06 2.6E-10 85.4 23.7 183 264-517 26-213 (255)
301 3c75_H MADH, methylamine dehyd 98.6 1.5E-06 5.2E-11 97.0 19.0 81 266-354 120-213 (426)
302 3sjl_D Methylamine dehydrogena 98.6 2.7E-06 9.4E-11 93.8 20.7 116 274-430 42-173 (386)
303 1jmx_B Amine dehydrogenase; ox 98.6 9.4E-07 3.2E-11 91.1 15.9 122 267-428 2-136 (349)
304 2es7_A Q8ZP25_salty, putative 98.6 1.3E-07 4.4E-12 89.9 8.6 92 108-230 34-128 (142)
305 3das_A Putative oxidoreductase 98.5 4.4E-06 1.5E-10 90.9 20.9 128 262-427 29-184 (347)
306 1nir_A Nitrite reductase; hemo 98.5 9.3E-06 3.2E-10 92.7 24.4 170 265-508 222-402 (543)
307 3iv4_A Putative oxidoreductase 98.5 1.7E-07 5.7E-12 86.2 7.2 87 108-222 24-111 (112)
308 1nir_A Nitrite reductase; hemo 98.5 5.4E-06 1.9E-10 94.6 21.4 168 267-513 181-360 (543)
309 3sre_A PON1, serum paraoxonase 98.5 5.8E-07 2E-11 98.1 12.7 115 265-425 112-251 (355)
310 1pby_B Quinohemoprotein amine 98.5 7.8E-06 2.7E-10 83.5 19.9 153 278-512 2-167 (337)
311 3f8u_A Protein disulfide-isome 98.5 2.4E-07 8.1E-12 103.7 9.1 88 107-227 369-461 (481)
312 3apo_A DNAJ homolog subfamily 98.5 3.8E-07 1.3E-11 108.4 11.0 92 102-227 449-542 (780)
313 3sre_A PON1, serum paraoxonase 98.4 6.7E-06 2.3E-10 89.8 19.4 164 264-507 49-251 (355)
314 2mad_H Methylamine dehydrogena 98.4 1.6E-05 5.4E-10 86.6 22.1 83 266-356 68-162 (373)
315 3idv_A Protein disulfide-isome 98.4 2.4E-07 8.3E-12 93.1 7.1 87 107-226 146-236 (241)
316 2mad_H Methylamine dehydrogena 98.4 1.7E-05 5.7E-10 86.4 21.9 114 275-430 31-160 (373)
317 2p9w_A MAL S 1 allergenic prot 98.4 5.2E-06 1.8E-10 89.7 17.3 130 264-426 62-215 (334)
318 1eej_A Thiol:disulfide interch 98.4 2.7E-07 9.3E-12 93.2 6.9 117 100-229 78-213 (216)
319 1mda_H Methylamine dehydrogena 98.4 2E-06 6.8E-11 94.2 14.2 113 276-432 31-162 (368)
320 2r2j_A Thioredoxin domain-cont 98.4 3.5E-07 1.2E-11 99.9 8.2 89 107-227 21-117 (382)
321 1qks_A Cytochrome CD1 nitrite 98.4 1.3E-05 4.5E-10 92.4 21.5 184 272-512 163-377 (567)
322 3dml_A Putative uncharacterize 98.4 2.7E-07 9.1E-12 85.4 5.8 90 106-229 16-112 (116)
323 3qcp_A QSOX from trypanosoma b 98.4 4.4E-07 1.5E-11 102.3 8.8 103 105-230 39-155 (470)
324 3f8u_A Protein disulfide-isome 98.4 3.4E-07 1.2E-11 102.4 7.7 89 107-227 20-109 (481)
325 3qqz_A Putative uncharacterize 98.4 7.4E-06 2.5E-10 85.5 17.1 128 267-426 123-253 (255)
326 3apo_A DNAJ homolog subfamily 98.4 2.1E-07 7.2E-12 110.6 5.7 90 107-228 674-768 (780)
327 3h93_A Thiol:disulfide interch 98.4 6.4E-07 2.2E-11 88.0 8.1 114 107-229 24-186 (192)
328 3hd5_A Thiol:disulfide interch 98.4 6.7E-07 2.3E-11 88.0 8.0 118 106-232 23-189 (195)
329 1jmx_B Amine dehydrogenase; ox 98.3 2.3E-05 7.9E-10 80.6 19.8 126 266-432 44-181 (349)
330 3uem_A Protein disulfide-isome 98.3 7.5E-07 2.6E-11 95.8 8.5 83 107-223 266-353 (361)
331 2b5e_A Protein disulfide-isome 98.3 3E-07 1E-11 103.7 5.3 87 107-227 375-467 (504)
332 2znm_A Thiol:disulfide interch 98.3 1.2E-06 4.2E-11 85.9 9.0 113 106-229 20-182 (195)
333 1qks_A Cytochrome CD1 nitrite 98.3 4.1E-05 1.4E-09 88.3 23.1 152 266-431 198-378 (567)
334 2dlx_A UBX domain-containing p 98.3 7.6E-06 2.6E-10 79.0 13.5 94 105-232 39-141 (153)
335 2b5e_A Protein disulfide-isome 98.3 1.5E-06 5.2E-11 97.9 9.9 89 107-227 30-122 (504)
336 1sji_A Calsequestrin 2, calseq 98.3 1.8E-06 6.2E-11 93.0 9.4 86 107-226 27-121 (350)
337 2oiz_A Aromatic amine dehydrog 98.2 7.8E-05 2.7E-09 80.1 21.8 84 266-356 52-146 (361)
338 2e7p_A Glutaredoxin; thioredox 98.2 4.2E-07 1.4E-11 81.6 2.4 84 107-224 18-105 (116)
339 2g8s_A Glucose/sorbosone dehyd 98.2 9.4E-06 3.2E-10 87.7 13.1 133 261-424 193-352 (353)
340 2rem_A Disulfide oxidoreductas 98.1 7.1E-06 2.4E-10 80.1 9.6 128 87-229 7-186 (193)
341 1mda_H Methylamine dehydrogena 98.1 4.1E-05 1.4E-09 83.8 16.4 81 266-356 67-162 (368)
342 2oiz_A Aromatic amine dehydrog 98.1 4.2E-05 1.4E-09 82.2 16.2 111 276-429 15-143 (361)
343 2djk_A PDI, protein disulfide- 98.1 1.1E-05 3.8E-10 74.8 9.5 92 107-230 22-118 (133)
344 1fwx_A Nitrous oxide reductase 98.0 2.7E-05 9.1E-10 90.1 13.7 135 266-426 196-361 (595)
345 3sjl_D Methylamine dehydrogena 98.0 7.2E-05 2.5E-09 82.5 16.5 85 266-356 80-175 (386)
346 1ttz_A Conserved hypothetical 98.0 5.9E-06 2E-10 72.2 5.6 75 112-227 3-77 (87)
347 1a8l_A Protein disulfide oxido 98.0 2.4E-05 8.2E-10 78.0 10.6 95 105-229 19-115 (226)
348 3s25_A Hypothetical 7-bladed b 97.8 0.00023 7.7E-09 75.7 15.5 141 273-510 153-295 (302)
349 1fwx_A Nitrous oxide reductase 97.8 0.00022 7.6E-09 82.5 15.9 171 275-509 100-309 (595)
350 3s25_A Hypothetical 7-bladed b 97.8 0.00035 1.2E-08 74.2 16.2 148 271-516 110-263 (302)
351 2fgx_A Putative thioredoxin; N 97.8 3.7E-05 1.3E-09 70.0 6.7 77 110-222 30-106 (107)
352 3das_A Putative oxidoreductase 97.8 0.00019 6.4E-09 78.1 13.5 80 318-426 31-116 (347)
353 3us3_A Calsequestrin-1; calciu 97.7 4.8E-05 1.6E-09 82.7 8.7 88 107-227 29-124 (367)
354 3amr_A 3-phytase; beta-propell 97.7 0.00044 1.5E-08 75.3 15.6 115 263-425 126-262 (355)
355 1cru_A Protein (soluble quinop 97.7 0.00021 7.2E-09 80.1 13.6 83 317-426 25-123 (454)
356 3ga4_A Dolichyl-diphosphooligo 97.7 3.4E-05 1.1E-09 76.4 5.9 59 106-181 35-107 (178)
357 2ece_A 462AA long hypothetical 97.7 0.00094 3.2E-08 75.0 17.7 184 262-507 135-351 (462)
358 2ece_A 462AA long hypothetical 97.7 0.0021 7.2E-08 72.2 20.4 133 266-425 189-351 (462)
359 1t3b_A Thiol:disulfide interch 97.7 3E-05 1E-09 78.0 4.9 106 106-224 84-208 (211)
360 3amr_A 3-phytase; beta-propell 97.7 0.0023 7.8E-08 69.7 20.0 165 278-516 88-273 (355)
361 2ymu_A WD-40 repeat protein; u 97.6 0.0085 2.9E-07 66.4 24.5 117 267-432 388-504 (577)
362 1hyu_A AHPF, alkyl hydroperoxi 97.6 0.00016 5.6E-09 82.2 9.7 82 106-223 115-196 (521)
363 1ego_A Glutaredoxin; electron 97.5 2E-05 6.8E-10 66.5 1.3 38 112-156 3-40 (85)
364 4a9v_A PHOX; hydrolase, beta-p 97.5 0.00079 2.7E-08 77.5 13.6 121 260-414 379-550 (592)
365 2ymu_A WD-40 repeat protein; u 97.4 0.021 7.2E-07 63.2 24.2 175 266-520 346-520 (577)
366 3uem_A Protein disulfide-isome 97.4 0.00045 1.5E-08 74.1 9.9 127 73-232 105-235 (361)
367 1wjk_A C330018D20RIK protein; 97.4 9E-05 3.1E-09 65.8 3.4 80 108-225 15-94 (100)
368 1v58_A Thiol:disulfide interch 97.4 0.00012 4.1E-09 75.1 4.8 117 101-228 90-234 (241)
369 2hqs_A Protein TOLB; TOLB, PAL 97.3 0.017 5.8E-07 62.8 21.2 119 266-432 180-306 (415)
370 4gqb_B Methylosome protein 50; 97.3 0.013 4.5E-07 62.2 19.7 116 268-429 131-249 (344)
371 1z6m_A Conserved hypothetical 97.3 0.00031 1.1E-08 67.5 6.1 48 101-155 20-70 (175)
372 3hz8_A Thiol:disulfide interch 97.2 0.00056 1.9E-08 67.5 7.8 42 107-155 23-65 (193)
373 1gxr_A ESG1, transducin-like e 97.2 0.065 2.2E-06 54.0 23.1 116 267-431 144-260 (337)
374 3q6k_A 43.2 kDa salivary prote 97.2 0.091 3.1E-06 57.7 25.3 187 262-508 84-306 (381)
375 4gqb_B Methylosome protein 50; 97.2 0.0094 3.2E-07 63.3 17.0 120 267-431 172-294 (344)
376 2aq5_A Coronin-1A; WD40 repeat 97.2 0.068 2.3E-06 56.7 23.8 163 266-510 133-301 (402)
377 1gxr_A ESG1, transducin-like e 97.1 0.093 3.2E-06 52.9 23.5 117 267-431 100-219 (337)
378 2ywm_A Glutaredoxin-like prote 97.1 0.00068 2.3E-08 67.8 7.2 94 106-228 19-116 (229)
379 3ei3_B DNA damage-binding prot 97.1 0.042 1.4E-06 57.6 20.7 115 267-426 121-236 (383)
380 4a9v_A PHOX; hydrolase, beta-p 97.0 0.0056 1.9E-07 70.5 14.4 105 316-433 381-525 (592)
381 2k8s_A Thioredoxin; dimer, str 96.9 0.00025 8.4E-09 59.7 1.5 36 112-154 4-40 (80)
382 3ow8_A WD repeat-containing pr 96.9 0.24 8.1E-06 51.5 24.5 116 268-432 126-243 (321)
383 2ojh_A Uncharacterized protein 96.8 0.07 2.4E-06 52.3 19.0 119 266-432 86-212 (297)
384 2hqs_A Protein TOLB; TOLB, PAL 96.8 0.048 1.6E-06 59.2 19.4 119 266-432 224-350 (415)
385 2ecf_A Dipeptidyl peptidase IV 96.8 0.041 1.4E-06 63.4 19.7 130 264-432 36-187 (741)
386 3q6k_A 43.2 kDa salivary prote 96.8 0.047 1.6E-06 60.0 18.9 180 264-505 25-252 (381)
387 2hls_A Protein disulfide oxido 96.8 0.0051 1.8E-07 62.9 10.5 87 108-229 25-119 (243)
388 4g56_B MGC81050 protein; prote 96.8 0.025 8.5E-07 59.9 16.1 118 267-429 142-261 (357)
389 3ei3_B DNA damage-binding prot 96.8 0.16 5.3E-06 53.2 22.0 125 266-432 75-200 (383)
390 3hxj_A Pyrrolo-quinoline quino 96.7 0.13 4.4E-06 52.4 20.5 106 270-429 142-247 (330)
391 3ow8_A WD repeat-containing pr 96.7 0.26 8.7E-06 51.2 23.0 117 268-433 84-202 (321)
392 2z3z_A Dipeptidyl aminopeptida 96.7 0.11 3.6E-06 59.7 21.7 130 264-432 180-350 (706)
393 2wg3_C Hedgehog-interacting pr 96.7 0.012 4E-07 66.3 13.3 85 263-349 12-114 (463)
394 1sq9_A Antiviral protein SKI8; 96.6 0.12 4.2E-06 53.8 19.9 137 265-432 187-328 (397)
395 4e54_B DNA damage-binding prot 96.6 0.031 1.1E-06 60.5 15.7 120 268-429 123-243 (435)
396 1erj_A Transcriptional repress 96.6 0.18 6E-06 53.8 21.4 125 268-430 68-200 (393)
397 1un2_A DSBA, thiol-disulfide i 96.6 0.00045 1.6E-08 68.9 0.9 44 106-156 111-158 (197)
398 4ery_A WD repeat-containing pr 96.6 0.21 7.1E-06 50.7 20.9 117 268-432 111-229 (312)
399 3kp9_A Vkorc1/thioredoxin doma 96.6 0.0012 4.2E-08 70.0 4.1 87 101-223 190-276 (291)
400 2aq5_A Coronin-1A; WD40 repeat 96.6 0.66 2.2E-05 49.0 25.5 119 267-430 84-211 (402)
401 2ojh_A Uncharacterized protein 96.5 0.17 5.9E-06 49.4 19.4 118 266-432 43-168 (297)
402 3zwl_B Eukaryotic translation 96.5 0.24 8.1E-06 50.4 21.1 112 267-427 35-152 (369)
403 2ynn_A Coatomer subunit beta'; 96.5 0.13 4.6E-06 52.5 19.3 112 267-427 16-129 (304)
404 3frx_A Guanine nucleotide-bind 96.5 0.52 1.8E-05 48.6 23.9 117 268-433 69-192 (319)
405 3azo_A Aminopeptidase; POP fam 96.5 0.045 1.5E-06 62.3 17.0 122 266-433 131-281 (662)
406 1got_B GT-beta; complex (GTP-b 96.5 0.13 4.3E-06 53.7 19.2 123 267-435 187-310 (340)
407 1r7h_A NRDH-redoxin; thioredox 96.5 0.0026 8.8E-08 51.8 4.8 46 112-176 3-48 (75)
408 3mkq_A Coatomer beta'-subunit; 96.5 0.46 1.6E-05 54.9 25.6 113 266-427 15-129 (814)
409 2pm9_A Protein WEB1, protein t 96.5 0.052 1.8E-06 56.9 16.1 125 266-430 167-298 (416)
410 4ery_A WD repeat-containing pr 96.5 0.28 9.6E-06 49.7 21.0 115 267-430 26-142 (312)
411 2c0g_A ERP29 homolog, windbeut 96.4 0.0097 3.3E-07 61.7 9.5 88 107-227 32-132 (248)
412 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.069 2.3E-06 57.9 16.7 124 265-429 103-232 (450)
413 4g56_B MGC81050 protein; prote 96.4 0.022 7.4E-07 60.4 12.4 120 267-431 184-306 (357)
414 4aez_A CDC20, WD repeat-contai 96.4 0.18 6.2E-06 53.6 19.6 118 266-431 219-341 (401)
415 3zwl_B Eukaryotic translation 96.3 0.37 1.3E-05 48.9 21.0 124 267-426 77-206 (369)
416 3pe7_A Oligogalacturonate lyas 96.3 0.56 1.9E-05 48.7 22.4 76 270-357 41-118 (388)
417 2xyi_A Probable histone-bindin 96.3 0.12 4.1E-06 55.8 17.7 117 266-426 183-309 (430)
418 3iz6_a 40S ribosomal protein R 96.2 0.31 1.1E-05 51.6 20.5 119 270-432 163-286 (380)
419 1h75_A Glutaredoxin-like prote 96.2 0.0044 1.5E-07 51.6 4.7 33 112-156 3-35 (81)
420 1r5m_A SIR4-interacting protei 96.2 0.12 4.2E-06 53.7 16.9 113 267-428 250-363 (425)
421 3hxj_A Pyrrolo-quinoline quino 96.2 0.12 4.2E-06 52.6 16.4 107 267-428 179-285 (330)
422 1k8k_C P40, ARP2/3 complex 41 96.2 0.32 1.1E-05 49.9 19.7 116 267-428 11-129 (372)
423 3iz6_a 40S ribosomal protein R 96.2 0.53 1.8E-05 49.8 22.0 123 267-429 208-332 (380)
424 3o4h_A Acylamino-acid-releasin 96.1 0.057 1.9E-06 60.7 14.8 150 270-512 70-231 (582)
425 3c7m_A Thiol:disulfide interch 96.1 0.0067 2.3E-07 58.7 6.2 42 107-155 16-59 (195)
426 1got_B GT-beta; complex (GTP-b 96.1 0.77 2.6E-05 47.6 22.4 112 268-429 147-260 (340)
427 3zwu_A Alkaline phosphatase PH 96.1 0.056 1.9E-06 62.7 14.7 107 316-435 381-527 (592)
428 1vyh_C Platelet-activating fac 96.1 0.17 5.9E-06 54.3 17.9 120 266-434 110-231 (410)
429 2z3z_A Dipeptidyl aminopeptida 96.0 0.13 4.6E-06 58.8 17.6 110 265-412 82-198 (706)
430 2pbi_B Guanine nucleotide-bind 96.0 0.85 2.9E-05 47.8 22.5 115 267-429 157-274 (354)
431 1vyh_C Platelet-activating fac 96.0 1 3.5E-05 48.2 23.5 76 267-356 195-272 (410)
432 1pgu_A Actin interacting prote 96.0 0.3 1E-05 53.9 19.7 115 266-430 408-523 (615)
433 2vdu_B TRNA (guanine-N(7)-)-me 96.0 0.15 5.3E-06 55.1 17.0 76 320-428 104-182 (450)
434 2xyi_A Probable histone-bindin 96.0 0.42 1.5E-05 51.4 20.4 122 265-427 129-264 (430)
435 3azo_A Aminopeptidase; POP fam 96.0 0.91 3.1E-05 51.4 24.0 128 266-432 189-331 (662)
436 1kte_A Thioltransferase; redox 96.0 0.0028 9.7E-08 55.5 2.5 34 112-152 14-47 (105)
437 2qc7_A ERP31, ERP28, endoplasm 95.9 0.0099 3.4E-07 61.2 6.7 88 107-226 21-118 (240)
438 1erj_A Transcriptional repress 95.9 1.6 5.5E-05 46.2 24.2 114 268-430 127-242 (393)
439 4aez_A CDC20, WD repeat-contai 95.9 1.2 4.1E-05 47.1 23.0 113 267-430 137-252 (401)
440 3v9f_A Two-component system se 95.8 0.41 1.4E-05 56.2 21.0 167 266-515 451-618 (781)
441 3mmy_A MRNA export factor; mRN 95.8 1.3 4.3E-05 44.9 22.1 116 266-429 41-163 (368)
442 1pgu_A Actin interacting prote 95.8 0.68 2.3E-05 51.0 21.3 120 267-431 119-243 (615)
443 3q7m_A Lipoprotein YFGL, BAMB; 95.7 1.1 3.6E-05 47.1 21.7 151 276-512 188-341 (376)
444 2pbi_B Guanine nucleotide-bind 95.7 0.57 1.9E-05 49.2 19.6 118 268-430 200-319 (354)
445 2wg3_C Hedgehog-interacting pr 95.7 0.12 4.2E-06 58.0 14.8 131 259-423 211-370 (463)
446 3nzn_A Glutaredoxin; structura 95.6 0.019 6.4E-07 50.7 6.5 77 112-222 24-101 (103)
447 3zwu_A Alkaline phosphatase PH 95.6 0.087 3E-06 61.1 13.7 97 261-358 380-526 (592)
448 2cq9_A GLRX2 protein, glutared 95.6 0.013 4.5E-07 54.2 5.3 23 111-141 29-51 (130)
449 1r5m_A SIR4-interacting protei 95.5 1.6 5.4E-05 45.2 22.0 76 266-355 110-185 (425)
450 2pm9_A Protein WEB1, protein t 95.5 0.12 4.2E-06 54.1 13.5 125 266-427 115-250 (416)
451 1k8k_C P40, ARP2/3 complex 41 95.5 1 3.6E-05 45.9 20.1 114 266-425 54-172 (372)
452 4a11_B DNA excision repair pro 95.4 0.41 1.4E-05 49.5 17.0 123 267-429 46-178 (408)
453 2xzm_R RACK1; ribosome, transl 95.4 2.3 7.9E-05 43.9 22.7 113 268-428 25-151 (343)
454 3fm0_A Protein CIAO1; WDR39,SG 95.4 1.4 4.8E-05 45.8 21.0 112 268-427 20-137 (345)
455 3k26_A Polycomb protein EED; W 95.3 1 3.5E-05 45.7 19.3 125 266-432 20-153 (366)
456 2ecf_A Dipeptidyl peptidase IV 95.3 0.51 1.7E-05 54.2 18.7 80 321-432 289-374 (741)
457 3i2n_A WD repeat-containing pr 95.3 0.68 2.3E-05 47.0 17.7 123 266-428 20-150 (357)
458 3dm0_A Maltose-binding peripla 95.2 1.3 4.5E-05 50.8 22.0 122 268-434 434-558 (694)
459 3l9v_A Putative thiol-disulfid 95.2 0.0052 1.8E-07 60.3 1.5 43 107-156 13-59 (189)
460 3frx_A Guanine nucleotide-bind 95.2 1.6 5.5E-05 44.8 20.5 115 268-430 111-231 (319)
461 4h5i_A Guanine nucleotide-exch 95.2 2.6 8.9E-05 44.4 22.7 115 266-428 135-256 (365)
462 1nr0_A Actin interacting prote 95.2 1.1 3.6E-05 50.9 20.8 125 266-430 149-274 (611)
463 3vl1_A 26S proteasome regulato 95.2 0.6 2.1E-05 49.0 17.5 127 266-428 183-324 (420)
464 3odt_A Protein DOA1; ubiquitin 95.2 1 3.6E-05 44.6 18.3 115 268-432 146-261 (313)
465 3dm0_A Maltose-binding peripla 95.1 0.67 2.3E-05 53.3 19.1 73 321-428 520-594 (694)
466 3dw8_B Serine/threonine-protei 95.1 0.79 2.7E-05 48.4 18.3 131 265-426 178-315 (447)
467 3q7m_A Lipoprotein YFGL, BAMB; 95.1 1.1 3.9E-05 46.8 19.3 114 271-430 50-166 (376)
468 2ht9_A Glutaredoxin-2; thiored 95.1 0.016 5.5E-07 55.0 4.4 23 111-141 51-73 (146)
469 4e54_B DNA damage-binding prot 95.1 0.42 1.4E-05 51.5 16.2 115 268-427 168-283 (435)
470 1sq9_A Antiviral protein SKI8; 94.9 3 0.0001 43.1 21.6 130 266-432 123-273 (397)
471 3i2n_A WD repeat-containing pr 94.9 0.23 7.7E-06 50.6 12.6 111 271-426 124-243 (357)
472 3v9f_A Two-component system se 94.8 1.2 4E-05 52.3 20.2 121 267-432 409-530 (781)
473 4aow_A Guanine nucleotide-bind 94.7 2.4 8.1E-05 42.6 19.9 113 268-429 175-289 (340)
474 2ynn_A Coatomer subunit beta'; 94.7 3.9 0.00013 41.4 21.8 112 268-428 59-174 (304)
475 3vl1_A 26S proteasome regulato 94.7 2.5 8.4E-05 44.2 20.7 115 271-434 104-220 (420)
476 1k32_A Tricorn protease; prote 94.7 0.73 2.5E-05 56.0 18.6 117 266-433 297-416 (1045)
477 4a2l_A BT_4663, two-component 94.7 2 6.9E-05 50.4 21.8 167 266-515 453-621 (795)
478 2gop_A Trilobed protease; beta 94.6 1.3 4.5E-05 45.2 17.9 59 265-337 59-122 (347)
479 3mkq_A Coatomer beta'-subunit; 94.6 2.6 9E-05 48.5 22.2 122 266-434 99-225 (814)
480 3gre_A Serine/threonine-protei 94.5 1.6 5.6E-05 46.2 19.0 177 276-512 181-363 (437)
481 3ic4_A Glutaredoxin (GRX-1); s 94.5 0.025 8.7E-07 48.2 3.8 23 112-141 14-36 (92)
482 3lrv_A PRE-mRNA-splicing facto 94.5 0.96 3.3E-05 46.7 16.6 115 267-428 128-246 (343)
483 4a11_B DNA excision repair pro 94.3 2.8 9.6E-05 43.1 19.6 129 269-429 146-279 (408)
484 3pe7_A Oligogalacturonate lyas 94.1 0.83 2.8E-05 47.5 15.3 102 285-432 166-279 (388)
485 3vu4_A KMHSV2; beta-propeller 94.1 5.2 0.00018 41.7 21.4 34 397-430 197-231 (355)
486 2hze_A Glutaredoxin-1; thiored 94.1 0.025 8.5E-07 50.8 2.9 37 111-156 20-56 (114)
487 1fov_A Glutaredoxin 3, GRX3; a 94.0 0.048 1.6E-06 45.0 4.4 47 112-176 3-49 (82)
488 3jrp_A Fusion protein of prote 93.9 1.7 5.7E-05 44.3 16.8 115 267-427 14-135 (379)
489 1nr0_A Actin interacting prote 93.9 4.5 0.00015 45.8 21.9 130 266-435 192-322 (611)
490 3sfz_A APAF-1, apoptotic pepti 93.9 2 6.7E-05 52.6 20.1 117 267-432 618-738 (1249)
491 3odt_A Protein DOA1; ubiquitin 93.8 5.5 0.00019 39.2 21.6 113 268-432 108-220 (313)
492 1kb0_A Quinohemoprotein alcoho 93.8 6.9 0.00024 45.5 23.8 45 482-528 482-527 (677)
493 3o4h_A Acylamino-acid-releasin 93.8 0.42 1.4E-05 53.5 12.9 31 401-432 115-147 (582)
494 4h5i_A Guanine nucleotide-exch 93.7 3.1 0.00011 43.8 19.0 120 267-429 179-303 (365)
495 3f3f_A Nucleoporin SEH1; struc 93.7 2.3 7.9E-05 42.1 17.0 116 265-428 12-145 (351)
496 3c5m_A Oligogalacturonate lyas 93.7 1.5 5.3E-05 45.2 16.3 119 267-432 190-335 (396)
497 3k26_A Polycomb protein EED; W 93.7 1.1 3.8E-05 45.4 14.8 119 267-428 72-194 (366)
498 2xzm_R RACK1; ribosome, transl 93.6 7.5 0.00026 40.0 21.5 75 267-355 79-154 (343)
499 3gre_A Serine/threonine-protei 93.6 2.9 9.8E-05 44.3 18.5 126 267-430 114-249 (437)
500 3v7d_B Cell division control p 93.6 5.6 0.00019 42.4 20.9 107 271-428 275-383 (464)
No 1
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=99.88 E-value=8.5e-23 Score=193.79 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=120.5
Q ss_pred cCCCCCCCceeecc-cCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhh-cHHHHHHHHHCCC--eEEEEEEcCCC
Q 004302 82 TFNEFQGPHHLWFN-IVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVT-FEKVKSIQQSFPQ--LQVIGFLHGCS 157 (762)
Q Consensus 82 tl~~l~g~~~~w~n-~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~e-mP~L~~L~~~y~~--v~VvgV~~~~~ 157 (762)
.+..-+.|+|...+ .+|+.++|++++||+|||+|||+||+|| +.+ +|.|++++++|++ ++||+|+.+..
T Consensus 3 ~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C-------~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~ 75 (160)
T 3lor_A 3 SLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGC-------VNHGVPQAQKIHRMIDESQVQVIGLHSVFE 75 (160)
T ss_dssp -CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHH-------HHTHHHHHHHHHHHSCTTTEEEEEEECCCS
T ss_pred ccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcch-------hhhhhHHHHHHHHHhCcCCcEEEEEecccc
Confidence 34556677777777 7888999999999999999999999877 896 9999999999986 99999998521
Q ss_pred ccCcCCHHHHHHHHHhcCCCcceeeCCCCc------cccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 158 TISAVDQTRLVEMLMKEYITFPILLSNKNF------PQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 158 ~~~e~~~~~v~~f~~k~~itfPVl~D~~~~------~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
....++.+.+++|+++++++||++.|.... +...|++ | +||||++|+++.++.|..+.++|++.|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~ 155 (160)
T 3lor_A 76 HHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS 155 (160)
T ss_dssp CGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence 111247899999999999999999998876 7777765 4 69999999999999999999999999999997
Q ss_pred hh
Q 004302 228 QQ 229 (762)
Q Consensus 228 ~~ 229 (762)
+.
T Consensus 156 ~~ 157 (160)
T 3lor_A 156 ET 157 (160)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 2
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=99.88 E-value=1.6e-22 Score=191.75 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=116.0
Q ss_pred CCCceeeccc--CCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhh-cHHHHHHHHHCCC--eEEEEEEcCCCccCc
Q 004302 87 QGPHHLWFNI--VEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVT-FEKVKSIQQSFPQ--LQVIGFLHGCSTISA 161 (762)
Q Consensus 87 ~g~~~~w~n~--~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~e-mP~L~~L~~~y~~--v~VvgV~~~~~~~~e 161 (762)
+.|+|.+.+. +|+.++|++++||+|||+|||+||+|| +.+ ||.|++++++|++ ++||+|+++......
T Consensus 5 ~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C-------~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~ 77 (158)
T 3eyt_A 5 KAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGC-------VMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEA 77 (158)
T ss_dssp ECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHH-------HHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGG
T ss_pred cCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcch-------hhhhhHHHHHHHHHhCcCCEEEEEEEeccccccc
Confidence 3566777773 678999999999999999999999876 997 9999999999984 999999985211112
Q ss_pred CCHHHHHHHHHhcCCCcceeeCCCC-----ccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 162 VDQTRLVEMLMKEYITFPILLSNKN-----FPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfPVl~D~~~-----~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++.+.+++|+++++++||++.|... .+.+.|++ | +||||++|+++.++.|..+.++|++.|++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 78 MTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp SCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999887 45667754 5 6999999999999999999999999999999764
No 3
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.5e-21 Score=219.79 Aligned_cols=211 Identities=13% Similarity=0.087 Sum_probs=140.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC--------CcEEEE-ecCCCC-CCCCcccccccCCcceEEEecCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGN--------GKILDC-IGSCPG-FEDGEFESSKLMRPAASFYHKDDDC 332 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--------G~i~~~-iGsG~G-~~DG~~~~a~fn~P~GIavd~~~g~ 332 (762)
.+.+|.++++++.+++|||+|.++++|+++|.+ |.+-+. .....| +. .-+....-..|.+|+++++++.
T Consensus 245 ~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~-~l~~~~~~~~p~~ia~~p~G~~ 323 (496)
T 3kya_A 245 AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK-QLFTIADPSWEFQIFIHPTGKY 323 (496)
T ss_dssp EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE-EEEECSSSSCCEEEEECTTSSE
T ss_pred cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc-eeEecCCCCCceEEEEcCCCCE
Confidence 478999999998899999999999999999985 433000 000000 00 0000011246999999997667
Q ss_pred EEEEeCCCCeEEEEeCC--CCEE---EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcc-eEEEc--
Q 004302 333 LYIVDSENHAIRRADMG--RRVL---ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW-HLMKS-- 404 (762)
Q Consensus 333 LYVADt~NhrIRkid~~--~g~I---~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~-gIavd-- 404 (762)
|||||++||+|++++.+ .+.+ ++++|.. +..|.. .|. +..++|++|+ +++++
T Consensus 324 lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~--g~~G~~--------DG~----------~~~a~f~~P~~gv~vd~~ 383 (496)
T 3kya_A 324 AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY--KQSGYR--------DDV----------GTEARMNNPCQGVFVKNP 383 (496)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECCCEEEEEBT--TBCCCB--------CCB----------GGGCBCSSEEEEEEEECT
T ss_pred EEEEeCCCCEEEEEecCCCcceecccEEecCCC--CCCccc--------CCc----------ccccccCCCeEEEEEccc
Confidence 99999999999997754 3555 7888872 122210 122 3357899999 89997
Q ss_pred -----CCCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcc
Q 004302 405 -----EDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG 479 (762)
Q Consensus 405 -----~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~ 479 (762)
.+|+|||||++|||||+|++ +|.++++ +|.|... .+....+ | ...++......+.+.|
T Consensus 384 ~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~Ti-aG~g~~~-----------~~~~~~~--~--G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 384 DYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTY-AGRGAST-----------SLADGNQ--W--GTDDGDLREVARFRDV 446 (496)
T ss_dssp TCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEE-EESCTTH-----------HHHHSCS--C--CCCCEETTTTCCCSSE
T ss_pred cccccCCCeEEEEECCCCEEEEEeC-CCCEEEE-ecccccc-----------cccCccc--c--ccCCCCchhhhhcCCC
Confidence 67999999999999999996 5688887 6665210 0000000 0 0011111122344456
Q ss_pred eeeeEEecCCEEEEEECCCCEEEEEECCCCcE
Q 004302 480 LISSSIAFQNHILLCDIVGQRIMRLNRESGVC 511 (762)
Q Consensus 480 lgsav~~~~g~LYVADt~NhRIrkidl~~~~~ 511 (762)
.+++++..++.|||||++|||||+|++++..+
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 77777665689999999999999999988653
No 4
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=99.86 E-value=3.4e-22 Score=192.70 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=103.9
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
-++|+|++.|.+|++++|++++||+|||+|| |+||+|| +.|||.|.+++++|.+ ++||+|+.+
T Consensus 8 ~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C-------~~e~~~l~~~~~~~~~~~~~~v~vs~d------- 73 (157)
T 4g2e_A 8 ELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVC-------TKEMCTFRDSMAKFNQVNAVVLGISVD------- 73 (157)
T ss_dssp SBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC-------------CCSCGGGGGGGCSSEEEEEESS-------
T ss_pred CCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCcc-------ccchhhcccccccccccCceEeeeccc-------
Confidence 3578899999999999999999999999999 9999866 9999999999999975 999999876
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCce---------------EEEEcCCCCEEEEecC-----CcCHHHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGAC---------------YLLSKDFGNARVFHEN-----SLDIGMLNKAV 222 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~---------------t~lId~~G~iv~~~~G-----~~~~~~L~~~l 222 (762)
+.+.+++|+++++++||++.|.+..+.++||+. +||||++|+|++.+.| +.+.+++.++|
T Consensus 74 ~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l 153 (157)
T 4g2e_A 74 PPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVV 153 (157)
T ss_dssp CHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHH
T ss_pred chhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHH
Confidence 478899999999999999999998888888762 5999999999987754 34566777777
Q ss_pred HHH
Q 004302 223 EEL 225 (762)
Q Consensus 223 ~~l 225 (762)
+.|
T Consensus 154 ~~L 156 (157)
T 4g2e_A 154 KSL 156 (157)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 5
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=99.86 E-value=2.4e-21 Score=189.74 Aligned_cols=137 Identities=15% Similarity=0.074 Sum_probs=110.8
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC--
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS-- 160 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~-- 160 (762)
.-..|+|.+.|.+|+.++|++++||+|||+||||||+|| +.+||.|++++++|++ ++||+|+++. |..
T Consensus 15 ~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C-------~~~~p~l~~l~~~~~~~~~~vi~is~d~-~~~~~ 86 (180)
T 3kij_A 15 INSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLT-------DRNYLGLKELHKEFGPSHFSVLAFPCNQ-FGESE 86 (180)
T ss_dssp CCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHTTTSEEEEEEECCC-STTCC
T ss_pred cCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCc-------HHHHHHHHHHHHHhccCCeEEEEEECCc-cccCC
Confidence 344566777888888999999999999999999999866 9999999999999986 9999999864 221
Q ss_pred cCCHHHHHHHHHh-cCCCcceeeCCCC--c---ccccc------Cce-----EEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 161 AVDQTRLVEMLMK-EYITFPILLSNKN--F---PQMEN------GAC-----YLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 161 e~~~~~v~~f~~k-~~itfPVl~D~~~--~---~~~~y------gv~-----t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++.+.+++|+++ ++++||++.+.+. . ....| ++| +||||++|+++.++.|..+.++|++.|+
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~ 166 (180)
T 3kij_A 87 PRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIA 166 (180)
T ss_dssp CSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence 2478899999999 9999999763321 1 11111 234 7999999999999999999888888888
Q ss_pred HHHHhh
Q 004302 224 ELIMQQ 229 (762)
Q Consensus 224 ~ll~~~ 229 (762)
+++++.
T Consensus 167 ~lL~~~ 172 (180)
T 3kij_A 167 ALVRQV 172 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 6
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=184.58 Aligned_cols=135 Identities=10% Similarity=0.022 Sum_probs=117.1
Q ss_pred CCC-CceeecccCCCccccCCCCCCEEEEEEeccCCCC-ccCCCCcchhhcHHHHHHHHHCC------CeEEEEEEcCCC
Q 004302 86 FQG-PHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCD-SLIAGCGTVVTFEKVKSIQQSFP------QLQVIGFLHGCS 157 (762)
Q Consensus 86 l~g-~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~p-C~~p~C~~~~emP~L~~L~~~y~------~v~VvgV~~~~~ 157 (762)
..| |+|.+.|.+|+.++|++++||+|||+|||+||+| | ..++|.|++++++|+ +++||+|+++.
T Consensus 3 ~~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C-------~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~- 74 (171)
T 2rli_A 3 FTGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDIC-------PDELEKLVQVVRQLEAEPGLPPVQPVFITVDP- 74 (171)
T ss_dssp CCCCSCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSH-------HHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS-
T ss_pred CCCCCCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchh-------HHHHHHHHHHHHHHhhccCCCceEEEEEEECC-
Confidence 347 8899999999999999999999999999999986 6 999999999999993 59999999874
Q ss_pred ccCcCCHHHHHHHHHhcCCCcceeeCCCC---ccccccCc---e----------------EEEEcCCCCEEEEecCCcCH
Q 004302 158 TISAVDQTRLVEMLMKEYITFPILLSNKN---FPQMENGA---C----------------YLLSKDFGNARVFHENSLDI 215 (762)
Q Consensus 158 ~~~e~~~~~v~~f~~k~~itfPVl~D~~~---~~~~~ygv---~----------------t~lId~~G~iv~~~~G~~~~ 215 (762)
..++.+.+++|+++++++||++.+... .+.++|++ | +||||++|+++.++.|..+.
T Consensus 75 --~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 152 (171)
T 2rli_A 75 --ERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSA 152 (171)
T ss_dssp --TTCCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCH
T ss_pred --CCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCH
Confidence 124688999999999999999987542 34555654 2 59999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 004302 216 GMLNKAVEELIMQQQ 230 (762)
Q Consensus 216 ~~L~~~l~~ll~~~~ 230 (762)
++|.+.|++++++.+
T Consensus 153 ~~l~~~l~~ll~~~~ 167 (171)
T 2rli_A 153 EQISDSVRRHMAAFR 167 (171)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 7
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=3.4e-21 Score=181.99 Aligned_cols=128 Identities=10% Similarity=0.055 Sum_probs=112.9
Q ss_pred CCCCCceeecccCCCccccC--CCCCCEEEEEEeccCCCC--ccCCCCcchhhcHHHHHHHHHC-CC--eEEEEEEcCCC
Q 004302 85 EFQGPHHLWFNIVEDNIHFF--KRGGAFLVLAGRFVDNCD--SLIAGCGTVVTFEKVKSIQQSF-PQ--LQVIGFLHGCS 157 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Ls--d~rGK~VvLnFWAtWC~p--C~~p~C~~~~emP~L~~L~~~y-~~--v~VvgV~~~~~ 157 (762)
.-+.|+|.+.+.+|++++|+ +++||+|||+|||+||+| | +.++|.|.+++++| ++ ++||+|+.+.
T Consensus 8 G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C-------~~~~~~l~~l~~~~~~~~~~~~v~v~~d~- 79 (150)
T 3fw2_A 8 GKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQ-------KQSNSELREIYKKYKKNKYIGMLGISLDV- 79 (150)
T ss_dssp TSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHH-------HHHHHHHHHHHHHHTTCSSEEEEEEECCS-
T ss_pred CCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHH-------HHHHHHHHHHHHHhccCCCeEEEEEEcCC-
Confidence 34577888889999999999 999999999999999986 6 99999999999999 54 9999999986
Q ss_pred ccCcCCHHHHHHHHHhcCCCcceeeCC---CCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 158 TISAVDQTRLVEMLMKEYITFPILLSN---KNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 158 ~~~e~~~~~v~~f~~k~~itfPVl~D~---~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+.+.+++|+++++++||++.|. ...+...|++ | +||||++|+++.++. +.++|++.|++++++
T Consensus 80 -----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~~ 149 (150)
T 3fw2_A 80 -----DKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIVEE 149 (150)
T ss_dssp -----CHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHHhc
Confidence 6789999999999999999998 3456667765 4 699999999999875 778899999999876
No 8
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=199.17 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=109.5
Q ss_pred CCCceeecccC-CCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-C-c
Q 004302 87 QGPHHLWFNIV-EDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-S-A 161 (762)
Q Consensus 87 ~g~~~~w~n~~-g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~-e 161 (762)
+.++|++.+.+ |+.++|++|+||+|||+||||||+|| + |||.|++|+++|++ ++||||+++. |. . .
T Consensus 34 ~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c-------~-e~p~L~~l~~~~~~~g~~Vlgvs~d~-f~~~e~ 104 (215)
T 2i3y_A 34 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-------A-QYPELNALQEELKPYGLVVLGFPCNQ-FGKQEP 104 (215)
T ss_dssp CGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGG-------G-GHHHHHHHHHHHGGGTEEEEEEECCC-STTCCC
T ss_pred CcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-------H-hHHHHHHHHHHhccCCeEEEEEEccc-cCcCCC
Confidence 35667778888 88999999999999999999999876 8 99999999999975 9999999874 32 1 1
Q ss_pred CCHHHHHHHHH------hcCCCcceeeCCC--Ccc----cc-----------ccC--------------c---e-EEEEc
Q 004302 162 VDQTRLVEMLM------KEYITFPILLSNK--NFP----QM-----------ENG--------------A---C-YLLSK 200 (762)
Q Consensus 162 ~~~~~v~~f~~------k~~itfPVl~D~~--~~~----~~-----------~yg--------------v---~-t~lId 200 (762)
.+.+.+++|++ +++++||++.|.+ +.. +. .++ + | +||||
T Consensus 105 ~~~~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID 184 (215)
T 2i3y_A 105 GDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVG 184 (215)
T ss_dssp SCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEEC
T ss_pred CCHHHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEEC
Confidence 35788999999 9999999997533 111 10 011 2 3 79999
Q ss_pred CCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 201 DFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 201 ~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++|+++.++.|..+.++|++.|++++.+.
T Consensus 185 ~~G~vv~~~~g~~~~~~l~~~I~~ll~~~ 213 (215)
T 2i3y_A 185 PDGIPVMRWSHRATVSSVKTDILAYLKQF 213 (215)
T ss_dssp TTSCEEEEECTTSCHHHHHHHHHHHGGGC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998753
No 9
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=1.7e-19 Score=191.21 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=154.9
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCCc------------------------EEEEEcC-CCcEEEEecCCCCCCCCccc
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNHH------------------------RIIVFDG-NGKILDCIGSCPGFEDGEFE 314 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~nh------------------------rI~v~d~-~G~i~~~iGsG~G~~DG~~~ 314 (762)
...+|..|.+||+|+ +|+|||+|.+++ +|+++|. +|+++..+|.
T Consensus 19 ~~~~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------- 87 (329)
T 3fvz_A 19 VYLLPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------- 87 (329)
T ss_dssp GGCCCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT----------
T ss_pred hceecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC----------
Confidence 356799999999996 789999999985 6999998 5998887764
Q ss_pred ccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCC--EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCC
Q 004302 315 SSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRR--VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP 392 (762)
Q Consensus 315 ~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g--~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~ 392 (762)
..|+.|.||++++ +++|||+|+.+++|+++|+++. .+.++...+ ..| . ..
T Consensus 88 -~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~---~~g------------~-----------~~ 139 (329)
T 3fvz_A 88 -NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM---QPG------------S-----------DQ 139 (329)
T ss_dssp -TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTT---BCC------------C-----------ST
T ss_pred -CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccC---CCC------------C-----------Cc
Confidence 2578899999997 6779999999999999998776 566664332 111 1 12
Q ss_pred CCCCCcceEEEcC-CCcEEEEEC-CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcc
Q 004302 393 QSLIFPWHLMKSE-DDNLLIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSC 470 (762)
Q Consensus 393 ~~L~~P~gIavd~-dG~LYVAD~-gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~ 470 (762)
..|..|.+|++++ +|+|||+|. .+++|++|+.++..+.++ ...+ . ...
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~-~~~g-------~----------------------~~~ 189 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW-GEES-------S----------------------GSS 189 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE-CEEC-------C----------------------SSS
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe-ccCC-------C----------------------CCC
Confidence 3588999999999 899999997 799999999765544433 1111 0 000
Q ss_pred cccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECC-CCcEEEEeeccccccCCCceeec-cccceeeccc--ccCCCc
Q 004302 471 SLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE-SGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAG--GHQGSW 546 (762)
Q Consensus 471 ~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~-~~~~sti~~s~~G~lG~p~~~~~-pl~~v~~~~~--~~~g~~ 546 (762)
...+....+.++++++.+++|||+|..|++|++++.+ +..+.++...+.| +.|+.+.+ | ..++.... ...+..
T Consensus 190 ~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~p-g~~~~~~g~~~v~~~~ 266 (329)
T 3fvz_A 190 PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG--RNVFAISYIP-GFLFAVNGKPYFGDQE 266 (329)
T ss_dssp CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT--TCEEEEEEET-TEEEEEECCCCTTCSC
T ss_pred CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC--CCcceeeecC-CEEEEeCCCEEeccCC
Confidence 0011112345677766668999999999999999999 5555565433222 22333322 3 44443221 123333
Q ss_pred cccceeeecCCCce
Q 004302 547 TDHIQRCSLLPGRI 560 (762)
Q Consensus 547 ~~~~~~~~~~pG~~ 560 (762)
...+..+++..|++
T Consensus 267 ~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 267 PVQGFVMNFSSGEI 280 (329)
T ss_dssp CCCEEEEETTTCCE
T ss_pred CcEEEEEEcCCCeE
Confidence 34455555555544
No 10
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.85 E-value=1.1e-20 Score=210.97 Aligned_cols=190 Identities=14% Similarity=0.133 Sum_probs=137.1
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEE-EEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGN-GKIL-DCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~-~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.+..|.+|++|+.+++|||+|..+|+|++++.+ |.+. ..+..+. ...|.+|+++++++.|||+|+.+
T Consensus 226 ~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----------~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 226 NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----------KGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----------CSSCEEEEECTTSSEEEEEETTT
T ss_pred ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----------CCCcccEEEeCCCCEEEEEeCCC
Confidence 589999999998789999999999999999996 8773 3333221 12466899999766799999999
Q ss_pred CeEEEEeCC--CCE---EEEEeec-CCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEE---------cC
Q 004302 341 HAIRRADMG--RRV---LETVYPT-SGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK---------SE 405 (762)
Q Consensus 341 hrIRkid~~--~g~---I~TiaG~-G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIav---------d~ 405 (762)
|+|++++.+ ++. +.+++|. |. .|.. .|. ...++|++|.||++ +.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~---~g~~--------dg~----------~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSS---PGWV--------DGM----------GTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTC---CCCB--------CEE----------GGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCC---CccC--------CCc----------ccceEEcCCccEEEEccccccccCC
Confidence 999998865 332 4578876 31 1210 111 23467999999999 88
Q ss_pred CCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEE
Q 004302 406 DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI 485 (762)
Q Consensus 406 dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~ 485 (762)
+|+|||||++||||+++++ +|.+.++ +|.+.. ...|. .++..........|.+++++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~-~G~v~t~-~G~g~~-~~~G~--------------------~dG~~~~~~~~~~P~giavd 410 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTP-EGRVTTY-AGRGNS-REWGY--------------------VDGELRSQALFNHPTSIAYD 410 (433)
T ss_dssp CEEEEEEETTTTEEEEECT-TSEEEEE-ECCCTT-CSSCC--------------------BCEETTTTCBCSSEEEEEEE
T ss_pred CCcEEEEECCCCEEEEECC-CCCEEEE-EeCCCC-Ccccc--------------------CCCccccccEeCCCcEEEEE
Confidence 8999999999999999997 5677776 565420 00010 01101111233445677776
Q ss_pred ecCCEEEEEECCCCEEEEEECC
Q 004302 486 AFQNHILLCDIVGQRIMRLNRE 507 (762)
Q Consensus 486 ~~~g~LYVADt~NhRIrkidl~ 507 (762)
..+++|||||++|||||+|+++
T Consensus 411 ~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 411 MKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEecC
Confidence 5689999999999999999875
No 11
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=99.85 E-value=3.8e-21 Score=187.84 Aligned_cols=132 Identities=8% Similarity=0.002 Sum_probs=118.4
Q ss_pred CCCCCceeeccc--CCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--e------EEEEEEc
Q 004302 85 EFQGPHHLWFNI--VEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--L------QVIGFLH 154 (762)
Q Consensus 85 ~l~g~~~~w~n~--~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v------~VvgV~~ 154 (762)
.-+.|+|.+.+. +|+.++|++++||+|||+|||+||++| +.++|.|++++++|++ + +||+|+.
T Consensus 34 g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~ 106 (183)
T 3lwa_A 34 RQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPC-------RSESDDLQIIHEELQAAGNGDTPGGTVLGINV 106 (183)
T ss_dssp CCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHHHCC---CCSEEEEEEEC
T ss_pred CCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhH-------HHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC
Confidence 346788999999 999999999999999999999999876 9999999999999975 8 9999998
Q ss_pred CCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccccC------ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 155 GCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQMENG------AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 155 ~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~yg------v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+. .+.+.+++|+++++++||++.|.+..+...|+ +| +||||++|+++.++.|..+.++|.+.|+++++
T Consensus 107 d~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 107 RD-----YSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp SC-----CCHHHHHHHHHHTTCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred CC-----CCHHHHHHHHHHcCCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 75 26889999999999999999999887777664 56 69999999999999999999999999999987
Q ss_pred h
Q 004302 228 Q 228 (762)
Q Consensus 228 ~ 228 (762)
+
T Consensus 182 ~ 182 (183)
T 3lwa_A 182 E 182 (183)
T ss_dssp C
T ss_pred c
Confidence 5
No 12
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=99.85 E-value=2.9e-21 Score=195.35 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=107.3
Q ss_pred CCceeecccC-CCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcC
Q 004302 88 GPHHLWFNIV-EDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAV 162 (762)
Q Consensus 88 g~~~~w~n~~-g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~ 162 (762)
.|+|++.+.+ |+.++|++++||+|||+||||||+|| ++|||.|++|+++|++ ++||+|+++. |. ..+
T Consensus 26 ~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C-------~~e~p~l~~l~~~~~~~g~~vv~v~~d~-~~~~e~d 97 (208)
T 2f8a_A 26 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTT-------VRDYTQMNELQRRLGPRGLVVLGFPCNQ-FGHQENA 97 (208)
T ss_dssp GGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTEEEEEEECCC-STTTTCS
T ss_pred cCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccH-------HHHHHHHHHHHHHccCCCeEEEEEECCc-ccccCCC
Confidence 4566777777 88999999999999999999999866 9999999999999975 9999999863 21 113
Q ss_pred CHHHHHHHHH------hcCCCcceeeCCC--Ccccc--------cc-------------------------Cc---e-EE
Q 004302 163 DQTRLVEMLM------KEYITFPILLSNK--NFPQM--------EN-------------------------GA---C-YL 197 (762)
Q Consensus 163 ~~~~v~~f~~------k~~itfPVl~D~~--~~~~~--------~y-------------------------gv---~-t~ 197 (762)
+.+.+++|++ +++++||++.|.+ +.... .+ ++ | +|
T Consensus 98 ~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tf 177 (208)
T 2f8a_A 98 KNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKF 177 (208)
T ss_dssp CHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEE
T ss_pred CHHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEE
Confidence 5788999998 8999999996422 11100 00 13 4 79
Q ss_pred EEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 198 LSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 198 lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
|||++|+++.++.|..+.++|++.|++++.+
T Consensus 178 lID~~G~i~~~~~g~~~~~~l~~~I~~ll~~ 208 (208)
T 2f8a_A 178 LVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 208 (208)
T ss_dssp EECTTSCEEEEECTTSCGGGGHHHHHHHHC-
T ss_pred EEcCCCcEEEEeCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998753
No 13
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=99.85 E-value=2.7e-21 Score=185.19 Aligned_cols=134 Identities=9% Similarity=0.093 Sum_probs=112.0
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-C-cC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-S-AV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~-e~ 162 (762)
+.|+|.+.+.+|++++|++++||+|||+|||+||++| +.+||.|++++++|++ ++||+|+++. +. . .+
T Consensus 11 ~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~vv~vs~d~-~~~~~~~ 82 (170)
T 2p5q_A 11 SVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMT-------NSNYAEMNQLYEKYKDQGLEILAFPCNQ-FGEEEPG 82 (170)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTEEEEEEECCT-TTTCCCS
T ss_pred cccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCcc-------HHHHHHHHHHHHHhccCCEEEEEEECCC-CCCCCCC
Confidence 4567888888899999999999999999999999866 9999999999999986 9999999863 11 1 13
Q ss_pred CHHHHHHHHH-hcCCCccee--eCCCCcccc------------c--cCce----EEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 163 DQTRLVEMLM-KEYITFPIL--LSNKNFPQM------------E--NGAC----YLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 163 ~~~~v~~f~~-k~~itfPVl--~D~~~~~~~------------~--ygv~----t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
+.+.+++|++ +++++||++ .|.++.... . .++| +||||++|+++.++.|..+.++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~ 162 (170)
T 2p5q_A 83 TNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERD 162 (170)
T ss_dssp CHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHH
T ss_pred CHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHH
Confidence 6789999999 789999999 565543321 1 3456 69999999999999999999999999
Q ss_pred HHHHHHh
Q 004302 222 VEELIMQ 228 (762)
Q Consensus 222 l~~ll~~ 228 (762)
|++++++
T Consensus 163 i~~ll~~ 169 (170)
T 2p5q_A 163 IKQLLEI 169 (170)
T ss_dssp HHHHTTC
T ss_pred HHHHhhc
Confidence 9988753
No 14
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=99.85 E-value=1.9e-21 Score=181.23 Aligned_cols=126 Identities=6% Similarity=-0.040 Sum_probs=108.7
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHH---HHHHCCC--eEEEEEEcCCCccC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKS---IQQSFPQ--LQVIGFLHGCSTIS 160 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~---L~~~y~~--v~VvgV~~~~~~~~ 160 (762)
-+.|+|.+.+.+|+.++|++++||+|||+|||+||+|| +.+||.|.+ ++++|++ ++||+|+.++
T Consensus 5 ~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C-------~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~---- 73 (142)
T 3ewl_A 5 MKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNC-------RKFEKLFAEIPAFVEMVENGTLRVLAIYPDE---- 73 (142)
T ss_dssp SBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHH-------HHHHHHHHTCHHHHHHHHHTSEEEEEEECSS----
T ss_pred CcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccH-------HHHHHHHHHhHHHHHHhccCCeEEEEEEecC----
Confidence 45778899999999999999999999999999999876 999999998 9999964 9999999986
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCCCcccc--ccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNKNFPQM--ENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~~~~~~--~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+.+.+++|+++++++||++.|.+..... .|++ | +||||++|+++. +..+.++|++.|+++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~~ 141 (142)
T 3ewl_A 74 --NREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQAG 141 (142)
T ss_dssp --CHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC---
T ss_pred --CHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHHcc
Confidence 7889999999999999999999877654 6765 4 599999999987 56778888888886643
No 15
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=4.8e-21 Score=217.38 Aligned_cols=158 Identities=15% Similarity=0.232 Sum_probs=119.3
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCC---cE---EEEecC-C-CCCCCCcccccccCCcc-eEEEec------
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNG---KI---LDCIGS-C-PGFEDGEFESSKLMRPA-ASFYHK------ 328 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G---~i---~~~iGs-G-~G~~DG~~~~a~fn~P~-GIavd~------ 328 (762)
-..|.+||+++.++.|||+|+++|||++++.+| .+ ..++|. | .|+.||.+..++|+.|. |++++.
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 357899999987777999999999999988755 33 467886 5 78889999999999999 889872
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCC-CCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-
Q 004302 329 DDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISK-KNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED- 406 (762)
Q Consensus 329 ~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~-~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d- 406 (762)
.+++|||||++|||||+|++ +|.++|++|.|.... .+.. ..|. .+ ......++|++|+||+++++
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~-------~~G~---~d--G~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGN-------QWGT---DD--GDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSC-------SCCC---CC--EETTTTCCCSSEEEEEEETTT
T ss_pred CCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCcc-------cccc---CC--CCchhhhhcCCCcEEEEECCC
Confidence 36899999999999999995 679999999873100 0000 0011 01 01245678999999999996
Q ss_pred CcEEEEECCCCEEEEEECCCCcEEEEEcCCc
Q 004302 407 DNLLIINRSFETLWIMDLASGEIKEAVKGFS 437 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g 437 (762)
|+|||||++|||||++++++.. . .+|++
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~-~--~~~~~ 483 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEE-N--VAGDE 483 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC---------
T ss_pred CEEEEEeCCCCEEEEEECCCCc-c--cccCC
Confidence 9999999999999999997654 1 25555
No 16
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=99.85 E-value=5.8e-21 Score=180.60 Aligned_cols=130 Identities=7% Similarity=-0.027 Sum_probs=108.5
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
++++.+... .+|+.++|++++||+|||+|||+||+|| +.++|.|.+++++|++ ++||+|+.+.
T Consensus 3 ~pa~~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~C-------~~~~~~l~~l~~~~~~~~v~vv~v~~d~------- 67 (151)
T 3raz_A 3 LSADELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGPC-------RKEMPAMSKWYKAQKKGSVDMVGIALDT------- 67 (151)
T ss_dssp ----CEEET-TTCCEECGGGCCSSEEEEEEECTTCHHH-------HHHHHHHHHHHHTSCTTTEEEEEEESSC-------
T ss_pred CCcchhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHHH-------HHHHHHHHHHHHHhccCCeEEEEEECCC-------
Confidence 344555544 6888999999999999999999999876 9999999999999964 9999999864
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCc---cccccC-----ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNF---PQMENG-----AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~---~~~~yg-----v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.+.+++|+++++++||++.|.+.. +...|+ +| +||||++|+++.++.|..+.++|++.|+++.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~ 143 (151)
T 3raz_A 68 SDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR 143 (151)
T ss_dssp HHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHcCCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 688999999999999999987543 344565 45 69999999999999999999999999999887643
No 17
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=99.85 E-value=4.9e-21 Score=182.36 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=114.4
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCC-ccCCCCcchhhcHHHHHHHHHCC------CeEEEEEEcCCCcc
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCD-SLIAGCGTVVTFEKVKSIQQSFP------QLQVIGFLHGCSTI 159 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~p-C~~p~C~~~~emP~L~~L~~~y~------~v~VvgV~~~~~~~ 159 (762)
.+|+|.+.|.+|++++|++++||+|||+|||+||+| | ..+||.|++++++|+ +++||+|+.+.
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C-------~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~--- 71 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVC-------PEELEKMIQVVDEIDSITTLPDLTPLFISIDP--- 71 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHH-------HHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT---
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchh-------HHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC---
Confidence 468899999999999999999999999999999986 6 999999999999984 69999999875
Q ss_pred CcCCHHHHHHHHHhcCCCcceeeCC---CCccccccCc---e----------------EEEEcCCCCEEEEecCCcCHHH
Q 004302 160 SAVDQTRLVEMLMKEYITFPILLSN---KNFPQMENGA---C----------------YLLSKDFGNARVFHENSLDIGM 217 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~~itfPVl~D~---~~~~~~~ygv---~----------------t~lId~~G~iv~~~~G~~~~~~ 217 (762)
..++.+.+++|+++++++||++.+. ...+.++|++ | +||||++|+++.++.|..+.++
T Consensus 72 ~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 151 (164)
T 2ggt_A 72 ERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGE 151 (164)
T ss_dssp TTCCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHH
T ss_pred CCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHH
Confidence 2246889999999999999998543 2345566764 4 6999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 004302 218 LNKAVEELIMQ 228 (762)
Q Consensus 218 L~~~l~~ll~~ 228 (762)
|.+.|++++++
T Consensus 152 l~~~l~~ll~~ 162 (164)
T 2ggt_A 152 IAASIATHMRP 162 (164)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 18
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=99.85 E-value=2.8e-21 Score=182.23 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=117.7
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~ 164 (762)
+.|+|.+.+.+|+.++|++++||++||+||++||++| +.++|.|++++++|++ ++|++|+.+. +.
T Consensus 5 ~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C-------~~~~~~l~~~~~~~~~~~v~vv~v~~d~------~~ 71 (151)
T 2f9s_A 5 DAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPC-------KKEFPYMANQYKHFKSQGVEIVAVNVGE------SK 71 (151)
T ss_dssp ECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHGGGTEEEEEEEESC------CH
T ss_pred cCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhccCCeEEEEEECCC------CH
Confidence 3567888899999999999999999999999999876 9999999999999975 9999999886 67
Q ss_pred HHHHHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCC
Q 004302 165 TRLVEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENS 233 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s 233 (762)
+.+++|+++++++||++.|....+...|++ | +||||++|+++....|..+.++|.+.|++++.....++
T Consensus 72 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~~~~ 144 (151)
T 2f9s_A 72 IAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGETSGL 144 (151)
T ss_dssp HHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhhccc
Confidence 899999999999999999988887888765 5 49999999999999999999999999999988765553
No 19
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=192.61 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=108.9
Q ss_pred CCceeecccC-CCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-Cc-C
Q 004302 88 GPHHLWFNIV-EDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-SA-V 162 (762)
Q Consensus 88 g~~~~w~n~~-g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~e-~ 162 (762)
.|+|++.+.+ |+.++|++|+||+|||+||||||+|| . |||.|++|+++|++ ++||||+++. |. .+ .
T Consensus 17 ~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-------~-e~p~L~~l~~~~~~~g~~vlgvs~d~-f~~~e~~ 87 (207)
T 2r37_A 17 IYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-------G-QYIELNALQEELAPFGLVILGFPCNQ-FGKQEPG 87 (207)
T ss_dssp GGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-------T-HHHHHHHHHHHHGGGTEEEEEEECCC-BTTCCCS
T ss_pred cCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-------H-HHHHHHHHHHHhccCCEEEEEEECcc-cCcCCCC
Confidence 4567777888 88999999999999999999999865 4 99999999999975 9999999764 32 11 3
Q ss_pred CHHHHHHHHH------hcCCCcceeeCCC--Ccc----cc-----------ccC--------------c---e-EEEEcC
Q 004302 163 DQTRLVEMLM------KEYITFPILLSNK--NFP----QM-----------ENG--------------A---C-YLLSKD 201 (762)
Q Consensus 163 ~~~~v~~f~~------k~~itfPVl~D~~--~~~----~~-----------~yg--------------v---~-t~lId~ 201 (762)
+.+.+++|++ +++++||++.|.+ +.. +. .++ + | +||||+
T Consensus 88 ~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~ 167 (207)
T 2r37_A 88 ENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP 167 (207)
T ss_dssp CHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT
T ss_pred CHHHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECC
Confidence 5788999999 9999999997532 111 10 011 2 3 799999
Q ss_pred CCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 202 FGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 202 ~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
+|+++.++.|..+.++|++.|++++.+..
T Consensus 168 ~G~i~~~~~g~~~~~~l~~~I~~ll~~~~ 196 (207)
T 2r37_A 168 DGIPIMRWHHRTTVSNVKMDILSYMRRQA 196 (207)
T ss_dssp TSCEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999998753
No 20
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=99.84 E-value=1.6e-21 Score=192.68 Aligned_cols=134 Identities=9% Similarity=0.035 Sum_probs=108.5
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~ 162 (762)
+.|+|++.|.+|++++|++++||+|||+|||+||+|| +.+||.|++++++|++ ++||+|+++. +. ..+
T Consensus 25 ~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C-------~~~~p~l~~l~~~~~~~~~~vi~is~d~-~~~~e~~ 96 (187)
T 3dwv_A 25 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYT-------KGGYETATTLYNKYKSQGFTVLAFPSNQ-FGGQEPG 96 (187)
T ss_dssp SGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCC-------TTHHHHHHHHHHHHGGGTCEEEEEEBCC-CSSCSSS
T ss_pred ccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCc-------HHHHHHHHHHHHHhhhCCeEEEEEECcc-cCCCCCC
Confidence 4566777788888999999999999999999999866 9999999999999986 9999999873 11 113
Q ss_pred CHHHHHHHHHh-cCCCcceee--CCCCccc------------cccCc---e----EEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 163 DQTRLVEMLMK-EYITFPILL--SNKNFPQ------------MENGA---C----YLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 163 ~~~~v~~f~~k-~~itfPVl~--D~~~~~~------------~~ygv---~----t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
+.+.+++|+++ ++++||++. |..+... ..+++ | +||||++|+++.++.|..+.++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~ 176 (187)
T 3dwv_A 97 NEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEE 176 (187)
T ss_dssp BTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHH
T ss_pred CHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHH
Confidence 57889999995 599999996 4333211 22343 3 6999999999999999999999999
Q ss_pred HHHHHHHh
Q 004302 221 AVEELIMQ 228 (762)
Q Consensus 221 ~l~~ll~~ 228 (762)
.|+++++.
T Consensus 177 ~i~~lL~~ 184 (187)
T 3dwv_A 177 KLIPLLGS 184 (187)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhc
Confidence 99998864
No 21
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=99.84 E-value=5.4e-21 Score=182.94 Aligned_cols=134 Identities=9% Similarity=0.034 Sum_probs=111.4
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-C-cC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-S-AV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~-e~ 162 (762)
+.|+|.+.+.+|++++|++++||+|||+|||+||+|| +.+||.|++++++|++ ++||+|+.+. +. . ..
T Consensus 10 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~vv~v~~d~-~~~~~~~ 81 (169)
T 2v1m_A 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGAT-------DKNYRQLQEMHTRLVGKGLRILAFPCNQ-FGGQEPW 81 (169)
T ss_dssp SGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTEEEEEEECCC-STTCCCS
T ss_pred ccccceeecCCCCCccHHHcCCCEEEEEEeeccCCch-------HHHHHHHHHHHHHhhcCCeEEEEEECCc-cCCCCCC
Confidence 4567888888899999999999999999999999866 9999999999999985 9999999863 21 1 13
Q ss_pred CHHHHHHH-HHhcCCCcceee--CCCCcccc-cc--------C-----c---e-EEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 163 DQTRLVEM-LMKEYITFPILL--SNKNFPQM-EN--------G-----A---C-YLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 163 ~~~~v~~f-~~k~~itfPVl~--D~~~~~~~-~y--------g-----v---~-t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
+.+.+++| .++++++||++. |.++.... .| + + | +||||++|+++.++.|..+.++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 161 (169)
T 2v1m_A 82 AEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGD 161 (169)
T ss_dssp CHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHH
T ss_pred CHHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHH
Confidence 67889999 599999999996 55443221 11 3 2 3 79999999999999999999999999
Q ss_pred HHHHHHh
Q 004302 222 VEELIMQ 228 (762)
Q Consensus 222 l~~ll~~ 228 (762)
|++++.+
T Consensus 162 i~~ll~~ 168 (169)
T 2v1m_A 162 IMELLEK 168 (169)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 9999874
No 22
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=99.84 E-value=4.1e-21 Score=179.99 Aligned_cols=122 Identities=9% Similarity=0.027 Sum_probs=99.2
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
-+.|+|.+ +.+|+.++|++++||+|||+|||+||+|| +.+||.|++++++|++ ++||+|+.+. +
T Consensus 11 ~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C-------~~~~~~l~~l~~~~~~~~~~vv~vs~d~------~ 76 (143)
T 4fo5_A 11 DLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAES-------RARNVQLANEVNKFGPDKIAMCSISMDE------K 76 (143)
T ss_dssp SBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHH-------HHHHHHHHHHHTTSCTTTEEEEEEECCS------C
T ss_pred ccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHH-------HHHHHHHHHHHHHhCcCCEEEEEEEccC------C
Confidence 35677787 78899999999999999999999999876 9999999999999985 9999999986 6
Q ss_pred HHHHHHHHHhcCCCc-ceeeCCC---CccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 164 QTRLVEMLMKEYITF-PILLSNK---NFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 164 ~~~v~~f~~k~~itf-PVl~D~~---~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.+.+++|+++++++| |++.|.. ..+.+.|++ | +||||++|+++.++.+ .++|++.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~~ 142 (143)
T 4fo5_A 77 ESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVT---PEKLTEILKA 142 (143)
T ss_dssp HHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEESCC---HHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEccCC---HHHHHHHHHh
Confidence 889999999999999 7888764 345566765 4 7999999999998754 5667766654
No 23
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.3e-21 Score=186.75 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=97.9
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcCC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAVD 163 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~~ 163 (762)
.|+|.+.|.+|++++|++++||+|||+|||+||+|| + +||.|++++++|++ ++||+|+++. +. ..++
T Consensus 12 ~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C-------~-~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~d~ 82 (171)
T 3cmi_A 12 FYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-------P-QYKELEALYKRYKDEGFTIIGFPCNQ-FGHQEPGS 82 (171)
T ss_dssp GGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCH-------H-HHHHHHHHHHHHGGGTEEEEEEEECS-CC------
T ss_pred eeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcc-------h-hHHHHHHHHHHhccCCeEEEEEECcc-cCCCCCCC
Confidence 356777788888999999999999999999999866 9 99999999999985 9999999862 11 1135
Q ss_pred HHHHHHHH-HhcCCCcceeeCCC--Cccc---------ccc---Cce-------EEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 164 QTRLVEML-MKEYITFPILLSNK--NFPQ---------MEN---GAC-------YLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 164 ~~~v~~f~-~k~~itfPVl~D~~--~~~~---------~~y---gv~-------t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
.+.+++|+ ++++++||++.|.+ +... ..| ++| +||||++|+++.+..|..+.++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~ 162 (171)
T 3cmi_A 83 DEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSET 162 (171)
T ss_dssp ------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHH
T ss_pred HHHHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHH
Confidence 67899999 99999999998643 2111 123 456 79999999999999999999999999
Q ss_pred HHHHHHh
Q 004302 222 VEELIMQ 228 (762)
Q Consensus 222 l~~ll~~ 228 (762)
|++++++
T Consensus 163 i~~ll~~ 169 (171)
T 3cmi_A 163 IEELLKE 169 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9999865
No 24
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=99.84 E-value=6.7e-21 Score=178.34 Aligned_cols=123 Identities=6% Similarity=-0.075 Sum_probs=106.2
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHH---HHHHCCC--eEEEEEEcCCCcc
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKS---IQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~---L~~~y~~--v~VvgV~~~~~~~ 159 (762)
.-++|+|.+.+.+|+.++|++++||+|||+|||+||+|| +.+||.|++ ++++|++ ++||+|+.+.
T Consensus 8 G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C-------~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~--- 77 (142)
T 3eur_A 8 GTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHAC-------AEMIEGLKASPVINGFTAAKKLKVLSIYPDE--- 77 (142)
T ss_dssp TSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHH-------HHHHHHHHHCHHHHHHHHTTSEEEEEEECSS---
T ss_pred CCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccH-------HHHHHHHhhhHHHHHHhccCCeEEEEEEcCC---
Confidence 446788999999999999999999999999999999876 999999999 9999954 9999999986
Q ss_pred CcCCHHHHHHHHHhcCCCcceeeCCCCc--cccccC---ce-EEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 160 SAVDQTRLVEMLMKEYITFPILLSNKNF--PQMENG---AC-YLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~~itfPVl~D~~~~--~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
+.+.+++|+++++++||.+.|.+.. +...|+ +| +||||++|+++.+..+ .++|++.|+
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~ 141 (142)
T 3eur_A 78 ---ELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDAT---LQKVEQYLA 141 (142)
T ss_dssp ---CHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEEC---HHHHHHHHH
T ss_pred ---CHHHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCCC---HHHHHHHHh
Confidence 6789999999999999999998764 455665 45 5999999999998875 466666654
No 25
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=99.84 E-value=1e-20 Score=179.14 Aligned_cols=131 Identities=9% Similarity=0.039 Sum_probs=114.3
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~ 164 (762)
+.|+|.+.+.+|+.++|++++||+|||+|||+||++| +.++|.|++++++|++ ++|++|+.+. +.
T Consensus 8 ~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~vv~v~~d~------~~ 74 (152)
T 2lrn_A 8 VAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWC-------RKETPYLLKTYNAFKDKGFTIYGVSTDR------RE 74 (152)
T ss_dssp ECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTH-------HHHHHHHHHHHHHHTTTTEEEEEEECCS------CH
T ss_pred cCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhH-------HHHHHHHHHHHHHhccCCeEEEEEEccC------CH
Confidence 4677888899999999999999999999999999866 9999999999999986 9999999886 68
Q ss_pred HHHHHHHHhcCCCcceeeCC---CCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCC
Q 004302 165 TRLVEMLMKEYITFPILLSN---KNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENS 233 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~---~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s 233 (762)
+.+++|+++++++||++.|. ...+.+.|++ | +||||++|+++.+.. +.++|++.|++++.+..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~~~~~~~~ 147 (152)
T 2lrn_A 75 EDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKFVNGAKEGH 147 (152)
T ss_dssp HHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEECC---CTTHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHHHhhccccc
Confidence 89999999999999999998 4556667764 5 499999999999874 45789999999998876653
No 26
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=99.83 E-value=1.7e-20 Score=170.92 Aligned_cols=131 Identities=8% Similarity=0.020 Sum_probs=116.1
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQT 165 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~ 165 (762)
+.|+|.+.+.+|+.+++++++||++||+||++||++| +.++|.|+++++++++ +++++|+.+. .....+.+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~v~i~~~~-~~~~~~~~ 72 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSIC-------LASLPDTDEIAKEAGDDYVVLTVVSPG-HKGEQSEA 72 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHH-------HHHHHHHHHHHHTCTTTEEEEEEECTT-STTCCCHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHH-------HHHHHHHHHHHHHhCCCcEEEEEEcCC-CCchhhHH
Confidence 3578899999999999999999999999999999876 9999999999999986 9999997653 34456889
Q ss_pred HHHHHHHhcCC-CcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 166 RLVEMLMKEYI-TFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 166 ~v~~f~~k~~i-tfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.+.+|++++++ +||++.|....+...|++ | ++|||++|+++.++.|..+.++|.+.|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 73 DFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp HHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred HHHHHHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 99999999999 999999998888888865 4 599999999999999999999998888764
No 27
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.83 E-value=1.1e-20 Score=173.37 Aligned_cols=125 Identities=11% Similarity=0.031 Sum_probs=113.6
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRL 167 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v 167 (762)
.|++.+.+.+|+.+++++++||++||+||++||++| ++++|.|++++++|++++|++|+.++ +.+.+
T Consensus 4 ~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~~~~------~~~~~ 70 (136)
T 1lu4_A 4 RLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFC-------NAEAPSLSQVAAANPAVTFVGIATRA------DVGAM 70 (136)
T ss_dssp GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEECSS------CHHHH
T ss_pred CCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhH-------HHHHHHHHHHHHHCCCcEEEEEEcCC------CHHHH
Confidence 567888899999999999999999999999999876 99999999999999999999999886 68999
Q ss_pred HHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEec---CCcCHHHHHHHHHHHH
Q 004302 168 VEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHE---NSLDIGMLNKAVEELI 226 (762)
Q Consensus 168 ~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~---G~~~~~~L~~~l~~ll 226 (762)
++|+++++++||++.|....+.+.|++ | +++||++|+++ ++. |..+.++|.+.|++++
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 71 QSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp HHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred HHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 999999999999999988877777765 4 58999999999 999 9999999999998865
No 28
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=99.83 E-value=1.2e-20 Score=186.72 Aligned_cols=135 Identities=10% Similarity=0.046 Sum_probs=112.5
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~ 162 (762)
+.|+|.+.|.+|++++|++++||+|||+|||+||++| +.+||.|++++++|++ ++||+|+.+. +. ..+
T Consensus 27 ~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C-------~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~~ 98 (190)
T 2vup_A 27 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYT-------KGGYETATTLYNKYKSQGFTVLAFPCNQ-FGGQEPG 98 (190)
T ss_dssp SGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTCEEEEEECCC-STTCCCS
T ss_pred cccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCcc-------HHHHHHHHHHHHHHhcCCeEEEEEEcCc-cCCCCCC
Confidence 4566777788888999999999999999999999866 9999999999999986 9999999873 21 113
Q ss_pred CHHHHHHHH-HhcCCCcceee--CCCCccc------------cccCce-------EEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 163 DQTRLVEML-MKEYITFPILL--SNKNFPQ------------MENGAC-------YLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 163 ~~~~v~~f~-~k~~itfPVl~--D~~~~~~------------~~ygv~-------t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
+.+.+++|+ ++++++||++. |.++... ...++| +||||++|+++.+..|..+.++|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~ 178 (190)
T 2vup_A 99 NEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEK 178 (190)
T ss_dssp CHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHH
T ss_pred CHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHH
Confidence 678999999 89999999997 4443321 112455 7999999999999999999999999
Q ss_pred HHHHHHHhh
Q 004302 221 AVEELIMQQ 229 (762)
Q Consensus 221 ~l~~ll~~~ 229 (762)
.|++++++.
T Consensus 179 ~i~~ll~~~ 187 (190)
T 2vup_A 179 KLIPLLEST 187 (190)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhc
Confidence 999999764
No 29
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=99.83 E-value=2.2e-21 Score=188.94 Aligned_cols=129 Identities=9% Similarity=-0.000 Sum_probs=112.8
Q ss_pred CCCCceeecccCCCccccCCC--CCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKR--GGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS 160 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~--rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~ 160 (762)
-++|+|++.|.+|++++|+++ +||+|||+|| |+||++| ..|||.|.+++++|++ ++||+|+.+
T Consensus 9 ~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C-------~~e~~~l~~~~~~~~~~~v~vv~is~d----- 76 (164)
T 4gqc_A 9 EKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVC-------TKELCTFRDKMAQLEKANAEVLAISVD----- 76 (164)
T ss_dssp SBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEE-------CSSCEESCCCGGGGGGSSSEEEEEESS-----
T ss_pred CCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCc-------ccchhhhhhhHHHhhccCceEEEecCC-----
Confidence 367889999999999999998 9999999998 9999876 9999999999999975 999999876
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCCCccccccCc-------------e-EEEEcCCCCEEEEecCC-----cCHHHHHHH
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNKNFPQMENGA-------------C-YLLSKDFGNARVFHENS-----LDIGMLNKA 221 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv-------------~-t~lId~~G~iv~~~~G~-----~~~~~L~~~ 221 (762)
+.+.+++|.++++++||++.|.++.+.++||+ | +||||++|+|++.+.+. .+.+++.+.
T Consensus 77 --~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~ 154 (164)
T 4gqc_A 77 --SPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVRE 154 (164)
T ss_dssp --CHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHH
T ss_pred --CHHHHHHHHHhcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHH
Confidence 47889999999999999999999988888986 2 59999999999887543 456777777
Q ss_pred HHHHHHh
Q 004302 222 VEELIMQ 228 (762)
Q Consensus 222 l~~ll~~ 228 (762)
+++|..|
T Consensus 155 l~~l~~e 161 (164)
T 4gqc_A 155 ANKIAGE 161 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 8877766
No 30
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.83 E-value=1.8e-20 Score=183.85 Aligned_cols=138 Identities=10% Similarity=0.022 Sum_probs=117.6
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCcc--CcCC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTI--SAVD 163 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~--~e~~ 163 (762)
+.|+|.+.+.+|+.++|++++||+|||+|||+||++| +.+||.|++++++|++ ++||+|+.+. .. .+++
T Consensus 12 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~v~v~~d~-~~~~~~d~ 83 (188)
T 2cvb_A 12 PLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYV-------KGSIGELVALAERYRGKVAFVGINAND-YEKYPEDA 83 (188)
T ss_dssp BCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHH-------HTTHHHHHHHHHHTTTTEEEEEEECCC-TTTCGGGS
T ss_pred CCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccH-------HHHHHHHHHHHHHhhcCeEEEEEEcCc-cccccccC
Confidence 4677888889999999999999999999999999876 9999999999999998 9999999863 11 0147
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEE--------ecCCcCHHHHHHHHHHHHHhhcc
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVF--------HENSLDIGMLNKAVEELIMQQQE 231 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~--------~~G~~~~~~L~~~l~~ll~~~~~ 231 (762)
.+.+++|+++++++||++.|.+..+...|++. +||||++|+++.+ +.|..+.++|++.|++++.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~ 163 (188)
T 2cvb_A 84 PEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP 163 (188)
T ss_dssp HHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCC
Confidence 88999999999999999999888888888764 5999999999988 22344678999999999987543
Q ss_pred C
Q 004302 232 N 232 (762)
Q Consensus 232 ~ 232 (762)
+
T Consensus 164 ~ 164 (188)
T 2cvb_A 164 P 164 (188)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.1e-21 Score=186.84 Aligned_cols=132 Identities=9% Similarity=0.074 Sum_probs=108.8
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-Cc-C
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-SA-V 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~e-~ 162 (762)
+.|+|.+.+.+|++++|++++||+|||+|||+||+|| +++||.|++++++|++ ++||+|+++. +. .+ +
T Consensus 28 ~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C-------~~~~p~l~~l~~~~~~~~v~vv~vs~d~-~~~~e~~ 99 (181)
T 2p31_A 28 DFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFT-------DQHYRALQQLQRDLGPHHFNVLAFPCNQ-FGQQEPD 99 (181)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTEEEEEEECCC-STTCCCS
T ss_pred ccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCc-------HHHHHHHHHHHHHhhcCCEEEEEEECcC-CCCCCCC
Confidence 4567888888899999999999999999999999866 9999999999999985 9999999874 21 11 2
Q ss_pred CHHHHHHHHHh-cCCCcceeeC--CCCcccc---cc---Cce--------EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 163 DQTRLVEMLMK-EYITFPILLS--NKNFPQM---EN---GAC--------YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 163 ~~~~v~~f~~k-~~itfPVl~D--~~~~~~~---~y---gv~--------t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+.+.+++|+++ ++++||++.| .++.... .| ++| +||||++|+++.++.|..+.++|++.|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 179 (181)
T 2p31_A 100 SNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179 (181)
T ss_dssp CHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhcCCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 67899999999 9999999964 3332211 11 345 799999999999999999999999888876
Q ss_pred H
Q 004302 226 I 226 (762)
Q Consensus 226 l 226 (762)
+
T Consensus 180 l 180 (181)
T 2p31_A 180 V 180 (181)
T ss_dssp C
T ss_pred h
Confidence 4
No 32
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.83 E-value=1.1e-20 Score=184.83 Aligned_cols=133 Identities=9% Similarity=0.002 Sum_probs=114.4
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~ 163 (762)
-+.|+|.+.+.+|+.++|++++||+|||+||++||++| +.++|.|++++++|+ +++||+|+.+. .+
T Consensus 38 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~vv~v~~d~-----~~ 105 (186)
T 1jfu_A 38 LKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPC-------RKEMPALDELQGKLSGPNFEVVAINIDT-----RD 105 (186)
T ss_dssp CBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHCBTTEEEEEEECCC-----SC
T ss_pred CcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhH-------HHHHHHHHHHHHHhccCCcEEEEEECCC-----CC
Confidence 45678899999999999999999999999999999876 999999999999998 39999999885 24
Q ss_pred HHHHHHHHHhcCC-CcceeeCCCCcccccc-------Cce-EEEEcCCCCEEEEecCCcC--HHHHHHHHHHHHHhhc
Q 004302 164 QTRLVEMLMKEYI-TFPILLSNKNFPQMEN-------GAC-YLLSKDFGNARVFHENSLD--IGMLNKAVEELIMQQQ 230 (762)
Q Consensus 164 ~~~v~~f~~k~~i-tfPVl~D~~~~~~~~y-------gv~-t~lId~~G~iv~~~~G~~~--~~~L~~~l~~ll~~~~ 230 (762)
.+.+++|++++++ .||++.|.+..+.+.| ++| +||||++|+++.++.|..+ .++|.+.|+.++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~a 183 (186)
T 1jfu_A 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKAA 183 (186)
T ss_dssp TTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcccc
Confidence 5688999999999 5999999887666665 456 5999999999999999875 6789999999988754
No 33
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.83 E-value=2.3e-20 Score=175.64 Aligned_cols=136 Identities=10% Similarity=0.088 Sum_probs=121.8
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
.-+.|+|.+.+.+|+.+++++++||++||+||++||++| +.++|.|++++++|++ ++|++|+.+. +
T Consensus 5 G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~vv~v~~~~-----~ 72 (153)
T 2l5o_A 5 SKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGC-------VSEMPKIIKTANDYKNKNFQVLAVAQPI-----D 72 (153)
T ss_dssp CTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTH-------HHHHHHHHHHHHHGGGTTEEEEEEECTT-----S
T ss_pred CCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccH-------HHHHHHHHHHHHHhccCCeEEEEEecCC-----C
Confidence 345678899999999999999999999999999999866 9999999999999985 9999999765 3
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccC
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~ 232 (762)
+.+.+++|+++++++||++.|....+...|++ | +||||++|+++....|..+.++|.+.|++++.....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~ 146 (153)
T 2l5o_A 73 PIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAE 146 (153)
T ss_dssp CHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSC
T ss_pred CHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhc
Confidence 78899999999999999999988777777765 4 4899999999999999999999999999999986655
No 34
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=2e-19 Score=190.60 Aligned_cols=207 Identities=16% Similarity=0.182 Sum_probs=144.7
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc--EEEEecC-C-CCCCCCcccccccCCcceEEEecCCCeEEEE
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK--ILDCIGS-C-PGFEDGEFESSKLMRPAASFYHKDDDCLYIV 336 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~--i~~~iGs-G-~G~~DG~~~~a~fn~P~GIavd~~~g~LYVA 336 (762)
...|..|.+|++|+ +|+|||+|..+++|++++.+|+ .+..+|. + .|.. ...|+.|.+|++++++++|||+
T Consensus 87 ~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~-----~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 87 KNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD-----QNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp TTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS-----TTCCSSEEEEEECTTTCCEEEE
T ss_pred CCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC-----ccccCCCcEEEEeCCCCeEEEE
Confidence 35688999999996 6779999999999999999987 5666765 2 3322 3478999999999768999999
Q ss_pred eC-CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEEC
Q 004302 337 DS-ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINR 414 (762)
Q Consensus 337 Dt-~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~ 414 (762)
|+ .+++|++++.++..+.++...|. +. ......|+.|++|+++++ |+|||+|.
T Consensus 161 d~~~~~~I~~~~~~g~~~~~~~~~g~----~~---------------------~~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 161 DGYCNSRIVQFSPSGKFVTQWGEESS----GS---------------------SPRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp ECSSCCEEEEECTTSCEEEEECEECC----SS---------------------SCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred eCCCCCeEEEEcCCCCEEEEeccCCC----CC---------------------CCCCcccCCCcEEEEECCCCEEEEEEC
Confidence 97 79999999987777777744331 00 012345889999999998 99999999
Q ss_pred CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE
Q 004302 415 SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC 494 (762)
Q Consensus 415 gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA 494 (762)
+|++|++|+.++|.+...+...+. | ....... +.+ +..++. ++.+||+
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~-----~----------------------~~~~~~~---~~p-g~~~~~-~g~~~v~ 263 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASF-----G----------------------RNVFAIS---YIP-GFLFAV-NGKPYFG 263 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTT-----T----------------------TCEEEEE---EET-TEEEEE-ECCCCTT
T ss_pred CCCEEEEEECCCCcEEEEEecccc-----C----------------------CCcceee---ecC-CEEEEe-CCCEEec
Confidence 999999999986654433222110 0 0000011 111 233333 5679999
Q ss_pred ECCCCEEEEEECCCCcEEEEeeccccccCCCceeec
Q 004302 495 DIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF 530 (762)
Q Consensus 495 Dt~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~ 530 (762)
|..+++|++++..++.+...-..+.+.+..|..+..
T Consensus 264 ~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 264 DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299 (329)
T ss_dssp CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence 999999999998777655321122333444544433
No 35
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=99.83 E-value=2.2e-20 Score=177.71 Aligned_cols=134 Identities=7% Similarity=0.040 Sum_probs=114.8
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
-+.|+|.+.+.+|+.+++++++||++||+||++||++| +.++|.|++++++|++ ++||+|+.++ +
T Consensus 12 ~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~v~~v~v~~d~------~ 78 (165)
T 3or5_A 12 TPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPC-------RSEIPDMVQVQKTWASRGFTFVGIAVNE------Q 78 (165)
T ss_dssp CBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHH-------HHHHHHHHHHHHHHTTTTEEEEEEECSC------C
T ss_pred CCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHH-------HHHHHHHHHHHHHhccCCeEEEEEECCC------C
Confidence 45677888899999999999999999999999999876 9999999999999986 9999999886 7
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCcccccc---------Cce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCC
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNFPQMEN---------GAC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENS 233 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~~~~~y---------gv~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s 233 (762)
.+.+++|+++++++||++.|.. .+...| ++| +||||++|+++.+..|..+.++|++.|++++++....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~~~ 157 (165)
T 3or5_A 79 LPNVKNYMKTQGIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAATK 157 (165)
T ss_dssp HHHHHHHHHHHTCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHcCCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcccc
Confidence 8899999999999999999876 334444 456 49999999999999999999999999999998765553
No 36
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=99.83 E-value=2.8e-20 Score=170.15 Aligned_cols=127 Identities=16% Similarity=0.039 Sum_probs=114.7
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~ 166 (762)
+.|++.+.+.+|+.+++++++||++||+||++||++| +.++|.|++++++|++++|++|+.++ +.+.
T Consensus 4 ~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~~~~------~~~~ 70 (136)
T 1zzo_A 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTC-------QGEAPVVGQVAASHPEVTFVGVAGLD------QVPA 70 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEECSS------CHHH
T ss_pred CCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhH-------HHHHHHHHHHHHHcCCeEEEEEeCCC------CHHH
Confidence 3567888888999999999999999999999999876 99999999999999999999999886 6889
Q ss_pred HHHHHHhcCC-CcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 167 LVEMLMKEYI-TFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 167 v~~f~~k~~i-tfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+++|++++++ +||++.|....+.+.|++ | +++||++|+++ +..|..+.++|.+.|+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 71 MQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp HHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 9999999999 999999988877777765 4 58999999999 99999999999999998865
No 37
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=99.83 E-value=2.5e-20 Score=173.51 Aligned_cols=130 Identities=7% Similarity=-0.063 Sum_probs=112.1
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
.-+.|+|.+.+.+|+.+++++++||+|||+||++||++| +.++|.|++++++|++ ++|++|+.++
T Consensus 8 G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~v~v~~d~------ 74 (148)
T 3hcz_A 8 GKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHC-------QQETPKLYDWWLKNRAKGIQVYAANIER------ 74 (148)
T ss_dssp TSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTT-------CSHHHHHHHHHHHHGGGTEEEEEEECCS------
T ss_pred CCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccH-------HHHHHHHHHHHHHhccCCEEEEEEEecC------
Confidence 345677888888999999999999999999999999865 9999999999999986 9999999986
Q ss_pred CHHHHHHHHHhcCCC-cceeeCCCCc--cccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 163 DQTRLVEMLMKEYIT-FPILLSNKNF--PQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 163 ~~~~v~~f~~k~~it-fPVl~D~~~~--~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+.+.+++|+++++++ ||++.|.... +...|++ | ++|||++|+++.+..|..+.+++.+.+.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 75 KDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp SSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHhc
Confidence 567999999999999 9999998876 7777764 5 59999999999999998776666666666554
No 38
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=99.83 E-value=5.3e-20 Score=171.31 Aligned_cols=127 Identities=10% Similarity=0.050 Sum_probs=110.3
Q ss_pred CCCCceeecccCCCccccC--CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC-CC--eEEEEEEcCCCccC
Q 004302 86 FQGPHHLWFNIVEDNIHFF--KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF-PQ--LQVIGFLHGCSTIS 160 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Ls--d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y-~~--v~VvgV~~~~~~~~ 160 (762)
-+.|+|.+.+.+|+.++++ +++||++||+||++||++| +.++|.|.+++++| ++ ++|++|+.+.
T Consensus 9 ~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~~v~v~~d~---- 77 (148)
T 3fkf_A 9 KSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQ-------PEANAELKRLNKEYKKNKNFAMLGISLDI---- 77 (148)
T ss_dssp SBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCC-------HHHHHHHHHHHHHTTTCTTEEEEEEECCS----
T ss_pred CcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHH-------HHHhHHHHHHHHHhcCCCCeEEEEEECCC----
Confidence 4567788889999999999 9999999999999999865 99999999999999 65 9999999986
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCC---CCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSN---KNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~---~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+.+.+++|+++++++||++.|. ...+...|++ | ++|||++|+++.... +.+++++.|++++++
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~~ 147 (148)
T 3fkf_A 78 --DREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI---QGEALTGKLKELLKT 147 (148)
T ss_dssp --CHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC--
T ss_pred --CHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHcc
Confidence 6789999999999999999998 4456667765 4 599999999998876 778899999988754
No 39
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=185.43 Aligned_cols=132 Identities=9% Similarity=0.050 Sum_probs=108.7
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC--cC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS--AV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~--e~ 162 (762)
+.|+|++.+.+|++++|++++||+|||+|||+||+|| +.+||.|++++++|++ ++||+|+++. |.. .+
T Consensus 28 ~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C-------~~~~~~l~~l~~~~~~~~v~vv~is~d~-~~~~~~~ 99 (185)
T 2gs3_A 28 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKT-------EVNYTQLVDLHARYAECGLRILAFPCNQ-FGKQEPG 99 (185)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTEEEEEEECCT-TTTCCCS
T ss_pred CcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCch-------HHHHHHHHHHHHHhhcCCeEEEEEECcc-cCCCCCC
Confidence 4567888888999999999999999999999999866 9999999999999985 9999999873 211 13
Q ss_pred CHHHHHHHHHhcCCCcceee--CCCCcccc-cc----------C--------ce-EEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILL--SNKNFPQM-EN----------G--------AC-YLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~--D~~~~~~~-~y----------g--------v~-t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
+.+.+++|+++++++||++. |..+.... .| + +| +||||++|+++.+..|..+.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 179 (185)
T 2gs3_A 100 SNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 179 (185)
T ss_dssp CHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGG
T ss_pred CHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHH
Confidence 57889999999999999997 43332211 11 2 24 7999999999999999999999998
Q ss_pred HHHHHH
Q 004302 221 AVEELI 226 (762)
Q Consensus 221 ~l~~ll 226 (762)
.|++++
T Consensus 180 ~i~~lL 185 (185)
T 2gs3_A 180 DLPHYF 185 (185)
T ss_dssp GHHHHC
T ss_pred HHHHhC
Confidence 888764
No 40
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=99.82 E-value=2.6e-20 Score=173.06 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=116.7
Q ss_pred CCceee--cccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCH
Q 004302 88 GPHHLW--FNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 88 g~~~~w--~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~ 164 (762)
.|+|.+ .+.+|+.+++++++||++||+||++||++| ++++|.|++++++|++ ++|++|+.+. .....+.
T Consensus 7 ~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~~v~~~~-~~~~~~~ 78 (148)
T 2b5x_A 7 MPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLC-------KEAMPQVNEFRDKYQDQLNVVAVHMPR-SEDDLDP 78 (148)
T ss_dssp CCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTSEEEEEECCC-STTTSSH
T ss_pred CCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHH-------HHHhHHHHHHHHHhcCCcEEEEEEcCC-CccccCH
Confidence 455555 577888999999999999999999999866 9999999999999998 9999999875 2333478
Q ss_pred HHHHHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 165 TRLVEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+.+++|+++++++||++.|....+...|++ | +++||++|+++.+..|..+.++|.+.|++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 79 GKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp HHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999988877888865 4 589999999999999999999999999998875
No 41
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.4e-19 Score=201.73 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=135.9
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEE-EEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKIL-DCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~-~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
.+.+|.+|++++.+++|||+|.++|+|++++.++... ..+..+ ....|.||+++++++.|||+|..+|
T Consensus 224 ~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-----------~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 224 KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-----------DSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-----------SSSCCEEEEECTTSSEEEEEETTTT
T ss_pred cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-----------CCCcceeEEEcCCCCEEEEEECCCC
Confidence 4889999999987899999999999999999987655 333221 1246999999996666999999999
Q ss_pred eEEEEeCCC--CE---EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcc-eEEEc--------CCC
Q 004302 342 AIRRADMGR--RV---LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW-HLMKS--------EDD 407 (762)
Q Consensus 342 rIRkid~~~--g~---I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~-gIavd--------~dG 407 (762)
+|++++.++ +. +.+++|.. +..|.. .|. ...++|++|. +++++ ++|
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~--g~~g~~--------dg~----------~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQ--GAKDWV--------DGV----------GKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECT--TCBCCB--------CEE----------GGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred EEEEEeCCcccccccceEEEeccC--CCCCCC--------CCC----------CcceEeCCCcceEEEccccccccCCCC
Confidence 999998764 33 56788762 111210 111 1245799999 89994 569
Q ss_pred cEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEec
Q 004302 408 NLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAF 487 (762)
Q Consensus 408 ~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~ 487 (762)
+|||||++||||+++++ +|.+.++ +|.+. .|..+ ..++......+.+.|.+.+++..
T Consensus 353 ~lyvaD~~n~~I~~i~~-~G~v~~~-~g~g~----~~~~G-----------------~~dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 353 DFYFCDRENHCIRILTP-QGRVTTF-AGRGS----NGTSG-----------------YNDGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp EEEEEEGGGTEEEEECT-TSEEEEE-EECCT----TSSSS-----------------CBCEETTTTCBCSSEEEEEEETT
T ss_pred eEEEEECCCcEEEEECC-CCcEEEE-EeCCC----CCCCc-----------------ccCCCchhhcEeCCCcEEEEECC
Confidence 99999999999999996 4677776 45431 00000 00110111223345677777766
Q ss_pred CCEEEEEECCCCEEEEEECC
Q 004302 488 QNHILLCDIVGQRIMRLNRE 507 (762)
Q Consensus 488 ~g~LYVADt~NhRIrkidl~ 507 (762)
++.|||||++|||||+|+++
T Consensus 410 ~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 410 RECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEccC
Confidence 79999999999999999875
No 42
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.82 E-value=1e-18 Score=192.71 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=166.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc-----EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK-----ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~-----i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.+..|.+|++|+.++.||++|..+++|++++.+|. ....++ ..+..|.|||+|+.+++||++|
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~------------~~~~~p~glavD~~~~~lY~~d 177 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------------RDIQAPDGLAVDWIHSNIYWTD 177 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC------------SSCSCEEEEEEETTTTEEEEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe------------CCCCCcccEEEEecCCceEEEE
Confidence 47899999999889999999999999999999763 233332 2467899999998789999999
Q ss_pred CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECC-
Q 004302 338 SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRS- 415 (762)
Q Consensus 338 t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~g- 415 (762)
+++++|++++++++...++... .|..|.+|++|+ +|.||++|.+
T Consensus 178 ~~~~~I~~~~~~g~~~~~l~~~----------------------------------~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 178 SVLGTVSVADTKGVKRKTLFRE----------------------------------NGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp TTTTEEEEECTTTCSEEEEEEC----------------------------------SSCCEEEEEEETTTTEEEEEECSS
T ss_pred CCCCeEEEEeCCCCceEEEEeC----------------------------------CCCCcceEEEecccCeEEEEeCCC
Confidence 9999999999988776666422 156799999997 6999999987
Q ss_pred CCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEE
Q 004302 416 FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCD 495 (762)
Q Consensus 416 N~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVAD 495 (762)
+++|+++++++.....++.. + ...|.+.+++..++.||++|
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~-~--------------------------------------l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVTE-N--------------------------------------IQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp SCCEEEEETTSCSCEEEECS-S--------------------------------------CSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCccEEEEEC-C--------------------------------------CCceEEEEEEeCCCEEEEEE
Confidence 58999999987655444211 0 01235677777789999999
Q ss_pred CCCCEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCceeEEEEE--ecCCCcc
Q 004302 496 IVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNV--DIPSDTE 573 (762)
Q Consensus 496 t~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~~v~v--~~p~~~~ 573 (762)
+.+++|.++++++....++. .+.+.++.|..+...-+++|.... ....+.+++...|...-.+.. .-|.++.
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~-~~~~~l~~P~gl~v~~~~lywtd~-----~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 265 SKLHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTDI-----INEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TTTTEEEEEETTSCCCEEEE-ECSSTTSSEEEEEEETTEEEEEES-----SSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCCCEEEEEeCCCCccEEEE-eCCCCCCCCEEEEEeCCEEEEecC-----CCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 99999999999998777663 333456677766665556665442 235577777667765433333 3367777
Q ss_pred ccccc
Q 004302 574 LVESL 578 (762)
Q Consensus 574 l~~p~ 578 (762)
++.|+
T Consensus 339 v~~~~ 343 (400)
T 3p5b_L 339 LFHNL 343 (400)
T ss_dssp EESGG
T ss_pred EEeec
Confidence 77664
No 43
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.82 E-value=2.5e-20 Score=189.03 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=117.6
Q ss_pred CCCCceeecccCCCccccCCCCCC-EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC--
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGA-FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS-- 160 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK-~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~-- 160 (762)
-+.|+|.+.+.+|+.++|++++|| +|||+|||+||++| +.++|.|++++++|++ ++||+|+.++ +..
T Consensus 36 ~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~v~vv~Vs~d~-~~~~~ 107 (218)
T 3u5r_E 36 TRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFV-------VLIREALAKFAGDYAGQGLAVVAINSND-AQAFP 107 (218)
T ss_dssp CBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHH-------HTTHHHHHHHHHHHTTTTEEEEEEECSC-TTTCG
T ss_pred CcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccH-------HHHHHHHHHHHHHHHhCCcEEEEEECCc-ccccc
Confidence 356778888999999999999999 59999999999876 9999999999999986 9999999963 211
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEEec---------CCcCHHHHHHHHHHHHH
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVFHE---------NSLDIGMLNKAVEELIM 227 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~~~---------G~~~~~~L~~~l~~ll~ 227 (762)
+++.+.+++|+++++++||++.|....+.+.|++. +||||++|+++.+.. +..+.++|+++|++++.
T Consensus 108 ~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~ 187 (218)
T 3u5r_E 108 EETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLK 187 (218)
T ss_dssp GGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHc
Confidence 24789999999999999999999988888888764 599999999997642 34557889999999987
Q ss_pred hhcc
Q 004302 228 QQQE 231 (762)
Q Consensus 228 ~~~~ 231 (762)
....
T Consensus 188 ~~~~ 191 (218)
T 3u5r_E 188 GKDV 191 (218)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 6543
No 44
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=99.82 E-value=3.3e-20 Score=177.64 Aligned_cols=130 Identities=8% Similarity=0.037 Sum_probs=110.7
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC-----------
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC----------- 156 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~----------- 156 (762)
.|+|.+.+.+|+.++|++++||++||+||++||++| +.++|.|++++++|++++||+|+.+.
T Consensus 17 ~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C-------~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~ 89 (165)
T 3ha9_A 17 EASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSC-------VYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNK 89 (165)
T ss_dssp HHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTH-------HHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCS
T ss_pred CCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcch-------hhhHHHHHHHHHHcCCcEEEEEEeccccccccccccc
Confidence 456677788888999999999999999999999866 99999999999999999999999871
Q ss_pred -CccCcCCHHHHHHHHHhcCC-CcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCc-CHHHHHHHHHHHHH
Q 004302 157 -STISAVDQTRLVEMLMKEYI-TFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSL-DIGMLNKAVEELIM 227 (762)
Q Consensus 157 -~~~~e~~~~~v~~f~~k~~i-tfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~-~~~~L~~~l~~ll~ 227 (762)
.+....+.+.+++|++++++ +||++.| ...+.+.|++ | +||||++|+++. .|.. +.++|++.|++++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~ 164 (165)
T 3ha9_A 90 PGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQG 164 (165)
T ss_dssp TTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred ccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence 01112378999999999999 9999999 7777777865 4 599999999999 8888 88999999988764
No 45
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=184.87 Aligned_cols=131 Identities=9% Similarity=0.042 Sum_probs=107.5
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~ 162 (762)
+.|+|.+.+.+|++++|++++||+|||+|||+||++| +.+||.|++++++|++ ++||+|+++. +. ..+
T Consensus 26 ~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C-------~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~e~~ 97 (183)
T 2obi_A 26 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKT-------EVNYTQLVDLHARYAECGLRILAFPCNQ-FGKQEPG 97 (183)
T ss_dssp SGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTH-------HHHHHHHHHHHHHHGGGTEEEEEEECCC-STTCCCS
T ss_pred cccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCc-------HHHHHHHHHHHHHHhcCCeEEEEEECCC-CCCCCCC
Confidence 4567788888899999999999999999999999866 9999999999999985 9999999863 11 113
Q ss_pred CHHHHHHHHHhcCCCcceee--CCCCcccc-cc----------C--------ce-EEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILL--SNKNFPQM-EN----------G--------AC-YLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~--D~~~~~~~-~y----------g--------v~-t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
+.+.+++|+++++++||++. |.++.... .| + +| +||||++|+++.++.|..+.++|++
T Consensus 98 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 177 (183)
T 2obi_A 98 SNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 177 (183)
T ss_dssp CHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHT
T ss_pred CHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence 67899999999999999997 54443221 12 3 25 6999999999999999999888887
Q ss_pred HHHHH
Q 004302 221 AVEEL 225 (762)
Q Consensus 221 ~l~~l 225 (762)
.|+++
T Consensus 178 ~i~~l 182 (183)
T 2obi_A 178 DLPHY 182 (183)
T ss_dssp TSGGG
T ss_pred HHHHh
Confidence 77654
No 46
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=99.82 E-value=4.6e-20 Score=178.95 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=107.4
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
-+.|+|.+.|.+|+.++|++++||++||+|| ++||++| ..+||.|.+++++|++++||+|+.+. .
T Consensus 25 ~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C-------~~~~~~l~~~~~~~~~v~vv~Is~d~-------~ 90 (171)
T 2yzh_A 25 DRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVC-------ETETKKFNEIMAGMEGVDVTVVSMDL-------P 90 (171)
T ss_dssp SBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHH-------HHHHHHHHHHTTTCTTEEEEEEESSC-------H
T ss_pred CcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCch-------HHHHHHHHHHHHHcCCceEEEEeCCC-------H
Confidence 3567888899999999999999999999999 8999876 99999999999999559999999864 6
Q ss_pred HHHHHHHHhcCC-CcceeeC-CCCccccccCc------------e-EEEEcCCCCEEEEecC-----CcCHHHHHHHHHH
Q 004302 165 TRLVEMLMKEYI-TFPILLS-NKNFPQMENGA------------C-YLLSKDFGNARVFHEN-----SLDIGMLNKAVEE 224 (762)
Q Consensus 165 ~~v~~f~~k~~i-tfPVl~D-~~~~~~~~ygv------------~-t~lId~~G~iv~~~~G-----~~~~~~L~~~l~~ 224 (762)
+.+++|++++++ +||++.| .+..+ ++|++ | +||||++|+++..+.| ..+.+++.+.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ 169 (171)
T 2yzh_A 91 FAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKE 169 (171)
T ss_dssp HHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHh
Confidence 789999999999 9999999 77777 87864 4 6999999999998865 3445667777766
Q ss_pred HH
Q 004302 225 LI 226 (762)
Q Consensus 225 ll 226 (762)
|+
T Consensus 170 ll 171 (171)
T 2yzh_A 170 LI 171 (171)
T ss_dssp C-
T ss_pred hC
Confidence 53
No 47
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=99.82 E-value=4.5e-20 Score=180.53 Aligned_cols=133 Identities=10% Similarity=-0.020 Sum_probs=118.2
Q ss_pred CCCCCCCceeecccCC--CccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccC
Q 004302 83 FNEFQGPHHLWFNIVE--DNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTIS 160 (762)
Q Consensus 83 l~~l~g~~~~w~n~~g--~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~ 160 (762)
...-+.|+|.+.+.+| +.+++++++||+|||+||++||++| +.++|.|++++++ +++||+|+.++
T Consensus 31 ~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C-------~~~~~~l~~l~~~--~v~vv~vs~~d---- 97 (176)
T 3kh7_A 31 LIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSC-------RVEHPELTRLAEQ--GVVIYGINYKD---- 97 (176)
T ss_dssp TTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHH-------HHHHHHHHHHHHT--TCEEEEEEESC----
T ss_pred ccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHH-------HHHHHHHHHHHHC--CCEEEEEeCCC----
Confidence 3355678888999988 7899999999999999999999876 9999999999998 79999999876
Q ss_pred cCCHHHHHHHHHhcCCCcc-eeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 161 AVDQTRLVEMLMKEYITFP-ILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfP-Vl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
+.+.+++|+++++++|| ++.|.+..+...|++ | +||||++|+++....|..+.+++++.|++++++..
T Consensus 98 --~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 98 --DNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp --CHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999998 577888777777764 5 69999999999999999999999999999988754
No 48
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=99.82 E-value=3.4e-20 Score=178.76 Aligned_cols=125 Identities=7% Similarity=-0.123 Sum_probs=104.7
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
-+.|+|.+.|.+|++++|++++||+|||+||+ +||++| ..|||.|++++++|++++||+|+.+. .
T Consensus 20 ~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C-------~~~~~~l~~~~~~~~~v~vv~is~d~-------~ 85 (163)
T 1psq_A 20 DKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGIC-------STQTRRFNEELAGLDNTVVLTVSMDL-------P 85 (163)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHH-------HHHHHHHHHHTTTCTTEEEEEEESSC-------H
T ss_pred CCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCcc-------HHHHHHHHHHHHHcCCcEEEEEECCC-------H
Confidence 35678888899999999999999999999995 999876 99999999999999559999999863 6
Q ss_pred HHHHHHHHhcCC-CcceeeC-CCCccccccCc---------e-EEEEcCCCCEEEEecCCc-----CHHHHHHHHHH
Q 004302 165 TRLVEMLMKEYI-TFPILLS-NKNFPQMENGA---------C-YLLSKDFGNARVFHENSL-----DIGMLNKAVEE 224 (762)
Q Consensus 165 ~~v~~f~~k~~i-tfPVl~D-~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~-----~~~~L~~~l~~ 224 (762)
+.+++|++++++ +||++.| .+..+.++|++ | +||||++|+++..+.|.. +.+++.+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 86 FAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp HHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 789999999999 9999999 77777777654 4 699999999999987742 23455555543
No 49
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.82 E-value=3.1e-20 Score=178.40 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=108.8
Q ss_pred CCCCceeecccCCCccccCCCCCCE-EEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCc
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAF-LVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISA 161 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~-VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e 161 (762)
-+.|+|.+.+.+|+.++|++++||+ |||+|| |+||++| +.+||.|++++++|++ ++||+|+.+
T Consensus 6 ~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C-------~~~~~~l~~~~~~~~~~~v~vv~vs~d------ 72 (161)
T 3drn_A 6 DKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGS-------TREASAFRDNWDLLKDYDVVVIGVSSD------ 72 (161)
T ss_dssp SBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHH-------HHHHHHHHHTHHHHHTTCEEEEEEESC------
T ss_pred CcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCch-------HHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence 3577889999999999999999998 999999 9999877 9999999999999975 999999986
Q ss_pred CCHHHHHHHHHhcCCCcceeeCCCCccccccC-------ce-EEEEcCCCCEEEEecCCcC----HHHHHHHHHHHHHh
Q 004302 162 VDQTRLVEMLMKEYITFPILLSNKNFPQMENG-------AC-YLLSKDFGNARVFHENSLD----IGMLNKAVEELIMQ 228 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfPVl~D~~~~~~~~yg-------v~-t~lId~~G~iv~~~~G~~~----~~~L~~~l~~ll~~ 228 (762)
+.+.+++|+++++++||++.|.+..+.+.|+ +| +||||++|+++..+.|... .+++.+.|+++..+
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 73 -DINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp -CHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhh
Confidence 4789999999999999999998887777775 46 6999999999999999433 23344444444443
No 50
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.82 E-value=2.2e-20 Score=183.90 Aligned_cols=138 Identities=7% Similarity=-0.027 Sum_probs=118.4
Q ss_pred CCCceeec-ccCCCccccCCCCCC-EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--C
Q 004302 87 QGPHHLWF-NIVEDNIHFFKRGGA-FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--S 160 (762)
Q Consensus 87 ~g~~~~w~-n~~g~~v~Lsd~rGK-~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~ 160 (762)
+.|+|.+. +.+|+.++|++++|| +|||+|||+||++| +.++|.|++++++|++ ++||+|+.+. .. .
T Consensus 23 ~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~v~vv~v~~d~-~~~~~ 94 (196)
T 2ywi_A 23 QAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFV-------KHVQHELVRLANDYMPKGVSFVAINSND-AEQYP 94 (196)
T ss_dssp BCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHH-------HHHHHHHHHHHHHHGGGTCEEEEEECSC-TTTCG
T ss_pred cCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccH-------HHHHHHHHHHHHHHHhCCcEEEEEECCc-ccccc
Confidence 46678888 889999999999999 59999999999876 9999999999999985 9999999864 11 0
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEE---------ecCCcCHHHHHHHHHHHHH
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVF---------HENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~---------~~G~~~~~~L~~~l~~ll~ 227 (762)
+++.+.+++|+++++++||++.|....+.+.|++. +||||++|+++.+ +.|..+.++|++.|++++.
T Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~ 174 (196)
T 2ywi_A 95 EDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE 174 (196)
T ss_dssp GGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence 14788999999999999999999888888888764 5999999999998 4577788999999999998
Q ss_pred hhccC
Q 004302 228 QQQEN 232 (762)
Q Consensus 228 ~~~~~ 232 (762)
....+
T Consensus 175 ~~~~~ 179 (196)
T 2ywi_A 175 GRPVP 179 (196)
T ss_dssp TCCCC
T ss_pred CCCCC
Confidence 75433
No 51
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=99.81 E-value=1e-19 Score=168.43 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=113.7
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAV 162 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~ 162 (762)
.-+.|+|.+.+.+|+.+++++ +||++||+||++||++| +.++|.|++++++|+ +++|++|+.+. .+.
T Consensus 12 g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~v~~d~---~~~ 80 (145)
T 3erw_A 12 PAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPC-------KKELPQFQSFYDAHPSDSVKLVTVNLVN---SEQ 80 (145)
T ss_dssp CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHH-------HHHHHHHHHHHHHCCCSSEEEEEEECGG---GSS
T ss_pred CCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHcCCCCEEEEEEEccC---CcC
Confidence 345778899999999999999 99999999999999876 999999999999998 39999999875 234
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
+.+.+++|+++++++||++.|....+...|++. ++|||++|+++....|..+.++|.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 81 NQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp CHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence 789999999999999999999988888888764 499999999999999999999888776
No 52
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=99.81 E-value=1.8e-20 Score=180.39 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=109.2
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCC-CccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCc
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNC-DSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISA 161 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~-pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e 161 (762)
+.|+|.+.+.+|+.++|++++||+|||+|||+||+ +| ..++|.|.+++++|++ ++||+|+.+. ..
T Consensus 12 ~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C-------~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~ 81 (174)
T 1xzo_A 12 EVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETIC-------PPMTAHMTDLQKKLKAENIDVRIISFSVDP---EN 81 (174)
T ss_dssp ECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCC-------CSHHHHHHHHHHHHHHTTCCCEEEEEESCT---TT
T ss_pred ccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchh-------HHHHHHHHHHHHHhhhcCCcEEEEEEEeCC---CC
Confidence 46778888999999999999999999999999998 55 9999999999998862 9999999874 12
Q ss_pred CCHHHHHHHHHhcCCCc---ceeeCCCCcccccc-------------------Cce-EEEEcCCCCEEEEecCCc--CHH
Q 004302 162 VDQTRLVEMLMKEYITF---PILLSNKNFPQMEN-------------------GAC-YLLSKDFGNARVFHENSL--DIG 216 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itf---PVl~D~~~~~~~~y-------------------gv~-t~lId~~G~iv~~~~G~~--~~~ 216 (762)
++.+.+++|+++++++| |++.|.+......| ..| +||||++|+++.++.|.. +.+
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~ 161 (174)
T 1xzo_A 82 DKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYD 161 (174)
T ss_dssp CCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHH
T ss_pred CCHHHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHH
Confidence 36889999999999999 88888654322222 234 599999999999999986 478
Q ss_pred HHHHHHHHHHHh
Q 004302 217 MLNKAVEELIMQ 228 (762)
Q Consensus 217 ~L~~~l~~ll~~ 228 (762)
+|.+.|++++++
T Consensus 162 ~l~~~l~~ll~~ 173 (174)
T 1xzo_A 162 DIISDVKSASTL 173 (174)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHhc
Confidence 899999888753
No 53
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.81 E-value=4.2e-18 Score=181.32 Aligned_cols=224 Identities=15% Similarity=0.067 Sum_probs=160.6
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc----E-EEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK----I-LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~----i-~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.+..|.++++|+.+++||++|..+++|++++.+|. . ...+ ...+..|.||++|+.+++||++|
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~------------~~~~~~p~glavd~~~~~ly~~d 95 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------------SRDIQAPDGLAVDWIHSNIYWTD 95 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE------------CSSCSCCCEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE------------eCCCCCcCEEEEeecCCeEEEEE
Confidence 47899999999888999999999999999999873 1 1222 12467899999997789999999
Q ss_pred CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCC
Q 004302 338 SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSF 416 (762)
Q Consensus 338 t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN 416 (762)
..+++|.++++++....++... .+..|.+|++|+ +|.||++|.++
T Consensus 96 ~~~~~I~~~~~~g~~~~~~~~~----------------------------------~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 96 SVLGTVSVADTKGVKRKTLFRE----------------------------------NGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp TTTTEEEEEETTSSSEEEEEEC----------------------------------TTCCEEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEeCCCCceEEEEEC----------------------------------CCCCcceEEeCCCCCEEEEEccCC
Confidence 9999999999987766665321 155799999997 69999999986
Q ss_pred -CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEE
Q 004302 417 -ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCD 495 (762)
Q Consensus 417 -~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVAD 495 (762)
++|+++++++.....+... + ...+.+.+++..++.||++|
T Consensus 142 ~~~I~~~~~dG~~~~~~~~~-~--------------------------------------~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 142 PAKIKKGGLNGVDIYSLVTE-N--------------------------------------IQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SCEEEEEETTSCCEEEEECS-S--------------------------------------CSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEcCCCCCeEEEEEC-C--------------------------------------CCCceEEEEeccCCEEEEEE
Confidence 8999999876554333210 0 11234577777789999999
Q ss_pred CCCCEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCceeEEE--EEecCCCcc
Q 004302 496 IVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKV--NVDIPSDTE 573 (762)
Q Consensus 496 t~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~~v--~v~~p~~~~ 573 (762)
+.+++|.++++++....++.- ..+.++.|..+...-+++|.... ....+.+++...|+..-.+ .+.-|.|+.
T Consensus 183 ~~~~~I~~~d~dg~~~~~~~~-~~~~~~~P~giav~~~~ly~~d~-----~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~ 256 (316)
T 1ijq_A 183 SKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFEDKVFWTDI-----INEAIFSANRLTGSDVNLLAENLLSPEDMV 256 (316)
T ss_dssp TTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEETTEEEEEET-----TTTEEEEEETTTCCCCEEEECSCSCCCCEE
T ss_pred CCCCeEEEEecCCCceEEEee-cCCccCCcEEEEEECCEEEEEEC-----CCCeEEEEeCCCCcceEEEecCCCCceEEE
Confidence 999999999999877666532 22345667666554455664432 2356777777667643222 234477777
Q ss_pred cccc
Q 004302 574 LVES 577 (762)
Q Consensus 574 l~~p 577 (762)
+..|
T Consensus 257 v~~~ 260 (316)
T 1ijq_A 257 LFHN 260 (316)
T ss_dssp EESG
T ss_pred Eecc
Confidence 7665
No 54
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=99.81 E-value=7.6e-20 Score=172.31 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=115.1
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
.-+.|+|.+.+.+|+.+++++++||++||+||++||++| ..++|.|.+++++|++ ++|++|+.+. .
T Consensus 5 G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~v~~d~-----~ 72 (154)
T 3kcm_A 5 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPC-------REEIPSMMRLNAAMAGKPFRMLCVSIDE-----G 72 (154)
T ss_dssp TSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTSSEEEEEEECCT-----T
T ss_pred CCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhccCCeEEEEEEcCC-----c
Confidence 346778999999999999999999999999999999876 9999999999999986 9999999886 2
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccC---ce-EEEEcCCCCEEEEecCCc--CHHHHHHHHHHHHHhhccC
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSL--DIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~--~~~~L~~~l~~ll~~~~~~ 232 (762)
+.+.+++|+++++++||++.|....+...|+ +| +||||++|+++.++.|.. +.+++.+.|+++..+...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~~ 148 (154)
T 3kcm_A 73 GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREG 148 (154)
T ss_dssp HHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-------
T ss_pred chHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999887777775 45 699999999999999986 5568888888877765433
No 55
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.81 E-value=1e-18 Score=195.08 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=152.1
Q ss_pred cccCCcceEEEccC--CCEEEEEeCCCcEEEEEcC-CCcEEEEecCC---CCC---CCC---------------------
Q 004302 262 LLLHFPGCISADES--GNRLFLSDSNHHRIIVFDG-NGKILDCIGSC---PGF---EDG--------------------- 311 (762)
Q Consensus 262 ~~L~~P~gIAVD~s--~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG---~G~---~DG--------------------- 311 (762)
++|+.|.+|++|+. +++|||+|.. |+|++||. +|++...++.. .+. .+|
T Consensus 136 ~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 136 GAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred cccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 48999999999973 6999999998 99999998 77777666431 000 011
Q ss_pred --c----ccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCC
Q 004302 312 --E----FESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDND 384 (762)
Q Consensus 312 --~----~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~ 384 (762)
. ...+.|+.|.||++++++++|||+|..+++|++|++.++.+ .++...+.
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~----------------------- 271 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT----------------------- 271 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----------------------
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----------------------
Confidence 0 01236789999999987899999999999999999986766 55543320
Q ss_pred CccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEECC--CCcEE--EEEcCC-ceeeEEeceehhhhhhhhccCC
Q 004302 385 TKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLA--SGEIK--EAVKGF-SKVLEICGVLVMEKVFLLKQMP 458 (762)
Q Consensus 385 ~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d~~--~g~I~--ti~~G~-g~~~~~~G~~~~~r~~~~~~~p 458 (762)
...|.+|+++++|+ |||+|.++|+|++++.+ ++.+. ..++|. +. .|.
T Consensus 272 ----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~----~g~------------- 324 (433)
T 4hw6_A 272 ----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSS----PGW------------- 324 (433)
T ss_dssp ----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTC----CCC-------------
T ss_pred ----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCC----Ccc-------------
Confidence 11466899999987 99999999999998876 34321 122332 10 010
Q ss_pred ccccccccCCcccccCCCCcceeeeEE--------ecCCEEEEEECCCCEEEEEECCCCcEEEEeecc--------cccc
Q 004302 459 QDWLLHQIDSSCSLKELPYAGLISSSI--------AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSN--------FAIL 522 (762)
Q Consensus 459 ~~~~~~~~d~~~~~~~~p~~~lgsav~--------~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~--------~G~l 522 (762)
.++.+ .......|.+.++. ..+++|||||+.||||++|+.+ |.++++...+ .|.+
T Consensus 325 -------~dg~~-~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~ 395 (433)
T 4hw6_A 325 -------VDGMG-TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGEL 395 (433)
T ss_dssp -------BCEEG-GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEET
T ss_pred -------CCCcc-cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCcc
Confidence 01111 11222344566662 4578999999999999999975 4777765432 2223
Q ss_pred CCCceeeccccceee-c-cc-ccCCCccccceeee
Q 004302 523 GLPYWFAFPLERVYA-V-AG-GHQGSWTDHIQRCS 554 (762)
Q Consensus 523 G~p~~~~~pl~~v~~-~-~~-~~~g~~~~~~~~~~ 554 (762)
+....|..|....+. - +. .+.++.++++|+++
T Consensus 396 ~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 396 RSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp TTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred ccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 334445555554444 1 11 23445556666554
No 56
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.81 E-value=2.5e-18 Score=205.46 Aligned_cols=225 Identities=15% Similarity=0.082 Sum_probs=168.4
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc-----EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK-----ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~-----i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.+..|.+|++|..+++||++|..+++|++++.+|. ...+++ ..+..|.|||+|+.+++|||+|
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~------------~~l~~P~GLAvD~~~~~LY~tD 489 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------------RDIQAPDGLAVDWIHSNIYWTD 489 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC------------SSCSCCCEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe------------cCCCCcceeeeeecCCcEEEEe
Confidence 58899999999888999999999999999999873 233332 2477899999998788999999
Q ss_pred CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCC
Q 004302 338 SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSF 416 (762)
Q Consensus 338 t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN 416 (762)
+++++|+++++++....+++.. .|..|.|||||+. |.||++|.++
T Consensus 490 ~~~~~I~v~~ldG~~~~~l~~~----------------------------------~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 490 SVLGTVSVADTKGVKRKTLFRE----------------------------------NGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp TTTTEEEEEETTSSSEEEEEEC----------------------------------TTCCEEEEEEETTTTEEEEEECSS
T ss_pred cCCCeEEEEeCCCCeEEEEEeC----------------------------------CCCCcceEEEecCCCCEEEecCCC
Confidence 9999999999988877777432 1567999999985 9999999987
Q ss_pred -CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEE
Q 004302 417 -ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCD 495 (762)
Q Consensus 417 -~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVAD 495 (762)
++|+++++++....+++.. + ...|.+++++..++.||++|
T Consensus 536 ~~~I~~~~~dG~~~~~lv~~-~--------------------------------------l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 536 PAKIKKGGLNGVDIYSLVTE-N--------------------------------------IQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp SCEEEEEETTSCCEEEEECS-S--------------------------------------CSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEecCCCceEEEEeC-C--------------------------------------CCCceEEEEecCCCeEEEEe
Confidence 8999999987766554311 0 11235677777789999999
Q ss_pred CCCCEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCcee--EEEEEecCCCcc
Q 004302 496 IVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID--IKVNVDIPSDTE 573 (762)
Q Consensus 496 t~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~--~~v~v~~p~~~~ 573 (762)
..+++|.++++++....++. ++.+.+..|+.+..--+++|... ...+.+++++...|... +...+.-|.|+.
T Consensus 577 ~~~~~I~~~d~dG~~~~~v~-~~~~~l~~P~glav~~~~lYwtD-----~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~ 650 (791)
T 3m0c_C 577 SKLHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTD-----IINEAIFSANRLTGSDVNLLAENLLSPEDMV 650 (791)
T ss_dssp TTTTEEEEEETTSCSCEEEE-ECTTTTSSEEEEEEETTEEEEEE-----TTTTEEEEEETTTCCCCEEEECSCSCCCCEE
T ss_pred CCCCcEEEEecCCCceEEEe-cCCCccCCCCEEEEeCCEEEEEE-----CCCCEEEEEeCCCCcceEEeecCCCCceeEe
Confidence 99999999999998877764 33344556666555444566543 23466777777677543 323345699999
Q ss_pred ccccc
Q 004302 574 LVESL 578 (762)
Q Consensus 574 l~~p~ 578 (762)
++.|+
T Consensus 651 v~h~~ 655 (791)
T 3m0c_C 651 LFHNL 655 (791)
T ss_dssp EESGG
T ss_pred eeccc
Confidence 88775
No 57
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.81 E-value=1.8e-18 Score=189.58 Aligned_cols=224 Identities=16% Similarity=0.109 Sum_probs=165.1
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.+|++|+.++.||++|..+++|++++.+|.....+.. ..+..|.||++|+.++.||++|..+++
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-----------~~~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-----------TGLESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-----------SSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-----------CCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence 477899999998899999999999999999998864433321 135679999999878999999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCC-CEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSF-ETLW 420 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN-~rI~ 420 (762)
|.++++++....++.. ..|..|.+|++|+ +|.||++|.++ ++|+
T Consensus 183 I~~~~~dg~~~~~l~~----------------------------------~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 183 IEVANLDGAHRKVLLW----------------------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp EEECBTTSCSCEEEEC----------------------------------SSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred EEEEeCCCCceEEeec----------------------------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 9999987665444421 1266899999996 58999999999 9999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
++++++.....+.. .+ ...|.+++++..++.||++|+.+++
T Consensus 229 r~~~dG~~~~~~~~-~~--------------------------------------~~~PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 229 ASSMDGSGRRIIAD-TH--------------------------------------LFWPNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp EEETTSCSCEEEEC-SS--------------------------------------CSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred EEeCCCCCcEEEEE-CC--------------------------------------CCCeeeEEEeCCCCEEEEEECCCCE
Confidence 99998765444321 11 0123467777788999999999999
Q ss_pred EEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCcee--EEEEEecCCCccccccc
Q 004302 501 IMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID--IKVNVDIPSDTELVESL 578 (762)
Q Consensus 501 Irkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~--~~v~v~~p~~~~l~~p~ 578 (762)
|.++++++....++...+ ++.|..+...-+.+|.... ....+++++...|+.. |...+.-|.|+.++.|.
T Consensus 270 I~~~d~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~-----~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~ 341 (386)
T 3v65_B 270 IERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDW-----HTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ 341 (386)
T ss_dssp EEEECTTSCSCEEEECSS---CSSEEEEEEETTEEEEEET-----TTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGG
T ss_pred EEEEeCCCCeeEEEEECC---CCCceEEEEECCEEEEeeC-----CCCeEEEEECCCCcceEEEccCCCCCceEEEEchh
Confidence 999999987665553222 5667776665556665432 2345677776666653 33334557888877664
No 58
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=99.81 E-value=1.1e-19 Score=178.89 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=116.4
Q ss_pred CCCceeecccCCC----ccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCcc
Q 004302 87 QGPHHLWFNIVED----NIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTI 159 (762)
Q Consensus 87 ~g~~~~w~n~~g~----~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~ 159 (762)
+.|+|.+.+.+|+ +++|++++||++||+|| |+||++| ..+||.|++++++|+ +++||+|+.+.
T Consensus 6 ~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C-------~~~~~~l~~~~~~~~~~~v~vv~vs~d~--- 75 (187)
T 1we0_A 6 EVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVC-------PTELEDVQKEYAELKKLGVEVYSVSTDT--- 75 (187)
T ss_dssp BCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSC-------THHHHHHHHHHHHHHHTTEEEEEEESSC---
T ss_pred cCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcch-------HHHHHHHHHHHHHHHHcCCEEEEEECCC---
Confidence 4678889999999 99999999999999999 9999866 999999999999997 49999999874
Q ss_pred CcCCHHHHHHHHHhc----CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCc----CHHHHHHH
Q 004302 160 SAVDQTRLVEMLMKE----YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSL----DIGMLNKA 221 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~----~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~----~~~~L~~~ 221 (762)
.+.+++|++++ +++||++.|.+..+.+.|++ | +||||++|+++.++.|.. +.++|.+.
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~ 151 (187)
T 1we0_A 76 ----HFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINK 151 (187)
T ss_dssp ----HHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHH
T ss_pred ----HHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 67889999998 89999999988777777765 3 599999999999988865 67889999
Q ss_pred HHHHHHhhccCCCCCCCccchhhhhhhhccC
Q 004302 222 VEELIMQQQENSSSPSGLKCTWAKQAEVLKE 252 (762)
Q Consensus 222 l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~~ 252 (762)
|++++....-| ...-+..|...+++++.
T Consensus 152 l~~l~~~~~~~---~~~~p~~w~~~~~~~~~ 179 (187)
T 1we0_A 152 VKAAQYVRENP---GEVCPAKWEEGGETLKP 179 (187)
T ss_dssp HHHHHHHHTST---TCCC-------------
T ss_pred HHHHhhhhhCC---CcccccccccCCceeec
Confidence 99988764322 34555778877777774
No 59
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=99.81 E-value=2.5e-20 Score=178.83 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=109.1
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCC-ccCCCCcchhhcHHHHHHHHHCC-----CeEEEEEEcCCCccC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCD-SLIAGCGTVVTFEKVKSIQQSFP-----QLQVIGFLHGCSTIS 160 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~p-C~~p~C~~~~emP~L~~L~~~y~-----~v~VvgV~~~~~~~~ 160 (762)
+.|+|.+.|.+| .++|++++||+|||+|||+||+| | +.++|.|.+++++|+ +++||+|+++. .
T Consensus 15 ~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C-------~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~---~ 83 (172)
T 2k6v_A 15 KPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVC-------PTTLLALKRAYEKLPPKAQERVQVIFVSVDP---E 83 (172)
T ss_dssp EECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHH-------HHHHHHHHHHHTTSCHHHHTTEEEEEEESCT---T
T ss_pred CCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchh-------HHHHHHHHHHHHHhhhhccCCEEEEEEEECC---C
Confidence 367889999999 99999999999999999999986 6 999999999999998 59999999874 1
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCC---CccccccC------------------ce-EEEEcCCCCEEEEecCCc--CHH
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNK---NFPQMENG------------------AC-YLLSKDFGNARVFHENSL--DIG 216 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~---~~~~~~yg------------------v~-t~lId~~G~iv~~~~G~~--~~~ 216 (762)
.++.+.+++|+++++++||++.|.. ..+.++|+ +| +|||| +|+++.++.|.. +.+
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~ 162 (172)
T 2k6v_A 84 RDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATD 162 (172)
T ss_dssp TCCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHH
T ss_pred CCCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHH
Confidence 2467899999999999999999976 23433443 34 59999 999999999988 888
Q ss_pred HHHHHHHHH
Q 004302 217 MLNKAVEEL 225 (762)
Q Consensus 217 ~L~~~l~~l 225 (762)
+|.+.|+++
T Consensus 163 ~l~~~l~~l 171 (172)
T 2k6v_A 163 RVVADLQAL 171 (172)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 888888765
No 60
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=99.81 E-value=5.4e-20 Score=182.11 Aligned_cols=148 Identities=7% Similarity=-0.048 Sum_probs=119.5
Q ss_pred CCCceeeccc-CC--CccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccC
Q 004302 87 QGPHHLWFNI-VE--DNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTIS 160 (762)
Q Consensus 87 ~g~~~~w~n~-~g--~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~ 160 (762)
+.|+|.+.+. +| ++++|++++||+|||+||+ +||++| ..|||.|++++++|+ +++||+|+.+.
T Consensus 6 ~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C-------~~e~~~l~~~~~~~~~~~v~vv~Is~d~---- 74 (186)
T 1n8j_A 6 KIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVS-------PTELGDVADHYEELQKLGVDVYSVSTDT---- 74 (186)
T ss_dssp BCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHH-------HHHHHHHHHHHHHHHHTTEEEEEEESSC----
T ss_pred cCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCcc-------HHHHHHHHHHHHHHHHCCCEEEEEECCC----
Confidence 5677888888 48 8999999999999999995 999876 999999999999997 49999999864
Q ss_pred cCCHHHHHHHHHhc----CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCc----CHHHHHHHH
Q 004302 161 AVDQTRLVEMLMKE----YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSL----DIGMLNKAV 222 (762)
Q Consensus 161 e~~~~~v~~f~~k~----~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~----~~~~L~~~l 222 (762)
.+.+++|++++ +++||++.|.+..+.++||+ | +||||++|+++..+.|.. +.+++.+.|
T Consensus 75 ---~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l 151 (186)
T 1n8j_A 75 ---HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 151 (186)
T ss_dssp ---HHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred ---HHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 67889999999 89999999988877888875 4 599999999999988764 477888899
Q ss_pred HHHHHhhccCCCCCCCccchhhhhhhhcc
Q 004302 223 EELIMQQQENSSSPSGLKCTWAKQAEVLK 251 (762)
Q Consensus 223 ~~ll~~~~~~s~~~~~~~~~~~~~~~~~~ 251 (762)
+.|+....-| .-.-+.-|....++++
T Consensus 152 ~~l~~~~~~p---~~~~p~~w~~~~~~~~ 177 (186)
T 1n8j_A 152 KAAQYVAAHP---GEVCPAKWKEGEATLA 177 (186)
T ss_dssp HHHHHHHHST---TCBBCTTCCTTSCCBC
T ss_pred HHHHHHhhcC---CCccCCCCCCCCcccc
Confidence 8887643322 1222344655455544
No 61
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1e-19 Score=198.64 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=121.1
Q ss_pred CCCcee-----ecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 87 QGPHHL-----WFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 87 ~g~~~~-----w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
+.|+|. +.+.+|+.++|++++||+|||+|||+||+|| ++++|.|++++++|++ ++||+|+++. +.
T Consensus 56 ~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C-------~~~~p~L~~l~~~~~~~~v~vi~Vs~d~-~~ 127 (352)
T 2hyx_A 56 TAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINC-------QRAIPHVVGWYQAYKDSGLAVIGVHTPE-YA 127 (352)
T ss_dssp BCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHGGGTEEEEEEECCS-SG
T ss_pred cCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhH-------HHHHHHHHHHHHHhhcCCeEEEEEECCc-cc
Confidence 455666 5678999999999999999999999999876 9999999999999985 9999999875 44
Q ss_pred CcCCHHHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 160 SAVDQTRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.+++.+.+++|+++++++||++.|....+.+.|++. +||||++|+++.++.|..+.++|++.|++++.+..
T Consensus 128 ~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~~ 202 (352)
T 2hyx_A 128 FEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAK 202 (352)
T ss_dssp GGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence 446789999999999999999999988888888764 49999999999999999999999999999998764
No 62
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=99.81 E-value=5.7e-20 Score=175.19 Aligned_cols=118 Identities=7% Similarity=-0.026 Sum_probs=101.7
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
-+.|+|.+.+.+|+.++|++++||+|||+|||+||+|| +.++|.|++++++|++ ++||+|+.+. .
T Consensus 13 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C-------~~~~~~l~~l~~~~~~~~~~vv~i~~d~------~ 79 (152)
T 2lrt_A 13 ASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMS-------AAHNLALRELYNKYASQGFEIYQISLDG------D 79 (152)
T ss_dssp TCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHGGGTEEEEEEECSC------C
T ss_pred CCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhh-------HHHHHHHHHHHHHhccCCeEEEEEEccC------C
Confidence 34677888889999999999999999999999999876 9999999999999986 9999999987 5
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCc---cccccCc---e-EEEEcCCCCEEEEecCCcCHHHH
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNF---PQMENGA---C-YLLSKDFGNARVFHENSLDIGML 218 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~---~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L 218 (762)
.+.+++|+++ ++||++.|.+.. +...|++ | +||||++|+++.+..|..++++.
T Consensus 80 ~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~ 139 (152)
T 2lrt_A 80 EHFWKTSADN--LPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEA 139 (152)
T ss_dssp HHHHHHHHTT--CSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCSCHHHH
T ss_pred HHHHHHHHhC--CCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecCCHHHHHHH
Confidence 6778888754 889999998875 6677764 5 59999999999999998775443
No 63
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=99.81 E-value=3.8e-20 Score=178.95 Aligned_cols=123 Identities=8% Similarity=-0.069 Sum_probs=103.4
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQT 165 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~ 165 (762)
+.|+|.+.|.+|+.++|++++||+|||+|| ++||++| ..|||.|++++++|++++||+|+.+ +.+
T Consensus 22 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C-------~~e~~~l~~~~~~~~~v~vv~Is~d-------~~~ 87 (165)
T 1q98_A 22 IVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVC-------ATSVRKFNQQAAKLSNTIVLCISAD-------LPF 87 (165)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCC-------CHHHHHHHHHHHHSTTEEEEEEESS-------CHH
T ss_pred CCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCcc-------HHHHHHHHHHHHHcCCCEEEEEeCC-------CHH
Confidence 467788889999999999999999999999 8999865 9999999999999966999999976 467
Q ss_pred HHHHHHHhcCC-CcceeeCC-CCccccccCc------------e-EEEEcCCCCEEEEecCC--cCHHHHHHHHH
Q 004302 166 RLVEMLMKEYI-TFPILLSN-KNFPQMENGA------------C-YLLSKDFGNARVFHENS--LDIGMLNKAVE 223 (762)
Q Consensus 166 ~v~~f~~k~~i-tfPVl~D~-~~~~~~~ygv------------~-t~lId~~G~iv~~~~G~--~~~~~L~~~l~ 223 (762)
.+++|++++++ +||++.|. +..+.++|++ | +||||++|+++..+.|. ....++++.++
T Consensus 88 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1q98_A 88 AQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA 162 (165)
T ss_dssp HHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred HHHHHHHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence 88999999999 79999997 6666777765 5 69999999999998753 23334555544
No 64
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=99.81 E-value=6.5e-20 Score=175.51 Aligned_cols=123 Identities=10% Similarity=0.023 Sum_probs=104.4
Q ss_pred CCCCCcee--ecccCCCccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 85 EFQGPHHL--WFNIVEDNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 85 ~l~g~~~~--w~n~~g~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
.-+.|+|. +.|.+|++++|++++||+|||+||+ +||++| ..+||.|++++++|++ ++||+|+.+
T Consensus 10 G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C-------~~~~~~l~~~~~~~~~~~~~vv~vs~d---- 78 (163)
T 3gkn_A 10 ELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGA-------TTEGLDFNALLPEFDKAGAKILGVSRD---- 78 (163)
T ss_dssp CCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHH-------HHHHHHHHHHHHHHHHTTCEEEEEESS----
T ss_pred CCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcH-------HHHHHHHHHHHHHHHHCCCEEEEEeCC----
Confidence 34566788 8888999999999999999999998 999876 9999999999999974 999999986
Q ss_pred CcCCHHHHHHHHHhcCCCcceeeCCCCccccccCc---------------e-EEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 160 SAVDQTRLVEMLMKEYITFPILLSNKNFPQMENGA---------------C-YLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---------------~-t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
+.+.+++|+++++++||++.|.+..+.++|++ | +||||++|+++..+.+....+.+++.
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~i 153 (163)
T 3gkn_A 79 ---SVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAV 153 (163)
T ss_dssp ---CHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHH
T ss_pred ---CHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHH
Confidence 47899999999999999999988877777764 4 59999999999988665443333333
No 65
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=99.80 E-value=2.1e-19 Score=168.96 Aligned_cols=133 Identities=7% Similarity=0.042 Sum_probs=116.5
Q ss_pred CCC-ceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 87 QGP-HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 87 ~g~-~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
+.| +|.+.+.+|+.+++++++||++||+||++||++| +.++|.|++++++|++ ++|++|+.+. +
T Consensus 8 ~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~v~v~~d~------~ 74 (152)
T 2lja_A 8 PSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPC-------RGELPALKELEEKYAGKDIHFVSLSCDK------N 74 (152)
T ss_dssp CCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGG-------GGTHHHHHHHHHHSTTSSEEEEEEECCS------C
T ss_pred CCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhH-------HHHhHHHHHHHHHhccCCeEEEEEEccC------c
Confidence 456 8899999999999999999999999999999866 9999999999999986 9999999886 5
Q ss_pred HHHHHHHHHhcCCCc-ceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccC
Q 004302 164 QTRLVEMLMKEYITF-PILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 164 ~~~v~~f~~k~~itf-PVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~ 232 (762)
.+.+.+|+++++++| +++.|....+.+.|++ | ++|||++|+++.+..|..+.++|++.|++++......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~~ 148 (152)
T 2lja_A 75 KKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGHH 148 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcccccc
Confidence 688999999999997 5666766667777754 4 6999999999999999999999999999988775443
No 66
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.80 E-value=2.3e-18 Score=190.22 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=135.2
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCC-CCCCCCcccccccCCcc-eEEEecCCCeEEEEeCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSC-PGFEDGEFESSKLMRPA-ASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG-~G~~DG~~~~a~fn~P~-GIavd~~~g~LYVADt~ 339 (762)
.+..|.++++++.+++||++|. +++|+++|.++ ......+.+ .+. .-..|. +|+++++++.|||+|+.
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~--------~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGS--------LGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSC--------CCCSSCCEEEEETTTTEEEEEETT
T ss_pred hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCC--------CCCCccccEEEeCCCCEEEEEeCC
Confidence 5789999999987899999986 88999999965 433333332 110 112377 99999878999999999
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEEC-CCCE
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINR-SFET 418 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~-gN~r 418 (762)
+|+|++++.++. +.+++|.+. ..|.. .| ....++|++|.||+++++|+|||||. +||+
T Consensus 288 ~~~I~~~~~~g~-~~~~~g~~~--~~g~~--------dg----------~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 288 LSSVYKITPDGE-CEWFCGSAT--QKTVQ--------DG----------LREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp TTEEEEECTTCC-EEEEEECTT--CCSCB--------CE----------EGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred CCEEEEEecCCC-EEEEEeCCC--CCCcC--------CC----------cccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 999999998655 788888641 11210 11 12346699999999999999999999 9999
Q ss_pred EEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC
Q 004302 419 LWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 498 (762)
Q Consensus 419 I~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N 498 (762)
|++|+..+|.+.++ +|.+.. .|. .++. ........|.+.+++.. +.|||||..|
T Consensus 347 I~~~~~~~G~v~~~-~g~~~~---~g~--------------------~~g~-~~~~~~~~P~giavd~~-g~lyVad~~n 400 (409)
T 3hrp_A 347 LRKLDILDGYVSTV-AGQVDV---ASQ--------------------IDGT-PLEATFNYPYDICYDGE-GGYWIAEAWG 400 (409)
T ss_dssp EEEEETTTTEEEEE-EECTTC---BSC--------------------CCBS-TTTCCBSSEEEEEECSS-SEEEEEESTT
T ss_pred EEEEECCCCEEEEE-eCCCCC---CCc--------------------CCCC-hhceEeCCceEEEEcCC-CCEEEEECCC
Confidence 99999778888776 444210 111 0110 11122233456666554 8999999999
Q ss_pred CEEEEEECC
Q 004302 499 QRIMRLNRE 507 (762)
Q Consensus 499 hRIrkidl~ 507 (762)
||||+|+++
T Consensus 401 ~~Ir~i~~e 409 (409)
T 3hrp_A 401 KAIRKYAVE 409 (409)
T ss_dssp CEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999864
No 67
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=99.80 E-value=4e-20 Score=181.80 Aligned_cols=124 Identities=12% Similarity=-0.023 Sum_probs=104.8
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~ 164 (762)
.|+|++.|.+|++++|++++||+|||+|| ++||++| ..|||.|++++++|++ ++||+|+.+ +.
T Consensus 31 aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C-------~~el~~l~~l~~~~~~~~~~vv~Vs~D-------~~ 96 (179)
T 3ixr_A 31 LLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGS-------STEGLEFNLLLPQFEQINATVLGVSRD-------SV 96 (179)
T ss_dssp HHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHH-------HHHHHHHHHHHHHHHTTTEEEEEEESC-------CH
T ss_pred CCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCch-------HHHHHHHHHHHHHHHHCCCEEEEEcCC-------CH
Confidence 56777888888899999999999999999 9999876 9999999999999975 999999976 47
Q ss_pred HHHHHHHHhcCCCcceeeCCCCccccccCc---------------e-EEEEcCCCCEEEEecCCcCHH---HHHHHHHHH
Q 004302 165 TRLVEMLMKEYITFPILLSNKNFPQMENGA---------------C-YLLSKDFGNARVFHENSLDIG---MLNKAVEEL 225 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---------------~-t~lId~~G~iv~~~~G~~~~~---~L~~~l~~l 225 (762)
+.+++|+++++++||++.|.+..+.++|++ | +||||++|+|+..+.+..... ++.+.|+++
T Consensus 97 ~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l 176 (179)
T 3ixr_A 97 KSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH 176 (179)
T ss_dssp HHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 889999999999999999988888888876 3 699999999999886544433 344444444
No 68
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=99.80 E-value=1.6e-19 Score=169.78 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=113.4
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
-+.|+|.+.+ +|+.++|++++||++||+||++||++| +.++|.|++++++|++ ++||+|+.+. +
T Consensus 7 ~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~v~v~~d~------~ 72 (152)
T 3gl3_A 7 DKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPC-------RQSFPWMNQMQAKYKAKGFQVVAVNLDA------K 72 (152)
T ss_dssp SBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHH-------HHHHHHHHHHHHHHGGGTEEEEEEECCS------S
T ss_pred CcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHH-------HHHHHHHHHHHHHhhcCCeEEEEEECCC------C
Confidence 3567888889 999999999999999999999999866 9999999999999986 9999999986 6
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcC--HHHHHHHHHHHHHhh
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLD--IGMLNKAVEELIMQQ 229 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~--~~~L~~~l~~ll~~~ 229 (762)
.+.+.+|+++++++||++.|....+...|++ | +||||++|+++.+..|... .++|++.|++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 73 TGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGN 144 (152)
T ss_dssp HHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence 8899999999999999999999888887765 4 4999999999999998654 467888887776553
No 69
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.80 E-value=3.3e-18 Score=185.07 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=162.2
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.+|++|+.++.||++|..+++|++++.+|.....+.. ..+..|.||++|+.+++||++|..+++
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-----------~~~~~p~glavd~~~g~ly~~d~~~~~ 139 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-----------TGLESPGGLAVDWVHDKLYWTDSGTSR 139 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------SSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-----------CCCCCccEEEEecCCCeEEEEcCCCCe
Confidence 477899999998899999999999999999998754333321 135679999999878999999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCC-CEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSF-ETLW 420 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN-~rI~ 420 (762)
|.++++++....++.. ..|..|.+|++|+ +|.||++|.++ ++|+
T Consensus 140 I~~~~~dG~~~~~l~~----------------------------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 140 IEVANLDGAHRKVLLW----------------------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEEETTSCSCEEEEC----------------------------------TTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred EEEEcCCCCceEEEEe----------------------------------CCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 9999987655444421 1266899999997 69999999999 9999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
++++++.....++ ..+ ...|.+.+++..++.||++|+.+++
T Consensus 186 r~~~dG~~~~~~~-~~~--------------------------------------~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 186 ASSMDGSGRRIIA-DTH--------------------------------------LFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp EEETTSCSCEESC-CSS--------------------------------------CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEeCCCCCcEEEE-ECC--------------------------------------CCCcceEEEeCCCCEEEEEECCCCE
Confidence 9998765443221 000 1123567777778999999999999
Q ss_pred EEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCcee--EEEEEecCCCccccccc
Q 004302 501 IMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID--IKVNVDIPSDTELVESL 578 (762)
Q Consensus 501 Irkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~--~~v~v~~p~~~~l~~p~ 578 (762)
|.++++++....++... .++.|..+...-+.+|.... ....+.+++...|... +...+.-|.|+.+..|.
T Consensus 227 I~~~~~dG~~~~~~~~~---~~~~P~giav~~~~ly~td~-----~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~ 298 (349)
T 3v64_C 227 IERANLDGSHRKAVISQ---GLPHPFAITVFEDSLYWTDW-----HTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ 298 (349)
T ss_dssp EEEEETTSCSCEEEECS---SCSSEEEEEEETTEEEEEET-----TTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGG
T ss_pred EEEEeCCCCceEEEEeC---CCCCceEEEEECCEEEEecC-----CCCeEEEEEccCCCccEEeccCCCCCceEEEEccc
Confidence 99999998766554322 25667666655455554332 2345666665566543 33334557888887764
No 70
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=99.80 E-value=1.3e-19 Score=185.28 Aligned_cols=130 Identities=8% Similarity=0.039 Sum_probs=112.7
Q ss_pred CCCCCceeeccc--CC--CccccCCC-CCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCC
Q 004302 85 EFQGPHHLWFNI--VE--DNIHFFKR-GGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGC 156 (762)
Q Consensus 85 ~l~g~~~~w~n~--~g--~~v~Lsd~-rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~ 156 (762)
.-+.|+|.+.+. +| ++++|+++ +||+|||+|| |+||++| +.|||.|.+++++|+ +++||+|+.+
T Consensus 28 G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C-------~~e~p~l~~l~~~~~~~~v~vv~Is~D- 99 (221)
T 2c0d_A 28 TKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVC-------PTEIIEFNKHIKDFENKNVELLGISVD- 99 (221)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCC-------HHHHHHHHHTHHHHHHTTEEEEEEESS-
T ss_pred CCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCch-------HHHHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence 345778888888 88 89999999 9999999999 9999866 999999999999995 4999999986
Q ss_pred CccCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCc--------e-EEEEcCCCCEEEEecCC----cCHH
Q 004302 157 STISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGA--------C-YLLSKDFGNARVFHENS----LDIG 216 (762)
Q Consensus 157 ~~~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv--------~-t~lId~~G~iv~~~~G~----~~~~ 216 (762)
+.+.+++|++++ +++||++.|.+..+.++|++ | +||||++|+|+....|. .+.+
T Consensus 100 ------~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ 173 (221)
T 2c0d_A 100 ------SVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQ 173 (221)
T ss_dssp ------CHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred ------CHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHH
Confidence 467899999998 88999999988888888887 3 59999999999998774 3567
Q ss_pred HHHHHHHHHHHh
Q 004302 217 MLNKAVEELIMQ 228 (762)
Q Consensus 217 ~L~~~l~~ll~~ 228 (762)
++.+.|+.|+..
T Consensus 174 ell~~l~~L~~~ 185 (221)
T 2c0d_A 174 EVLRTIDSIIHV 185 (221)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 888888888754
No 71
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=99.80 E-value=5e-20 Score=175.34 Aligned_cols=129 Identities=5% Similarity=-0.056 Sum_probs=110.9
Q ss_pred eecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCCHHHHHH
Q 004302 92 LWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVDQTRLVE 169 (762)
Q Consensus 92 ~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~~~~v~~ 169 (762)
.+.+.+|+.+++++++||++||+|||+||++| +.++|.|++++++|+ +++||+|+.+. ...+.+.+.+.+
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C-------~~~~~~l~~l~~~~~~~~~~vv~v~~~~-~~~~~~~~~~~~ 93 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLC-------LSELGQAEKWAQDAKFSSANLITVASPG-FLHEKKDGEFQK 93 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCTTCHHH-------HHHHHHHHHHHTCGGGTTSEEEEEECTT-STTCCCTTHHHH
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHcccCCcEEEEEEcCC-CccccCHHHHHH
Confidence 34556677999999999999999999999876 999999999999985 39999999875 344457788999
Q ss_pred HHHhcCCC-cceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 170 MLMKEYIT-FPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 170 f~~k~~it-fPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
|+++++++ ||++.|....+...|++ | +||||++|+++.++.|..+.++|++.|++++.+
T Consensus 94 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~ 157 (164)
T 2h30_A 94 WYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNAD 157 (164)
T ss_dssp HHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCC
T ss_pred HHHhCCCCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999998 89999988888888865 4 589999999999999999999999998877653
No 72
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=99.80 E-value=6.1e-20 Score=173.27 Aligned_cols=132 Identities=8% Similarity=-0.063 Sum_probs=114.1
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~ 166 (762)
+.|+|.+.+.+|+.+++++++ |++||+|||+||++| +.++|.|++++++| +++|++|+.+. .++.+.
T Consensus 10 ~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C-------~~~~~~l~~l~~~~-~v~~v~v~~d~----~~~~~~ 76 (154)
T 3ia1_A 10 PLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVC-------KAEFPGLHRVAEET-GVPFYVISREP----RDTREV 76 (154)
T ss_dssp ECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHH-------HHHHHHHHHHHHHH-CCCEEEEECCT----TCCHHH
T ss_pred cCCceEEECCCCCEechHHcC-CeEEEEEEcccChhH-------HHHHHHHHHHHHHc-CCeEEEEeCCC----cccHHH
Confidence 467788889999999999999 999999999999876 99999999999999 99999999842 137899
Q ss_pred HHHHHHhcCCCcceeeC---CCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhcc
Q 004302 167 LVEMLMKEYITFPILLS---NKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQE 231 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D---~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~ 231 (762)
+++|+++++++||++.| ....+...|++ | +||||++|+++....|..+.++|++.|++++.+...
T Consensus 77 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 77 VLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp HHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence 99999999999999998 44455666754 5 499999999999999999999999999988766443
No 73
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=99.79 E-value=1.9e-19 Score=171.48 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=101.6
Q ss_pred CCCCceeecccCCCccccCCCCCC-EEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCc
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGA-FLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISA 161 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK-~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e 161 (762)
-+.|+|.+.+.+|+.++|++++|| +|||+|| |+||++| +.++|.|.+++++|++ ++||+|+.+
T Consensus 13 ~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C-------~~~~~~l~~~~~~~~~~~~~vv~is~d------ 79 (160)
T 1xvw_A 13 ATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGIC-------QGELDQLRDHLPEFENDDSAALAISVG------ 79 (160)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHH-------HHHHHHHHHTGGGTSSSSEEEEEEESC------
T ss_pred CCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCch-------HHHHHHHHHHHHHHHHCCcEEEEEeCC------
Confidence 356788899999999999999998 9999998 9999876 9999999999999974 999999986
Q ss_pred CCHHHHHHHHHhcCCCcceeeCC--CCccccccCc-------e---EEEEcCCCCEEEEecCCcCH
Q 004302 162 VDQTRLVEMLMKEYITFPILLSN--KNFPQMENGA-------C---YLLSKDFGNARVFHENSLDI 215 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfPVl~D~--~~~~~~~ygv-------~---t~lId~~G~iv~~~~G~~~~ 215 (762)
+.+.+++|+++++++||++.|. +..+.+.|++ | +||||++|+++.++.|..+.
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~ 144 (160)
T 1xvw_A 80 -PPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGE 144 (160)
T ss_dssp -CHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTC
T ss_pred -CHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCC
Confidence 4678999999999999999995 6666666644 5 69999999999999887653
No 74
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=6.1e-18 Score=188.43 Aligned_cols=235 Identities=15% Similarity=0.063 Sum_probs=151.8
Q ss_pred CcccCCcceEEEcc-CCCEEEEEeCCCcEEEEEcCCCc-EEEEecCC----------CCC-------C------------
Q 004302 261 NLLLHFPGCISADE-SGNRLFLSDSNHHRIIVFDGNGK-ILDCIGSC----------PGF-------E------------ 309 (762)
Q Consensus 261 ~~~L~~P~gIAVD~-s~g~LYVADs~nhrI~v~d~~G~-i~~~iGsG----------~G~-------~------------ 309 (762)
.+.|.+|.+|++|| .+++|||+|.. |+|++||.++. +...+..+ .|. .
T Consensus 133 ~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 133 CGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred ccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 45799999999997 47999999998 99999999764 44333221 010 0
Q ss_pred -CCcc----cccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCC
Q 004302 310 -DGEF----ESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDND 384 (762)
Q Consensus 310 -DG~~----~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~ 384 (762)
+|.+ .-..+..|.+++++++++.|||+|.++++|++++++++.+..+...+.
T Consensus 212 ~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~----------------------- 268 (430)
T 3tc9_A 212 RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD----------------------- 268 (430)
T ss_dssp GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-----------------------
T ss_pred CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-----------------------
Confidence 1111 113578999999998789999999999999999998887765543320
Q ss_pred CccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEECCC--Cc---EEEEEcCCceeeEEeceehhhhhhhhccCC
Q 004302 385 TKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLAS--GE---IKEAVKGFSKVLEICGVLVMEKVFLLKQMP 458 (762)
Q Consensus 385 ~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d~~~--g~---I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p 458 (762)
..+|.+|+++++|+ |||+|..+|+|++++.++ +. +.++ +|.. |..+
T Consensus 269 ----------~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~-ag~~------g~~g----------- 320 (430)
T 3tc9_A 269 ----------SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIV-CGQQ------GAKD----------- 320 (430)
T ss_dssp ----------SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEE-EECT------TCBC-----------
T ss_pred ----------CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEE-eccC------CCCC-----------
Confidence 23799999999988 999999999999998764 22 2222 3321 1100
Q ss_pred ccccccccCCcccccCCCCcce-eeeEE-------ecCCEEEEEECCCCEEEEEECCCCcEEEEeecc--------cccc
Q 004302 459 QDWLLHQIDSSCSLKELPYAGL-ISSSI-------AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSN--------FAIL 522 (762)
Q Consensus 459 ~~~~~~~~d~~~~~~~~p~~~l-gsav~-------~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~--------~G~l 522 (762)
..++.. .......|. +.++. ..+++|||||+.||||++|+.+ |.++++...+ .|.+
T Consensus 321 ------~~dg~~-~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~ 392 (430)
T 3tc9_A 321 ------WVDGVG-KKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDL 392 (430)
T ss_dssp ------CBCEEG-GGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSSSSCBCEET
T ss_pred ------CCCCCC-cceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCCCcccCCCc
Confidence 001100 011222334 44443 2357999999999999999965 5777776542 2223
Q ss_pred CCCceeeccccceeec--cc-ccCCCccccceeeec
Q 004302 523 GLPYWFAFPLERVYAV--AG-GHQGSWTDHIQRCSL 555 (762)
Q Consensus 523 G~p~~~~~pl~~v~~~--~~-~~~g~~~~~~~~~~~ 555 (762)
.....|+.|....+.- +. .+.++.++++|++++
T Consensus 393 ~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 393 RQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred hhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 3334455565554443 11 234555666666653
No 75
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=99.79 E-value=3.1e-19 Score=177.40 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=115.5
Q ss_pred CCCCceeeccc--CCC---ccccCCC-CCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCC
Q 004302 86 FQGPHHLWFNI--VED---NIHFFKR-GGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGC 156 (762)
Q Consensus 86 l~g~~~~w~n~--~g~---~v~Lsd~-rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~ 156 (762)
-+.|+|.+.+. +|+ +++|+++ +||+|||+|| |+||+|| +.+||.|++++++|++ ++||+|+.+.
T Consensus 5 ~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C-------~~~~~~l~~l~~~~~~~~v~vv~Is~d~ 77 (198)
T 1zof_A 5 KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVC-------PTEIIAFDKRVKDFHEKGFNVIGVSIDS 77 (198)
T ss_dssp SBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSC-------CTHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred CcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCch-------HHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34678888898 898 9999999 9999999999 9999866 9999999999999964 9999999874
Q ss_pred CccCcCCHHHHHHHHHh-------cCCCcceeeCCCCccccccCce---------EEEEcCCCCEEEEecCCc----CHH
Q 004302 157 STISAVDQTRLVEMLMK-------EYITFPILLSNKNFPQMENGAC---------YLLSKDFGNARVFHENSL----DIG 216 (762)
Q Consensus 157 ~~~~e~~~~~v~~f~~k-------~~itfPVl~D~~~~~~~~ygv~---------t~lId~~G~iv~~~~G~~----~~~ 216 (762)
.+.+++|+++ ++++||++.|....+.+.|++. +||||++|+++..+.|.. +.+
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 150 (198)
T 1zof_A 78 -------EQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNAD 150 (198)
T ss_dssp -------HHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHH
T ss_pred -------HHHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHH
Confidence 6788999998 8999999999888777777763 599999999999998875 577
Q ss_pred HHHHHHHHHHHhhccCCCCCCCccchhhhhhhhcc
Q 004302 217 MLNKAVEELIMQQQENSSSPSGLKCTWAKQAEVLK 251 (762)
Q Consensus 217 ~L~~~l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~ 251 (762)
+|.+.|+++..... . ...-+..|..-.+++.
T Consensus 151 ~l~~~l~~l~~~~~-~---~~~~p~~w~~~~~~~~ 181 (198)
T 1zof_A 151 EMLRMVDALLHFEE-H---GEVCPAGWRKGDKGMK 181 (198)
T ss_dssp HHHHHHHHHHHHHS-S---CCCCC-----------
T ss_pred HHHHHHHHHHHhhc-c---CCccCCcCcCCCcccc
Confidence 88889988875432 1 2233466766555554
No 76
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=99.79 E-value=1.8e-19 Score=176.06 Aligned_cols=128 Identities=9% Similarity=-0.105 Sum_probs=104.3
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccC-CCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVD-NCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtW-C~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
-+.|+|.+.+.+|+.++|++++||++||+||++| |+ +| +.+||.|++++++ ++++||+|+.+. .
T Consensus 22 ~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~-----~C--~~~~~~l~~l~~~-~~v~vv~Is~D~-------~ 86 (175)
T 1xvq_A 22 SPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTP-----VC--ATSVRTFDERAAA-SGATVLCVSKDL-------P 86 (175)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSS-----CC--CHHHHHHHHHHHH-TTCEEEEEESSC-------H
T ss_pred CcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCc-----hH--HHHHHHHHHHHhh-cCCEEEEEECCC-------H
Confidence 3567888889999999999999999999999999 65 55 9999999999999 779999999864 6
Q ss_pred HHHHHHHHhcCC-CcceeeCCCCccccccCc------------e-EEEEcCCCCEEEEecC-C-cCHHHHHHHHHHHHHh
Q 004302 165 TRLVEMLMKEYI-TFPILLSNKNFPQMENGA------------C-YLLSKDFGNARVFHEN-S-LDIGMLNKAVEELIMQ 228 (762)
Q Consensus 165 ~~v~~f~~k~~i-tfPVl~D~~~~~~~~ygv------------~-t~lId~~G~iv~~~~G-~-~~~~~L~~~l~~ll~~ 228 (762)
+.+++|++++++ +||++.|.+..+.+.|++ | +||||++|+++..+.| . ....++++.|+.+.++
T Consensus 87 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~ 166 (175)
T 1xvq_A 87 FAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT 166 (175)
T ss_dssp HHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhh
Confidence 778999999999 899999988777777765 4 6999999999998874 3 3445788888877654
No 77
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.79 E-value=1.6e-17 Score=170.31 Aligned_cols=206 Identities=14% Similarity=0.030 Sum_probs=146.4
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
+..|.+|++|+.+++||++|..+++|.+++.+|.....+.. ..+..|.||+++++++.|||+|..+++|
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-----------~~~~~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-----------QDLGSPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-----------TTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-----------CCCCCccEEEEEecCCeEEEEECCCCEE
Confidence 56899999998889999999999999999998764333221 1357899999998789999999999999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECC--CCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRS--FETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~g--N~rI~ 420 (762)
.++++++....++... .+..|.+|++++ +|.|||+|.+ +++|+
T Consensus 104 ~~~~~~g~~~~~~~~~----------------------------------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDT----------------------------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp EEEETTSCSCEEEECS----------------------------------SCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred EEEEcCCCCEEEEEEC----------------------------------CCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence 9999875544443211 155799999998 5999999987 78999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+++.++.....+.. .+ ...+.+.+++..++.|||+|+.+++
T Consensus 150 ~~~~dg~~~~~~~~-~~--------------------------------------~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 150 TSHMDGTNRRILAQ-DN--------------------------------------LGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp EEETTSCCCEEEEC-TT--------------------------------------CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEecCCCCcEEEEE-CC--------------------------------------CCCCcEEEEcCCCCEEEEEECCCCE
Confidence 99987544332210 00 0123456776677899999999999
Q ss_pred EEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCceeE
Q 004302 501 IMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDI 562 (762)
Q Consensus 501 Irkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~ 562 (762)
|.+++++++....+. . .++.|..+...-+.+|.... ....+..++...|+..-
T Consensus 191 I~~~~~~g~~~~~~~-~---~~~~P~gi~~d~~~lyva~~-----~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 191 AECLNPAQPGRRKVL-E---GLQYPFAVTSYGKNLYYTDW-----KTNSVIAMDLAISKEMD 243 (267)
T ss_dssp EEEEETTEEEEEEEE-E---CCCSEEEEEEETTEEEEEET-----TTTEEEEEETTTTEEEE
T ss_pred EEEEecCCCceEEEe-c---CCCCceEEEEeCCEEEEEEC-----CCCeEEEEeCCCCCceE
Confidence 999999987655442 2 23456554433333443221 12457778877776643
No 78
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.79 E-value=4e-19 Score=167.43 Aligned_cols=129 Identities=8% Similarity=-0.029 Sum_probs=114.6
Q ss_pred CCCceeecccCC--------CccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCc
Q 004302 87 QGPHHLWFNIVE--------DNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCST 158 (762)
Q Consensus 87 ~g~~~~w~n~~g--------~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~ 158 (762)
+.|+|.+.+.+| +.+++++++||++||+||++||++| .+++|.|++++++ +++.|++|+.++
T Consensus 13 ~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C-------~~~~~~l~~l~~~-~~v~~v~v~~~~-- 82 (156)
T 1kng_A 13 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPC-------HDEAPLLTELGKD-KRFQLVGINYKD-- 82 (156)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHH-------HHHHHHHHHHTTC-TTSEEEEEEESC--
T ss_pred CCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhH-------HHHHHHHHHHHhc-CCeEEEEEECCC--
Confidence 466677777777 8999999999999999999999876 9999999999988 559999999886
Q ss_pred cCcCCHHHHHHHHHhcCCCcc-eeeCCCCccccccC---ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 159 ISAVDQTRLVEMLMKEYITFP-ILLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~~itfP-Vl~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
+.+.+++|+++++++|| ++.|....+...|+ +| +|+||++|+++..+.|..+.++|.+.|++++++.
T Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 83 ----AADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp ----CHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999 88888877777775 46 6999999999999999999999999999998764
No 79
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=99.79 E-value=2.4e-19 Score=179.25 Aligned_cols=132 Identities=12% Similarity=-0.022 Sum_probs=111.5
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCC-ccCCCCcchhhcHHHHHHHHHCC-----CeEEEEEEcCCCccCc
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCD-SLIAGCGTVVTFEKVKSIQQSFP-----QLQVIGFLHGCSTISA 161 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~p-C~~p~C~~~~emP~L~~L~~~y~-----~v~VvgV~~~~~~~~e 161 (762)
+|+|.+.|.+|+.++|++++||+|||+|||+||+| | ..+||.|.+++++|+ +++||+|+.+. ..
T Consensus 21 ~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC-------~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~---~~ 90 (200)
T 2b7k_A 21 GGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDIC-------PDELDKLGLWLNTLSSKYGITLQPLFITCDP---AR 90 (200)
T ss_dssp CCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHH-------HHHHHHHHHHHHHHHHHHCCCCEEEEEESCT---TT
T ss_pred CCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchh-------HHHHHHHHHHHHHHHHhhCCceEEEEEECCC---CC
Confidence 58899999999999999999999999999999986 6 999999999888774 49999999874 12
Q ss_pred CCHHHHHHHHHhcCCCcceeeCCC---CccccccCce--------------------EEEEcCCCCEEEEecCCcCHHHH
Q 004302 162 VDQTRLVEMLMKEYITFPILLSNK---NFPQMENGAC--------------------YLLSKDFGNARVFHENSLDIGML 218 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfPVl~D~~---~~~~~~ygv~--------------------t~lId~~G~iv~~~~G~~~~~~L 218 (762)
++.+.+++|+++++++|+.+.+.. ..+.++||+. +||||++|+++.++.|..+.+.+
T Consensus 91 d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~ 170 (200)
T 2b7k_A 91 DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTG 170 (200)
T ss_dssp CCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHH
T ss_pred CCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHH
Confidence 368899999999999999886532 2344455542 49999999999999999888899
Q ss_pred HHHHHHHHHhh
Q 004302 219 NKAVEELIMQQ 229 (762)
Q Consensus 219 ~~~l~~ll~~~ 229 (762)
.+.|.+++...
T Consensus 171 ~~~i~~~l~~l 181 (200)
T 2b7k_A 171 VDKIVEHVKSY 181 (200)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999988874
No 80
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.78 E-value=2.3e-18 Score=190.13 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=118.6
Q ss_pred Ccc-eEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEEEeC-CCC
Q 004302 266 FPG-CISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS-ENH 341 (762)
Q Consensus 266 ~P~-gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt-~Nh 341 (762)
.|. +|++++.+++|||+|..+|+|++++.+|++...+|.+ .|+.||.+..++|+.|.||++++ +++|||||+ +||
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~ 345 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGY 345 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTC
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCC
Confidence 377 9999987899999999999999999999988888873 67888888889999999999997 577999999 999
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
+|++|++.++.+.+++|.+. ..|. ..| .....+|++|+||+++++|+|||||.+||||++
T Consensus 346 ~I~~~~~~~G~v~~~~g~~~--~~g~--------~~g----------~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 346 CLRKLDILDGYVSTVAGQVD--VASQ--------IDG----------TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp EEEEEETTTTEEEEEEECTT--CBSC--------CCB----------STTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred EEEEEECCCCEEEEEeCCCC--CCCc--------CCC----------ChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 99999987899999998742 1121 011 123567999999999999999999999999999
Q ss_pred EEC
Q 004302 422 MDL 424 (762)
Q Consensus 422 ~d~ 424 (762)
+++
T Consensus 406 i~~ 408 (409)
T 3hrp_A 406 YAV 408 (409)
T ss_dssp EEE
T ss_pred EEe
Confidence 975
No 81
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=99.78 E-value=7.5e-20 Score=176.05 Aligned_cols=127 Identities=9% Similarity=-0.062 Sum_probs=107.3
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccC-CCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVD-NCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtW-C~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
-+.|+|.+.+.+|++++|++++||++||+||++| |++| +.++|.|++++++|++++||+|+.+. .
T Consensus 22 ~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C-------~~~~~~l~~l~~~~~~~~vv~is~d~-------~ 87 (167)
T 2jsy_A 22 DQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVC-------DAQTRRFNEEAAKLGDVNVYTISADL-------P 87 (167)
T ss_dssp SCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHH-------HHTHHHHHHHHHHHSSCEEEEEECSS-------G
T ss_pred CcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCch-------HHHHHHHHHHHHHcCCCEEEEEECCC-------H
Confidence 3467888889999999999999999999999999 7655 99999999999999669999999874 4
Q ss_pred HHHHHHHHhcCC-CcceeeC-CCCccccccCc---------e-EEEEcCCCCEEEEecCCc-----CHHHHHHHHHHHH
Q 004302 165 TRLVEMLMKEYI-TFPILLS-NKNFPQMENGA---------C-YLLSKDFGNARVFHENSL-----DIGMLNKAVEELI 226 (762)
Q Consensus 165 ~~v~~f~~k~~i-tfPVl~D-~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~-----~~~~L~~~l~~ll 226 (762)
+.+++|++++++ +||++.| .+..+.+.|++ | +||||++|+++.++.|.. +.+++.+.|++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 88 FAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp GGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 568889999999 9999999 77666677754 5 699999999999987632 3467777887775
No 82
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1e-20 Score=180.12 Aligned_cols=132 Identities=10% Similarity=0.021 Sum_probs=112.3
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHH-HHHHCC-C--eEEEEEEcCCCccCcC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKS-IQQSFP-Q--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~-L~~~y~-~--v~VvgV~~~~~~~~e~ 162 (762)
+.|+|.+.+.+|+.+++++++||+|||+|||+||++| +.++|.|++ ++++|+ + ++||+|+.++
T Consensus 12 ~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C-------~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~------ 78 (159)
T 2ls5_A 12 MAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVC-------RKEMPFIEKDIWLKHKDNADFALIGIDRDE------ 78 (159)
Confidence 4567778888888999999999999999999999866 999999998 999987 3 9999999876
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccC-----ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccC
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENG-----AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~yg-----v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~ 232 (762)
+.+.+++|+++++++||++.|.+..+.+.|+ +| +||||++|+++.+..| .+.+++++.|+++......+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~~~~~~ 153 (159)
T 2ls5_A 79 PLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQINEMLKEG 153 (159)
Confidence 5567899999999999999999988888887 45 5899999999998888 45567888887776654433
No 83
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=99.78 E-value=3e-19 Score=179.40 Aligned_cols=127 Identities=9% Similarity=-0.062 Sum_probs=106.4
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~ 163 (762)
.-+.|+|.+.|.+|+.++|++++||+|||+|| ++||++| ..|||.|++++++|++++||+|+.+ +
T Consensus 55 G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C-------~~e~~~l~~l~~~~~~v~vv~Is~D-------~ 120 (200)
T 3zrd_A 55 GDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVC-------AASVRKFNQLAGELENTVVLCISSD-------L 120 (200)
T ss_dssp TCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCC-------CHHHHHHHHHHHTSTTEEEEEEESS-------C
T ss_pred CCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchh-------HHHHHHHHHHHHHhCCCEEEEEECC-------C
Confidence 34677889999999999999999999999999 6799865 9999999999999966999999976 4
Q ss_pred HHHHHHHHHhcCC-CcceeeCC-CCccccccCc------------e-EEEEcCCCCEEEEecCC--cCHHHHHHHHHHH
Q 004302 164 QTRLVEMLMKEYI-TFPILLSN-KNFPQMENGA------------C-YLLSKDFGNARVFHENS--LDIGMLNKAVEEL 225 (762)
Q Consensus 164 ~~~v~~f~~k~~i-tfPVl~D~-~~~~~~~ygv------------~-t~lId~~G~iv~~~~G~--~~~~~L~~~l~~l 225 (762)
.+.+++|++++++ +||++.|. +..+.++||+ | +||||++|+|+..+.+. ....+++++|+.|
T Consensus 121 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 121 PFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp HHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhh
Confidence 7789999999999 99999998 7777777764 4 59999999999987654 2233466655543
No 84
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=99.78 E-value=2.7e-19 Score=172.95 Aligned_cols=111 Identities=7% Similarity=-0.118 Sum_probs=98.2
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
-+.|+|.+.|.+|++++|++++||+|||+|| ++||++| ..|||.|++++++ .+++||+|+.+ +.
T Consensus 24 ~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C-------~~~~~~l~~~~~~-~~~~vv~is~d-------~~ 88 (166)
T 3p7x_A 24 DFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVC-------DQQTRKFNSDASK-EEGIVLTISAD-------LP 88 (166)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHH-------HHHHHHHHHHSCT-TTSEEEEEESS-------CH
T ss_pred CCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCcc-------HHHHHHHHHHhhc-CCCEEEEEECC-------CH
Confidence 4578889999999999999999999999999 7899866 9999999999988 67999999976 47
Q ss_pred HHHHHHHHhcCC-CcceeeCC-CCccccccCc---------e-EEEEcCCCCEEEEecC
Q 004302 165 TRLVEMLMKEYI-TFPILLSN-KNFPQMENGA---------C-YLLSKDFGNARVFHEN 211 (762)
Q Consensus 165 ~~v~~f~~k~~i-tfPVl~D~-~~~~~~~ygv---------~-t~lId~~G~iv~~~~G 211 (762)
+.+++|++++++ +||++.|. +..+.++|++ | +||||++|+|+..+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~ 147 (166)
T 3p7x_A 89 FAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIV 147 (166)
T ss_dssp HHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEc
Confidence 889999999999 89999998 7777777764 4 5999999999998654
No 85
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.78 E-value=5.8e-19 Score=175.21 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=109.1
Q ss_pred CCCceeecccC-------------C--CccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eE
Q 004302 87 QGPHHLWFNIV-------------E--DNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQ 148 (762)
Q Consensus 87 ~g~~~~w~n~~-------------g--~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~ 148 (762)
+.|+|.+.+.+ | ++++|++++||+|||+|| |+||++| +.++|.|.+++++|++ ++
T Consensus 9 ~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C-------~~~~~~l~~l~~~~~~~~v~ 81 (195)
T 2bmx_A 9 QFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVC-------PTEIAAFSKLNDEFEDRDAQ 81 (195)
T ss_dssp BCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCC-------HHHHHHHHHTHHHHHTTTEE
T ss_pred cCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCc-------HHHHHHHHHHHHHHHHCCCE
Confidence 45666776666 6 799999999999999999 9999866 9999999999999974 99
Q ss_pred EEEEEcCCCccCcCCHHHHHHHHHhc----CCCcceeeCCCCccccccCc--------e-EEEEcCCCCEEEEecCCc--
Q 004302 149 VIGFLHGCSTISAVDQTRLVEMLMKE----YITFPILLSNKNFPQMENGA--------C-YLLSKDFGNARVFHENSL-- 213 (762)
Q Consensus 149 VvgV~~~~~~~~e~~~~~v~~f~~k~----~itfPVl~D~~~~~~~~ygv--------~-t~lId~~G~iv~~~~G~~-- 213 (762)
||+|+.+. .+.+++|++++ +++||++.|.+..+.+.|++ | +||||++|+++.++.|..
T Consensus 82 vv~Vs~d~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~ 154 (195)
T 2bmx_A 82 ILGVSIDS-------EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSV 154 (195)
T ss_dssp EEEEESSC-------HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTC
T ss_pred EEEEECCC-------HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCCC
Confidence 99999864 67899999998 99999999988777776654 4 599999999999988875
Q ss_pred --CHHHHHHHHHHHHH
Q 004302 214 --DIGMLNKAVEELIM 227 (762)
Q Consensus 214 --~~~~L~~~l~~ll~ 227 (762)
+.++|.+.|++++.
T Consensus 155 ~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 155 GRNVDEVLRVLDALQS 170 (195)
T ss_dssp CCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhh
Confidence 67888888888876
No 86
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=179.76 Aligned_cols=129 Identities=13% Similarity=0.092 Sum_probs=109.1
Q ss_pred CCCCceeeccc---CCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 86 FQGPHHLWFNI---VEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 86 l~g~~~~w~n~---~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
-+.|+|.+.+. +|+.++|++++||+|||+|| |+||++| ..|||.|.+++++|++ ++||+|+.+
T Consensus 23 ~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C-------~~e~~~l~~l~~~~~~~~v~vv~Is~D---- 91 (211)
T 2pn8_A 23 MPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVC-------PTEIIAFGDRLEEFRSINTEVVACSVD---- 91 (211)
T ss_dssp CBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHH-------HHHHHHHHHTHHHHHTTTEEEEEEESS----
T ss_pred CcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECC----
Confidence 35667777653 56899999999999999999 9999876 9999999999999954 999999986
Q ss_pred CcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCc----CHHHH
Q 004302 160 SAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSL----DIGML 218 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~----~~~~L 218 (762)
+.+.+++|++++ +++||++.|.+..+.++|++ | +||||++|+|+....|.. +.+++
T Consensus 92 ---~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~el 168 (211)
T 2pn8_A 92 ---SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET 168 (211)
T ss_dssp ---CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ---CHHHHHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 467889999988 89999999988888888876 3 599999999999887653 56778
Q ss_pred HHHHHHHHHh
Q 004302 219 NKAVEELIMQ 228 (762)
Q Consensus 219 ~~~l~~ll~~ 228 (762)
.+.|+.|+..
T Consensus 169 l~~l~~l~~~ 178 (211)
T 2pn8_A 169 LRLVQAFQYT 178 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8888887654
No 87
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=99.77 E-value=6.2e-19 Score=176.15 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=119.9
Q ss_pred CCCCceeeccc--CC--CccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCc
Q 004302 86 FQGPHHLWFNI--VE--DNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCST 158 (762)
Q Consensus 86 l~g~~~~w~n~--~g--~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~ 158 (762)
-+.|+|.+.+. +| +.++|++++||+|||+|| ++||++| ..++|.|.+++++|+ +++||+|+.+.
T Consensus 10 ~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C-------~~~~~~l~~l~~~~~~~~v~vi~Is~D~-- 80 (202)
T 1uul_A 10 HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVC-------PTEICQFSDRVKEFSDIGCEVLACSMDS-- 80 (202)
T ss_dssp SBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHH-------HHHHHHHHHTHHHHHTTTEEEEEEESSC--
T ss_pred CcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcC-------HHHHHHHHHHHHHHHHCCCEEEEEeCCC--
Confidence 35677888777 67 799999999999999999 9999876 999999999999995 49999999864
Q ss_pred cCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCcC----HHH
Q 004302 159 ISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSLD----IGM 217 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~~----~~~ 217 (762)
.+.+++|++++ +++||++.|.+..+.+.|++. +||||++|+++.++.|... .++
T Consensus 81 -----~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e 155 (202)
T 1uul_A 81 -----EYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDE 155 (202)
T ss_dssp -----HHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred -----HHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHH
Confidence 67899999998 899999999887777777654 5999999999999877654 578
Q ss_pred HHHHHHHHHHhhccCCCCCCCccchhhhhhhhccC
Q 004302 218 LNKAVEELIMQQQENSSSPSGLKCTWAKQAEVLKE 252 (762)
Q Consensus 218 L~~~l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~~ 252 (762)
|.+.|++++.... . ...-+..|.+-.++++.
T Consensus 156 ll~~l~~l~~~~~-~---~~~~p~~w~~g~~~~~~ 186 (202)
T 1uul_A 156 ALRLVKAFQFVEK-H---GEVCPANWKPGDKTMKP 186 (202)
T ss_dssp HHHHHHHHHHHHH-H---SCBBCTTCCTTSCCBCS
T ss_pred HHHHHHHhhhhhh-c---CCccCCCcCCCCceecc
Confidence 8888888875321 1 12233457666666654
No 88
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.77 E-value=1.5e-17 Score=198.65 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=135.2
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-C
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN-H 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N-h 341 (762)
.|..|.|||||..+++||++|.++++|.+++.+|+....+.. ..+..|.|||+|+.++.||++|+++ +
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-----------~~l~~P~gIaVDp~~g~LYwtD~g~~~ 537 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------ENGSKPRAIVVDPVHGFMYWTDWGTPA 537 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----------CTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-----------CCCCCcceEEEecCCCCEEEecCCCCC
Confidence 588999999998888999999999999999999977665543 2467899999999889999999987 8
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~ 420 (762)
+|.++++++....++... .|.+|.||++|+ ++.||+||.++++|+
T Consensus 538 ~I~~~~~dG~~~~~lv~~----------------------------------~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVTE----------------------------------NIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp EEEEEETTSCCEEEEECS----------------------------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEecCCCceEEEEeC----------------------------------CCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 999999987776666321 266899999994 699999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
++++++....+++.+.+ ..+ .+.+++.++++||++|..+++
T Consensus 584 ~~d~dG~~~~~v~~~~~------------------------------------~l~---~P~glav~~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 584 SIDVNGGNRKTILEDEK------------------------------------RLA---HPFSLAVFEDKVFWTDIINEA 624 (791)
T ss_dssp EEETTSCSCEEEEECTT------------------------------------TTS---SEEEEEEETTEEEEEETTTTE
T ss_pred EEecCCCceEEEecCCC------------------------------------ccC---CCCEEEEeCCEEEEEECCCCE
Confidence 99998876665532211 011 125566678899999999999
Q ss_pred EEEEECCCC-cEEEE
Q 004302 501 IMRLNRESG-VCSNF 514 (762)
Q Consensus 501 Irkidl~~~-~~sti 514 (762)
|++++..+| .+.++
T Consensus 625 I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 625 IFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEETTTCCCCEEE
T ss_pred EEEEeCCCCcceEEe
Confidence 999997655 44454
No 89
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.77 E-value=2.3e-17 Score=176.88 Aligned_cols=223 Identities=14% Similarity=0.060 Sum_probs=163.9
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcE--EEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKI--LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i--~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.+..|.+|+.|+.++.||++|..+++|++++.+|.. ...+. ..+..|.|||+|+.+++||++|..+
T Consensus 33 ~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~------------~~l~~p~glavd~~~g~ly~~d~~~ 100 (318)
T 3sov_A 33 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------------SGLLSPDGLACDWLGEKLYWTDSET 100 (318)
T ss_dssp EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE------------ECCSCCCEEEEETTTTEEEEEETTT
T ss_pred CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc------------CCCCCccEEEEEcCCCeEEEEECCC
Confidence 467889999998889999999999999999997752 12221 2367799999998789999999999
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECC-CCE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRS-FET 418 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~g-N~r 418 (762)
++|.++++++....++.. ..+..|.||++++ +|.||++|.+ +++
T Consensus 101 ~~I~~~~~dG~~~~~l~~----------------------------------~~~~~P~giavdp~~g~ly~td~~~~~~ 146 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFW----------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPK 146 (318)
T ss_dssp TEEEEEETTSCSCEEEEC----------------------------------SSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred CEEEEEECCCCcEEEEEe----------------------------------CCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence 999999987665555421 1256899999997 5999999986 899
Q ss_pred EEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC
Q 004302 419 LWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 498 (762)
Q Consensus 419 I~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N 498 (762)
|+++++++.....++. .+ ...|.+.+++..++.||++|+.+
T Consensus 147 I~r~~~dG~~~~~~~~-~~--------------------------------------l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 147 IERAGMDGSSRFIIIN-SE--------------------------------------IYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EEEEETTSCSCEEEEC-SS--------------------------------------CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEEcCCCCeEEEEE-CC--------------------------------------CCCccEEEEeccCCEEEEEECCC
Confidence 9999998655444321 00 11234677777789999999999
Q ss_pred CEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCcee--EEEEEecCCCccccc
Q 004302 499 QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID--IKVNVDIPSDTELVE 576 (762)
Q Consensus 499 hRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~--~~v~v~~p~~~~l~~ 576 (762)
++|.++++++....++. .+.++.|..+..--+.+|.... ....+.+++...|+.. +.+.+.-|.|+.++.
T Consensus 188 ~~I~~~d~dG~~~~~~~---~~~~~~P~glav~~~~lywtd~-----~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~ 259 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVV---KGSLPHPFALTLFEDILYWTDW-----STHSILACNKYTGEGLREIHSDIFSPMDIHAFS 259 (318)
T ss_dssp TEEEEEETTSCSCEEEE---CSCCSCEEEEEEETTEEEEEET-----TTTEEEEEETTTCCSCEEEECCCSSCCCEEEEC
T ss_pred CEEEEEcCCCCceEEEe---cCCCCCceEEEEeCCEEEEEec-----CCCeEEEEECCCCCceEEEeCCCCCCcEEEEec
Confidence 99999999987766654 1346677666655555664432 2356777777667653 333445688888877
Q ss_pred cc
Q 004302 577 SL 578 (762)
Q Consensus 577 p~ 578 (762)
|.
T Consensus 260 ~~ 261 (318)
T 3sov_A 260 QQ 261 (318)
T ss_dssp GG
T ss_pred cc
Confidence 74
No 90
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=99.77 E-value=8.9e-19 Score=168.18 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=113.9
Q ss_pred CCCCCceeeccc--CCCccccCCC-CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCc
Q 004302 85 EFQGPHHLWFNI--VEDNIHFFKR-GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISA 161 (762)
Q Consensus 85 ~l~g~~~~w~n~--~g~~v~Lsd~-rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e 161 (762)
.-+.|+|.+.+. +|+.+++.++ +||++||+|||+||++| ++++|.|++++++ +++|++|+.++
T Consensus 25 G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C-------~~~~~~l~~l~~~--~v~vv~v~~~~----- 90 (168)
T 2b1k_A 25 GKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTC-------RAEHQYLNQLSAQ--GIRVVGMNYKD----- 90 (168)
T ss_dssp TSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHH-------HHHHHHHHHHHHT--TCCEEEEEESC-----
T ss_pred CCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHC--CCEEEEEECCC-----
Confidence 345778888888 8999999884 99999999999999876 9999999999987 79999999886
Q ss_pred CCHHHHHHHHHhcCCCcc-eeeCCCCccccccC---ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 162 VDQTRLVEMLMKEYITFP-ILLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfP-Vl~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
+.+.+++|+++++++|| ++.|....+...|+ +| +|+||++|+++.++.|..+.+++.+.|++++.+.
T Consensus 91 -~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 162 (168)
T 2b1k_A 91 -DRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKY 162 (168)
T ss_dssp -CHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHH
T ss_pred -ChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999 56777776777765 56 7999999999999999999999999999888764
No 91
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.77 E-value=1.8e-17 Score=179.31 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=129.8
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-C
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN-H 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N-h 341 (762)
.+..|.|||+|+.+++||++|..+++|.+++.+|+....+.. ..+..|.||++||.++.||++|+++ +
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-----------~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-----------QSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------TTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-----------CCCCCcceEEEecCcCeEEEeccCCCC
Confidence 478899999998899999999999999999999876554432 2467899999998899999999998 9
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~ 420 (762)
+|.++++++....++.. ..+..|.||++|+ ++.||++|+++++|+
T Consensus 183 ~I~r~~~dG~~~~~~~~----------------------------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~ 228 (349)
T 3v64_C 183 RIEASSMDGSGRRIIAD----------------------------------THLFWPNGLTIDYAGRRMYWVDAKHHVIE 228 (349)
T ss_dssp EEEEEETTSCSCEESCC----------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcEEEEE----------------------------------CCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence 99999987544333321 1266899999996 689999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+++.++....+++.. + ...| .++++ +++.||++|..+++
T Consensus 229 ~~~~dG~~~~~~~~~-~-----------------------------------~~~P---~giav--~~~~ly~td~~~~~ 267 (349)
T 3v64_C 229 RANLDGSHRKAVISQ-G-----------------------------------LPHP---FAITV--FEDSLYWTDWHTKS 267 (349)
T ss_dssp EEETTSCSCEEEECS-S-----------------------------------CSSE---EEEEE--ETTEEEEEETTTTE
T ss_pred EEeCCCCceEEEEeC-C-----------------------------------CCCc---eEEEE--ECCEEEEecCCCCe
Confidence 999987554443211 0 0123 33444 68899999999999
Q ss_pred EEEEEC-CCCcEEEEe
Q 004302 501 IMRLNR-ESGVCSNFQ 515 (762)
Q Consensus 501 Irkidl-~~~~~sti~ 515 (762)
|.+++. ++....++.
T Consensus 268 V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 268 INSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTCCSCEEEE
T ss_pred EEEEEccCCCccEEec
Confidence 999994 555555553
No 92
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.77 E-value=1.9e-17 Score=182.70 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=132.4
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-CC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE-NH 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~-Nh 341 (762)
.+..|.|||||..+++||++|..+++|.+++.+|.....+.. ..+..|.||++||.++.||++|++ ++
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-----------~~~~~P~~iavdp~~g~ly~td~~~~~ 225 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------ENGSKPRAIVVDPVHGFMYWTDWGTPA 225 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-----------CSSCCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-----------CCCCCcceEEEecccCeEEEEeCCCCC
Confidence 578999999998799999999999999999999876655432 246789999999989999999987 58
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~ 420 (762)
+|.++++++....++.. ..|.+|.||++|+ ++.||++|+++++|+
T Consensus 226 ~I~~~~~dG~~~~~~~~----------------------------------~~l~~P~glavd~~~~~lY~aD~~~~~I~ 271 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVT----------------------------------ENIQWPNGITLDLLSGRLYWVDSKLHSIS 271 (400)
T ss_dssp CEEEEETTSCSCEEEEC----------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCccEEEEE----------------------------------CCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence 99999987665555421 1266899999995 589999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
++|.+++...++..+.+ . ...| .+++.+++.||++|..+++
T Consensus 272 ~~d~dG~~~~~~~~~~~-------~---------------------------l~~P-----~gl~v~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 272 SIDVNGGNRKTILEDEK-------R---------------------------LAHP-----FSLAVFEDKVFWTDIINEA 312 (400)
T ss_dssp EEETTSCCCEEEEECSS-------T---------------------------TSSE-----EEEEEETTEEEEEESSSCS
T ss_pred EEeCCCCccEEEEeCCC-------C---------------------------CCCC-----EEEEEeCCEEEEecCCCCe
Confidence 99998776655532111 0 0122 4555678899999999999
Q ss_pred EEEEECC-CCcEEEEe
Q 004302 501 IMRLNRE-SGVCSNFQ 515 (762)
Q Consensus 501 Irkidl~-~~~~sti~ 515 (762)
|++++.. +..+.++.
T Consensus 313 V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEESSSCCCCEEEE
T ss_pred EEEEEcCCCCceEEEe
Confidence 9999954 44555553
No 93
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=99.77 E-value=9.6e-19 Score=173.90 Aligned_cols=148 Identities=13% Similarity=0.145 Sum_probs=119.1
Q ss_pred CCCCceeeccc-CC--CccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 86 FQGPHHLWFNI-VE--DNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 86 l~g~~~~w~n~-~g--~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
-+.|+|.+.+. +| +.++|++++||+|||+|| |+||++| ..+||.|.+++++|++ ++||+|+.+.
T Consensus 9 ~~aP~f~l~~~~~g~~~~v~l~~~~gk~vvl~F~~a~~C~~C-------~~~~~~l~~l~~~~~~~~v~vv~Is~d~--- 78 (197)
T 1qmv_A 9 KPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVA-------PTEIIAFSNRAEDFRKLGCEVLGVSVDS--- 78 (197)
T ss_dssp SBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHH-------HHHHHHHHHTHHHHHTTTEEEEEEESSC---
T ss_pred CCCCCeEeEeecCCCccEEEHHHHCCCeEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCC---
Confidence 35677888877 77 899999999999999999 9999876 9999999999999964 9999999874
Q ss_pred CcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCc----CHHHH
Q 004302 160 SAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSL----DIGML 218 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~----~~~~L 218 (762)
.+.+.+|++++ +++||++.|....+.++|++. +||||++|+++..+.|.. +.+++
T Consensus 79 ----~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~ 154 (197)
T 1qmv_A 79 ----QFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEA 154 (197)
T ss_dssp ----HHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ----HHHHHHHHHHHHhhCCCCCCceEEEECCcHHHHHHcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHH
Confidence 56788899887 899999999888777777754 699999999999988854 45778
Q ss_pred HHHHHHHHHhhccCCCCCCCccchhhhhhhhcc
Q 004302 219 NKAVEELIMQQQENSSSPSGLKCTWAKQAEVLK 251 (762)
Q Consensus 219 ~~~l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~ 251 (762)
.+.|+.+.... . ....-+..|..-.+++.
T Consensus 155 l~~l~~l~~~~-~---~~~~cp~~w~~g~~~~~ 183 (197)
T 1qmv_A 155 LRLVQAFQYTD-E---HGEVCPAGWKPGSDTIK 183 (197)
T ss_dssp HHHHHHHHHHH-H---HCCBBCTTCCTTSCCBC
T ss_pred HHHHHhcchhh-c---cCCccCCCcCcCCcccc
Confidence 88888776542 1 13444555665555554
No 94
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.77 E-value=2.3e-17 Score=176.83 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=130.5
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-CC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE-NH 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~-Nh 341 (762)
.|..|.|||+|+.+++||++|..+++|.+++.+|.....+.. ..+..|.||++|+.++.||++|.+ ++
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~ 145 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVP 145 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSC
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCC
Confidence 578899999998899999999999999999999876555532 246789999999888999999976 79
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~ 420 (762)
+|.++++++....++... .|..|.||++|+ ++.||++|+.+++|+
T Consensus 146 ~I~r~~~dG~~~~~~~~~----------------------------------~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 146 KIERAGMDGSSRFIIINS----------------------------------EIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp EEEEEETTSCSCEEEECS----------------------------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEEcCCCCeEEEEEC----------------------------------CCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 999999876554444211 266899999997 689999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+++.++....+++.+. ...| .+++.+++.||++|..+++
T Consensus 192 ~~d~dG~~~~~~~~~~------------------------------------~~~P-----~glav~~~~lywtd~~~~~ 230 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGS------------------------------------LPHP-----FALTLFEDILYWTDWSTHS 230 (318)
T ss_dssp EEETTSCSCEEEECSC------------------------------------CSCE-----EEEEEETTEEEEEETTTTE
T ss_pred EEcCCCCceEEEecCC------------------------------------CCCc-----eEEEEeCCEEEEEecCCCe
Confidence 9999876555443110 0123 3444468899999999999
Q ss_pred EEEEECCCC-cEEEE
Q 004302 501 IMRLNRESG-VCSNF 514 (762)
Q Consensus 501 Irkidl~~~-~~sti 514 (762)
|.+++..+| ...++
T Consensus 231 V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 231 ILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEETTTCCSCEEE
T ss_pred EEEEECCCCCceEEE
Confidence 999999554 44444
No 95
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=99.77 E-value=1.3e-18 Score=172.01 Aligned_cols=128 Identities=10% Similarity=0.095 Sum_probs=110.7
Q ss_pred CCCceeeccc--CC--CccccCCC-CCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCc
Q 004302 87 QGPHHLWFNI--VE--DNIHFFKR-GGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCST 158 (762)
Q Consensus 87 ~g~~~~w~n~--~g--~~v~Lsd~-rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~ 158 (762)
+.|+|.+.+. +| +.++|+++ +||+|||+|| |+||++| ..+||.|.+++++|+ +++||+|+.+.
T Consensus 5 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C-------~~~~~~l~~~~~~~~~~~v~vv~Is~d~-- 75 (192)
T 2h01_A 5 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVC-------PSEIIALDKALDSFKERNVELLGCSVDS-- 75 (192)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSC-------CHHHHHHHHTHHHHHHTTEEEEEEESSC--
T ss_pred cCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEEeCC--
Confidence 4677888888 88 89999999 9999999999 9999866 999999999999995 59999999864
Q ss_pred cCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce---------EEEEcCCCCEEEEecCCc----CHHHH
Q 004302 159 ISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC---------YLLSKDFGNARVFHENSL----DIGML 218 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~---------t~lId~~G~iv~~~~G~~----~~~~L 218 (762)
.+.+++|++++ +++||++.|....+.++|++. +||||++|+++..+.|.. +.+++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l 150 (192)
T 2h01_A 76 -----KFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEI 150 (192)
T ss_dssp -----HHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHH
T ss_pred -----HHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHH
Confidence 67899999988 899999999887777878764 599999999999988754 36778
Q ss_pred HHHHHHHHHh
Q 004302 219 NKAVEELIMQ 228 (762)
Q Consensus 219 ~~~l~~ll~~ 228 (762)
.+.|+.++..
T Consensus 151 ~~~l~~l~~~ 160 (192)
T 2h01_A 151 LRLIDALQHH 160 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888887753
No 96
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.76 E-value=1.8e-17 Score=181.71 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=130.7
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-C
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN-H 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N-h 341 (762)
.+..|.|||+|+.+++||++|.++++|.+++.+|.....+.. ..+..|.||++||.++.||++|+++ +
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-----------~~l~~P~giavdp~~g~ly~td~~~~~ 225 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-----------QSLEKPRAIALHPMEGTIYWTDWGNTP 225 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-----------SSCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-----------CCCCCCcEEEEEcCCCeEEEeccCCCC
Confidence 478899999998899999999999999999999876544432 2467899999998899999999998 9
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~ 420 (762)
+|.++++++....++... .+.+|.||++|+ ++.||++|+++++|+
T Consensus 226 ~I~r~~~dG~~~~~~~~~----------------------------------~~~~PnGlavd~~~~~lY~aD~~~~~I~ 271 (386)
T 3v65_B 226 RIEASSMDGSGRRIIADT----------------------------------HLFWPNGLTIDYAGRRMYWVDAKHHVIE 271 (386)
T ss_dssp EEEEEETTSCSCEEEECS----------------------------------SCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcEEEEEC----------------------------------CCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence 999999876655555321 166899999995 699999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+++.++....+++. .+ ...| .+++.+++.||++|..+++
T Consensus 272 ~~d~dG~~~~~~~~-~~-----------------------------------~~~P-----~giav~~~~ly~td~~~~~ 310 (386)
T 3v65_B 272 RANLDGSHRKAVIS-QG-----------------------------------LPHP-----FAITVFEDSLYWTDWHTKS 310 (386)
T ss_dssp EECTTSCSCEEEEC-SS-----------------------------------CSSE-----EEEEEETTEEEEEETTTTE
T ss_pred EEeCCCCeeEEEEE-CC-----------------------------------CCCc-----eEEEEECCEEEEeeCCCCe
Confidence 99997655444321 00 0123 3344468899999999999
Q ss_pred EEEEE-CCCCcEEEEe
Q 004302 501 IMRLN-RESGVCSNFQ 515 (762)
Q Consensus 501 Irkid-l~~~~~sti~ 515 (762)
|.+++ .++..+.++.
T Consensus 311 V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 311 INSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEETTTCCSCEEEE
T ss_pred EEEEECCCCcceEEEc
Confidence 99999 4555655553
No 97
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=99.76 E-value=1.3e-18 Score=176.27 Aligned_cols=130 Identities=8% Similarity=0.081 Sum_probs=113.1
Q ss_pred CCCCCceeeccc--CC--CccccCCC-CCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCC
Q 004302 85 EFQGPHHLWFNI--VE--DNIHFFKR-GGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGC 156 (762)
Q Consensus 85 ~l~g~~~~w~n~--~g--~~v~Lsd~-rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~ 156 (762)
.-+.|+|.+.+. +| +.++|+++ +||+|||+|| |+||++| ..++|.|.+++++|+ +++||+|+.+.
T Consensus 24 G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C-------~~~~~~l~~l~~~~~~~~v~vv~Is~D~ 96 (213)
T 2i81_A 24 GKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVC-------PSEIIALDKALDAFHERNVELLGCSVDS 96 (213)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHH-------HHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred CCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345788888888 88 89999999 9999999999 9999876 999999999999995 49999999864
Q ss_pred CccCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce---------EEEEcCCCCEEEEecCCcC----HH
Q 004302 157 STISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC---------YLLSKDFGNARVFHENSLD----IG 216 (762)
Q Consensus 157 ~~~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~---------t~lId~~G~iv~~~~G~~~----~~ 216 (762)
.+.+++|++++ +++||++.|....+.++|++. +||||++|+++....|... .+
T Consensus 97 -------~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ 169 (213)
T 2i81_A 97 -------KYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVD 169 (213)
T ss_dssp -------HHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred -------HHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 67889999988 899999999888888888764 6999999999999877543 78
Q ss_pred HHHHHHHHHHHh
Q 004302 217 MLNKAVEELIMQ 228 (762)
Q Consensus 217 ~L~~~l~~ll~~ 228 (762)
+|.+.|+.++..
T Consensus 170 ell~~l~~l~~~ 181 (213)
T 2i81_A 170 EILRIIDAIQHH 181 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888889888753
No 98
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.76 E-value=5.3e-17 Score=172.79 Aligned_cols=169 Identities=15% Similarity=0.231 Sum_probs=130.2
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-C
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN-H 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N-h 341 (762)
.+..|.|||+|+.+++||++|..+++|.+++.+|+....+.. ..+..|.||++||.++.||++|.++ +
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-----------~~~~~P~~iavdp~~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------ENGSKPRAIVVDPVHGFMYWTDWGTPA 143 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----------CTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-----------CCCCCcceEEeCCCCCEEEEEccCCCC
Confidence 578999999997789999999999999999999876554432 1367899999998899999999986 8
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~ 420 (762)
+|.++++++....++.. ..|..|.||++|+ ++.||++|+.+++|+
T Consensus 144 ~I~~~~~dG~~~~~~~~----------------------------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 144 KIKKGGLNGVDIYSLVT----------------------------------ENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp EEEEEETTSCCEEEEEC----------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEcCCCCCeEEEEE----------------------------------CCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 99999987655544421 1266899999996 589999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
++|.++....++....+ ....| .++++ +++.||++|..+++
T Consensus 190 ~~d~dg~~~~~~~~~~~----------------------------------~~~~P---~giav--~~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 190 SIDVNGGNRKTILEDEK----------------------------------RLAHP---FSLAV--FEDKVFWTDIINEA 230 (316)
T ss_dssp EEETTSCSCEEEEECTT----------------------------------TTSSE---EEEEE--ETTEEEEEETTTTE
T ss_pred EEecCCCceEEEeecCC----------------------------------ccCCc---EEEEE--ECCEEEEEECCCCe
Confidence 99998765554421100 00122 33444 57899999999999
Q ss_pred EEEEECCCC-cEEEEe
Q 004302 501 IMRLNRESG-VCSNFQ 515 (762)
Q Consensus 501 Irkidl~~~-~~sti~ 515 (762)
|.+++..+| .+.++.
T Consensus 231 V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 999998544 455553
No 99
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=99.76 E-value=5.8e-19 Score=168.97 Aligned_cols=126 Identities=16% Similarity=0.034 Sum_probs=105.6
Q ss_pred CCCCceeecccCCCccccCCCCCC--EEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCc
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGA--FLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISA 161 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK--~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e 161 (762)
-+.|+|.+.|.+|++++|++++|| +|||+|| ++||++| ..+||.|.+++++|++ -+||+|+.+
T Consensus 11 ~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C-------~~~~~~l~~~~~~~~~~~~vv~is~d------ 77 (159)
T 2a4v_A 11 DPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGS-------TRQASGFRDNYQELKEYAAVFGLSAD------ 77 (159)
T ss_dssp CBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHH-------HHHHHHHHHHHHHHTTTCEEEEEESC------
T ss_pred CCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCH-------HHHHHHHHHHHHHHHhCCcEEEEeCC------
Confidence 356778888999999999999998 9999997 9999876 9999999999999974 399999876
Q ss_pred CCHHHHHHHHHhcCCCcceeeCCCCccccccCc---e-------EEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 162 VDQTRLVEMLMKEYITFPILLSNKNFPQMENGA---C-------YLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-------t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
+.+.+++|+++++++||++.|.+..+.++|++ | +||| ++|+++..+.|......+++.++++.
T Consensus 78 -~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~ 150 (159)
T 2a4v_A 78 -SVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVL 150 (159)
T ss_dssp -CHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCccccHHHHHHHHH
Confidence 46789999999999999999988777777765 3 6999 99999999998766554444444433
No 100
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=99.76 E-value=3.2e-19 Score=181.71 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=104.8
Q ss_pred CCCCCceeecc---cCCCccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCc
Q 004302 85 EFQGPHHLWFN---IVEDNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCST 158 (762)
Q Consensus 85 ~l~g~~~~w~n---~~g~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~ 158 (762)
.-+.|+|.+.+ .+|++++|++++||+|||+||| +||+|| +.+||.|++++++|++ ++||+|+.+.
T Consensus 43 G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C-------~~~~p~l~~l~~~~~~~~v~vv~Is~D~-- 113 (222)
T 3ztl_A 43 NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVC-------PTEIIAFSDQVEEFNSRNCQVIACSTDS-- 113 (222)
T ss_dssp SEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHH-------HHHHHHHHHTHHHHHTTTEEEEEEESSC--
T ss_pred CCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCch-------HHHHHHHHHHHHHHHHCCCEEEEEECCC--
Confidence 33567788874 4568999999999999999997 999877 9999999999999964 9999999864
Q ss_pred cCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCcC----HHH
Q 004302 159 ISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSLD----IGM 217 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~~----~~~ 217 (762)
.+...+|++++ +++||++.|.+..+.+.|++ | +||||++|+|+..+.|... .++
T Consensus 114 -----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~ 188 (222)
T 3ztl_A 114 -----QYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDE 188 (222)
T ss_dssp -----HHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHH
T ss_pred -----HHHHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 66788888876 99999999998877777765 3 6999999999999877644 344
Q ss_pred HHHHHHHHH
Q 004302 218 LNKAVEELI 226 (762)
Q Consensus 218 L~~~l~~ll 226 (762)
+.++|+++.
T Consensus 189 il~~l~~l~ 197 (222)
T 3ztl_A 189 TLRLLDAFQ 197 (222)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555555443
No 101
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=99.76 E-value=2e-18 Score=168.78 Aligned_cols=131 Identities=10% Similarity=-0.025 Sum_probs=97.4
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCC-CccCCCCcchhhcHHHHHHHHHC---CC-eEEEEEEcCCCccC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNC-DSLIAGCGTVVTFEKVKSIQQSF---PQ-LQVIGFLHGCSTIS 160 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~-pC~~p~C~~~~emP~L~~L~~~y---~~-v~VvgV~~~~~~~~ 160 (762)
-+.|+|++.|.+|++++|+++|||+|||+||+|||+ +| ..+|+.|.++++++ +. +++|+|++|. .
T Consensus 10 ~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~C-------p~~~~~l~~l~~~~~~~~~~v~~v~isvDp---~ 79 (170)
T 4hde_A 10 WDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVC-------PPMTANMAKLQKMAKEEKLDVQFVSFSVDP---D 79 (170)
T ss_dssp BCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSH-------HHHHHHHHHHHHHHHHTTCCCEEEEEESCT---T
T ss_pred CcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcc-------cHHHHHHHHHHHhhhcccccceeEeeecCc---c
Confidence 467899999999999999999999999999999996 56 55555555555544 33 9999999874 2
Q ss_pred cCCHHHHHHHHHhcCCCcc---eeeCCCCc-cc----cc----------cCc----eEEEEcCCCCEEEEecCC--cCHH
Q 004302 161 AVDQTRLVEMLMKEYITFP---ILLSNKNF-PQ----ME----------NGA----CYLLSKDFGNARVFHENS--LDIG 216 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfP---Vl~D~~~~-~~----~~----------ygv----~t~lId~~G~iv~~~~G~--~~~~ 216 (762)
.++.+.+++|+++++.+++ .+.+.... +. .. |.+ .+||||++|+++.+..|. .+.+
T Consensus 80 ~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~ 159 (170)
T 4hde_A 80 LDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYE 159 (170)
T ss_dssp TCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHH
T ss_pred cccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHH
Confidence 3578999999999998776 33332210 00 11 222 269999999999887764 4457
Q ss_pred HHHHHHHHHH
Q 004302 217 MLNKAVEELI 226 (762)
Q Consensus 217 ~L~~~l~~ll 226 (762)
+|.+.|+.|+
T Consensus 160 ~l~~~ik~Ll 169 (170)
T 4hde_A 160 DIIRDMKRLA 169 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7888888776
No 102
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.76 E-value=5.7e-17 Score=166.25 Aligned_cols=165 Identities=18% Similarity=0.203 Sum_probs=126.4
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC--C
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE--N 340 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~--N 340 (762)
.+..|.+|++|+.+++|||+|.++++|.+++.+|+....+.. ..+..|.+|+++++++.|||+|.+ +
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-----------~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-----------TGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------SSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-----------CCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 468999999998789999999999999999998864433321 135779999999878999999987 7
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI 419 (762)
++|.++++++....++. . ..+..|.||+++++ +.|||+|.++++|
T Consensus 146 ~~I~~~~~dg~~~~~~~-~---------------------------------~~~~~P~gia~d~~~~~lyv~d~~~~~I 191 (267)
T 1npe_A 146 PKIETSHMDGTNRRILA-Q---------------------------------DNLGLPNGLTFDAFSSQLCWVDAGTHRA 191 (267)
T ss_dssp CEEEEEETTSCCCEEEE-C---------------------------------TTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEecCCCCcEEEE-E---------------------------------CCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence 89999988654433331 1 12568999999985 7899999999999
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
++++.+++....+..+ ...| .+++.+++.|||+|..++
T Consensus 192 ~~~~~~g~~~~~~~~~-------------------------------------~~~P-----~gi~~d~~~lyva~~~~~ 229 (267)
T 1npe_A 192 ECLNPAQPGRRKVLEG-------------------------------------LQYP-----FAVTSYGKNLYYTDWKTN 229 (267)
T ss_dssp EEEETTEEEEEEEEEC-------------------------------------CCSE-----EEEEEETTEEEEEETTTT
T ss_pred EEEecCCCceEEEecC-------------------------------------CCCc-----eEEEEeCCEEEEEECCCC
Confidence 9999976544333210 0122 234455889999999999
Q ss_pred EEEEEECCCCcE-EEE
Q 004302 500 RIMRLNRESGVC-SNF 514 (762)
Q Consensus 500 RIrkidl~~~~~-sti 514 (762)
+|++++.+++.+ .++
T Consensus 230 ~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 230 SVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCCceEEE
Confidence 999999987654 344
No 103
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=99.75 E-value=2.3e-18 Score=167.79 Aligned_cols=133 Identities=7% Similarity=-0.056 Sum_probs=106.8
Q ss_pred CCC-ceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCc
Q 004302 87 QGP-HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISA 161 (762)
Q Consensus 87 ~g~-~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e 161 (762)
+.| +|++.|.+|++++|++++||+|||+||++||++ +| ..+||.|++++++|+ +++||+|+.+. .
T Consensus 6 ~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~----~C--~~~~~~l~~~~~~~~~~~~~~~vv~is~d~----~ 75 (170)
T 3me7_A 6 YVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRA----AC--PLITKSLLKVIPKLGTPGKDFWVITFTFDP----K 75 (170)
T ss_dssp BCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCS----HH--HHHHHHHHTTHHHHCCBTTTBEEEEEECCT----T
T ss_pred cCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCc----hh--HHHHHHHHHHHHHhhhcCCceEEEEEECCC----C
Confidence 467 899999999999999999999999999999973 24 999999999999995 39999999873 2
Q ss_pred CCHHHHHHHHHhcCCCcce---ee-CC-C--CccccccCc------------e-EEEEcCCCCEEEEecCC-cCHHHHHH
Q 004302 162 VDQTRLVEMLMKEYITFPI---LL-SN-K--NFPQMENGA------------C-YLLSKDFGNARVFHENS-LDIGMLNK 220 (762)
Q Consensus 162 ~~~~~v~~f~~k~~itfPV---l~-D~-~--~~~~~~ygv------------~-t~lId~~G~iv~~~~G~-~~~~~L~~ 220 (762)
++.+.+++|+++++++||. ++ ++ + ..+.++||+ + +||||++|+++.++.|. .+.++|.+
T Consensus 76 d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~ 155 (170)
T 3me7_A 76 DTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVN 155 (170)
T ss_dssp CCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHH
Confidence 5789999999999998873 33 22 1 233444432 2 69999999999988886 66778888
Q ss_pred HHHHHHHhh
Q 004302 221 AVEELIMQQ 229 (762)
Q Consensus 221 ~l~~ll~~~ 229 (762)
+|+++....
T Consensus 156 ~l~~~~~~~ 164 (170)
T 3me7_A 156 ALRLARGEG 164 (170)
T ss_dssp HHHHHTTCS
T ss_pred HHHHhhccc
Confidence 888776653
No 104
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=99.74 E-value=5.3e-18 Score=172.60 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=108.4
Q ss_pred CCCceeec---ccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccC
Q 004302 87 QGPHHLWF---NIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTIS 160 (762)
Q Consensus 87 ~g~~~~w~---n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~ 160 (762)
+.|+|.+. |.+|++++|++++||+|||+|| ++||++| ..++|.|.+++++|+ +++||+|+.+.
T Consensus 32 ~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C-------~~~~~~l~~l~~~~~~~~v~vv~Is~D~---- 100 (220)
T 1zye_A 32 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVC-------PTEIIAFSDKASEFHDVNCEVVAVSVDS---- 100 (220)
T ss_dssp BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSS-------HHHHHHHHHHHHHHHHTTEEEEEEESSC----
T ss_pred CCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCC----
Confidence 34555554 4577899999999999999999 9999866 999999999999995 59999999874
Q ss_pred cCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCc----CHHHHH
Q 004302 161 AVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSL----DIGMLN 219 (762)
Q Consensus 161 e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~----~~~~L~ 219 (762)
.+.+.+|++++ +++||++.|.+..+.+.|++. +||||++|+++....|.. +.+++.
T Consensus 101 ---~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell 177 (220)
T 1zye_A 101 ---HFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETL 177 (220)
T ss_dssp ---HHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 57788999887 899999999888778887653 499999999999888764 457888
Q ss_pred HHHHHHHHhhccCCCCCCCccchhhhhhhhccC
Q 004302 220 KAVEELIMQQQENSSSPSGLKCTWAKQAEVLKE 252 (762)
Q Consensus 220 ~~l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~~ 252 (762)
+.|++|+... .+ ...-+..|..-.+++..
T Consensus 178 ~~l~~l~~~~-~~---~~~cp~~W~~g~~~~~~ 206 (220)
T 1zye_A 178 RLVKAFQFVE-AH---GEVSPANWTPESPTIKP 206 (220)
T ss_dssp HHHHHHHHTT-C---------------------
T ss_pred HHHHHhhhhc-cc---CCccCCCCCCCCceecC
Confidence 8888877642 12 23344567665566653
No 105
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=99.74 E-value=2e-18 Score=168.80 Aligned_cols=111 Identities=10% Similarity=-0.058 Sum_probs=98.0
Q ss_pred CCCceeec-ccCCCccccCCC-CCCEEEEEEe-ccCCCCccCCCCcchh-hcHHHHHHHHHCC--Ce-EEEEEEcCCCcc
Q 004302 87 QGPHHLWF-NIVEDNIHFFKR-GGAFLVLAGR-FVDNCDSLIAGCGTVV-TFEKVKSIQQSFP--QL-QVIGFLHGCSTI 159 (762)
Q Consensus 87 ~g~~~~w~-n~~g~~v~Lsd~-rGK~VvLnFW-AtWC~pC~~p~C~~~~-emP~L~~L~~~y~--~v-~VvgV~~~~~~~ 159 (762)
+.|+|.+. +.+|+.++|+++ +||+|||+|| |+||++| .. |||.|.+++++|+ ++ +||+|+.+
T Consensus 8 ~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C-------~~~e~p~l~~~~~~~~~~gv~~vv~Is~d---- 76 (167)
T 2wfc_A 8 KLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGS-------SKTHLPGYVEQAAAIHGKGVDIIACMAVN---- 76 (167)
T ss_dssp BCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHH-------HHTHHHHHHHTHHHHHHTTCCEEEEEESS----
T ss_pred cCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEeCC----
Confidence 46778888 889999999998 9999999986 9999876 99 9999999999996 49 99999976
Q ss_pred CcCCHHHHHHHHHhcCCC--cceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecCC
Q 004302 160 SAVDQTRLVEMLMKEYIT--FPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHENS 212 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~~it--fPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G~ 212 (762)
+.+.+++|+++++++ ||++.|.+..+.++||+ | +||| ++|+|+..+.+.
T Consensus 77 ---~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~ 142 (167)
T 2wfc_A 77 ---DSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEP 142 (167)
T ss_dssp ---CHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECT
T ss_pred ---CHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecC
Confidence 467899999999999 99999998888888874 5 5899 999999988775
No 106
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=99.74 E-value=2.6e-18 Score=163.84 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=102.7
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
.-+.|+|.+.+.+|+.+++++++||+|||+||++||++| +.++|.|++++++|++ ++||+|+.+.
T Consensus 18 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~v~~d~------ 84 (158)
T 3hdc_A 18 GALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYC-------RDEMPSMDRLVKSFPKGDLVVLAVNVEK------ 84 (158)
T ss_dssp TSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHSSTTSEEEEEEECSS------
T ss_pred CCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHH-------HHHHHHHHHHHHHcccCCeEEEEEeCCH------
Confidence 345678888999999999999999999999999999876 9999999999999983 9999998874
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHH
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIG 216 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~ 216 (762)
.+.+|+++++++||++.|....+.+.|++ | +||||++|+++.+..|..+++
T Consensus 85 ---~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 85 ---RFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp ---SCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred ---HHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccc
Confidence 46789999999999999998888888865 4 499999999999999987744
No 107
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=99.74 E-value=1.6e-18 Score=179.19 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=106.4
Q ss_pred CCCCCceeec---ccCCCccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCc
Q 004302 85 EFQGPHHLWF---NIVEDNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCST 158 (762)
Q Consensus 85 ~l~g~~~~w~---n~~g~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~ 158 (762)
.-+.|+|.+. |.+|++++|++++||+|||+||+ +||++| ..|||.|.+++++|++ ++||+|+.+.
T Consensus 51 G~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C-------~~el~~l~~l~~~~~~~gv~vv~Is~D~-- 121 (240)
T 3qpm_A 51 SKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVC-------PTEIIAFSDRVHEFRAINTEVVACSVDS-- 121 (240)
T ss_dssp TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHH-------HHHHHHHHHHHHHHHTTTEEEEEEESSC--
T ss_pred CCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCch-------HHHHHHHHHHHHHHHHCCCEEEEEECCC--
Confidence 3456777754 55677999999999999999999 999876 9999999999999974 9999999874
Q ss_pred cCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCc----CHHH
Q 004302 159 ISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSL----DIGM 217 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~----~~~~ 217 (762)
.+.+.+|++++ +++||++.|.+..+.++||+ | +||||++|+|+..+.+.. +.++
T Consensus 122 -----~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~e 196 (240)
T 3qpm_A 122 -----QFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDE 196 (240)
T ss_dssp -----HHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred -----HHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHH
Confidence 67888999886 89999999999888888876 3 599999999999876643 3456
Q ss_pred HHHHHHHHHH
Q 004302 218 LNKAVEELIM 227 (762)
Q Consensus 218 L~~~l~~ll~ 227 (762)
+.+.|+.+..
T Consensus 197 il~~l~~lq~ 206 (240)
T 3qpm_A 197 TLRLVQAFQY 206 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 6666666543
No 108
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=99.74 E-value=1.1e-18 Score=168.51 Aligned_cols=111 Identities=8% Similarity=-0.058 Sum_probs=96.7
Q ss_pred CCCceeec--ccCC--CccccCC-CCCCEEEEEEe-ccCCCCccCCCCcch-hhcHHHHHHHHHCC--CeE-EEEEEcCC
Q 004302 87 QGPHHLWF--NIVE--DNIHFFK-RGGAFLVLAGR-FVDNCDSLIAGCGTV-VTFEKVKSIQQSFP--QLQ-VIGFLHGC 156 (762)
Q Consensus 87 ~g~~~~w~--n~~g--~~v~Lsd-~rGK~VvLnFW-AtWC~pC~~p~C~~~-~emP~L~~L~~~y~--~v~-VvgV~~~~ 156 (762)
+.|+|++. +.+| ++++|++ ++||+|||+|| ++||++| . .|||.|.+++++|+ +++ ||+|+.+
T Consensus 9 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C-------~~~e~~~l~~~~~~~~~~~v~~vv~Is~d- 80 (162)
T 1tp9_A 9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTC-------SLKHVPGFIEKAGELKSKGVTEILCISVN- 80 (162)
T ss_dssp BCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHH-------HHTHHHHHHHHHHHHHHTTCCCEEEEESS-
T ss_pred CCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEECC-
Confidence 45666663 7888 8999999 99999999999 8999876 9 89999999999996 499 9999976
Q ss_pred CccCcCCHHHHHHHHHhcCC--CcceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecCC
Q 004302 157 STISAVDQTRLVEMLMKEYI--TFPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHENS 212 (762)
Q Consensus 157 ~~~~e~~~~~v~~f~~k~~i--tfPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G~ 212 (762)
+.+.+++|++++++ +||++.|.+..+.++||+ | +|||| +|+++..+.|+
T Consensus 81 ------~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~ 146 (162)
T 1tp9_A 81 ------DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG 146 (162)
T ss_dssp ------CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred ------CHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence 46789999999999 899999988877777764 4 59999 99999988876
No 109
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.73 E-value=1.9e-16 Score=184.87 Aligned_cols=221 Identities=14% Similarity=0.052 Sum_probs=161.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc-EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK-ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~-i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
.|..|.+|++|+.++.||++|..+++|++++.+|. ...++.. .+..|.|||+|+.+++||++|.+++
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~------------g~~~P~GlAvD~~~~~LY~tD~~~~ 102 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF------------GLDYPEGMAVDWLGKNLYWADTGTN 102 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC------------CCCCcceEEEEeCCCEEEEEECCCC
Confidence 57899999999989999999999999999999875 3344432 2467999999988899999999999
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECC-CCEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRS-FETL 419 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~g-N~rI 419 (762)
+|.++++++....++.. ..|..|.+|++|+ +|.||++|.+ +++|
T Consensus 103 ~I~v~~~dG~~~~~l~~----------------------------------~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 103 RIEVSKLDGQHRQVLVW----------------------------------KDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp EEEEEETTSTTCEEEEC----------------------------------SSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEEecCCCcEEEEEe----------------------------------CCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 99999987665545421 1266899999997 6999999987 8899
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
+++++++.....++.+. .. |.|.+++..++.||++|+.++
T Consensus 149 ~r~~~dG~~~~~l~~~~-------------------------------------~~---P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 149 DRAAMDGSERTTLVPNV-------------------------------------GR---ANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EEEETTSCSCEEEECSC-------------------------------------SS---EEEEEEETTTTEEEEEETTTT
T ss_pred EEEeCCCCceEEEECCC-------------------------------------CC---cceEEEccccCEEEEEECCCC
Confidence 99999887665543110 12 245777777899999999999
Q ss_pred EEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCcee--EEEEEecCCCcccccc
Q 004302 500 RIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID--IKVNVDIPSDTELVES 577 (762)
Q Consensus 500 RIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~--~~v~v~~p~~~~l~~p 577 (762)
+|.+++++++....+. +.+..|+.+..--+++|... .....+.+++...|.-. +...+.-|.|+.++.|
T Consensus 189 ~I~~~d~dG~~~~v~~----~~l~~P~glav~~~~ly~tD-----~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~ 259 (628)
T 4a0p_A 189 LIESSNMLGLNREVIA----DDLPHPFGLTQYQDYIYWTD-----WSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHS 259 (628)
T ss_dssp EEEEEETTSCSCEEEE----ECCSCEEEEEEETTEEEEEE-----TTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECG
T ss_pred EEEEEcCCCCceEEee----ccCCCceEEEEECCEEEEec-----CCCCEEEEEECCCCCceEEEecCCCCcceeeeeee
Confidence 9999999987664432 12345555444334555332 22345666676666542 2223345778877666
Q ss_pred c
Q 004302 578 L 578 (762)
Q Consensus 578 ~ 578 (762)
.
T Consensus 260 ~ 260 (628)
T 4a0p_A 260 S 260 (628)
T ss_dssp G
T ss_pred c
Confidence 4
No 110
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=99.73 E-value=5.3e-18 Score=177.13 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=107.1
Q ss_pred CCCCCceeec---ccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCc
Q 004302 85 EFQGPHHLWF---NIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCST 158 (762)
Q Consensus 85 ~l~g~~~~w~---n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~ 158 (762)
.-+.|+|.+. |.+|++++|++++||+|||+|| ++||++| ..|||.|.+++++|++ ++||+|+.+.
T Consensus 65 G~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C-------~~el~~l~~l~~~~~~~gv~vv~IS~D~-- 135 (254)
T 3tjj_A 65 SKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVC-------PTEIIAFGDRLEEFRSINTEVVACSVDS-- 135 (254)
T ss_dssp TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSC-------CHHHHHHHHTHHHHHTTTEEEEEEESSC--
T ss_pred CCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCch-------HHHHHHHHHHHHHHHHcCCEEEEEcCCC--
Confidence 3467777754 5678899999999999999999 9999866 9999999999999964 9999999874
Q ss_pred cCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCc----CHHH
Q 004302 159 ISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSL----DIGM 217 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~----~~~~ 217 (762)
.....+|++++ +++||++.|.+..+.++||+ | +||||++|+|+..+.+.. +.++
T Consensus 136 -----~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~e 210 (254)
T 3tjj_A 136 -----QFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE 210 (254)
T ss_dssp -----HHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred -----HHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 67888999886 89999999999888888876 4 699999999999877633 3456
Q ss_pred HHHHHHHHHH
Q 004302 218 LNKAVEELIM 227 (762)
Q Consensus 218 L~~~l~~ll~ 227 (762)
+.+.|+.+..
T Consensus 211 il~~L~alq~ 220 (254)
T 3tjj_A 211 TLRLVQAFQY 220 (254)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 6666666543
No 111
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.73 E-value=1.4e-16 Score=185.54 Aligned_cols=224 Identities=14% Similarity=0.046 Sum_probs=155.4
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcE--EEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKI--LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i--~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
..|..|.+|++++.++.||++|..+++|++++.+|.- ..++.. .+..|.|||+|+.+++||++|+.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~------------~~~~P~GlAvD~~~~~ly~~d~~ 104 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------------GLLSPDGLACDWLGEKLYWTDSE 104 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS------------SCSCEEEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC------------CCCCcCeEEEEecCCEEEEEeCC
Confidence 3688999999998899999999999999999998862 334432 25679999999888999999999
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECC-CC
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRS-FE 417 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~g-N~ 417 (762)
+++|.++++++....++.. ..|+.|.+|++|+. |.||++|.+ ++
T Consensus 105 ~~~I~v~~~dG~~~~~l~~----------------------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~ 150 (619)
T 3s94_A 105 TNRIEVSNLDGSLRKVLFW----------------------------------QELDQPRAIALDPSSGFMYWTDWGEVP 150 (619)
T ss_dssp TTEEEEEETTSCSCEEEEC----------------------------------SSCSCCCCEEEETTTTEEEEEECSSSC
T ss_pred CCEEEEEECCCCCEEEEEe----------------------------------CCCCCCceEEEecCCCeEEEeccCCCC
Confidence 9999999998776666631 12668999999985 899999987 67
Q ss_pred EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 418 TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 418 rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
+|+++++++....++... ....|.|.+++..++.||++|+.
T Consensus 151 ~I~r~~~dG~~~~~l~~~---------------------------------------~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 151 KIERAGMDGSSRFIIINS---------------------------------------EIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEEEEETTSCSCEEEECS---------------------------------------SCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCceEEEEeC---------------------------------------CCCCCcEEEEEccCCEEEEEeCC
Confidence 999999987655444210 01123567777778999999999
Q ss_pred CCEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCceeEE--EEEecCCCcccc
Q 004302 498 GQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIK--VNVDIPSDTELV 575 (762)
Q Consensus 498 NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~~--v~v~~p~~~~l~ 575 (762)
+++|.+++++|....++.. +.+..|+.+..--+++|... .....+.+++...|+.... ..+.-|.|+.++
T Consensus 192 ~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~~ly~td-----~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~ 263 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFEDILYWTD-----WSTHSILACNKYTGEGLREIHSDIFSPMDIHAF 263 (619)
T ss_dssp TCCEEEESSSCCEEC------------CCCEEESSSEEEEEC-----TTTCSEEEEESSSCCCCEECCSCCCCCSEEEEC
T ss_pred CCeEEEecCCCCccEEEEe---CCCCCceEEEEeCCEEEEec-----CCCCEEEEEECCCCcccEEEecCCCCCcEEEEE
Confidence 9999999999977665532 23455655544344555332 2234556666656643211 122347777776
Q ss_pred ccc
Q 004302 576 ESL 578 (762)
Q Consensus 576 ~p~ 578 (762)
.|.
T Consensus 264 ~~~ 266 (619)
T 3s94_A 264 SQQ 266 (619)
T ss_dssp CGG
T ss_pred ccc
Confidence 553
No 112
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=99.73 E-value=1.6e-18 Score=172.54 Aligned_cols=124 Identities=6% Similarity=-0.125 Sum_probs=102.5
Q ss_pred CCCCceeeccc--CC-CccccCC-CCCCEE-EEEEeccCCCCccCCCCcchh-hcHHHHHHHHHCCC--eE-EEEEEcCC
Q 004302 86 FQGPHHLWFNI--VE-DNIHFFK-RGGAFL-VLAGRFVDNCDSLIAGCGTVV-TFEKVKSIQQSFPQ--LQ-VIGFLHGC 156 (762)
Q Consensus 86 l~g~~~~w~n~--~g-~~v~Lsd-~rGK~V-vLnFWAtWC~pC~~p~C~~~~-emP~L~~L~~~y~~--v~-VvgV~~~~ 156 (762)
-+.|+|++.+. +| ++++|++ ++||+| |+.|||+||++| .. |||.|++++++|++ ++ ||||+.++
T Consensus 30 ~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C-------~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~ 102 (184)
T 3uma_A 30 DKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTC-------SLNHLPGYLENRDAILARGVDDIAVVAVND 102 (184)
T ss_dssp CBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHH-------HHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred CCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCc-------CHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 35677888887 88 8999999 899955 555779999877 99 89999999999964 88 99999864
Q ss_pred CccCcCCHHHHHHHHHhcCCC--cceeeCCCCccccccCce---------------EEEEcCCCCEEEEecCC----cCH
Q 004302 157 STISAVDQTRLVEMLMKEYIT--FPILLSNKNFPQMENGAC---------------YLLSKDFGNARVFHENS----LDI 215 (762)
Q Consensus 157 ~~~~e~~~~~v~~f~~k~~it--fPVl~D~~~~~~~~ygv~---------------t~lId~~G~iv~~~~G~----~~~ 215 (762)
...+++|+++++++ ||++.|.+..+.++||+. +|||| +|+|+..+.++ .+.
T Consensus 103 -------~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~ 174 (184)
T 3uma_A 103 -------LHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATA 174 (184)
T ss_dssp -------HHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCST
T ss_pred -------HHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcC
Confidence 77899999999999 999999998888888762 68886 99999988765 344
Q ss_pred HHHHHHHHH
Q 004302 216 GMLNKAVEE 224 (762)
Q Consensus 216 ~~L~~~l~~ 224 (762)
.++++.|++
T Consensus 175 ~~~~~vL~~ 183 (184)
T 3uma_A 175 SGAAAMLEL 183 (184)
T ss_dssp TSHHHHHHH
T ss_pred CCHHHHHhh
Confidence 566666654
No 113
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=99.73 E-value=1.7e-18 Score=169.50 Aligned_cols=112 Identities=5% Similarity=-0.139 Sum_probs=93.0
Q ss_pred CCCceeeccc----CC-----CccccCCC-CCC-EEEEEEeccCCCCccCCCCcchhh-cHHHHHHHHHCC--CeE-EEE
Q 004302 87 QGPHHLWFNI----VE-----DNIHFFKR-GGA-FLVLAGRFVDNCDSLIAGCGTVVT-FEKVKSIQQSFP--QLQ-VIG 151 (762)
Q Consensus 87 ~g~~~~w~n~----~g-----~~v~Lsd~-rGK-~VvLnFWAtWC~pC~~p~C~~~~e-mP~L~~L~~~y~--~v~-Vvg 151 (762)
+.|+|.+.+. +| +.++|+++ +|| +||++|||+||+|| ..| ||.|.+++++|+ +++ |||
T Consensus 12 ~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C-------~~eh~p~l~~~~~~~~~~g~~~vv~ 84 (171)
T 2pwj_A 12 AASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVC-------SSKHVPPYKHNIDKFKAKGVDSVIC 84 (171)
T ss_dssp CSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTH-------HHHTHHHHHHTHHHHHHTTCSEEEE
T ss_pred cCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3455555555 35 79999996 996 77789999999866 999 999999999996 488 999
Q ss_pred EEcCCCccCcCCHHHHHHHHHhcCC--CcceeeCCCCccccccCc---------------eEEEEcCCCCEEEEecCCc
Q 004302 152 FLHGCSTISAVDQTRLVEMLMKEYI--TFPILLSNKNFPQMENGA---------------CYLLSKDFGNARVFHENSL 213 (762)
Q Consensus 152 V~~~~~~~~e~~~~~v~~f~~k~~i--tfPVl~D~~~~~~~~ygv---------------~t~lId~~G~iv~~~~G~~ 213 (762)
|+.++ ...+++|++++++ +||++.|.+..+.++||+ ++|+|| +|+|++.+.|..
T Consensus 85 Is~d~-------~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~ 155 (171)
T 2pwj_A 85 VAIND-------PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEES 155 (171)
T ss_dssp EESSC-------HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSS
T ss_pred EeCCC-------HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecC
Confidence 99864 6789999999996 799999998877777765 268889 999999988764
No 114
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=99.72 E-value=4.8e-18 Score=167.50 Aligned_cols=125 Identities=10% Similarity=-0.023 Sum_probs=102.3
Q ss_pred CCCCCceeec-ccCCCccccCC-CCCCEEEE-EEeccCCCCccCCCCcch-hhcHHHHHHHHHCCC--eEEEE-EEcCCC
Q 004302 85 EFQGPHHLWF-NIVEDNIHFFK-RGGAFLVL-AGRFVDNCDSLIAGCGTV-VTFEKVKSIQQSFPQ--LQVIG-FLHGCS 157 (762)
Q Consensus 85 ~l~g~~~~w~-n~~g~~v~Lsd-~rGK~VvL-nFWAtWC~pC~~p~C~~~-~emP~L~~L~~~y~~--v~Vvg-V~~~~~ 157 (762)
.-++|+|++. +.+|++++|++ ++||+||| +|||+||++| . .|||.|.+++++|++ ++||| |+.+
T Consensus 18 G~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C-------~~~e~p~l~~~~~~~~~~gv~vv~~iS~D-- 88 (173)
T 3mng_A 18 GDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGC-------SKTHLPGFVEQAEALKAKGVQVVACLSVN-- 88 (173)
T ss_dssp TCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHH-------HHTHHHHHHHTHHHHHTTTCCEEEEEESS--
T ss_pred CCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCC-------CHHHHHHHHHHHHHHHhCCCEEEEEEcCC--
Confidence 3457788888 88999999999 69996655 5569999877 9 599999999999965 99997 8776
Q ss_pred ccCcCCHHHHHHHHHhcCCC--cceeeCCCCccccccCc----------------e-EEEEcCCCCEEEEecCCc----C
Q 004302 158 TISAVDQTRLVEMLMKEYIT--FPILLSNKNFPQMENGA----------------C-YLLSKDFGNARVFHENSL----D 214 (762)
Q Consensus 158 ~~~e~~~~~v~~f~~k~~it--fPVl~D~~~~~~~~ygv----------------~-t~lId~~G~iv~~~~G~~----~ 214 (762)
+...+++|+++++++ ||++.|.+..+.++||+ | +|||| +|+|++.+.+.. +
T Consensus 89 -----~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~ 162 (173)
T 3mng_A 89 -----DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLT 162 (173)
T ss_dssp -----CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSS
T ss_pred -----CHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcc
Confidence 478899999999998 99999999877777764 4 69999 999999987754 3
Q ss_pred HHHHHHHHHH
Q 004302 215 IGMLNKAVEE 224 (762)
Q Consensus 215 ~~~L~~~l~~ 224 (762)
..++++.|+.
T Consensus 163 ~~~~~~vl~~ 172 (173)
T 3mng_A 163 CSLAPNIISQ 172 (173)
T ss_dssp TTSHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 4556666654
No 115
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.72 E-value=4.3e-16 Score=181.52 Aligned_cols=204 Identities=11% Similarity=-0.002 Sum_probs=152.2
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc-EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK-ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~-i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
..|..|.+|++|+.+++||++|..+++|++++.+|. ...++. ..+..|.|||+|..+++||++|+++
T Consensus 346 ~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~------------~~~~~p~GlAvD~~~~~lY~tD~~~ 413 (619)
T 3s94_A 346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT------------AQIAHPDGIAVDWVARNLYWTDTGT 413 (619)
T ss_dssp SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SSCSCCCEEEEETTTTEEEEEETTT
T ss_pred cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE------------CCCCCcCceEEecccCcEEEEeCCC
Confidence 358889999999889999999999999999999884 333332 2367899999997789999999999
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCC-CE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSF-ET 418 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN-~r 418 (762)
++|.++++++....++.. ..|+.|++|++++. |.||++|.++ .+
T Consensus 414 ~~I~v~~~~G~~~~~l~~----------------------------------~~l~~P~~iavdp~~G~ly~tD~g~~~~ 459 (619)
T 3s94_A 414 DRIEVTRLNGTMRKILIS----------------------------------EDLEEPRAIVLDPMVGYMYWTDWGEIPK 459 (619)
T ss_dssp TEEEEEETTSCSCEEEEC----------------------------------TTCCSEEEEEEETTTTEEEEEECSSSCE
T ss_pred CcEEEEeCCCCeEEEEEE----------------------------------CCCCCeeeEEEEcCCCcEEEecCCCCCE
Confidence 999999988765555531 12778999999985 9999999886 79
Q ss_pred EEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC
Q 004302 419 LWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 498 (762)
Q Consensus 419 I~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N 498 (762)
|+++++++.....++.+ ....|.|.+++..++.||++|+.+
T Consensus 460 I~r~~~dG~~~~~l~~~---------------------------------------~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 460 IERAALDGSDRVVLVNT---------------------------------------SLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp EEEEETTSCSCEEEECS---------------------------------------SCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEccCCCccEEEEeC---------------------------------------CCCCCeeeEEcccCCEEEEEECCC
Confidence 99999876554433211 011234577777789999999999
Q ss_pred CEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCC
Q 004302 499 QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPG 558 (762)
Q Consensus 499 hRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG 558 (762)
++|.++++++....++.. +.+..|+.+..--+.+|... ...+.+++++...|
T Consensus 501 ~~I~~~~~dG~~~~~~~~---~~l~~P~glav~~~~ly~tD-----~~~~~I~~~~k~~g 552 (619)
T 3s94_A 501 DKIEVMNTDGTGRRVLVE---DKIPHIFGFTLLGDYVYWTD-----WQRRSIERVHKRSA 552 (619)
T ss_dssp TEEEEEESSSCCCEEEEE---CCCCSSCCEEEETTEEEEEC-----TTSSCEEEEESSSC
T ss_pred CEEEEEecCCCceEEEec---cCCCCcEEEEEECCEEEEee-----cCCCeEEEEEcCCC
Confidence 999999999987776642 23445655444334455433 33456777777777
No 116
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=99.72 E-value=2.8e-17 Score=168.78 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=108.5
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcch-----hhcHHHHHHHHHCCCeEEEEEEcCCCccC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTV-----VTFEKVKSIQQSFPQLQVIGFLHGCSTIS 160 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~-----~emP~L~~L~~~y~~v~VvgV~~~~~~~~ 160 (762)
-++|+|++.+.+|+.++|++++||+|||+||++||+ |+| . .|||.|.++ |.+++||+|+.+
T Consensus 26 ~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~c----p~C--~~~~~~~El~~~~~~---~~gv~VvgIS~D----- 91 (224)
T 3keb_A 26 DYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDE----DEH--AGLLLLRETRRFLDS---WPHLKLIVITVD----- 91 (224)
T ss_dssp CBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTC----STT--TSHHHHHHHHHHHTT---CTTSEEEEEESS-----
T ss_pred CCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCC----CCC--CCCccHHHHHHHHHH---cCCCEEEEEECC-----
Confidence 467889999999999999999999999999999941 466 8 899988887 677999999976
Q ss_pred cCCHHHHHHHHHhcCC-CcceeeCC-CCccccccCc------------e-EEEEcCCCCEEEEec-----CCcCHHHHHH
Q 004302 161 AVDQTRLVEMLMKEYI-TFPILLSN-KNFPQMENGA------------C-YLLSKDFGNARVFHE-----NSLDIGMLNK 220 (762)
Q Consensus 161 e~~~~~v~~f~~k~~i-tfPVl~D~-~~~~~~~ygv------------~-t~lId~~G~iv~~~~-----G~~~~~~L~~ 220 (762)
+...+++|++++++ +||++.|. +..+.++||+ | +||||++|+|++.+. +..+.+++.+
T Consensus 92 --s~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~ 169 (224)
T 3keb_A 92 --SPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEK 169 (224)
T ss_dssp --CHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHH
T ss_pred --CHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHH
Confidence 47889999999999 79999997 5777777764 4 699999999998764 3566888999
Q ss_pred HHHHHHHhhccC
Q 004302 221 AVEELIMQQQEN 232 (762)
Q Consensus 221 ~l~~ll~~~~~~ 232 (762)
+|+.+..+..+.
T Consensus 170 ~L~~l~~~~~~~ 181 (224)
T 3keb_A 170 LLQEGEQQAMAA 181 (224)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHhhhccccc
Confidence 999988875433
No 117
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.71 E-value=2.6e-17 Score=194.19 Aligned_cols=229 Identities=15% Similarity=0.071 Sum_probs=160.3
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.+|++++.++.||++|..+++|++++.+|.. .|+.. .......+..|.|||+++.+++|||+|..+++
T Consensus 404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~---~~~~~----~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH---GVSSY----DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCC---C-CCC----CCBCCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred cCcceEEEccccccCeEEEEecCCCeEEEEecCCCC---CCcce----EEEEeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence 478999999998889999999999999999998731 11110 01112357789999999778999999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCC-CEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSF-ETLW 420 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN-~rI~ 420 (762)
|.+++++++.+.+++.. .+..|.+|++++ +|.||++|.++ ++|+
T Consensus 477 I~v~d~dg~~~~~l~~~----------------------------------~~~~P~giavDp~~g~ly~td~~~~~~I~ 522 (699)
T 1n7d_A 477 VSVADTKGVKRKTLFRE----------------------------------QGSKPRAIVVDPVHGFMYWTDWGTPAKIK 522 (699)
T ss_dssp EEEEBSSSCCEEEECCC----------------------------------SSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred EEEEecCCCceEEEEeC----------------------------------CCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence 99999988777766322 155799999998 58999999886 8999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
++++++.....++. .+ -..| .+++++..++.|||+|+.+++
T Consensus 523 ~~~~dG~~~~~l~~-~~-----------------------------------l~~P---nGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 523 KGGLNGVDIYSLVT-EN-----------------------------------IQWP---NGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp BCCSSSCCCCEESC-SS-----------------------------------CSSC---CCEEECTTTCCEEEEETTTTE
T ss_pred EEeCCCCCeeEEEe-CC-----------------------------------CCCc---cEEEEeccCCEEEEEecCCCe
Confidence 99886543322210 00 0123 457777778999999999999
Q ss_pred EEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCceeEEE--EEecCCCcccccc
Q 004302 501 IMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKV--NVDIPSDTELVES 577 (762)
Q Consensus 501 Irkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~~v--~v~~p~~~~l~~p 577 (762)
|.++++++....++. ...+.++.|..+..--+++|.... ...++++++...|+..-.| .+.-|.++.++.|
T Consensus 564 I~~~d~dG~~~~~~~-~~~~~~~~P~glavd~~~lywtd~-----~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 564 ISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTDI-----INEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ 636 (699)
T ss_dssp EEEECSSSSCCEEEC-CCSSSCSSCCCCEEETTEEEEECS-----TTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred EEEEccCCCceEEEE-ecCCcCCCceEeEEECCEEEEEeC-----CCCeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence 999999987666553 222345566665554456665442 2356777777667653222 2334777777666
No 118
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=99.70 E-value=1.1e-17 Score=171.49 Aligned_cols=125 Identities=6% Similarity=-0.020 Sum_probs=104.0
Q ss_pred CCCCceeeccc-CCC--ccccCC-CCCCEEEEEEe-ccCCCCccCCCCcch-hhcHHHHHHHHHCC--Ce-EEEEEEcCC
Q 004302 86 FQGPHHLWFNI-VED--NIHFFK-RGGAFLVLAGR-FVDNCDSLIAGCGTV-VTFEKVKSIQQSFP--QL-QVIGFLHGC 156 (762)
Q Consensus 86 l~g~~~~w~n~-~g~--~v~Lsd-~rGK~VvLnFW-AtWC~pC~~p~C~~~-~emP~L~~L~~~y~--~v-~VvgV~~~~ 156 (762)
-+.|+|.+.+. +|+ .++|++ ++||+|||+|| |+||+|| . .|||.|.+++++|+ ++ +||||+.+
T Consensus 7 ~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C-------~~~e~~~l~~~~~~~~~~~~~~vv~is~d- 78 (241)
T 1nm3_A 7 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTC-------SSSHLPRYNELAPVFKKYGVDDILVVSVN- 78 (241)
T ss_dssp SBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHH-------HHTHHHHHHHHHHHHHHTTCCEEEEEESS-
T ss_pred CCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEEcC-
Confidence 35677888886 666 899999 99999999999 9999876 9 99999999999996 49 99999976
Q ss_pred CccCcCCHHHHHHHHHhcCCC-cceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecCCcCH-----
Q 004302 157 STISAVDQTRLVEMLMKEYIT-FPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHENSLDI----- 215 (762)
Q Consensus 157 ~~~~e~~~~~v~~f~~k~~it-fPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G~~~~----- 215 (762)
+...+++|+++++++ ||++.|.+..+.++||+ | +||| ++|+|+..+.|....
T Consensus 79 ------~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~ 151 (241)
T 1nm3_A 79 ------DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFK 151 (241)
T ss_dssp ------CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCS
T ss_pred ------CHHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccce
Confidence 367899999999997 99999998887877765 3 5899 999999998886443
Q ss_pred -HHHHHHHHHH
Q 004302 216 -GMLNKAVEEL 225 (762)
Q Consensus 216 -~~L~~~l~~l 225 (762)
..+++.++.+
T Consensus 152 ~~~~~~il~~l 162 (241)
T 1nm3_A 152 VSDADTMLKYL 162 (241)
T ss_dssp SSSHHHHHHHH
T ss_pred ecCHHHHHHHh
Confidence 3455555544
No 119
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=99.70 E-value=2.2e-17 Score=169.01 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=108.0
Q ss_pred CCCCceeecccCCCccccCCCCCC--EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCc
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGA--FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISA 161 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK--~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e 161 (762)
-+.|+|+..+.+| .++|++++|| +||++|||+||++| ..|||.|.+++++|++ ++||||+.+.
T Consensus 9 ~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C-------~~el~~l~~l~~~f~~~~v~vi~IS~D~----- 75 (224)
T 1prx_A 9 DVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVC-------TTELGRAAKLAPEFAKRNVKLIALSIDS----- 75 (224)
T ss_dssp CBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHH-------HHHHHHHHHHHHHHHTTTEEEEEEESSC-----
T ss_pred CCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCc-------HHHHHHHHHHHHHHHHCCCEEEEEcCCC-----
Confidence 3577888889999 9999999998 67777899999876 9999999999999975 9999999874
Q ss_pred CCHHHHHHHHHh----------cCCCcceeeCCCCccccccCc---------------e-EEEEcCCCCEEEEecCCc--
Q 004302 162 VDQTRLVEMLMK----------EYITFPILLSNKNFPQMENGA---------------C-YLLSKDFGNARVFHENSL-- 213 (762)
Q Consensus 162 ~~~~~v~~f~~k----------~~itfPVl~D~~~~~~~~ygv---------------~-t~lId~~G~iv~~~~G~~-- 213 (762)
...+.+|+++ ++++||++.|.+..+.++||+ | +||||++|+|+..+.+..
T Consensus 76 --~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~ 153 (224)
T 1prx_A 76 --VEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATT 153 (224)
T ss_dssp --HHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTB
T ss_pred --HHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCC
Confidence 5667778876 899999999988777777764 3 699999999999887643
Q ss_pred --CHHHHHHHHHHHHHh
Q 004302 214 --DIGMLNKAVEELIMQ 228 (762)
Q Consensus 214 --~~~~L~~~l~~ll~~ 228 (762)
+.+++.+.|+.|+..
T Consensus 154 gr~~~eil~~i~~l~~~ 170 (224)
T 1prx_A 154 GRNFDEILRVVISLQLT 170 (224)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 578888889888764
No 120
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=2.9e-15 Score=153.39 Aligned_cols=194 Identities=14% Similarity=0.207 Sum_probs=140.9
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE- 339 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~- 339 (762)
.+.|..|.+|++++ +++|||+|..+++|+++|.+|+.+..++.. +. ....+..|.+|++++.++.|||+|..
T Consensus 26 ~g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~-~~-----~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGEC-GK-----RDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCB-SS-----STTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred CCccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEeccc-CC-----CcccccCceEEEEEcCCCeEEEEcCCC
Confidence 46799999999996 678999999999999999999988877641 11 12367889999995458999999975
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
+++|+++|.++..+.++ +.+ .+..|++|+++++|+|||+|.++++|
T Consensus 99 ~~~i~~~d~~g~~~~~~-~~~---------------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i 144 (286)
T 1q7f_A 99 THQIQIYNQYGQFVRKF-GAT---------------------------------ILQHPRGVTVDNKGRIIVVECKVMRV 144 (286)
T ss_dssp GCEEEEECTTSCEEEEE-CTT---------------------------------TCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCEEEEECCCCcEEEEe-cCc---------------------------------cCCCceEEEEeCCCCEEEEECCCCEE
Confidence 89999999776666555 111 14579999999999999999999999
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
++|+.++..+.++ ...+ ....+.+.+++. +++|||+|..++
T Consensus 145 ~~~~~~g~~~~~~-~~~~-------------------------------------~~~~p~~i~~~~-~g~l~v~~~~~~ 185 (286)
T 1q7f_A 145 IIFDQNGNVLHKF-GCSK-------------------------------------HLEFPNGVVVND-KQEIFISDNRAH 185 (286)
T ss_dssp EEECTTSCEEEEE-ECTT-------------------------------------TCSSEEEEEECS-SSEEEEEEGGGT
T ss_pred EEEcCCCCEEEEe-CCCC-------------------------------------ccCCcEEEEECC-CCCEEEEECCCC
Confidence 9999865444332 1000 001123344433 578999999999
Q ss_pred EEEEEECCCCcEEEEeeccccccCCCceeec-ccccee
Q 004302 500 RIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVY 536 (762)
Q Consensus 500 RIrkidl~~~~~sti~~s~~G~lG~p~~~~~-pl~~v~ 536 (762)
+|++++.++..+.++. ..|.+..|..+.. |-++++
T Consensus 186 ~i~~~~~~g~~~~~~~--~~g~~~~p~~i~~d~~G~l~ 221 (286)
T 1q7f_A 186 CVKVFNYEGQYLRQIG--GEGITNYPIGVGINSNGEIL 221 (286)
T ss_dssp EEEEEETTCCEEEEES--CTTTSCSEEEEEECTTCCEE
T ss_pred EEEEEcCCCCEEEEEc--cCCccCCCcEEEECCCCCEE
Confidence 9999999887776653 2333445555444 333433
No 121
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=99.69 E-value=6.3e-18 Score=158.17 Aligned_cols=110 Identities=10% Similarity=-0.038 Sum_probs=93.6
Q ss_pred CCc-eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCC
Q 004302 88 GPH-HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 88 g~~-~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~ 163 (762)
.|+ |.+.+.+|+.+++++++||+|||+|||+||++| ++++|.|++++++|+ +++|++|+.+. +
T Consensus 7 ~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C-------~~~~~~l~~l~~~~~~~~~~~vv~v~~d~------~ 73 (144)
T 1i5g_A 7 FPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPS-------RAFTPQLIDFYKAHAEKKNFEVMLISWDE------S 73 (144)
T ss_dssp CSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTTTEEEEEEECCS------S
T ss_pred CCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhccCCCEEEEEEeCCC------C
Confidence 455 888899999999999999999999999999876 999999999999998 39999999986 6
Q ss_pred HHHHHHHHHhcCC-Ccceee-CCCCccccccCc---e-EEEEc-CCCCEEEEec
Q 004302 164 QTRLVEMLMKEYI-TFPILL-SNKNFPQMENGA---C-YLLSK-DFGNARVFHE 210 (762)
Q Consensus 164 ~~~v~~f~~k~~i-tfPVl~-D~~~~~~~~ygv---~-t~lId-~~G~iv~~~~ 210 (762)
.+.+++|++++++ +||++. |....+.+.|++ | ++||| ++|+++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 74 AEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCH
T ss_pred HHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccc
Confidence 8899999999886 788775 434456666764 5 59999 9999998653
No 122
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=99.69 E-value=2.8e-17 Score=167.84 Aligned_cols=150 Identities=8% Similarity=0.056 Sum_probs=114.4
Q ss_pred CCCCceeeccc--CCCccccCCCCCC--EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 86 FQGPHHLWFNI--VEDNIHFFKRGGA--FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 86 l~g~~~~w~n~--~g~~v~Lsd~rGK--~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
-+.|+|+..+. +| .++|++++|| +||++|||+||++| ..|||.|.+++++|++ ++||||+.+.
T Consensus 7 ~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C-------~~el~~l~~l~~~f~~~~v~vi~vS~D~--- 75 (220)
T 1xcc_A 7 ATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVC-------TTELAELGKMHEDFLKLNCKLIGFSCNS--- 75 (220)
T ss_dssp CBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHH-------HHHHHHHHHTHHHHHTTTEEEEEEESSC---
T ss_pred CCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHcCCEEEEEeCCC---
Confidence 35677888888 88 8999999998 56666799999876 9999999999999975 9999999874
Q ss_pred CcCCHHHHHHHHH-------hcCCCcceeeCCCCccccccCc---------------e-EEEEcCCCCEEEEecCC----
Q 004302 160 SAVDQTRLVEMLM-------KEYITFPILLSNKNFPQMENGA---------------C-YLLSKDFGNARVFHENS---- 212 (762)
Q Consensus 160 ~e~~~~~v~~f~~-------k~~itfPVl~D~~~~~~~~ygv---------------~-t~lId~~G~iv~~~~G~---- 212 (762)
...+.+|++ +++++||++.|.+..+.++||+ | +||||++|+|+..+.+.
T Consensus 76 ----~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g 151 (220)
T 1xcc_A 76 ----KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTG 151 (220)
T ss_dssp ----HHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBC
T ss_pred ----HHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCC
Confidence 455666665 5899999999988877777775 3 59999999999987653
Q ss_pred cCHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhhhccCCC
Q 004302 213 LDIGMLNKAVEELIMQQQENSSSPSGLKCTWAKQAEVLKEPH 254 (762)
Q Consensus 213 ~~~~~L~~~l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 254 (762)
.+.+++.+.|+.|+..... --.-+.-|..-++++.-|.
T Consensus 152 ~~~~ell~~i~~lq~~~~~----~~~~p~~w~~g~~~~~~p~ 189 (220)
T 1xcc_A 152 RNAHEILRVLKSLQLTYTT----PVATPVNWNEGDKCCVIPT 189 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHS----SEEBCTTCCTTSCEEECTT
T ss_pred CCHHHHHHHHHHHHhhhcC----CcccCCCcCcCCceEeCCC
Confidence 3578888899888765321 1112233555555555443
No 123
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=99.68 E-value=3.3e-17 Score=169.05 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=108.9
Q ss_pred CCCCceeecccCCCccccCCCCCC-EEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCc
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGA-FLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISA 161 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK-~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e 161 (762)
-+.|+|+..+.+| .++|++++|| +|||+|| |+||++| ..|||.|.+++++|++ ++||||+.+.
T Consensus 7 ~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC-------~~el~~l~~l~~ef~~~~v~vigIS~D~----- 73 (233)
T 2v2g_A 7 EVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVS-------TTELGRVIQLEGDFKKRGVKLIALSCDN----- 73 (233)
T ss_dssp CBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHH-------HHHHHHHHHTHHHHHHTTEEEEEEESSC-----
T ss_pred CCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCc-------HHHHHHHHHHHHHHHHcCCEEEEEcCCC-----
Confidence 3577888999999 8999999998 9999999 9999877 9999999999999964 9999999874
Q ss_pred CCHHHHHHHHH------hc--CCCcceeeCCCCccccccCc---------------e-EEEEcCCCCEEEEecCCc----
Q 004302 162 VDQTRLVEMLM------KE--YITFPILLSNKNFPQMENGA---------------C-YLLSKDFGNARVFHENSL---- 213 (762)
Q Consensus 162 ~~~~~v~~f~~------k~--~itfPVl~D~~~~~~~~ygv---------------~-t~lId~~G~iv~~~~G~~---- 213 (762)
...+++|++ ++ +++||++.|.+..+.++||+ | +||||++|+|+....+..
T Consensus 74 --~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr 151 (233)
T 2v2g_A 74 --VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGR 151 (233)
T ss_dssp --HHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred --HHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCC
Confidence 567788887 57 89999999988877777765 3 599999999999876543
Q ss_pred CHHHHHHHHHHHHHh
Q 004302 214 DIGMLNKAVEELIMQ 228 (762)
Q Consensus 214 ~~~~L~~~l~~ll~~ 228 (762)
+.+++.+.|+.|+..
T Consensus 152 ~~~eilr~l~~Lq~~ 166 (233)
T 2v2g_A 152 NFSEILRVIDSLQLT 166 (233)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 467888888887764
No 124
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.67 E-value=5.4e-15 Score=172.58 Aligned_cols=212 Identities=11% Similarity=0.009 Sum_probs=153.5
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEE-EEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKIL-DCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~-~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
..+..|.+|++|+.+++||++|..+++|++++.+|... .++-...+ ....+..|.|||+|..+++||++|+++
T Consensus 337 ~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~------~~~~~~~p~glAvD~~~~nLY~td~~~ 410 (628)
T 4a0p_A 337 HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVP------SQNLEIQPYDLSIDIYSRYIYWTCEAT 410 (628)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------CCCEEEEEEETTTTEEEEEETTT
T ss_pred hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccc------cccccCCcceEEeeccCCeEEEEcCCC
Confidence 46788999999998999999999999999999988532 33321100 012477899999998889999999999
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCC--
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFE-- 417 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~-- 417 (762)
++|.++++++....++... .|..|++|++++ +|.||++|.+++
T Consensus 411 ~~I~v~~~~G~~~~~l~~~----------------------------------~l~~Pr~iavdp~~g~ly~tD~g~~~~ 456 (628)
T 4a0p_A 411 NVINVTRLDGRSVGVVLKG----------------------------------EQDRPRAVVVNPEKGYMYFTNLQERSP 456 (628)
T ss_dssp TEEEEEETTSCEEEEEEEC----------------------------------TTCCEEEEEEETTTTEEEEEEEETTEE
T ss_pred CEEEEEECCCCeEEEEEeC----------------------------------CCCceeeEEEecCCCeEEEeecCCCCC
Confidence 9999999987766666321 156799999998 799999999988
Q ss_pred EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 418 TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 418 rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
+|+++++++.....++... ...|.+.+++...+.||++|+.
T Consensus 457 ~I~r~~~dG~~~~~l~~~~---------------------------------------l~~P~gla~D~~~~~LYw~D~~ 497 (628)
T 4a0p_A 457 KIERAALDGTEREVLFFSG---------------------------------------LSKPIALALDSRLGKLFWADSD 497 (628)
T ss_dssp EEEEEETTSCSCEEEECSS---------------------------------------CSCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEeCCCCCcEEEEecc---------------------------------------CCCccEEEEeCCCCEEEEEeCC
Confidence 7999999876555443110 0122457777778899999999
Q ss_pred CCEEEEEECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCce
Q 004302 498 GQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRI 560 (762)
Q Consensus 498 NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~ 560 (762)
+++|.+++++|....++.. +.+..|+.+..--+.+|... ...+.+.+++...|.-
T Consensus 498 ~~~I~~~~~dG~~r~~~~~---~~~~~P~glav~~~~ly~tD-----~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 498 LRRIESSDLSGANRIVLED---SNILQPVGLTVFENWLYWID-----KQQQMIEKIDMTGREG 552 (628)
T ss_dssp TTEEEEEETTSCSCEEEEC---SSCSCEEEEEEETTEEEEEE-----TTTTEEEEEETTSSSC
T ss_pred CCEEEEEeCCCCceEEEEc---CCCCCcEEEEEECCEEEEEE-----CCCCeEEEEECcCCCC
Confidence 9999999999988777643 23445555444334555433 2345566667666654
No 125
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=5.1e-15 Score=151.59 Aligned_cols=170 Identities=12% Similarity=0.241 Sum_probs=131.4
Q ss_pred cccCCcceEEEccCCCEEEEEeCC-CcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 262 LLLHFPGCISADESGNRLFLSDSN-HHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~-nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
..+..|.+|+++..+++|||++.. +++|++++.+|+++..++.+ .+..|.+|++++ +++|||+|..+
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~-----------~~~~~~~i~~~~-~g~l~v~~~~~ 141 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGAT-----------ILQHPRGVTVDN-KGRIIVVECKV 141 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTT-----------TCSCEEEEEECT-TSCEEEEETTT
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCc-----------cCCCceEEEEeC-CCCEEEEECCC
Confidence 467899999995468999999975 89999999999988777542 356799999997 67899999999
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLW 420 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~ 420 (762)
++|+++|.++..+.++... ..+..|.+|+++++|+|||+|..+++|+
T Consensus 142 ~~i~~~~~~g~~~~~~~~~---------------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 188 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCS---------------------------------KHLEFPNGVVVNDKQEIFISDNRAHCVK 188 (286)
T ss_dssp TEEEEECTTSCEEEEEECT---------------------------------TTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred CEEEEEcCCCCEEEEeCCC---------------------------------CccCCcEEEEECCCCCEEEEECCCCEEE
Confidence 9999999877766665211 1255799999999999999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC-
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ- 499 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh- 499 (762)
+|+.++..+.++ .+.+ ....+.+.+++ .+|+|||+|..++
T Consensus 189 ~~~~~g~~~~~~-~~~g-------------------------------------~~~~p~~i~~d-~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 189 VFNYEGQYLRQI-GGEG-------------------------------------ITNYPIGVGIN-SNGEILIADNHNNF 229 (286)
T ss_dssp EEETTCCEEEEE-SCTT-------------------------------------TSCSEEEEEEC-TTCCEEEEECSSSC
T ss_pred EEcCCCCEEEEE-ccCC-------------------------------------ccCCCcEEEEC-CCCCEEEEeCCCCE
Confidence 999876554433 1111 00112334444 3579999999986
Q ss_pred EEEEEECCCCcEEEEe
Q 004302 500 RIMRLNRESGVCSNFQ 515 (762)
Q Consensus 500 RIrkidl~~~~~sti~ 515 (762)
+|++++.++..+.++.
T Consensus 230 ~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 230 NLTIFTQDGQLISALE 245 (286)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEECCCCCEEEEEc
Confidence 9999999887776654
No 126
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=99.67 E-value=1.8e-17 Score=155.65 Aligned_cols=109 Identities=7% Similarity=-0.067 Sum_probs=92.8
Q ss_pred CCc-eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCC
Q 004302 88 GPH-HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 88 g~~-~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~ 163 (762)
.|+ |.+.|.+| .+++++++||+|||+|||+||++| +.++|.|++++++|+ +++|++|+.+. +
T Consensus 8 ~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C-------~~~~p~l~~l~~~~~~~~~~~vv~v~~d~------~ 73 (146)
T 1o8x_A 8 LPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPA-------RGFTPQLIEFYDKFHESKNFEVVFCTWDE------E 73 (146)
T ss_dssp STTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTTTEEEEEEECCC------S
T ss_pred CCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHH-------HHHHHHHHHHHHHhhhcCCeEEEEEeCCC------C
Confidence 455 88999999 999999999999999999999876 999999999999998 39999999986 6
Q ss_pred HHHHHHHHHhcCC-Ccceee-CCCCccccccCc---e-EEEEc-CCCCEEEEec
Q 004302 164 QTRLVEMLMKEYI-TFPILL-SNKNFPQMENGA---C-YLLSK-DFGNARVFHE 210 (762)
Q Consensus 164 ~~~v~~f~~k~~i-tfPVl~-D~~~~~~~~ygv---~-t~lId-~~G~iv~~~~ 210 (762)
.+.+++|++++++ +||++. |....+.+.|++ | ++||| ++|+++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~ 127 (146)
T 1o8x_A 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRA 127 (146)
T ss_dssp HHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCH
T ss_pred HHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecc
Confidence 8899999999885 778775 434456666765 5 59999 9999998753
No 127
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=99.48 E-value=5.1e-18 Score=157.51 Aligned_cols=108 Identities=5% Similarity=-0.081 Sum_probs=90.7
Q ss_pred CceeecccCCCccccCC-CCCC-EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC----CCeEEEEEEcCCCccCcC
Q 004302 89 PHHLWFNIVEDNIHFFK-RGGA-FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF----PQLQVIGFLHGCSTISAV 162 (762)
Q Consensus 89 ~~~~w~n~~g~~v~Lsd-~rGK-~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y----~~v~VvgV~~~~~~~~e~ 162 (762)
|+|.+.+.+|+.++|++ ++|| +|||+|||+||++| +.++|.|++++++| ++++|++|+.++
T Consensus 5 p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~------ 71 (143)
T 2lus_A 5 QGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPC-------RGFTPILADMYSELVDDSAPFEIIFVSSDR------ 71 (143)
Confidence 55777788888999999 9999 99999999999866 99999999999999 349999999886
Q ss_pred CHHHHHHHHHhcCCCccee---eCCCCccccccCc---e-EEEEcCCCCEEEEe
Q 004302 163 DQTRLVEMLMKEYITFPIL---LSNKNFPQMENGA---C-YLLSKDFGNARVFH 209 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl---~D~~~~~~~~ygv---~-t~lId~~G~iv~~~ 209 (762)
+.+.+++|+++++++||.+ .|....+...|++ | ++|||++|+++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 72 SEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMN 125 (143)
Confidence 5678999999999997644 3444456677765 4 59999999999875
No 128
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=99.65 E-value=1.5e-17 Score=161.12 Aligned_cols=109 Identities=6% Similarity=-0.106 Sum_probs=90.9
Q ss_pred Cce-eecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEEcCCCccCcCCH
Q 004302 89 PHH-LWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 89 ~~~-~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~~~~~~~~e~~~ 164 (762)
|++ .+.+.+| .++|++++||+|||+|||+||+|| ++++|.|++++++|++ ++||+|+++. +.
T Consensus 29 P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C-------~~~~p~l~~l~~~~~~~~~v~vv~v~~d~------~~ 94 (165)
T 3s9f_A 29 GEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPC-------RGFTPQLVEFYEKHHDSKNFEIILASWDE------EE 94 (165)
T ss_dssp HHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTTTEEEEEEECCC------SH
T ss_pred CcceeeecCCC-cccHHHcCCCEEEEEEECCcChhH-------HHHHHHHHHHHHHhccCCCeEEEEEecCC------CH
Confidence 445 6778888 999999999999999999999877 9999999999999974 9999999986 77
Q ss_pred HHHHHHHHhcCC-CcceeeCCC-CccccccCc---e-EEEEcCC-CCEEEEecC
Q 004302 165 TRLVEMLMKEYI-TFPILLSNK-NFPQMENGA---C-YLLSKDF-GNARVFHEN 211 (762)
Q Consensus 165 ~~v~~f~~k~~i-tfPVl~D~~-~~~~~~ygv---~-t~lId~~-G~iv~~~~G 211 (762)
+.+++|++++++ .+|++.+.. ..+.+.|++ | +||||++ |+++.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~ 148 (165)
T 3s9f_A 95 DDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRAR 148 (165)
T ss_dssp HHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHH
T ss_pred HHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccH
Confidence 899999999875 567766543 455666765 5 5999998 999987544
No 129
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=99.64 E-value=2.9e-17 Score=153.18 Aligned_cols=109 Identities=9% Similarity=-0.081 Sum_probs=90.5
Q ss_pred CCce-eecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCC
Q 004302 88 GPHH-LWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 88 g~~~-~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~ 163 (762)
.|++ .+.|.+| .+++++++||+|||+|||+||++| +.++|.|++++++|+ +++|++|+.+. +
T Consensus 8 ~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C-------~~~~~~l~~l~~~~~~~~~~~vv~i~~d~------~ 73 (144)
T 1o73_A 8 LPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPC-------RGFTPVLAEFYEKHHVAKNFEVVLISWDE------N 73 (144)
T ss_dssp SCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTTTEEEEEEECCS------S
T ss_pred CccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHH-------HHHHHHHHHHHHHhccCCCEEEEEEeCCC------C
Confidence 4565 8889999 999999999999999999999876 999999999999998 39999999986 6
Q ss_pred HHHHHHHHHhcCC-Ccceee-CCCCccccccCc---e-EEEEc-CCCCEEEEec
Q 004302 164 QTRLVEMLMKEYI-TFPILL-SNKNFPQMENGA---C-YLLSK-DFGNARVFHE 210 (762)
Q Consensus 164 ~~~v~~f~~k~~i-tfPVl~-D~~~~~~~~ygv---~-t~lId-~~G~iv~~~~ 210 (762)
.+.+++|+++++. ++|+.. |....+.+.|++ | ++||| ++|+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCH
T ss_pred HHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecch
Confidence 7889999999874 567664 333445566654 5 59999 8999998753
No 130
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=99.64 E-value=6.1e-16 Score=166.85 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=104.7
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~ 166 (762)
.|+|++.|.+|++++|+||+||+|||+|| +.||+ +| ..|++.|.+ ..|.+++||||+.| +...
T Consensus 4 ~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp-----~C--~~e~~~~~~--~~~~~~~v~gis~D-------~~~~ 67 (322)
T 4eo3_A 4 VKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTS-----GS--TREAVEFSR--ENFEKAQVVGISRD-------SVEA 67 (322)
T ss_dssp CCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSH-----HH--HHHHHHHHH--SCCTTEEEEEEESC-------CHHH
T ss_pred CCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCC-----CC--HHHHHHHHH--HhhCCCEEEEEeCC-------CHHH
Confidence 68899999999999999999999999999 45665 45 999998865 34556999999976 4788
Q ss_pred HHHHHHhcCCCcceeeCCCCccccccCce--------EEEEcCCCCEEEEecCC---cCHHHHHHHHHHHHHh
Q 004302 167 LVEMLMKEYITFPILLSNKNFPQMENGAC--------YLLSKDFGNARVFHENS---LDIGMLNKAVEELIMQ 228 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D~~~~~~~~ygv~--------t~lId~~G~iv~~~~G~---~~~~~L~~~l~~ll~~ 228 (762)
+++|.++++++||+|.|.++.+.++||+- |||||++|+|+....+. .+.+++.+.|++++.+
T Consensus 68 ~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~ 140 (322)
T 4eo3_A 68 LKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEE 140 (322)
T ss_dssp HHHHHHHHTCCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchh
Confidence 99999999999999999999999999872 69999999999765443 3466777778877654
No 131
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.63 E-value=8.5e-16 Score=181.35 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=126.2
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN- 340 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N- 340 (762)
..|..|.|||||..+++||++|..+++|.+++.+|.....+.. ..+..|.||++++.++.||++|+++
T Consensus 450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-----------~~~~~P~giavDp~~g~ly~td~~~~ 518 (699)
T 1n7d_A 450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------EQGSKPRAIVVDPVHGFMYWTDWGTP 518 (699)
T ss_dssp SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-----------CSSCCCCCEECCSSSSCCEECCCSSS
T ss_pred CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-----------CCCCCcceEEEccCCCcEEEcccCCC
Confidence 3578899999998789999999999999999999876665533 1357799999999889999999886
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI 419 (762)
++|.++++++....+++ ...|.+|.||+++++ +.|||+|+++++|
T Consensus 519 ~~I~~~~~dG~~~~~l~----------------------------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLV----------------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEBCCSSSCCCCEES----------------------------------CSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CeEEEEeCCCCCeeEEE----------------------------------eCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 89999987654333331 012678999999975 8999999999999
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
+++++++....+++...+ ....| .+++.+++.||++|..++
T Consensus 565 ~~~d~dG~~~~~~~~~~~----------------------------------~~~~P-----~glavd~~~lywtd~~~~ 605 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEK----------------------------------RLAHP-----FSLAVFEDKVFWTDIINE 605 (699)
T ss_dssp EEECSSSSCCEEECCCSS----------------------------------SCSSC-----CCCEEETTEEEEECSTTT
T ss_pred EEEccCCCceEEEEecCC----------------------------------cCCCc-----eEeEEECCEEEEEeCCCC
Confidence 999998655544421100 00123 333445679999999999
Q ss_pred EEEEEECCCCcEE
Q 004302 500 RIMRLNRESGVCS 512 (762)
Q Consensus 500 RIrkidl~~~~~s 512 (762)
+|++++..+|...
T Consensus 606 ~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 606 AIFSANRLTGSDV 618 (699)
T ss_dssp CEEEEETTTEEEE
T ss_pred eEEEEEccCCCce
Confidence 9999998766543
No 132
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=99.62 E-value=3.7e-16 Score=162.96 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=106.3
Q ss_pred CCCCceeecccCCCcccc-CCC--CCCEE-EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCcc
Q 004302 86 FQGPHHLWFNIVEDNIHF-FKR--GGAFL-VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTI 159 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~L-sd~--rGK~V-vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~ 159 (762)
-+.|+|+..+.+| +++| +++ +||++ |++|||+||++| ..|||.|.+++++|+ +++||+|+++.
T Consensus 9 ~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC-------~tEl~~l~~l~~ef~~~gv~VI~VS~Ds--- 77 (249)
T 3a2v_A 9 ERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVC-------TTEFVSFARRYEDFQRLGVDLIGLSVDS--- 77 (249)
T ss_dssp SBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHH-------HHHHHHHHHTHHHHHHTTEEEEEEESSC---
T ss_pred CCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcCh-------HHHHHHHHHHHHHHHhCCcEEEEEECCC---
Confidence 3577888888888 7999 999 99975 569999999877 999999999999997 49999999874
Q ss_pred CcCCHHHHHHHHHh------cCCCcceeeCCCCccccccCc----------e-EEEEcCCCCEEEEecCCc----CHHHH
Q 004302 160 SAVDQTRLVEMLMK------EYITFPILLSNKNFPQMENGA----------C-YLLSKDFGNARVFHENSL----DIGML 218 (762)
Q Consensus 160 ~e~~~~~v~~f~~k------~~itfPVl~D~~~~~~~~ygv----------~-t~lId~~G~iv~~~~G~~----~~~~L 218 (762)
.....+|++. .+++||++.|.+..+.+.||+ | +||||++|+++....|.. +.++|
T Consensus 78 ----~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~El 153 (249)
T 3a2v_A 78 ----VFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEI 153 (249)
T ss_dssp ----HHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ----HHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHH
Confidence 4455556553 589999999988877777765 3 699999999999988765 57889
Q ss_pred HHHHHHHHHh
Q 004302 219 NKAVEELIMQ 228 (762)
Q Consensus 219 ~~~l~~ll~~ 228 (762)
.+.|+.++..
T Consensus 154 lr~I~alq~~ 163 (249)
T 3a2v_A 154 LRIVKALKLG 163 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 133
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.8e-15 Score=152.10 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=106.3
Q ss_pred CCCCceee---cccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 86 FQGPHHLW---FNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 86 l~g~~~~w---~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
-++|+|+. .|.++++++|+||+||+|||.|| +.||+.| ..|++.|.+++++|.+ ++||||+.|.
T Consensus 27 ~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvC-------t~E~~~f~~~~~~f~~~g~~vigiS~Ds--- 96 (216)
T 3sbc_A 27 KQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVS-------PTEIIAFSEAAKKFEEQGAQVLFASTDS--- 96 (216)
T ss_dssp SBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHH-------HHHHHHHHHHHHHHHHTTEEEEEEESSC---
T ss_pred CcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcC-------chhhhHHHHhHHhhccCCceEEEeecCc---
Confidence 35666654 47778899999999999999999 9999866 9999999999999974 9999999874
Q ss_pred CcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCC----cCHHHH
Q 004302 160 SAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENS----LDIGML 218 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~----~~~~~L 218 (762)
.....+|.++. +++||++.|.+..+.++||+- +||||++|+|++....+ -+.+++
T Consensus 97 ----~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEi 172 (216)
T 3sbc_A 97 ----EYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEA 172 (216)
T ss_dssp ----HHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ----hhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHH
Confidence 77888888764 589999999999999998862 69999999999865332 256777
Q ss_pred HHHHHHHHHh
Q 004302 219 NKAVEELIMQ 228 (762)
Q Consensus 219 ~~~l~~ll~~ 228 (762)
.+.|+.|+--
T Consensus 173 Lr~l~AlQ~~ 182 (216)
T 3sbc_A 173 LRLVEAFQWT 182 (216)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhH
Confidence 7788877643
No 134
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.56 E-value=4.6e-13 Score=140.66 Aligned_cols=164 Identities=11% Similarity=0.120 Sum_probs=119.7
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC--e
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH--A 342 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh--r 342 (762)
.+|.++++++ +++|||+|..+++|+++|.+|++...+..+ ..|.||++++ +++|||+|.+++ +
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~-------------~~p~gia~~~-dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVE-------------GKVSGLAFTS-NGDLVATGWNADSIP 96 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEECS-------------SEEEEEEECT-TSCEEEEEECTTSCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceEEEEeCC-------------CCceeEEEcC-CCcEEEEeccCCcce
Confidence 7899999996 678999999999999999999887766432 2499999997 677999998764 5
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|.+++..++.+.+++... ....|.|+++..++.+||+|..+++|+++
T Consensus 97 v~~~d~~~g~~~~~~~~~---------------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~ 143 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLP---------------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLI 143 (306)
T ss_dssp EEEEECTTSCEEEEEECT---------------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCeEEEEEeCC---------------------------------CccccCcccccCCCcEEEEECCCCeEEEE
Confidence 889988888887775431 02357888888788999999999999999
Q ss_pred ECCCCcEEEE-EcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEE
Q 004302 423 DLASGEIKEA-VKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRI 501 (762)
Q Consensus 423 d~~~g~I~ti-~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRI 501 (762)
|..++..... ..+.. . + .........+. +++.+++.|||+|+.+++|
T Consensus 144 d~~~~~~~v~~~~~~~-------~------------~-----------~~~~~~~~~pn--gis~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPML-------A------------R-----------SNSESVFPAAN--GLKRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp ETTTTEEEEEEECGGG-------S------------C-----------SSTTCCSCSEE--EEEEETTEEEEEETTTTEE
T ss_pred eCCCCcEeEEEECCcc-------c------------c-----------ccccCCCCcCC--CcCcCCCEEEEEeCCCCEE
Confidence 9876532111 01110 0 0 00000011122 3356678999999999999
Q ss_pred EEEECCC
Q 004302 502 MRLNRES 508 (762)
Q Consensus 502 rkidl~~ 508 (762)
.+|+.++
T Consensus 192 ~~~~~~~ 198 (306)
T 2p4o_A 192 LRIPVDS 198 (306)
T ss_dssp EEEEBCT
T ss_pred EEEEeCC
Confidence 9999985
No 135
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.56 E-value=5.4e-14 Score=148.22 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=125.5
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCC-CC---CCCC---cccccccCCcceEEEecCCCeE
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSC-PG---FEDG---EFESSKLMRPAASFYHKDDDCL 333 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG-~G---~~DG---~~~~a~fn~P~GIavd~~~g~L 333 (762)
++|..|.+|++|+ ++++|.+|..+++|++++.++ ++..+.... .. ..+| ......+..|.||++++++++|
T Consensus 16 g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 16 APSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp CSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 4689999999996 577555688899999999876 555443221 00 0011 1112356789999999647899
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEE
Q 004302 334 YIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLII 412 (762)
Q Consensus 334 YVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVA 412 (762)
||+|.. +.|+++|+.++.+++++... . ...++.|.+|++++ +|+|||+
T Consensus 95 ~v~d~~-~~i~~~d~~~g~~~~~~~~~----------------~--------------~~~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 95 YIVDCY-YHLSVVGSEGGHATQLATSV----------------D--------------GVPFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp EEEETT-TEEEEECTTCEECEEEESEE----------------T--------------TEECSCEEEEEECTTTCCEEEE
T ss_pred EEEECC-CCEEEEeCCCCEEEEecccC----------------C--------------CCcccccceEEEecCCCEEEEE
Confidence 999986 56999998888777774321 0 12367899999999 9999999
Q ss_pred ECCC-----------------CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCC
Q 004302 413 NRSF-----------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL 475 (762)
Q Consensus 413 D~gN-----------------~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~ 475 (762)
|.++ ++|+++|.+++.+..+..+. ..
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------------------------------------~~ 186 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL-------------------------------------HV 186 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE-------------------------------------SC
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC-------------------------------------cc
Confidence 9864 67999998877665432100 11
Q ss_pred CCcceeeeEEecCCEEEEEECCCCEEEEEECCCC
Q 004302 476 PYAGLISSSIAFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 476 p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
| .+++++..++.|||+|+.+++|.++++++.
T Consensus 187 p---~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 187 P---GGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp C---CEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred C---cceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 2 345666666689999999999999999864
No 136
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.1e-13 Score=139.72 Aligned_cols=163 Identities=12% Similarity=0.157 Sum_probs=119.5
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.+|++++ +++|||++. +++|+++|.+|.....+.. ..+..|.+|++++ +++|||+|..+++
T Consensus 65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~-----------~~~~~p~~i~~~~-~g~l~v~~~~~~~ 130 (270)
T 1rwi_B 65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPF-----------DGLNYPEGLAVDT-QGAVYVADRGNNR 130 (270)
T ss_dssp SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCC-----------CSCSSEEEEEECT-TCCEEEEEGGGTE
T ss_pred CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeec-----------CCcCCCcceEECC-CCCEEEEECCCCE
Confidence 467899999996 677999999 8999999998865554432 1356799999997 6789999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|.+++..+...... ....+..|.+|+++++|+|||+|.++++|++|
T Consensus 131 i~~~~~~~~~~~~~----------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 131 VVKLAAGSKTQTVL----------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp EEEECTTCCSCEEC----------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred EEEEECCCceeEee----------------------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 99997533221110 01125689999999999999999999999999
Q ss_pred ECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEE
Q 004302 423 DLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIM 502 (762)
Q Consensus 423 d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIr 502 (762)
+.+++.+.... .. .. ..+.+.+++ .+|+|||++..+++|.
T Consensus 177 ~~~~~~~~~~~--~~------------------------------------~~-~~p~~i~~d-~~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 177 EAESNNQVVLP--FT------------------------------------DI-TAPWGIAVD-EAGTVYVTEHNTNQVV 216 (270)
T ss_dssp CTTTCCEEECC--CS------------------------------------SC-CSEEEEEEC-TTCCEEEEETTTSCEE
T ss_pred ecCCCceEeec--cc------------------------------------CC-CCceEEEEC-CCCCEEEEECCCCcEE
Confidence 98876543210 00 00 111234443 3469999999999999
Q ss_pred EEECCCCcEEE
Q 004302 503 RLNRESGVCSN 513 (762)
Q Consensus 503 kidl~~~~~st 513 (762)
+++.++.....
T Consensus 217 ~~~~~~~~~~~ 227 (270)
T 1rwi_B 217 KLLAGSTTSTV 227 (270)
T ss_dssp EECTTCSCCEE
T ss_pred EEcCCCCccee
Confidence 99998876544
No 137
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.9e-13 Score=137.92 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=117.4
Q ss_pred cCcccC-CcceEEEccCCCEEEE-EeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 260 RNLLLH-FPGCISADESGNRLFL-SDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 260 ~~~~L~-~P~gIAVD~s~g~LYV-ADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
....+. .|.+|++|+ +++||| +|..+++|++++.++.....+.. ..+..|.+|++++ +++|||+|
T Consensus 18 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~p~~i~~~~-~g~l~v~~ 84 (270)
T 1rwi_B 18 TGIDFRLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPF-----------NGLYQPQGLAVDG-AGTVYVTD 84 (270)
T ss_dssp CSCSSCCCEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCC-----------CSCCSCCCEEECT-TCCEEEEE
T ss_pred ccccccCCccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEee-----------CCcCCcceeEECC-CCCEEEEc
Confidence 334455 999999996 678999 99999999999986654443321 1356799999997 67799999
Q ss_pred CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCC
Q 004302 338 SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE 417 (762)
Q Consensus 338 t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~ 417 (762)
. +++|+++|..++.+..+.. ..+..|++|+++++|+|||+|.+++
T Consensus 85 ~-~~~i~~~d~~~~~~~~~~~----------------------------------~~~~~p~~i~~~~~g~l~v~~~~~~ 129 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTVLPF----------------------------------DGLNYPEGLAVDTQGAVYVADRGNN 129 (270)
T ss_dssp T-TTEEEEECTTCSCCEECCC----------------------------------CSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred C-CCEEEEEeCCCceEeeeec----------------------------------CCcCCCcceEECCCCCEEEEECCCC
Confidence 9 8999999987665433310 1145799999999999999999999
Q ss_pred EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 418 TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 418 rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
+|++++..+...... ... . ...| .+.+++. +++|||+|..
T Consensus 130 ~i~~~~~~~~~~~~~--~~~-------~---------------------------~~~p---~~i~~~~-~g~l~v~~~~ 169 (270)
T 1rwi_B 130 RVVKLAAGSKTQTVL--PFT-------G---------------------------LNDP---DGVAVDN-SGNVYVTDTD 169 (270)
T ss_dssp EEEEECTTCCSCEEC--CCC-------S---------------------------CCSC---CCEEECT-TCCEEEEEGG
T ss_pred EEEEEECCCceeEee--ccc-------c---------------------------CCCc---eeEEEeC-CCCEEEEECC
Confidence 999997654332110 000 0 0112 2344443 5679999999
Q ss_pred CCEEEEEECCCCcEEE
Q 004302 498 GQRIMRLNRESGVCSN 513 (762)
Q Consensus 498 NhRIrkidl~~~~~st 513 (762)
+++|.+++.+++....
T Consensus 170 ~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVV 185 (270)
T ss_dssp GTEEEEECTTTCCEEE
T ss_pred CCEEEEEecCCCceEe
Confidence 9999999999877654
No 138
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=99.54 E-value=1.6e-14 Score=147.73 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=107.9
Q ss_pred CCCCcee----ecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCc
Q 004302 86 FQGPHHL----WFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCST 158 (762)
Q Consensus 86 l~g~~~~----w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~ 158 (762)
-++|+|+ +.|.+|++++|+||+||+|||.|| +.||+. | ..|+..|.+++++|.+ ++||||+.|.
T Consensus 30 ~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~Tpv-----C--t~E~~~f~~~~~eF~~~g~~vigiS~Ds-- 100 (219)
T 3tue_A 30 SPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-----C--PTEVIAFSDSVSRFNELNCEVLACSIDS-- 100 (219)
T ss_dssp SBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSS-----C--CHHHHHHHTTHHHHHTTTEEEEEEESSC--
T ss_pred CcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCC-----C--chhHhhHHHHHhhhccCCcEEEEeeCCc--
Confidence 3567776 557888899999999999999999 889975 5 9999999999999975 9999999874
Q ss_pred cCcCCHHHHHHHHHhc-------CCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCC----cCHHH
Q 004302 159 ISAVDQTRLVEMLMKE-------YITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENS----LDIGM 217 (762)
Q Consensus 159 ~~e~~~~~v~~f~~k~-------~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~----~~~~~ 217 (762)
.....+|.++. +++||++-|.+..+.++||+- +||||++|+|+...... -+.++
T Consensus 101 -----~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~E 175 (219)
T 3tue_A 101 -----EYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEE 175 (219)
T ss_dssp -----HHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred -----hhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHH
Confidence 78889998874 689999999999999998863 69999999999865322 25677
Q ss_pred HHHHHHHHHHhhccCCCCCCCccchhhhhhhhcc
Q 004302 218 LNKAVEELIMQQQENSSSPSGLKCTWAKQAEVLK 251 (762)
Q Consensus 218 L~~~l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~ 251 (762)
+.+.|+.|+--..-. -+-+.-|..-.++++
T Consensus 176 vLr~l~aLQ~~~~~~----~~~Pa~W~~G~~~i~ 205 (219)
T 3tue_A 176 VLRLLEAFQFVEKHG----EVCPANWKKGDPGMK 205 (219)
T ss_dssp HHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhhhHHhcC----CCcCCCCCCCCcccc
Confidence 777888776532111 122344655555554
No 139
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.54 E-value=4.3e-13 Score=141.32 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=122.1
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC--
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN-- 340 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N-- 340 (762)
.+..|.||++++.+++|||+|.. +.|+++|.++..+..+.... + ...++.|.+|++++.+++|||+|..+
T Consensus 78 ~~~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~---~----~~~~~~p~~i~~d~~~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 78 LCGRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATSV---D----GVPFKWLYAVTVDQRTGIVYFTDVSTLY 149 (322)
T ss_dssp HHCCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESEE---T----TEECSCEEEEEECTTTCCEEEEESCSSC
T ss_pred cCCCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEecccC---C----CCcccccceEEEecCCCEEEEECCcccc
Confidence 35679999999657999999987 45999999754333332210 1 13578899999996357999999764
Q ss_pred ---------------CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC
Q 004302 341 ---------------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE 405 (762)
Q Consensus 341 ---------------hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~ 405 (762)
++|.++|..++.+.++... +..|.||++++
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------------------------------~~~p~gia~~~ 194 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-----------------------------------LHVPGGAEVSA 194 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-----------------------------------ESCCCEEEECT
T ss_pred cccccceehcccCCCceEEEEeCCCCEEEEeccC-----------------------------------CccCcceEECC
Confidence 5799999877777665311 45799999999
Q ss_pred CCc-EEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeE
Q 004302 406 DDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSS 484 (762)
Q Consensus 406 dG~-LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav 484 (762)
+|. |||+|+.+++|++|+.++..+ +..+. +.. ..+ +.++++
T Consensus 195 dg~~lyv~d~~~~~I~~~~~~~~~~-----~~~~~---~~~--------------------------~~g----P~gi~~ 236 (322)
T 2fp8_A 195 DSSFVLVAEFLSHQIVKYWLEGPKK-----GTAEV---LVK--------------------------IPN----PGNIKR 236 (322)
T ss_dssp TSSEEEEEEGGGTEEEEEESSSTTT-----TCEEE---EEE--------------------------CSS----EEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcC-----Cccce---EEe--------------------------CCC----CCCeEE
Confidence 975 999999999999999875321 11100 000 001 234555
Q ss_pred EecCCEEEEEECC----------CCEEEEEECCCCcEEEEee
Q 004302 485 IAFQNHILLCDIV----------GQRIMRLNRESGVCSNFQF 516 (762)
Q Consensus 485 ~~~~g~LYVADt~----------NhRIrkidl~~~~~sti~~ 516 (762)
+ .+|+|||++.. +++|.+|+.++..+..+..
T Consensus 237 d-~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~ 277 (322)
T 2fp8_A 237 N-ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL 277 (322)
T ss_dssp C-TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC
T ss_pred C-CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC
Confidence 4 35689999987 6899999999877777654
No 140
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=3.7e-12 Score=135.25 Aligned_cols=215 Identities=11% Similarity=0.071 Sum_probs=141.2
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-CC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE-NH 341 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~-Nh 341 (762)
+..|.+|++++ ++++||++...++|.++|. ++++...+..+.+ ..++..|.+|+++ ++.|||++.+ ++
T Consensus 83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------~~~~~~p~~i~~~--~~~lyv~~~~~~~ 152 (328)
T 3dsm_A 83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------DMESGSTEQMVQY--GKYVYVNCWSYQN 152 (328)
T ss_dssp CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-------CTTTCBCCCEEEE--TTEEEEEECTTCC
T ss_pred CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-------cccCCCcceEEEE--CCEEEEEcCCCCC
Confidence 57899999975 5699999988999999998 5777766654321 1245679999994 7999999985 89
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCC-----
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSF----- 416 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN----- 416 (762)
+|.+||+.++.+......| ..|.+++++++|.+||++.++
T Consensus 153 ~v~viD~~t~~~~~~i~~g-----------------------------------~~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIG-----------------------------------IQPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp EEEEEETTTTEEEEEEECS-----------------------------------SCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EEEEEECCCCeEEEEEEcC-----------------------------------CCccceEEcCCCCEEEEECCCccCCc
Confidence 9999999887665433221 148899999999999999887
Q ss_pred -----CEEEEEECCCCcEEE-EEcCCc-eee--EEe--ceeh---hhhhhhhccCCccccccccCCcccccCCCCcceee
Q 004302 417 -----ETLWIMDLASGEIKE-AVKGFS-KVL--EIC--GVLV---MEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 482 (762)
Q Consensus 417 -----~rI~v~d~~~g~I~t-i~~G~g-~~~--~~~--G~~~---~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgs 482 (762)
++|++||++++++.. +-.+.+ .+. ... |... ...+..++........ ..........+.+.
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~-----~~~~~~~~~~p~gi 272 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPV-----RPFLEFRDTKYYGL 272 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCS-----SCSBCCCSSCEEEE
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCceee-----eeeecCCCCceEEE
Confidence 899999999887753 322211 111 111 1100 0011111110000000 00000001234566
Q ss_pred eEEecCCEEEEEE----CCCCEEEEEECCCCcEEEEeeccccccCCCceeecccc
Q 004302 483 SSIAFQNHILLCD----IVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLE 533 (762)
Q Consensus 483 av~~~~g~LYVAD----t~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~pl~ 533 (762)
++++.+++|||+| ..+++|.+|+.++..+.+|.. |. .|..+.+|++
T Consensus 273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~-G~----~P~~~~~~~~ 322 (328)
T 3dsm_A 273 TVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYV-GI----IPGAFCWKLE 322 (328)
T ss_dssp EECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEE-EE----SEEEEEEECC
T ss_pred EEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEe-cc----CcceEEEecc
Confidence 6766789999999 899999999999777777753 22 3566666643
No 141
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.8e-11 Score=122.80 Aligned_cols=164 Identities=11% Similarity=0.126 Sum_probs=120.9
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.+|++++ +++|||++.++++|.++|.+|++....... ....|.+|++++ ++.|||++..+++
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~-----------~~~~~~~i~~~~-~g~l~v~~~~~~~ 126 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQ-----------PDSGPYGITEGL-NGDIWFTQLNGDR 126 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSS-----------TTCCEEEEEECS-TTCEEEEETTTTE
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCCCCeEEecCCC-----------CCCCCccceECC-CCCEEEEccCCCe
Confidence 367899999994 788999999999999999998875443211 135699999996 7899999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|.++|.+ +.+..+... ..+..|.+|+++++|+|||++..+++|+++
T Consensus 127 i~~~~~~-g~~~~~~~~---------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 127 IGKLTAD-GTIYEYDLP---------------------------------NKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEECTT-SCEEEEECS---------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEECCC-CCEEEccCC---------------------------------CCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 9999987 555444210 013479999999999999999999999999
Q ss_pred ECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEE
Q 004302 423 DLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIM 502 (762)
Q Consensus 423 d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIr 502 (762)
+. ++.+..+..... ...| .+.+++ .+++|||++..+++|.
T Consensus 173 ~~-~g~~~~~~~~~~-----------------------------------~~~~---~~i~~d-~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTN-----------------------------------AAAP---VGITSG-NDGALWFVEIMGNKIG 212 (300)
T ss_dssp CT-TCCEEEEECSST-----------------------------------TCCE---EEEEEC-TTSSEEEEETTTTEEE
T ss_pred CC-CCcEEEeeCCCC-----------------------------------CCCc---ceEEEC-CCCCEEEEccCCCEEE
Confidence 98 555443311000 0111 223333 3679999999999999
Q ss_pred EEECCCCcEEEE
Q 004302 503 RLNRESGVCSNF 514 (762)
Q Consensus 503 kidl~~~~~sti 514 (762)
+++.+ +....+
T Consensus 213 ~~~~~-g~~~~~ 223 (300)
T 2qc5_A 213 RITTT-GEISEY 223 (300)
T ss_dssp EECTT-CCEEEE
T ss_pred EEcCC-CcEEEE
Confidence 99994 444444
No 142
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.43 E-value=2.2e-13 Score=126.94 Aligned_cols=100 Identities=6% Similarity=0.001 Sum_probs=81.3
Q ss_pred cCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhc
Q 004302 96 IVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKE 174 (762)
Q Consensus 96 ~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~ 174 (762)
.+|....|++++||+|||+|||+||++| +.++|.|++++++|++ +.|+.|+.+. .. ++.+++
T Consensus 39 ~~~~~~~l~~~~~k~vlv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~ 101 (141)
T 3hxs_A 39 YENHSKEWKYLGDKPAIVDFYADWCGPC-------KMVAPILEELSKEYAGKIYIYKVNVDK------EP----ELARDF 101 (141)
T ss_dssp CSSCCCCCCCCCSSCEEEEEECTTCTTH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHHHT
T ss_pred cccchhHHHHhCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCceEEEEEECCC------CH----HHHHHc
Confidence 3445889999999999999999999866 9999999999999997 9999999876 32 233444
Q ss_pred CCCcceeeCCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 175 YITFPILLSNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 175 ~itfPVl~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
++ .++|+ ++++++|+++ +..|..+.++|.+.|++++.+
T Consensus 102 ~v---------------~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~k 140 (141)
T 3hxs_A 102 GI---------------QSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLLK 140 (141)
T ss_dssp TC---------------CSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC-
T ss_pred CC---------------CCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHcc
Confidence 43 24564 7889999998 789999999999999887654
No 143
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=3.8e-11 Score=121.72 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=122.2
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...|.+|++++ +++|||++..+++|.++|.+|++...... .....|.+|++++ ++.|||++..++.|
T Consensus 98 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~-----------~~~~~~~~i~~~~-~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 98 DSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELP-----------NKGSYPSFITLGS-DNALWFTENQNNAI 164 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS-----------STTCCEEEEEECT-TSCEEEEETTTTEE
T ss_pred CCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCC-----------CCCCCCceEEEcC-CCCEEEEeCCCCEE
Confidence 56899999995 78999999999999999998887755421 1245799999997 67999999999999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.++|. ++.+..+... ..+..|.+|+++++|.|||++..+++|++++
T Consensus 165 ~~~~~-~g~~~~~~~~---------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 165 GRITE-SGDITEFKIP---------------------------------TPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEECT-TCCEEEEECS---------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEEcC-CCcEEEeeCC---------------------------------CCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 99998 6655554211 1144799999999999999999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
. ++.+..+....+ ...| .+.+++ .+|+|||++..+++|.+
T Consensus 211 ~-~g~~~~~~~~~~-----------------------------------~~~~---~~i~~~-~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 211 T-SGEITEFKIPTP-----------------------------------NARP---HAITAG-AGIDLWFTEWGANKIGR 250 (299)
T ss_dssp T-TCCEEEEECSST-----------------------------------TCCE---EEEEEC-STTCEEEEETTTTEEEE
T ss_pred C-CCcEEEEECCCC-----------------------------------CCCc---eeEEEC-CCCCEEEeccCCceEEE
Confidence 9 666544311000 0111 223333 35789999999999999
Q ss_pred EECCCCcEEEEe
Q 004302 504 LNRESGVCSNFQ 515 (762)
Q Consensus 504 idl~~~~~sti~ 515 (762)
++.+ +.+..+.
T Consensus 251 ~d~~-g~~~~~~ 261 (299)
T 2z2n_A 251 LTSN-NIIEEYP 261 (299)
T ss_dssp EETT-TEEEEEE
T ss_pred ECCC-CceEEEe
Confidence 9994 5555543
No 144
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.43 E-value=7e-14 Score=133.89 Aligned_cols=118 Identities=6% Similarity=-0.075 Sum_probs=87.9
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHH---HHHHHHCC-CeEEEEEEcCCCcc
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKV---KSIQQSFP-QLQVIGFLHGCSTI 159 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L---~~L~~~y~-~v~VvgV~~~~~~~ 159 (762)
.+.++...| +..++.+++++++||+|||+|| |+||+|| ++++|.| .++++.+. ++.++.|+.++
T Consensus 25 ~~~~~~~~~-~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C-------~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~--- 93 (154)
T 2ju5_A 25 PIAAANLQW-ESYAEALEHSKQDHKPIGLFFTGSDWCMWC-------IKMQDQILQSSEFKHFAGVHLHMVEVDFPQ--- 93 (154)
T ss_dssp SSCCCCCCE-ECHHHHHHHHHHHCCCEEEEEECTTTCHHH-------HHHHHHTTTSHHHHHHHHHHCEEEEEECCS---
T ss_pred hcccCCCCC-CCHHHHHHHHHhCCCeEEEEEeCCCCCHhH-------HHHHHHHhcCHHHHHHhcCcEEEEEecCcc---
Confidence 445556677 5556778888899999999999 9999977 9999999 78877664 49999998876
Q ss_pred CcCCHHHHHHHHHhcCCCcceeeCCCCcccccc---Cce-EEEEcCCCCEEEEecCCc--CHHHHHHHHHHHHHh
Q 004302 160 SAVDQTRLVEMLMKEYITFPILLSNKNFPQMEN---GAC-YLLSKDFGNARVFHENSL--DIGMLNKAVEELIMQ 228 (762)
Q Consensus 160 ~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~y---gv~-t~lId~~G~iv~~~~G~~--~~~~L~~~l~~ll~~ 228 (762)
.. +++|++ .|....+...| ++| ++|||++|+++.+. |.. +.+++.+.|++++++
T Consensus 94 ---~~----------~~~~~~-~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~ 153 (154)
T 2ju5_A 94 ---KN----------HQPEEQ-RQKNQELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL 153 (154)
T ss_dssp ---SC----------CCCHHH-HHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred ---cc----------CCChhh-HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence 11 233332 22222333444 356 58999999999999 988 888899999988754
No 145
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.42 E-value=1.8e-11 Score=124.14 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=119.9
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...|.+|++++ +++|||++..+++|.+++.+|++...... .....|.+|++++ +++|||++..+++|
T Consensus 103 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-----------~~~~~~~~i~~d~-~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 103 DSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLP-----------NKGSYPAFITLGS-DNALWFTENQNNSI 169 (300)
T ss_dssp TCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECS-----------STTCCEEEEEECT-TSSEEEEETTTTEE
T ss_pred CCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCC-----------CCCCCceeEEECC-CCCEEEEecCCCeE
Confidence 36799999995 78999999999999999999887754321 1245799999997 67799999999999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.+++. ++.+..+... ..+..|.+|+++++|+|||++..+++|++++
T Consensus 170 ~~~~~-~g~~~~~~~~---------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLP---------------------------------TNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp EEECT-TCCEEEEECS---------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEECC-CCcEEEeeCC---------------------------------CCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 99998 4544444211 1145799999999999999999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
. ++.+..+....+ ...| .+.+++ .+|+|||++..+++|.+
T Consensus 216 ~-~g~~~~~~~~~~-----------------------------------~~~~---~~i~~d-~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 216 T-TGEISEYDIPTP-----------------------------------NARP---HAITAG-KNSEIWFTEWGANQIGR 255 (300)
T ss_dssp T-TCCEEEEECSST-----------------------------------TCCE---EEEEEC-STTCEEEEETTTTEEEE
T ss_pred C-CCcEEEEECCCC-----------------------------------CCCc---eEEEEC-CCCCEEEeccCCCeEEE
Confidence 8 555443311000 0111 223333 35789999999999999
Q ss_pred EECCCCcEEEE
Q 004302 504 LNRESGVCSNF 514 (762)
Q Consensus 504 idl~~~~~sti 514 (762)
++.+ +.+..+
T Consensus 256 ~~~~-g~~~~~ 265 (300)
T 2qc5_A 256 ITND-NTIQEY 265 (300)
T ss_dssp ECTT-SCEEEE
T ss_pred ECCC-CcEEEE
Confidence 9995 444443
No 146
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.42 E-value=6.1e-14 Score=130.76 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=81.6
Q ss_pred CCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHh
Q 004302 97 VEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMK 173 (762)
Q Consensus 97 ~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k 173 (762)
++....|++.+||+|||+|||+||++| +++.|.+ .+++++|+++.++.|+.+. ..+...++.++
T Consensus 20 ~~~~~~l~~~~~k~vlv~F~a~wC~~C-------~~~~~~~~~~~~l~~~~~~~~~~~vd~~~------~~~~~~~l~~~ 86 (134)
T 2fwh_A 20 DELNQALVEAKGKPVMLDLYADWCVAC-------KEFEKYTFSDPQVQKALADTVLLQANVTA------NDAQDVALLKH 86 (134)
T ss_dssp HHHHHHHHHHTTSCEEEEEECTTCHHH-------HHHHHHTTTSHHHHHHTTTSEEEEEECTT------CCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEECCCCHHH-------HHHHHHhcCCHHHHHHhcCcEEEEEeCCC------CcchHHHHHHH
Confidence 444567777889999999999999877 9999999 9999999999999999875 22445556666
Q ss_pred cCCCcceeeCCCCccccccCce-EEEEcCCCCEE--EEecCCcCHHHHHHHHHHH
Q 004302 174 EYITFPILLSNKNFPQMENGAC-YLLSKDFGNAR--VFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 174 ~~itfPVl~D~~~~~~~~ygv~-t~lId~~G~iv--~~~~G~~~~~~L~~~l~~l 225 (762)
+++ .++| ++++|++|+++ .+..|..+.++|.+.|+++
T Consensus 87 ~~v---------------~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 87 LNV---------------LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp TTC---------------CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred cCC---------------CCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 664 2456 58899999998 7899999999998888754
No 147
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=99.42 E-value=1.2e-13 Score=136.89 Aligned_cols=110 Identities=4% Similarity=-0.074 Sum_probs=88.9
Q ss_pred CccccCCC-CCCEE-EEEEeccCCCCccCCCCcchh-hcHHHHHHHHHCC--Ce-EEEEEEcCCCccCcCCHHHHHHHHH
Q 004302 99 DNIHFFKR-GGAFL-VLAGRFVDNCDSLIAGCGTVV-TFEKVKSIQQSFP--QL-QVIGFLHGCSTISAVDQTRLVEMLM 172 (762)
Q Consensus 99 ~~v~Lsd~-rGK~V-vLnFWAtWC~pC~~p~C~~~~-emP~L~~L~~~y~--~v-~VvgV~~~~~~~~e~~~~~v~~f~~ 172 (762)
++++|+++ +||+| |+.||+.|||+| .. |||.|.+++++|+ ++ +|+||+.+. ....++|.+
T Consensus 37 ~~vsLsd~~~Gk~vVL~fyP~~~tp~C-------t~~El~~f~~~~~ef~~~g~d~VigIS~D~-------~~~~~~f~~ 102 (176)
T 4f82_A 37 NACSVRDQVAGKRVVIFGLPGAFTPTC-------SAQHVPGYVEHAEQLRAAGIDEIWCVSVND-------AFVMGAWGR 102 (176)
T ss_dssp EEEEHHHHHTTCEEEEEEESCTTCHHH-------HHTHHHHHHHHHHHHHHTTCCEEEEEESSC-------HHHHHHHHH
T ss_pred eEEeHHHHhCCCeEEEEEEcCCCCCCC-------CHHHHHHHHHHHHHHHhCCCCEEEEEeCCC-------HHHHHHHHH
Confidence 47899997 99855 668999999866 88 9999999999996 48 999999874 788999999
Q ss_pred hcCCC--cceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecCCc---CHHHHHHHHH
Q 004302 173 KEYIT--FPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHENSL---DIGMLNKAVE 223 (762)
Q Consensus 173 k~~it--fPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G~~---~~~~L~~~l~ 223 (762)
+++++ ||++.|.+..+.++||+ + +||| ++|+|++...++. +....++.|+
T Consensus 103 ~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~~~~~~~~a~~vL~ 172 (176)
T 4f82_A 103 DLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAPGKFEVSDAASVLA 172 (176)
T ss_dssp HTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCTTCCSSSSHHHHHH
T ss_pred HhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCCCCcchhhHHHHHH
Confidence 99999 99999998777766653 3 5888 9999999877542 2234555554
No 148
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.41 E-value=7.6e-13 Score=121.10 Aligned_cols=98 Identities=7% Similarity=-0.022 Sum_probs=77.2
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC-CeEEEEEE--cCCCccCcCCHHHHHHHHHhcCC
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP-QLQVIGFL--HGCSTISAVDQTRLVEMLMKEYI 176 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~-~v~VvgV~--~~~~~~~e~~~~~v~~f~~k~~i 176 (762)
.......+||++||+|||+||++| ++++|.|++++++|+ ++.|+.|+ .+. . .++.+++++
T Consensus 18 ~~~~~~~~~k~~lv~f~a~wC~~C-------~~~~~~l~~~~~~~~~~v~~~~v~~~~d~-------~---~~~~~~~~v 80 (126)
T 2l57_A 18 ENLEEAKEGIPTIIMFKTDTCPYC-------VEMQKELSYVSKEREGKFNIYYARLEEEK-------N---IDLAYKYDA 80 (126)
T ss_dssp SSTTTCCSSSCEEEEEECSSCHHH-------HHHHHHHHHHHHHSSSSCEEEEEETTSSH-------H---HHHHHHTTC
T ss_pred HHHHHHhCCCcEEEEEECCCCccH-------HHHHHHHHHHHHHhcCCeEEEEEeCCCCc-------h---HHHHHHcCC
Confidence 334556789999999999999876 999999999999996 49999999 543 1 233344443
Q ss_pred CcceeeCCCCccccccCce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 177 TFPILLSNKNFPQMENGAC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 177 tfPVl~D~~~~~~~~ygv~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
. ++| +++++++|+++.+..|..+.++|.+.|++++...
T Consensus 81 ~---------------~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 81 N---------------IVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE 119 (126)
T ss_dssp C---------------SSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred c---------------ceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence 2 456 4788999999999999999999998888776554
No 149
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.37 E-value=1.8e-10 Score=118.66 Aligned_cols=163 Identities=11% Similarity=0.070 Sum_probs=120.4
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.|+++|+.++.||++|..+++|++++.++. ...+.. ....|.+|++++ ++.|||++.++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~------------~~~~~~~l~~~~-dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH------------PSHHQNGHCLNK-QGHLIACSHGLRR 91 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEES------------SCSSEEEEEECT-TCCEEEEETTTTE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC------------CCCCcceeeECC-CCcEEEEecCCCe
Confidence 57899999999866679999999999999999776 444432 124599999997 6889999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEEC--------
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINR-------- 414 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~-------- 414 (762)
|.++|+.++.+..+.... ....++.|.+|+++++|+|||+|.
T Consensus 92 i~~~d~~~g~~~~~~~~~------------------------------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~ 141 (296)
T 3e5z_A 92 LERQREPGGEWESIADSF------------------------------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPE 141 (296)
T ss_dssp EEEECSTTCCEEEEECEE------------------------------TTEECCCCCCEEECTTSCEEEEECSHHHHCGG
T ss_pred EEEEcCCCCcEEEEeecc------------------------------CCCCCCCCCCEEECCCCCEEEECCcccccccc
Confidence 999999777776664211 012266899999999999999986
Q ss_pred ---------CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEE
Q 004302 415 ---------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI 485 (762)
Q Consensus 415 ---------gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~ 485 (762)
..++|++++.+ +.+..+..+.. . +.+.+++
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-------------------------------------~---~~gi~~s 180 (296)
T 3e5z_A 142 EGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV-------------------------------------K---PNGLAFL 180 (296)
T ss_dssp GSSCCCCCSSSCEEEEECTT-SCEEEEECCCS-------------------------------------S---EEEEEEC
T ss_pred ccccccccCCCcEEEEECCC-CCEEEeecCCC-------------------------------------C---CccEEEC
Confidence 24689999887 55544321100 1 1234554
Q ss_pred ecCCEEEEEECCCCEEEEEECC-CCcE
Q 004302 486 AFQNHILLCDIVGQRIMRLNRE-SGVC 511 (762)
Q Consensus 486 ~~~g~LYVADt~NhRIrkidl~-~~~~ 511 (762)
+++..| |+|+.+++|.+++++ ++.+
T Consensus 181 ~dg~~l-v~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 181 PSGNLL-VSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp TTSCEE-EEETTTTEEEEEEECSSSCE
T ss_pred CCCCEE-EEeCCCCeEEEEEECCCCcC
Confidence 444455 999999999999986 5555
No 150
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.35 E-value=7.5e-11 Score=119.52 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=117.0
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...|.+|++++ ++++||++..++.|.++|.+|++...... ..+..|.+|++++ ++.|||++..+++|
T Consensus 140 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-----------~~~~~~~~i~~~~-~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 140 GSYPSFITLGS-DNALWFTENQNNAIGRITESGDITEFKIP-----------TPASGPVGITKGN-DDALWFVEIIGNKI 206 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS-----------STTCCEEEEEECT-TSSEEEEETTTTEE
T ss_pred CCCCceEEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCC-----------CCCCcceeEEECC-CCCEEEEccCCceE
Confidence 56899999995 68999999999999999998887764321 1346799999997 68899999999999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.++|. ++.+..+... ..+..|++|+++++|+|||++..+++|++||
T Consensus 207 ~~~~~-~g~~~~~~~~---------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 207 GRITT-SGEITEFKIP---------------------------------TPNARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp EEECT-TCCEEEEECS---------------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred EEECC-CCcEEEEECC---------------------------------CCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 99998 5655544211 1145799999999999999999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
+ ++.+..+....+ ...| ...++ .++.|||++. ++.|.+
T Consensus 253 ~-~g~~~~~~~~~~-----------------------------------~~~~---~~i~~--~~g~l~v~~~-~~~l~~ 290 (299)
T 2z2n_A 253 S-NNIIEEYPIQIK-----------------------------------SAEP---HGICF--DGETIWFAME-CDKIGK 290 (299)
T ss_dssp T-TTEEEEEECSSS-----------------------------------SCCE---EEEEE--CSSCEEEEET-TTEEEE
T ss_pred C-CCceEEEeCCCC-----------------------------------CCcc---ceEEe--cCCCEEEEec-CCcEEE
Confidence 8 455543311000 0111 22344 6789999997 689999
Q ss_pred EECCCCc
Q 004302 504 LNRESGV 510 (762)
Q Consensus 504 idl~~~~ 510 (762)
+++.++.
T Consensus 291 ~~~~~~~ 297 (299)
T 2z2n_A 291 LTLIKDN 297 (299)
T ss_dssp EEEC---
T ss_pred EEcCccc
Confidence 9988754
No 151
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=99.34 E-value=3.5e-12 Score=113.90 Aligned_cols=92 Identities=9% Similarity=-0.105 Sum_probs=73.5
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+.+.+||++||+|||+||++| ++++|.|++++++|+++.++.|+.++ ... ++.+++++.
T Consensus 19 ~~~~~~~~vlv~f~a~wC~~C-------~~~~~~l~~~~~~~~~v~~~~vd~~~-----~~~----~~~~~~~v~----- 77 (111)
T 2pu9_C 19 VKAAGDKPVVLDMFTQWCGPS-------KAMAPKYEKLAEEYLDVIFLKLDCNQ-----ENK----TLAKELGIR----- 77 (111)
T ss_dssp HTTCTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEECSS-----TTH----HHHHHHCCS-----
T ss_pred HHhcCCCEEEEEEECCcCHhH-------HHHCHHHHHHHHHCCCeEEEEEecCc-----chH----HHHHHcCCC-----
Confidence 345579999999999999876 99999999999999999999998873 122 233344432
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
++|+++++++|+++.+..|.. .++|.+.|++++
T Consensus 78 ----------~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~ 110 (111)
T 2pu9_C 78 ----------VVPTFKILKENSVVGEVTGAK-YDKLLEAIQAAR 110 (111)
T ss_dssp ----------BSSEEEEESSSSEEEEEESSC-HHHHHHHHHHHH
T ss_pred ----------eeeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence 577888999999999999984 788888888765
No 152
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.32 E-value=3.5e-12 Score=117.51 Aligned_cols=97 Identities=7% Similarity=-0.041 Sum_probs=77.5
Q ss_pred ccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHh
Q 004302 95 NIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMK 173 (762)
Q Consensus 95 n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k 173 (762)
..+++.++....+||+|||+|||+||++| ++++|.|++++++|++ +.++.|+.+. .. ++.++
T Consensus 29 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C-------~~~~p~l~~~~~~~~~~v~~~~vd~d~------~~----~l~~~ 91 (128)
T 3ul3_B 29 QNGSNIINGVNMKNTVIVLYFFAKWCQAC-------TMQSTEMDKLQKYYGKRIYLLKVDLDK------NE----SLARK 91 (128)
T ss_dssp CCCCSSSSBTTSCCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHGGGEEEEEEEGGG------CH----HHHHH
T ss_pred cCCccHHHHHHccCCEEEEEEECCCCHHH-------HHHhHHHHHHHHHhcCCeEEEEEECCC------CH----HHHHH
Confidence 34455778888899999999999999876 9999999999999986 9999999875 22 33444
Q ss_pred cCCCcceeeCCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 174 EYITFPILLSNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 174 ~~itfPVl~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
+++ .++|+ +++ ++|+++.++.|..+.++|.+.|++
T Consensus 92 ~~v---------------~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~ 127 (128)
T 3ul3_B 92 FSV---------------KSLPTIILL-KNKTMLARKDHFVSSNDLIALIKK 127 (128)
T ss_dssp TTC---------------CSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHTT
T ss_pred cCC---------------CCcCEEEEE-ECCEEEEEecCCCCHHHHHHHHHh
Confidence 443 24665 455 799999999999999998888753
No 153
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.31 E-value=1.9e-10 Score=122.07 Aligned_cols=248 Identities=11% Similarity=0.048 Sum_probs=152.6
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
..|.+|+++ ++++||+....+.|.++|. +++++..+.. ...|.+|++++ ++.|||++..+++|
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-------------~~~p~~i~~~~-~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG-------------FTSPRYIHFLS-DEKAYVTQIWDYRI 107 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-------------CSSEEEEEEEE-TTEEEEEEBSCSEE
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC-------------CCCCcEEEEeC-CCeEEEEECCCCeE
Confidence 467899997 7999999999999999998 6888777732 25699999986 56999999888999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECC-CCEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS-FETLWIM 422 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~g-N~rI~v~ 422 (762)
.++|+.++.+......|. + ..++..|.+|++ .++.|||++.+ .++|.+|
T Consensus 108 ~~iD~~t~~~~~~i~~g~----------------~-------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 108 FIINPKTYEITGYIECPD----------------M-------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp EEEETTTTEEEEEEECTT----------------C-------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEE
T ss_pred EEEECCCCeEEEEEEcCC----------------c-------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEE
Confidence 999999988765444331 0 122457999999 48999999985 8999999
Q ss_pred ECCCCcEEEEEc-CCceeeEE----eceeh-----h----------hhhhhhccCCccccccccCCcccccCCC--Ccce
Q 004302 423 DLASGEIKEAVK-GFSKVLEI----CGVLV-----M----------EKVFLLKQMPQDWLLHQIDSSCSLKELP--YAGL 480 (762)
Q Consensus 423 d~~~g~I~ti~~-G~g~~~~~----~G~~~-----~----------~r~~~~~~~p~~~~~~~~d~~~~~~~~p--~~~l 480 (762)
|+.++.+..... |.. +..+ .|.+. . .++..++........ .. ..+ ..+.
T Consensus 158 D~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~-------~~-~~~~g~~p~ 228 (328)
T 3dsm_A 158 DTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK-------QF-KFKLGDWPS 228 (328)
T ss_dssp ETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE-------EE-ECCTTCCCE
T ss_pred ECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE-------EE-ecCCCCCce
Confidence 999887543322 211 1110 01110 0 111111110000000 00 011 1235
Q ss_pred eeeEEecCCEEEEEECCCCEEEEEECCCCcEEEEeeccccccCCCceeec-c-ccceeecc-cccCCCccccceeeecCC
Q 004302 481 ISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-P-LERVYAVA-GGHQGSWTDHIQRCSLLP 557 (762)
Q Consensus 481 gsav~~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~-p-l~~v~~~~-~~~~g~~~~~~~~~~~~p 557 (762)
+.+++++++.|||++. .|.++|.+++.+....+-..+ .+.|+.+.. | -+++|-.. ..+ .....+..|+..
T Consensus 229 ~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~- 301 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQ- 301 (328)
T ss_dssp EEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTS--SSEEEEEEECTT-
T ss_pred eEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEccccc--ccCCEEEEECCC-
Confidence 5666667889999987 899999998876422221111 245666644 4 34444322 000 123456777876
Q ss_pred CceeEEEEE-ecCCCccc
Q 004302 558 GRIDIKVNV-DIPSDTEL 574 (762)
Q Consensus 558 G~~~~~v~v-~~p~~~~l 574 (762)
|+..-++.+ ..|.++.+
T Consensus 302 g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 302 GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp CCEEEEEEEEESEEEEEE
T ss_pred CCEEEEEEeccCcceEEE
Confidence 776433333 44555443
No 154
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.31 E-value=3.4e-12 Score=115.32 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=69.5
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+.++|+|||+|||+||+|| +...|.++++++.|+++.++.|+.++ .. +..+++++
T Consensus 16 ~~~~~k~vvv~F~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~vd~d~------~~----~l~~~~~V------- 71 (105)
T 3zzx_A 16 NEAGNKLVVIDFYATWCGPC-------KMIAPKLEELSQSMSDVVFLKVDVDE------CE----DIAQDNQI------- 71 (105)
T ss_dssp HHTTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTEEEEEEETTT------CH----HHHHHTTC-------
T ss_pred HhcCCCEEEEEEECCCCCCc-------cCCCcchhhhhhccCCeEEEEEeccc------CH----HHHHHcCC-------
Confidence 34568999999999999977 99999999999999999999998875 22 23333332
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.++||+++-++|+++.+..|. +.++|.+.|++
T Consensus 72 --------~~~PT~~~~~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 72 --------ACMPTFLFMKNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp --------CBSSEEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred --------CeecEEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence 246787777899999999994 77777777664
No 155
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=1.1e-10 Score=121.90 Aligned_cols=164 Identities=11% Similarity=0.105 Sum_probs=123.6
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|.|.+.++.++.||++|..+++|.+++.+|++..+... -..|.|+++++ +++|||++.++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~-------------~~~~~gl~~d~-dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDA-------------TAFTNGNAVDA-QQRLVHCEHGRRA 108 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEES-------------CSCEEEEEECT-TSCEEEEETTTTE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCC-------------CCccceeeECC-CCCEEEEECCCCE
Confidence 578899999998777799999999999999998876544321 13599999997 6789999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEEC--------
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINR-------- 414 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~-------- 414 (762)
|.+++.+ +.+.+++... ....++.|.+|+++++|.||++|.
T Consensus 109 v~~~~~~-g~~~~~~~~~------------------------------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~ 157 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRY------------------------------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS 157 (305)
T ss_dssp EEEECTT-SCEEEEECEE------------------------------TTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred EEEECCC-CCEEEEEecc------------------------------CCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence 9999986 6566664221 012377899999999999999985
Q ss_pred ---------CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEE
Q 004302 415 ---------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI 485 (762)
Q Consensus 415 ---------gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~ 485 (762)
..+.|+++|++++.+..+. +. ..| .+.+++
T Consensus 158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-------------------------------------~~p---~gl~~s 196 (305)
T 3dr2_A 158 QGCPADPELAHHSVYRLPPDGSPLQRMA-DL-------------------------------------DHP---NGLAFS 196 (305)
T ss_dssp GSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-------------------------------------SSE---EEEEEC
T ss_pred cccccccccCCCeEEEEcCCCCcEEEEe-cC-------------------------------------CCC---cceEEc
Confidence 2467999998777765442 10 011 235565
Q ss_pred ecCCEEEEEECCC-----CEEEEEECCCCcEE
Q 004302 486 AFQNHILLCDIVG-----QRIMRLNRESGVCS 512 (762)
Q Consensus 486 ~~~g~LYVADt~N-----hRIrkidl~~~~~s 512 (762)
+++..|||+|+.+ ++|.+++.+++.++
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~ 228 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALH 228 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence 6666899999984 89999998766543
No 156
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.30 E-value=5.2e-12 Score=114.69 Aligned_cols=89 Identities=10% Similarity=0.009 Sum_probs=72.4
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+.+||++||+|||+||+|| ++++|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 28 ~~~~k~vlv~F~a~wC~~C-------~~~~p~l~~l~~~~~~v~~~~vd~d~------~~----~l~~~~~v-------- 82 (116)
T 3qfa_C 28 AAGDKLVVVDFSATWCGPS-------KMIKPFFHSLSEKYSNVIFLEVDVDD------CQ----DVASECEV-------- 82 (116)
T ss_dssp HHTTSCEEEEEECTTCHHH-------HHHHHHHHHHHTTCTTSEEEEEETTT------TH----HHHHHTTC--------
T ss_pred hcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHCCCCEEEEEECCC------CH----HHHHHcCC--------
Confidence 3479999999999999877 99999999999999999999998875 22 23344433
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|. +.++|++.|++++
T Consensus 83 -------~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 116 (116)
T 3qfa_C 83 -------KSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 116 (116)
T ss_dssp -------CSSSEEEEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred -------ccccEEEEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence 246776666899999999999 9999999988763
No 157
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.30 E-value=2.1e-12 Score=119.23 Aligned_cols=99 Identities=11% Similarity=-0.019 Sum_probs=77.3
Q ss_pred ccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHH--HHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCc
Q 004302 102 HFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVK--SIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITF 178 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~--~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itf 178 (762)
.....+||+|||+|||+||+|| ++++|.|+ +++++|++ +.++.|+.+. .+...++.+++++.+
T Consensus 23 ~~~~~~~k~vlv~f~a~wC~~C-------~~~~~~l~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~l~~~~~v~~ 88 (133)
T 3fk8_A 23 AAGKRTHKPTLLVFGANWCTDC-------RALDKSLRNQKNTALIAKHFEVVKIDVGN-------FDRNLELSQAYGDPI 88 (133)
T ss_dssp HHHHHHTCCEEEEEECTTCHHH-------HHHHHHHTSHHHHHHHHHHCEEEEEECTT-------TTSSHHHHHHTTCGG
T ss_pred HHHHhcCCcEEEEEcCCCCHHH-------HHHHHHhCCHHHHHHhcCCEEEEEEeCCc-------ccchHHHHHHhCCcc
Confidence 3334579999999999999877 99999999 99999965 9999999842 011234566777654
Q ss_pred ceeeCCCCccccccCceE-EEEcCCCCEEEEecC-------CcCHHHHHHHHHHHH
Q 004302 179 PILLSNKNFPQMENGACY-LLSKDFGNARVFHEN-------SLDIGMLNKAVEELI 226 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G-------~~~~~~L~~~l~~ll 226 (762)
+ .++|+ +++|++|+++....| ..+.+++.+.|+++.
T Consensus 89 ~------------~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 89 Q------------DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp G------------GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred C------------CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 3 45674 788999999999999 678888888888764
No 158
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.29 E-value=3.6e-12 Score=121.84 Aligned_cols=92 Identities=7% Similarity=-0.194 Sum_probs=76.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+|||+|||+||+|| ++++|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 22 ~~k~vlv~F~a~WC~~C-------~~~~p~l~~l~~~~~~~~~~~~vd~d~------~~----~l~~~~~v--------- 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVC-------LQLDDILSKTSSDLSKMAAIYLVDVDQ------TA----VYTQYFDI--------- 75 (149)
T ss_dssp CSSEEEEEEECTTSHHH-------HHHHHHHHHHHTTTTTTEEEEEEETTT------CC----HHHHHTTC---------
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHccCceEEEEEECCc------CH----HHHHHcCC---------
Confidence 58999999999999977 9999999999999998 9999999875 21 23333332
Q ss_pred CccccccCceEEEEcCCCCEE---------EEecC-CcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACYLLSKDFGNAR---------VFHEN-SLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv---------~~~~G-~~~~~~L~~~l~~ll~~~~ 230 (762)
.++|++++.++|+++ .+..| ..+.++|.+.|+++++..+
T Consensus 76 ------~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 76 ------SYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp ------CSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred ------CccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 256788789999999 88899 8999999999999987653
No 159
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.29 E-value=1.5e-10 Score=123.47 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=133.4
Q ss_pred cccCCcceEEEccCCCEEEEEeCC-----CcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 262 LLLHFPGCISADESGNRLFLSDSN-----HHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~-----nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
..|..|.+|++|+ +++|||+|++ .++|+++|. +|+++..+...... ......|.+|+++++++.+||
T Consensus 64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yv 136 (343)
T 2qe8_A 64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------TLSNSFVNDLAVDLIHNFVYI 136 (343)
T ss_dssp CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------SCTTCCCCEEEEETTTTEEEE
T ss_pred cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------cccccccceEEEecCCCEEEE
Confidence 4789999999996 6899999998 589999998 58877766532110 012356899999976789999
Q ss_pred EeC---CCCeEEEEeCCCCEEEEEeecC-CCCCCCCchhhhhhhccCcc---ccCCCccCCCCCC-CCCCcceEEEcCCC
Q 004302 336 VDS---ENHAIRRADMGRRVLETVYPTS-GISKKNNSLWAWIMEKLGFE---RDNDTKSEKLDPQ-SLIFPWHLMKSEDD 407 (762)
Q Consensus 336 ADt---~NhrIRkid~~~g~I~TiaG~G-~~~~~G~~~~~~~~~~~G~~---~~~~~~~~~~~~~-~L~~P~gIavd~dG 407 (762)
+|+ .++.|.++|+.++.+..+.... .....+.. + ...|.. ...+. ... ....|.||+++++|
T Consensus 137 td~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~---~--~~~g~~~~~~~~~g-----~~~~~~~~~~gia~s~dg 206 (343)
T 2qe8_A 137 SDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID---L--VIDGVPVQIGQPDG-----TVIRPHLGVNGIVLDAEN 206 (343)
T ss_dssp EECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC---C--EETTEECBEECTTS-----CEECCCCCEEEEEECTTS
T ss_pred EcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc---e--eECCEEEEeccCCC-----ceeceecccceeEeccCC
Confidence 999 8999999999877665553210 00000000 0 000100 00000 000 11468999999997
Q ss_pred -cEEEEECCCCEEEEEECCC---CcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeee
Q 004302 408 -NLLIINRSFETLWIMDLAS---GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISS 483 (762)
Q Consensus 408 -~LYVAD~gN~rI~v~d~~~---g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsa 483 (762)
.||+++...++|++++... +.+ +.+ ++. .. +.. .+. .+.| -+.+
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~~~-----~~~------------~~~--~~-----~~~----~g~-~g~p---dgia 254 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNLQL-----TDA------------ELG--SK-----IER----YSE-KPIC---DGIS 254 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCTTC-----CHH------------HHH--TT-----CEE----EEE-CCSC---SCEE
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCCCC-----Chh------------hhh--cc-----eEe----ccc-CCCC---ceEE
Confidence 6999999999999998521 110 000 000 00 000 000 0122 3455
Q ss_pred EEecCCEEEEEECCCCEEEEEECCCCcEEEEeeccccccCCCceeec-ccccee
Q 004302 484 SIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVY 536 (762)
Q Consensus 484 v~~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~-pl~~v~ 536 (762)
++. +|+|||+|..+++|.+++..++.+.++... ..+..|..+.+ |-+++|
T Consensus 255 ~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--~~~~~p~~va~~~~g~l~ 305 (343)
T 2qe8_A 255 IDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTD--EKLSWTDSFNFGSDGYLY 305 (343)
T ss_dssp ECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEEC--GGGSCEEEEEECTTSCEE
T ss_pred ECC-CCCEEEEccCCCeEEEEECCCCCEEEEEEC--CceecCCeeEECCCCcEE
Confidence 543 579999999999999999955555544321 12344544444 334444
No 160
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.29 E-value=2.1e-10 Score=118.16 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=119.2
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC-----
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS----- 338 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt----- 338 (762)
..|.+|++++ +|+|||++.++++|.++|. +|++........ ...++.|.++++++ +++|||+|+
T Consensus 69 ~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--------~~~~~~~~~i~~d~-~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 69 HHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFE--------GKKLNSPNDVCLAP-DGSLWFSDPTYGID 138 (296)
T ss_dssp SSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEET--------TEECCCCCCEEECT-TSCEEEEECSHHHH
T ss_pred CCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccC--------CCCCCCCCCEEECC-CCCEEEECCccccc
Confidence 5689999996 7889999999999999999 888776653211 13467899999997 789999986
Q ss_pred ------------CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC
Q 004302 339 ------------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED 406 (762)
Q Consensus 339 ------------~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d 406 (762)
.+++|.+++.. +.+..+.+ .+..|.+|+++++
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----------------------------------~~~~~~gi~~s~d 182 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----------------------------------DRVKPNGLAFLPS 182 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----------------------------------CCSSEEEEEECTT
T ss_pred cccccccccccCCCcEEEEECCC-CCEEEeec-----------------------------------CCCCCccEEECCC
Confidence 24588888876 55544421 1446899999999
Q ss_pred CcEEEEECCCCEEEEEECC-CCcE-E--EEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceee
Q 004302 407 DNLLIINRSFETLWIMDLA-SGEI-K--EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 482 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~-~g~I-~--ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgs 482 (762)
|.++|+|..+++|++|+.+ +|.+ . .++ .. ..+.| .+.
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~----------------------------------~~~~p---~~i 223 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHF--TV----------------------------------EPGKT---DGL 223 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CC----------------------------------SSSCC---CSE
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eC----------------------------------CCCCC---CeE
Confidence 9888999999999999986 4554 1 111 00 00122 224
Q ss_pred eEEecCCEEEEEECCCCEEEEEECCCCcEEEEe
Q 004302 483 SSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 483 av~~~~g~LYVADt~NhRIrkidl~~~~~sti~ 515 (762)
+++ .+|+|||++ +++|.+++.++..+.++.
T Consensus 224 ~~d-~~G~l~v~~--~~~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 224 RVD-AGGLIWASA--GDGVHVLTPDGDELGRVL 253 (296)
T ss_dssp EEB-TTSCEEEEE--TTEEEEECTTSCEEEEEE
T ss_pred EEC-CCCCEEEEc--CCeEEEECCCCCEEEEEE
Confidence 443 467899999 889999999977766654
No 161
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=99.29 E-value=4e-12 Score=115.76 Aligned_cols=90 Identities=8% Similarity=-0.102 Sum_probs=72.0
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+.+||++||+|||+||++| ++++|.+++++++|+++.++.|+.++ ... ++.+++++
T Consensus 34 ~~~~~~~vv~f~a~wC~~C-------~~~~~~l~~~~~~~~~~~~~~vd~~~-----~~~----~~~~~~~v-------- 89 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPC-------KAMAPKYEKLAEEYLDVIFLKLDCNQ-----ENK----TLAKELGI-------- 89 (124)
T ss_dssp HTTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEECSS-----TTH----HHHHHHCC--------
T ss_pred hcCCCEEEEEEECCcCHhH-------HHHhHHHHHHHHHCCCCEEEEEecCc-----chH----HHHHHcCC--------
Confidence 4579999999999999876 99999999999999999999998863 121 23334443
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++.++|+++.+..|.. .++|.+.|++++
T Consensus 90 -------~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~ 123 (124)
T 1faa_A 90 -------RVVPTFKILKENSVVGEVTGAK-YDKLLEAIQAAR 123 (124)
T ss_dssp -------SSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred -------CeeeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence 2578888889999999999986 788888887754
No 162
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=5.8e-10 Score=116.14 Aligned_cols=165 Identities=7% Similarity=-0.058 Sum_probs=120.9
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
...+..|.|.+.++.++.||++|..+++|+++|.++.....+... ..|.++++++ ++.|||+. +
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~-------------~~~~~i~~~~-dG~l~v~~--~ 72 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD-------------APVSSVALRQ-SGGYVATI--G 72 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS-------------SCEEEEEEBT-TSSEEEEE--T
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC-------------CceEEEEECC-CCCEEEEE--C
Confidence 346788999999988899999999999999999965433334221 3589999997 56799997 5
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECC-----
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS----- 415 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~g----- 415 (762)
++|.++|.+++.+..++.... ...++.|.+++++++|.|||++.+
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~ 122 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDN------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAP 122 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCT------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBT
T ss_pred CeEEEEECCCCcEEEEEecCC------------------------------CCCCCCCCCEEECCCCCEEEecCCccccc
Confidence 799999999998887753310 012567999999999999999843
Q ss_pred ------CCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCC
Q 004302 416 ------FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQN 489 (762)
Q Consensus 416 ------N~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g 489 (762)
.++|++++.+ +.+..+..+. .. +.+.++++++.
T Consensus 123 ~~~~~~~~~l~~~d~~-g~~~~~~~~~-------------------------------------~~---pngi~~spdg~ 161 (297)
T 3g4e_A 123 AVLERHQGALYSLFPD-HHVKKYFDQV-------------------------------------DI---SNGLDWSLDHK 161 (297)
T ss_dssp TBCCTTCEEEEEECTT-SCEEEEEEEE-------------------------------------SB---EEEEEECTTSC
T ss_pred ccccCCCcEEEEEECC-CCEEEEeecc-------------------------------------cc---ccceEEcCCCC
Confidence 4578888875 3433331100 01 13456666677
Q ss_pred EEEEEECCCCEEEEEEC--CCCcEE
Q 004302 490 HILLCDIVGQRIMRLNR--ESGVCS 512 (762)
Q Consensus 490 ~LYVADt~NhRIrkidl--~~~~~s 512 (762)
.|||+|+.+++|.+++. .++.++
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred EEEEecCCCCcEEEEeccCCCCccc
Confidence 89999999999999986 566654
No 163
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.28 E-value=8e-12 Score=112.06 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=69.4
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+||++||+|||+||++| ++++|.|++++++|+++.|+.|+.+. .. ++.+++++.
T Consensus 22 ~~~k~vlv~f~a~wC~~C-------~~~~p~l~~l~~~~~~~~~~~vd~~~------~~----~l~~~~~v~-------- 76 (109)
T 3f3q_A 22 AQDKLVVVDFYATWCGPC-------KMIAPMIEKFSEQYPQADFYKLDVDE------LG----DVAQKNEVS-------- 76 (109)
T ss_dssp TSSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTCC--------
T ss_pred hcCCEEEEEEECCcCHhH-------HHHHHHHHHHHHHCCCCEEEEEECCC------CH----HHHHHcCCC--------
Confidence 359999999999999877 99999999999999999999998875 22 234444432
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
++|++++-++|+++.+..|. +.++|++.|+++
T Consensus 77 -------~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 77 -------AMPTLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp -------SSSEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred -------ccCEEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 56765444599999999998 668888888875
No 164
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.27 E-value=6.3e-13 Score=128.54 Aligned_cols=120 Identities=9% Similarity=-0.004 Sum_probs=72.6
Q ss_pred CccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCC-CeEEEEEEcCCCccCcCCHHHHHHHH-Hh
Q 004302 99 DNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFP-QLQVIGFLHGCSTISAVDQTRLVEML-MK 173 (762)
Q Consensus 99 ~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~-~v~VvgV~~~~~~~~e~~~~~v~~f~-~k 173 (762)
+.+.++..+||+|||+|||+||+|| +++.+.+ .++++.+. ++.++.|+.++. ........+. ..
T Consensus 38 ~~~~~a~~~gk~vlv~F~A~WC~~C-------~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~----~~~~~~~~~~~~~ 106 (172)
T 3f9u_A 38 LGMEYARQHNKPVMLDFTGYGCVNC-------RKMELAVWTDPKVSSIINNDYVLITLYVDNK----TPLTEPVKIMENG 106 (172)
T ss_dssp HHHHHHHHTTCCEEEEEECTTCHHH-------HHHHHHTTTSHHHHHHHHHHCEEEEEETTCC----CEEEEEEEEEETT
T ss_pred HHHHHHHHcCCeEEEEEECCCCHHH-------HHHHHHhcCCHHHHHHhcCCEEEEEEecCcc----cccchhhhhhhcc
Confidence 3566677889999999999999977 7752222 44444444 499999998751 0000000000 00
Q ss_pred cCCCcceeeCCCCcc-cccc---Cce-EEEEcCCCCEEEEecCCcC-HHHHHHHHHHHHHhh
Q 004302 174 EYITFPILLSNKNFP-QMEN---GAC-YLLSKDFGNARVFHENSLD-IGMLNKAVEELIMQQ 229 (762)
Q Consensus 174 ~~itfPVl~D~~~~~-~~~y---gv~-t~lId~~G~iv~~~~G~~~-~~~L~~~l~~ll~~~ 229 (762)
....++.+.+..... ...| ++| ++|||++|+++.++.|..+ .+++.+.|++.+++-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 107 TERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp EEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence 000000000000000 2334 456 5899999999999999998 999999999888763
No 165
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.27 E-value=3.7e-12 Score=118.51 Aligned_cols=95 Identities=9% Similarity=-0.044 Sum_probs=76.4
Q ss_pred cccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcce
Q 004302 101 IHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPI 180 (762)
Q Consensus 101 v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPV 180 (762)
+.+++.+||++||+|||+||++| ++++|.|++++++|+++.|+.|+.+. .. ++.+++++.
T Consensus 39 ~~~~~~~~k~vvv~f~a~wC~~C-------~~~~~~l~~l~~~~~~v~~~~v~~~~------~~----~~~~~~~v~--- 98 (139)
T 3d22_A 39 LSEASRDGKIVLANFSARWCGPS-------RQIAPYYIELSENYPSLMFLVIDVDE------LS----DFSASWEIK--- 98 (139)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------SH----HHHHHTTCC---
T ss_pred HHHHhhcCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHCCCCEEEEEeCcc------cH----HHHHHcCCC---
Confidence 44445679999999999999876 99999999999999889999999875 22 233444432
Q ss_pred eeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 181 LLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 181 l~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
++|++++.++|+++.+..|. +.++|++.|++++..
T Consensus 99 ------------~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 99 ------------ATPTFFFLRDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp ------------EESEEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred ------------cccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 45676666999999999998 888999999988875
No 166
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=99.26 E-value=2.1e-12 Score=126.58 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=66.9
Q ss_pred ccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 102 HFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
.+.+++||++||+|||+||+|| +.++|.|++++++|+++.|+.|+.++ ..+.+.+|..+
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC-------~~~~P~l~~l~~~~~~v~~~~v~~d~------~~~~~~~~~~~-------- 106 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDC-------QINLAALDFAQRLQPNIELAIISKGR------AEDDLRQRLAL-------- 106 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHH-------HHHHHHHHHHHHHCTTEEEEEECHHH------HHHHTTTTTTC--------
T ss_pred HHHHhCCCEEEEEEECCCChhH-------HHHHHHHHHHHHHCCCcEEEEEECCC------CHHHHHHHHHc--------
Confidence 4567899999999999999977 99999999999999989999987664 22222222211
Q ss_pred eCCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 182 LSNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.-.++|+ +++|++|+++.+. |... ..+.+.+.++
T Consensus 107 --------~v~~iPt~i~~~~~G~~~~~~-g~~p-~~~~~~i~~~ 141 (167)
T 1z6n_A 107 --------ERIAIPLVLVLDEEFNLLGRF-VERP-QAVLDGGPQA 141 (167)
T ss_dssp --------SSCCSSEEEEECTTCCEEEEE-ESSC-HHHHHHCHHH
T ss_pred --------CCCCcCeEEEECCCCCEEEEE-cCCC-HHHHHhHHHH
Confidence 1246785 7888889998776 4444 4444555544
No 167
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=4.6e-10 Score=119.63 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=124.5
Q ss_pred CCcceEEEccCCCEEEEEeCC----CcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-
Q 004302 265 HFPGCISADESGNRLFLSDSN----HHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE- 339 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~----nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~- 339 (762)
..|.+|++++ +|++||+... +.+|.+++ +|++. .+.+.. .+ ....|..|.||++|+ +++|||+|++
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~~--~~---~~~~~~~p~gv~~d~-~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQS--GN---AIITFDTVLGIKSDG-NGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEEE-ESCCCC--SS---CCCCCSCEEEEEECS-SSEEEEEECHH
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCee-cCCCcc--cC---cccceeEeeEEEEcC-CCcEEEEcCCC
Confidence 5899999995 7899999742 24899999 88754 332211 01 124689999999997 6899999998
Q ss_pred ----CCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEE
Q 004302 340 ----NHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIIN 413 (762)
Q Consensus 340 ----NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD 413 (762)
.++|.++|+.++. +.++ ..+. . .+ ....+|.+|++++ +|.+||+|
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~-~~~~-~-------------~~--------------~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVI-YLPP-P-------------IT--------------LSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEE-ECCT-T-------------TS--------------CTTCCCCEEEEETTTTEEEEEE
T ss_pred CcCCCCeEEEEECCCCeEEEEE-ECCh-h-------------hc--------------ccccccceEEEecCCCEEEEEc
Confidence 5899999998887 4444 2210 0 00 1134789999996 58999999
Q ss_pred C---CCCEEEEEECCCCcEEEEEcCCcee------eEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeE
Q 004302 414 R---SFETLWIMDLASGEIKEAVKGFSKV------LEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSS 484 (762)
Q Consensus 414 ~---gN~rI~v~d~~~g~I~ti~~G~g~~------~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav 484 (762)
. .++.|++||..++.+.++..+.... ....|.. +.. .+..+........+.+.++
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~---------------~~~-~~~~g~~~~~~~~~~gia~ 202 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP---------------VQI-GQPDGTVIRPHLGVNGIVL 202 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE---------------CBE-ECTTSCEECCCCCEEEEEE
T ss_pred CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE---------------EEe-ccCCCceeceecccceeEe
Confidence 9 8999999999988876654432100 0011110 000 0000111001123456777
Q ss_pred EecCCEEEEEECCCCEEEEEEC
Q 004302 485 IAFQNHILLCDIVGQRIMRLNR 506 (762)
Q Consensus 485 ~~~~g~LYVADt~NhRIrkidl 506 (762)
++++..||++|..+++|.+++.
T Consensus 203 s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 203 DAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CTTSCEEEEEESSCSEEEEEEH
T ss_pred ccCCCEEEEEeCCCCeEEEEEH
Confidence 7777789999999999999985
No 168
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=2.1e-10 Score=117.90 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=116.4
Q ss_pred ccCCcceEEEccCCCEEEEEeCCC---------------cEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNH---------------HRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYH 327 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~n---------------hrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd 327 (762)
.+..|.+|++|+ +|++||++..+ ++|++++.+|++...+. .+..|.+++++
T Consensus 115 ~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-------------~~~~~~~i~~~ 180 (314)
T 1pjx_A 115 RMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-------------AFQFPNGIAVR 180 (314)
T ss_dssp BCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-------------EESSEEEEEEE
T ss_pred cccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEecc-------------CCCCcceEEEe
Confidence 467899999996 78999999876 79999998888766542 23568999999
Q ss_pred ----cCCCeEEEEeCCCCeEEEEeCC-CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEE
Q 004302 328 ----KDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM 402 (762)
Q Consensus 328 ----~~~g~LYVADt~NhrIRkid~~-~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIa 402 (762)
++++.|||+|+.+++|++++.. ++.+....-.. .. ....+..|.+|+
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-----------------~~-----------~~~~~~~p~~i~ 232 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-----------------HI-----------PGTHEGGADGMD 232 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-----------------EC-----------CCCSSCEEEEEE
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-----------------EC-----------CCCCCCCCCceE
Confidence 8655899999999999999865 45432210000 00 000124699999
Q ss_pred EcCCCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceee
Q 004302 403 KSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 482 (762)
Q Consensus 403 vd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgs 482 (762)
++++|+|||++..+++|++||++++.+...+.. + ...+ ...
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-~-----------------------------------~~~~---~~i 273 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-P-----------------------------------FEKP---SNL 273 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-S-----------------------------------SSCE---EEE
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-C-----------------------------------CCCc---eeE
Confidence 999999999999999999999985543211110 0 0011 223
Q ss_pred eEEecCCEEEEEECCCCEEEEEECCC
Q 004302 483 SSIAFQNHILLCDIVGQRIMRLNRES 508 (762)
Q Consensus 483 av~~~~g~LYVADt~NhRIrkidl~~ 508 (762)
++...++.|||++..+++|.+++++.
T Consensus 274 ~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 274 HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 44344445999999999999999764
No 169
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=99.24 E-value=2.2e-11 Score=114.73 Aligned_cols=103 Identities=5% Similarity=-0.040 Sum_probs=80.6
Q ss_pred cccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHH
Q 004302 94 FNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLM 172 (762)
Q Consensus 94 ~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~ 172 (762)
++.++..+...-.+||++||+|||+||++| ++++|.|++++++|++ +.|+.|+.+. .. ++.+
T Consensus 41 ~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C-------~~~~p~l~~~~~~~~~~~~~~~vd~~~------~~----~l~~ 103 (148)
T 3p2a_A 41 INATAETLDKLLQDDLPMVIDFWAPWCGPC-------RSFAPIFAETAAERAGKVRFVKVNTEA------EP----ALST 103 (148)
T ss_dssp EECCTTTHHHHTTCSSCEEEEEECSSCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHH
T ss_pred eecCHHHHHHHHhcCCcEEEEEECCCCHHH-------HHHHHHHHHHHHHcCCceEEEEEECcC------CH----HHHH
Confidence 333334544433679999999999999876 9999999999999976 9999998875 32 2334
Q ss_pred hcCCCcceeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 173 KEYITFPILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 173 k~~itfPVl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
++++ .++|++++-++|+++.++.|..+.++|.+.|++++.+
T Consensus 104 ~~~v---------------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 144 (148)
T 3p2a_A 104 RFRI---------------RSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSR 144 (148)
T ss_dssp HTTC---------------CSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred HCCC---------------CccCEEEEEECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 4443 2567765557999999999999999999999998875
No 170
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=99.24 E-value=8.5e-12 Score=116.45 Aligned_cols=97 Identities=10% Similarity=0.011 Sum_probs=72.8
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccc
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQ 189 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~ 189 (762)
+|||+|||+||+|| ++++|.|++++++|+ +.|+.|+.+++ ......+...++.+++++
T Consensus 33 ~vlv~F~a~wC~~C-------~~~~p~l~~l~~~~~-v~~~~vd~~~~-~~~~~~d~~~~l~~~~~v------------- 90 (135)
T 3emx_A 33 DAILAVYSKTCPHC-------HRDWPQLIQASKEVD-VPIVMFIWGSL-IGERELSAARLEMNKAGV------------- 90 (135)
T ss_dssp SEEEEEEETTCHHH-------HHHHHHHHHHHTTCC-SCEEEEEECTT-CCHHHHHHHHHHHHHHTC-------------
T ss_pred cEEEEEECCcCHhh-------hHhChhHHHHHHHCC-CEEEEEECCCc-hhhhhhhhhHHHHHHcCC-------------
Confidence 99999999999977 999999999999998 99999998651 111111233444445443
Q ss_pred cccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 190 MENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 190 ~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.++|++++.++|+++.++.|..+.+.+++.+++++....
T Consensus 91 --~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~ 129 (135)
T 3emx_A 91 --EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEG 129 (135)
T ss_dssp --CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC----
T ss_pred --ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCc
Confidence 256787777799999999999999999999998887643
No 171
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=99.24 E-value=1.2e-11 Score=109.70 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=68.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||+++|+|||+||+|| +...|.|++++++|+++.++.|+.+. .. ++.+++++
T Consensus 17 ~~~~vlv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~vd~~~------~~----~l~~~~~v---------- 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVC-------DVMLRKVNYVLENYNYVEKIEILLQD------MQ----EIAGRYAV---------- 69 (105)
T ss_dssp CSSEEEEEEEESSCHHH-------HHHHHHHHHHHHTCTTEEEEEEEECC------C-----------------------
T ss_pred cCCCEEEEEeCCCCcch-------HHHHHHHHHHHHHcCCceEEEEECCC------CH----HHHHhcCC----------
Confidence 68999999999999877 99999999999999889999999876 22 11122221
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|..+.++|.+.|++++
T Consensus 70 -----~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 70 -----FTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp -----CCCCEEEEEETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred -----CCCCEEEEEeCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 25676555469999999999999999999888654
No 172
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.23 E-value=3.8e-10 Score=115.90 Aligned_cols=168 Identities=11% Similarity=0.077 Sum_probs=119.2
Q ss_pred cccCCcceEEEccCCCEEEEE-------eCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeE
Q 004302 262 LLLHFPGCISADESGNRLFLS-------DSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCL 333 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVA-------Ds~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~L 333 (762)
..|..|.+++++ .+++||++ |..+++|.++|. +|++....... . ......|.++++++++++|
T Consensus 15 ~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~-----~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 15 EDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE---V-----NGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE---E-----TTEECCEEEEEECSSSSEE
T ss_pred ccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc---c-----CCCCCCCceEEEecCCCcE
Confidence 368899999999 57899999 999999999995 77776543210 0 0123569999999743899
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEE-eecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE
Q 004302 334 YIVDSENHAIRRADMGRRVLETV-YPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII 412 (762)
Q Consensus 334 YVADt~NhrIRkid~~~g~I~Ti-aG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA 412 (762)
||++.++ .|.++|.+ +.+..+ ..... ...+..|.+|+++++|+|||+
T Consensus 86 ~v~~~~~-~l~~~d~~-g~~~~~~~~~~~------------------------------~~~~~~~~~i~~d~~g~l~v~ 133 (314)
T 1pjx_A 86 FVADMRL-GLLVVQTD-GTFEEIAKKDSE------------------------------GRRMQGCNDCAFDYEGNLWIT 133 (314)
T ss_dssp EEEETTT-EEEEEETT-SCEEECCSBCTT------------------------------SCBCBCCCEEEECTTSCEEEE
T ss_pred EEEECCC-CEEEEeCC-CCEEEEEeccCC------------------------------CccccCCcCEEECCCCCEEEE
Confidence 9999855 89999988 666555 32110 012457999999999999999
Q ss_pred ECCC---------------CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCC
Q 004302 413 NRSF---------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 477 (762)
Q Consensus 413 D~gN---------------~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~ 477 (762)
+.++ ++|++++.+ +.+..+..+. ..|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------------------------------~~~- 174 (314)
T 1pjx_A 134 APAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-------------------------------------QFP- 174 (314)
T ss_dssp ECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-------------------------------------SSE-
T ss_pred ecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-------------------------------------CCc-
Confidence 9876 689999986 5554332100 011
Q ss_pred cceeeeEE----ecCCEEEEEECCCCEEEEEECC-CCcE
Q 004302 478 AGLISSSI----AFQNHILLCDIVGQRIMRLNRE-SGVC 511 (762)
Q Consensus 478 ~~lgsav~----~~~g~LYVADt~NhRIrkidl~-~~~~ 511 (762)
.+.+++ .+++.|||+|+.+++|.+++.+ ++.+
T Consensus 175 --~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 175 --NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp --EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred --ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 224444 4444799999999999999976 4443
No 173
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.23 E-value=1.2e-08 Score=105.88 Aligned_cols=170 Identities=11% Similarity=0.157 Sum_probs=122.9
Q ss_pred CCcceEEEccCCCEEEEEeCC------CcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 265 HFPGCISADESGNRLFLSDSN------HHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~------nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
..|.++++++.++.||+++.+ .+.|.++|. +|+++..+..+ ..|.+++++++++.|||++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-------------LKPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-------------SCCCSEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-------------CCcceEEECCCCCEEEEEe
Confidence 468899999988899999977 789999998 67777666431 2489999999777899999
Q ss_pred CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEEC-C
Q 004302 338 SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINR-S 415 (762)
Q Consensus 338 t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~-g 415 (762)
..++.|.++|..++.+......+.... +....-..|++++++++|. +|+++. .
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 162 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKR-------------------------TEEVRPLQPRELVADDATNTVYISGIGK 162 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCC-------------------------CSSCCCCEEEEEEEETTTTEEEEEEESS
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCcc-------------------------ccccCCCCCceEEECCCCCEEEEEecCC
Confidence 999999999998776543333321000 0011123589999999865 999995 5
Q ss_pred CCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEE
Q 004302 416 FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCD 495 (762)
Q Consensus 416 N~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVAD 495 (762)
+++|++||..++.+...+...+ ..+ .+.+++++++.||+++
T Consensus 163 ~~~i~~~d~~~~~~~~~~~~~~------------------------------------~~~---~~~~~s~dg~~l~~~~ 203 (353)
T 3vgz_A 163 ESVIWVVDGGNIKLKTAIQNTG------------------------------------KMS---TGLALDSEGKRLYTTN 203 (353)
T ss_dssp SCEEEEEETTTTEEEEEECCCC------------------------------------TTC---CCCEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCceEEEecCCC------------------------------------Ccc---ceEEECCCCCEEEEEc
Confidence 7899999998887543321111 011 2255666777899998
Q ss_pred CCCCEEEEEECCCCcEE
Q 004302 496 IVGQRIMRLNRESGVCS 512 (762)
Q Consensus 496 t~NhRIrkidl~~~~~s 512 (762)
. +++|..+|+.++.+.
T Consensus 204 ~-~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 204 A-DGELITIDTADNKIL 219 (353)
T ss_dssp T-TSEEEEEETTTTEEE
T ss_pred C-CCeEEEEECCCCeEE
Confidence 7 679999999988765
No 174
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.22 E-value=2.4e-11 Score=111.94 Aligned_cols=88 Identities=6% Similarity=-0.077 Sum_probs=71.3
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+||++||+|||+||++| ++++|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 36 ~~~k~vvv~f~a~wC~~C-------~~~~~~l~~l~~~~~~v~~~~vd~d~------~~----~l~~~~~v--------- 89 (124)
T 1xfl_A 36 ESKTLVVVDFTASWCGPC-------RFIAPFFADLAKKLPNVLFLKVDTDE------LK----SVASDWAI--------- 89 (124)
T ss_dssp HTTCEEEEEEECTTCHHH-------HHHHHHHHHHHHHCSSEEEEEEETTT------SH----HHHHHTTC---------
T ss_pred hcCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHCCCcEEEEEECcc------CH----HHHHHcCC---------
Confidence 479999999999999877 99999999999999999999998875 22 23334433
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++.++|+++.+..| .+.++|.+.|++++
T Consensus 90 ------~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 90 ------QAMPTFMFLKEGKILDKVVG-AKKDELQSTIAKHL 123 (124)
T ss_dssp ------CSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred ------CccCEEEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence 24677777799999999999 48888888888764
No 175
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.22 E-value=4.2e-11 Score=105.56 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=72.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||++||+||++||++| ++..|.|++++++|++ +.++.|+.+. +. ++.+++++
T Consensus 18 ~~~~~lv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPC-------RIIAPVVDEIAGEYKDKLKCVKLNTDE------SP----NVASEYGI--------- 71 (107)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHHHHTC---------
T ss_pred CCCcEEEEEECCCCHhH-------HHHHHHHHHHHHHhCCceEEEEEECCC------CH----HHHHHCCC---------
Confidence 58999999999999876 9999999999999987 9999999875 32 23333333
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++.++|+++.+..|..+.++|.+.|++++
T Consensus 72 ------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 72 ------RSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp ------CSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred ------CcCCEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 24677666689999999999999999999998765
No 176
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.22 E-value=6.4e-10 Score=116.67 Aligned_cols=166 Identities=10% Similarity=-0.008 Sum_probs=112.5
Q ss_pred CcceEEEccCCCEEEEEeCCCc--EEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 266 FPGCISADESGNRLFLSDSNHH--RIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nh--rI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.|.+|++++ +++|||+|.+++ +|++++. +|++...+... ....|.|+++.+ ++.+||+|..+++
T Consensus 73 ~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-----------~~~~~~g~~~~~-~~~~~v~d~~~g~ 139 (306)
T 2p4o_A 73 KVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-----------DAIFLNGITPLS-DTQYLTADSYRGA 139 (306)
T ss_dssp EEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-----------TCSCEEEEEESS-SSEEEEEETTTTE
T ss_pred CceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-----------CccccCcccccC-CCcEEEEECCCCe
Confidence 599999996 677999997754 5998874 78877655431 123478888874 7899999999999
Q ss_pred EEEEeCCCCE--EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEE
Q 004302 343 IRRADMGRRV--LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLW 420 (762)
Q Consensus 343 IRkid~~~g~--I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~ 420 (762)
|.++|..++. +....+.+. . .. ....|..|.||..+ ++.|||+|+.+++|+
T Consensus 140 i~~~d~~~~~~~v~~~~~~~~---~------------~~-----------~~~~~~~pngis~d-g~~lyv~d~~~~~I~ 192 (306)
T 2p4o_A 140 IWLIDVVQPSGSIWLEHPMLA---R------------SN-----------SESVFPAANGLKRF-GNFLYVSNTEKMLLL 192 (306)
T ss_dssp EEEEETTTTEEEEEEECGGGS---C------------SS-----------TTCCSCSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEeCCCCcEeEEEECCccc---c------------cc-----------ccCCCCcCCCcCcC-CCEEEEEeCCCCEEE
Confidence 9999987653 333322210 0 00 01247789999332 358999999999999
Q ss_pred EEECCC-CcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 421 IMDLAS-GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 421 v~d~~~-g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
+|+.+. +.+ +..+. ... . ..| .+.+++. +|+|||||..++
T Consensus 193 ~~~~~~~g~~-----~~~~~---~~~--------------------------~-~~P---~gi~vd~-dG~l~va~~~~~ 233 (306)
T 2p4o_A 193 RIPVDSTDKP-----GEPEI---FVE--------------------------Q-TNI---DDFAFDV-EGNLYGATHIYN 233 (306)
T ss_dssp EEEBCTTSCB-----CCCEE---EEE--------------------------S-CCC---SSEEEBT-TCCEEEECBTTC
T ss_pred EEEeCCCCCC-----CccEE---Eec--------------------------c-CCC---CCeEECC-CCCEEEEeCCCC
Confidence 999864 321 11100 000 0 112 3455543 568999999999
Q ss_pred EEEEEECCCCc
Q 004302 500 RIMRLNRESGV 510 (762)
Q Consensus 500 RIrkidl~~~~ 510 (762)
+|.+|+.++..
T Consensus 234 ~V~~~~~~G~~ 244 (306)
T 2p4o_A 234 SVVRIAPDRST 244 (306)
T ss_dssp CEEEECTTCCE
T ss_pred eEEEECCCCCE
Confidence 99999998544
No 177
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.21 E-value=3.7e-11 Score=111.90 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=74.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.||++||+|||+||++| ++++|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 37 ~~k~~lv~f~a~wC~~C-------~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~----~l~~~~~v--------- 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPC-------KMVAPILDELAKEYDGQIVIYKVDTEK------EQ----ELAGAFGI--------- 90 (136)
T ss_dssp CSSCEEEEEECTTSHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHHHTTC---------
T ss_pred CCCEEEEEEECCcCHHH-------HHHHHHHHHHHHHhcCCEEEEEEeCCC------CH----HHHHHcCC---------
Confidence 47999999999999876 9999999999999986 9999999875 22 23344443
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhcc
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQE 231 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~ 231 (762)
.++|+ +++|++|+++ ...|..+.++|.+.|++++....+
T Consensus 91 ------~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~~~~ 130 (136)
T 2l5l_A 91 ------RSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLKKEG 130 (136)
T ss_dssp ------CSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTSCTT
T ss_pred ------CCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhccCC
Confidence 24564 7888999998 678999999999999988876543
No 178
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.20 E-value=3.4e-11 Score=107.23 Aligned_cols=89 Identities=7% Similarity=-0.043 Sum_probs=73.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||++||.|||+||++| ++.+|.|++++++|++ +.++.|+.+. +. ++.+++++
T Consensus 22 ~~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 75 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPC-------RQIAPSLEAIAAEYGDKIEIVKLNIDE------NP----GTAAKYGV--------- 75 (112)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHHHTTC---------
T ss_pred CCCeEEEEEECCCCHhH-------HhcCHHHHHHHHHhcCCeEEEEEEcCC------CH----HHHHhCCC---------
Confidence 58999999999999876 9999999999999976 9999999875 32 23333332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++.++|+++.+..|..+.++|.+.|++++.
T Consensus 76 ------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 76 ------MSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp ------CSSSEEEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred ------CcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 246777777899999999999999999999988764
No 179
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.20 E-value=1.2e-12 Score=127.05 Aligned_cols=115 Identities=10% Similarity=-0.089 Sum_probs=84.4
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~ 166 (762)
++.+.|.+.+ +.+++...+||+|||+|||+||+|| +.++|.|.++++.++. +.|+.|+++. +...
T Consensus 27 ~~~i~w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~C-------~~~~p~l~~~~~~~~~~~~~~~v~~d~------~~~~ 92 (164)
T 1sen_A 27 GDHIHWRTLE-DGKKEAAASGLPLMVIIHKSWCGAC-------KALKPKFAESTEISELSHNFVMVNLED------EEEP 92 (164)
T ss_dssp CTTSCBCCHH-HHHHHHHHHTCCEEEEEECTTCHHH-------HHHHHHHHTCHHHHHHHTTSEEEEEEG------GGSC
T ss_pred cccccccCHH-HHHHHHHhcCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHhhcCCeEEEEEecC------CchH
Confidence 6778887766 5677777899999999999999977 9999999998877654 7777777765 1100
Q ss_pred HHHHHHhcCCCcceeeCCCCccccccCceE-EEEcCCCCEEEEecCC----------cCHHHHHHHHHHHHHhhccC
Q 004302 167 LVEMLMKEYITFPILLSNKNFPQMENGACY-LLSKDFGNARVFHENS----------LDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~----------~~~~~L~~~l~~ll~~~~~~ 232 (762)
...++++ .-.++|+ +++|++|+++.+..|. .+.++|.+.|++++....++
T Consensus 93 ---~~~~~~~-------------~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 153 (164)
T 1sen_A 93 ---KDEDFSP-------------DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGD 153 (164)
T ss_dssp ---SCGGGCT-------------TCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGGG
T ss_pred ---HHHHhcc-------------cCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccHh
Confidence 0001110 0124675 7889999999888884 78889999999998875444
No 180
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.20 E-value=3.7e-11 Score=106.78 Aligned_cols=87 Identities=6% Similarity=-0.129 Sum_probs=71.5
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
||++||.||++||++| +..+|.|++++++|++ +.++.|+.+. .. ++.+++++
T Consensus 24 ~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v---------- 76 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPC-------KMIAPLFETLSNDYAGKVIFLKVDVDA------VA----AVAEAAGI---------- 76 (112)
T ss_dssp TCCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTSEEEEEETTT------TH----HHHHHHTC----------
T ss_pred CCeEEEEEECCCCHHH-------HHHHHHHHHHHHHcCCCeEEEEEECCc------hH----HHHHHcCC----------
Confidence 8999999999999876 9999999999999994 9999998875 22 23344443
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++.++|+++.+..|. +.++|.+.|++++.
T Consensus 77 -----~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 77 -----TAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHAA 111 (112)
T ss_dssp -----CBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred -----CcccEEEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence 246787777899999999998 88899999988763
No 181
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.83 E-value=1.5e-12 Score=119.62 Aligned_cols=111 Identities=8% Similarity=-0.015 Sum_probs=83.7
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCC-eEEEEEEcCCCccCcCCHHH
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQ-LQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~ 166 (762)
..|.+. .+.+++...+||+|||+|||+||++| ++..|.+ +++.+.+++ +.++.|+.+. + .
T Consensus 3 i~w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~------~--~ 66 (130)
T 2lst_A 3 LRWYPY-PEALALAQAHGRMVMVYFHSEHCPYC-------QQMNTFVLSDPGVSRLLEARFVVASVSVDT------P--E 66 (130)
Confidence 346666 67888889999999999999999866 9999999 999998887 8888887753 1 1
Q ss_pred HHHHHHhcCCCcceeeCCCCccccccCceE-EEEcC-CCCE--EEEecCCcCHHHHHHHHHHHHHhhccC
Q 004302 167 LVEMLMKEYITFPILLSNKNFPQMENGACY-LLSKD-FGNA--RVFHENSLDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D~~~~~~~~ygv~t-~lId~-~G~i--v~~~~G~~~~~~L~~~l~~ll~~~~~~ 232 (762)
-.++.+++++ .++|+ ++||+ +|++ +.+..|..+.++|.+.|++++.+....
T Consensus 67 ~~~~~~~~~v---------------~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~ 121 (130)
T 2lst_A 67 GQELARRYRV---------------PGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGAC 121 (130)
Confidence 1112222221 24564 77885 6999 889999999999999999998875444
No 182
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=99.19 E-value=4.5e-11 Score=110.60 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=72.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||++||+|||+||++| ++..|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 36 ~~k~vvv~F~a~wC~~C-------~~~~p~l~~l~~~~~~v~~~~vd~d~------~~----~l~~~~~v---------- 88 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPC-------KTIERPMEKIAYEFPTVKFAKVDADN------NS----EIVSKCRV---------- 88 (125)
T ss_dssp SSSCEEEEEECTTCHHH-------HHTHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTC----------
T ss_pred cCCEEEEEEECCcCHhH-------HHHHHHHHHHHHHCCCCEEEEEECCC------CH----HHHHHcCC----------
Confidence 68999999999999877 99999999999999889999999875 22 23333332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++|++++.++|+++.+..| .+.++|.+.|++++.+
T Consensus 89 -----~~~Pt~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~~ 124 (125)
T 1r26_A 89 -----LQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD 124 (125)
T ss_dssp -----CSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred -----CcccEEEEEeCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence 25677777799999999999 6888899999888753
No 183
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=99.19 E-value=3.6e-11 Score=105.42 Aligned_cols=87 Identities=5% Similarity=-0.083 Sum_probs=70.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
++|+++|+|||+||++| +..+|.+++++++|++ +.++.|+.+. +.+ ..+++++
T Consensus 18 ~~~~~lv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~----~~~~~~v--------- 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPC-------KMIAPVLEELAADYEGKADILKLDVDE------NPS----TAAKYEV--------- 71 (106)
T ss_dssp CSSEEEEEEECSBCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CHH----HHHHTTC---------
T ss_pred cCCcEEEEEECCCCHHH-------HHHhHHHHHHHHHhcCCcEEEEEECCc------CHH----HHHhCCC---------
Confidence 79999999999999876 9999999999999998 9999999876 322 2333332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++-++|+++.+..|..+.++|.+.|+++
T Consensus 72 ------~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 72 ------MSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp ------CSBSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred ------cccCEEEEEeCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 2467655556999999999999999999888764
No 184
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.19 E-value=4.3e-11 Score=107.30 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=71.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||++||+|||+||++| ++.+|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 25 ~~k~vlv~f~a~~C~~C-------~~~~~~l~~l~~~~~~v~~~~vd~~~------~~----~~~~~~~v---------- 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPC-------KRIAPFYEECSKTYTKMVFIKVDVDE------VS----EVTEKENI---------- 77 (112)
T ss_dssp HCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------TH----HHHHHTTC----------
T ss_pred cCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHcCCCEEEEEECCC------CH----HHHHHcCC----------
Confidence 68999999999999876 99999999999999999999998875 22 33344443
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++.++|+++.+..|. +.++|.+.|++++
T Consensus 78 -----~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 78 -----TSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKYA 111 (112)
T ss_dssp -----CSSSEEEEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred -----CcccEEEEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence 256777777899999999999 8888988887654
No 185
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.18 E-value=5.2e-11 Score=107.84 Aligned_cols=88 Identities=8% Similarity=-0.048 Sum_probs=72.7
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||++||+||++||++| ++.+|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 33 ~~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v---------- 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPC-------RIMAPVFADLAKKFPNAVFLKVDVDE------LK----PIAEQFSV---------- 85 (122)
T ss_dssp TTCCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTC----------
T ss_pred cCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHCCCcEEEEEECCC------CH----HHHHHcCC----------
Confidence 68999999999999876 99999999999999999999998875 22 23344443
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++.++|+++.+..|.. .++|.+.|++++.
T Consensus 86 -----~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 86 -----EAMPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp -----CSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred -----CcccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 2467777779999999999998 8899999988764
No 186
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.18 E-value=6.7e-11 Score=109.59 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=69.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||++||+|||+||++| ++.+|.|++++++|++ +.|+.|+.+. +.
T Consensus 39 ~~k~vlv~F~a~wC~~C-------~~~~p~l~~l~~~~~~~v~~~~vd~~~------~~--------------------- 84 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPA-------KMIAPILDEIADEYQGKLTVAKLNIDQ------NP--------------------- 84 (128)
T ss_dssp CSSEEEEEEECSSCHHH-------HHTHHHHHHHHHHTTTTEEEEEEETTT------CC---------------------
T ss_pred cCCEEEEEEECCCCHHH-------HHHhHHHHHHHHHhcCCeEEEEEECCC------CH---------------------
Confidence 68999999999999876 9999999999999986 9999999875 11
Q ss_pred Ccccccc---CceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMEN---GACY-LLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~y---gv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.+...| ++|+ +++ ++|+++.+..|..+.++|.+.|++++
T Consensus 85 -~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 85 -GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp -TTSGGGTCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred -HHHHHcCCCccCEEEEE-eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 123333 4565 455 89999999999999999999998876
No 187
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.18 E-value=3.6e-11 Score=107.98 Aligned_cols=89 Identities=11% Similarity=-0.023 Sum_probs=69.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||++||+|||+||++| ++++|.|++++++|++ +.|+.|+.+. +. ++.+++++
T Consensus 16 ~~~~~lv~f~a~wC~~C-------~~~~~~l~~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v--------- 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPS-------KMIAPVLEELDQEMGDKLKIVKIDVDE------NQ----ETAGKYGV--------- 69 (112)
T ss_dssp SSSEEEEEEECTTBGGG-------GGHHHHHHHHHHHHTTTCEEEEEETTT------CC----SHHHHTTC---------
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhCCCcEEEEEECCC------CH----HHHHHcCC---------
Confidence 79999999999999866 9999999999999986 9999999875 11 12233332
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++|+ +++ ++|+++.+..|..+.++|.+.+++++..
T Consensus 70 ------~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 106 (112)
T 2voc_A 70 ------MSIPTLLVL-KDGEVVETSVGFKPKEALQELVNKHLLE 106 (112)
T ss_dssp ------CSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred ------CcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 24565 556 8999999999999988888877755443
No 188
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.16 E-value=6.7e-09 Score=107.71 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=124.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC-CCCeE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS-ENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt-~NhrI 343 (762)
.|.++++++.++.+||++..++.|.++|. +|+++..+..+.+.. ........|.+++++++++.|||++. .+++|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR---TEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC---CSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc---ccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 58899999877889999999999999998 678877665432111 00112345899999998889999994 57899
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIM 422 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~ 422 (762)
.++|..++.+....... -..|.+++++++|. ||+++. ++.|++|
T Consensus 167 ~~~d~~~~~~~~~~~~~----------------------------------~~~~~~~~~s~dg~~l~~~~~-~~~i~~~ 211 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNT----------------------------------GKMSTGLALDSEGKRLYTTNA-DGELITI 211 (353)
T ss_dssp EEEETTTTEEEEEECCC----------------------------------CTTCCCCEEETTTTEEEEECT-TSEEEEE
T ss_pred EEEcCCCCceEEEecCC----------------------------------CCccceEEECCCCCEEEEEcC-CCeEEEE
Confidence 99999887665442210 01488899998865 888876 7899999
Q ss_pred ECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEE
Q 004302 423 DLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIM 502 (762)
Q Consensus 423 d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIr 502 (762)
|..++++...+.... .+......+.+++++++.||+++..++.|.
T Consensus 212 d~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 212 DTADNKILSRKKLLD-----------------------------------DGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp ETTTTEEEEEEECCC-----------------------------------SSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred ECCCCeEEEEEEcCC-----------------------------------CCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 998887543321100 001111233566677788999999999999
Q ss_pred EEECCCCcEE
Q 004302 503 RLNRESGVCS 512 (762)
Q Consensus 503 kidl~~~~~s 512 (762)
.+|+.++.+.
T Consensus 257 ~~d~~~~~~~ 266 (353)
T 3vgz_A 257 VVDTRNGNIL 266 (353)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 9999887654
No 189
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=99.16 E-value=6e-11 Score=103.63 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=71.4
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+.+||+++|.||++||++| +...|.|++++++|+++.++.|+.+. .. ++.+++++
T Consensus 15 ~~~~~~~~~v~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v------- 70 (104)
T 2vim_A 15 NENKGRLIVVDFFAQWCGPC-------RNIAPKVEALAKEIPEVEFAKVDVDQ------NE----EAAAKYSV------- 70 (104)
T ss_dssp HTTTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTC-------
T ss_pred HhcCCCeEEEEEECCCCHHH-------HHhhHHHHHHHHHCCCCEEEEEeccC------CH----HHHHHcCC-------
Confidence 34579999999999999876 99999999999999999999998875 22 23333332
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++.++|+++.+..| .+.++|.+.|+++
T Consensus 71 --------~~~Pt~~~~~~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 71 --------TAMPTFVFIKDGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp --------CSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred --------ccccEEEEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence 25677776679999999999 5888888888765
No 190
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=2.1e-11 Score=111.73 Aligned_cols=100 Identities=12% Similarity=-0.062 Sum_probs=75.7
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcC
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEY 175 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~ 175 (762)
.+.+++.+||++||+|||+||++| ++++|.+ +.+.+.+.. +.++.|+.+. ..-.++.++++
T Consensus 19 ~~~~~~~~~k~vlv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~~~ 83 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCFTTWCGPC-------KRLSKVVFKDSLVADYFNRHFVNLKMDMEK--------GEGVELRKKYG 83 (130)
T ss_dssp HHHHHHHHSSCEEEEECCTTCTHH-------HHHHHHGGGCHHHHHHHHHHSEEEEECSSS--------TTHHHHHHHTT
T ss_pred HHHHHHhcCCeEEEEEECCCCccH-------HHHHHHhcCcHHHHHHHhcCeEEEEEecCC--------cchHHHHHHcC
Confidence 455566789999999999999876 9999999 777766654 8888887653 11233445555
Q ss_pred CCcceeeCCCCccccccCce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 176 ITFPILLSNKNFPQMENGAC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 176 itfPVl~D~~~~~~~~ygv~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
+. ++| ++++|++|+++.+..|..+.++|.+.|++++...
T Consensus 84 v~---------------~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 84 VH---------------AYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123 (130)
T ss_dssp CC---------------SSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred CC---------------CCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 42 456 4788999999999999999999998888876653
No 191
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.16 E-value=1.2e-10 Score=105.72 Aligned_cols=88 Identities=8% Similarity=-0.041 Sum_probs=71.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||++||.||++||++| ++.+|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 30 ~~k~vlv~f~a~~C~~C-------~~~~~~l~~~~~~~~~~v~~~~vd~d~------~~----~l~~~~~v--------- 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPC-------KILGPRLEKMVAKQHGKVVMAKVDIDD------HT----DLAIEYEV--------- 83 (119)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTSSEEEEEETTT------TH----HHHHHTTC---------
T ss_pred CCCcEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCeEEEEEeCCC------CH----HHHHHcCC---------
Confidence 58999999999999876 9999999999999976 9999998875 22 23344443
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|..+.++|.+.|++++
T Consensus 84 ------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 84 ------SAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp ------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ------CcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 24666444489999999999999999999998876
No 192
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1e-10 Score=107.14 Aligned_cols=94 Identities=6% Similarity=-0.082 Sum_probs=74.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----C-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----Q-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
.+|++||+|||+||++| ++++|.+++++++|+ + +.|+.|+.+. .. ++.+++++.
T Consensus 24 ~~~~~lv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~l~~~~~v~---- 82 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHC-------KNLEPEWAAAASEVKEQTKGKVKLAAVDATV------NQ----VLASRYGIR---- 82 (133)
T ss_dssp SSSEEEEEEECTTCHHH-------HTHHHHHHHHHHHHHHHTTTSEEEEEEETTT------CC----HHHHHHTCC----
T ss_pred CCCeEEEEEECCCCHHH-------HhhcHHHHHHHHHHHhhcCCcEEEEEEECCC------CH----HHHHhCCCC----
Confidence 58999999999999876 999999999999986 4 9999998775 21 233333332
Q ss_pred eCCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCC
Q 004302 182 LSNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENS 233 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s 233 (762)
++|+ +++++ |+.+.+..|..+.++|.+.|.+++.+..+++
T Consensus 83 -----------~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~ 123 (133)
T 1x5d_A 83 -----------GFPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLFSDNAPPP 123 (133)
T ss_dssp -----------SSSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHHHHHSCCS
T ss_pred -----------eeCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHhhccCCCc
Confidence 4565 56665 9999999999999999999999998875553
No 193
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=99.15 E-value=5.5e-11 Score=104.26 Aligned_cols=90 Identities=9% Similarity=-0.004 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+.+||+++|.||++||++| ++..|.+++++++|+++.++.|+.+. .. ++.+++++
T Consensus 16 ~~~~~~~~~v~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v------- 71 (105)
T 3m9j_A 16 DAAGDKLVVVDFSATWCGPC-------KMIKPFFHSLSEKYSNVIFLEVDVDD------CQ----DVASESEV------- 71 (105)
T ss_dssp HHTTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHSTTSEEEEEETTT------CH----HHHHHTTC-------
T ss_pred HhcCCCeEEEEEECCCChhh-------HHHHHHHHHHHHHccCeEEEEEEhhh------hH----HHHHHcCC-------
Confidence 34579999999999999876 99999999999999999999998875 32 23333332
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|. +.++|.+.|++++
T Consensus 72 --------~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~l 105 (105)
T 3m9j_A 72 --------KSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105 (105)
T ss_dssp --------CBSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred --------CcCcEEEEEECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence 245665444899999999999 8899999888763
No 194
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=99.15 E-value=6.4e-11 Score=107.42 Aligned_cols=85 Identities=8% Similarity=-0.017 Sum_probs=68.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||++||+|||+||++| ++.+|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 29 ~~k~vvv~F~a~wC~~C-------~~~~p~l~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v---------- 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPC-------KMMQPHLTKLIQAYPDVRFVKCDVDE------SP----DIAKECEV---------- 81 (114)
T ss_dssp HCSEEEEEEECTTCHHH-------HHTHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTC----------
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHCCCCEEEEEECCC------CH----HHHHHCCC----------
Confidence 58999999999999877 99999999999999999999998875 32 23333332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.++|++++.++|+++.+..|.. .++|++.|++
T Consensus 82 -----~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~ 113 (114)
T 2oe3_A 82 -----TAMPTFVLGKDGQLIGKIIGAN-PTALEKGIKD 113 (114)
T ss_dssp -----CSBSEEEEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred -----CcccEEEEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence 2467777779999999999988 7888887764
No 195
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.15 E-value=1.2e-10 Score=101.90 Aligned_cols=88 Identities=7% Similarity=-0.006 Sum_probs=72.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.||+++|.||++||++| +...|.|++++++|++ +.++.|+.+. .. ++.+++++
T Consensus 17 ~~~~~~v~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 70 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPC-------KLIAPVIDELAKEYSGKIAVYKLNTDE------AP----GIATQYNI--------- 70 (105)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHHHTTC---------
T ss_pred CCCcEEEEEECCCChHH-------HHHHHHHHHHHHHhcCceEEEEEcCcc------hH----HHHHhCCC---------
Confidence 58999999999999876 9999999999999987 9999998875 22 23344443
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++.++|+++.+..|..+.++|.+.|++++
T Consensus 71 ------~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l 105 (105)
T 1fb6_A 71 ------RSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105 (105)
T ss_dssp ------CSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred ------CcccEEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence 24677777689999999999999999999988763
No 196
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.15 E-value=1.1e-10 Score=102.64 Aligned_cols=88 Identities=9% Similarity=-0.062 Sum_probs=71.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+++|+|||+||++| +..+|.|++++++|++ +.++.|+.+. .. ++.+++++
T Consensus 20 ~~~~~lv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~i--------- 73 (109)
T 3tco_A 20 NNKLVLVDCWAEWCAPC-------HLYEPIYKKVAEKYKGKAVFGRLNVDE------NQ----KIADKYSV--------- 73 (109)
T ss_dssp HSSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTSEEEEEETTT------CH----HHHHHTTC---------
T ss_pred cCCeEEEEEECCCCHHH-------HhhhHHHHHHHHHhCCCceEEEEcccc------CH----HHHHhcCc---------
Confidence 58999999999999876 9999999999999996 9999998875 32 23334433
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++=++|+++.+..|..+.++|.+.|++++
T Consensus 74 ------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 74 ------LNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp ------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred ------ccCCEEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 25676433399999999999999999999998875
No 197
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.1e-10 Score=121.77 Aligned_cols=91 Identities=3% Similarity=-0.082 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.+.+||+|||+|||+||+|| +.++|.++++.++|++ +.|+.|+++. .. ++.+++++
T Consensus 22 ~~~~~~~v~v~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v------ 78 (287)
T 3qou_A 22 EQSMTTPVLFYFWSERSQHC-------LQLTPILESLAAQYNGQFILAKLDCDA------EQ----MIAAQFGL------ 78 (287)
T ss_dssp TTTTTSCEEEEEECTTCTTT-------TTTHHHHHHHHHHHTSSSEEEEEETTT------CH----HHHHTTTC------
T ss_pred HhcCCCeEEEEEECCCChHH-------HHHHHHHHHHHHHcCCCeEEEEEeCcc------CH----HHHHHcCC------
Confidence 34569999999999999866 9999999999999998 9999999876 22 33344443
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++||+++-++|+++.+..|..+.+.+.+.|...+
T Consensus 79 ---------~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 79 ---------RAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp ---------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred ---------CCCCeEEEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 25676544479999999999999888888887654
No 198
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=99.14 E-value=1.5e-10 Score=102.52 Aligned_cols=88 Identities=9% Similarity=-0.048 Sum_probs=68.6
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+||++||+|||+||++| ++.+|.|++++++|+++.++.|+.+. .. ++.+++++
T Consensus 19 ~~~~~v~v~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v--------- 72 (107)
T 1gh2_A 19 AGSRLAVVKFTMRGCGPC-------LRIAPAFSSMSNKYPQAVFLEVDVHQ------CQ----GTAATNNI--------- 72 (107)
T ss_dssp TTTSCEEEEEECSSCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------SH----HHHHHTTC---------
T ss_pred CCCCEEEEEEECCCChhh-------HHHHHHHHHHHHHCCCcEEEEEECcc------CH----HHHHhcCC---------
Confidence 368999999999999877 99999999999999889999999875 22 23333432
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|... ++|.+.|++++
T Consensus 73 ------~~~Pt~~~~~~G~~~~~~~G~~~-~~l~~~l~~~l 106 (107)
T 1gh2_A 73 ------SATPTFQFFRNKVRIDQYQGADA-VGLEEKIKQHL 106 (107)
T ss_dssp ------CSSSEEEEEETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred ------CcccEEEEEECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence 24677655589999999999554 55888887765
No 199
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.14 E-value=1.9e-10 Score=102.20 Aligned_cols=90 Identities=9% Similarity=-0.055 Sum_probs=72.0
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
..+||++||.||++||++| +...|.|+++.++|+++.++.|+.+. ..+ +.+++++
T Consensus 23 ~~~~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~v~~~~v~~~~------~~~----~~~~~~v-------- 77 (113)
T 1ti3_A 23 KGSQKLIVVDFTASWCPPC-------KMIAPIFAELAKKFPNVTFLKVDVDE------LKA----VAEEWNV-------- 77 (113)
T ss_dssp TTSSSEEEEEEECSSCHHH-------HHHHHHHHHHHHHCSSEEEEEEETTT------CHH----HHHHHHC--------
T ss_pred hhcCCeEEEEEECCCCHHH-------HHHHHHHHHHHHhCCCcEEEEEEccc------cHH----HHHhCCC--------
Confidence 3579999999999999876 99999999999999999999998875 322 2233322
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++-++|+++.++.| .+.++|.+.|++++.
T Consensus 78 -------~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 78 -------EAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp -------SSTTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred -------CcccEEEEEeCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 35677666689999999999 578899999988774
No 200
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=1.1e-09 Score=114.13 Aligned_cols=166 Identities=15% Similarity=0.211 Sum_probs=117.4
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC------
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS------ 338 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt------ 338 (762)
..|.++++|+ +|+|||++.++++|.+++.+|++........ ...++.|..+++++ ++.|||+|.
T Consensus 86 ~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~i~~d~-dG~l~~td~~~g~~~ 155 (305)
T 3dr2_A 86 AFTNGNAVDA-QQRLVHCEHGRRAITRSDADGQAHLLVGRYA--------GKRLNSPNDLIVAR-DGAIWFTDPPFGLRK 155 (305)
T ss_dssp SCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECEET--------TEECSCCCCEEECT-TSCEEEECCSGGGSC
T ss_pred CccceeeECC-CCCEEEEECCCCEEEEECCCCCEEEEEeccC--------CCccCCCCCEEECC-CCCEEEeCcCCCccc
Confidence 4689999996 7889999999999999999998776653211 13578899999997 789999984
Q ss_pred -----------CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC
Q 004302 339 -----------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD 407 (762)
Q Consensus 339 -----------~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG 407 (762)
..+.|.++|+.++.+..+. + +..|.|++++++|
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~----------------------------------~~~p~gl~~spdg 199 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA--D----------------------------------LDHPNGLAFSPDE 199 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E----------------------------------ESSEEEEEECTTS
T ss_pred cccccccccccCCCeEEEEcCCCCcEEEEe--c----------------------------------CCCCcceEEcCCC
Confidence 1357888887666555543 1 3468999999998
Q ss_pred c-EEEEECCC-----CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCccee
Q 004302 408 N-LLIINRSF-----ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLI 481 (762)
Q Consensus 408 ~-LYVAD~gN-----~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lg 481 (762)
. |||+|+.+ ++|++|+.+++.+... +.. .. . ..+.| .+
T Consensus 200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~-----~~~---~~----------------------~---~~~~p---dg 243 (305)
T 3dr2_A 200 QTLYVSQTPEQGHGSVEITAFAWRDGALHDR-----RHF---AS----------------------V---PDGLP---DG 243 (305)
T ss_dssp SEEEEEECCC---CCCEEEEEEEETTEEEEE-----EEE---EC----------------------C---SSSCC---CS
T ss_pred CEEEEEecCCcCCCCCEEEEEEecCCCccCC-----eEE---EE----------------------C---CCCCC---Ce
Confidence 6 99999984 8999999765432110 000 00 0 01122 23
Q ss_pred eeEEecCCEEEEEECCCCEEEEEECCCCcEEEEe
Q 004302 482 SSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 482 sav~~~~g~LYVADt~NhRIrkidl~~~~~sti~ 515 (762)
..++ .+|+|||++ ++.|.+++.++..+.++.
T Consensus 244 i~~d-~~G~lwv~~--~~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 244 FCVD-RGGWLWSSS--GTGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp EEEC-TTSCEEECC--SSEEEEECTTSCEEEEEE
T ss_pred EEEC-CCCCEEEec--CCcEEEECCCCCEEEEEE
Confidence 4443 456799998 457999999887776654
No 201
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.13 E-value=4.7e-11 Score=104.87 Aligned_cols=87 Identities=8% Similarity=-0.061 Sum_probs=69.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+++|.||++||++| ++++|.|++++++|++ +.++.|+.+. +. ++.+++++
T Consensus 16 ~~~~~~v~f~~~~C~~C-------~~~~~~l~~~~~~~~~~v~~~~v~~~~------~~----~~~~~~~v--------- 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPC-------RMMAPVLEEFAEAHADKVTVAKLNVDE------NP----ETTSQFGI--------- 69 (105)
T ss_dssp SSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHSTTTCEEEEEETTT------CH----HHHHHTTC---------
T ss_pred CCCcEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCcEEEEEECcC------CH----HHHHHcCC---------
Confidence 58999999999999876 9999999999999987 9999999875 32 23334433
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|+ +++ ++|+++.+..|..+.++|.+.|++++
T Consensus 70 ------~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 70 ------MSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp ------CSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred ------ccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHh
Confidence 24565 445 89999999999999888888877653
No 202
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=99.13 E-value=1.5e-10 Score=110.17 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=72.2
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+||++||+|||+||++| ++++|.|++++++|+++.|+.|+.+. .. ++.+++++.
T Consensus 30 ~~~~~vvv~F~a~wC~~C-------~~~~p~l~~l~~~~~~v~~~~vd~~~------~~----~l~~~~~v~-------- 84 (153)
T 2wz9_A 30 KAKSLLVVHFWAPWAPQC-------AQMNEVMAELAKELPQVSFVKLEAEG------VP----EVSEKYEIS-------- 84 (153)
T ss_dssp TTTSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------SH----HHHHHTTCC--------
T ss_pred cCCCeEEEEEECCCCHhH-------HHHHHHHHHHHHHcCCeEEEEEECCC------CH----HHHHHcCCC--------
Confidence 469999999999999877 99999999999999889999999875 22 233444432
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
++|+ ++++ +|+++.+..|. +.++|.+.|++++....
T Consensus 85 -------~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l~~~~ 121 (153)
T 2wz9_A 85 -------SVPTFLFFK-NSQKIDRLDGA-HAPELTKKVQRHASSGS 121 (153)
T ss_dssp -------SSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHSCTTS
T ss_pred -------CCCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHHHhcccc
Confidence 4565 5667 99999999995 66788888888877643
No 203
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.13 E-value=1.3e-10 Score=110.04 Aligned_cols=88 Identities=7% Similarity=-0.118 Sum_probs=68.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.||+|||+|||+||+|| +.++|.|++++++|++ +.|+.|+.++ ..
T Consensus 22 ~~k~vlv~F~a~wC~~C-------~~~~p~l~~l~~~~~~~v~~~~vd~d~------~~--------------------- 67 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTC-------MKMDEVLYSIAEKVKNFAVIYLVDITE------VP--------------------- 67 (142)
T ss_dssp SSSEEEEEEECTTSHHH-------HHHHHHHHHHHHHHTTTEEEEEEETTT------CC---------------------
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhCCCeEEEEEcccc------CH---------------------
Confidence 58999999999999977 9999999999999976 9999999875 11
Q ss_pred Ccccccc---CceEEEEcCCCCEEEE---------ecCCcC-HHHHHHHHHHHHHhh
Q 004302 186 NFPQMEN---GACYLLSKDFGNARVF---------HENSLD-IGMLNKAVEELIMQQ 229 (762)
Q Consensus 186 ~~~~~~y---gv~t~lId~~G~iv~~---------~~G~~~-~~~L~~~l~~ll~~~ 229 (762)
.+...| ++|++++-++|+++.. ..|..+ .++|.+.|+++++.+
T Consensus 68 -~~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 68 -DFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp -TTTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHcCCCCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 123334 4666554468998874 445554 788999999988765
No 204
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.12 E-value=1.6e-10 Score=102.05 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=70.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+++|+||++||++| +...|.|++++++|++ +.++.|+.+. +. ++.+++++
T Consensus 19 ~~~~~~v~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 72 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPC-------KMIAPILDEIADEYQGKLTVAKLNIDQ------NP----GTAPKYGI--------- 72 (108)
T ss_dssp CSSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTEEEEEEETTT------CT----THHHHTTC---------
T ss_pred cCCeEEEEEECCCCHhH-------HHHHHHHHHHHHHhCCCcEEEEEECCC------CH----HHHHHcCC---------
Confidence 68999999999999876 9999999999999986 9999998875 21 12233332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++=++|+++.+..|..+.++|.+.|++++
T Consensus 73 ------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 73 ------RGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp ------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ------cccCEEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 24665433389999999999999999999998876
No 205
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.12 E-value=1.2e-09 Score=118.25 Aligned_cols=125 Identities=11% Similarity=0.081 Sum_probs=88.7
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecC---CCeEEEEeCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD---DDCLYIVDSE 339 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~---~g~LYVADt~ 339 (762)
.|..|++|++++ +|+|||+|.. ++|++++ +|+...+.... -+ ...+..|.||+++++ ++.|||+++.
T Consensus 29 ~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~g~~~~~~~~~-v~------~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 29 GLEVPWALAFLP-DGGMLIAERP-GRIRLFR-EGRLSTYAELS-VY------HRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CCSCEEEEEECT-TSCEEEEETT-TEEEEEE-TTEEEEEEECC-CC------CSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-CCCccEeecce-Ee------ecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 589999999996 6789999987 8999999 77754443321 00 112467999999986 6899999987
Q ss_pred C-----CeEEEEeCCCCEEE---EEee-cCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEE
Q 004302 340 N-----HAIRRADMGRRVLE---TVYP-TSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLL 410 (762)
Q Consensus 340 N-----hrIRkid~~~g~I~---TiaG-~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LY 410 (762)
+ ++|.+++.+++.+. ++.. .. ........|.+|++++||+||
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p-----------------------------~~~~~~h~~~~l~~~pdG~Ly 149 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIP-----------------------------ARPHGLHSGGRIAFGPDGMLY 149 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEEC-----------------------------CCTTCCCCCCCEEECTTSCEE
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCC-----------------------------CCCCCCcCCceEEECCCCCEE
Confidence 5 89999998755321 2211 10 001124578999999999999
Q ss_pred EEECC-------------CCEEEEEECCC
Q 004302 411 IINRS-------------FETLWIMDLAS 426 (762)
Q Consensus 411 VAD~g-------------N~rI~v~d~~~ 426 (762)
|++-. +++|+++++++
T Consensus 150 v~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 150 VTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp EECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred EEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 99732 25788887754
No 206
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.12 E-value=1.4e-10 Score=108.78 Aligned_cols=91 Identities=8% Similarity=-0.100 Sum_probs=75.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+|++||+|||+||++| +..+|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 23 ~~~~vlv~F~a~wC~~C-------~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~----~l~~~~~v--------- 76 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYC-------KAMEPYFEEYAKEYGSSAVFGRINIAT------NP----WTAEKYGV--------- 76 (140)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTSEEEEEETTT------CH----HHHHHHTC---------
T ss_pred CCCcEEEEEECCCChhH-------HHHHHHHHHHHHHhCCceEEEEEECCc------CH----hHHHHCCC---------
Confidence 48999999999999877 9999999999999998 9999999876 32 23333333
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.++|++++-++|+++.+..|..+.++|.+.|++++...
T Consensus 77 ------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 114 (140)
T 3hz4_A 77 ------QGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHG 114 (140)
T ss_dssp ------CEESEEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ------CcCCEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccc
Confidence 24567666689999999999999999999999999864
No 207
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=99.12 E-value=3e-11 Score=112.72 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=69.0
Q ss_pred ccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 102 HFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
.+.+.+||+|||+|||+||+|| +++.|.|+++.++| ++.++.|+.+. .. ++.+++++
T Consensus 34 ~l~~~~~k~vvv~F~a~wC~~C-------~~~~p~l~~l~~~~-~v~~~~vd~~~------~~----~l~~~~~v----- 90 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFGAVWCKPC-------NKIKEYFKNQLNYY-YVTLVDIDVDI------HP----KLNDQHNI----- 90 (133)
T ss_dssp HHTC-CCSEEEEEEECTTCHHH-------HHTHHHHHGGGGTE-ECEEEEEETTT------CH----HHHHHTTC-----
T ss_pred HHHhcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHhc-CEEEEEEeccc------hH----HHHHhcCC-----
Confidence 4567789999999999999877 99999999998887 68888888765 22 23333433
Q ss_pred eCCCCccccccCceE-EEE-cCCCC--EEEEecCCcCHHHHHHHHHHHHHh
Q 004302 182 LSNKNFPQMENGACY-LLS-KDFGN--ARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t-~lI-d~~G~--iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++|+ +++ +++|+ ++.+..|. +.++|.+.|++++.+
T Consensus 91 ----------~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~ 130 (133)
T 3cxg_A 91 ----------KALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLE 130 (133)
T ss_dssp ----------CSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEE
T ss_pred ----------CCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHh
Confidence 24565 444 34555 89999998 788899999887654
No 208
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=99.12 E-value=1.1e-10 Score=105.17 Aligned_cols=88 Identities=8% Similarity=-0.047 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+.+||++||+|||+||++| ++..|.+++++++| ++.++.|+.+. .. ++.+++++
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C-------~~~~~~~~~~~~~~-~~~~~~vd~~~------~~----~~~~~~~v------- 83 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPC-------KTIAPLFKELSEKY-DAIFVKVDVDK------LE----ETARKYNI------- 83 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHH-------HHHHHHHHHHHTTS-SSEEEEEETTT------SH----HHHHHTTC-------
T ss_pred HhCCCCEEEEEEECCCCHhH-------HHHhHHHHHHHHHc-CcEEEEEECCc------cH----HHHHHcCC-------
Confidence 44579999999999999876 99999999999999 89999998875 22 23334433
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++.++|+++.+..| .+.++|.+.|+++
T Consensus 84 --------~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 84 --------SAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp --------CSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred --------CccceEEEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence 25678777789999999999 5778888888765
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=9.8e-11 Score=118.56 Aligned_cols=107 Identities=10% Similarity=0.024 Sum_probs=81.0
Q ss_pred CceeecccCCCccccC-CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHH
Q 004302 89 PHHLWFNIVEDNIHFF-KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 89 ~~~~w~n~~g~~v~Ls-d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~ 166 (762)
++......+.+++.-. --+||+|||+|||+||+|| +.++|.|++++++|++ +.|+.|+.+. ..
T Consensus 10 ~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C-------~~~~p~l~~l~~~~~~~v~~~~vd~d~------~~-- 74 (222)
T 3dxb_A 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPC-------KMIAPILDEIADEYQGKLTVAKLNIDQ------NP-- 74 (222)
T ss_dssp CSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CT--
T ss_pred CCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHH-------HHHHHHHHHHHHHhcCCcEEEEEECCC------CH--
Confidence 3344444444454321 2268999999999999877 9999999999999998 9999999875 11
Q ss_pred HHHHHHhcCCCcceeeCCCCcccccc---CceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 167 LVEMLMKEYITFPILLSNKNFPQMEN---GACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D~~~~~~~~y---gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.+...| ++|++++-++|+++.+..|..+.++|.+.|++++....
T Consensus 75 --------------------~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 121 (222)
T 3dxb_A 75 --------------------GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSA 121 (222)
T ss_dssp --------------------TTGGGGTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred --------------------HHHHHcCCCcCCEEEEEECCeEEEEeccccChHHHHHHHHhhccccc
Confidence 122333 56776666799999999999999999999999886543
No 210
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.12 E-value=3.4e-09 Score=110.35 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=116.8
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN- 340 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N- 340 (762)
.+..|.++++++ +++||+++..++.|+++|.+ |++...... .-..|.+|++++ ++.|||++..+
T Consensus 43 ~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~------------~~~~~~~i~~~~-dg~l~v~~~~~~ 108 (333)
T 2dg1_A 43 KGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVS------------HKANPAAIKIHK-DGRLFVCYLGDF 108 (333)
T ss_dssp SCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEEC------------SSSSEEEEEECT-TSCEEEEECTTS
T ss_pred cCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeC------------CCCCcceEEECC-CCcEEEEeCCCC
Confidence 456789999995 77899999999999999985 566554321 114599999997 67899999877
Q ss_pred ---CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECC--
Q 004302 341 ---HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS-- 415 (762)
Q Consensus 341 ---hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~g-- 415 (762)
+.|.++|.+++.+..+.... .....|.+|+++++|.+||++..
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~--------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDL--------------------------------STAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSS--------------------------------SSCCCEEEEEECTTSCEEEEECCCB
T ss_pred CCCceEEEEeCCCCEEEEEEccC--------------------------------ccCCcccceEECCCCCEEEEecccc
Confidence 79999998877665442110 00236999999999999999975
Q ss_pred ----CCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEE
Q 004302 416 ----FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHI 491 (762)
Q Consensus 416 ----N~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~L 491 (762)
+.+|++++.+++.+..+..+. ..+ .+.++++++..|
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------~~~---~~i~~~~dg~~l 196 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQNI-------------------------------------SVA---NGIALSTDEKVL 196 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEEE-------------------------------------SSE---EEEEECTTSSEE
T ss_pred ccCCCceEEEEeCCCCEEEEeecCC-------------------------------------Ccc---cceEECCCCCEE
Confidence 578999998877665442100 001 224444555579
Q ss_pred EEEECCCCEEEEEECC
Q 004302 492 LLCDIVGQRIMRLNRE 507 (762)
Q Consensus 492 YVADt~NhRIrkidl~ 507 (762)
||+++.+++|.+++..
T Consensus 197 ~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 197 WVTETTANRLHRIALE 212 (333)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCeEEEEEec
Confidence 9999999999999985
No 211
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.4e-10 Score=103.46 Aligned_cols=90 Identities=10% Similarity=-0.040 Sum_probs=68.3
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHH--CCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQS--FPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~--y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+||++||+|||+||++| ++.+|.|++++++ ++++.++.|+.+. .. ++.+++++
T Consensus 19 ~~~~~~~v~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v------- 74 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPC-------KALKQVFEAISNEPSNSNVSFLSIDADE------NS----EISELFEI------- 74 (112)
T ss_dssp TTTCCEEEEEECCC--CH-------HHHHHHHHHHHHCGGGTTSEEEEEETTT------CH----HHHHHTTC-------
T ss_pred cCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHhcCCCCEEEEEEeccc------CH----HHHHHcCC-------
Confidence 468999999999999866 9999999999999 5669999999875 22 23333332
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++|++++-++|+++.+..|.. .++|.+.|++++..
T Consensus 75 --------~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 75 --------SAVPYFIIIHKGTILKELSGAD-PKEYVSLLEDCKNS 110 (112)
T ss_dssp --------CSSSEEEEEETTEEEEEECSCC-HHHHHHHHHHHHHH
T ss_pred --------CcccEEEEEECCEEEEEecCCC-HHHHHHHHHHHHhh
Confidence 2467766558999999999984 45699998888764
No 212
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=99.12 E-value=7.3e-11 Score=106.77 Aligned_cols=90 Identities=6% Similarity=-0.142 Sum_probs=67.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+|+++||+|||+||+|| ++++|.|++++++|+. .|+.++++. ..+.+...++.+++++.
T Consensus 28 ~~~~~~v~f~a~wC~~C-------~~~~p~l~~~~~~~~~-~v~~~~~~~----~~~~~~~~~~~~~~~i~--------- 86 (118)
T 1zma_A 28 KKETATFFIGRKTCPYC-------RKFAGTLSGVVAETKA-HIYFINSEE----PSQLNDLQAFRSRYGIP--------- 86 (118)
T ss_dssp TTCCEEEEEECTTCHHH-------HHHHHHHHHHHHHHCC-CCEEEETTC----GGGHHHHHHHHHHHTCC---------
T ss_pred CCCeEEEEEECCCCccH-------HHHHHHHHHHHHhcCC-eEEEEECCC----cCcHHHHHHHHHHcCCC---------
Confidence 58899999999999877 9999999999998874 334445543 12345556666776653
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
++|++++-++|+++.+..|..+.++|.+.|+
T Consensus 87 ------~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 87 ------TVPGFVHITDGQINVRCDSSMSAQEIKDFAG 117 (118)
T ss_dssp ------SSCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred ------CCCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence 4676554469999999999999888887764
No 213
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=99.12 E-value=3.2e-10 Score=100.75 Aligned_cols=89 Identities=8% Similarity=-0.043 Sum_probs=72.3
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
-+||++||.||++||++| ++..|.|+++.++|++ +.|+.|+.+. .. ++.+++++
T Consensus 23 ~~~~~~lv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~v~~~~v~~~~------~~----~~~~~~~v-------- 77 (115)
T 1thx_A 23 KAEQPVLVYFWASWCGPC-------QLMSPLINLAANTYSDRLKVVKLEIDP------NP----TTVKKYKV-------- 77 (115)
T ss_dssp TCSSCEEEEEECTTCTTH-------HHHHHHHHHHHHHTTTTCEEEEEESTT------CH----HHHHHTTC--------
T ss_pred cCCceEEEEEECCCCHHH-------HHhHHHHHHHHHHhCCcEEEEEEEcCC------CH----HHHHHcCC--------
Confidence 368999999999999866 9999999999999986 9999999875 22 23344443
Q ss_pred CCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 185 KNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 185 ~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|+ +++ ++|+++.+..|..+.++|.+.|++++.
T Consensus 78 -------~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 78 -------EGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp -------CSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred -------CceeEEEEE-cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 24565 455 899999999999999999999998765
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.11 E-value=1.5e-09 Score=112.90 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=94.8
Q ss_pred ccCCcceEEEccCCCEEEEEeC-----------CCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDS-----------NHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDD 331 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs-----------~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g 331 (762)
.++.|.++++|+ +|++|+++. ..++|++++.+|++..... .+..|.||++++++.
T Consensus 96 ~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-------------~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 96 KNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-------------QVDISNGLDWSLDHK 161 (297)
T ss_dssp SSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-------------EESBEEEEEECTTSC
T ss_pred CCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-------------ccccccceEEcCCCC
Confidence 367799999996 678999984 3468999999888766542 245699999999777
Q ss_pred eEEEEeCCCCeEEEEeC--CCCEEEE---EeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC
Q 004302 332 CLYIVDSENHAIRRADM--GRRVLET---VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED 406 (762)
Q Consensus 332 ~LYVADt~NhrIRkid~--~~g~I~T---iaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d 406 (762)
.|||+|+.+++|.+++. .++.+.. ++... .....|.|+++|++
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~--------------------------------~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE--------------------------------KEEQIPDGMCIDAE 209 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC--------------------------------GGGCEEEEEEEBTT
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECC--------------------------------CCCCCCCeeEECCC
Confidence 89999999999999985 4554421 11000 00236999999999
Q ss_pred CcEEEEECCCCEEEEEECCCCcEE
Q 004302 407 DNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
|+|||++.++++|++||+++|++.
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEE
T ss_pred CCEEEEEcCCCEEEEEcCCCceEE
Confidence 999999999999999999877654
No 215
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=2.9e-10 Score=104.07 Aligned_cols=91 Identities=7% Similarity=-0.160 Sum_probs=73.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+|++||+|||+||++| ++++|.|++++++|++ +.|+.|+.+. .. ++.+++++.
T Consensus 34 ~~~~~lv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~l~~~~~v~-------- 88 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHC-------QRLTPEWKKAATALKDVVKVGAVNADK------HQ----SLGGQYGVQ-------- 88 (130)
T ss_dssp CSSCEEEEEECTTCSTT-------GGGHHHHHHHHHHTTTTSEEEEEETTT------CH----HHHHHHTCC--------
T ss_pred CCCeEEEEEECCCCHHH-------HhhCHHHHHHHHHhcCceEEEEEeCCC------CH----HHHHHcCCC--------
Confidence 58999999999999866 9999999999999998 9999998875 22 233444432
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++|+ +++++.|+++....|..+.++|.+.|.+.+.+.
T Consensus 89 -------~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~ 126 (130)
T 2dml_A 89 -------GFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSG 126 (130)
T ss_dssp -------SSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred -------ccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence 4564 677888886788899999999999999888763
No 216
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.11 E-value=1.5e-10 Score=112.58 Aligned_cols=88 Identities=5% Similarity=-0.170 Sum_probs=71.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
..|+|||+|||+||+|| +..-|.|++|.++|++ +.|+-|++++ .
T Consensus 40 ~~k~VVVdF~A~WCgPC-------k~m~PvleelA~e~~~~v~f~kVDVDe----------------------------~ 84 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDC-------MKMDELLYKVADDIKNFCVIYLVDITE----------------------------V 84 (160)
T ss_dssp SSSEEEEEEECTTSHHH-------HHHHHHHHHHHHHHTTTEEEEEEETTT----------------------------C
T ss_pred CCCEEEEEEECCCChhH-------HHHHHHHHHHHHHccCCcEEEEEECCC----------------------------C
Confidence 46899999999999977 9999999999999987 9999999886 1
Q ss_pred Ccccccc---CceEEEEcCCCCEE--E-------EecCCcC-HHHHHHHHHHHHHhh
Q 004302 186 NFPQMEN---GACYLLSKDFGNAR--V-------FHENSLD-IGMLNKAVEELIMQQ 229 (762)
Q Consensus 186 ~~~~~~y---gv~t~lId~~G~iv--~-------~~~G~~~-~~~L~~~l~~ll~~~ 229 (762)
..+...| .+|||++=++|+.+ . +..|... .++|.+.|+++++.+
T Consensus 85 ~e~a~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 85 PDFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp CTTTTTTTCCSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 1223444 46788666788887 4 7889877 889999999988765
No 217
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=99.10 E-value=1.1e-10 Score=112.17 Aligned_cols=92 Identities=8% Similarity=-0.062 Sum_probs=73.0
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
-+||++||+|||+||+|| +.+.|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 62 ~~~~~vlv~F~a~wC~~C-------~~~~p~l~~la~~~~~~v~~~~vd~~~------~~----~l~~~~~i-------- 116 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPC-------RQMAPQFQAAAATLAGQVRLAKIDTQA------HP----AVAGRHRI-------- 116 (155)
T ss_dssp TCSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTCEEEEEETTT------ST----HHHHHTTC--------
T ss_pred hCCCcEEEEEECCCCHHH-------HHHHHHHHHHHHHccCCEEEEEEeCCc------cH----HHHHHcCC--------
Confidence 368999999999999877 9999999999999986 9999999875 21 23334433
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.++|++++-++|+++.+..|..+.++|.+.|++++...
T Consensus 117 -------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 154 (155)
T 2ppt_A 117 -------QGIPAFILFHKGRELARAAGARPASELVGFVRGKLGAR 154 (155)
T ss_dssp -------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC--
T ss_pred -------CcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHhccC
Confidence 24566544489999999999999999999999887653
No 218
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.10 E-value=2.3e-10 Score=102.33 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=72.1
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+||++||.||++||++| ++..|.|++++++|+++.++.|+.+. .. ++.+++++
T Consensus 26 ~~~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 79 (118)
T 2vm1_A 26 DTGKLVIIDFTASWCGPC-------RVIAPVFAEYAKKFPGAIFLKVDVDE------LK----DVAEAYNV--------- 79 (118)
T ss_dssp HHTCCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------SH----HHHHHTTC---------
T ss_pred cCCCEEEEEEECCCCHhH-------HHHhHHHHHHHHHCCCcEEEEEEccc------CH----HHHHHcCC---------
Confidence 358999999999999876 99999999999999999999998875 22 23334433
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.++|++++-++|+++.+..| .+.++|.+.|++++..+
T Consensus 80 ------~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~~ 116 (118)
T 2vm1_A 80 ------EAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALMGSA 116 (118)
T ss_dssp ------CSBSEEEEEETTEEEEEEES-CCHHHHHHHHHHHHC--
T ss_pred ------CcCcEEEEEeCCeEEEEecC-CCHHHHHHHHHHHhccc
Confidence 24677666689999999999 57889999999887653
No 219
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=99.10 E-value=3.1e-10 Score=98.44 Aligned_cols=89 Identities=6% Similarity=-0.027 Sum_probs=72.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||++||.||++||++| +..+|.+++++++|+++.++.|+.+. .. ++.+++++
T Consensus 15 ~~~~~~v~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v---------- 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPC-------LILAPIIEELAEDYPQVGFGKLNSDE------NP----DIAARYGV---------- 67 (104)
T ss_dssp HSSEEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTC----------
T ss_pred cCCcEEEEEECCCChhH-------HHHhHHHHHHHHHcCCceEEEEECCC------CH----HHHHhCCc----------
Confidence 68999999999999876 99999999999999999999998875 22 23334433
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++-++|+++....|..+.++|.+.|++++.
T Consensus 68 -----~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 68 -----MSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp -----CSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred -----cccCEEEEEECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 245664444899999999999999999999998874
No 220
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.09 E-value=1.9e-09 Score=117.04 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=87.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecC---CCeEEEEeCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD---DDCLYIVDSE 339 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~---~g~LYVADt~ 339 (762)
.|..|++|++++ +|+|||+|.. ++|++++.+|+ ..+.+.. -+ ......|.||+++++ ++.|||+++.
T Consensus 27 ~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~-~~~~~~~-v~------~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 27 DLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGK-KLVASFD-VA------NVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp SCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCE-EEEEECC-CC------CSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCc-eEeeccc-ee------ecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 589999999997 7899999987 99999998887 3332211 00 012356999999986 6899999974
Q ss_pred ---C----CeEEEEeCCCC--E---EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC
Q 004302 340 ---N----HAIRRADMGRR--V---LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD 407 (762)
Q Consensus 340 ---N----hrIRkid~~~g--~---I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG 407 (762)
+ ++|.+++.+++ . ..++.- + .. ......|.+|++++||
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~-~------------------~~-----------~~~~h~~~~l~~~pDG 146 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLID-G------------------IP-----------GAYIHNGGRIRFGPDG 146 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEE-E------------------EE-----------CCSSCCCCCEEECTTS
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEE-c------------------CC-----------CCCCcCCceEEECCCC
Confidence 4 79999987654 1 122210 0 00 0124468999999999
Q ss_pred cEEEEECC-------------CCEEEEEECCC
Q 004302 408 NLLIINRS-------------FETLWIMDLAS 426 (762)
Q Consensus 408 ~LYVAD~g-------------N~rI~v~d~~~ 426 (762)
+|||++-. +++|+++++++
T Consensus 147 ~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 147 MLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp CEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred cEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 99999532 35788887754
No 221
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.09 E-value=3.4e-10 Score=100.21 Aligned_cols=89 Identities=4% Similarity=0.011 Sum_probs=72.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
++|++||.|||+||++| +...|.+++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 21 ~~~~vlv~f~a~~C~~C-------~~~~~~~~~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v--------- 74 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVC-------QKVTPVLEELRLNYEESFGFYYVDVEE------EK----TLFQRFSL--------- 74 (111)
T ss_dssp SCCCEEEEEECSSCHHH-------HHHHHHHHHHHHHTTTTSEEEEEETTT------CH----HHHHHTTC---------
T ss_pred cCCEEEEEEeCCCChhH-------HHHHHHHHHHHHHcCCceEEEEEECCc------Ch----hHHHhcCC---------
Confidence 57999999999999876 9999999999999997 9999999875 22 23344443
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++=++|+++.+..|..+.++|.+.|++++.
T Consensus 75 ------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 75 ------KGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp ------CSSCEEEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred ------CcCCEEEEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 245654333799999999999999999999998875
No 222
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=99.09 E-value=2.8e-10 Score=99.65 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=69.9
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC-CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP-QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~-~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+.+||++||.||++||++| ++..|.|++++++|+ ++.++.|+.+. .. ++.+++++
T Consensus 17 ~~~~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v------- 72 (106)
T 1xwb_A 17 KASGKLVVLDFFATWCGPC-------KMISPKLVELSTQFADNVVVLKVDVDE------CE----DIAMEYNI------- 72 (106)
T ss_dssp HHTTSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTEEEEEEETTT------CH----HHHHHTTC-------
T ss_pred hcCCCEEEEEEECCcCHHH-------HHhhHHHHHHHHHhCCCeEEEEEeccc------hH----HHHHHcCC-------
Confidence 3479999999999999876 999999999999995 59999998875 22 23334432
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++.++|+++.+..| .+.++|.+.|+++
T Consensus 73 --------~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 73 --------SSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp --------CSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred --------CcccEEEEEcCCcEEEEEcC-CCHHHHHHHHHHh
Confidence 25678777789999999999 6778888887764
No 223
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.08 E-value=1e-08 Score=106.90 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=94.7
Q ss_pred ceEEEccCCCEEEEEeCC-CcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSN-HHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~-nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.++.+.+ +|+++|++.+ +++|+.+|++|+++..++...+. ...+..|.++++++ +++++|+++.+++|..+
T Consensus 80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~------~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 80 QTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGI------ERPHAQFRQINKNK-KGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSC------SSGGGSCSCCEECT-TSCEEEEETTTTEEEEE
T ss_pred cccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCC------CcccccccCceECC-CCCEEEEecCCCEEEEE
Confidence 3556664 7899999998 99999999999998877642111 12456788999986 78899999999999999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
|+++..+-++. .+ ..|+++++.++|++||++..+++|..||+++
T Consensus 152 d~~G~~~w~~~-~~-----------------------------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 152 APNGQLLNSVK-LS-----------------------------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp CTTSCEEEEEE-CS-----------------------------------SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred CCCCCEEEEEE-CC-----------------------------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 99866666652 11 1478899989999999999999999999997
Q ss_pred CcEE
Q 004302 427 GEIK 430 (762)
Q Consensus 427 g~I~ 430 (762)
|++.
T Consensus 196 G~~~ 199 (276)
T 3no2_A 196 NRIV 199 (276)
T ss_dssp CCEE
T ss_pred CcEE
Confidence 7653
No 224
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=99.07 E-value=2.2e-10 Score=113.98 Aligned_cols=98 Identities=5% Similarity=-0.093 Sum_probs=81.4
Q ss_pred CccccCC-CCCCEEEEEE-eccCCCCccCCCCcch-hhcHHHHHHHHHC-C--Ce-EEEEEEcCCCccCcCCHHHHHHHH
Q 004302 99 DNIHFFK-RGGAFLVLAG-RFVDNCDSLIAGCGTV-VTFEKVKSIQQSF-P--QL-QVIGFLHGCSTISAVDQTRLVEML 171 (762)
Q Consensus 99 ~~v~Lsd-~rGK~VvLnF-WAtWC~pC~~p~C~~~-~emP~L~~L~~~y-~--~v-~VvgV~~~~~~~~e~~~~~v~~f~ 171 (762)
+.++|++ ++||+|||.| ++.||+.| - .|+|.+.+.+++| . ++ .|+||+.+. ....++|.
T Consensus 33 ~~v~l~d~~~gk~vVL~fyP~~fTp~C-------t~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~-------~~~~~~~~ 98 (182)
T 1xiy_A 33 TSIDTHELFNNKKILLISLPGAFTPTC-------STKMIPGYEEEYDYFIKENNFDDIYCITNND-------IYVLKSWF 98 (182)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHH-------HHTHHHHHHHTHHHHHTTSCCSEEEEEESSC-------HHHHHHHH
T ss_pred eeEeHHHHhCCCcEEEEEeCCCCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEEEeCCC-------HHHHHHHH
Confidence 6899998 6999888876 56789755 8 8999999999999 5 47 599999874 78899999
Q ss_pred HhcCC-CcceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecC
Q 004302 172 MKEYI-TFPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHEN 211 (762)
Q Consensus 172 ~k~~i-tfPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G 211 (762)
+++++ +||+|-|.+..+.++||+ + +|||| +|+|++....
T Consensus 99 ~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~ 153 (182)
T 1xiy_A 99 KSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQE 153 (182)
T ss_dssp HHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred HHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEe
Confidence 99999 699999998777777663 2 48998 9999987644
No 225
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.07 E-value=3e-08 Score=103.83 Aligned_cols=240 Identities=13% Similarity=0.142 Sum_probs=140.6
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC--CCcEEEE--ecC-CCCCCCCcccccccCCcceEEEecCCCeEEEEeC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG--NGKILDC--IGS-CPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS 338 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~--~G~i~~~--iGs-G~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt 338 (762)
...|.+|++++.+..||+++..++.|.+++. +|..... +.. +.+ +........|.+++++|++. |||++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~spdg~-l~v~~~ 159 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHG----PRPEQDGSHIHYTDLTPDNR-LAVIDL 159 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCC----SSTTCSSCCEEEEEECTTSC-EEEEET
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCC----CCccccCCCceEEEECCCCc-EEEEeC
Confidence 5689999999877889999988888888875 4554322 211 111 11112345789999998655 999999
Q ss_pred CCCeEEEEeCC-CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCC
Q 004302 339 ENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSF 416 (762)
Q Consensus 339 ~NhrIRkid~~-~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN 416 (762)
++++|++++.. ++.+..+.... .. .-..|.++++++||. ||+++..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~----------------~~---------------~g~~p~~~~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLT----------------ME---------------AGFGPRHLVFSPDGQYAFLAGELS 208 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEE----------------CC---------------TTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCEEEEEEECCCCcEEEeeeEE----------------cC---------------CCCCCceEEECCCCCEEEEEeCCC
Confidence 99999999987 55544432110 00 012588999999987 99999999
Q ss_pred CEEEEEECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE
Q 004302 417 ETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC 494 (762)
Q Consensus 417 ~rI~v~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA 494 (762)
++|++|+.+ ++.+..+.. ... .+.. ..+ ...+...++++++..|||+
T Consensus 209 ~~v~v~~~~~~~g~~~~~~~--------~~~-----------~~~~-----------~~~-~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFTQLGI--------VKT-----------IPAD-----------YTA-HNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEE--------EES-----------SCTT-----------CCS-CCEEEEEEECTTSCEEEEE
T ss_pred CEEEEEEecCCCCceEEeee--------eee-----------cCCC-----------CCC-CCcceeEEECCCCCEEEEE
Confidence 999888765 354432210 000 0000 000 0112345666667789999
Q ss_pred ECCCCEEEEEECC-CCcEEEEe-eccccccCCCceeec-cccceeecccccCCCccccceeeecCCCcee-EEEEEecCC
Q 004302 495 DIVGQRIMRLNRE-SGVCSNFQ-FSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLPGRID-IKVNVDIPS 570 (762)
Q Consensus 495 Dt~NhRIrkidl~-~~~~sti~-~s~~G~lG~p~~~~~-pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~-~~v~v~~p~ 570 (762)
+..+++|..++++ ++....+. +...| ..|..+.+ |-++..-++....+. -.+-+++...|++. +.-.+.+|.
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~--v~v~~~d~~tg~l~~~~~~~~~p~ 333 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDN--ATLYARDLTSGKLSLLQKDVTVPE 333 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTE--EEEEEECTTTCCEEEEEEEEECTT
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCc--EEEEEEeCCCCeEEecccceecCC
Confidence 9999999999986 33333322 11111 23444333 555422222211111 12223356667663 444456665
Q ss_pred Cccc
Q 004302 571 DTEL 574 (762)
Q Consensus 571 ~~~l 574 (762)
...+
T Consensus 334 p~~~ 337 (347)
T 3hfq_A 334 GVCV 337 (347)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 5443
No 226
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=2.4e-10 Score=105.96 Aligned_cols=90 Identities=11% Similarity=-0.049 Sum_probs=69.5
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
.+||++||+|||+||++| ++++|.|++++++|++ +.++.|+.+. . .++.+++++.
T Consensus 32 ~~~~~vlv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~------~----~~~~~~~~v~---- 90 (140)
T 2dj1_A 32 ADKDTVLLEFYAPWCGHC-------KQFAPEYEKIASTLKDNDPPIAVAKIDATS------A----SMLASKFDVS---- 90 (140)
T ss_dssp TTCSEEEEEECCTTCHHH-------HTTHHHHHHHHHHHHSSSSCCEEEEECTTT------C----HHHHHHTTCC----
T ss_pred hcCCeEEEEEECCCCHHH-------HHhhHHHHHHHHHHhccCCceEEEEEeCcc------c----HHHHHHCCCC----
Confidence 358999999999999876 9999999999999864 8888887664 2 2334444432
Q ss_pred eCCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 182 LSNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++|+ +++ ++|+ +....|..+.++|.+.|++++...
T Consensus 91 -----------~~Pt~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~~~ 126 (140)
T 2dj1_A 91 -----------GYPTIKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQPD 126 (140)
T ss_dssp -----------SSSEEEEE-ETTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred -----------ccCeEEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence 3565 445 7898 667889999999999999988754
No 227
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=3e-10 Score=106.26 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=64.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+||+|||+|||+||+|| +.+.|.|++|+++|+++.|+.|+.+. .. ++
T Consensus 29 ~~~~vvv~f~a~wC~~C-------~~~~p~l~~la~~~~~v~~~~vd~~~------~~-------~~------------- 75 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMC-------LVVNQHLSVLARKFPETKFVKAIVNS------CI-------EH------------- 75 (135)
T ss_dssp SSCEEEEEECCTTCHHH-------HHHHHHHHHHHHHCSSEEEEEECCSS------SC-------SS-------------
T ss_pred CCCEEEEEEECCCChHH-------HHHHHHHHHHHHHCCCcEEEEEEhhc------Cc-------cc-------------
Confidence 57999999999999977 99999999999999999999998765 10 01
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCc-------CHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSL-------DIGMLNKAVEEL 225 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~-------~~~~L~~~l~~l 225 (762)
..-.++|++++-++|+++.+..|.. +.++|++.|.+.
T Consensus 76 --~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 76 --YHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp --CCSSCCSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred --CCCCCCCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 1123567766656999999998875 556666666653
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=2.5e-08 Score=104.85 Aligned_cols=167 Identities=13% Similarity=0.023 Sum_probs=117.4
Q ss_pred CCcceEEEccCCCEEEEEeC--CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 265 HFPGCISADESGNRLFLSDS--NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs--~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
.+|.|+++++ +++||++.. +.++|+++|. +|+++..+--+. -..+.|++++ ++.||+++..++
T Consensus 21 ~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-----------~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 21 AFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-----------SYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp CCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-----------TCCEEEEEEE--TTEEEEEETTCS
T ss_pred CCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-----------CcceEEEEEe--CCEEEEEEecCC
Confidence 4789999996 489999974 6899999998 799888764321 1235678886 689999999999
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
+|.++|..++.+..-...| ...++||+.| .+.||++| +.++|++
T Consensus 87 ~v~viD~~t~~v~~~i~~g----------------------------------~~~g~glt~D-g~~l~vs~-gs~~l~v 130 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ----------------------------------MKDGWGLATD-GKILYGSD-GTSILYE 130 (266)
T ss_dssp EEEEEETTTTEEEEEEECC----------------------------------SSSCCEEEEC-SSSEEEEC-SSSEEEE
T ss_pred EEEEEECCCCcEEEEEECC----------------------------------CCCeEEEEEC-CCEEEEEC-CCCeEEE
Confidence 9999999877543322221 0136777775 57899999 7899999
Q ss_pred EECCCCcEE-EEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 422 MDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 422 ~d~~~g~I~-ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+|+++.++. ++-.|.. |. | -..+ ....+. ++.||++....+.
T Consensus 131 iD~~t~~v~~~I~Vg~~------~~------------p--------------~~~~---nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 131 IDPHTFKLIKKHNVKYN------GH------------R--------------VIRL---NELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp ECTTTCCEEEEEECEET------TE------------E--------------CCCE---EEEEEE--TTEEEEEETTSSE
T ss_pred EECCCCcEEEEEEECCC------Cc------------c--------------cccc---eeEEEE--CCEEEEecCCCCe
Confidence 999987643 3311110 00 0 0011 112222 6799999999999
Q ss_pred EEEEECCCCcEE-EEeecc
Q 004302 501 IMRLNRESGVCS-NFQFSN 518 (762)
Q Consensus 501 Irkidl~~~~~s-ti~~s~ 518 (762)
|.+||+.++.+. +|.+++
T Consensus 174 V~vID~~tg~V~~~I~~~g 192 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPN 192 (266)
T ss_dssp EEEEETTTCCEEEEEECHH
T ss_pred EEEEECCCCcEEEEEECCC
Confidence 999999988664 666553
No 229
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=99.05 E-value=3.6e-10 Score=101.37 Aligned_cols=88 Identities=7% Similarity=-0.081 Sum_probs=68.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
++|++||+|||+||++| +...|.|+++.++|+++.++.|+.+. ..+ +.+++++
T Consensus 18 ~~~~~vv~f~a~wC~~C-------~~~~~~l~~~~~~~~~v~~~~vd~~~------~~~----l~~~~~v---------- 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHC-------KNMEKVLDKFGARAPQVAISSVDSEA------RPE----LMKELGF---------- 70 (110)
T ss_dssp TCSEEEEEEECSSCSTH-------HHHHHHHHHHHTTCTTSCEEEEEGGG------CHH----HHHHTTC----------
T ss_pred cCCCEEEEEECCCCHhH-------HHHHHHHHHHHHHCCCcEEEEEcCcC------CHH----HHHHcCC----------
Confidence 57999999999999866 99999999999999999999998764 222 2333332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++=++|+++.+..|..+.++|.+.|+...
T Consensus 71 -----~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 71 -----ERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp -----CSSCEEEEEESSSEEEEEESCCCHHHHHHHHHTC-
T ss_pred -----cccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHHh
Confidence 24676443389999999999999998888877543
No 230
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.05 E-value=4.4e-10 Score=98.54 Aligned_cols=90 Identities=7% Similarity=-0.053 Sum_probs=70.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+++|.||++||++| +..+|.|++++++|++ +.++.|+.+. +. ++.+++++
T Consensus 17 ~~~~~lv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 70 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPC-------RMIAPILEEIAKEYEGKLLVAKLDVDE------NP----KTAMRYRV--------- 70 (109)
T ss_dssp HCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTBTTBEEEEEETTT------CH----HHHHHTTC---------
T ss_pred CCCeEEEEEECCCCHHH-------HHhhHHHHHHHHHhhCceEEEEEECCC------CH----hHHHhCCC---------
Confidence 58999999999999876 9999999999999996 9999999875 32 23334443
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++|++++=++|+++....|..+.++|.+.|++++..
T Consensus 71 ------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~~ 107 (109)
T 2yzu_A 71 ------MSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPA 107 (109)
T ss_dssp ------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred ------CcCCEEEEEeCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence 2467643338999999999999999999988876543
No 231
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.05 E-value=3.1e-10 Score=99.56 Aligned_cols=87 Identities=11% Similarity=-0.028 Sum_probs=69.3
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
-+||++||.||++||++| +...|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 18 ~~~~~~lv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v-------- 72 (107)
T 2i4a_A 18 KASGLVLVDFWAEWCGPC-------KMIGPALGEIGKEFAGKVTVAKVNIDD------NP----ETPNAYQV-------- 72 (107)
T ss_dssp TCSSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTSEEEEEEETTT------CC----HHHHHTTC--------
T ss_pred hCCCEEEEEEECCCChhH-------HHHhHHHHHHHHHhCCcEEEEEEECCC------CH----HHHHhcCC--------
Confidence 368999999999999876 9999999999999986 9999999875 21 23333332
Q ss_pred CCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 185 KNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 185 ~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|+ +++ ++|+++.+..|..+.++|.+.|+++
T Consensus 73 -------~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 73 -------RSIPTLMLV-RDGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp -------CSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred -------CccCEEEEE-eCCEEEEEecCCCCHHHHHHHHHhc
Confidence 24565 455 8999999999999999998888764
No 232
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.04 E-value=2.3e-08 Score=105.49 Aligned_cols=174 Identities=14% Similarity=0.170 Sum_probs=119.9
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC--C-----c-EEEE-----ecCCCCCCCCcccccccCCcceEEEecC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGN--G-----K-ILDC-----IGSCPGFEDGEFESSKLMRPAASFYHKD 329 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G-----~-i~~~-----iGsG~G~~DG~~~~a~fn~P~GIavd~~ 329 (762)
...+|.+++++|.+..||+++.+.++|.+++.+ + + +... +-. ..-..|.+++++|+
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~spd 221 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-----------APGSGPRHLIFNSD 221 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-----------CTTCCEEEEEECTT
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-----------CCCCCCeEEEEcCC
Confidence 345689999998777899999999999988653 3 2 3211 111 01245889999998
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-
Q 004302 330 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN- 408 (762)
Q Consensus 330 ~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~- 408 (762)
+..|||++..+++|++++..++.+..+..... ....+..|.+|++++||.
T Consensus 222 g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~-----------------------------~~~~~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 222 GKFAYLINEIGGTVIAFRYADGMLDEIQTVAA-----------------------------DTVNAQGSGDIHLSPDGKY 272 (361)
T ss_dssp SSEEEEEETTTCEEEEEEEETTEEEEEEEEES-----------------------------CSSCCCCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCCeEEEEEecCCceEEeEEEec-----------------------------CCCCCCCcccEEECCCCCE
Confidence 77899999999999999988777655532110 011245689999999986
Q ss_pred EEEEECC-CCEEEEEECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEE
Q 004302 409 LLIINRS-FETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI 485 (762)
Q Consensus 409 LYVAD~g-N~rI~v~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~ 485 (762)
||+++.+ +++|.+|+.+ ++.+..+.. - .. | ..| ...+++
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--~---~~-g-----------------------------~~~---~~~~~s 314 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTKVGY--Q---LT-G-----------------------------IHP---RNFIIT 314 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEEEEE--E---EC-S-----------------------------SCC---CEEEEC
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEEeeE--e---cC-C-----------------------------CCC---ceEEEC
Confidence 8999999 8999888774 555433210 0 00 0 112 235666
Q ss_pred ecCCEEEEEECCCCEEEE--EECCCCcEEEE
Q 004302 486 AFQNHILLCDIVGQRIMR--LNRESGVCSNF 514 (762)
Q Consensus 486 ~~~g~LYVADt~NhRIrk--idl~~~~~sti 514 (762)
+++..||+++..+++|.. +|.+++.++.+
T Consensus 315 pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 315 PNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 677789999999998888 67677776643
No 233
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.04 E-value=1.6e-08 Score=105.86 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=120.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
....|.+++++|.+. +|+++.+.++|++++.+ |++........ ..-..|.+++++|++..|||++..+
T Consensus 139 ~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~---------~~g~~p~~~~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 139 DGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM---------EAGFGPRHLVFSPDGQYAFLAGELS 208 (347)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEEC---------CTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc---------CCCCCCceEEECCCCCEEEEEeCCC
Confidence 456789999998555 99999999999999864 65543221100 0113588999999777799999999
Q ss_pred CeEEEEeCC--CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCC
Q 004302 341 HAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFE 417 (762)
Q Consensus 341 hrIRkid~~--~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~ 417 (762)
++|++++.+ ++.+..+..... ... + ......|.++++++||. |||++.+++
T Consensus 209 ~~v~v~~~~~~~g~~~~~~~~~~--~~~-----------~-------------~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFTQLGIVKT--IPA-----------D-------------YTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEEES--SCT-----------T-------------CCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred CEEEEEEecCCCCceEEeeeeee--cCC-----------C-------------CCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 999998865 365543321110 000 0 01135699999999986 899999999
Q ss_pred EEEEEECC-CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEEC
Q 004302 418 TLWIMDLA-SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDI 496 (762)
Q Consensus 418 rI~v~d~~-~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt 496 (762)
+|.+|+.+ +|.+..+.. ... ....| ...++++++..|||++.
T Consensus 263 ~v~v~~~~~~g~~~~~~~-------~~~---------------------------~~~~~---~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQ-------IST---------------------------EGDFP---RDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEEEECGGGCEEEEEE-------EEC---------------------------SSSCC---CEEEECTTSSEEEEEET
T ss_pred EEEEEEECCCCcEEEeEE-------Eec---------------------------CCCCc---CeEEECCCCCEEEEEEc
Confidence 99999975 233322210 000 00112 23566667778999999
Q ss_pred CCCEEEEE--ECCCCcEEEEe
Q 004302 497 VGQRIMRL--NRESGVCSNFQ 515 (762)
Q Consensus 497 ~NhRIrki--dl~~~~~sti~ 515 (762)
.+++|..+ |.++|.++.+.
T Consensus 306 ~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 306 NTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp TTTEEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEEeCCCCeEEecc
Confidence 99998888 77788877553
No 234
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=99.04 E-value=3.6e-10 Score=101.91 Aligned_cols=93 Identities=10% Similarity=-0.098 Sum_probs=70.0
Q ss_pred ccccC-CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC------eEEEEEEcCCCccCcCCHHHHHHHHH
Q 004302 100 NIHFF-KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ------LQVIGFLHGCSTISAVDQTRLVEMLM 172 (762)
Q Consensus 100 ~v~Ls-d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~------v~VvgV~~~~~~~~e~~~~~v~~f~~ 172 (762)
++... ..+||++||+|||+||++| ++++|.|++++++|++ +.|+.|+.+. .
T Consensus 16 ~f~~~v~~~~~~vlv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~------~--------- 73 (121)
T 2djj_A 16 NYNEIVLDDTKDVLIEFYAPWCGHC-------KALAPKYEELGALYAKSEFKDRVVIAKVDATA------N--------- 73 (121)
T ss_dssp TTTTSSSCTTSCEEEEEECSSCTTH-------HHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT------S---------
T ss_pred CHHHHhhcCCCCEEEEEECCCCHhH-------HHhhHHHHHHHHHHhhcccCCceEEEEEECcc------c---------
Confidence 44433 3479999999999999866 9999999999999973 8999998765 1
Q ss_pred hcCCCcceeeCCCCccccccCceE-EEEcCCCCE-EEEecCCcCHHHHHHHHHHHHH
Q 004302 173 KEYITFPILLSNKNFPQMENGACY-LLSKDFGNA-RVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 173 k~~itfPVl~D~~~~~~~~ygv~t-~lId~~G~i-v~~~~G~~~~~~L~~~l~~ll~ 227 (762)
++ .. .-.++|+ +++++.|++ +..+.|..+.++|.+.|++++.
T Consensus 74 ------~~-~~------~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (121)
T 2djj_A 74 ------DV-PD------EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117 (121)
T ss_dssp ------CC-SS------CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred ------cc-cc------ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence 10 00 2245675 677877775 6678899999999988887654
No 235
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=99.03 E-value=4.3e-10 Score=102.58 Aligned_cols=87 Identities=9% Similarity=-0.076 Sum_probs=70.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+||++||.||++||++| ++..|.|++++++|++ +.++.|+.+. .. ++.+++++
T Consensus 32 ~~k~vvv~f~a~~C~~C-------~~~~~~l~~l~~~~~~~~v~~~~vd~d~------~~----~~~~~~~v-------- 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPC-------KMIGPVFEKISDTPAGDKVGFYKVDVDE------QS----QIAQEVGI-------- 86 (121)
T ss_dssp SSSCEEEEEECTTCSTH-------HHHHHHHHHHHTSTHHHHSEEEEEETTT------CH----HHHHHHTC--------
T ss_pred CCCEEEEEEECCCCHhH-------HHHHHHHHHHHHHCcCCcEEEEEEECcC------CH----HHHHHcCC--------
Confidence 68999999999999866 9999999999999987 9999999875 32 23334433
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|. +.++|.+.|++++
T Consensus 87 -------~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 87 -------RAMPTFVFFKNGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp -------CSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred -------CcccEEEEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 256776666799999999998 8889999888765
No 236
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=99.02 E-value=2.5e-10 Score=108.68 Aligned_cols=93 Identities=10% Similarity=0.000 Sum_probs=74.8
Q ss_pred CCEEEEEEeccCC--CCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 108 GAFLVLAGRFVDN--CDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 108 GK~VvLnFWAtWC--~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+++|||+|||+|| +|| +...|.|++|.++|++ ++|+=|++|+ . .+...+++|
T Consensus 33 ~~~vlVdF~A~wCr~gpC-------k~iaPvleela~e~~~~v~~~KVdvDe------~----~~la~~ygV-------- 87 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEA-------ADLAVVLPELINAFPGRLVAAEVAAEA------E----RGLMARFGV-------- 87 (137)
T ss_dssp SSEEEEEECCCTTTCTTH-------HHHHHHHHHHHHTSTTTEEEEEECGGG------H----HHHHHHHTC--------
T ss_pred CCcEEEEEeCCccCCCch-------hhHHhHHHHHHHHccCCcEEEEEECCC------C----HHHHHHcCC--------
Confidence 4599999999999 765 9999999999999987 9999998875 1 122233332
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccC
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~ 232 (762)
.++||+++=++|+++.+..|..++++|.+.|++++..+..|
T Consensus 88 -------~siPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~~~~~~ 128 (137)
T 2qsi_A 88 -------AVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQP 128 (137)
T ss_dssp -------CSSSEEEEEECCEEEEEEESCCCHHHHHHHHHHHHHHHHCC
T ss_pred -------ccCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhcccCCC
Confidence 24678877799999999999999999999999988654443
No 237
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.02 E-value=1.5e-08 Score=104.72 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=120.2
Q ss_pred CCcceEEEccCCCEEEEEeCCCcE-EEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 265 HFPGCISADESGNRLFLSDSNHHR-IIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhr-I~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
..|.+++++|.+..||+++...+. |.+++. +|.+...-..-. ..-..|.++++++++..|||++..++
T Consensus 128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI---------SGGTRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE---------CSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc---------cCCCCccceEECCCCCEEEEEeCCCC
Confidence 357899999877789999998777 666654 555543221100 01134899999997778999999999
Q ss_pred eEEEEeCCCCEE----EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCC
Q 004302 342 AIRRADMGRRVL----ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSF 416 (762)
Q Consensus 342 rIRkid~~~g~I----~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN 416 (762)
.|+++|+.++.+ .++. . -..|.+++++++|. ||+++.+.
T Consensus 199 ~v~v~d~~~~~~~~~~~~~~-~-----------------------------------~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAVG-T-----------------------------------NNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp EEEEEECSSTTSCEEEEEEE-C-----------------------------------SSCCCCEEECTTSSEEEEECSSE
T ss_pred eEEEEECCCCcccceeeecc-C-----------------------------------CCCCceEEECCCCCEEEEEEcCC
Confidence 999999876543 3331 0 02588999999987 99999999
Q ss_pred CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEEC
Q 004302 417 ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDI 496 (762)
Q Consensus 417 ~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt 496 (762)
+.|++||..++++..+..- . ..+. ++ + ...+.....++++++..||++..
T Consensus 243 ~~i~~~d~~~~~~~~~~~~-~------~~~~------~~--~---------------~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSF-G------HGLL------ID--P---------------RPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp EEEEEEETTTTEEEEEEEE-E------CCCC------CC--C---------------GGGTTCCCEEECTTSSEEEEEET
T ss_pred CEEEEEECCCCceeeeccc-c------cccc------cC--C---------------CCcccccceEECCCCCEEEEecC
Confidence 9999999998887544100 0 0000 00 0 00000112466677789999999
Q ss_pred CCCEEEEEECCCCcEEEE
Q 004302 497 VGQRIMRLNRESGVCSNF 514 (762)
Q Consensus 497 ~NhRIrkidl~~~~~sti 514 (762)
.++.|..+++++..+..+
T Consensus 293 ~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 293 ISRELKVFTISGKVVGYV 310 (331)
T ss_dssp TTTEEEEEETTSCEEEEC
T ss_pred CCCcEEEEEecCCcccce
Confidence 999999999998876554
No 238
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.01 E-value=2.4e-10 Score=114.50 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=81.8
Q ss_pred eecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHH
Q 004302 92 LWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEM 170 (762)
Q Consensus 92 ~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f 170 (762)
...+.++.++...-.+||++||+|||+||++| ++++|.+++++++|++ +.|+.|+.+. .. ++
T Consensus 98 ~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C-------~~~~p~~~~l~~~~~~~v~~~~vd~~~------~~----~l 160 (210)
T 3apq_A 98 EIITLERREFDAAVNSGELWFVNFYSPGCSHC-------HDLAPTWREFAKEVDGLLRIGAVNCGD------DR----ML 160 (210)
T ss_dssp TSEECCHHHHHHHHHHSCCEEEEEECTTCHHH-------HHHHHHHHHHHHHTBTTBEEEEEETTT------CH----HH
T ss_pred ceEEecHHHHHHHHccCCcEEEEEeCCCChhH-------HHHHHHHHHHHHHhcCceEEEEEECCc------cH----HH
Confidence 34444444554444679999999999999876 9999999999999987 9999999875 22 23
Q ss_pred HHhcCCCcceeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 171 LMKEYITFPILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 171 ~~k~~itfPVl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.+++++ .++|++++-++|+++....|..+.++|.+.|.+++...
T Consensus 161 ~~~~~v---------------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~ 204 (210)
T 3apq_A 161 CRMKGV---------------NSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST 204 (210)
T ss_dssp HHHTTC---------------CSSSEEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred HHHcCC---------------CcCCeEEEEECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence 344443 24676554499999999999999999999999988653
No 239
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.99 E-value=1.4e-09 Score=91.78 Aligned_cols=78 Identities=10% Similarity=-0.045 Sum_probs=62.7
Q ss_pred CEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCc
Q 004302 109 AFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNF 187 (762)
Q Consensus 109 K~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~ 187 (762)
+++|+.||++||++| ++..|.|++++++|++ +.++.|+.++ +. .
T Consensus 3 ~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~vd~~~------~~----------------------~ 47 (85)
T 1fo5_A 3 KVKIELFTSPMCPHC-------PAAKRVVEEVANEMPDAVEVEYINVME------NP----------------------Q 47 (85)
T ss_dssp CEEEEEEECCCSSCC-------CTHHHHHHHHHHHCSSSEEEEEEESSS------SC----------------------C
T ss_pred ceEEEEEeCCCCCch-------HHHHHHHHHHHHHcCCceEEEEEECCC------CH----------------------H
Confidence 588999999999865 9999999999999995 9999998875 10 1
Q ss_pred ccccc---CceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 188 PQMEN---GACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 188 ~~~~y---gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+...| ++|++++ +|++ +..|..+.++|.+.|+++
T Consensus 48 ~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 48 KAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHHHHHHHH
T ss_pred HHHHCCCcccCEEEE--CCEE--eeecCCCHHHHHHHHHHh
Confidence 22333 5678888 8887 788988889999888865
No 240
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.99 E-value=3.5e-10 Score=101.80 Aligned_cols=88 Identities=8% Similarity=-0.069 Sum_probs=70.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.||++||.||++||++| +...|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 29 ~~~~~lv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~i--------- 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPC-------KMVAPVLEEIATERATDLTVAKLDVDT------NP----ETARNFQV--------- 82 (121)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CH----HHHHHTTC---------
T ss_pred CCCcEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCeEEEEEECCC------CH----HHHHhcCC---------
Confidence 58999999999999876 9999999999999986 9999999875 22 23333332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++.+..|..+.++|.+.|++++
T Consensus 83 ------~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 83 ------VSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp ------CSSSEEEEEETTEEEEEEESCCCHHHHHHHTCSCC
T ss_pred ------CcCCEEEEEECCEEEEEecCCCCHHHHHHHHHHHH
Confidence 24677666679999999999999888888776543
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.99 E-value=7.9e-08 Score=99.77 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=115.6
Q ss_pred CCcceEEEccCCCEEEEEeC--CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 265 HFPGCISADESGNRLFLSDS--NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs--~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
.+=.|+.++ +++||++.. ++++|+++|. +|+++..+.-... ....||+++ ++.||+++..++
T Consensus 21 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-----------~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 21 AFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-----------YFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp CCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-----------CCEEEEEEE--TTEEEEEESSSS
T ss_pred cccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-----------cceeEEEEe--CCEEEEEEeeCC
Confidence 345799998 589999955 4679999998 7999887743210 123567775 789999999999
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
++.++|.++..+..-...+ ..+||++-+ ++.||++| +.++|++
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-----------------------------------~~Gwglt~d-g~~L~vSd-gs~~l~~ 128 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-----------------------------------GEGWALTSD-DSHLYMSD-GTAVIRK 128 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-----------------------------------SCCCEEEEC-SSCEEEEC-SSSEEEE
T ss_pred EEEEEECCcCcEEEEEeCC-----------------------------------CCceEEeeC-CCEEEEEC-CCCeEEE
Confidence 9999999876543322221 047889876 68999999 6899999
Q ss_pred EECCCCcEE-EEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 422 MDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 422 ~d~~~g~I~-ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+|+++..+. ++-.+.. +.|...+ -.+...+|.||++.-..+.
T Consensus 129 iDp~t~~~~~~I~V~~~------------------------------------g~~~~~l-NeLe~~~G~lyanvw~s~~ 171 (243)
T 3mbr_X 129 LDPDTLQQVGSIKVTAG------------------------------------GRPLDNL-NELEWVNGELLANVWLTSR 171 (243)
T ss_dssp ECTTTCCEEEEEECEET------------------------------------TEECCCE-EEEEEETTEEEEEETTTTE
T ss_pred EeCCCCeEEEEEEEccC------------------------------------Ccccccc-eeeEEeCCEEEEEECCCCe
Confidence 999987653 2211100 0111000 1123347899999988999
Q ss_pred EEEEECCCCcEE-EEeecc
Q 004302 501 IMRLNRESGVCS-NFQFSN 518 (762)
Q Consensus 501 Irkidl~~~~~s-ti~~s~ 518 (762)
|.+||+.+|.+. ++.+++
T Consensus 172 I~vIDp~tG~V~~~idl~~ 190 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQA 190 (243)
T ss_dssp EEEECTTTCBEEEEEECGG
T ss_pred EEEEECCCCCEEEEEECCc
Confidence 999999999876 555554
No 242
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=98.98 E-value=7.1e-10 Score=109.29 Aligned_cols=111 Identities=11% Similarity=-0.030 Sum_probs=88.6
Q ss_pred CCCceeecccCC-CccccCC-CCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCC--CeE-EEEEEcCCCccC
Q 004302 87 QGPHHLWFNIVE-DNIHFFK-RGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQ-VIGFLHGCSTIS 160 (762)
Q Consensus 87 ~g~~~~w~n~~g-~~v~Lsd-~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~-VvgV~~~~~~~~ 160 (762)
..|+|++.+..+ ++++|++ ++||+|||.|+- -||| .| -.|+|.+.+.+++|+ +++ |+||+.+.
T Consensus 19 ~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp-----~C--t~e~~~f~~~~~ef~~~gv~~VigIS~D~---- 87 (171)
T 2xhf_A 19 IIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVP-----GS--NNHIPEYLSLYDKFKEEGYHTIACIAVND---- 87 (171)
T ss_dssp BCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCT-----TT--TSSHHHHHHTHHHHHHTTCCEEEEEESSC----
T ss_pred CCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCC-----cC--HHHHHHHHHHHHHHHHCCCCEEEEEeCCC----
Confidence 345566653322 7999999 599999999875 5776 55 999999999999887 475 99999874
Q ss_pred cCCHHHHHHHHHhcCC--CcceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecCC
Q 004302 161 AVDQTRLVEMLMKEYI--TFPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHENS 212 (762)
Q Consensus 161 e~~~~~v~~f~~k~~i--tfPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G~ 212 (762)
....++|.+++++ +||+|-|.+..+.++||+ + +|||| +|+|++.....
T Consensus 88 ---~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~ 152 (171)
T 2xhf_A 88 ---PFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEP 152 (171)
T ss_dssp ---HHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETT
T ss_pred ---HHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeC
Confidence 7889999999999 999999998777776654 1 58998 99999987654
No 243
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.98 E-value=6.9e-11 Score=107.85 Aligned_cols=92 Identities=9% Similarity=-0.057 Sum_probs=71.6
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+||++||.||++||++| ++.+|.|+++.++|+++.++.|+.+. .. ++.+++++
T Consensus 34 ~~~~~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~v~~~~v~~~~------~~----~~~~~~~v--------- 87 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGPC-------RFIAPVFAEYAKKFPGAVFLKVDVDE------LK----EVAEKYNV--------- 87 (130)
T ss_dssp TTTCBCBEECCSSSCSCS-------SSSHHHHHHHHHHCTTBCCEECCTTT------SG----GGHHHHTC---------
T ss_pred hcCCEEEEEEECCCChhH-------HHHHHHHHHHHHHCCCCEEEEEeccc------hH----HHHHHcCC---------
Confidence 469999999999999865 99999999999999998888887764 11 12233332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.++|++++.++|+++.+..| .+.++|.+.|++++....
T Consensus 88 ------~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~~~ 125 (130)
T 1wmj_A 88 ------EAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHVGATA 125 (130)
T ss_dssp ------CSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSSSC
T ss_pred ------CccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhccC
Confidence 24667666689999988888 477889999998876644
No 244
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.7e-10 Score=107.36 Aligned_cols=93 Identities=6% Similarity=-0.135 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
.+.++++|||+|||+||+|| ++++|.|++++++|++ +.|+.|+.+. . .++.+++++..+.
T Consensus 22 ~~~~~~~vlv~f~a~wC~~C-------~~~~p~~~~l~~~~~~~~v~~~~vd~~~------~----~~~~~~~~v~~~~- 83 (137)
T 2dj0_A 22 ERDKRVTWIVEFFANWSNDC-------QSFAPIYADLSLKYNCTGLNFGKVDVGR------Y----TDVSTRYKVSTSP- 83 (137)
T ss_dssp HHSTTSCEEEEECCTTCSTT-------TTTHHHHHHHHHHHCSSSCEEEECCTTT------C----HHHHHHTTCCCCS-
T ss_pred hcCCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhCCCCeEEEEEeCcc------C----HHHHHHccCcccC-
Confidence 34568899999999999866 9999999999999974 9999988765 2 2355677765221
Q ss_pred eCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 182 LSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
...++|++++-++|+++.+..|..+.+.|.+.|
T Consensus 84 --------~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (137)
T 2dj0_A 84 --------LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 116 (137)
T ss_dssp --------SSSCSSEEEEESSSSEEEEESCBCSSSCBCCCC
T ss_pred --------CcCCCCEEEEEECCEEEEEecCcCchHHHHHHH
Confidence 123678765558999999999988766654443
No 245
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.98 E-value=1.8e-09 Score=100.70 Aligned_cols=88 Identities=6% Similarity=-0.058 Sum_probs=70.3
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
++.+||+||++||++| +...|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 50 ~~~vvv~f~~~~C~~C-------~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~----~l~~~~~v---------- 102 (140)
T 1v98_A 50 APLTLVDFFAPWCGPC-------RLVSPILEELARDHAGRLKVVKVNVDE------HP----GLAARYGV---------- 102 (140)
T ss_dssp CCEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTEEEEEEETTT------CH----HHHHHTTC----------
T ss_pred CCCEEEEEECCCCHHH-------HHHHHHHHHHHHHccCceEEEEEECCC------CH----HHHHHCCC----------
Confidence 3339999999999876 9999999999999996 9999999875 22 23334332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|++++-++|+++.+..|..+.++|.+.|++++.
T Consensus 103 -----~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 103 -----RSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp -----CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred -----CccCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 246765555899999999999999999999998875
No 246
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.97 E-value=1.6e-09 Score=95.55 Aligned_cols=85 Identities=11% Similarity=-0.033 Sum_probs=68.0
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+|++||+|||+||++| +...|.+.++.++|. ++.++.|+.+. .. ++.+++++
T Consensus 21 ~~~~lv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~l~~~~~v------- 76 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHC-------KTLAPTWEELSKKEFPGLAGVKIAEVDCTA------ER----NICSKYSV------- 76 (111)
T ss_dssp SSEEEEEEECSSCHHH-------HHHHHHHHHHHTCCCCC-CCEEEEEEETTT------CH----HHHHHTTC-------
T ss_pred CCcEEEEEECCCChhH-------HHhhHHHHHHHHHhhccCCceEEEEEeccc------cH----hHHHhcCC-------
Confidence 7899999999999876 999999999999985 48999998775 32 23334332
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.++|++++-++|+++.+..|..+.++|.+.|++
T Consensus 77 --------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 77 --------RGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp --------CSSSEEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred --------CcccEEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 246776666899999999999999999888875
No 247
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.97 E-value=5.7e-10 Score=102.74 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=63.8
Q ss_pred CCCEEEEEEeccCCCCcc---------CCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCC
Q 004302 107 GGAFLVLAGRFVDNCDSL---------IAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYI 176 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~---------~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i 176 (762)
+||++||+|||+||++|+ +.+| ++..|.+++++++|++ +.++.|+.+. .
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C--~~~~p~~~~l~~~~~~~~~~~~vd~d~------~------------- 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPC--KMIAPILDEIADEYQGKLTVAKLNIDQ------N------------- 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCC--CTTHHHHTTC-------CEEEEEETTS------C-------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCc--HHHHHHHHHHHHHhcCCeEEEEEECCC------C-------------
Confidence 699999999999998331 1155 9999999999999986 9999998875 1
Q ss_pred CcceeeCCCCccccccC---ceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 177 TFPILLSNKNFPQMENG---ACY-LLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 177 tfPVl~D~~~~~~~~yg---v~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
..+..+|+ +|+ +++ ++|+++.+..|..+.++|.+.|++++
T Consensus 79 ---------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 79 ---------PGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp ---------TTTGGGGTCCBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred ---------HHHHHHcCCCccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 12334444 565 455 89999999999999999988887643
No 248
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.97 E-value=2.7e-08 Score=103.80 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=116.4
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-CCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE-NHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~-NhrIRk 345 (762)
|.++++++ +|++|++ .+++|+.+|++|+++-.+..+.+ ....++.+.+ +++++|++.+ +++|..
T Consensus 39 ~~~~~~~p-dG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~-----------~~~~~~~~~~-dG~~lv~~~~~~~~v~~ 103 (276)
T 3no2_A 39 CNSVAATK-AGEILFS--YSKGAKMITRDGRELWNIAAPAG-----------CEMQTARILP-DGNALVAWCGHPSTILE 103 (276)
T ss_dssp CCEEEECT-TSCEEEE--CBSEEEEECTTSCEEEEEECCTT-----------CEEEEEEECT-TSCEEEEEESTTEEEEE
T ss_pred CcCeEECC-CCCEEEe--CCCCEEEECCCCCEEEEEcCCCC-----------ccccccEECC-CCCEEEEecCCCCEEEE
Confidence 56778886 6788884 58899999999999987764211 1245667776 7889999998 999999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|+++..+.++.-.+ . . ...+..|++++++++|+++|++..+++|..||.+
T Consensus 104 vd~~Gk~l~~~~~~~--~---------------~------------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 104 VNMKGEVLSKTEFET--G---------------I------------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp ECTTSCEEEEEEECC--S---------------C------------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred EeCCCCEEEEEeccC--C---------------C------------CcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 999888777763211 0 0 0124468899999999999999999999999998
Q ss_pred CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEE
Q 004302 426 SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLN 505 (762)
Q Consensus 426 ~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkid 505 (762)
|++.--+... ..|+ .+.. ..+++++|++..++||..+|
T Consensus 155 -G~~~w~~~~~-------------------------------------~~~~---~~~~-~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 155 -GQLLNSVKLS-------------------------------------GTPF---SSAF-LDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp -SCEEEEEECS-------------------------------------SCCC---EEEE-CTTSCEEEECBTTSEEEEEC
T ss_pred -CCEEEEEECC-------------------------------------CCcc---ceeE-cCCCCEEEEeCCCCeEEEEe
Confidence 5543221110 1121 1222 34688999999999999999
Q ss_pred CCCCc-EEEEe
Q 004302 506 RESGV-CSNFQ 515 (762)
Q Consensus 506 l~~~~-~sti~ 515 (762)
+++|. +-++.
T Consensus 193 ~~tG~~~w~~~ 203 (276)
T 3no2_A 193 LESNRIVRRVN 203 (276)
T ss_dssp TTTCCEEEEEE
T ss_pred CcCCcEEEEec
Confidence 99554 44543
No 249
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.96 E-value=5.4e-10 Score=101.08 Aligned_cols=91 Identities=9% Similarity=-0.157 Sum_probs=68.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+|++||+|||+||++| ++..|.|++++++|++ +.|+.|+.+. .. ++.+++++.
T Consensus 20 ~~~~~lv~f~a~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v~-------- 74 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPC-------QNFAPEFELLARMIKGKVRAGKVDCQA------YP----QTCQKAGIK-------- 74 (122)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTCEEEEEETTT------CH----HHHHHTTCC--------
T ss_pred CCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCeEEEEEeCcC------CH----HHHHHcCCC--------
Confidence 58999999999999876 9999999999999985 9999999875 22 233444432
Q ss_pred CccccccCceE-EEEcCCCCEEEEecC----CcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHEN----SLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G----~~~~~~L~~~l~~ll~~~~ 230 (762)
++|+ +++++.|+ +.+..| ..+.++|.+.|++++....
T Consensus 75 -------~~Pt~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 116 (122)
T 3aps_A 75 -------AYPSVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLETLQ 116 (122)
T ss_dssp -------SSSEEEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred -------ccceEEEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence 3554 56666555 444444 4889999999999987643
No 250
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=1.2e-09 Score=100.18 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=64.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+||++||+|||+||++| ++++|.|++++++|+ ++.++.|+.+. .
T Consensus 24 ~~~~vlv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~~~~vd~~~------~-------------------- 70 (133)
T 2dj3_A 24 PKKDVLIEFYAPWCGHC-------KQLEPIYTSLGKKYKGQKDLVIAKMDATA------N-------------------- 70 (133)
T ss_dssp TTSEEEEEECCTTCSHH-------HHHHHHHHHHHHHHTTSSSEEEEEECTTT------S--------------------
T ss_pred CCCcEEEEEECCCChhH-------HHHHHHHHHHHHHhcCCCCEEEEEecCCc------C--------------------
Confidence 59999999999999876 999999999999997 38888887654 1
Q ss_pred CCCcccccc---CceE-EEEcCCCCEEE-Eec-CCcCHHHHHHHHHHHHHhh
Q 004302 184 NKNFPQMEN---GACY-LLSKDFGNARV-FHE-NSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 184 ~~~~~~~~y---gv~t-~lId~~G~iv~-~~~-G~~~~~~L~~~l~~ll~~~ 229 (762)
..+...| ++|+ +++++.|++.. ... |..+.++|.+.|++++...
T Consensus 71 --~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 71 --DITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp --CCCCSSCCCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred --HHHHhhcCCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 1122234 4665 66776665432 344 6688889999998877543
No 251
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.95 E-value=2.3e-08 Score=104.03 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=116.2
Q ss_pred CCcceEEEccCCCEEEEEeCCC----cEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 265 HFPGCISADESGNRLFLSDSNH----HRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~n----hrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
..|.+|++++ ++++||++.++ +.|+++|.++ ++...+... .....|.+|++++ ++.|||++..
T Consensus 87 ~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~i~~d~-~g~l~v~~~~ 154 (333)
T 2dg1_A 87 ANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL----------STAYCIDDMVFDS-KGGFYFTDFR 154 (333)
T ss_dssp SSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----------SSCCCEEEEEECT-TSCEEEEECC
T ss_pred CCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----------ccCCcccceEECC-CCCEEEEecc
Confidence 5689999995 67899999877 8999999865 443333211 0125699999997 6899999975
Q ss_pred ------CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEE
Q 004302 340 ------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLII 412 (762)
Q Consensus 340 ------NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVA 412 (762)
+.+|.+++.+++.+..+... +..|.+++++++|. |||+
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------------------~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTPIIQN-----------------------------------ISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEEEEEE-----------------------------------ESSEEEEEECTTSSEEEEE
T ss_pred ccccCCCceEEEEeCCCCEEEEeecC-----------------------------------CCcccceEECCCCCEEEEE
Confidence 46899998876655554211 23588999999985 9999
Q ss_pred ECCCCEEEEEECCC-C-cEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCE
Q 004302 413 NRSFETLWIMDLAS-G-EIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNH 490 (762)
Q Consensus 413 D~gN~rI~v~d~~~-g-~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~ 490 (762)
+..+++|++|+.++ + .+..+ . ..... . ..+. ..+.+.+++ .+|+
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~-~--~~~~~---~--------------------------~~~~-~~~~~i~~d-~~G~ 245 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPF-G--ATIPY---Y--------------------------FTGH-EGPDSCCID-SDDN 245 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEE-E--EEEEE---E--------------------------CCSS-SEEEEEEEB-TTCC
T ss_pred eCCCCeEEEEEecCCCcCcccc-c--ceEEE---e--------------------------cCCC-CCCCceEEC-CCCC
Confidence 99999999999853 2 33221 0 00000 0 0000 011223343 4578
Q ss_pred EEEEECCCCEEEEEECCCCcEEEEe
Q 004302 491 ILLCDIVGQRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 491 LYVADt~NhRIrkidl~~~~~sti~ 515 (762)
|||++..+++|.+++.++..+.++.
T Consensus 246 l~v~~~~~~~v~~~d~~g~~~~~~~ 270 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGYPIGQIL 270 (333)
T ss_dssp EEEEEETTTEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCEEEEECCCCCEEEEEE
Confidence 9999999999999999877666654
No 252
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.93 E-value=1.9e-08 Score=108.70 Aligned_cols=199 Identities=13% Similarity=0.036 Sum_probs=108.8
Q ss_pred ccCCcceEEEccC---CCEEEEEeCCC-----cEEEEEcCCCc-E---EEEecCCCCCCCCcccccccCCcceEEEecCC
Q 004302 263 LLHFPGCISADES---GNRLFLSDSNH-----HRIIVFDGNGK-I---LDCIGSCPGFEDGEFESSKLMRPAASFYHKDD 330 (762)
Q Consensus 263 ~L~~P~gIAVD~s---~g~LYVADs~n-----hrI~v~d~~G~-i---~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~ 330 (762)
.+..|.||++++. ++.|||+++.+ ++|.+++.++. + ...+-.-+. .....+.|.+|++++ +
T Consensus 73 g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~------~~~~~h~~~~l~~~p-d 145 (352)
T 2ism_A 73 GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA------RPHGLHSGGRIAFGP-D 145 (352)
T ss_dssp TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC------CTTCCCCCCCEEECT-T
T ss_pred CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC------CCCCCcCCceEEECC-C
Confidence 4678999999986 68999999865 89999997642 1 112210010 012457799999998 6
Q ss_pred CeEEEEeCC-------------CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCC
Q 004302 331 DCLYIVDSE-------------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 397 (762)
Q Consensus 331 g~LYVADt~-------------NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~ 397 (762)
+.|||++.. +++|.++++++. + ..+.+ ..+. .|. ....-...+.+
T Consensus 146 G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~----~-p~~np-f~~~---------~~~-------~~~i~a~G~rn 203 (352)
T 2ism_A 146 GMLYVTTGEVYERELAQDLASLGGKILRLTPEGE----P-APGNP-FLGR---------RGA-------RPEVYSLGHRN 203 (352)
T ss_dssp SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS----B-CTTCT-TTTC---------TTS-------CTTEEEECCSE
T ss_pred CCEEEEECCCCCCccccCCCCCceEEEEEcCCCC----C-CCCCc-ccCC---------CCC-------CccEEEEcCCC
Confidence 799999742 358888887542 1 11100 0000 000 00011234788
Q ss_pred cceEEEcC-CCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCC
Q 004302 398 PWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 476 (762)
Q Consensus 398 P~gIavd~-dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p 476 (762)
|+||++++ +|.|||+|.+++++.. ....++..+..|.- +|.-. +.--...+ .. ......-.+
T Consensus 204 p~g~a~d~~~g~l~v~d~g~~~~~~--~~~dei~~i~~G~n-----yGwp~---~~g~~~~~-~~------~~p~~~~~~ 266 (352)
T 2ism_A 204 PQGLAWHPKTGELFSSEHGPSGEQG--YGHDEVNLIVPGGN-----YGWPR---VVGRGNDP-RY------RDPLYFWPQ 266 (352)
T ss_dssp ECCCEECTTTCCEEEEEECC--------CCCEEEEECTTCB-----CCTTT---CCSCCCCT-TS------CCCSEECTT
T ss_pred cccEEEECCCCCEEEEEcCCCCCCC--CCCeEEEEeccCCc-----CCCCc---ccCCCCCC-CC------cCCeEecCC
Confidence 99999999 7999999999988542 11223433322210 11100 00000000 00 000000000
Q ss_pred -CcceeeeEEecCCEEEEEECCCCEEEEEECCCC
Q 004302 477 -YAGLISSSIAFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 477 -~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
..+.+. +..+|.+||+|..+++|.++++++.
T Consensus 267 ~~ap~G~--~~~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 267 GFPPGNL--AFFRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp CCCEEEE--EEETTEEEEEETTTTEEEEEEEEEE
T ss_pred CCCCcce--EEECCEEEEEECCCCEEEEEEECCC
Confidence 122333 4468899999999999999998754
No 253
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.93 E-value=1.2e-09 Score=92.12 Aligned_cols=78 Identities=12% Similarity=-0.025 Sum_probs=62.0
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcc
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFP 188 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~ 188 (762)
++|+.|||+||++| ++..|.|++++++|++ +.++.|+.+. +. .+
T Consensus 3 ~~vv~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~vd~~~------~~----------------------~~ 47 (85)
T 1nho_A 3 VNIEVFTSPTCPYC-------PMAIEVVDEAKKEFGDKIDVEKIDIMV------DR----------------------EK 47 (85)
T ss_dssp CCEEEESCSSSCCS-------TTHHHHHHHHHHHHCSSCCEEEECTTT------CG----------------------GG
T ss_pred EEEEEEECCCCcch-------HHHHHHHHHHHHHhcCCeEEEEEECCC------CH----------------------HH
Confidence 56899999999865 9999999999999995 9999998765 11 12
Q ss_pred cccc---CceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 189 QMEN---GACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 189 ~~~y---gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
...| ++|++++ +|++ +..|..+.++|.+.|++++
T Consensus 48 ~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 48 AIEYGLMAVPAIAI--NGVV--RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp GGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHHHHHHHC
T ss_pred HHhCCceeeCEEEE--CCEE--EEccCCCHHHHHHHHHHHh
Confidence 2333 4678888 8888 7788888889999888764
No 254
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=99.56 Aligned_cols=89 Identities=6% Similarity=-0.181 Sum_probs=68.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+|+ +||+|||+||++| ++++|.|++++++|++ +.|+.|+.+. .. ++.+++++
T Consensus 22 ~~~-vlv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~v~~~~vd~~~------~~----~~~~~~~v-------- 75 (126)
T 1x5e_A 22 EGD-WMIEFYAPWCPAC-------QNLQPEWESFAEWGEDLEVNIAKVDVTE------QP----GLSGRFII-------- 75 (126)
T ss_dssp SSE-EEEEEECSSCHHH-------HHHHHHHHHHHHHHGGGTCEEEEEETTT------CH----HHHHHTTC--------
T ss_pred CCC-EEEEEECCCCHHH-------HHHhHHHHHHHHHhccCCeEEEEEECcC------CH----HHHHHcCC--------
Confidence 444 8999999999876 9999999999999984 9999998875 22 23344443
Q ss_pred CCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 185 KNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 185 ~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.++|+ +++ ++|++ .+..|..+.++|.+.|++++.+..
T Consensus 76 -------~~~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~~~~~ 113 (126)
T 1x5e_A 76 -------NALPTIYHC-KDGEF-RRYQGPRTKKDFINFISDKEWKSI 113 (126)
T ss_dssp -------CSSSEEEEE-ETTEE-EECCSCCCHHHHHHHHHTCGGGGS
T ss_pred -------cccCEEEEE-eCCeE-EEeecCCCHHHHHHHHHHHhhccC
Confidence 24565 445 88985 678999999999999988766543
No 255
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.92 E-value=2.1e-09 Score=97.88 Aligned_cols=86 Identities=6% Similarity=-0.138 Sum_probs=65.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
.||++||+|||+||++| +...|.|++++++|+++.|+.|+.+. .. ++.+++++
T Consensus 22 ~~~~vlv~f~a~wC~~C-------~~~~~~l~~l~~~~~~v~~~~vd~~~------~~----~~~~~~~i---------- 74 (118)
T 2f51_A 22 APGLVLVDFFATWCGPC-------QRLGQILPSIAEANKDVTFIKVDVDK------NG----NAADAYGV---------- 74 (118)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTSEEEEEETTT------CH----HHHHHTTC----------
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHCCCeEEEEEECCC------CH----HHHHhcCC----------
Confidence 48999999999999877 99999999999999779999999875 22 23344443
Q ss_pred ccccccCceE-EEEcC---CCCEEEEecCCcCHHHHHHHHHHH
Q 004302 187 FPQMENGACY-LLSKD---FGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 187 ~~~~~ygv~t-~lId~---~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|+ +++++ +|+++.+..|... ++|++.+++.
T Consensus 75 -----~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~ 111 (118)
T 2f51_A 75 -----SSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKF 111 (118)
T ss_dssp -----CSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred -----CCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence 24565 45554 4999999999876 4466666554
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=7.2e-08 Score=101.25 Aligned_cols=161 Identities=11% Similarity=0.000 Sum_probs=114.6
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.|+.++ ++.||++....++|+++|. +|+++..+ -... ....||+++ ++.||+++..++++.+|
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-----------~FgeGit~~--g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-----------IFAEGLASD--GERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-----------CCEEEEEEC--SSCEEEEESSSCEEEEE
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-----------cceeEEEEe--CCEEEEEEccCCEEEEE
Confidence 789998 6899999999999999998 78877665 3211 113557775 78999999999999999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
|.++..+..-...+ ..+||++.| .+.||++| +.++|+++|+++
T Consensus 122 D~~Tl~~~~ti~~~-----------------------------------~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T 164 (268)
T 3nok_A 122 SGMPPQRERTTRYS-----------------------------------GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDG 164 (268)
T ss_dssp ETTTTEEEEEEECS-----------------------------------SCCCCEEEE-TTEEEEEC-SSSEEEEECTTT
T ss_pred ECCcCcEEEEEeCC-----------------------------------CceeEEecC-CCEEEEEC-CCCEEEEEcCCC
Confidence 99876544322221 036889876 57899999 699999999998
Q ss_pred CcEEE-EEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEE
Q 004302 427 GEIKE-AVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLN 505 (762)
Q Consensus 427 g~I~t-i~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkid 505 (762)
.++.. +-.+.. | .+.. ....+...+|.||++....+.|.+||
T Consensus 165 ~~v~~~I~V~~~------g------------------------------~~v~-~lNeLe~~dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 165 FALVGAVQVKLR------G------------------------------QPVE-LINELECANGVIYANIWHSSDVLEID 207 (268)
T ss_dssp CCEEEEEECEET------T------------------------------EECC-CEEEEEEETTEEEEEETTCSEEEEEC
T ss_pred CeEEEEEEeCCC------C------------------------------cccc-cccccEEeCCEEEEEECCCCeEEEEe
Confidence 76542 211100 0 0100 00112234789999999999999999
Q ss_pred CCCCcEE-EEeecc
Q 004302 506 RESGVCS-NFQFSN 518 (762)
Q Consensus 506 l~~~~~s-ti~~s~ 518 (762)
+.+|.+. +|.+++
T Consensus 208 p~TG~V~~~Idl~~ 221 (268)
T 3nok_A 208 PATGTVVGVIDASA 221 (268)
T ss_dssp TTTCBEEEEEECHH
T ss_pred CCCCcEEEEEECCC
Confidence 9999775 666554
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=3e-08 Score=104.24 Aligned_cols=171 Identities=9% Similarity=-0.065 Sum_probs=118.7
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
.++.|++++ +++||+++..+++|.++|. +++++..+..+ .|.|+.+.++++.|||+| +.++|
T Consensus 66 ~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--------------~~~g~glt~Dg~~l~vs~-gs~~l 128 (266)
T 2iwa_A 66 YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--------------MKDGWGLATDGKILYGSD-GTSIL 128 (266)
T ss_dssp CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC--------------SSSCCEEEECSSSEEEEC-SSSEE
T ss_pred cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC--------------CCCeEEEEECCCEEEEEC-CCCeE
Confidence 456788887 7899999999999999997 67888777432 133343444588999999 68899
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.++|+.+..+..-...|. .| ..+..|.++.+. +|.||++....+.|.++|
T Consensus 129 ~viD~~t~~v~~~I~Vg~---------------~~--------------~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 129 YEIDPHTFKLIKKHNVKY---------------NG--------------HRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp EEECTTTCCEEEEEECEE---------------TT--------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEEECCCCcEEEEEEECC---------------CC--------------cccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 999998865443333331 00 125678999987 899999999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
+.++++...+.-.+ . .. .. .... . .....+.|++++..++.+||+.....+|..
T Consensus 179 ~~tg~V~~~I~~~g-------~-~~-~~-~~~~-------------~---~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 179 AKDGTLLGWILLPN-------L-RK-KL-IDEG-------------F---RDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp TTTCCEEEEEECHH-------H-HH-HH-HHTT-------------C---TTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CCCCcEEEEEECCC-------c-cc-cc-cccc-------------c---cccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99998654321001 0 00 00 0000 0 000123567888788899999999999999
Q ss_pred EECCC
Q 004302 504 LNRES 508 (762)
Q Consensus 504 idl~~ 508 (762)
|++..
T Consensus 233 i~l~~ 237 (266)
T 2iwa_A 233 IKLHL 237 (266)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99765
No 258
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.90 E-value=2.1e-07 Score=98.43 Aligned_cols=159 Identities=11% Similarity=0.178 Sum_probs=121.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|.++++++.+..||++...++.|+++|. +|+.+..+..+ ..|.++++++++..||++...++.|+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-------------~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-------------SSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-------------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-------------CCccceEECCCCCEEEEEECCCCEEE
Confidence 47899999877789999999999999997 77877766431 15899999998888999999889999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d 423 (762)
++|+.++.+......+ ..|.+++++++|. ||++...++.|++||
T Consensus 100 v~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTG-----------------------------------KSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEETTTTEEEEEEECS-----------------------------------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEECCCCeEEEEEeCC-----------------------------------CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 9999887665443221 1478999999876 789999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
..++.+...+.... .+ ...++.+.+..||++...+++|+.
T Consensus 145 ~~~~~~~~~~~~~~-------------------------------------~~---~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 145 TVTKAVINTVSVGR-------------------------------------SP---KGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp TTTTEEEEEEECCS-------------------------------------SE---EEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCcEEEEEecCC-------------------------------------Cc---ceEEECCCCCEEEEEeCCCCEEEE
Confidence 98876544322111 01 123444556678888888899999
Q ss_pred EECCCCcEE
Q 004302 504 LNRESGVCS 512 (762)
Q Consensus 504 idl~~~~~s 512 (762)
+|+.++.+.
T Consensus 185 ~d~~~~~~~ 193 (391)
T 1l0q_A 185 IDTVTNSVI 193 (391)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 998887654
No 259
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.89 E-value=7.1e-08 Score=99.67 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=117.3
Q ss_pred CCcce-EEEccCCCEEEEEeCCCc--EEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 265 HFPGC-ISADESGNRLFLSDSNHH--RIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 265 ~~P~g-IAVD~s~g~LYVADs~nh--rI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
..|.. +++++.+..||+++..++ .|.++|. +++.+..+..+ ..|.+++++|++..||+++..+
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSCEEEEEETT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCEEEEEecCC
Confidence 45777 999988888996665556 9999998 56776655432 3488999999777899999988
Q ss_pred Ce-EEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCC
Q 004302 341 HA-IRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFE 417 (762)
Q Consensus 341 hr-IRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~ 417 (762)
+. |+++++... .+......- . ..-..|.+++++++|. ||+++..++
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~----------------~---------------~~~~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEF----------------I---------------SGGTRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEE----------------E---------------CSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred CceEEEEEECCCCcEeecCCcc----------------c---------------cCCCCccceEECCCCCEEEEEeCCCC
Confidence 88 888876532 221111100 0 0012489999999986 999999999
Q ss_pred EEEEEECCCCcE----EEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEE
Q 004302 418 TLWIMDLASGEI----KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILL 493 (762)
Q Consensus 418 rI~v~d~~~g~I----~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYV 493 (762)
+|++||..++.+ .++ ... ..| ...++.+++..||+
T Consensus 199 ~v~v~d~~~~~~~~~~~~~-~~~-------------------------------------~~~---~~~~~spdg~~l~v 237 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAV-GTN-------------------------------------NLP---GTIVVSRDGSTVYV 237 (331)
T ss_dssp EEEEEECSSTTSCEEEEEE-ECS-------------------------------------SCC---CCEEECTTSSEEEE
T ss_pred eEEEEECCCCcccceeeec-cCC-------------------------------------CCC---ceEEECCCCCEEEE
Confidence 999999987764 111 100 111 22455566677999
Q ss_pred EECCCCEEEEEECCCCcEEEEe
Q 004302 494 CDIVGQRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 494 ADt~NhRIrkidl~~~~~sti~ 515 (762)
++...+.|..+|+.++.+..+.
T Consensus 238 ~~~~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp ECSSEEEEEEEETTTTEEEEEE
T ss_pred EEcCCCEEEEEECCCCceeeec
Confidence 9999999999999998876543
No 260
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.88 E-value=1.7e-07 Score=101.45 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=87.7
Q ss_pred ccCCcceEEEccCCCE-EEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecC---CCeEEEEeC
Q 004302 263 LLHFPGCISADESGNR-LFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD---DDCLYIVDS 338 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~-LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~---~g~LYVADt 338 (762)
.|..|++|++++ +|+ |||++. .++|++++.+|+....+..-+.. .......|.||+++|+ ++.|||+++
T Consensus 16 ~l~~P~~i~~~p-dG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v-----~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 16 KLDHPWALAFLP-DNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDV-----WAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp EESSEEEEEECS-TTCCEEEEET-TTEEEEEETTTEECCCCBSCCCC-----CCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCCCcEEEEEcC-CCCEEEEEeC-CceEEEEeCCCceeeEecCCccc-----ccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 589999999997 677 999997 48999999888754333221100 0011235899999985 799999987
Q ss_pred C-------CCeEEEEeCCCC--EE---EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC
Q 004302 339 E-------NHAIRRADMGRR--VL---ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED 406 (762)
Q Consensus 339 ~-------NhrIRkid~~~g--~I---~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d 406 (762)
. +++|.+++.+.+ .+ .++.- + . +.......+|.+|++++|
T Consensus 89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~-~------------------~---------p~~~~~~h~~~~l~~~pd 140 (353)
T 2g8s_A 89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFR-Q------------------M---------PKLSTGNHFGGRLVFDGK 140 (353)
T ss_dssp EECSSSCEEEEEEEEEECTTSSBEEEEEEEEE-C------------------S---------SCCBSSSCCCCCEEECSS
T ss_pred CCCCCCCceeEEEEEEECCCCCCCCceEEEEE-E------------------C---------CCCCCCcccCccEEECCC
Confidence 5 568988876533 22 22211 0 0 000112446899999999
Q ss_pred CcEEEEEC--C-----------CCEEEEEECCCC
Q 004302 407 DNLLIINR--S-----------FETLWIMDLASG 427 (762)
Q Consensus 407 G~LYVAD~--g-----------N~rI~v~d~~~g 427 (762)
|.|||+.- + ..+|+++++++.
T Consensus 141 G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 141 GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 99999952 2 358999998753
No 261
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.88 E-value=5.9e-08 Score=104.86 Aligned_cols=183 Identities=8% Similarity=-0.021 Sum_probs=121.6
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEE-ecCCCCCCCCcccccccCCcceEEE---ecCCCeEEE-E
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDC-IGSCPGFEDGEFESSKLMRPAASFY---HKDDDCLYI-V 336 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~-iGsG~G~~DG~~~~a~fn~P~GIav---d~~~g~LYV-A 336 (762)
.--+|.++..|+.++.+|+++..+++|.+++++ |.+..+ +..-. .+| .....|.||.+ |+ .+.||| +
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s--~~g----~~~~~~sGl~~~~~D~-~grL~vv~ 83 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS--SNG----DGEQQMSGLSLLTHDN-SKRLFAVM 83 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC--CSS----CCSEEEEEEEESSSSS-CCEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc--ccC----CCcceeeEEEEeccCC-CCcEEEEE
Confidence 456899999998899999999999999999997 444433 21101 001 12345799999 77 488998 6
Q ss_pred eC------------CCCeEEEEeCC---CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceE
Q 004302 337 DS------------ENHAIRRADMG---RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 401 (762)
Q Consensus 337 Dt------------~NhrIRkid~~---~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gI 401 (762)
|. +.+.|.++|+. ++.....+.-. + ..+-+..+.| ..+..|-+|
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~-----~--~~~~~~~~~g--------------~~~~~~nDv 142 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE-----K--VQDEFEKKAG--------------KRPFGVVQS 142 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH-----H--HHHHHHHHHS--------------SCCEEEEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc-----c--cccccccccc--------------ccccCCcee
Confidence 62 46889999987 44433333210 0 0000000001 124458899
Q ss_pred EEcCCCcEEEEECCC-CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcce
Q 004302 402 MKSEDDNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGL 480 (762)
Q Consensus 402 avd~dG~LYVAD~gN-~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~l 480 (762)
++|++|++||+|+.. ..|+++++++..+...+.-.+ . ........
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~--------------------------------~--~~~~~G~n 188 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESG--------------------------------N--GGQRPGYS 188 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCC--------------------------------C--SSSCCSCS
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCC--------------------------------C--cccccCcc
Confidence 999999999999999 999999998765543321110 0 00112234
Q ss_pred eeeEEecCCEEEEEECCCCEEEEEECCC
Q 004302 481 ISSSIAFQNHILLCDIVGQRIMRLNRES 508 (762)
Q Consensus 481 gsav~~~~g~LYVADt~NhRIrkidl~~ 508 (762)
|+++.+.+..|+|+++ ++++.+||+..
T Consensus 189 GIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp EEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred eEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 6777777889999999 99999999884
No 262
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.88 E-value=4.2e-09 Score=105.51 Aligned_cols=90 Identities=8% Similarity=-0.125 Sum_probs=71.0
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC-----CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP-----QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~-----~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
+..+++++|+|||+||+|| ++++|.+++++++|+ ++.++.|+.+. .. +..+++++
T Consensus 131 ~~~~~~~~v~F~a~wC~~C-------~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v--- 190 (226)
T 1a8l_A 131 NIDQDVRILVFVTPTCPYC-------PLAVRMAHKFAIENTKAGKGKILGDMVEAIE------YP----EWADQYNV--- 190 (226)
T ss_dssp TCCSCEEEEEEECSSCTTH-------HHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG------CH----HHHHHTTC---
T ss_pred hcCCCcEEEEEeCCCCCcc-------HHHHHHHHHHHHhcccccCCcEEEEEEEccc------CH----HHHHhCCC---
Confidence 4456666999999999866 999999999999997 59999998764 22 22333332
Q ss_pred eeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++.++|+.+.+..|..+.++|.+.|++++
T Consensus 191 ------------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 191 ------------MAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp ------------CSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ------------cccCeEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence 25677777789999999999999999999988765
No 263
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=98.86 E-value=4.3e-09 Score=97.32 Aligned_cols=82 Identities=6% Similarity=0.058 Sum_probs=63.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
++++|||+|||+||+|| +...|.|++|.++|+++.|+-|+.++ . .+++
T Consensus 22 ~~~~vvv~F~a~wc~~C-------~~~~p~l~~la~~~~~v~f~kvd~d~------~-------~~~~------------ 69 (118)
T 3evi_A 22 EDVWVIIHLYRSSIPMC-------LLVNQHLSLLARKFPETKFVKAIVNS------C-------IQHY------------ 69 (118)
T ss_dssp TTCEEEEEEECTTSHHH-------HHHHHHHHHHHHHCTTSEEEEEEGGG------T-------STTC------------
T ss_pred CCCeEEEEEeCCCChHH-------HHHHHHHHHHHHHCCCCEEEEEEhHH------h-------HHHC------------
Confidence 35699999999999977 99999999999999999999998764 1 0111
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCc-------CHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSL-------DIGMLNKAVE 223 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~-------~~~~L~~~l~ 223 (762)
.-.++||+++=++|+.+.+..|.. +.++|+..|.
T Consensus 70 ---~v~~~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~ 110 (118)
T 3evi_A 70 ---HDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLA 110 (118)
T ss_dssp ---CGGGCSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHH
T ss_pred ---CCCCCCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHH
Confidence 112577888888999999988864 4556666554
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=2.4e-07 Score=97.03 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=113.2
Q ss_pred ceEEEccCCCEEEEEeCC--CcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 268 GCISADESGNRLFLSDSN--HHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~--nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|+.++ ++.||++... +++|+++|. +|+++..+..+.. ....||+++ ++.||+++..++++.
T Consensus 46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----------~FgeGit~~--g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----------YFGEGISDW--KDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----------CCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----------cceeEEEEe--CCEEEEEEeeCCEEE
Confidence 789998 6899999854 569999998 7999887743211 113557775 789999999999999
Q ss_pred EEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
++|+++.. +.++ ..+ ..+||++.| ++.||++| +.++|+++|
T Consensus 111 v~D~~t~~~~~ti-~~~-----------------------------------~eG~glt~d-g~~L~~Sd-Gs~~i~~iD 152 (262)
T 3nol_A 111 VWNIRNLRQVRSF-NYD-----------------------------------GEGWGLTHN-DQYLIMSD-GTPVLRFLD 152 (262)
T ss_dssp EEETTTCCEEEEE-ECS-----------------------------------SCCCCEEEC-SSCEEECC-SSSEEEEEC
T ss_pred EEECccCcEEEEE-ECC-----------------------------------CCceEEecC-CCEEEEEC-CCCeEEEEc
Confidence 99997654 4444 221 046788876 58999999 589999999
Q ss_pred CCCCcEE-EEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEE
Q 004302 424 LASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIM 502 (762)
Q Consensus 424 ~~~g~I~-ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIr 502 (762)
+.+.++. +|-.+.. +.|...+ ..+...+|.||++.-..+.|.
T Consensus 153 p~T~~v~~~I~V~~~------------------------------------g~~~~~l-NELe~~~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 153 PESLTPVRTITVTAH------------------------------------GEELPEL-NELEWVDGEIFANVWQTNKIV 195 (262)
T ss_dssp TTTCSEEEEEECEET------------------------------------TEECCCE-EEEEEETTEEEEEETTSSEEE
T ss_pred CCCCeEEEEEEeccC------------------------------------Ccccccc-ceeEEECCEEEEEEccCCeEE
Confidence 9987653 2211110 1111000 112223789999999999999
Q ss_pred EEECCCCcEE-EEeecc
Q 004302 503 RLNRESGVCS-NFQFSN 518 (762)
Q Consensus 503 kidl~~~~~s-ti~~s~ 518 (762)
+||+.+|.+. +|.+++
T Consensus 196 vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNG 212 (262)
T ss_dssp EECTTTCBEEEEEECTT
T ss_pred EEECCCCcEEEEEECCc
Confidence 9999999876 565554
No 265
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.85 E-value=1.5e-07 Score=99.60 Aligned_cols=161 Identities=10% Similarity=-0.003 Sum_probs=115.5
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
...+..|.+.+.++.++.+|++|...++|+++|.++.....+... ..|.++++++ ++.+||+. .
T Consensus 45 ~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~-------------~~v~~i~~~~-dg~l~v~~--~ 108 (326)
T 2ghs_A 45 ETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP-------------FMGSALAKIS-DSKQLIAS--D 108 (326)
T ss_dssp CSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS-------------SCEEEEEEEE-TTEEEEEE--T
T ss_pred ccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECC-------------CcceEEEEeC-CCeEEEEE--C
Confidence 345677899999987899999999999999999865444333210 2588999997 68899997 3
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECC-----
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS----- 415 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~g----- 415 (762)
+.|.++|..++.+..+.... . + ...+.|.+++++++|.+||++.+
T Consensus 109 ~gl~~~d~~~g~~~~~~~~~-----~-----------~--------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~ 158 (326)
T 2ghs_A 109 DGLFLRDTATGVLTLHAELE-----S-----------D--------------LPGNRSNDGRMHPSGALWIGTMGRKAET 158 (326)
T ss_dssp TEEEEEETTTCCEEEEECSS-----T-----------T--------------CTTEEEEEEEECTTSCEEEEEEETTCCT
T ss_pred CCEEEEECCCCcEEEEeeCC-----C-----------C--------------CCCCCCCCEEECCCCCEEEEeCCCcCCC
Confidence 56999999888877664221 0 0 11346899999999999999864
Q ss_pred -CCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE
Q 004302 416 -FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC 494 (762)
Q Consensus 416 -N~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA 494 (762)
...|++++ ++.+..+..+. ..+ .+.+++.++..||++
T Consensus 159 ~~~~l~~~~--~g~~~~~~~~~-------------------------------------~~~---~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 159 GAGSIYHVA--KGKVTKLFADI-------------------------------------SIP---NSICFSPDGTTGYFV 196 (326)
T ss_dssp TCEEEEEEE--TTEEEEEEEEE-------------------------------------SSE---EEEEECTTSCEEEEE
T ss_pred CceEEEEEe--CCcEEEeeCCC-------------------------------------ccc---CCeEEcCCCCEEEEE
Confidence 46899988 45554332100 011 234555556689999
Q ss_pred ECCCCEEEEEECC--CC
Q 004302 495 DIVGQRIMRLNRE--SG 509 (762)
Q Consensus 495 Dt~NhRIrkidl~--~~ 509 (762)
|+.+++|.+++.+ ++
T Consensus 197 ~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTG 213 (326)
T ss_dssp ETTTCEEEEEEBCTTTC
T ss_pred ECCCCEEEEEEcccccC
Confidence 9999999999986 55
No 266
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.85 E-value=6.5e-07 Score=94.67 Aligned_cols=159 Identities=10% Similarity=0.170 Sum_probs=120.2
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|.++++++.+..||++...++.|+++|. +++.+..+..+ ..|.++++++++..||++...++.|+
T Consensus 117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~v~ 183 (391)
T 1l0q_A 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMSIS 183 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-------------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-------------CCcceEEECCCCCEEEEEeCCCCEEE
Confidence 57899999877789999999999999997 67777665432 23789999998889999999999999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEEC--CCCEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINR--SFETLWI 421 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~--gN~rI~v 421 (762)
.+|+.++........+ ..|.+++++++| .||++.. .++.|++
T Consensus 184 ~~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 184 VIDTVTNSVIDTVKVE-----------------------------------AAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp EEETTTTEEEEEEECS-----------------------------------SEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred EEECCCCeEEEEEecC-----------------------------------CCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 9999887655443221 147889999886 5888876 7899999
Q ss_pred EECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEE
Q 004302 422 MDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRI 501 (762)
Q Consensus 422 ~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRI 501 (762)
||..++.....+.... .+ ...++.+.+..||++...+++|
T Consensus 229 ~d~~~~~~~~~~~~~~-------------------------------------~~---~~~~~s~dg~~l~~s~~~d~~v 268 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-------------------------------------DP---AGIAVTPDGKKVYVALSFXNTV 268 (391)
T ss_dssp EETTTTEEEEEEECCS-------------------------------------SE---EEEEECTTSSEEEEEETTTTEE
T ss_pred EECCCCeEEEEEecCC-------------------------------------Cc---cEEEEccCCCEEEEEcCCCCEE
Confidence 9998876433221110 01 1244555666899999999999
Q ss_pred EEEECCCCcEE
Q 004302 502 MRLNRESGVCS 512 (762)
Q Consensus 502 rkidl~~~~~s 512 (762)
+.+|+.++.+.
T Consensus 269 ~v~d~~~~~~~ 279 (391)
T 1l0q_A 269 SVIDTATNTIT 279 (391)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCcEE
Confidence 99999988665
No 267
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.84 E-value=4.7e-09 Score=96.17 Aligned_cols=87 Identities=6% Similarity=-0.090 Sum_probs=63.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC-----C-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcce
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP-----Q-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPI 180 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~-----~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPV 180 (762)
.+|++||+|||+||+|| ++++|.++++.++|. + +.|+.|+.+. .. ++.+++++.
T Consensus 32 ~~~~vlv~F~a~wC~~C-------~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v~--- 91 (127)
T 3h79_A 32 PEKDVFVLYYVPWSRHS-------VAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK------YP----DVIERMRVS--- 91 (127)
T ss_dssp TTCEEEEEEECTTCHHH-------HHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT------CH----HHHHHTTCC---
T ss_pred CCCCEEEEEECCccHHH-------HHHhHHHHHHHHHHHhcccCCCeEEEEEEccc------cH----hHHHhcCCc---
Confidence 48999999999999877 999999999988652 3 9999998775 22 333444432
Q ss_pred eeCCCCccccccCceE-EEEcCCCCEE-EEecCCcCHHHHHHHHHHH
Q 004302 181 LLSNKNFPQMENGACY-LLSKDFGNAR-VFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 181 l~D~~~~~~~~ygv~t-~lId~~G~iv-~~~~G~~~~~~L~~~l~~l 225 (762)
++|+ +++++.+++. ....|..+.+.|.+.|+++
T Consensus 92 ------------~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 92 ------------GFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126 (127)
T ss_dssp ------------SSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred ------------cCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence 3554 4565555543 5678999999999888764
No 268
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.82 E-value=4.5e-09 Score=109.20 Aligned_cols=75 Identities=8% Similarity=-0.096 Sum_probs=57.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+|++|||+|||+||+|| +..+|.|.+|+++|+++.|+.|+.+. ..+.++ |
T Consensus 132 ~~k~VvV~Fya~wC~~C-------k~l~p~l~~La~~~~~v~f~kVd~d~-----------~~l~~~----~-------- 181 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGC-------DALNSSLICLAAEYPMVKFCKIKASN-----------TGAGDR----F-------- 181 (245)
T ss_dssp TTCEEEEEEECTTSTTH-------HHHHHHHHHHHHHCTTSEEEEEEHHH-----------HCCTTS----S--------
T ss_pred CCCEEEEEEECCCChHH-------HHHHHHHHHHHHHCCCCEEEEEeCCc-----------HHHHHH----C--------
Confidence 69999999999999876 99999999999999999999987531 111111 1
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcC
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLD 214 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~ 214 (762)
.-.++||+++-++|+++.+..|...
T Consensus 182 ---~I~~~PTll~~~~G~~v~~~vG~~~ 206 (245)
T 1a0r_P 182 ---SSDVLPTLLVYKGGELLSNFISVTE 206 (245)
T ss_dssp ---CTTTCSEEEEEETTEEEEEETTGGG
T ss_pred ---CCCCCCEEEEEECCEEEEEEeCCcc
Confidence 1135788766679999999988753
No 269
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.82 E-value=4.7e-09 Score=105.73 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=72.5
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcC
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEY 175 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~ 175 (762)
++...-.+||+++|+|||+||+|| ++++|.|.+++++|++ +.++.|+.+. .. ++.++++
T Consensus 24 ~~~~~~~~~~~v~v~F~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~l~~~~~ 86 (241)
T 3idv_A 24 NFDNFVADKDTVLLEFYAPWCGHC-------KQFAPEYEKIANILKDKDPPIPVAKIDATS------AS----VLASRFD 86 (241)
T ss_dssp THHHHHTTCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHHTSSSCCCEEEEETTT------CH----HHHHHTT
T ss_pred CHHHHHhcCCeEEEEEECCCCHHH-------HHhhHHHHHHHHHHhhcCCceEEEEEeccC------CH----HHHHhcC
Confidence 444434579999999999999977 9999999999998864 8889998765 22 3344444
Q ss_pred CCcceeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 176 ITFPILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 176 itfPVl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
+. ++|++++-++|+.+ ...|..+.++|.+.+.+++...
T Consensus 87 v~---------------~~Pt~~~~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~ 124 (241)
T 3idv_A 87 VS---------------GYPTIKILKKGQAV-DYEGSRTQEEIVAKVREVSQPD 124 (241)
T ss_dssp CC---------------SSSEEEEEETTEEE-ECCSCSCHHHHHHHHHHHHSTT
T ss_pred CC---------------cCCEEEEEcCCCcc-cccCcccHHHHHHHHhhccCcc
Confidence 32 45664444578877 5889999999999998877643
No 270
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=98.81 E-value=1.2e-09 Score=107.95 Aligned_cols=94 Identities=5% Similarity=-0.107 Sum_probs=61.2
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHH---HHHHHHHCC-CeEEEEEEcCCCccCcCCHHH
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEK---VKSIQQSFP-QLQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~---L~~L~~~y~-~v~VvgV~~~~~~~~e~~~~~ 166 (762)
..|..-.+..+..+..+||+|+|+|||+||+|| +...|. ..++++.+. ++.+|-|+.++ ..+-
T Consensus 22 v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~C-------k~m~~~~f~~~~va~~l~~~fv~ikVD~de------~~~l 88 (173)
T 3ira_A 22 VDWYPWGEEAFEKARKENKPVFLSIGYSTCHWC-------HMMAHESFEDEEVAGLMNEAFVSIKVDREE------RPDI 88 (173)
T ss_dssp SCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHH-------HHHHHHTTTCHHHHHHHHHHCEEEEEETTT------CHHH
T ss_pred CCCCCcCHHHHHHHHHhCCCEEEecccchhHhh-------ccccccccCCHHHHHHHHhcCceeeeCCcc------cCcH
Confidence 567766555677777789999999999999976 765551 234444444 38888887764 3333
Q ss_pred HHHHHHhcCCCcceeeCCCCccccccCce-EEEEcCCCCEEEE
Q 004302 167 LVEMLMKEYITFPILLSNKNFPQMENGAC-YLLSKDFGNARVF 208 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D~~~~~~~~ygv~-t~lId~~G~iv~~ 208 (762)
...|..... ......|+| +++++++|+++..
T Consensus 89 ~~~y~~~~q-----------~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 89 DNIYMTVCQ-----------IILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp HHHHHHHHH-----------HHHSCCCSSEEEEECTTSCEEEE
T ss_pred HHHHHHHHH-----------HHcCCCCCcceeeECCCCCceee
Confidence 333432110 001234678 5889999999986
No 271
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.80 E-value=2.2e-07 Score=100.74 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=79.9
Q ss_pred ccCCcceEEEccC---CCEEEEEeCC---C----cEEEEEcCCCc------EEEEecCCCCCCCCcccccccCCcceEEE
Q 004302 263 LLHFPGCISADES---GNRLFLSDSN---H----HRIIVFDGNGK------ILDCIGSCPGFEDGEFESSKLMRPAASFY 326 (762)
Q Consensus 263 ~L~~P~gIAVD~s---~g~LYVADs~---n----hrI~v~d~~G~------i~~~iGsG~G~~DG~~~~a~fn~P~GIav 326 (762)
.+..|.||+++|. ++.|||+++. + ++|.+++.++. ...++-.-+ ....+.|.+|++
T Consensus 71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~--------~~~~h~~~~l~~ 142 (354)
T 3a9g_A 71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--------GAYIHNGGRIRF 142 (354)
T ss_dssp TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE--------CCSSCCCCCEEE
T ss_pred CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC--------CCCCcCCceEEE
Confidence 3578999999986 7999999974 4 89999987653 111211001 123567999999
Q ss_pred ecCCCeEEEEeCC-------------CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCC
Q 004302 327 HKDDDCLYIVDSE-------------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ 393 (762)
Q Consensus 327 d~~~g~LYVADt~-------------NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~ 393 (762)
++ ++.|||++.. +++|.+++.++. + ..+.+ .... ..-..
T Consensus 143 ~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~----~-p~~np-f~~~---------------------~i~a~ 194 (354)
T 3a9g_A 143 GP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR----P-PADNP-FPNS---------------------PIWSY 194 (354)
T ss_dssp CT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC----C-CTTSS-STTC---------------------CEEEE
T ss_pred CC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC----C-CCCCC-CCCC---------------------cEEEE
Confidence 98 6789999642 357888887532 1 11100 0000 00123
Q ss_pred CCCCcceEEEcC-CCcEEEEECCCCE
Q 004302 394 SLIFPWHLMKSE-DDNLLIINRSFET 418 (762)
Q Consensus 394 ~L~~P~gIavd~-dG~LYVAD~gN~r 418 (762)
.|.+|+||++++ +|.|||+|.+.++
T Consensus 195 G~rnp~Gla~d~~~g~l~v~d~g~~~ 220 (354)
T 3a9g_A 195 GHRNPQGIDWHRASGVMVATEHGPVG 220 (354)
T ss_dssp CCSCCCEEEECTTTCCEEEEECCSSS
T ss_pred ccCCcceEEEeCCCCCEEEEecCCCC
Confidence 378999999999 7999999999876
No 272
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.79 E-value=1.9e-09 Score=96.10 Aligned_cols=88 Identities=3% Similarity=-0.101 Sum_probs=64.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+||+++|.|||+||++| ++..|.+++++++|++ +.++.|+.+. .. ++.+++++
T Consensus 23 ~~~~~lv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~------~~----~~~~~~~v------ 79 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHC-------KALAPEYAKAAGKLKAEGSEIRLAKVDATE------ES----DLAQQYGV------ 79 (120)
T ss_dssp HCSEEEEEEECSSCSTT-------STTHHHHHHHHHTTTTTCCCCBCEEEETTT------CC----SSHHHHTC------
T ss_pred cCCeEEEEEECCCCHHH-------HHhhHHHHHHHHHHhccCCcEEEEEEcCCC------CH----HHHHHCCC------
Confidence 68999999999999865 9999999999999862 7778877654 10 11122221
Q ss_pred CCCCccccccCceEEEEcCCCCEE--EEecCCcCHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNAR--VFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv--~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++=++|+.+ ....|..+.+.|.+.|++++
T Consensus 80 ---------~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 80 ---------RGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp ---------CSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred ---------CcccEEEEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence 245654333789877 78889999888888887654
No 273
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.79 E-value=1.5e-06 Score=89.14 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=116.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|.++++++.+..||+++...+.|.+++. +|........-. ....|.++++++++..||+++..+++|+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE----------GLDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----------CCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc----------CCCCceEEEECCCCCEEEEecCCCCEEE
Confidence 78999999877889999998999999987 443222221100 1134899999998788999998889999
Q ss_pred EEeCCC-CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEE
Q 004302 345 RADMGR-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIM 422 (762)
Q Consensus 345 kid~~~-g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~ 422 (762)
++|+.+ +.+..+...- .. .. .-..|.+++++++|. ||+++..+++|++|
T Consensus 155 ~~d~~~~~~~~~~~~~~-~~-------------~~---------------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~ 205 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAE-VT-------------TV---------------EGAGPRHMVFHPNEQYAYCVNELNSSVDVW 205 (343)
T ss_dssp EEEECTTSCEEEEEEEE-EE-------------CS---------------TTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCceeeecccc-cc-------------cC---------------CCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 999876 6554432000 00 00 012588999999986 99999999999999
Q ss_pred ECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 423 DLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 423 d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
+.+ ++.+..+. .... .+.. ..+ ...+...++++++..||+++..++.
T Consensus 206 ~~~~~~g~~~~~~--------~~~~-----------~~~~-----------~~~-~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 206 ELKDPHGNIECVQ--------TLDM-----------MPEN-----------FSD-TRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp ESSCTTSCCEEEE--------EEEC-----------SCTT-----------CCS-CCCEEEEEECTTSSEEEEEETTTTE
T ss_pred EecCCCCcEEEEe--------eccc-----------cCcc-----------ccc-cCCccceEECCCCCEEEEEecCCCE
Confidence 984 34432110 0000 0000 000 0111234555667789999999999
Q ss_pred EEEEECC--CCcEEE
Q 004302 501 IMRLNRE--SGVCSN 513 (762)
Q Consensus 501 Irkidl~--~~~~st 513 (762)
|..++++ ++....
T Consensus 255 i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSK 269 (343)
T ss_dssp EEEEEECTTSCCEEE
T ss_pred EEEEEEcCCCCceEE
Confidence 9999998 554443
No 274
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.79 E-value=3.7e-07 Score=97.34 Aligned_cols=182 Identities=9% Similarity=-0.017 Sum_probs=116.0
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
...|.+++++|.+..||++|.++++|++++.+ |++... +.-... ..-..|.+++++|++..|||++..++
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~-~~~~~~-------~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV-GSVDAP-------DPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE-EEEECS-------STTCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe-eeEecC-------CCCCCCCEeEECCCCCEEEEEECCCC
Confidence 35789999998777899999999999999874 765422 110000 00135999999998889999998888
Q ss_pred eEEEEeCC--CCEEE----EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEE-EcCCC-cEEEEE
Q 004302 342 AIRRADMG--RRVLE----TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM-KSEDD-NLLIIN 413 (762)
Q Consensus 342 rIRkid~~--~g~I~----TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIa-vd~dG-~LYVAD 413 (762)
.|.+++.+ ++.+. ++..... +..|. .+ .. .....|.+++ +++|| .||+++
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~g~---------~~----------~~--~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPP-GIPDR---------DP----------ET--GKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCT-TCCCB---------CT----------TT--SSBSEEEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCC-CcCCc---------cc----------cc--ccccccccEEEECCCCCEEEEEC
Confidence 99887643 45432 2211100 00000 00 00 0133699999 99997 589999
Q ss_pred CCCC-----EEEEEECC-CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEe-
Q 004302 414 RSFE-----TLWIMDLA-SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIA- 486 (762)
Q Consensus 414 ~gN~-----rI~v~d~~-~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~- 486 (762)
.+.+ +|.+|+.+ +|.+..+..-.. ..+ ..| ...++++
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~~-----------------------------~~~---~~~a~sp~ 317 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSP----TPT-----------------------------SGG---HSNAVSPC 317 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEE----CSS-----------------------------CCT---TCCCEEEC
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeee----cCC-----------------------------CCc---ccceecCC
Confidence 8776 89999875 566543210000 000 001 1245566
Q ss_pred --cCCEEEEEECCCCEEEEEECCCCcE
Q 004302 487 --FQNHILLCDIVGQRIMRLNRESGVC 511 (762)
Q Consensus 487 --~~g~LYVADt~NhRIrkidl~~~~~ 511 (762)
++..||+++..+++|+.++.++..+
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 5789999999999999998877643
No 275
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=98.27 E-value=6.4e-10 Score=96.77 Aligned_cols=88 Identities=7% Similarity=-0.047 Sum_probs=66.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+++|.||++||++| .+..|.++++.++|++ +.++.|+.+. .. ++.+++++
T Consensus 18 ~~~~~~v~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~----~~~~~~~v--------- 71 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPC-------RMIAPIIEELAKEYEGKVKVVKVNVDE------NP----NTAAQYGI--------- 71 (106)
Confidence 58999999999999865 9999999999999985 8888887664 11 11222221
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++....|..+.++|.+.|++++
T Consensus 72 ------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 106 (106)
T 2yj7_A 72 ------RSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106 (106)
Confidence 23565444389999999999998888888887653
No 276
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.77 E-value=9.2e-07 Score=94.29 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=109.1
Q ss_pred cceEEEccCCCE--EEEEe------C------CCcEEEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEEecCC
Q 004302 267 PGCISADESGNR--LFLSD------S------NHHRIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDD 330 (762)
Q Consensus 267 P~gIAVD~s~g~--LYVAD------s------~nhrI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~ 330 (762)
|.+++++|.+.. +|+++ . ..+.|.+++. +|++...+..-. . .....|.+++++|++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~~spdG 156 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE-Y-------QENTGIHGMVFDPTE 156 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE-C-------CTTCCEEEEEECTTS
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE-e-------CCCCcceEEEECCCC
Confidence 777899975553 45565 1 3555666554 677654432100 0 012469999999987
Q ss_pred CeEEEEeCCCCeEEEEeCC-CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-c
Q 004302 331 DCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-N 408 (762)
Q Consensus 331 g~LYVADt~NhrIRkid~~-~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~ 408 (762)
..||++|.++++|++++.. ++.+..+.... .. ..-..|++++++++| .
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~---~~---------------------------~~g~~p~~~~~spdg~~ 206 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVD---AP---------------------------DPGDHPRWVAMHPTGNY 206 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEE---CS---------------------------STTCCEEEEEECTTSSE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEe---cC---------------------------CCCCCCCEeEECCCCCE
Confidence 7899999999999999987 66554331110 00 001259999999998 6
Q ss_pred EEEEECCCCEEEEEECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeee-EE
Q 004302 409 LLIINRSFETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISS-SI 485 (762)
Q Consensus 409 LYVAD~gN~rI~v~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsa-v~ 485 (762)
||+++..+++|.+|+.+ +|.+..... .... .|..+. ...... ...+.+...+ ++
T Consensus 207 l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~-----------~~~~~~----g~~~~~-~~~~~~~~i~~~s 263 (365)
T 1jof_A 207 LYALMEAGNRICEYVIDPATHMPVYTHH-------SFPL-----------IPPGIP----DRDPET-GKGLYRADVCALT 263 (365)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEEEEE-------EEES-----------SCTTCC----CBCTTT-SSBSEEEEEEEEC
T ss_pred EEEEECCCCeEEEEEEeCCCCcEEEccc-------eEEc-----------CCCCcC----Cccccc-ccccccccEEEEC
Confidence 89999988888887654 555321000 0000 000000 000000 0001123456 66
Q ss_pred ecCCEEEEEECCCC-----EEEEEECC-CCcEEE
Q 004302 486 AFQNHILLCDIVGQ-----RIMRLNRE-SGVCSN 513 (762)
Q Consensus 486 ~~~g~LYVADt~Nh-----RIrkidl~-~~~~st 513 (762)
+++..||+++...+ +|..++++ ++.++.
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 67778999998766 99999985 566554
No 277
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.75 E-value=3.2e-07 Score=97.01 Aligned_cols=121 Identities=11% Similarity=0.050 Sum_probs=89.1
Q ss_pred cCCcceEEEccCCCEEEEEeCC------CcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 264 LHFPGCISADESGNRLFLSDSN------HHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~------nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
...|.++++|+ +|++||++.+ ..+|++++ +|++..... .+..|.++++++++..|||+|
T Consensus 133 ~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~-------------~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 133 GNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA-------------DISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp TEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE-------------EESSEEEEEECTTSCEEEEEE
T ss_pred CCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeC-------------CCcccCCeEEcCCCCEEEEEE
Confidence 45788999996 6789998863 57999999 887665432 134588999998777899999
Q ss_pred CCCCeEEEEeCC--CC-EE---EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEE
Q 004302 338 SENHAIRRADMG--RR-VL---ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLI 411 (762)
Q Consensus 338 t~NhrIRkid~~--~g-~I---~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYV 411 (762)
+.+++|.+++.. ++ .+ ..+.... .....|.++++|++|+|||
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--------------------------------~~~~~p~gi~~d~~G~lwv 245 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDST--------------------------------GIKGGMDGSVCDAEGHIWN 245 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECT--------------------------------TSSSEEEEEEECTTSCEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECC--------------------------------CCCCCCCeeEECCCCCEEE
Confidence 999999999974 44 21 0110000 0013589999999999999
Q ss_pred EECCCCEEEEEECCCCcEEE
Q 004302 412 INRSFETLWIMDLASGEIKE 431 (762)
Q Consensus 412 AD~gN~rI~v~d~~~g~I~t 431 (762)
++.++++|++|++++..+.+
T Consensus 246 a~~~~~~v~~~d~~g~~~~~ 265 (326)
T 2ghs_A 246 ARWGEGAVDRYDTDGNHIAR 265 (326)
T ss_dssp EEETTTEEEEECTTCCEEEE
T ss_pred EEeCCCEEEEECCCCCEEEE
Confidence 99999999999995444433
No 278
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.74 E-value=4.9e-09 Score=100.09 Aligned_cols=92 Identities=12% Similarity=-0.161 Sum_probs=71.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
.+++|||.|||+|| .|+|| +...|.|++|.++|++ +.|+-|++|+ -.+...+++|
T Consensus 33 ~~~~vlVdF~a~~c---rCgpC--k~iaPvleela~e~~g~~v~~~KVdvDe----------~~~lA~~ygV-------- 89 (140)
T 2qgv_A 33 QAPDGVVLLSSDPK---RTPEV--SDNPVMIGELLHEFPDYTWQVAIADLEQ----------SEAIGDRFGA-------- 89 (140)
T ss_dssp TCSSEEEEECCCTT---TCTTT--THHHHHHHHHHTTCTTSCCEEEECCHHH----------HHHHHHHHTC--------
T ss_pred CCCCEEEEEeCCcc---cCCcH--HHHHhHHHHHHHHcCCCeEEEEEEECCC----------CHHHHHHcCC--------
Confidence 56788999999994 23456 9999999999999975 8998887664 2233344432
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++||+++=++|+++.+..|..++++|.+.|++++..
T Consensus 90 -------~sIPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l~~ 126 (140)
T 2qgv_A 90 -------FRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (140)
T ss_dssp -------CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred -------ccCCEEEEEECCEEEEEEecCCCHHHHHHHHHHHhcC
Confidence 2467888889999999999999999999999988843
No 279
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.74 E-value=1.1e-06 Score=92.66 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=115.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC--CCcEEE---EecC-CCCCCCCcccccccCCcceEEEecCCCeEEEEeC
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG--NGKILD---CIGS-CPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS 338 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~--~G~i~~---~iGs-G~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt 338 (762)
..|..+++| ++.||+++...+.|.+++. +|.+.. .+.. +.+.. ........|++++++|++..|||++.
T Consensus 100 ~~p~~~~~d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 100 ADPCYLTTN--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD---KERQTMPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp SCEEEEEEC--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC---TTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEC--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC---ccccCCCcceEEEECCCCCEEEEEeC
Confidence 478889984 7899999999999999986 343221 1111 11100 01122346899999997778999999
Q ss_pred CCCeEEEEeCCCCE-------EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EE
Q 004302 339 ENHAIRRADMGRRV-------LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LL 410 (762)
Q Consensus 339 ~NhrIRkid~~~g~-------I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LY 410 (762)
++++|++++.+... +... |... . .- ...-..|++++++++|. ||
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~-~~~~-~-------------~~-------------~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTK-GTPE-A-------------FK-------------VAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEE-EEEE-E-------------EE-------------CCTTCCEEEEEECTTSSEEE
T ss_pred CCCEEEEEEEcCCCCcccccceeec-cccc-c-------------ee-------------cCCCCCCeEEEEcCCCCEEE
Confidence 99999998765321 2111 0000 0 00 00123589999999985 99
Q ss_pred EEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCE
Q 004302 411 IINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNH 490 (762)
Q Consensus 411 VAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~ 490 (762)
+++..+++|++|+.+++.+..+..- .. .+ .....+...++++++..
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~--------~~-----------~~---------------~~~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTV--------AA-----------DT---------------VNAQGSGDIHLSPDGKY 272 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEE--------ES-----------CS---------------SCCCCEEEEEECTTSSE
T ss_pred EEcCCCCeEEEEEecCCceEEeEEE--------ec-----------CC---------------CCCCCcccEEECCCCCE
Confidence 9999999999999887765433100 00 00 00001133556667778
Q ss_pred EEEEECC-CCEEEEEECC--CCcEEEE
Q 004302 491 ILLCDIV-GQRIMRLNRE--SGVCSNF 514 (762)
Q Consensus 491 LYVADt~-NhRIrkidl~--~~~~sti 514 (762)
||+++.. +++|..++++ ++..+.+
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 9999999 8999998875 5655443
No 280
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.74 E-value=1.8e-08 Score=103.91 Aligned_cols=93 Identities=5% Similarity=-0.215 Sum_probs=71.5
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC-----CCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF-----PQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y-----~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
+++|+++|++|||+||++| +..+|.+++++++| +++.+..|+.+. ..+ ..+++++
T Consensus 135 ~~~~~~~vv~F~a~wC~~C-------~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~------~~~----~~~~~~V--- 194 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYC-------PYAVLLAHMFAYEAWKQGNPVILSEAVEAYE------NPD----IADKYGV--- 194 (243)
T ss_dssp HCCSCEEEEEEECSSCSSH-------HHHHHHHHHHHHHHHHTTCCCEEEEEEETTT------CHH----HHHHTTC---
T ss_pred HcCCCcEEEEEECCCCCCc-------HHHHHHHHHHHHHcccccCCcEEEEEEECcc------CHH----HHHHcCC---
Confidence 5789999999999999866 99999999999999 558888888764 221 2223332
Q ss_pred eeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCC
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENS 233 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s 233 (762)
.++|+++| +|+++ +.|..+.++|.+.|.+.+.....+.
T Consensus 195 ------------~~vPt~~i--~G~~~--~~G~~~~~~l~~~l~~~~~~~~~~~ 232 (243)
T 2hls_A 195 ------------MSVPSIAI--NGYLV--FVGVPYEEDFLDYVKSAAEGRLTVK 232 (243)
T ss_dssp ------------CSSSEEEE--TTEEE--EESCCCHHHHHHHHHHHHTTCCCCC
T ss_pred ------------eeeCeEEE--CCEEE--EeCCCCHHHHHHHHHHHhhcccccC
Confidence 25677777 68765 7899999999999999887755553
No 281
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=98.73 E-value=1.2e-09 Score=105.33 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=67.1
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHH--HCCCeEEEEEEcCCCccCcCCHH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQ--SFPQLQVIGFLHGCSTISAVDQT 165 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~--~y~~v~VvgV~~~~~~~~e~~~~ 165 (762)
+....|...-...+..+...||+|||+|||+||+|| +...|.+.+..+ ++.+..|+.|+++.. . .+.
T Consensus 24 ~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~C-------k~m~p~~~~~~~~~~~~~~~fv~V~vD~e--~-~~~- 92 (151)
T 3ph9_A 24 GDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYS-------QALKKVFAQNEEIQEMAQNKFIMLNLMHE--T-TDK- 92 (151)
T ss_dssp CTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHH-------HHHHHHHHHCHHHHHHHHHTCEEEEESSC--C-SCG-
T ss_pred cCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhH-------HHHHHHHhcCHHHHHHhhcCeEEEEecCC--c-hhh-
Confidence 556778743323455555679999999999999977 998888876421 222223445555430 0 000
Q ss_pred HHHHHHHhcCCCcceeeCCCCccccccCceE-EEEcCCCCEEEEecCC-------cCHHHHHHHHHHHH
Q 004302 166 RLVEMLMKEYITFPILLSNKNFPQMENGACY-LLSKDFGNARVFHENS-------LDIGMLNKAVEELI 226 (762)
Q Consensus 166 ~v~~f~~k~~itfPVl~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~-------~~~~~L~~~l~~ll 226 (762)
..+ ..-.++|+ ++++++|+++.+..|. ..++++.+.|+.+-
T Consensus 93 -----~~~---------------~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~ 141 (151)
T 3ph9_A 93 -----NLS---------------PDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMK 141 (151)
T ss_dssp -----GGC---------------TTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHH
T ss_pred -----Hhh---------------cCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHH
Confidence 000 11146785 7889999999999998 55566666555544
No 282
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.72 E-value=2.6e-08 Score=82.73 Aligned_cols=73 Identities=4% Similarity=-0.001 Sum_probs=54.4
Q ss_pred EEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccc
Q 004302 111 LVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQ 189 (762)
Q Consensus 111 VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~ 189 (762)
+.|+|||+||++| ++..|.++++.++|++ +.++.|+ . . +..+++++
T Consensus 2 ~~v~f~a~wC~~C-------~~~~~~l~~~~~~~~~~~~~~~v~--~-------~----~~~~~~~v------------- 48 (77)
T 1ilo_A 2 MKIQIYGTGCANC-------QMLEKNAREAVKELGIDAEFEKIK--E-------M----DQILEAGL------------- 48 (77)
T ss_dssp EEEEEECSSSSTT-------HHHHHHHHHHHHHTTCCEEEEEEC--S-------H----HHHHHHTC-------------
T ss_pred cEEEEEcCCChhH-------HHHHHHHHHHHHHcCCceEEEEec--C-------H----HHHHHCCC-------------
Confidence 4689999999866 9999999999999985 8888875 2 1 22233332
Q ss_pred cccCceEEEEcCCCCEEEEecCCc-CHHHHHHHH
Q 004302 190 MENGACYLLSKDFGNARVFHENSL-DIGMLNKAV 222 (762)
Q Consensus 190 ~~ygv~t~lId~~G~iv~~~~G~~-~~~~L~~~l 222 (762)
.++|++++ +|+++.+ |.. +.++|++.|
T Consensus 49 --~~~Pt~~~--~G~~~~~--G~~~~~~~l~~~l 76 (77)
T 1ilo_A 49 --TALPGLAV--DGELKIM--GRVASKEEIKKIL 76 (77)
T ss_dssp --SSSSCEEE--TTEEEEC--SSCCCHHHHHHHC
T ss_pred --CcCCEEEE--CCEEEEc--CCCCCHHHHHHHh
Confidence 25677777 8888776 887 777777654
No 283
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.72 E-value=1.5e-06 Score=89.02 Aligned_cols=179 Identities=11% Similarity=0.097 Sum_probs=116.4
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
..|.++++++.+..||+++..+++|.+++.+ |++.......... ..-..|.++++++++..||+++..+++
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~pdg~~l~~~~~~~~~ 201 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT-------VEGAGPRHMVFHPNEQYAYCVNELNSS 201 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC-------STTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc-------CCCCCcceEEECCCCCEEEEEeCCCCE
Confidence 3588999998778899999888999999873 6654322000000 011358899999977789999999999
Q ss_pred EEEEeCC--CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEE
Q 004302 343 IRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETL 419 (762)
Q Consensus 343 IRkid~~--~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI 419 (762)
|+.++.. ++.+..+..... .. .+. .....|.+++++++| .||+++..++.|
T Consensus 202 i~~~~~~~~~g~~~~~~~~~~--~~-----------~~~-------------~~~~~~~~i~~s~dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 202 VDVWELKDPHGNIECVQTLDM--MP-----------ENF-------------SDTRWAADIHITPDGRHLYACDRTASLI 255 (343)
T ss_dssp EEEEESSCTTSCCEEEEEEEC--SC-----------TTC-------------CSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEEecCCCCcEEEEeeccc--cC-----------ccc-------------cccCCccceEECCCCCEEEEEecCCCEE
Confidence 9999984 343322211000 00 000 113478899999987 689999999999
Q ss_pred EEEECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 420 WIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 420 ~v~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
++|+.+ ++....+.. .. ..+.+ ...++++++..||+++..
T Consensus 256 ~v~d~~~~~~~~~~~~~--------~~---------------------------~~~~~---~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 256 TVFSVSEDGSVLSKEGF--------QP---------------------------TETQP---RGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp EEEEECTTSCCEEEEEE--------EE---------------------------CSSSC---CCEEECTTSSEEEEECTT
T ss_pred EEEEEcCCCCceEEeee--------ec---------------------------CCCcc---ceEEECCCCCEEEEecCC
Confidence 999987 444332210 00 00011 225555667789999998
Q ss_pred CCEEEEE--ECCCCcEEEE
Q 004302 498 GQRIMRL--NRESGVCSNF 514 (762)
Q Consensus 498 NhRIrki--dl~~~~~sti 514 (762)
++.|..+ +.+++....+
T Consensus 298 ~~~v~v~~~d~~~g~~~~~ 316 (343)
T 1ri6_A 298 SHHISVYEIVGEQGLLHEK 316 (343)
T ss_dssp TCEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEcCCCceeeEc
Confidence 8998887 6667766544
No 284
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.69 E-value=1.9e-06 Score=88.13 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=91.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC------
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS------ 338 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt------ 338 (762)
.|.++++++.++.+|+++...++|.++|. +|+.+..+..+.. + ..-..|.+++++++++.||+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---E----ERVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---T----EEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---c----cccccccceEECCCCCEEEEEeccccccc
Confidence 48899999877799999999999999997 6777765543210 0 01135899999997779999962
Q ss_pred -----CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEE
Q 004302 339 -----ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLII 412 (762)
Q Consensus 339 -----~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVA 412 (762)
.++.|+++|..++.+......+ ..|.+++++++|. ||++
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSRRKAFEAP-----------------------------------RQITMLAWARDGSKLYGL 152 (337)
T ss_dssp SCEEECCCEEEEEETTTTEEEEEEECC-----------------------------------SSCCCEEECTTSSCEEEE
T ss_pred ccccccCceEEEEECCCCcEEEEEeCC-----------------------------------CCcceeEECCCCCEEEEe
Confidence 3589999999877654332211 1378899999876 9998
Q ss_pred ECCCCEEEEEECCCCcEEEE
Q 004302 413 NRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 413 D~gN~rI~v~d~~~g~I~ti 432 (762)
++.|++||..++.+...
T Consensus 153 ---~~~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 153 ---GRDLHVMDPEAGTLVED 169 (337)
T ss_dssp ---SSSEEEEETTTTEEEEE
T ss_pred ---CCeEEEEECCCCcEeee
Confidence 47899999998876543
No 285
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.67 E-value=6.5e-08 Score=97.32 Aligned_cols=90 Identities=2% Similarity=-0.218 Sum_probs=69.9
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+.+++++|++|||+||++| ++.+|.+++++++|+++.++.|+.+. .. +..+++++
T Consensus 133 ~~~~~~~~v~F~a~wC~~C-------~~~~~~~~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v-------- 187 (229)
T 2ywm_A 133 VVDIPIEIWVFVTTSCGYC-------PSAAVMAWDFALANDYITSKVIDASE------NQ----DLAEQFQV-------- 187 (229)
T ss_dssp TCCSCEEEEEEECTTCTTH-------HHHHHHHHHHHHHCTTEEEEEEEGGG------CH----HHHHHTTC--------
T ss_pred hcCCCeEEEEEECCCCcch-------HHHHHHHHHHHHHCCCeEEEEEECCC------CH----HHHHHcCC--------
Confidence 3456777999999999866 99999999999999879999998765 22 23334433
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.++|++++ +|+ +.+..|..+.++|.+.|.+++...
T Consensus 188 -------~~~Pt~~~--~G~-~~~~~G~~~~~~l~~~l~~~~~~~ 222 (229)
T 2ywm_A 188 -------VGVPKIVI--NKG-VAEFVGAQPENAFLGYIMAVYEKL 222 (229)
T ss_dssp -------CSSSEEEE--GGG-TEEEESCCCHHHHHHHHHHHHHHH
T ss_pred -------cccCEEEE--CCE-EEEeeCCCCHHHHHHHHHHHhhhh
Confidence 24677777 788 566889999999999999888753
No 286
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.66 E-value=2.8e-08 Score=101.53 Aligned_cols=92 Identities=7% Similarity=-0.078 Sum_probs=66.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.+|++||+|||+||+|| ++++|.+++++++|++ +.|+.|+++. + .-.+..+++++.
T Consensus 29 ~~~~vlv~F~a~wC~~C-------~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------~--~~~~l~~~~~v~----- 88 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHC-------IAFAPTWXALAEDVKAWRPALYLAALDCAE------E--TNSAVCRDFNIP----- 88 (244)
T ss_dssp CSSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTGGGTTTEEEEEEETTS------T--TTHHHHHHTTCC-----
T ss_pred CCCeEEEEEECCcCHHH-------HHHHHHHHHHHHHHHhccCcEEEEEEeCCc------h--hhHHHHHHcCCC-----
Confidence 46999999999999977 9999999999999974 9999999853 0 112344455542
Q ss_pred CCCCccccccCceE-EEEcC-----CCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 183 SNKNFPQMENGACY-LLSKD-----FGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~-----~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
++|+ +++++ +|..+ ...| .+.+.|.+.|.+++....
T Consensus 89 ----------~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 89 ----------GFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp ----------SSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred ----------ccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 2343 45554 23333 4455 688999999999998754
No 287
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.66 E-value=3.5e-08 Score=112.82 Aligned_cols=94 Identities=6% Similarity=-0.043 Sum_probs=74.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.||+|||+|||+||+|| ++++|.+++++++|++ +.|+.|+++. +.-.++.++++|.
T Consensus 29 ~~k~vlV~FyA~WC~pC-------k~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------d~~~~l~~~~~V~----- 88 (519)
T 3t58_A 29 SSSAWAVEFFASWCGHA-------IAFAPTWKELANDVKDWRPALNLAVLDCAE--------ETNSAVCREFNIA----- 88 (519)
T ss_dssp CSSEEEEEEECTTSHHH-------HHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------GGGHHHHHHTTCC-----
T ss_pred CCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------cccHHHHHHcCCc-----
Confidence 47999999999999977 9999999999999975 9999999864 1123344455442
Q ss_pred CCCCccccccCceE-EEEcC---CCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 183 SNKNFPQMENGACY-LLSKD---FGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~---~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
++|+ +++++ +|+.+....|..+.+.|.+.|.+++.+..
T Consensus 89 ----------~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 89 ----------GFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp ----------SBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred ----------ccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 3453 67776 78888888899999999999999998754
No 288
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.66 E-value=1.5e-08 Score=92.71 Aligned_cols=46 Identities=13% Similarity=-0.124 Sum_probs=40.9
Q ss_pred CCCCCCEEEEEEecc-------CCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCC
Q 004302 104 FKRGGAFLVLAGRFV-------DNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 104 sd~rGK~VvLnFWAt-------WC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~ 156 (762)
.+.+||+|||+|||+ ||+|| ++++|.|++++++|++ +.|+.|++++
T Consensus 20 ~~~~~~~v~v~F~a~~~~~~~~wC~~C-------~~~~p~l~~~~~~~~~~~~~~~vd~~~ 73 (123)
T 1wou_A 20 EQHNGKTIFAYFTGSKDAGGKSWCPDC-------VQAEPVVREGLKHISEGCVFIYCQVGE 73 (123)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHH-------HHHHHHHHHHGGGCCTTEEEEEEECCC
T ss_pred HHhCCCEEEEEEEccCCCCCCCcCHHH-------HHhhHHHHHHHHHcCCCcEEEEEECCC
Confidence 344699999999999 99977 9999999999999985 9999999863
No 289
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=1.3e-06 Score=91.45 Aligned_cols=165 Identities=11% Similarity=0.016 Sum_probs=113.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
+..||+++ +++||+++..+++++++|. +++.+..+..+ ..+.|++.| ++.||++| +.++|+
T Consensus 88 FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-------------~eG~glt~d--g~~L~~Sd-Gs~~i~ 149 (262)
T 3nol_A 88 FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-------------GEGWGLTHN--DQYLIMSD-GTPVLR 149 (262)
T ss_dssp CEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEECS-------------SCCCCEEEC--SSCEEECC-SSSEEE
T ss_pred ceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEECC-------------CCceEEecC--CCEEEEEC-CCCeEE
Confidence 44678887 7899999999999999998 68888877542 135667764 78999999 478999
Q ss_pred EEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
++|+.+.. +.++ ..+. .| ..+..+-.+... +|.||++....+.|.++|
T Consensus 150 ~iDp~T~~v~~~I-~V~~---------------~g--------------~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 150 FLDPESLTPVRTI-TVTA---------------HG--------------EELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EECTTTCSEEEEE-ECEE---------------TT--------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred EEcCCCCeEEEEE-Eecc---------------CC--------------ccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 99998754 4444 2220 01 113445567665 899999999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
+.+|+|...+.-.+ +. . .. .........+.|+|+++..+.|||+.-.=-++..
T Consensus 199 p~tG~V~~~Id~~~--------L~-------~--------~~----~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 199 PETGKVTGIIDLNG--------IL-------A--------EA----GPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp TTTCBEEEEEECTT--------GG-------G--------GS----CSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CCCCcEEEEEECCc--------Cc-------c--------cc----ccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 99998765532221 00 0 00 0000011123578888888999999987777776
Q ss_pred EEC
Q 004302 504 LNR 506 (762)
Q Consensus 504 idl 506 (762)
|.+
T Consensus 252 v~~ 254 (262)
T 3nol_A 252 ITL 254 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 290
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.65 E-value=2.6e-06 Score=91.33 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=94.1
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC----
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---- 338 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---- 338 (762)
-..|.++++++.+..+|++....+.|+++|. +|+.+..+..+ ..|.++++++++..||++..
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-------------GLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-------------SEEEEEEECTTSSEEEEEEEESCT
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-------------CCceEEEEcCCCCEEEEEECCCCc
Confidence 3568899999888899999999999999997 67766655321 23899999998789999985
Q ss_pred ---CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEEC
Q 004302 339 ---ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINR 414 (762)
Q Consensus 339 ---~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~ 414 (762)
.++.|+.+|+.++.+....+.. ..|.+++++++| .+|++..
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPP-----------------------------------GNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEE-----------------------------------ECEEEEEECSSTTEEEEEET
T ss_pred cccCCCeEEEEECCCCcEEeeccCC-----------------------------------CCcceEEECCCCCEEEEEec
Confidence 4668999999877654443221 147889999987 6999999
Q ss_pred CCCEEEEEECCCCcEEE
Q 004302 415 SFETLWIMDLASGEIKE 431 (762)
Q Consensus 415 gN~rI~v~d~~~g~I~t 431 (762)
.+++|++||.+++.+..
T Consensus 323 ~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 323 CCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCcEEE
Confidence 99999999998876543
No 291
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.64 E-value=6.6e-07 Score=99.93 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=86.9
Q ss_pred CCCEEEEEeCCC----cEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC---------CC
Q 004302 275 SGNRLFLSDSNH----HRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---------EN 340 (762)
Q Consensus 275 s~g~LYVADs~n----hrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---------~N 340 (762)
...++||++.+. +.|.+||. +++++..+-.| ..| ||+++|+++.|||+++ ..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------------~~P-gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------------FLP-HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------------SSC-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------------CCC-ceEECCCCCEEEEEeccccccccCCCC
Confidence 368899999865 89999998 68888777553 249 9999999999999996 35
Q ss_pred CeEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC-CC
Q 004302 341 HAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS-FE 417 (762)
Q Consensus 341 hrIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g-N~ 417 (762)
+.|.+||..++.+ .++ ..++.. .......|+++++++|| .|||++.. .+
T Consensus 149 ~~VsviD~~t~~vv~~I-~v~g~~---------------------------r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADI-ELPDAP---------------------------RFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEEEECTTTCCEEEEE-EETTCC---------------------------CCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred CEEEEEECCCCcEEEEE-ECCCcc---------------------------ccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 6899999987654 344 222000 00012479999999986 79999975 89
Q ss_pred EEEEEECCCCcEE
Q 004302 418 TLWIMDLASGEIK 430 (762)
Q Consensus 418 rI~v~d~~~g~I~ 430 (762)
.|.++|..++++.
T Consensus 201 ~VsVID~~t~kvv 213 (426)
T 3c75_H 201 AVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 9999999998754
No 292
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.63 E-value=2.5e-06 Score=91.40 Aligned_cols=155 Identities=16% Similarity=0.256 Sum_probs=114.6
Q ss_pred CcceEEEccCCCEEEEEeC-------CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 266 FPGCISADESGNRLFLSDS-------NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs-------~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.|.++++++.+..||++.. .++.|+++|. +|+.+..++. -..|.+++++++++.||++.
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-------------PGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-------------EECEEEEEECSSTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-------------CCCcceEEECCCCCEEEEEe
Confidence 3889999987789999885 4679999997 5776665532 12488999998777899999
Q ss_pred CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCC
Q 004302 338 SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSF 416 (762)
Q Consensus 338 t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN 416 (762)
..+++|+.+|..++.+......+ ..|.+++++++|. ||+++..+
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIPVF-----------------------------------DKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS-----------------------------------SSEEEEEECTTSSEEEEEECCC
T ss_pred cCCCEEEEEECCCCcEEEEecCC-----------------------------------CCCCeEEEcCCCCEEEEEecCC
Confidence 99999999999877655443221 1478999999875 89988775
Q ss_pred C--------------EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceee
Q 004302 417 E--------------TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 482 (762)
Q Consensus 417 ~--------------rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgs 482 (762)
+ +|++||..++++...+.+.. .+ ...
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-------------------------------------~~---~~~ 406 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-------------------------------------QP---TGL 406 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-------------------------------------SE---EEE
T ss_pred CccccccccccccceEEEEEECCCCcEEEEecCCC-------------------------------------CC---ceE
Confidence 4 99999998877544332211 01 224
Q ss_pred eEEecCCEEEEEECCCCEEEEEECCC
Q 004302 483 SSIAFQNHILLCDIVGQRIMRLNRES 508 (762)
Q Consensus 483 av~~~~g~LYVADt~NhRIrkidl~~ 508 (762)
++++.+..||+++..++.|+.+++++
T Consensus 407 ~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 407 DVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEcCCCCEEEEEECCCCeEEEEEecC
Confidence 45556678999999899999998764
No 293
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.62 E-value=2.6e-06 Score=88.39 Aligned_cols=168 Identities=17% Similarity=0.021 Sum_probs=114.7
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
++.||+++ +++||+++..+++++++|. +++.+..+..+ ..+.|++.+ ++.||++| +.++|.
T Consensus 66 fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-------------~~Gwglt~d--g~~L~vSd-gs~~l~ 127 (243)
T 3mbr_X 66 FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYP-------------GEGWALTSD--DSHLYMSD-GTAVIR 127 (243)
T ss_dssp CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECS-------------SCCCEEEEC--SSCEEEEC-SSSEEE
T ss_pred ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-------------CCceEEeeC--CCEEEEEC-CCCeEE
Confidence 44677887 7999999999999999998 68888777542 136677764 78999999 588999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
++|+.+..+..-...+. .| ..+..+-.+... +|.||++....+.|.++|+
T Consensus 128 ~iDp~t~~~~~~I~V~~---------------~g--------------~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 128 KLDPDTLQQVGSIKVTA---------------GG--------------RPLDNLNELEWV-NGELLANVWLTSRIARIDP 177 (243)
T ss_dssp EECTTTCCEEEEEECEE---------------TT--------------EECCCEEEEEEE-TTEEEEEETTTTEEEEECT
T ss_pred EEeCCCCeEEEEEEEcc---------------CC--------------cccccceeeEEe-CCEEEEEECCCCeEEEEEC
Confidence 99998765433323321 01 124455566665 8999999999999999999
Q ss_pred CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEE
Q 004302 425 ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRL 504 (762)
Q Consensus 425 ~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrki 504 (762)
.+|++...+.-.+ + ... . .... ......+.|+|+++..++|||+.-.=-++..|
T Consensus 178 ~tG~V~~~idl~~--------l-------~~~-~--------~~~~--~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 178 ASGKVVAWIDLQA--------L-------VPD-A--------DALT--DSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp TTCBEEEEEECGG--------G-------STT-T--------TSCC--CTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred CCCCEEEEEECCc--------C-------ccc-c--------cccc--CCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 9998765432111 0 000 0 0000 00011235788888889999999887787777
Q ss_pred ECC
Q 004302 505 NRE 507 (762)
Q Consensus 505 dl~ 507 (762)
.+.
T Consensus 232 ~~~ 234 (243)
T 3mbr_X 232 RLT 234 (243)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 294
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=98.62 E-value=3.3e-08 Score=100.60 Aligned_cols=82 Identities=6% Similarity=-0.117 Sum_probs=62.7
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
-+|++|||+|||+||++| +...|.|.+|+++|+++.|+.|+.+. .
T Consensus 118 ~~~k~vvV~F~a~wC~~C-------~~l~p~l~~la~~~~~v~f~~vd~~~-----------~----------------- 162 (217)
T 2trc_P 118 QKVTTIVVNIYEDGVRGC-------DALNSSLECLAAEYPMVKFCKIRASN-----------T----------------- 162 (217)
T ss_dssp CTTCEEEEEEECTTSTTH-------HHHHHHHHHHHTTCTTSEEEEEEHHH-----------H-----------------
T ss_pred CCCcEEEEEEECCCCccH-------HHHHHHHHHHHHHCCCeEEEEEECCc-----------H-----------------
Confidence 367999999999999866 99999999999999999999886431 0
Q ss_pred Ccccccc---CceEEEEcCCCCEEEEecCCcCH-------HHHHHHHH
Q 004302 186 NFPQMEN---GACYLLSKDFGNARVFHENSLDI-------GMLNKAVE 223 (762)
Q Consensus 186 ~~~~~~y---gv~t~lId~~G~iv~~~~G~~~~-------~~L~~~l~ 223 (762)
.+...| ++|++++=++|+++.+..|..+. ++|++.|.
T Consensus 163 -~l~~~~~i~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~ 209 (217)
T 2trc_P 163 -GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLN 209 (217)
T ss_dssp -TCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHH
T ss_pred -HHHHHCCCCCCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHH
Confidence 011223 46776555799999999987764 66666665
No 295
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=98.62 E-value=5e-08 Score=94.24 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=84.4
Q ss_pred CCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCc-------------------
Q 004302 98 EDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCST------------------- 158 (762)
Q Consensus 98 g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~------------------- 158 (762)
+....+.+-.||++|+.||.+|||+| .+.+|.|+++.++|+++.|+-++++-..
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C-------~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~ 84 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPYC-------RRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKY 84 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCH
T ss_pred CCCCCcCCCCCCEEEEEEECCCCccH-------HHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHH
Confidence 33556667789999999999999866 9999999999999998777766654200
Q ss_pred ----------cCcCCHHHHHHHHHhcCCCccee------------eCCCCcccccc---CceEEEEcCCCCEEEEecCCc
Q 004302 159 ----------ISAVDQTRLVEMLMKEYITFPIL------------LSNKNFPQMEN---GACYLLSKDFGNARVFHENSL 213 (762)
Q Consensus 159 ----------~~e~~~~~v~~f~~k~~itfPVl------------~D~~~~~~~~y---gv~t~lId~~G~iv~~~~G~~ 213 (762)
....+.+.+.+++++.|++...+ ++.......++ |+|+|+|+ |+ ...|..
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i~--g~---~~~G~~ 159 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVVE--DA---LVPGFV 159 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEET--TE---EECSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEEC--CE---EeeCCC
Confidence 00124566777888888876543 12222222333 67799995 43 567999
Q ss_pred CHHHHHHHHHHHHHh
Q 004302 214 DIGMLNKAVEELIMQ 228 (762)
Q Consensus 214 ~~~~L~~~l~~ll~~ 228 (762)
+.+.|++.|++++.+
T Consensus 160 ~~~~l~~~i~~~l~~ 174 (175)
T 3gyk_A 160 EQSQLQDAVDRARKA 174 (175)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988754
No 296
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.61 E-value=2e-09 Score=97.26 Aligned_cols=88 Identities=8% Similarity=-0.153 Sum_probs=58.9
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
.++|++++||++||+|||+||+|| ++++|.|++++++|+ .|-+..+. ..+.-.++.+++++
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C-------~~~~p~~~~~a~~~~---~v~~~~~~------~~~~~~~l~~~~~V--- 64 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHC-------QDQKELFGAAFDQVP---YVECSPNG------PGTPQAQECTEAGI--- 64 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHH-------HHHHHHHGGGGGGSC---EEESCTTC------TTSCCCHHHHHTTC---
T ss_pred hhHHHHhcCCCEEEEEECCCCHHH-------HHHHHHHHHHHHhCC---EEEEeccc------ccchhHHHHHHcCC---
Confidence 567788889999999999999877 999999999998876 33333221 00000112222221
Q ss_pred eeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++||++| +|+. ..|..+.++|.+.+.
T Consensus 65 ------------~~~PT~~i--~G~~---~~G~~~~~~l~~~~~ 91 (106)
T 3kp8_A 65 ------------TSYPTWII--NGRT---YTGVRSLEALAVASG 91 (106)
T ss_dssp ------------CSSSEEEE--TTEE---EESCCCHHHHHHHHT
T ss_pred ------------eEeCEEEE--CCEE---ecCCCCHHHHHHHhC
Confidence 24668777 7764 779899888776654
No 297
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.4e-08 Score=104.10 Aligned_cols=90 Identities=8% Similarity=-0.108 Sum_probs=64.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++|||+|||+||+|| ++++|.+++++++|++ +.|+.|+++. + .-.++.+++++.
T Consensus 34 ~~~~vlV~F~A~wC~~C-------~~~~p~~~~la~~~~~~~~~~~v~~d~------~--~~~~l~~~~~I~-------- 90 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHC-------KKLSSTFRKAAKRLDGVVQVAAVNCDL------N--KNKALCAKYDVN-------- 90 (298)
T ss_dssp SSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTSEEEEEETTS------T--TTHHHHHHTTCC--------
T ss_pred CCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHccCCcEEEEEEccC------c--cCHHHHHhCCCC--------
Confidence 58999999999999977 9999999999999998 9999999874 1 113445555553
Q ss_pred CccccccCceEEEEcCCCC-----------------EEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGN-----------------ARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~-----------------iv~~~~G~~~~~~L~~~l~~ll 226 (762)
++|++++=++|+ ......|..+.+.|.+.+.+.+
T Consensus 91 -------~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 91 -------GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp -------BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred -------ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 234332222343 3556788888888877776543
No 298
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=98.60 E-value=6.1e-07 Score=100.74 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=78.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecC---CCeEEEEeC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD---DDCLYIVDS 338 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~---~g~LYVADt 338 (762)
.|..|++|++++ +|+|||++...++|++++. +|+...+..-...... ......+.||+++|+ ++.|||+++
T Consensus 25 ~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~----~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 25 NLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND----ADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC----TTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc----cCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 589999999996 7899999998889999987 5766544432111100 001234779999986 899999997
Q ss_pred C------------CCeEEEEeCCCC--EE---EEEe-ecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 339 E------------NHAIRRADMGRR--VL---ETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 339 ~------------NhrIRkid~~~g--~I---~Tia-G~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
. .++|.+++.+.+ .+ .++. +.. .....++.+
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-------------------------------~~~~H~~~~ 148 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-------------------------------SSKDHQSGR 148 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-------------------------------CCSSCCEEE
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-------------------------------CCCCCCCCe
Confidence 4 468998876432 22 2221 110 011346899
Q ss_pred EEEcCCCcEEEE
Q 004302 401 LMKSEDDNLLII 412 (762)
Q Consensus 401 Iavd~dG~LYVA 412 (762)
|++++||+|||+
T Consensus 149 l~f~pDG~Lyv~ 160 (454)
T 1cru_A 149 LVIGPDQKIYYT 160 (454)
T ss_dssp EEECTTSCEEEE
T ss_pred EeECCCCeEEEE
Confidence 999999999999
No 299
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=1.2e-06 Score=91.89 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=114.0
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
+..||+++ +++||+++..+++++++|. +++.+..|..+ ..+.|++.| ++.||++| +.++|+
T Consensus 97 FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-------------~eGwGLt~D--g~~L~vSd-Gs~~l~ 158 (268)
T 3nok_A 97 FAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-------------GEGWGLCYW--NGKLVRSD-GGTMLT 158 (268)
T ss_dssp CEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECS-------------SCCCCEEEE--TTEEEEEC-SSSEEE
T ss_pred ceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-------------CceeEEecC--CCEEEEEC-CCCEEE
Confidence 44678886 7899999999999999997 68888877542 125677865 78999999 588999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
++|+++..+..-...+. .| ..+..+-.+... +|.||++....+.|.++|+
T Consensus 159 ~iDp~T~~v~~~I~V~~---------------~g--------------~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 159 FHEPDGFALVGAVQVKL---------------RG--------------QPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp EECTTTCCEEEEEECEE---------------TT--------------EECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred EEcCCCCeEEEEEEeCC---------------CC--------------cccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 99998765443322220 01 124566677776 8999999999999999999
Q ss_pred CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEE
Q 004302 425 ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRL 504 (762)
Q Consensus 425 ~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrki 504 (762)
.+|+|...+.-.+ + ....+. +. ......+.|+|+++..+.|||+.-.=-++..|
T Consensus 209 ~TG~V~~~Idl~~--------L-------~~~~~~-----~~------~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 209 ATGTVVGVIDASA--------L-------TRAVAG-----QV------TNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp TTCBEEEEEECHH--------H-------HHHHTT-----TC------CCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred CCCcEEEEEECCC--------C-------cccccc-----cc------cCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 9998765432111 0 000000 00 00011235688888888999998877777666
Q ss_pred EC
Q 004302 505 NR 506 (762)
Q Consensus 505 dl 506 (762)
.+
T Consensus 263 ~~ 264 (268)
T 3nok_A 263 RL 264 (268)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 300
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.59 E-value=7.5e-06 Score=85.43 Aligned_cols=183 Identities=12% Similarity=0.076 Sum_probs=120.1
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...+.||+.++.++.||++.-.+.+|+++|.+|+++..+.-+ | +..|.||++.+ ++.+||++.++++|
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~-g----------~~D~EGIa~~~-~g~~~vs~E~~~~l 93 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD-F----------VKDLETIEYIG-DNQFVISDERDYAI 93 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS-S----------CSSEEEEEECS-TTEEEEEETTTTEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC-C----------CCChHHeEEeC-CCEEEEEECCCCcE
Confidence 467999999988899997555699999999999999877431 1 35599999996 77899999999999
Q ss_pred EEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCC-EEE
Q 004302 344 RRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFE-TLW 420 (762)
Q Consensus 344 Rkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~-rI~ 420 (762)
.+++.... .+..+.-.. +++... ..=....|||+++++ .||++..... +|+
T Consensus 94 ~~~~v~~~~~i~~~~~~~----------------~~~~~~----------~~N~g~EGLA~d~~~~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIK----------------IPLQES----------PTNCGFEGLAYSRQDHTFWFFKEKNPIEVY 147 (255)
T ss_dssp EEEEECTTCCEEEEEEEE----------------CCCSSC----------CCSSCCEEEEEETTTTEEEEEEESSSEEEE
T ss_pred EEEEcCCCCeeeeeeeec----------------cccccc----------cccCCcceEEEeCCCCEEEEEECcCCceEE
Confidence 98875432 222211000 000000 001136899999874 8999977665 788
Q ss_pred EEEC--CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC
Q 004302 421 IMDL--ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 498 (762)
Q Consensus 421 v~d~--~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N 498 (762)
.++. .+..+ ++. .. +. + .. .... ....+.++++..+++||....+
T Consensus 148 ~~~g~~~~~~l-~i~----------~~------------~~-~-~~----~~~~----~d~S~l~~dp~tg~lliLS~~s 194 (255)
T 3qqz_A 148 KVNGLLSSNEL-HIS----------KD------------KA-L-QR----QFTL----DDVSGAEFNQQKNTLLVLSHES 194 (255)
T ss_dssp EEESTTCSSCC-EEE----------EC------------HH-H-HH----TCCS----SCCCEEEEETTTTEEEEEETTT
T ss_pred EEcccccCCce-eee----------cc------------hh-h-cc----cccc----CCceeEEEcCCCCeEEEEECCC
Confidence 8871 11111 110 00 00 0 00 0000 1113456677789999999999
Q ss_pred CEEEEEECCCCcEEEEeec
Q 004302 499 QRIMRLNRESGVCSNFQFS 517 (762)
Q Consensus 499 hRIrkidl~~~~~sti~~s 517 (762)
+++..+|.++..++.+.+.
T Consensus 195 ~~L~~~d~~g~~~~~~~L~ 213 (255)
T 3qqz_A 195 RALQEVTLVGEVIGEMSLT 213 (255)
T ss_dssp TEEEEECTTCCEEEEEECS
T ss_pred CeEEEEcCCCCEEEEEEcC
Confidence 9999999999988777665
No 301
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.57 E-value=1.5e-06 Score=97.02 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=64.0
Q ss_pred CcceEEEccCCCEEEEEeC---------CCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeE
Q 004302 266 FPGCISADESGNRLFLSDS---------NHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCL 333 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~L 333 (762)
.| +|++++++..|||+++ ..+.|.+||. +++++..+-.+ ..+. ....|.+++++++++.|
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-------~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-------VGTYQWMNALTPDNKNL 191 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-------BSCCGGGSEECTTSSEE
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-------cCCCcceEEEcCCCCEE
Confidence 58 9999999999999997 4678999998 67877665321 1110 12569999999999999
Q ss_pred EEEeCC-CCeEEEEeCCCCEEE
Q 004302 334 YIVDSE-NHAIRRADMGRRVLE 354 (762)
Q Consensus 334 YVADt~-NhrIRkid~~~g~I~ 354 (762)
||++.. .+.|.+||..++.+.
T Consensus 192 yV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEECSSSCEEEEEETTTTEEE
T ss_pred EEEecCCCCeEEEEECCCCeEE
Confidence 999975 789999999987664
No 302
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.57 E-value=2.7e-06 Score=93.81 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=87.4
Q ss_pred cCCCEEEEEeCC----CcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC---------C
Q 004302 274 ESGNRLFLSDSN----HHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---------E 339 (762)
Q Consensus 274 ~s~g~LYVADs~----nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---------~ 339 (762)
|.++++||+|.+ .++|.++|. +++++..+..| ..|. |+++|++..|||+++ .
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-------------~~P~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-------------FLPN-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-------------SSCE-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-------------CCCc-EEECCCCCEEEEEcccccccccCCC
Confidence 358899999997 789999998 68888777654 2385 999999999999985 2
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC-CC
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS-FE 417 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g-N~ 417 (762)
.+.|.+||..++.+..-...+. ++.. ..-.+|+++++++|| .|||++.. .+
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~-g~r~--------------------------~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPD-APRF--------------------------LVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETT-CCCC--------------------------CBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred CCEEEEEECCCCeEEEEEECCC-cccc--------------------------ccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 4679999998876543322220 0000 012379999999986 59999975 78
Q ss_pred EEEEEECCCCcEE
Q 004302 418 TLWIMDLASGEIK 430 (762)
Q Consensus 418 rI~v~d~~~g~I~ 430 (762)
.|.++|..++++.
T Consensus 161 ~VsVID~~t~~vv 173 (386)
T 3sjl_D 161 AVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEETTTTEEE
T ss_pred eEEEEECCCCcEE
Confidence 9999999998764
No 303
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.56 E-value=9.4e-07 Score=91.11 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=88.6
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
+.|+++. .++++||+...++.|+++|. +|+++..+..+. ...|.+++++++++.+||+...++.|++
T Consensus 2 ~~g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 2 DTGPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-----------KFGPGTAMMAPDNRTAYVLNNHYGDIYG 69 (349)
T ss_dssp --CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-----------CCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred Ccccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-----------CCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence 4577777 48899999999999999997 677776654321 1248999999977789999999999999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC---------
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS--------- 415 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g--------- 415 (762)
+|+.++.+......+. .. + ..-..|.+++++++| .||+++..
T Consensus 70 ~d~~t~~~~~~~~~~~--~~------------~--------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 70 IDLDTCKNTFHANLSS--VP------------G--------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp EETTTTEEEEEEESCC--ST------------T--------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred EeCCCCcEEEEEEccc--cc------------c--------------cccccccceEECCCCCEEEEEcccccccccccc
Confidence 9998886654332210 00 0 001258999999987 58888854
Q ss_pred --CCEEEEEECCCCc
Q 004302 416 --FETLWIMDLASGE 428 (762)
Q Consensus 416 --N~rI~v~d~~~g~ 428 (762)
+++|++||..++.
T Consensus 122 ~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 122 VKPPRLEVFSTADGL 136 (349)
T ss_dssp ECCCEEEEEEGGGGG
T ss_pred cCCCeEEEEECCCcc
Confidence 5799999987644
No 304
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.56 E-value=1.3e-07 Score=89.92 Aligned_cols=92 Identities=10% Similarity=-0.122 Sum_probs=60.5
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeE--EEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQ--VIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~--VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+.+||.||+.||. ||+| +..+|.|++++++|+++. |+.|+.+. -.+..+++++
T Consensus 34 ~~~~vv~f~~~~~~---C~~C--~~l~P~l~~la~~~~~v~~~~~~Vd~d~----------~~~la~~~~V--------- 89 (142)
T 2es7_A 34 VGDGVILLSSDPRR---TPEV--SDNPVMIAELLREFPQFDWQVAVADLEQ----------SEAIGDRFNV--------- 89 (142)
T ss_dssp CCSEEEEECCCSCC---------CCHHHHHHHHHHTCTTSCCEEEEECHHH----------HHHHHHTTTC---------
T ss_pred CCCEEEEEECCCCC---CccH--HHHHHHHHHHHHHhcccceeEEEEECCC----------CHHHHHhcCC---------
Confidence 34578899999841 2456 999999999999994487 99987653 1222333332
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.++|| ++| ++|+++.+..|..+.++|.+.|++++....
T Consensus 90 ------~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~~~~ 128 (142)
T 2es7_A 90 ------RRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVDTPA 128 (142)
T ss_dssp ------CSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC---
T ss_pred ------CcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhcccc
Confidence 24565 555 899999999999999999999999887543
No 305
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=98.53 E-value=4.4e-06 Score=90.89 Aligned_cols=128 Identities=15% Similarity=0.038 Sum_probs=87.1
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecC---CCeEEEEe
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD---DDCLYIVD 337 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~---~g~LYVAD 337 (762)
..|..|++|++.+ +|+|||++...++|++++.+ |+...+.+...-+ ......|.||+++|+ ++.|||+.
T Consensus 29 ~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~------~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 29 TGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS------PSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC------CBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred cCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCcee------ecCCCCceeeEeccccccCCEEEEEE
Confidence 3699999999996 68899999989999999874 6654333221000 012356999999984 68999986
Q ss_pred C--CCCeEEEEeCCCCE--------EEEEe-ecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC
Q 004302 338 S--ENHAIRRADMGRRV--------LETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED 406 (762)
Q Consensus 338 t--~NhrIRkid~~~g~--------I~Tia-G~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d 406 (762)
+ ..++|.++....+. ..++. +.. ....-++..|++++|
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p-------------------------------~~~~H~g~~l~fgpD 150 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP-------------------------------KGVIHNGGRIAFGPD 150 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC-------------------------------CCSSCCCCCEEECTT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC-------------------------------CCCCccCccccCCCC
Confidence 5 45688888765411 11111 000 011335778999999
Q ss_pred CcEEEEE-------------CCCCEEEEEECCCC
Q 004302 407 DNLLIIN-------------RSFETLWIMDLASG 427 (762)
Q Consensus 407 G~LYVAD-------------~gN~rI~v~d~~~g 427 (762)
|.|||+- ....+|+++++++.
T Consensus 151 G~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 151 KMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 9999993 23578999998754
No 306
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.52 E-value=9.3e-06 Score=92.69 Aligned_cols=170 Identities=8% Similarity=-0.020 Sum_probs=118.9
Q ss_pred CCcceEEEcc----CCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 265 HFPGCISADE----SGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 265 ~~P~gIAVD~----s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
..|.+|+++| .+..||+++...+.|.++|. +++.+..+-......++.. ...-.+|.+|+++++++.+||+..+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~-~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT-YHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC-EESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccc-cccCCceEEEEECCCCCEEEEEECC
Confidence 4689999998 88999999998999999997 6787776643100011100 0001267899999888999999999
Q ss_pred CCeEEEEeCCCCE---EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECC
Q 004302 340 NHAIRRADMGRRV---LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRS 415 (762)
Q Consensus 340 NhrIRkid~~~g~---I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~g 415 (762)
.++|..+|..+.. +.++ +.+ .+|++++++++|. +|++...
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i-~~~-----------------------------------~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSI-GAA-----------------------------------PFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEE-ECC-----------------------------------SSCCCEEECTTSCEEEEEEGG
T ss_pred CCeEEEEEecCCCcceeEEe-ccC-----------------------------------cCccCceECCCCCEEEEEecC
Confidence 9999999986532 2232 111 1599999999986 8999999
Q ss_pred CCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeE-EecCCEEEEE
Q 004302 416 FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSS-IAFQNHILLC 494 (762)
Q Consensus 416 N~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav-~~~~g~LYVA 494 (762)
.++|.+||..++++...+.... .|....+..+ .+.++.+|++
T Consensus 345 ~~~v~v~D~~tg~l~~~i~~g~-------------------------------------~ph~g~g~~~~~p~~g~~~~s 387 (543)
T 1nir_A 345 SNKVAVIDSKDRRLSALVDVGK-------------------------------------TPHPGRGANFVHPKYGPVWST 387 (543)
T ss_dssp GTEEEEEETTTTEEEEEEECSS-------------------------------------SBCCTTCEEEEETTTEEEEEE
T ss_pred CCeEEEEECCCCeEEEeeccCC-------------------------------------CCCCCCCcccCCCCCccEEEe
Confidence 9999999999987654322100 1111112333 2345789998
Q ss_pred EC-CCCEEEEEECCC
Q 004302 495 DI-VGQRIMRLNRES 508 (762)
Q Consensus 495 Dt-~NhRIrkidl~~ 508 (762)
.. +++.|..|+.++
T Consensus 388 ~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 388 SHLGDGSISLIGTDP 402 (543)
T ss_dssp EBSSSSEEEEEECCT
T ss_pred ccCCCceEEEEEeCC
Confidence 86 678999999987
No 307
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.50 E-value=1.7e-07 Score=86.22 Aligned_cols=87 Identities=6% Similarity=-0.015 Sum_probs=65.8
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCc
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNF 187 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~ 187 (762)
+++|||.||||||+|| +..+|.++++.++ +++.++-|.+++ .++--.+..+++++..
T Consensus 24 ~~~vvi~khatwCgpc-------~~~~~~~e~~~~~-~~v~~~~vdVde------~r~~Sn~IA~~~~V~h--------- 80 (112)
T 3iv4_A 24 NKYVFVLKHSETCPIS-------ANAYDQFNKFLYE-RDMDGYYLIVQQ------ERDLSDYIAKKTNVKH--------- 80 (112)
T ss_dssp CSEEEEEEECTTCHHH-------HHHHHHHHHHHHH-HTCCEEEEEGGG------GHHHHHHHHHHHTCCC---------
T ss_pred CCCEEEEEECCcCHhH-------HHHHHHHHHHhcc-CCceEEEEEeec------CchhhHHHHHHhCCcc---------
Confidence 8999999999999977 9999999999986 668888888875 2222223344455432
Q ss_pred cccccCceEEEEcCCCCEEEE-ecCCcCHHHHHHHH
Q 004302 188 PQMENGACYLLSKDFGNARVF-HENSLDIGMLNKAV 222 (762)
Q Consensus 188 ~~~~ygv~t~lId~~G~iv~~-~~G~~~~~~L~~~l 222 (762)
..|++++=++|+++.. ..+..+.+.|++++
T Consensus 81 -----~sPq~il~k~G~~v~~~SH~~I~~~~l~~~~ 111 (112)
T 3iv4_A 81 -----ESPQAFYFVNGEMVWNRDHGDINVSSLAQAE 111 (112)
T ss_dssp -----CSSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred -----CCCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence 2467667789999986 68899988888765
No 308
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.50 E-value=5.4e-06 Score=94.63 Aligned_cols=168 Identities=8% Similarity=-0.030 Sum_probs=120.4
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC---CCcEEEEecCCCCCCCCcccccccCCcceEEEec----CCCeEEEEeCC
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG---NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHK----DDDCLYIVDSE 339 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~---~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~----~~g~LYVADt~ 339 (762)
|++++++|++..||+++.. +.|.++|. +++++..+-.| ..|.+++++| ++..|||+...
T Consensus 181 ~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g-------------~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG-------------IEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC-------------SEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred cceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC-------------CCcceEEeCCCcCCCCCEEEEEEcc
Confidence 8899999988899999987 99999998 57766655432 2499999999 89999999988
Q ss_pred CCeEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCC
Q 004302 340 NHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFE 417 (762)
Q Consensus 340 NhrIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~ 417 (762)
.+.|.++|..++.+ .++...|. .... ... ..-..|.+|+++++ +.+||+....+
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~---~~~~--------~~~-------------~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGM---TVDT--------QTY-------------HPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEE---CSSS--------CCE-------------ESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCeEEEEeccccccceeecccCc---ccCc--------ccc-------------ccCCceEEEEECCCCCEEEEEECCCC
Confidence 89999999877654 44432220 0000 000 00125789999985 67899999999
Q ss_pred EEEEEECCCCcEE---EEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE
Q 004302 418 TLWIMDLASGEIK---EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC 494 (762)
Q Consensus 418 rI~v~d~~~g~I~---ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA 494 (762)
+|++||..++... ++- .+ ..| ...++++++..+|++
T Consensus 303 ~i~vvd~~~~~~l~~~~i~--~~------------------------------------~~~---~~~~~spdg~~l~va 341 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIG--AA------------------------------------PFL---HDGGWDSSHRYFMTA 341 (543)
T ss_dssp EEEEEECTTSSSCEEEEEE--CC------------------------------------SSC---CCEEECTTSCEEEEE
T ss_pred eEEEEEecCCCcceeEEec--cC------------------------------------cCc---cCceECCCCCEEEEE
Confidence 9999998765321 110 00 111 224566677789999
Q ss_pred ECCCCEEEEEECCCCcEEE
Q 004302 495 DIVGQRIMRLNRESGVCSN 513 (762)
Q Consensus 495 Dt~NhRIrkidl~~~~~st 513 (762)
....+.|..+|..++.+..
T Consensus 342 ~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp EGGGTEEEEEETTTTEEEE
T ss_pred ecCCCeEEEEECCCCeEEE
Confidence 9999999999999987663
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.49 E-value=5.8e-07 Score=98.14 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=84.4
Q ss_pred CCcceEEEccC---CCEEEEEeCC--CcE--EEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 265 HFPGCISADES---GNRLFLSDSN--HHR--IIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 265 ~~P~gIAVD~s---~g~LYVADs~--nhr--I~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
-.|+||.+.+. ..+|||+|.. +++ |++++.++.....+.+-. ...|++|..+++++ +|.+||.+
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~--------g~~~~~pND~~v~~-~G~fyvt~ 182 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--------HKLLPSVNDIVAVG-PEHFYATN 182 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC--------CTTCSSEEEEEEEE-TTEEEEEE
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc--------cCCCCCCceEEEeC-CCCEEecC
Confidence 38999999642 2379999876 455 555667777666664411 13689999999997 78999987
Q ss_pred C-----------------CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 338 S-----------------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 338 t-----------------~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
. ..++|.+++.. .++.++ ..|..|-|
T Consensus 183 ~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~-----------------------------------~~l~~pNG 225 (355)
T 3sre_A 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA-----------------------------------EGFDFANG 225 (355)
T ss_dssp SCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE-----------------------------------EEESSEEE
T ss_pred CcEeCCcccccchhhccCCccEEEEEECC--eEEEee-----------------------------------cCCcccCc
Confidence 5 23577777752 333332 11567999
Q ss_pred EEEcCCC-cEEEEECCCCEEEEEECC
Q 004302 401 LMKSEDD-NLLIINRSFETLWIMDLA 425 (762)
Q Consensus 401 Iavd~dG-~LYVAD~gN~rI~v~d~~ 425 (762)
|++++|| .|||+|+..++|++|+.+
T Consensus 226 ia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 226 INISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 9999996 799999999999999975
No 310
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.47 E-value=7.8e-06 Score=83.53 Aligned_cols=153 Identities=11% Similarity=0.067 Sum_probs=103.4
Q ss_pred EEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEE
Q 004302 278 RLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETV 356 (762)
Q Consensus 278 ~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~Ti 356 (762)
+++|+....+.|.++|. +|+.+..+..+. ....|.++++++++..|||++..++.|+++|+.++.+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD----------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTT----------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCC----------CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee
Confidence 57788888999999998 577776654321 0114899999997779999999999999999877654432
Q ss_pred eecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEEC-----------CCCEEEEEEC
Q 004302 357 YPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINR-----------SFETLWIMDL 424 (762)
Q Consensus 357 aG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~-----------gN~rI~v~d~ 424 (762)
...+. . +. .-..|.+++++++| .||+++. .++.|++||.
T Consensus 72 ~~~~~---~------------~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~ 122 (337)
T 1pby_B 72 IDLST---P------------EE--------------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122 (337)
T ss_dssp EECCB---T------------TE--------------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred EEcCC---c------------cc--------------ccccccceEECCCCCEEEEEecccccccccccccCceEEEEEC
Confidence 22210 0 00 01158899999987 7999963 3689999999
Q ss_pred CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEE
Q 004302 425 ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRL 504 (762)
Q Consensus 425 ~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrki 504 (762)
+++.+...+.. + ..+ ...++++.+..||++ ++.|..+
T Consensus 123 ~~~~~~~~~~~-~------------------------------------~~~---~~~~~s~dg~~l~~~---~~~i~~~ 159 (337)
T 1pby_B 123 ETLSRRKAFEA-P------------------------------------RQI---TMLAWARDGSKLYGL---GRDLHVM 159 (337)
T ss_dssp TTTEEEEEEEC-C------------------------------------SSC---CCEEECTTSSCEEEE---SSSEEEE
T ss_pred CCCcEEEEEeC-C------------------------------------CCc---ceeEECCCCCEEEEe---CCeEEEE
Confidence 88765432211 0 011 123444556678888 4679999
Q ss_pred ECCCCcEE
Q 004302 505 NRESGVCS 512 (762)
Q Consensus 505 dl~~~~~s 512 (762)
|+.++.+.
T Consensus 160 d~~~~~~~ 167 (337)
T 1pby_B 160 DPEAGTLV 167 (337)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEe
Confidence 98887654
No 311
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.47 E-value=2.4e-07 Score=103.72 Aligned_cols=88 Identities=6% Similarity=-0.113 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.||+|||+|||+||+|| ++++|.+++++++|++ +.++.|+.+. . .+ .++
T Consensus 369 ~~k~vlv~f~a~wC~~C-------~~~~p~~~~l~~~~~~~~~v~~~~id~~~------~--~~---~~~---------- 420 (481)
T 3f8u_A 369 ENKDVLIEFYAPWCGHC-------KNLEPKYKELGEKLSKDPNIVIAKMDATA------N--DV---PSP---------- 420 (481)
T ss_dssp TTCEEEEEEECTTBHHH-------HHHHHHHHHHHHHTTTCSSEEEEEEETTS------S--CC---CTT----------
T ss_pred CCCcEEEEEecCcChhH-------HHhhHHHHHHHHHhccCCCEEEEEEECCc------h--hh---Hhh----------
Confidence 59999999999999977 9999999999999986 8888887654 1 00 000
Q ss_pred CCCccccccCceE-EEEcCCCCE-EEEecCCcCHHHHHHHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDFGNA-RVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~G~i-v~~~~G~~~~~~L~~~l~~ll~ 227 (762)
..-.++|+ +++++.|++ +....|..+.++|.+.|++...
T Consensus 421 -----~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 421 -----YEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREAT 461 (481)
T ss_dssp -----CCCCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred -----CCCcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence 11235676 666666664 6778899998888888876544
No 312
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.46 E-value=3.8e-07 Score=108.39 Aligned_cols=92 Identities=9% Similarity=-0.098 Sum_probs=70.9
Q ss_pred ccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcce
Q 004302 102 HFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPI 180 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPV 180 (762)
++.+++|++|+|+|||+||+|| ++++|.|++++++|++ +.|+.|+.++ ... ..+++++.
T Consensus 449 ~~~~~~~~~vlv~F~a~wC~~c-------~~~~p~~~~~a~~~~~~v~~~~vd~~~------~~~----~~~~~~v~--- 508 (780)
T 3apo_A 449 NFPASDKEPWLVDFFAPWSPPS-------RALLPELRKASTLLYGQLKVGTLDCTI------HEG----LCNMYNIQ--- 508 (780)
T ss_dssp TSCTTCCSCEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCEEEEEETTT------CHH----HHHHTTCC---
T ss_pred HHHHcCCCeEEEEEECCCCHHH-------HHHhHHHHHHHHHhcCCeEEEEEeCCC------CHH----HHHHcCCC---
Confidence 3455689999999999999977 9999999999999986 9999998875 222 33344432
Q ss_pred eeCCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 181 LLSNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 181 l~D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
++|+ +++ ++|++ ....|..+.++|.+.+++++.
T Consensus 509 ------------~~Pt~~~~-~~g~~-~~~~g~~~~~~l~~fi~~~~~ 542 (780)
T 3apo_A 509 ------------AYPTTVVF-NQSSI-HEYEGHHSAEQILEFIEDLRN 542 (780)
T ss_dssp ------------SSSEEEEE-ETTEE-EEECSCSCHHHHHHHHHHHHS
T ss_pred ------------cCCeEEEE-cCCce-eeecCcccHHHHHHHHHhhcc
Confidence 2455 445 56776 667799999999999998875
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.44 E-value=6.7e-06 Score=89.75 Aligned_cols=164 Identities=10% Similarity=0.079 Sum_probs=106.8
Q ss_pred cCCcceEEEccCCCEEEEEe------------CCCcEEEEEcCC---CcEEEEecCCCCCCCCcccccccCCcceEEEec
Q 004302 264 LHFPGCISADESGNRLFLSD------------SNHHRIIVFDGN---GKILDCIGSCPGFEDGEFESSKLMRPAASFYHK 328 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVAD------------s~nhrI~v~d~~---G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~ 328 (762)
...|-.|++++ +|.+|++- ....+|+++|.+ ++.....=.+..+ .... -+|+||.+..
T Consensus 49 ~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~-----~~~~-f~PhGi~~~~ 121 (355)
T 3sre_A 49 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL-----DISS-FNPHGISTFI 121 (355)
T ss_dssp CSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSC-----CGGG-CCEEEEEEEE
T ss_pred CCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCC-----CcCc-eeeeeeEEEE
Confidence 46799999997 79999996 257899999985 4443221111001 1112 3799999975
Q ss_pred C---CCeEEEEeCC--CCeEEE--EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceE
Q 004302 329 D---DDCLYIVDSE--NHAIRR--ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 401 (762)
Q Consensus 329 ~---~g~LYVADt~--NhrIRk--id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gI 401 (762)
+ ..+|||+|.. +++|.. ++..++....+ .+- ....|++|-++
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~------------------------------~g~~~~~pND~ 170 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTI------------------------------RHKLLPSVNDI 170 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEE------------------------------CCTTCSSEEEE
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE-ecc------------------------------ccCCCCCCceE
Confidence 2 2379999976 556554 55544543332 210 01348899999
Q ss_pred EEcCCCcEEEEEC-----------------CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCcccccc
Q 004302 402 MKSEDDNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLH 464 (762)
Q Consensus 402 avd~dG~LYVAD~-----------------gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~ 464 (762)
+++++|.+||++. ...+|+++++. .++.+..+
T Consensus 171 ~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~----------------------------- 219 (355)
T 3sre_A 171 VAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG----------------------------- 219 (355)
T ss_dssp EEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE-----------------------------
T ss_pred EEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC-----------------------------
Confidence 9999999999975 23567777662 33322110
Q ss_pred ccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECC
Q 004302 465 QIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE 507 (762)
Q Consensus 465 ~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~ 507 (762)
. ..+.|.++++++..|||+|+..++|.+++.+
T Consensus 220 ----------l-~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 220 ----------F-DFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ----------E-SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ----------C-cccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 0 1224678877888999999999999999986
No 314
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.43 E-value=1.6e-05 Score=86.58 Aligned_cols=83 Identities=14% Similarity=0.004 Sum_probs=62.3
Q ss_pred CcceEEEccCCCEEEEEeC---------CCcEEEEEcC-CCcEEEEecCC-CCCCCCcccccccCCcceEEEecCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDS---------NHHRIIVFDG-NGKILDCIGSC-PGFEDGEFESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~-~G~i~~~iGsG-~G~~DG~~~~a~fn~P~GIavd~~~g~LY 334 (762)
.| +|+++|++..+||++. ..+.|.+||. +++++..+-.+ .+... ....|.+++++|+++.||
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~------~g~~p~~~~~spDG~~l~ 140 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD------VGPYSWMNANTPNNADLL 140 (373)
T ss_pred CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc------cCCCccceEECCCCCEEE
Confidence 58 9999999999999985 3578999998 56776665332 11100 125699999999999999
Q ss_pred EEeCC-CCeEEEEeCCCCEEEEE
Q 004302 335 IVDSE-NHAIRRADMGRRVLETV 356 (762)
Q Consensus 335 VADt~-NhrIRkid~~~g~I~Ti 356 (762)
|+... .+.|.+|| .++.+...
T Consensus 141 v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 141 FFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred EEecCCCCeEEEEE-CCCCEEeE
Confidence 99865 68999999 87765433
No 315
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.43 E-value=2.4e-07 Score=93.09 Aligned_cols=87 Identities=5% Similarity=-0.099 Sum_probs=66.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.+++++|+|||+||++| +.++|.+.+++++|.+ +.++.|+.+. .. ++.+++++.
T Consensus 146 ~~~~~~v~f~a~wC~~C-------~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~------~~----~l~~~~~v~----- 203 (241)
T 3idv_A 146 DADIILVEFYAPWCGHC-------KKLAPEYEKAAKELSKRSPPIPLAKVDATA------ET----DLAKRFDVS----- 203 (241)
T ss_dssp HCSEEEEEEECTTCTGG-------GGTHHHHHHHHHHHHTSSSCCCEEEEETTT------CH----HHHHHTTCC-----
T ss_pred cCCeEEEEEECCCCHHH-------HHhHHHHHHHHHHHhccCCcEEEEEEECCC------CH----HHHHHcCCc-----
Confidence 57999999999999876 9999999999998743 8889988775 22 234444432
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
++|++++-++|+.+. ..|..+.++|.+.|.+.+
T Consensus 204 ----------~~Pt~~~~~~g~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 204 ----------GYPTLKIFRKGRPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp ----------SSSEEEEEETTEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred ----------ccCEEEEEECCeEEE-ecCCCCHHHHHHHHHhhh
Confidence 456655555788877 789999888888887654
No 316
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.42 E-value=1.7e-05 Score=86.37 Aligned_cols=114 Identities=12% Similarity=0.176 Sum_probs=81.4
Q ss_pred CCCEEEEEeC-CCc---EEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC---------C
Q 004302 275 SGNRLFLSDS-NHH---RIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE---------N 340 (762)
Q Consensus 275 s~g~LYVADs-~nh---rI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~---------N 340 (762)
....+||+|. +.+ .|.+||. +++++..+..| ..| +|+++|+++.|||+++. .
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-------------~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-------------FLP-NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-------------CCC-CeEECCCCCEEEEEeccccccccCCCC
Confidence 4678999998 555 8999998 67877666443 248 99999999999999853 4
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC-CCE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS-FET 418 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g-N~r 418 (762)
+.|.+||..+..+..-...++. + ....-..|.++++++|| .|||++.. .+.
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~---~------------------------~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDA---P------------------------RFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCc---c------------------------ccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 6799999876543322222200 0 00012469999999985 69999975 789
Q ss_pred EEEEECCCCcEE
Q 004302 419 LWIMDLASGEIK 430 (762)
Q Consensus 419 I~v~d~~~g~I~ 430 (762)
|.++| +++++.
T Consensus 150 v~viD-~t~~~~ 160 (373)
T 2mad_H 150 VGLVV-QGGSSD 160 (373)
T ss_pred EEEEE-CCCCEE
Confidence 99999 888753
No 317
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.41 E-value=5.2e-06 Score=89.73 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=90.6
Q ss_pred cCCcceEEE---ccCCCEEEE-EeC------------CCcEEEEEcCC----CcEEEEecCCCCCCCC--cccccccCCc
Q 004302 264 LHFPGCISA---DESGNRLFL-SDS------------NHHRIIVFDGN----GKILDCIGSCPGFEDG--EFESSKLMRP 321 (762)
Q Consensus 264 L~~P~gIAV---D~s~g~LYV-ADs------------~nhrI~v~d~~----G~i~~~iGsG~G~~DG--~~~~a~fn~P 321 (762)
...|.||.+ |+. ++|+| +|. +.+.+.++|.. |+.+..+.-. +..+| ......+..|
T Consensus 62 ~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~-~~~~~~~~~~g~~~~~~ 139 (334)
T 2p9w_A 62 EQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE-KVQDEFEKKAGKRPFGV 139 (334)
T ss_dssp SEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH-HHHHHHHHHHSSCCEEE
T ss_pred cceeeEEEEeccCCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc-cccccccccccccccCC
Confidence 456789999 774 99998 663 57899999987 7777666420 00000 0000134458
Q ss_pred ceEEEecCCCeEEEEeCCC-CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 322 AASFYHKDDDCLYIVDSEN-HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 322 ~GIavd~~~g~LYVADt~N-hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
.+|++|+ +|+.||+|+.. ..|.|+++++..+.++.-.. . .......|.|
T Consensus 140 nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~--~---------------------------~~~~~~G~nG 189 (334)
T 2p9w_A 140 VQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWES--G---------------------------NGGQRPGYSG 189 (334)
T ss_dssp EEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECC--C---------------------------CSSSCCSCSE
T ss_pred ceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC--C---------------------------CcccccCcce
Confidence 9999997 89999999999 99999999877666553110 0 0112456899
Q ss_pred EEEcCCCc-EEEEECCCCEEEEEECCC
Q 004302 401 LMKSEDDN-LLIINRSFETLWIMDLAS 426 (762)
Q Consensus 401 Iavd~dG~-LYVAD~gN~rI~v~d~~~ 426 (762)
|++.++|+ |+|++. .++|.+||...
T Consensus 190 Iv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 190 ITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp EEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred EEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 99999985 556666 99999999863
No 318
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=98.41 E-value=2.7e-07 Score=93.19 Aligned_cols=117 Identities=5% Similarity=-0.030 Sum_probs=75.7
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCc-------------CCHHH
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISA-------------VDQTR 166 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e-------------~~~~~ 166 (762)
.+.+...+||++|+.||++||++| ++++|.|+++.++ +++|+.++.+-..... +....
T Consensus 78 ~~~~g~~~~k~~vv~F~d~~Cp~C-------~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~ 148 (216)
T 1eej_A 78 MIVYKAPQEKHVITVFTDITCGYC-------HKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKA 148 (216)
T ss_dssp SEEECCTTCCEEEEEEECTTCHHH-------HHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHH
T ss_pred CeeecCCCCCEEEEEEECCCCHHH-------HHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHH
Confidence 345556689999999999999866 9999999999764 6888777765200000 01123
Q ss_pred HHHHHHhcCCCc---ceeeCCCCcccccc---CceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 167 LVEMLMKEYITF---PILLSNKNFPQMEN---GACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 167 v~~f~~k~~itf---PVl~D~~~~~~~~y---gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
+.+++.+.++++ +..++.......++ |+|++++. +|+ ...|..+.++|++.|+++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~-dG~---~~~G~~~~~~l~~~l~~~~~~~ 213 (216)
T 1eej_A 149 FDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS-NGT---LVPGYQPPKEMKEFLDEHQKMT 213 (216)
T ss_dssp HHHHHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT-TSC---EEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc-CCe---EecCCCCHHHHHHHHHHhhhhc
Confidence 444455555543 22233333334445 45688773 464 4579999999999998877653
No 319
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.41 E-value=2e-06 Score=94.23 Aligned_cols=113 Identities=6% Similarity=-0.101 Sum_probs=85.1
Q ss_pred CCEEEEEeCCCc----EEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC---------CCC
Q 004302 276 GNRLFLSDSNHH----RIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---------ENH 341 (762)
Q Consensus 276 ~g~LYVADs~nh----rI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---------~Nh 341 (762)
..++||++.+.| +|.+||. +++++..+..| ..| |++++|+++.|||+++ ..+
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-------------~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~ 96 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-------------FLS-LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------------TTC-EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeCC-------------CCC-ceEECCCCCEEEEEcccccccccCCCCC
Confidence 478999999988 9999998 67888777553 239 9999999999999994 368
Q ss_pred eEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC-CCE
Q 004302 342 AIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS-FET 418 (762)
Q Consensus 342 rIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g-N~r 418 (762)
.|.+||+.++. +.++. .|+.. .......|+++++++|| .+||++.+ .+.
T Consensus 97 ~VsviD~~T~~vv~~I~-v~~~~---------------------------~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 97 YVEVFDPVTFLPIADIE-LPDAP---------------------------RFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEEECTTTCCEEEEEE-ETTSC---------------------------SCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred EEEEEECCCCCEEEEEE-CCCcc---------------------------ccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 99999998764 44442 22000 00113579999999986 79999976 678
Q ss_pred EEE--EECCCCcEEEE
Q 004302 419 LWI--MDLASGEIKEA 432 (762)
Q Consensus 419 I~v--~d~~~g~I~ti 432 (762)
|.+ +|..+ +.++
T Consensus 149 v~V~~iD~~t--v~~i 162 (368)
T 1mda_H 149 AGLSVPGASD--DQLT 162 (368)
T ss_dssp EEEEETTTEE--EEEE
T ss_pred EEEEEEchhh--ceEE
Confidence 888 88866 4444
No 320
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.40 E-value=3.5e-07 Score=99.92 Aligned_cols=89 Identities=6% Similarity=-0.159 Sum_probs=68.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC------C-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP------Q-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~------~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
+++++||+|||+||++| ++.+|.+++++++++ + +.|+.|+.+. . .+..+++++.
T Consensus 21 ~~~~vlV~F~a~wC~~C-------~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~------~----~~l~~~~~v~-- 81 (382)
T 2r2j_A 21 NADVALVNFYADWCRFS-------QMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ------H----SDIAQRYRIS-- 81 (382)
T ss_dssp HCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTCC---CCEEEEEEETTT------C----HHHHHHTTCC--
T ss_pred cCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc------c----HHHHHhcCCC--
Confidence 47999999999999876 999999999999873 3 8999998775 2 2344455442
Q ss_pred eeeCCCCccccccCceEEEEcCCCCEEEE-ecCCcCHHHHHHHHHHHHH
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNARVF-HENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~iv~~-~~G~~~~~~L~~~l~~ll~ 227 (762)
+.|++++-++|+++.+ ..|..+.+.|.+.|.+.+.
T Consensus 82 -------------~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (382)
T 2r2j_A 82 -------------KYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKS 117 (382)
T ss_dssp -------------EESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHS
T ss_pred -------------cCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhcc
Confidence 3456666678998874 7899999999888887764
No 321
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.40 E-value=1.3e-05 Score=92.43 Aligned_cols=184 Identities=12% Similarity=0.051 Sum_probs=118.9
Q ss_pred EccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC-
Q 004302 272 ADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG- 349 (762)
Q Consensus 272 VD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~- 349 (762)
.|+ ++.+||+..+.|.|.+||. +++++..+..| ..|+++++++++..|||++. .+.|.+||+.
T Consensus 163 ~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-------------~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~ 227 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-------------YAVHISRLSASGRYLFVIGR-DGKVNMIDLWM 227 (567)
T ss_dssp CCG-GGEEEEEETTTTEEEEEETTTCCEEEEEECS-------------SCEEEEEECTTSCEEEEEET-TSEEEEEETTS
T ss_pred cCC-CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-------------CCccceEECCCCCEEEEEcC-CCeEEEEECCC
Confidence 454 6789999999999999998 67888877653 24889999999999999984 5689999983
Q ss_pred -C-CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEc----CCC-cEEEEECCCCEEEEE
Q 004302 350 -R-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKS----EDD-NLLIINRSFETLWIM 422 (762)
Q Consensus 350 -~-g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd----~dG-~LYVAD~gN~rI~v~ 422 (762)
+ ..+.++. .| ..|++|+++ +|| .+||++...+.|.+|
T Consensus 228 ~t~~~v~~i~-~G-----------------------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 228 KEPTTVAEIK-IG-----------------------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCCEEEEEE-CC-----------------------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCcEeEEEe-cC-----------------------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3 3444441 11 148999999 576 799999999999999
Q ss_pred ECCCCcEEEEEc-CC----c-------eeeEEece-----e-----hhhhhhhhccCCccccccccCCcccccCCCCcce
Q 004302 423 DLASGEIKEAVK-GF----S-------KVLEICGV-----L-----VMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGL 480 (762)
Q Consensus 423 d~~~g~I~ti~~-G~----g-------~~~~~~G~-----~-----~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~l 480 (762)
|..+.++...+. +. + ++..++.. + ..+++.+++......+.. ....... .+.
T Consensus 272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-----~~i~~~~-~~~ 345 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-----TEISAER-FLH 345 (567)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-----EEEECCS-SEE
T ss_pred ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-----eeeeccc-ccc
Confidence 998876544322 10 0 11111100 0 001111111110000000 0000000 123
Q ss_pred eeeEEecCCEEEEEECCCCEEEEEECCCCcEE
Q 004302 481 ISSSIAFQNHILLCDIVGQRIMRLNRESGVCS 512 (762)
Q Consensus 481 gsav~~~~g~LYVADt~NhRIrkidl~~~~~s 512 (762)
..++++++.++||++...++|..||..++.+.
T Consensus 346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 44666777899999999999999999998765
No 322
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.39 E-value=2.7e-07 Score=85.40 Aligned_cols=90 Identities=8% Similarity=-0.203 Sum_probs=57.8
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
-+.+.+||+|||.||++| +..-|.+...++... .+.|+-|+++. +
T Consensus 16 ~~~~~~LV~F~A~wC~~C-------k~~~~~i~~~~~~~a~~~~~~l~~vdv~~------~------------------- 63 (116)
T 3dml_A 16 DKAELRLLMFEQPGCLYC-------ARWDAEIAPQYPLTDEGRAAPVQRLQMRD------P------------------- 63 (116)
T ss_dssp ---CEEEEEEECTTCHHH-------HHHHHHTTTTGGGSHHHHHSCEEEEETTS------C-------------------
T ss_pred ccCCCEEEEEECCCCHHH-------HHHHHHHHhhHHHhhhcccceEEEEECCC------C-------------------
Confidence 456789999999999977 554443333222110 14566666654 1
Q ss_pred CCCCccccc---cCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 183 SNKNFPQME---NGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 183 D~~~~~~~~---ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
....+... .++|| ++|+ +|+.+.+..|....+.+.+.|+.++.+.
T Consensus 64 -~~~~la~~~~V~g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 64 -LPPGLELARPVTFTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp -CCTTCBCSSCCCSSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHCCCCCCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHHhhc
Confidence 00011222 36787 5555 9999999999999999999999988764
No 323
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.39 E-value=4.4e-07 Score=102.29 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=67.8
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---------CeEEEEEEcCCCccCcCCHHHHHHHHHhcC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---------QLQVIGFLHGCSTISAVDQTRLVEMLMKEY 175 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---------~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~ 175 (762)
+-++|+|||+|||+||+|| ++++|.+++++++|+ .+.|+.|+.+. . .+..++++
T Consensus 39 ~~~~k~VlV~FyA~WC~pC-------k~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~------~----~~la~~y~ 101 (470)
T 3qcp_A 39 VAPLCPWIVLFYNDGCGAC-------RRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS------E----VDLCRKYD 101 (470)
T ss_dssp TGGGSCEEEEEECTTCHHH-------HHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT------C----HHHHHHTT
T ss_pred hCCCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC------C----HHHHHHcC
Confidence 3457999999999999977 999999999999997 28999999876 3 34556666
Q ss_pred CC-cce--eeCCCC-cccccc-CceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 176 IT-FPI--LLSNKN-FPQMEN-GACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 176 it-fPV--l~D~~~-~~~~~y-gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
|. +|. ++++++ .....| |.. ..+.+ .+....++.++|+..++.|+++..
T Consensus 102 V~~~PTlilf~~gg~~~~~~y~G~r-----~~e~L-~fI~k~l~~~eLe~~~e~Link~~ 155 (470)
T 3qcp_A 102 INFVPRLFFFYPRDSCRSNEECGTS-----SLEHV-AFENSHLEVDELESEVRRLVNKHM 155 (470)
T ss_dssp CCSSCEEEEEEESSCCCTTSCCCCC-----CEEEE-ECSCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCccCeEEEEECCCceEEEEeeCCC-----CHHHH-HHHHHhcCHHHHHHHHHHHhhhcc
Confidence 63 452 222221 111111 110 00112 334455778889999999987754
No 324
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.38 E-value=3.4e-07 Score=102.42 Aligned_cols=89 Identities=4% Similarity=-0.128 Sum_probs=70.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+|+++||+|||+||++| ++.+|.+++++++|++ +.++.|+.+. .. +..+++++.
T Consensus 20 ~~~~~lv~F~a~wC~~C-------~~~~p~~~~~a~~~~~~v~~~~vd~~~------~~----~l~~~~~v~-------- 74 (481)
T 3f8u_A 20 SAGLMLVEFFAPWCGHA-------KRLAPEYEAAATRLKGIVPLAKVDCTA------NT----NTCNKYGVS-------- 74 (481)
T ss_dssp SSSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTCCEEEEETTT------CH----HHHHHTTCC--------
T ss_pred CCCeEEEEEECCCCHHH-------HHhHHHHHHHHHHhcCceEEEEEECCC------CH----HHHHhcCCC--------
Confidence 46999999999999976 9999999999999998 9999998875 22 233444431
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
++|++++-++|+.+....|..+.+.|.+.+.+.+.
T Consensus 75 -------~~Ptl~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 75 -------GYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp -------EESEEEEEETTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred -------CCCEEEEEeCCceeeeecCccCHHHHHHHHHhhcc
Confidence 34566666899988899999999888888876653
No 325
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.38 E-value=7.4e-06 Score=85.46 Aligned_cols=128 Identities=9% Similarity=0.184 Sum_probs=89.6
Q ss_pred cceEEEccCCCEEEEEeCCCc-EEEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 267 PGCISADESGNRLFLSDSNHH-RIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nh-rI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
.-|||+|+.+++||++--... +|+.++. .+.-+.+... +-+ . ....+..|++|++||..+.|||....+++|
T Consensus 123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~-~~~-~---~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD-KAL-Q---RQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp CEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC-HHH-H---HTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred cceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc-hhh-c---cccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 489999998889998876555 8888872 2211122111 000 0 012345699999999999999999999999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
..+|.++..+..+.=.+ |. .|+ ...+..|.|||+|++|+|||+...| .+|+|.
T Consensus 198 ~~~d~~g~~~~~~~L~~-----g~---------~~l------------~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f~ 250 (255)
T 3qqz_A 198 QEVTLVGEVIGEMSLTK-----GS---------RGL------------SHNIKQAEGVAMDASGNIYIVSEPN-RFYRFT 250 (255)
T ss_dssp EEECTTCCEEEEEECST-----TG---------GGC------------SSCCCSEEEEEECTTCCEEEEETTT-EEEEEE
T ss_pred EEEcCCCCEEEEEEcCC-----cc---------CCc------------ccccCCCCeeEECCCCCEEEEcCCc-eEEEEE
Confidence 99999888666652111 10 122 2347899999999999999998775 999998
Q ss_pred CCC
Q 004302 424 LAS 426 (762)
Q Consensus 424 ~~~ 426 (762)
...
T Consensus 251 ~~~ 253 (255)
T 3qqz_A 251 PQS 253 (255)
T ss_dssp C--
T ss_pred ecC
Confidence 754
No 326
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.37 E-value=2.1e-07 Score=110.58 Aligned_cols=90 Identities=9% Similarity=-0.109 Sum_probs=69.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.||+|||+|||+||+|| ++++|.+++++++|++ +.|+.|+.+. .. .+.+++++.
T Consensus 674 ~~~~v~v~F~a~wC~~C-------~~~~p~~~~la~~~~~~~~~~~vd~~~------~~----~~~~~~~v~-------- 728 (780)
T 3apo_A 674 GKTHWVVDFYAPWSGPS-------QNFAPEFELLARMIKGKVRAGKVDCQA------YP----QTCQKAGIK-------- 728 (780)
T ss_dssp CSSCEEEEEECTTCHHH-------HHHHHHHHHHHHHHTTTCEEEEEETTT------CH----HHHHHTTCC--------
T ss_pred CCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCceEEEEECCC------CH----HHHHhcCCC--------
Confidence 58999999999999977 9999999999999976 9999998875 22 233444442
Q ss_pred CccccccCceEEEEcCCCCEEEEecC----CcCHHHHHHHHHHHHHh
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHEN----SLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G----~~~~~~L~~~l~~ll~~ 228 (762)
++|++++=++|+++.+..| ..+.++|.+.|++++.+
T Consensus 729 -------~~Pt~~~~~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~ 768 (780)
T 3apo_A 729 -------AYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 768 (780)
T ss_dssp -------SSSEEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred -------cCCEEEEEcCCCccccccCcccCCcCHHHHHHHHHHHHHH
Confidence 5676433388888766666 57889999999988854
No 327
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=98.36 E-value=6.4e-07 Score=87.96 Aligned_cols=114 Identities=10% Similarity=0.019 Sum_probs=80.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCc---------------------------
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCST--------------------------- 158 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~--------------------------- 158 (762)
.|+++|+.||..|||+| .+..|.|.+|.++|++ +.+.-+.+.-.-
T Consensus 24 ~~~~~i~~f~d~~Cp~C-------~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~ 96 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHC-------YAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFE 96 (192)
T ss_dssp TTSEEEEEEECTTCHHH-------HHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCEEEEEECCCChhH-------HHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 79999999999999866 9999999999999997 777766653100
Q ss_pred ------cCcCCHHHHHHHHHhcCCCccee---eCCC---------Cccccc---cCceEEEEcCCCCEEEEecCCcCHHH
Q 004302 159 ------ISAVDQTRLVEMLMKEYITFPIL---LSNK---------NFPQME---NGACYLLSKDFGNARVFHENSLDIGM 217 (762)
Q Consensus 159 ------~~e~~~~~v~~f~~k~~itfPVl---~D~~---------~~~~~~---ygv~t~lId~~G~iv~~~~G~~~~~~ 217 (762)
..-.+.+.+.+++++.|++-.-+ +++. ...... .|+|+|+| +|+.+....|..+.+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~ 174 (192)
T 3h93_A 97 AIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEE 174 (192)
T ss_dssp HHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHH
T ss_pred HHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHH
Confidence 00125566777777777763211 1111 111122 46789999 5777666668889999
Q ss_pred HHHHHHHHHHhh
Q 004302 218 LNKAVEELIMQQ 229 (762)
Q Consensus 218 L~~~l~~ll~~~ 229 (762)
|.+.|+.++.+.
T Consensus 175 l~~~i~~l~~k~ 186 (192)
T 3h93_A 175 TLKLADYLIEKE 186 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 328
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=98.35 E-value=6.7e-07 Score=88.01 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=79.3
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCcc-------------------------
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTI------------------------- 159 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~------------------------- 159 (762)
..||++|+.||++||++| .+..|.|.++.++|++ +.|+-+.++-.-.
T Consensus 23 ~~~~~~vv~f~d~~Cp~C-------~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~s~~aa~a~~aa~~~g~~~~~~~lf~ 95 (195)
T 3hd5_A 23 TPGKIEVLEFFAYTCPHC-------AAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQALERPDLHPKVFT 95 (195)
T ss_dssp STTCEEEEEEECTTCHHH-------HHHHHHHHHHHHTCCTTEEEEEEECCSSGGGHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCCCeEEEEEECCCCccH-------HHhhHHHHHHHHHCCCCeEEEEEecccCcchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 469999999999999866 9999999999999997 8887777751000
Q ss_pred -------CcCCHHHHHHHHHhcCCCcceee---CCC---------Cccccc---cCceEEEEcCCCCEEEEecCCcCH-H
Q 004302 160 -------SAVDQTRLVEMLMKEYITFPILL---SNK---------NFPQME---NGACYLLSKDFGNARVFHENSLDI-G 216 (762)
Q Consensus 160 -------~e~~~~~v~~f~~k~~itfPVl~---D~~---------~~~~~~---ygv~t~lId~~G~iv~~~~G~~~~-~ 216 (762)
.-.+.+.+.+++++.|++-.-+. ++. .....+ .|+|+|+|+ |+.+.......+. +
T Consensus 96 ~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~vin--g~~~~~g~~~~~~~e 173 (195)
T 3hd5_A 96 AIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAFAVG--GRYMTSPVLAGNDYA 173 (195)
T ss_dssp HHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSSEEEET--TTEEECTTTTTGGGT
T ss_pred HHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCceEEEC--CEEEeCccccCChHH
Confidence 01255667777777777643211 111 111122 367899995 5654433334455 8
Q ss_pred HHHHHHHHHHHhhccC
Q 004302 217 MLNKAVEELIMQQQEN 232 (762)
Q Consensus 217 ~L~~~l~~ll~~~~~~ 232 (762)
.+.+.|+.|+.+..++
T Consensus 174 ~~~~~i~~L~~~~~~~ 189 (195)
T 3hd5_A 174 GALKVVDQLIVQSREG 189 (195)
T ss_dssp THHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999987655
No 329
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.35 E-value=2.3e-05 Score=80.60 Aligned_cols=126 Identities=11% Similarity=0.027 Sum_probs=87.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-----
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE----- 339 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~----- 339 (762)
.|.++++++.++.+|++...++.|.++|. +|+.+..+..+.+ . ...-..|.++++++++..||++...
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~--~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV--P----GEVGRSMYSFAISPDGKEVYATVNPTQRLN 117 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS--T----TEEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc--c----ccccccccceEECCCCCEEEEEcccccccc
Confidence 48899999877789999999999999998 5777665532110 0 0112458999999988899999855
Q ss_pred ------CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEE
Q 004302 340 ------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIIN 413 (762)
Q Consensus 340 ------NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD 413 (762)
++.|+++|+.++.+....... . .-..+.+++++++|.+|+++
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------~---------------~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKPVRTF-----------------P---------------MPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEE-----------------E---------------CCSSCCCEEECTTSCEEEES
T ss_pred cccccCCCeEEEEECCCccccceeeec-----------------c---------------CCCcccceeECCCCcEEEcc
Confidence 578999987643211100000 0 00147889999999999863
Q ss_pred CCCCEEEEEECCCCcEEEE
Q 004302 414 RSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 414 ~gN~rI~v~d~~~g~I~ti 432 (762)
+.|++||..++.+...
T Consensus 166 ---~~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 166 ---PDIYKMDVKTGKYTVA 181 (349)
T ss_dssp ---SSEEEECTTTCCEEEE
T ss_pred ---CcEEEEeCCCCceecc
Confidence 3499999988876543
No 330
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=98.33 E-value=7.5e-07 Score=95.80 Aligned_cols=83 Identities=2% Similarity=-0.134 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
++|+++|+|||+||++| ++.+|.+.+|+++|++ +.++.|+.+. .. .+++
T Consensus 266 ~~k~~lv~f~a~wC~~C-------~~~~p~~~~la~~~~~~~~v~~~~vd~~~------~~------~~~~--------- 317 (361)
T 3uem_A 266 EKKNVFVEFYAPWCGHC-------KQLAPIWDKLGETYKDHENIVIAKMDSTA------NE------VEAV--------- 317 (361)
T ss_dssp TTCEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTCSSEEEEEEETTT------CB------CSSC---------
T ss_pred CCCcEEEEEecCcCHhH-------HHHHHHHHHHHHHhccCCcEEEEEEECCc------cc------hhhc---------
Confidence 68999999999999976 9999999999999986 7777776654 10 0111
Q ss_pred CCCccccccCceE-EEEcCC-CCEEEEecCCcCHHHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDF-GNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~-G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.-.+.|+ +++++. |+.+..+.|..+.++|.+.|+
T Consensus 318 ------~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~ 353 (361)
T 3uem_A 318 ------KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353 (361)
T ss_dssp ------CCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHT
T ss_pred ------CCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHH
Confidence 1124565 566444 677788899999888887765
No 331
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.32 E-value=3e-07 Score=103.72 Aligned_cols=87 Identities=8% Similarity=-0.042 Sum_probs=65.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.||+|||+|||+||+|| ++++|.+++|.++|+ ++.++.|+.+. . ++
T Consensus 375 ~~k~vlv~F~a~wC~~C-------~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------~---------------~~-- 424 (504)
T 2b5e_A 375 PKKDVLVLYYAPWCGHC-------KRLAPTYQELADTYANATSDVLIAKLDHTE------N---------------DV-- 424 (504)
T ss_dssp TTCCEEEEEECTTCHHH-------HHHHHHHHHHHHHHHHHCSSCEEEEEEGGG------C---------------CC--
T ss_pred CCCCEEEEEECCCChhH-------HHHhHHHHHHHHHhhccCCcEEEEEecCCc------c---------------cc--
Confidence 58999999999999977 999999999999987 37777776543 0 00
Q ss_pred CCCCccccccCceEEEEcCCCCE--EEEecCCcCHHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNA--RVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~i--v~~~~G~~~~~~L~~~l~~ll~ 227 (762)
. . ..-.++||+++-++|+. +....|..+.++|.+.|++.+.
T Consensus 425 --~-~-~~v~~~Pt~~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 425 --R-G-VVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp --S-S-CCCSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred --c-c-CCceecCeEEEEeCCceecceEecCCCCHHHHHHHHHhcCC
Confidence 0 0 11235777666588977 6677899998888888887643
No 332
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=98.32 E-value=1.2e-06 Score=85.88 Aligned_cols=113 Identities=10% Similarity=-0.046 Sum_probs=79.4
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCc--------------------------
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCST-------------------------- 158 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~-------------------------- 158 (762)
-+|+++|+.||..|||+ | ...+|.|.+|.++|++ +.+..+.+.-.-
T Consensus 20 ~~~~~~i~~f~d~~Cp~-----C--~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf 92 (195)
T 2znm_A 20 QSGKIEVLEFFGYFCVH-----C--HHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVF 92 (195)
T ss_dssp SSSSEEEEEEECTTSCC-----T--TSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCcEEEEEECCCChh-----H--HHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 46899999999999975 5 9999999999999987 777777653100
Q ss_pred -------cCcCCHHHHHHHHHhc-CCCcceee------------CCCCcccccc---CceEEEEcCCCCEEEEecCCcCH
Q 004302 159 -------ISAVDQTRLVEMLMKE-YITFPILL------------SNKNFPQMEN---GACYLLSKDFGNARVFHENSLDI 215 (762)
Q Consensus 159 -------~~e~~~~~v~~f~~k~-~itfPVl~------------D~~~~~~~~y---gv~t~lId~~G~iv~~~~G~~~~ 215 (762)
..-.+.+.+.+++++. |++.+-+. +........+ |+|+|+|| |+.+ ..|..+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vin--g~~~--~~g~~~~ 168 (195)
T 2znm_A 93 KAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIVG--GKYR--VIFNNGF 168 (195)
T ss_dssp HHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEET--TTEE--ECCCSHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEEC--CEEE--EcCCCCH
Confidence 0012566788888888 98876321 1112222333 67799996 5542 3566778
Q ss_pred HHHHHHHHHHHHhh
Q 004302 216 GMLNKAVEELIMQQ 229 (762)
Q Consensus 216 ~~L~~~l~~ll~~~ 229 (762)
++|.+.|+.++.+.
T Consensus 169 ~~l~~~i~~~l~~~ 182 (195)
T 2znm_A 169 DGGVHTIKELVAKV 182 (195)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999988764
No 333
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.32 E-value=4.1e-05 Score=88.28 Aligned_cols=152 Identities=12% Similarity=0.026 Sum_probs=96.7
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC---CCcEEEEecCCCCCCCCcccccccCCcceEEEe----cCCCeEEEEeC
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG---NGKILDCIGSCPGFEDGEFESSKLMRPAASFYH----KDDDCLYIVDS 338 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~---~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd----~~~g~LYVADt 338 (762)
.|+++++++++..+||++. .+.|.+||. +++++..+-.| ..|.+++++ |++..+||++.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G-------------~~P~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG-------------SEARSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC-------------SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecC-------------CCCceeEEccccCCCCCEEEEEEc
Confidence 6889999998889999974 678999998 67777666543 239999999 58889999999
Q ss_pred CCCeEEEEeCCCCEEEEEeecCCCCCCC-----C-ch---------hhhhhh--ccCccccCCCccC-CC---CCCCCCC
Q 004302 339 ENHAIRRADMGRRVLETVYPTSGISKKN-----N-SL---------WAWIME--KLGFERDNDTKSE-KL---DPQSLIF 397 (762)
Q Consensus 339 ~NhrIRkid~~~g~I~TiaG~G~~~~~G-----~-~~---------~~~~~~--~~G~~~~~~~~~~-~~---~~~~L~~ 397 (762)
..+.|.+||..+..+.....+++....+ . .. ..|++. ..|.-...+.... .+ .-..=.+
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~ 343 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 343 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence 9999999998776544433332100000 0 00 001100 0000000000000 00 0000136
Q ss_pred cceEEEcCCC-cEEEEECCCCEEEEEECCCCcEEE
Q 004302 398 PWHLMKSEDD-NLLIINRSFETLWIMDLASGEIKE 431 (762)
Q Consensus 398 P~gIavd~dG-~LYVAD~gN~rI~v~d~~~g~I~t 431 (762)
|+++.++++| ++||++...++|.++|..++++..
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 8899999986 588999999999999999987643
No 334
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=98.29 E-value=7.6e-06 Score=79.00 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=66.6
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhc-------HHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTF-------EKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~em-------P~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
.-+||+|+|+|++.||.+| ++| |.+.++-++ ++.+|-++.+. ..-.++++++++
T Consensus 39 k~~~K~vlvd~~a~wC~~C--------~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~--------~~~~~l~~~y~v- 99 (153)
T 2dlx_A 39 QMQNKWLMINIQNVQDFAC--------QCLNRDVWSNEAVKNIIRE--HFIFWQVYHDS--------EEGQRYIQFYKL- 99 (153)
T ss_dssp HHHTCEEEEEEECSCTTTH--------HHHHHHTTTCHHHHHHHHH--TEEEEEEESSS--------HHHHHHHHHHTC-
T ss_pred HHcCCeEEEEEECCCCHhH--------HHHHHHhcCCHHHHHHHHc--CeEEEEEecCC--------HhHHHHHHHcCC-
Confidence 3459999999999999866 555 666655432 57777776643 334566666654
Q ss_pred cceeeCCCCccccccCce-EEEEcCC-CCEEEEecCCcCHHHHHHHHHHHHHhhccC
Q 004302 178 FPILLSNKNFPQMENGAC-YLLSKDF-GNARVFHENSLDIGMLNKAVEELIMQQQEN 232 (762)
Q Consensus 178 fPVl~D~~~~~~~~ygv~-t~lId~~-G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~ 232 (762)
.+.| +++||++ |+.+....| .+.+++.+.|++++.+....
T Consensus 100 --------------~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~~ 141 (153)
T 2dlx_A 100 --------------GDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQL 141 (153)
T ss_dssp --------------CSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCSC
T ss_pred --------------CCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCCC
Confidence 2456 4788998 877776655 89999999999998876433
No 335
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.28 E-value=1.5e-06 Score=97.93 Aligned_cols=89 Identities=6% Similarity=-0.099 Sum_probs=69.7
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
+++++||+|||+||++| ++..|.+++++++|++ +.|+.|+.+. . .+..+++++.
T Consensus 30 ~~~~~lv~F~a~wC~~C-------~~~~p~~~~~a~~~~~~~v~~~~vd~~~------~----~~l~~~~~v~------- 85 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHC-------KNMAPEYVKAAETLVEKNITLAQIDCTE------N----QDLCMEHNIP------- 85 (504)
T ss_dssp TCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHTTTTTCEEEEEETTT------C----HHHHHHTTCC-------
T ss_pred cCCeEEEEEECCCCHHH-------HHhHHHHHHHHHHhccCCeEEEEEECCC------C----HHHHHhcCCC-------
Confidence 48999999999999866 9999999999999985 9999998875 2 2345555542
Q ss_pred CCccccccCceEEEEcCCCCE--EEEecCCcCHHHHHHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNA--RVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~i--v~~~~G~~~~~~L~~~l~~ll~ 227 (762)
++|++++=++|+. +....|..+.+.|.+.|.+.+.
T Consensus 86 --------~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 86 --------GFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp --------SSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred --------cCCEEEEEeCCccccceeecCCCCHHHHHHHHHHhcC
Confidence 3455444456876 7788899998888888887664
No 336
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.26 E-value=1.8e-06 Score=92.95 Aligned_cols=86 Identities=10% Similarity=0.013 Sum_probs=63.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHH-------HHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEK-------VKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~-------L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
+++++||+|||+||+ | ++++|. ++++++.+++ +.|+.|+.+. .. +..+++++.
T Consensus 27 ~~~~~lV~F~a~wC~-c-------~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~------~~----~l~~~~~v~ 88 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-D-------KVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK------EA----KLAKKLGFD 88 (350)
T ss_dssp TCSEEEEEEECCSCS-S-------STTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT------TH----HHHHHHTCC
T ss_pred hCCeEEEEEECCCCc-c-------hhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC------CH----HHHHhcCCC
Confidence 479999999999996 6 899999 8999998864 9999998875 22 344455542
Q ss_pred cceeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 178 FPILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 178 fPVl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
+.||+++=++|+ +....|..+.+.|.+.+.+.+
T Consensus 89 ---------------~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~ 121 (350)
T 1sji_A 89 ---------------EEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLI 121 (350)
T ss_dssp ---------------STTEEEEEETTE-EEEECSCCCHHHHHHHHHTTS
T ss_pred ---------------ccceEEEEECCc-EEEecCCCCHHHHHHHHHHhc
Confidence 345533337788 457789989888877776543
No 337
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.24 E-value=7.8e-05 Score=80.11 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=63.4
Q ss_pred CcceEEEccCCCEEEEEeC---------CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 266 FPGCISADESGNRLFLSDS---------NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
.| +|++++++..+||++. ..+.|.+||. +++.+..+-.+.+.. ..-..|.+|+++++++.|||
T Consensus 52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~------~~g~~p~~i~~spdg~~l~v 124 (361)
T 2oiz_A 52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV------QGLNYDGLFRQTTDGKFIVL 124 (361)
T ss_dssp EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC------CBCCCGGGEEECTTSSEEEE
T ss_pred CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc------ccCCCcceEEECCCCCEEEE
Confidence 57 9999998899999985 3567999998 567776553321100 01256999999999999999
Q ss_pred EeCC-CCeEEEEeCCCCEEEEE
Q 004302 336 VDSE-NHAIRRADMGRRVLETV 356 (762)
Q Consensus 336 ADt~-NhrIRkid~~~g~I~Ti 356 (762)
+... .+.|.+||..++.+..-
T Consensus 125 ~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 125 QNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEESSSEEEEEEETTTTEEEEE
T ss_pred ECCCCCCeEEEEECCCCcEEEE
Confidence 9976 68999999988865443
No 338
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.20 E-value=4.2e-07 Score=81.59 Aligned_cols=84 Identities=10% Similarity=-0.075 Sum_probs=50.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHH-HHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLV-EMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~-~f~~k~~itfPVl~D~~ 185 (762)
++++|++ ||++||++| ++++|.|+++..+ +.++-|..+. ....+. .+.+++++
T Consensus 18 ~~~~vv~-f~a~~C~~C-------~~~~~~l~~~~~~---~~~v~v~~~~------~~~~~~~~l~~~~~v--------- 71 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGYC-------NRVKQLLTQVGAS---YKVVELDELS------DGSQLQSALAHWTGR--------- 71 (116)
T ss_dssp TSSSEEE-EECTTCHHH-------HHHHHHHHHHTCC---CEEEEGGGST------THHHHHHHHHHHHSC---------
T ss_pred cCCCEEE-EECCCChhH-------HHHHHHHHHcCCC---eEEEEccCCC------ChHHHHHHHHHHhCC---------
Confidence 4567777 999999877 9999999998544 4555554332 223333 34445554
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCc---CHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSL---DIGMLNKAVEE 224 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~---~~~~L~~~l~~ 224 (762)
.++|++++ +|+.+....|.. +.++|.+.|++
T Consensus 72 ------~~~Pt~~~--~g~~v~~~~~~~~~~~~~~l~~~l~~ 105 (116)
T 2e7p_A 72 ------GTVPNVFI--GGKQIGGCDTVVEKHQRNELLPLLQD 105 (116)
T ss_dssp ------CSSCEEEE--TTEEEECHHHHHHHHHTTCHHHHHHH
T ss_pred ------CCcCEEEE--CCEEECChHHHHHHHhCChHHHHHHH
Confidence 13455544 477766554443 44455555554
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.18 E-value=9.4e-06 Score=87.71 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=85.1
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCc---EEEEEcCCCcEE---EEecCC-CC--CCCC------cccc-----cccCC
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHH---RIIVFDGNGKIL---DCIGSC-PG--FEDG------EFES-----SKLMR 320 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nh---rI~v~d~~G~i~---~~iGsG-~G--~~DG------~~~~-----a~fn~ 320 (762)
...++.|.|+++|+.+++||++|.+.+ +|.++...+.+- ...|.. .+ ..+. .+.. .....
T Consensus 193 a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~a 272 (353)
T 2g8s_A 193 SYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPA 272 (353)
T ss_dssp EECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCC
T ss_pred EEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcC
Confidence 346899999999987899999998854 565554433210 000000 00 0000 0010 11247
Q ss_pred cceEEEecC------CCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCC
Q 004302 321 PAASFYHKD------DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS 394 (762)
Q Consensus 321 P~GIavd~~------~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 394 (762)
|.|+++... .+.+||+|...++|.+++++++.+..... + + ...
T Consensus 273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~------------------~-~------------~~~ 321 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR------------------I-L------------TDR 321 (353)
T ss_dssp EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE------------------E-S------------GGG
T ss_pred cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE------------------c-c------------cCC
Confidence 999999631 47999999999999999987654321100 0 0 011
Q ss_pred CCCcceEEEcCCCcEEEE-ECCCCEEEEEEC
Q 004302 395 LIFPWHLMKSEDDNLLII-NRSFETLWIMDL 424 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVA-D~gN~rI~v~d~ 424 (762)
+..|++|++++||.|||+ |..+++|+++.+
T Consensus 322 ~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 322 GQRIRDVRTGPDGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp CCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred CCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence 447999999999999997 667899998864
No 340
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=98.12 E-value=7.1e-06 Score=80.14 Aligned_cols=128 Identities=9% Similarity=-0.031 Sum_probs=84.2
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCcc------
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTI------ 159 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~------ 159 (762)
+|.+..+++. ++.-....|+++|+.||..|||.| ....|.|.++.++|++ +.+.-+.+.-...
T Consensus 7 ~g~~y~~~~~---p~~g~~~~a~v~i~~f~d~~Cp~C-------~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~a~~ 76 (193)
T 2rem_A 7 VGEDYVEIPD---GRPFAPLAGKIEVVEIFGYTCPHC-------AHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFAR 76 (193)
T ss_dssp BTTTEEECTT---CCCSSCCTTCEEEEEEECTTCHHH-------HHHHHHHHHHHHTSCTTEEEEEEECCCSTTHHHHHH
T ss_pred CCCcceeccC---CCCCCCCCCCeEEEEEECCCChhH-------hhhhHHHHHHHHhcCCceEEEEeCcccCCCcHHHHH
Confidence 3555554443 222223368999999999999855 9999999999999987 7777666531000
Q ss_pred ------------------------------CcCCHHHHHHHHHhcCCCcceee------------CCCCccccc---cCc
Q 004302 160 ------------------------------SAVDQTRLVEMLMKEYITFPILL------------SNKNFPQME---NGA 194 (762)
Q Consensus 160 ------------------------------~e~~~~~v~~f~~k~~itfPVl~------------D~~~~~~~~---ygv 194 (762)
...+.+.+.+++++.|++.+-+. +........ .|+
T Consensus 77 a~~~a~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gt 156 (193)
T 2rem_A 77 AYLAADVLGVAKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGT 156 (193)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCC
Confidence 11356677888888888765221 111111223 367
Q ss_pred eEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 195 CYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 195 ~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
|+|+|+ |+.+ ..|. +.+++.+.|+.++.+.
T Consensus 157 Pt~vin--g~~~--~~g~-~~~~l~~~i~~~~~~~ 186 (193)
T 2rem_A 157 PTIVVN--GRYM--VTGH-DFEDTLRITDYLVSRE 186 (193)
T ss_dssp SEEEET--TTEE--ECCS-SHHHHHHHHHHHHHHH
T ss_pred CeEEEC--CEEE--ecCC-CHHHHHHHHHHHHHHH
Confidence 899996 5543 3566 8899999999998764
No 341
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.11 E-value=4.1e-05 Score=83.76 Aligned_cols=81 Identities=19% Similarity=0.091 Sum_probs=63.4
Q ss_pred CcceEEEccCCCEEEEEeC---------CCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeE
Q 004302 266 FPGCISADESGNRLFLSDS---------NHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCL 333 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~L 333 (762)
.| ++++++.+..+||+++ ..+.|.+||. +++++..+-.+ ..+ .....|.+++++|+++.|
T Consensus 67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~-------~~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-------SVGPRVHIIGNCASSACL 138 (368)
T ss_dssp TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC-------CBSCCTTSEEECTTSSCE
T ss_pred CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc-------ccCCCcceEEEcCCCCEE
Confidence 58 9999999999999994 4789999998 78888776322 111 112579999999999999
Q ss_pred EEEeCC-CCeEEE--EeCCCCEEEEE
Q 004302 334 YIVDSE-NHAIRR--ADMGRRVLETV 356 (762)
Q Consensus 334 YVADt~-NhrIRk--id~~~g~I~Ti 356 (762)
||++.. .+.|.+ ||..+ +.++
T Consensus 139 yVan~~~~~~v~V~~iD~~t--v~~i 162 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD--DQLT 162 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE--EEEE
T ss_pred EEEccCCCCeEEEEEEchhh--ceEE
Confidence 999975 678988 99866 5555
No 342
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.11 E-value=4.2e-05 Score=82.22 Aligned_cols=111 Identities=21% Similarity=0.314 Sum_probs=81.5
Q ss_pred CCEEEEEeCC-----CcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC---------CC
Q 004302 276 GNRLFLSDSN-----HHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---------EN 340 (762)
Q Consensus 276 ~g~LYVADs~-----nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---------~N 340 (762)
..++||+|.+ .+.|.++|. +|+++..+..| ..| +++++++++.|||++. ..
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g-------------~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~ 80 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA-------------FNG-HVQVSNDGKKIYTMTTYHERITRGKRS 80 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC-------------EEE-EEEECTTSSEEEEEEEEETTSSSSCEE
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC-------------CCC-ceEECCCCCEEEEEEecccccccCCCC
Confidence 5789999965 458999996 78877666432 238 9999999999999985 24
Q ss_pred CeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC-CC
Q 004302 341 HAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS-FE 417 (762)
Q Consensus 341 hrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g-N~ 417 (762)
+.|.+||..++ .+.++. .+. . . ...-..|.+|+++++| .|||++.+ .+
T Consensus 81 ~~v~v~d~~t~~~~~~i~-~~~-~---------------~------------~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEIS-LPP-K---------------R------------VQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEEEEETTTCCEEEEEE-ECT-T---------------B------------CCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred CEEEEEECcCCcEEEEEE-cCc-c---------------c------------cccCCCcceEEECCCCCEEEEECCCCCC
Confidence 57999998765 444442 110 0 0 0012479999999986 69999986 78
Q ss_pred EEEEEECCCCcE
Q 004302 418 TLWIMDLASGEI 429 (762)
Q Consensus 418 rI~v~d~~~g~I 429 (762)
.|.+||.+++++
T Consensus 132 ~v~v~d~~~~~~ 143 (361)
T 2oiz_A 132 SIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999998764
No 343
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=98.08 E-value=1.1e-05 Score=74.84 Aligned_cols=92 Identities=7% Similarity=-0.028 Sum_probs=65.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++|++.|||+ |+|| +...|.|+++.++|++ +.|+-|+.++ .. ..++++++.
T Consensus 22 ~~~pv~v~f~a~-~~~c-------~~~~p~l~~~A~~~~gk~~f~~vd~d~------~~----~~a~~~gi~-------- 75 (133)
T 2djk_A 22 AGIPLAYIFAET-AEER-------KELSDKLKPIAEAQRGVINFGTIDAKA------FG----AHAGNLNLK-------- 75 (133)
T ss_dssp TTSCEEEEECSC-SSSH-------HHHHHHHHHHHHSSTTTSEEEEECTTT------TG----GGTTTTTCC--------
T ss_pred CCCCEEEEEecC-hhhH-------HHHHHHHHHHHHHhCCeEEEEEEchHH------hH----HHHHHcCCC--------
Confidence 367999999999 7766 9999999999999987 9999998765 11 112222221
Q ss_pred CccccccCceEEEEcC--CCCEEEEec--CCcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACYLLSKD--FGNARVFHE--NSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~--~G~iv~~~~--G~~~~~~L~~~l~~ll~~~~ 230 (762)
.-.+|++++-+ .|+. .... |..+.+.|++.|++++....
T Consensus 76 -----~~~iPtl~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~Gkl 118 (133)
T 2djk_A 76 -----TDKFPAFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVAGKI 118 (133)
T ss_dssp -----SSSSSEEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred -----cccCCEEEEEecCcCcc-cCCCCccccCHHHHHHHHHHHHcCCc
Confidence 11267654444 3776 4554 99999999999999997543
No 344
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.04 E-value=2.7e-05 Score=90.09 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=88.4
Q ss_pred CcceEEEccCCCEEEEEeCCC--------------cEEEEEcC--------CCcEEEEecC-C-CCCCC--Ccc---ccc
Q 004302 266 FPGCISADESGNRLFLSDSNH--------------HRIIVFDG--------NGKILDCIGS-C-PGFED--GEF---ESS 316 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~n--------------hrI~v~d~--------~G~i~~~iGs-G-~G~~D--G~~---~~a 316 (762)
.|.++++++.++.+|++..+. ..|.++|. +|+.... +. . -.... +.. .-.
T Consensus 196 ~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-~~V~VID~~~~~~~~~~~~Ip 274 (595)
T 1fwx_A 196 NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-NGVKVVDGRKEASSLFTRYIP 274 (595)
T ss_dssp CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE-TTEEEEECSGGGCCSSEEEEE
T ss_pred CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE-CcEEEEeCcccCCceeEEEEe
Confidence 689999999999999999887 55777754 3443222 21 0 00000 100 011
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhh--ccCccccCCCccCCCCCCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIME--KLGFERDNDTKSEKLDPQS 394 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~--~~G~~~~~~~~~~~~~~~~ 394 (762)
.=.+|+|+.++|++..+||++...++|-+||..+.... +.|.= . ..+.++. ..|
T Consensus 275 vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~l--~-----~~~~v~~~v~vG---------------- 330 (595)
T 1fwx_A 275 IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYENA--D-----PRSAVVAEPELG---------------- 330 (595)
T ss_dssp EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSCC--C-----GGGGEEECCBCC----------------
T ss_pred cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-ccccc--C-----cccceEEEcCCC----------------
Confidence 12589999999999999999999999999998643100 01000 0 0000000 011
Q ss_pred CCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 395 LIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
..|++++++++|++|++..-.+.|.+||.+.
T Consensus 331 -~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 -LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 2699999999999999999999999999865
No 345
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.04 E-value=7.2e-05 Score=82.50 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=63.7
Q ss_pred CcceEEEccCCCEEEEEeC---------CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 266 FPGCISADESGNRLFLSDS---------NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
.|. |+++|++..+||+++ ..+.|.+||. +++++..+-.+.|-. ...-..|.++++++++..|||
T Consensus 80 ~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r-----~~~g~~P~~~a~spDGk~lyV 153 (386)
T 3sjl_D 80 LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-----FLVGTYPWMTSLTPDGKTLLF 153 (386)
T ss_dssp SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-----CCBSCCGGGEEECTTSSEEEE
T ss_pred CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc-----cccCCCCceEEEcCCCCEEEE
Confidence 475 999999999999985 3567999998 677776653321100 001247999999999999999
Q ss_pred EeCC-CCeEEEEeCCCCEEEEE
Q 004302 336 VDSE-NHAIRRADMGRRVLETV 356 (762)
Q Consensus 336 ADt~-NhrIRkid~~~g~I~Ti 356 (762)
+... .+.|.+||..++.+..-
T Consensus 154 an~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 154 YQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp EECSSSCEEEEEETTTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCcEEEE
Confidence 9974 78999999998865433
No 346
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=98.00 E-value=5.9e-06 Score=72.23 Aligned_cols=75 Identities=9% Similarity=-0.061 Sum_probs=52.2
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQME 191 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ 191 (762)
|+.|||+||+|| ....|.|+++..+| +.-|++++ +.+ ..+++++.
T Consensus 3 vv~f~a~~C~~C-------~~~~~~L~~~~~~~----~~~vdid~------~~~----l~~~~g~~-------------- 47 (87)
T 1ttz_A 3 LTLYQRDDCHLC-------DQAVEALAQARAGA----FFSVFIDD------DAA----LESAYGLR-------------- 47 (87)
T ss_dssp EEEEECSSCHHH-------HHHHHHHHHTTCCC----EEEEECTT------CHH----HHHHHTTT--------------
T ss_pred EEEEECCCCchH-------HHHHHHHHHHHHhh----eEEEECCC------CHH----HHHHhCCC--------------
Confidence 678999999977 99999999886553 34566665 333 33344433
Q ss_pred cCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 192 NGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 192 ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+|++++ .+|+.+. |..+.+.|+++|++++.
T Consensus 48 --vPtl~~-~~G~~v~---g~~~~~~L~~~l~~~~~ 77 (87)
T 1ttz_A 48 --VPVLRD-PMGRELD---WPFDAPRLRAWLDAAPH 77 (87)
T ss_dssp --CSEEEC-TTCCEEE---SCCCHHHHHHHHHTCC-
T ss_pred --cCeEEE-ECCEEEe---CCCCHHHHHHHHHHHHH
Confidence 566666 6788875 88888888888875443
No 347
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.99 E-value=2.4e-05 Score=78.02 Aligned_cols=95 Identities=9% Similarity=-0.157 Sum_probs=68.3
Q ss_pred CCCCCEEEEEEecc-CCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 105 KRGGAFLVLAGRFV-DNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 105 d~rGK~VvLnFWAt-WC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+.+++++|+.|||+ ||++| .+..|.++++.+.++.+.|+-|+.+. ....+..+++++.
T Consensus 19 ~~~~~v~lv~f~~~~~C~~C-------~~~~~~~~~la~~~~~v~~~~vd~~~--------~~~~~~~~~~~v~------ 77 (226)
T 1a8l_A 19 KMVNPVKLIVFVRKDHCQYC-------DQLKQLVQELSELTDKLSYEIVDFDT--------PEGKELAKRYRID------ 77 (226)
T ss_dssp GCCSCEEEEEEECSSSCTTH-------HHHHHHHHHHHTTCTTEEEEEEETTS--------HHHHHHHHHTTCC------
T ss_pred hcCCCeEEEEEecCCCCchh-------HHHHHHHHHHHhhCCceEEEEEeCCC--------cccHHHHHHcCCC------
Confidence 35678899999999 99866 99999999999776669998887653 1124555666653
Q ss_pred CCCccccccCceEEEEcCCCCEE-EEecCCcCHHHHHHHHHHHHHhh
Q 004302 184 NKNFPQMENGACYLLSKDFGNAR-VFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv-~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++|++++-++|+.. .+..|....+++.+.+..++...
T Consensus 78 ---------~~Pt~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~ 115 (226)
T 1a8l_A 78 ---------RAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVS 115 (226)
T ss_dssp ---------SSSEEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHHH
T ss_pred ---------cCceEEEEcCCceeeEEEeccCcHHHHHHHHHHHHhhc
Confidence 35665554666554 56667777778888888877643
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.84 E-value=0.00023 Score=75.68 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=98.8
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-CeEEEEeCCCC
Q 004302 273 DESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN-HAIRRADMGRR 351 (762)
Q Consensus 273 D~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N-hrIRkid~~~g 351 (762)
++.++.||.+|.+.++|.+++.+|.-...+-.+ +..++++|+++.||.+|..+ .+|.+++++++
T Consensus 153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp EEETTEEEEECTTTCCEEEEETTTTEEEEEECS---------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred eEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---------------CccceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 445889999988999999999988655544221 22234557799999999764 58999998766
Q ss_pred EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE-ECCCCEEEEEECCCCcEE
Q 004302 352 VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII-NRSFETLWIMDLASGEIK 430 (762)
Q Consensus 352 ~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA-D~gN~rI~v~d~~~g~I~ 430 (762)
....+.- ..+ |+ +..+ .+.||.+ |...+.|.++++++....
T Consensus 218 ~~~~Lt~----------------------------------~~~--~~-~~~~-g~~Iy~~~~~~~~~i~~~~~DG~~r~ 259 (302)
T 3s25_A 218 NPVVLTE----------------------------------ANI--EH-YNVY-GSLIFYQRGGDNPALCVVKNDGTGFK 259 (302)
T ss_dssp CCEECSC----------------------------------SCE--EE-EEEE-TTEEEEEECSSSCEEEEEETTSCCCE
T ss_pred CeEEEeC----------------------------------CCc--ce-EEEC-CCEEEEEECCCCcEEEEEECCCCccE
Confidence 5444420 001 44 4443 4678876 777789999999876655
Q ss_pred EEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCc
Q 004302 431 EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGV 510 (762)
Q Consensus 431 ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~ 510 (762)
++..+. +.+++..++.||.+|...+.|.++.++|..
T Consensus 260 ~l~~~~--------------------------------------------~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~ 295 (302)
T 3s25_A 260 ELAKGE--------------------------------------------FCNINVTSQYVYFTDFVSNKEYCTSTQNPD 295 (302)
T ss_dssp EEEESC--------------------------------------------EEEEEECSSEEEEEETTTCCEEEEESSSCC
T ss_pred EeeCCc--------------------------------------------cceEEEeCCEEEEEECCCCeEEEEECCCCC
Confidence 553211 124566889999999998899999887654
No 349
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.81 E-value=0.00022 Score=82.46 Aligned_cols=171 Identities=10% Similarity=0.022 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-CcEEEEe--cCCCCCCCCcccccccCCcceEEE-e-cCCCeEEEEe------------
Q 004302 275 SGNRLFLSDSNHHRIIVFDGN-GKILDCI--GSCPGFEDGEFESSKLMRPAASFY-H-KDDDCLYIVD------------ 337 (762)
Q Consensus 275 s~g~LYVADs~nhrI~v~d~~-G~i~~~i--GsG~G~~DG~~~~a~fn~P~GIav-d-~~~g~LYVAD------------ 337 (762)
++..+||.|..|+||.+||.+ .++..++ .++ ..|+|+++ . |+++.+|++.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-------------CCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 468999999999999999994 5766644 322 24999998 4 7899999994
Q ss_pred -----CCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEE
Q 004302 338 -----SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLI 411 (762)
Q Consensus 338 -----t~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYV 411 (762)
...+.|-+||.++..+..-...|+ .|.+++++++ +.+|+
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-----------------------------------~pd~~~~spdGk~~~v 211 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG-----------------------------------NLDNCDADYEGKWAFS 211 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS-----------------------------------CCCCEEECSSSSEEEE
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC-----------------------------------CccceEECCCCCEEEE
Confidence 445688899988776654443320 4889999987 56888
Q ss_pred EECCCCE--------------EEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCC--
Q 004302 412 INRSFET--------------LWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL-- 475 (762)
Q Consensus 412 AD~gN~r--------------I~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~-- 475 (762)
+....+. |.++|....+. . ...|+...+ ..+.++|..... ... .....
T Consensus 212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~-~--v~~Gk~~~i------~~V~VID~~~~~------~~~-~~~~Ipv 275 (595)
T 1fwx_A 212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK-A--IAAGDYQEL------NGVKVVDGRKEA------SSL-FTRYIPI 275 (595)
T ss_dssp EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-H--HHHTCSEEE------TTEEEEECSGGG------CCS-SEEEEEE
T ss_pred EecCcccCcchhhccccccceEEEeeccceeE-e--ccCCCeeEE------CcEEEEeCcccC------Cce-eEEEEec
Confidence 8877633 55555432210 0 011111111 113333321100 000 00011
Q ss_pred CCcceeeeEEecCCEEEEEECCCCEEEEEECCCC
Q 004302 476 PYAGLISSSIAFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 476 p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
+..+.+..+++++..+||++-...+|-.||..+.
T Consensus 276 g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 276 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 1234668888888899999999999999999865
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.80 E-value=0.00035 Score=74.20 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=102.4
Q ss_pred EEccCCCEEEEEe---CCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 271 SADESGNRLFLSD---SNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 271 AVD~s~g~LYVAD---s~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
++++.++.||.+| .++..|.+++.+|.-...+-.+. + +++++.++.||.+|.+...|.+++
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~---------~-------~~~~~~g~~iy~t~~g~~~Iy~~~ 173 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY---------L-------FTCNTSDRYFYYNNPKNGQLYRYD 173 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC---------C-------CCSEEETTEEEEECTTTCCEEEEE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC---------c-------eEeeEECCEEEEEeCCCceEEEEE
Confidence 4444589999999 78999999999885443332210 0 223556899999999889999999
Q ss_pred CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCC-CEEEEEECC
Q 004302 348 MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSF-ETLWIMDLA 425 (762)
Q Consensus 348 ~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN-~rI~v~d~~ 425 (762)
++++..+++. .+ +..+++.| .+.||.+|..+ .+|.+++++
T Consensus 174 l~g~~~~~l~-~~-------------------------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 174 TASQSEALFY-DC-------------------------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp TTTTEEEEEE-CS-------------------------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred CCCCCEEEEe-CC-------------------------------------CccceeeecCCEEEEEEcCCCcEEEEEECC
Confidence 9888777663 11 11122344 58999999764 589999998
Q ss_pred CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE-ECCCCEEEEE
Q 004302 426 SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC-DIVGQRIMRL 504 (762)
Q Consensus 426 ~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA-Dt~NhRIrki 504 (762)
++..+.+ . +. .. ..+++.++.||.+ |...+.|.++
T Consensus 216 G~~~~~L-t-~~------------------------------------~~------~~~~~~g~~Iy~~~~~~~~~i~~~ 251 (302)
T 3s25_A 216 NPNPVVL-T-EA------------------------------------NI------EHYNVYGSLIFYQRGGDNPALCVV 251 (302)
T ss_dssp SCCCEEC-S-CS------------------------------------CE------EEEEEETTEEEEEECSSSCEEEEE
T ss_pred CCCeEEE-e-CC------------------------------------Cc------ceEEECCCEEEEEECCCCcEEEEE
Confidence 7764433 1 00 00 1256678899986 6777899999
Q ss_pred ECCCCcEEEEee
Q 004302 505 NRESGVCSNFQF 516 (762)
Q Consensus 505 dl~~~~~sti~~ 516 (762)
+++|.....+..
T Consensus 252 ~~DG~~r~~l~~ 263 (302)
T 3s25_A 252 KNDGTGFKELAK 263 (302)
T ss_dssp ETTSCCCEEEEE
T ss_pred ECCCCccEEeeC
Confidence 999987666643
No 351
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.76 E-value=3.7e-05 Score=69.98 Aligned_cols=77 Identities=5% Similarity=-0.120 Sum_probs=54.5
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccc
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQ 189 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~ 189 (762)
.+|+.||++||+|| ....|.|+++.++++ +.+.-|++++ +.+ ..+++++.
T Consensus 30 ~~vv~y~~~~C~~C-------~~a~~~L~~l~~e~~-i~~~~vDId~------d~~----l~~~ygv~------------ 79 (107)
T 2fgx_A 30 RKLVVYGREGCHLC-------EEMIASLRVLQKKSW-FELEVINIDG------NEH----LTRLYNDR------------ 79 (107)
T ss_dssp CCEEEEECSSCHHH-------HHHHHHHHHHHHHSC-CCCEEEETTT------CHH----HHHHSTTS------------
T ss_pred cEEEEEeCCCChhH-------HHHHHHHHHHHHhcC-CeEEEEECCC------CHH----HHHHhCCC------------
Confidence 56899999999977 999999999999886 6666777765 333 23344443
Q ss_pred cccCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 190 MENGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 190 ~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
+|++++=.+|+.+ ..|..+.++|+++|
T Consensus 80 ----VP~l~~~~dG~~v--~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 80 ----VPVLFAVNEDKEL--CHYFLDSDVIGAYL 106 (107)
T ss_dssp ----CSEEEETTTTEEE--ECSSCCCHHHHHHH
T ss_pred ----CceEEEEECCEEE--EecCCCHHHHHHHh
Confidence 4554444467766 34778878887765
No 352
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.76 E-value=0.00019 Score=78.12 Aligned_cols=80 Identities=16% Similarity=0.035 Sum_probs=60.5
Q ss_pred cCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCC
Q 004302 318 LMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 397 (762)
Q Consensus 318 fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~ 397 (762)
|..|.+|++.+ ++.|||++...++|++++..++....+.+..... ......
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~----------------------------~~g~~G 81 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS----------------------------PSGEGG 81 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----------------------------CBTTBS
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCcee----------------------------ecCCCC
Confidence 78899999998 6889999998899999987777666664432100 011446
Q ss_pred cceEEEcC----CCcEEEEEC--CCCEEEEEECCC
Q 004302 398 PWHLMKSE----DDNLLIINR--SFETLWIMDLAS 426 (762)
Q Consensus 398 P~gIavd~----dG~LYVAD~--gN~rI~v~d~~~ 426 (762)
|.||++++ +|.|||+.+ ..++|.++..+.
T Consensus 82 llGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 82 LLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred ceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 99999997 499999764 567899988765
No 353
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=97.75 E-value=4.8e-05 Score=82.73 Aligned_cols=88 Identities=9% Similarity=-0.109 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhc------HHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCc
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTF------EKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITF 178 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~em------P~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itf 178 (762)
.+++|||+|||+||++| .... |.++++.+.+.+ +.|..|+++. .. +..++++|.
T Consensus 29 ~~~~vlV~FyApWC~~~-------~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~------~~----~l~~~~~V~- 90 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDK-------ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK------DA----AVAKKLGLT- 90 (367)
T ss_dssp HCSEEEEEEECCCCSSH-------HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT------TH----HHHHHHTCC-
T ss_pred hCCeEEEEEECCCchhH-------HHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc------cH----HHHHHcCCC-
Confidence 47899999999999855 3222 678888888764 8999998875 22 344555543
Q ss_pred ceeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 179 PILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+.||+++=++|+++ ...|..+.+.|.+.|.+.+.
T Consensus 91 --------------~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 91 --------------EEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp --------------STTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred --------------cCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence 34554333468775 67898998888888877653
No 354
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.00044 Score=75.34 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=81.6
Q ss_pred ccCCcceEEE--ccCCC--EEEEEeCCCcEEEEEcC----CC----cEEEEecCCCCCCCCcccccccCCcceEEEecCC
Q 004302 263 LLHFPGCISA--DESGN--RLFLSDSNHHRIIVFDG----NG----KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDD 330 (762)
Q Consensus 263 ~L~~P~gIAV--D~s~g--~LYVADs~nhrI~v~d~----~G----~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~ 330 (762)
.+..|.|+|+ ++..+ .+||.+.. +++..+.. +| +.++.++-+ ..|.|+++|+..
T Consensus 126 ~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lg-------------sq~EgcvvDd~~ 191 (355)
T 3amr_A 126 AINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMN-------------SQTEGMAADDEY 191 (355)
T ss_dssp CCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECS-------------SCEEEEEEETTT
T ss_pred CCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCC-------------CCcceEEEcCCC
Confidence 3689999999 76566 47788875 67776433 34 334444432 259999999889
Q ss_pred CeEEEEeCCCCeEEEEeCC--C---CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC-CcceEEEc
Q 004302 331 DCLYIVDSENHAIRRADMG--R---RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI-FPWHLMKS 404 (762)
Q Consensus 331 g~LYVADt~NhrIRkid~~--~---g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~-~P~gIavd 404 (762)
+.|||++... -|.+|+.+ + +.+...++.+ .|. .|.||++.
T Consensus 192 g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g---------------------------------~l~aDvEGLai~ 237 (355)
T 3amr_A 192 GRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGR---------------------------------HLTRDIEGLTIY 237 (355)
T ss_dssp TEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSS---------------------------------SBCSCEEEEEEE
T ss_pred CeEEEecccc-eEEEEeCCcCCCCCceEEEEecCC---------------------------------ccccCcceEEEE
Confidence 9999999875 59999954 2 3333332211 122 69999996
Q ss_pred C--C--CcEEEEECCCCEEEEEECC
Q 004302 405 E--D--DNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 405 ~--d--G~LYVAD~gN~rI~v~d~~ 425 (762)
. + |+|++++.+|++..+||.+
T Consensus 238 ~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 238 YAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecCCCCEEEEEEcCCCCEEEEEECC
Confidence 3 2 6799999999999999986
No 355
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.72 E-value=0.00021 Score=80.11 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=60.7
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
.|..|.+|++++ +++|||++...++|++++..++...+++..... .. ......
T Consensus 25 ~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~----------------~~----------~~~g~~ 77 (454)
T 1cru_A 25 NLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEI----------------VN----------DADGQN 77 (454)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTC----------------CC----------CTTSSC
T ss_pred CCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc----------------cc----------ccCCCC
Confidence 377899999998 688999999888999998766777766543210 00 000123
Q ss_pred CcceEEEcC----CCcEEEEECC------------CCEEEEEECCC
Q 004302 397 FPWHLMKSE----DDNLLIINRS------------FETLWIMDLAS 426 (762)
Q Consensus 397 ~P~gIavd~----dG~LYVAD~g------------N~rI~v~d~~~ 426 (762)
.+.||++++ ++.|||+++. .++|.+++.+.
T Consensus 78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~ 123 (454)
T 1cru_A 78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNK 123 (454)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEET
T ss_pred ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECC
Confidence 578999998 7999999975 46898887643
No 356
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=97.70 E-value=3.4e-05 Score=76.43 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=46.1
Q ss_pred CCCCEEEEEEec-------cCCCCccCCCCcchhhcHHHHHHHHHCC-----C-eEEEEEEcCCCccCcCCHHHHHHHHH
Q 004302 106 RGGAFLVLAGRF-------VDNCDSLIAGCGTVVTFEKVKSIQQSFP-----Q-LQVIGFLHGCSTISAVDQTRLVEMLM 172 (762)
Q Consensus 106 ~rGK~VvLnFWA-------tWC~pC~~p~C~~~~emP~L~~L~~~y~-----~-v~VvgV~~~~~~~~e~~~~~v~~f~~ 172 (762)
-++.+|||.||| .||+|| +...|.++++.++|. + +.|.-|++++ . .+..+
T Consensus 35 ~~~~~vvV~F~A~~~~~~~~wCgpC-------k~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~------~----~~la~ 97 (178)
T 3ga4_A 35 VPGYFNILYITMRGTNSNGMSCQLC-------HDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE------V----PQLVK 97 (178)
T ss_dssp CTTCEEEEEEECCSBCTTSCBCHHH-------HHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT------C----HHHHH
T ss_pred cCCCcEEEEEeCCCCCCCCCCChhH-------HHHHHHHHHHHHHhhhccCCCCEEEEEEECcc------C----HHHHH
Confidence 367899999999 499977 999999999999986 5 8888888775 2 34556
Q ss_pred hcCCC-ccee
Q 004302 173 KEYIT-FPIL 181 (762)
Q Consensus 173 k~~it-fPVl 181 (762)
+++|. +|.+
T Consensus 98 ~~~I~siPtl 107 (178)
T 3ga4_A 98 DLKLQNVPHL 107 (178)
T ss_dssp HTTCCSSCEE
T ss_pred HcCCCCCCEE
Confidence 67763 4633
No 357
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.67 E-value=0.00094 Score=75.02 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=115.5
Q ss_pred cccCCcceEEEccCCCEEEEEeCCC------cEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEE
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNH------HRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~n------hrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LY 334 (762)
..+..|+++++.| +| |||+..++ +.|.++|. +++++..+-.+.+ . -..+..+.++++.+.+|
T Consensus 135 ~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~-------~--~~~~Yd~~~~p~~~~mv 203 (462)
T 2ece_A 135 SGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG-------D--QYLAYDFWWNLPNEVLV 203 (462)
T ss_dssp HCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT-------T--CCCCCCEEEETTTTEEE
T ss_pred cCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC-------C--ccccceEEECCCCCEEE
Confidence 3466899999997 45 99998888 89999997 5888877743211 0 01244577788788899
Q ss_pred EEeCC------------------CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 335 IVDSE------------------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 335 VADt~------------------NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
+++++ .++|.++|..++.+..-...|. . | .
T Consensus 204 sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~---~------------g-----------------~ 251 (462)
T 2ece_A 204 SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE---E------------N-----------------R 251 (462)
T ss_dssp ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT---T------------E-----------------E
T ss_pred EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC---C------------C-----------------C
Confidence 99854 7999999998775433222220 0 0 1
Q ss_pred CcceEEE--cCCC-cEEEEEC-----CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCC
Q 004302 397 FPWHLMK--SEDD-NLLIINR-----SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDS 468 (762)
Q Consensus 397 ~P~gIav--d~dG-~LYVAD~-----gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~ 468 (762)
.|.+|.+ +++| .+||+.. -++.|++|..+.|...... .+.+.-.-... .+..+|..
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~-----vIdi~~~~v~~---~lp~~~~~-------- 315 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK-----VIEIPAEPLEG---NLPEILKP-------- 315 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE-----EEEECCEECCS---SCCGGGGG--------
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE-----EEeCCCccccc---cccccccc--------
Confidence 3888877 7774 6999998 8889988877665433221 00000000000 00000000
Q ss_pred cccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECC
Q 004302 469 SCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE 507 (762)
Q Consensus 469 ~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~ 507 (762)
+.+.+..+..+.++.++..|||++.+.+.|..|+.+
T Consensus 316 ---f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 316 ---FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ---GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ---cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000011123456677888999999999999999975
No 358
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.66 E-value=0.0021 Score=72.22 Aligned_cols=133 Identities=11% Similarity=-0.083 Sum_probs=84.4
Q ss_pred CcceEEEccCCCEEEEEeC------------------CCcEEEEEcC-CCcEEEEecCC-CCCCCCcccccccCCcceEE
Q 004302 266 FPGCISADESGNRLFLSDS------------------NHHRIIVFDG-NGKILDCIGSC-PGFEDGEFESSKLMRPAASF 325 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs------------------~nhrI~v~d~-~G~i~~~iGsG-~G~~DG~~~~a~fn~P~GIa 325 (762)
.+..+.++|..+.+|+++. ..++|.++|. +++++..+-.| .| ..|.+|.
T Consensus 189 ~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g-----------~~P~~i~ 257 (462)
T 2ece_A 189 LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN-----------RMALELR 257 (462)
T ss_dssp CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE-----------EEEEEEE
T ss_pred ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC-----------CccceeE
Confidence 3446667777788888884 3899999998 56666655443 21 2488887
Q ss_pred E--ecCCCeEEEEeC-----CCCeEEEEeCCCCEEEEEee--cCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 326 Y--HKDDDCLYIVDS-----ENHAIRRADMGRRVLETVYP--TSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 326 v--d~~~g~LYVADt-----~NhrIRkid~~~g~I~TiaG--~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
+ +|++..+||+.. ..+.|.++..+.+......- .......+. +... ...+. +.-.
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~---------lp~~------~~~f~-~~~~ 321 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN---------LPEI------LKPFK-AVPP 321 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS---------CCGG------GGGGT-EECC
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc---------cccc------ccccc-cCCC
Confidence 7 888899999988 88888877655554322210 000000000 0000 00000 0024
Q ss_pred CcceEEEcCCC-cEEEEECCCCEEEEEECC
Q 004302 397 FPWHLMKSEDD-NLLIINRSFETLWIMDLA 425 (762)
Q Consensus 397 ~P~gIavd~dG-~LYVAD~gN~rI~v~d~~ 425 (762)
.|.+|.+++|| .|||++.+.+.|.+||.+
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 69999999985 699999999999999975
No 359
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=97.66 E-value=3e-05 Score=78.02 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=61.8
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCC-------------HHHHHHHHH
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVD-------------QTRLVEMLM 172 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~-------------~~~v~~f~~ 172 (762)
-.||++|+.||++|||+| ++..|.|+++.+. +++|.-+..+-....... ...+..++.
T Consensus 84 ~~~k~~vv~F~d~~Cp~C-------~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~ 154 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYC-------HLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK 154 (211)
T ss_dssp TTCSEEEEEEECTTCHHH-------HHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCHhH-------HHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHc
Confidence 368999999999999866 9999999997653 577666555420000000 111222222
Q ss_pred hcCCCc---ceeeCCCCcccccc---CceEEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 173 KEYITF---PILLSNKNFPQMEN---GACYLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 173 k~~itf---PVl~D~~~~~~~~y---gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
..++++ ...++........+ |+|++++ .+|+ ...|..+.++|++.|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~ 208 (211)
T 1t3b_A 155 GNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE 208 (211)
T ss_dssp TCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHh
Confidence 222221 11111112223344 5678888 5676 46788898888888764
No 360
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.66 E-value=0.0023 Score=69.73 Aligned_cols=165 Identities=8% Similarity=0.094 Sum_probs=96.3
Q ss_pred EEEEEeCC--CcEEEEE--cCCCcEEEEecCC-CCCCCCcccccccCCcceEEE--ecCCC--eEEEEeCCCCeEEEEeC
Q 004302 278 RLFLSDSN--HHRIIVF--DGNGKILDCIGSC-PGFEDGEFESSKLMRPAASFY--HKDDD--CLYIVDSENHAIRRADM 348 (762)
Q Consensus 278 ~LYVADs~--nhrI~v~--d~~G~i~~~iGsG-~G~~DG~~~~a~fn~P~GIav--d~~~g--~LYVADt~NhrIRkid~ 348 (762)
.+|++|.. +|+|.+| |++...+..+|.. .. ....+..|.|+|+ ++..+ .+||.+.. +++..+.+
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~p------v~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l 160 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHP------IATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYEL 160 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSC------EECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEE
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccC------cCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEE
Confidence 46899998 9999988 5443335555431 00 0123578999999 76555 58888875 77777654
Q ss_pred ---CCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEEEEEE
Q 004302 349 ---GRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETLWIMD 423 (762)
Q Consensus 349 ---~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI~v~d 423 (762)
..+.+ .++..+ +.++ ..|.|+++|++ |.|||++...+ ||+|+
T Consensus 161 ~~~~~g~~~~~lVR~-----------------f~lg---------------sq~EgcvvDd~~g~Lyv~eEd~G-Iw~~d 207 (355)
T 3amr_A 161 KADKNGYISGKKVRA-----------------FKMN---------------SQTEGMAADDEYGRLYIAEEDEA-IWKFS 207 (355)
T ss_dssp EECTTSCEEEEEEEE-----------------EECS---------------SCEEEEEEETTTTEEEEEETTTE-EEEEE
T ss_pred EeCCCCcccceEEEE-----------------ecCC---------------CCcceEEEcCCCCeEEEecccce-EEEEe
Confidence 22211 111111 1110 15899999964 99999999855 99999
Q ss_pred CC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEec---CCEEEEEECCC
Q 004302 424 LA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAF---QNHILLCDIVG 498 (762)
Q Consensus 424 ~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~---~g~LYVADt~N 498 (762)
.+ ++.-.+++ ...+. +.+.. ...|.++... .+.|+|++.+|
T Consensus 208 a~p~~~~~~~~v-------~~~~~------------------------g~l~a---DvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 208 AEPDGGSNGTVI-------DRADG------------------------RHLTR---DIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp CSTTSCSCCEEE-------EEBSS------------------------SSBCS---CEEEEEEEECGGGCEEEEEEEGGG
T ss_pred CCcCCCCCceEE-------EEecC------------------------Ccccc---CcceEEEEecCCCCEEEEEEcCCC
Confidence 54 31111111 11000 00000 1134555322 24799999999
Q ss_pred CEEEEEECCC--CcEEEEee
Q 004302 499 QRIMRLNRES--GVCSNFQF 516 (762)
Q Consensus 499 hRIrkidl~~--~~~sti~~ 516 (762)
+....++... ..+.+|.+
T Consensus 254 ~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp TEEEEEESSTTCCEEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEEe
Confidence 9999999963 34445543
No 361
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.62 E-value=0.0085 Score=66.41 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=78.4
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+|++++. ++.+++=..++.|+++|.+++.+..+-.- -....+++++|++..|. +-+.++.|+.+
T Consensus 388 v~~~~~s~d-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~------------~~~v~~~~~s~d~~~l~-~~~~d~~v~~w 453 (577)
T 2ymu_A 388 VRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDDQTIA-SASDDKTVKLW 453 (577)
T ss_dssp EEEEEECTT-SSCEEEEETTSEEEEECTTCCEEEEEECC------------SSCEEEEEECTTSSEEE-EEETTSEEEEE
T ss_pred eEEEEECCC-CCEEEEEeCCCEEEEEeCCCCEEEEecCC------------CCCeEEEEECCCCCEEE-EEcCCCEEEEE
Confidence 456777764 43444444567788888877766544211 11246789998555554 44567889999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
|.++..+.++.+.. ...+.++++++|.++++-..++.|++||.++
T Consensus 454 ~~~~~~~~~~~~~~-----------------------------------~~v~~~~~spd~~~las~~~d~~i~iw~~~~ 498 (577)
T 2ymu_A 454 NRNGQLLQTLTGHS-----------------------------------SSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498 (577)
T ss_dssp ETTSCEEEEEECCS-----------------------------------SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred ECCCCEEEEEcCCC-----------------------------------CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence 98888887775431 1256799999999888878889999999765
Q ss_pred CcEEEE
Q 004302 427 GEIKEA 432 (762)
Q Consensus 427 g~I~ti 432 (762)
..+.++
T Consensus 499 ~~~~~~ 504 (577)
T 2ymu_A 499 QLLQTL 504 (577)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 544443
No 362
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.56 E-value=0.00016 Score=82.18 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
..+++.+..|||+||+|| ....|.|+++...|+++.+.-|+.+. .+ +..+++++
T Consensus 115 ~~~~~~i~~f~a~~C~~C-------~~~~~~l~~~a~~~~~v~~~~vd~~~------~~----~~~~~~~i--------- 168 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNC-------PDVVQALNLMAVLNPRIKHTAIDGGT------FQ----NEITERNV--------- 168 (521)
T ss_dssp CCSCEEEEEEECTTCSSH-------HHHHHHHHHHHHHCTTEEEEEEETTT------CH----HHHHHTTC---------
T ss_pred cCCCcceEEEECCCCcCc-------HHHHHHHHHHHhHcCceEEEEEechh------hH----HHHHHhCC---------
Confidence 458899999999999876 99999999999999988888887764 22 23333332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++|++++ +|+.+.. |..+.++|.+.++
T Consensus 169 ------~svPt~~i--~g~~~~~--G~~~~~~l~~~l~ 196 (521)
T 1hyu_A 169 ------MGVPAVFV--NGKEFGQ--GRMTLTEIVAKVD 196 (521)
T ss_dssp ------CSSSEEEE--TTEEEEE--SCCCHHHHHHHHC
T ss_pred ------CccCEEEE--CCEEEec--CCCCHHHHHHHHh
Confidence 24678777 7887755 8888877777764
No 363
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=97.53 E-value=2e-05 Score=66.51 Aligned_cols=38 Identities=5% Similarity=-0.209 Sum_probs=32.8
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
|+.||++||++| .+..|.|+++.++|+++.+.-|+++.
T Consensus 3 v~~f~~~~C~~C-------~~~~~~l~~l~~~~~~i~~~~vdi~~ 40 (85)
T 1ego_A 3 TVIFGRSGCPYC-------VRAKDLAEKLSNERDDFQYQYVDIRA 40 (85)
T ss_dssp EEEECCTTSTHH-------HHHHHHHHHHHHHHSSCEEEEECHHH
T ss_pred EEEEeCCCCCCH-------HHHHHHHHHHHhcCCCceEEEEeccc
Confidence 677999999876 99999999999998888888887653
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.46 E-value=0.00079 Score=77.45 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=85.2
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCC---------------------cEEEEEcCCC------c--EE-EEecCCCCCC
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNH---------------------HRIIVFDGNG------K--IL-DCIGSCPGFE 309 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~n---------------------hrI~v~d~~G------~--i~-~~iGsG~G~~ 309 (762)
..+.+.+|-+|+++|.++.||++-++| .+|+++..++ + +. ..+|..+...
T Consensus 379 GAT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~ 458 (592)
T 4a9v_A 379 GATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH 458 (592)
T ss_dssp TCCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS
T ss_pred CCccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccc
Confidence 346788999999999999999997764 6788886532 1 22 2333322211
Q ss_pred C-----C---cccccccCCcceEEEecCCCeEEE-EeC-----------CCCeEEEEeCCCCEEEEEeecCCCCCCCCch
Q 004302 310 D-----G---EFESSKLMRPAASFYHKDDDCLYI-VDS-----------ENHAIRRADMGRRVLETVYPTSGISKKNNSL 369 (762)
Q Consensus 310 D-----G---~~~~a~fn~P~GIavd~~~g~LYV-ADt-----------~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~ 369 (762)
+ | ......|+.|-+|++++ .|.||| .|. +|+.|.++++.++.+..++-..
T Consensus 459 ~~~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--------- 528 (592)
T 4a9v_A 459 AGTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------- 528 (592)
T ss_dssp TTSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---------
T ss_pred ccccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---------
Confidence 1 1 11134799999999997 789999 886 3679999999888888876221
Q ss_pred hhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEEC
Q 004302 370 WAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINR 414 (762)
Q Consensus 370 ~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~ 414 (762)
.+..|.|+++++|+ .|||+-+
T Consensus 529 ------------------------~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 529 ------------------------IGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp ------------------------TTCEEEEEEECTTSSEEEEEEE
T ss_pred ------------------------CCccccCCEECCCCCEEEEEEe
Confidence 02359999999984 6888753
No 365
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.41 E-value=0.021 Score=63.22 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=107.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
...+++++|.+..| ++=..++.|++++.+++.+..+-.. -....++++++++..|..+ +.++.|+.
T Consensus 346 ~v~~~~~s~~g~~l-~~~~~dg~v~~~~~~~~~~~~~~~~------------~~~v~~~~~s~dg~~l~~~-~~d~~v~~ 411 (577)
T 2ymu_A 346 SVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTLTGH------------SSSVRGVAFSPDGQTIASA-SDDKTVKL 411 (577)
T ss_dssp CEEEEEECTTSSEE-EEEETTSEEEEEETTCCEEEEEECC------------SSCEEEEEECTTSSCEEEE-ETTSEEEE
T ss_pred CEEEEEECCCCCEE-EEEeCCCEEEEEcCCCCEEEEecCC------------CCCeEEEEECCCCCEEEEE-eCCCEEEE
Confidence 34678888744444 4444577888899888877655321 1235789999855555444 45778999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|..+..+.++.+.. ...+++++++++.++++-..++.|++||..
T Consensus 412 ~~~~~~~~~~~~~~~-----------------------------------~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~ 456 (577)
T 2ymu_A 412 WNRNGQLLQTLTGHS-----------------------------------SSVWGVAFSPDDQTIASASDDKTVKLWNRN 456 (577)
T ss_dssp ECTTCCEEEEEECCS-----------------------------------SCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EeCCCCEEEEecCCC-----------------------------------CCeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 998877777774321 024678999998888887888999999986
Q ss_pred CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEE
Q 004302 426 SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLN 505 (762)
Q Consensus 426 ~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkid 505 (762)
+..+.++ .+....+.. + .++.++. ..+....++.|+|-|..+..++.+.
T Consensus 457 ~~~~~~~-~~~~~~v~~-------------------~------~~spd~~-----~las~~~d~~i~iw~~~~~~~~~~~ 505 (577)
T 2ymu_A 457 GQLLQTL-TGHSSSVRG-------------------V------AFSPDGQ-----TIASASDDKTVKLWNRNGQLLQTLT 505 (577)
T ss_dssp SCEEEEE-ECCSSCEEE-------------------E------EECTTSC-----EEEEEETTSEEEEEETTSCEEEEEE
T ss_pred CCEEEEE-cCCCCCEEE-------------------E------EEcCCCC-----EEEEEeCCCEEEEEcCCCCEEEEEe
Confidence 6555444 332211000 0 0001111 1233345666777776666666666
Q ss_pred CCCCcEEEEeecccc
Q 004302 506 RESGVCSNFQFSNFA 520 (762)
Q Consensus 506 l~~~~~sti~~s~~G 520 (762)
.-++.++.+.++..|
T Consensus 506 ~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 506 GHSSSVRGVAFSPDG 520 (577)
T ss_dssp CCSSCEEEEEECTTS
T ss_pred CCCCCEEEEEEcCCC
Confidence 666666666665544
No 366
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.38 E-value=0.00045 Score=74.05 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=77.3
Q ss_pred ccchhhHhhcCCCCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEE
Q 004302 73 SDTLSFIESTFNEFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIG 151 (762)
Q Consensus 73 ~~~~~~i~stl~~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~Vvg 151 (762)
.++..|++.... |.+..++.+.-. .+.+-..++++|.||+.||++| .+.+|.+++++++|++ +.|+.
T Consensus 105 ~~i~~fi~~~~~----p~v~~~~~~~~~-~~~~~~~~~~~v~F~~~~~~~~-------~~~~~~~~~~A~~~~~~i~f~~ 172 (361)
T 3uem_A 105 ENLLDFIKHNQL----PLVIEFTEQTAP-KIFGGEIKTHILLFLPKSVSDY-------DGKLSNFKTAAESFKGKILFIF 172 (361)
T ss_dssp HHHHHHHHHHSS----CSEEECSTTTHH-HHHSCSCCEEEEEECCSSSSSH-------HHHHHHHHHHHGGGTTTCEEEE
T ss_pred HHHHHHHHHcCC----CcceecCcccHH-HHhcCCCCcEEEEEEeCCchhH-------HHHHHHHHHHHHHccCceEEEE
Confidence 356666665432 223333332111 1222234688999999999876 9999999999999998 88888
Q ss_pred EEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccccCceE-EEEcCCCCEEEEe--cCCcCHHHHHHHHHHHHHh
Q 004302 152 FLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQMENGACY-LLSKDFGNARVFH--ENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 152 V~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~t-~lId~~G~iv~~~--~G~~~~~~L~~~l~~ll~~ 228 (762)
|+.+. ..-...++++++. .-+.|+ ++++..+....+. .|..+.+.|.+.++.++..
T Consensus 173 vd~~~--------~~~~~~~~~fgi~-------------~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 173 IDSDH--------TDNQRILEFFGLK-------------KEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp ECTTS--------GGGHHHHHHTTCC-------------TTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred ecCCh--------HHHHHHHHHcCCC-------------ccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcC
Confidence 87663 1123455566654 001333 2333323333333 3788999999999998876
Q ss_pred hccC
Q 004302 229 QQEN 232 (762)
Q Consensus 229 ~~~~ 232 (762)
...+
T Consensus 232 ~~~~ 235 (361)
T 3uem_A 232 KIKP 235 (361)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 4433
No 367
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=97.36 E-value=9e-05 Score=65.79 Aligned_cols=80 Identities=6% Similarity=-0.106 Sum_probs=51.5
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCc
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNF 187 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~ 187 (762)
.+++|+.||++||++| .+..|.|+++.+ ++.+.-|++++ ... .++.++++.
T Consensus 15 ~~~~v~~f~~~~C~~C-------~~~~~~L~~l~~---~i~~~~vdi~~----~~~----~el~~~~g~----------- 65 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLC-------DEAKEVLQPYKD---RFILQEVDITL----PEN----STWYERYKF----------- 65 (100)
T ss_dssp CCCEEEEEECSSCHHH-------HHHHHHTSTTSS---SSEEEEEETTS----STT----HHHHHHSSS-----------
T ss_pred CCCEEEEEeCCCCcch-------HHHHHHHHHhhh---CCeEEEEECCC----cch----HHHHHHHCC-----------
Confidence 4678888999999877 888888887643 37777777763 012 234444442
Q ss_pred cccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 188 PQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 188 ~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
++|++++ +|+.+ ..|..+.+.|+++|+++
T Consensus 66 -----~vP~l~~--~g~~~--~~~g~~~~~l~~~l~~~ 94 (100)
T 1wjk_A 66 -----DIPVFHL--NGQFL--MMHRVNTSKLEKQLRKL 94 (100)
T ss_dssp -----SCSEEEE--SSSEE--EESSCCHHHHHHHHHSS
T ss_pred -----CCCEEEE--CCEEE--EecCCCHHHHHHHHHHH
Confidence 3444444 35554 35667877787777644
No 368
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=97.36 E-value=0.00012 Score=75.15 Aligned_cols=117 Identities=9% Similarity=-0.083 Sum_probs=67.2
Q ss_pred cccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHH---------HHH
Q 004302 101 IHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLV---------EML 171 (762)
Q Consensus 101 v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~---------~f~ 171 (762)
+.+..-.+|++|+.||..|||+| ++..|.|+++.++ .+++|+-+.++- . ...+..... +|+
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C-------~~~~~~l~~~~~~-g~v~v~~~~~p~-~-~~~s~~~a~a~~~a~d~~~~~ 159 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYC-------KQFWQQARPWVDS-GKVQLRTLLVGV-I-KPESPATAAAILASKDPAKTW 159 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHH-------HHHHHHHHHHHHT-TSEEEEEEECCC-S-STTHHHHHHHHHHSSSHHHHH
T ss_pred ceECCCCCCeEEEEEECCCChhH-------HHHHHHHHHHHhC-CcEEEEEEECCc-C-CCcHHHHHHHHHHccCHHHHH
Confidence 44445578999999999999866 9999999998776 357776666541 0 001111111 222
Q ss_pred HhcCCCcc-------------e--eeCCCCcccccc---CceEEEEc-CCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 172 MKEYITFP-------------I--LLSNKNFPQMEN---GACYLLSK-DFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 172 ~k~~itfP-------------V--l~D~~~~~~~~y---gv~t~lId-~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
..+...|. + .++........+ |+|++++. .+|++ ....|..+.++|++.|++..+-
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~~~ 234 (241)
T 1v58_A 160 QQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKLQH 234 (241)
T ss_dssp HHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC----
T ss_pred HHHHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHHHh
Confidence 22211110 0 111111222334 56776664 57865 5678999999999888865543
No 369
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.29 E-value=0.017 Score=62.81 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=78.4
Q ss_pred CcceEEEccCCCEEEEEeC--CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CC
Q 004302 266 FPGCISADESGNRLFLSDS--NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--EN 340 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs--~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~N 340 (762)
....++++|.+..|+.+.. ++..|+++|. +|+.....+. . .....++++|++..|+++-+ ++
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~------------~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P------------RHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S------------SCEEEEEECTTSSEEEEEECTTSS
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C------------CcccCEEEcCCCCEEEEEEecCCC
Confidence 3466888887777765544 3479999998 5666544422 1 13567899997777875543 35
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEEC--CCC
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINR--SFE 417 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~--gN~ 417 (762)
..|+.+|+.++.+.++.+.. .....+++++||. |+++.. +..
T Consensus 247 ~~i~~~d~~~~~~~~l~~~~-----------------------------------~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 247 LNLYVMDLASGQIRQVTDGR-----------------------------------SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp CEEEEEETTTCCEEECCCCS-----------------------------------SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ceEEEEECCCCCEEeCcCCC-----------------------------------CcccceEECCCCCEEEEEECCCCCc
Confidence 67999999887766553211 1245678888886 554432 344
Q ss_pred EEEEEECCCCcEEEE
Q 004302 418 TLWIMDLASGEIKEA 432 (762)
Q Consensus 418 rI~v~d~~~g~I~ti 432 (762)
+|+++|..++.+..+
T Consensus 292 ~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQRI 306 (415)
T ss_dssp EEEEEETTSSCCEEC
T ss_pred EEEEEECCCCCEEEE
Confidence 899999988775543
No 370
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.28 E-value=0.013 Score=62.22 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=76.9
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+|++++ +++.+++=+..+.|+++|. +|+.+..+-. . -..-..+++++++..++++-+..+.|+.+
T Consensus 131 ~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~---h---------~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 131 STVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRA---H---------AAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC---C---------SSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcC---c---------CCceEEEEecCCCCCceeeeccccccccc
Confidence 5788887 4555555566788999997 6777665532 1 12246788887666788877778899999
Q ss_pred eCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEEEEEEC
Q 004302 347 DMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI~v~d~ 424 (762)
|..++.. .++...+ .-..+..+++.++ +.++++-..++.|++||.
T Consensus 198 d~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 198 DTRCPKPASQIGCSA---------------------------------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp ETTSSSCEEECC-------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cccccceeeeeecce---------------------------------eeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 9876532 2221110 0113567888874 678887778899999999
Q ss_pred CCCcE
Q 004302 425 ASGEI 429 (762)
Q Consensus 425 ~~g~I 429 (762)
.++..
T Consensus 245 ~~~~~ 249 (344)
T 4gqb_B 245 KSTSC 249 (344)
T ss_dssp CC--C
T ss_pred CCCcE
Confidence 87653
No 371
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=97.25 E-value=0.00031 Score=67.52 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=40.3
Q ss_pred cccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC--CC-eEEEEEEcC
Q 004302 101 IHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF--PQ-LQVIGFLHG 155 (762)
Q Consensus 101 v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y--~~-v~VvgV~~~ 155 (762)
+.+.+..++++|+.||..|||+| ....|.+.++.++| ++ ++|+-.+.+
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYC-------RKWFEESEELLAQSVKSGKVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHH-------HHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcch-------HHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence 45556689999999999999865 99999999999999 65 888877765
No 372
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=97.22 E-value=0.00056 Score=67.53 Aligned_cols=42 Identities=12% Similarity=-0.176 Sum_probs=36.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHG 155 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~ 155 (762)
.|+++|+.||..||++| ....|.|.++.++|++ +.+.-+.+.
T Consensus 23 ~~~v~vv~f~d~~Cp~C-------~~~~~~l~~~~~~~~~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHC-------AHLEPVLSKHAKSFKDDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHH-------HHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhH-------HHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 58999999999999866 9999999999999997 777766654
No 373
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.19 E-value=0.065 Score=54.01 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=78.9
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
...+++++.+..++++ ..++.|+++|. +++.+..+... -.....+++++++..|+++ +.++.|+.
T Consensus 144 i~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~-~~dg~i~~ 209 (337)
T 1gxr_A 144 CYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQFQGH------------TDGASCIDISNDGTKLWTG-GLDNTVRS 209 (337)
T ss_dssp EEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCC------------SSCEEEEEECTTSSEEEEE-ETTSEEEE
T ss_pred eEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceeeeeecc------------cCceEEEEECCCCCEEEEE-ecCCcEEE
Confidence 4678888755555555 45678999997 56666555321 1236789999855555555 46789999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|+.++......... ..+..++++++|.++++-..++.|++||..
T Consensus 210 ~d~~~~~~~~~~~~~-----------------------------------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 210 WDLREGRQLQQHDFT-----------------------------------SQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EETTTTEEEEEEECS-----------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EECCCCceEeeecCC-----------------------------------CceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 998877654432110 135678999998888777788999999998
Q ss_pred CCcEEE
Q 004302 426 SGEIKE 431 (762)
Q Consensus 426 ~g~I~t 431 (762)
++...+
T Consensus 255 ~~~~~~ 260 (337)
T 1gxr_A 255 KPDKYQ 260 (337)
T ss_dssp SSCEEE
T ss_pred CCCeEE
Confidence 876543
No 374
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=97.17 E-value=0.091 Score=57.73 Aligned_cols=187 Identities=11% Similarity=0.011 Sum_probs=111.6
Q ss_pred cccCCcceEEEccCCCEEEEEeCCC--------c-------EEEEEcC-CC--cEEEEecCCCCCCCCcccccccCCcce
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNH--------H-------RIIVFDG-NG--KILDCIGSCPGFEDGEFESSKLMRPAA 323 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~n--------h-------rI~v~d~-~G--~i~~~iGsG~G~~DG~~~~a~fn~P~G 323 (762)
..|-+..+|.+|+ .++|+|.|+|. . +|+.||. ++ +++..+--.... .... ..-..
T Consensus 84 ~~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~----~~~~--S~l~d 156 (381)
T 3q6k_A 84 KELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRL----VEKP--TYFGG 156 (381)
T ss_dssp CSSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGG----CCCG--GGEEE
T ss_pred cceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHh----cccC--Cccce
Confidence 4799999999995 89999999982 2 6999998 56 777665321000 0000 12356
Q ss_pred EEEe-c--C----CCeEEEEeCCCCeEEEEeCCCCEEEEEeecC-CCCCCCCchhhhhhhccCccccCCCccCCCCCCC-
Q 004302 324 SFYH-K--D----DDCLYIVDSENHAIRRADMGRRVLETVYPTS-GISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS- 394 (762)
Q Consensus 324 Iavd-~--~----~g~LYVADt~NhrIRkid~~~g~I~TiaG~G-~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~- 394 (762)
|++| . . ++..||+|++...|.++|+.++.--.+.-.. .+. ... .+ .-.|. ...
T Consensus 157 i~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~~~---~~--~i~G~------------~~~~ 218 (381)
T 3q6k_A 157 FAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-RPT---KF--DYGGK------------EYEF 218 (381)
T ss_dssp EEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-SCE---EE--EETTE------------EEEE
T ss_pred EEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-cCc---ce--EECCE------------EeEe
Confidence 7887 2 1 5789999999999999999988776664211 000 000 00 00010 001
Q ss_pred CCCcceEEEcCC-----CcEEEEECCCCEEEEEECC---CCcEEEEEcCCceeeEEeceehhhhhhhhccCCcccccccc
Q 004302 395 LIFPWHLMKSED-----DNLLIINRSFETLWIMDLA---SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQI 466 (762)
Q Consensus 395 L~~P~gIavd~d-----G~LYVAD~gN~rI~v~d~~---~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~ 466 (762)
...--|||++++ ..||..-....+++.+..+ +..+ .......|.
T Consensus 219 ~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~-------~~~v~~~G~--------------------- 270 (381)
T 3q6k_A 219 KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG-------KLNPELLGN--------------------- 270 (381)
T ss_dssp CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC-------CCCCEEEEE---------------------
T ss_pred ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch-------hhceEEeee---------------------
Confidence 124568888875 4688887777777776531 1100 000011111
Q ss_pred CCcccccCCCCc-ceeeeEEecCCEEEEEECCCCEEEEEECCC
Q 004302 467 DSSCSLKELPYA-GLISSSIAFQNHILLCDIVGQRIMRLNRES 508 (762)
Q Consensus 467 d~~~~~~~~p~~-~lgsav~~~~g~LYVADt~NhRIrkidl~~ 508 (762)
..|.+ ..+.+++..+|.||+++..++.|.+++..+
T Consensus 271 -------kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 271 -------RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -------CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -------cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 00111 112334346789999999999999999987
No 375
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.16 E-value=0.0094 Score=63.33 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=82.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-..+++++.+..++++-+..+.|+++|. +++....+... ..-..+..+++++.++.++++-+.++.|+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----------APGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecc----------eeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 3568888766678888888899999997 56666655431 011236788998877888888778899999
Q ss_pred EeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEEEEEE
Q 004302 346 ADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLWIMD 423 (762)
Q Consensus 346 id~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI~v~d 423 (762)
+|..++. +.++.|.. ..-+.|+++++| .++++=...+.|++||
T Consensus 242 wd~~~~~~~~~~~~h~-----------------------------------~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 242 VDTKSTSCVLSSAVHS-----------------------------------QCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp EESCC--CCEEEECCS-----------------------------------SCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred EECCCCcEEEEEcCCC-----------------------------------CCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 9987553 34443221 124578888887 4566666778999999
Q ss_pred CCCCcEEE
Q 004302 424 LASGEIKE 431 (762)
Q Consensus 424 ~~~g~I~t 431 (762)
..++++.+
T Consensus 287 ~~~~~~~~ 294 (344)
T 4gqb_B 287 SSLSELFR 294 (344)
T ss_dssp TTCCEEEE
T ss_pred CCCCcEEE
Confidence 98887543
No 376
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.16 E-value=0.068 Score=56.70 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=104.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEec-CCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIG-SCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iG-sG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...+|++++.+.+++++-..++.|+++|. +++.+..+. .+ .-.....+++++++..|+++. .++.|
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-~d~~i 200 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-----------HPDTIYSVDWSRDGALICTSC-RDKRV 200 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT-----------CCSCEEEEEECTTSSCEEEEE-TTSEE
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC-----------CCCceEEEEECCCCCEEEEEe-cCCcE
Confidence 45678898765456666667788999997 677666662 11 012357899998555555554 67899
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEE---CCCCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIIN---RSFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD---~gN~rI~ 420 (762)
+.+|+.++........+. . + ..+..+++.++|.++++- ..++.|+
T Consensus 201 ~iwd~~~~~~~~~~~~~~---~------------~-----------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 201 RVIEPRKGTVVAEKDRPH---E------------G-----------------TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp EEEETTTTEEEEEEECSS---C------------S-----------------SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred EEEeCCCCceeeeeccCC---C------------C-----------------CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 999998776543321110 0 0 136778888898888776 6788999
Q ss_pred EEECCCCcE-EEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 421 IMDLASGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 421 v~d~~~g~I-~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
+||..++.. ........ . .. ....++.+.+..||++-...+
T Consensus 249 iwd~~~~~~~~~~~~~~~-------------------------------~----~~---v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDT-------------------------------S----SG---VLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp EEETTBCSSCSEEEECCC-------------------------------C----SS---CEEEEEETTTTEEEEEETTCS
T ss_pred EEcCccccCCceEEeccC-------------------------------C----Cc---eeEEEEcCCCCEEEEEEcCCC
Confidence 999876532 00100000 0 00 012445566778888888888
Q ss_pred EEEEEECCCCc
Q 004302 500 RIMRLNRESGV 510 (762)
Q Consensus 500 RIrkidl~~~~ 510 (762)
.|+.+++.++.
T Consensus 291 ~i~i~d~~~~~ 301 (402)
T 2aq5_A 291 SIRYFEITSEA 301 (402)
T ss_dssp CEEEEEECSST
T ss_pred eEEEEEecCCC
Confidence 99999998876
No 377
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.14 E-value=0.093 Score=52.86 Aligned_cols=117 Identities=15% Similarity=0.032 Sum_probs=75.5
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-Cc--EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-GK--ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~--i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...+++++.+..|+++ ..++.|+++|.+ ++ ....+.. .-.....+++++++..|+++. .++.|
T Consensus 100 v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~-~dg~v 165 (337)
T 1gxr_A 100 IRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTS------------SAPACYALAISPDSKVCFSCC-SDGNI 165 (337)
T ss_dssp EEEEEECTTSSEEEEE-ESSSEEEEEECCCC--EEEEEEEC------------SSSCEEEEEECTTSSEEEEEE-TTSCE
T ss_pred EEEEEEcCCCCEEEEE-cCCCcEEEEECCCCCcceeeeccc------------CCCceEEEEECCCCCEEEEEe-CCCcE
Confidence 4678888754445554 457789999884 33 2222221 112356789988555565555 56789
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
+.+|..++......... -.....++++++|..+++-..++.|++||
T Consensus 166 ~~~d~~~~~~~~~~~~~----------------------------------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGH----------------------------------TDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEETTTTEEEEEECCC----------------------------------SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEeCCCCceeeeeecc----------------------------------cCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 99998876543332100 01367899999988777777889999999
Q ss_pred CCCCcEEE
Q 004302 424 LASGEIKE 431 (762)
Q Consensus 424 ~~~g~I~t 431 (762)
..++....
T Consensus 212 ~~~~~~~~ 219 (337)
T 1gxr_A 212 LREGRQLQ 219 (337)
T ss_dssp TTTTEEEE
T ss_pred CCCCceEe
Confidence 98876443
No 378
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.12 E-value=0.00068 Score=67.78 Aligned_cols=94 Identities=2% Similarity=-0.194 Sum_probs=61.8
Q ss_pred CCCCEEEEEEecc-CCCCccCCCCcchhhcHHHHHHHHHC--CC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 106 RGGAFLVLAGRFV-DNCDSLIAGCGTVVTFEKVKSIQQSF--PQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 106 ~rGK~VvLnFWAt-WC~pC~~p~C~~~~emP~L~~L~~~y--~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
.++.++|+.|++. ||+.| ++| +..+|.+.+++++| .+ +.|..|+.+. . .+..+++++.
T Consensus 19 ~~~~v~v~~~~~~~~~~~C--~~c--~~~~~~~~~~a~~~~~~~~v~~~~vd~~~------~----~~l~~~~~v~---- 80 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIGCESC--QTA--EELLKETVEVIGEAVGQDKIKLDIYSPFT------H----KEETEKYGVD---- 80 (229)
T ss_dssp CCSCEEEEEECCCTTCGGG--GHH--HHHHHHHHHHHHHHHCTTTEEEEEECTTT------C----HHHHHHTTCC----
T ss_pred ccCCeEEEEEccCCCCccc--HHH--HHHHHHHHHHHhccCCCCceEEEEecCcc------c----HHHHHHcCCC----
Confidence 3455555555333 35544 566 99999999998887 55 9888887654 2 2344555543
Q ss_pred eCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 182 LSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+.|++++-+.|+......|..+.+++...+..++..
T Consensus 81 -----------~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~ 116 (229)
T 2ywm_A 81 -----------RVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHV 116 (229)
T ss_dssp -----------BSSEEEEESSSCCCEEEESCCCTTHHHHHHHHHHHH
T ss_pred -----------cCcEEEEECCCcccceecCCccHHHHHHHHHHHHhc
Confidence 234544444667777778888888888888887754
No 379
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.06 E-value=0.042 Score=57.60 Aligned_cols=115 Identities=8% Similarity=-0.030 Sum_probs=80.9
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
-.++++++.+++++++=..++.|+++|..+.....+-...+. -.....+++++++..|++ -+.++.|+.+
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~-~~~d~~i~i~ 190 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW---------DYWYCCVDVSVSRQMLAT-GDSTGRLLLL 190 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCS---------SCCEEEEEEETTTTEEEE-EETTSEEEEE
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCC---------CCCeEEEEECCCCCEEEE-ECCCCCEEEE
Confidence 357888864556666667788999999987655544321111 123578999986555554 4567899999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEECC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d~~ 425 (762)
|+.+..+.++.+.. .....+++++++. ++++-..++.|++||..
T Consensus 191 d~~~~~~~~~~~h~-----------------------------------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 191 GLDGHEIFKEKLHK-----------------------------------AKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp ETTSCEEEEEECSS-----------------------------------SCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred ECCCCEEEEeccCC-----------------------------------CcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 99877777774321 1356799999887 88887888999999987
Q ss_pred C
Q 004302 426 S 426 (762)
Q Consensus 426 ~ 426 (762)
+
T Consensus 236 ~ 236 (383)
T 3ei3_B 236 N 236 (383)
T ss_dssp G
T ss_pred C
Confidence 6
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.03 E-value=0.0056 Score=70.47 Aligned_cols=105 Identities=19% Similarity=0.139 Sum_probs=66.4
Q ss_pred cccCCcceEEEecCCCeEEEEeCCC---------------------CeEEEEeCCCC-------EEEEEeecCCCCCCCC
Q 004302 316 SKLMRPAASFYHKDDDCLYIVDSEN---------------------HAIRRADMGRR-------VLETVYPTSGISKKNN 367 (762)
Q Consensus 316 a~fn~P~GIavd~~~g~LYVADt~N---------------------hrIRkid~~~g-------~I~TiaG~G~~~~~G~ 367 (762)
..|.+|.+|+++|.++.+|++=++| +.|.++...++ ....++-.|.+.....
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 5789999999999899999997765 34555543221 1121111111000000
Q ss_pred chhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEE-EEC-----------CCCEEEEEECCCCcEEEEE
Q 004302 368 SLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLI-INR-----------SFETLWIMDLASGEIKEAV 433 (762)
Q Consensus 368 ~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYV-AD~-----------gN~rI~v~d~~~g~I~ti~ 433 (762)
. .. .|. ...-....|++|-+|+++++|.||| +|. +|+.++++++.+|++..++
T Consensus 461 ~---~~---~g~-------~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl 525 (592)
T 4a9v_A 461 T---PK---GGS-------SNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM 525 (592)
T ss_dssp S---GG---GCC-------TTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE
T ss_pred c---cc---cCc-------cCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE
Confidence 0 00 000 0011235699999999999999999 786 4779999999999987764
No 381
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=96.91 E-value=0.00025 Score=59.68 Aligned_cols=36 Identities=6% Similarity=-0.135 Sum_probs=28.0
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLH 154 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~ 154 (762)
++-||++||++| +...|.|+++.++++. +.++-|+.
T Consensus 4 ~~~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~v~~ 40 (80)
T 2k8s_A 4 KAIFYHAGCPVC-------VSAEQAVANAIDPSKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEECSCHHH-------HHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred eEEEeCCCCCch-------HHHHHHHHHHHHhcCCeEEEEEecC
Confidence 567999999876 9999999999877753 66555543
No 382
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.24 Score=51.47 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=77.6
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..++++| +++.+++-...+.|.+++. +++....+... -.....++++|++..| ++-+.++.|+.+
T Consensus 126 ~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~------------~~~v~~~~~spdg~~l-asg~~dg~i~iw 191 (321)
T 3ow8_A 126 WTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTR------------GKFILSIAYSPDGKYL-ASGAIDGIINIF 191 (321)
T ss_dssp CCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECS------------SSCEEEEEECTTSSEE-EEEETTSCEEEE
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCC------------CceEEEEEECCCCCEE-EEEcCCCeEEEE
Confidence 4678887 4555566667888999987 45555444221 1224678999855444 444567789999
Q ss_pred eCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
|+.++.. .++.+.. .....++++++|.++++=...+.|++||..
T Consensus 192 d~~~~~~~~~~~~h~-----------------------------------~~v~~l~~spd~~~l~s~s~dg~i~iwd~~ 236 (321)
T 3ow8_A 192 DIATGKLLHTLEGHA-----------------------------------MPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236 (321)
T ss_dssp ETTTTEEEEEECCCS-----------------------------------SCCCEEEECTTSCEEEEECTTSCEEEEETT
T ss_pred ECCCCcEEEEEcccC-----------------------------------CceeEEEEcCCCCEEEEEcCCCeEEEEECC
Confidence 9987754 3332110 124679999999988888888999999998
Q ss_pred CCcEEEE
Q 004302 426 SGEIKEA 432 (762)
Q Consensus 426 ~g~I~ti 432 (762)
++.....
T Consensus 237 ~~~~~~~ 243 (321)
T 3ow8_A 237 HANLAGT 243 (321)
T ss_dssp TCCEEEE
T ss_pred CcceeEE
Confidence 7765433
No 383
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.84 E-value=0.07 Score=52.28 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=72.4
Q ss_pred CcceEEEccCCCEEEEEeC---CCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC-
Q 004302 266 FPGCISADESGNRLFLSDS---NHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH- 341 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh- 341 (762)
.+..+++++.+..|+++.. +..+|+.++.++.....+... .....+++++++..|+++...++
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~ 152 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-------------LPSYWHGWSPDGKSFTYCGIRDQV 152 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-------------SSEEEEEECTTSSEEEEEEEETTE
T ss_pred cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-------------CCccceEECCCCCEEEEEECCCCc
Confidence 3466888887777776653 368899998754333333211 12566789887777886655555
Q ss_pred -eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEE--CCCC
Q 004302 342 -AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIIN--RSFE 417 (762)
Q Consensus 342 -rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD--~gN~ 417 (762)
+|..++..++.+..+... -..+..++++++|. |+++. .+..
T Consensus 153 ~~l~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~s~dg~~l~~~~~~~~~~ 197 (297)
T 2ojh_A 153 FDIYSMDIDSGVETRLTHG-----------------------------------EGRNDGPDYSPDGRWIYFNSSRTGQM 197 (297)
T ss_dssp EEEEEEETTTCCEEECCCS-----------------------------------SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eEEEEEECCCCcceEcccC-----------------------------------CCccccceECCCCCEEEEEecCCCCc
Confidence 455555555554433211 11357788998876 55553 4556
Q ss_pred EEEEEECCCCcEEEE
Q 004302 418 TLWIMDLASGEIKEA 432 (762)
Q Consensus 418 rI~v~d~~~g~I~ti 432 (762)
+||.++..++.+..+
T Consensus 198 ~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 198 QIWRVRVDGSSVERI 212 (297)
T ss_dssp EEEEEETTSSCEEEC
T ss_pred cEEEECCCCCCcEEE
Confidence 788888766665544
No 384
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.83 E-value=0.048 Score=59.20 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=76.0
Q ss_pred CcceEEEccCCCEEEEEeC--CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CC
Q 004302 266 FPGCISADESGNRLFLSDS--NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--EN 340 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs--~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~N 340 (762)
....++++|.+..|+++-. ++..|+++|. +|+.....+.. .....++++|++..|+++-. +.
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~-------------~~~~~~~~spdg~~l~~~s~~~g~ 290 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQNLAFTSDQAGR 290 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS-------------SCEEEEEECTTSSEEEEEECTTSS
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCC-------------CcccceEECCCCCEEEEEECCCCC
Confidence 3467889987777875543 4667999998 45554332211 12456788887777776653 33
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECC--CC
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRS--FE 417 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~g--N~ 417 (762)
.+|.++|..++.+..+...+ .....++++++|. |+++... ..
T Consensus 291 ~~i~~~d~~~~~~~~l~~~~-----------------------------------~~~~~~~~spdG~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 291 PQVYKVNINGGAPQRITWEG-----------------------------------SQNQDADVSSDGKFMVMVSSNGGQQ 335 (415)
T ss_dssp CEEEEEETTSSCCEECCCSS-----------------------------------SEEEEEEECTTSSEEEEEEECSSCE
T ss_pred cEEEEEECCCCCEEEEecCC-----------------------------------CcccCeEECCCCCEEEEEECcCCce
Confidence 48888898776654442111 1245688888876 5555443 46
Q ss_pred EEEEEECCCCcEEEE
Q 004302 418 TLWIMDLASGEIKEA 432 (762)
Q Consensus 418 rI~v~d~~~g~I~ti 432 (762)
.|++||.+++.+..+
T Consensus 336 ~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 336 HIAKQDLATGGVQVL 350 (415)
T ss_dssp EEEEEETTTCCEEEC
T ss_pred EEEEEECCCCCEEEe
Confidence 899999998876543
No 385
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.82 E-value=0.041 Score=63.43 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=80.1
Q ss_pred cCCcceEEEccCCCEEEEEeCCCc-----EEEEEcC-CCcEEEEecCCCCCCCCcccc---------ccc---CCcceEE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHH-----RIIVFDG-NGKILDCIGSCPGFEDGEFES---------SKL---MRPAASF 325 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nh-----rI~v~d~-~G~i~~~iGsG~G~~DG~~~~---------a~f---n~P~GIa 325 (762)
...+..++++|++..|+.+....+ .|+++|. +|+....+.......+|.... .++ .....++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 446788999987777877665233 8999998 566655542210000110000 000 1246789
Q ss_pred EecCCCeEEEEeCCCCeEEEEeCCCC---EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEE
Q 004302 326 YHKDDDCLYIVDSENHAIRRADMGRR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM 402 (762)
Q Consensus 326 vd~~~g~LYVADt~NhrIRkid~~~g---~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIa 402 (762)
++|++..|+++.. +.|+.+|..++ .+..+.+. -..+..++
T Consensus 116 ~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~-----------------------------------~~~~~~~~ 158 (741)
T 2ecf_A 116 WSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG-----------------------------------EGFATDAK 158 (741)
T ss_dssp ECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS-----------------------------------SSCEEEEE
T ss_pred ECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC-----------------------------------Cccccccc
Confidence 9998888888875 78999998665 33222110 01367899
Q ss_pred EcCCCc-EEEEECCCCEEEEEECCCCcEEEE
Q 004302 403 KSEDDN-LLIINRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 403 vd~dG~-LYVAD~gN~rI~v~d~~~g~I~ti 432 (762)
+++||. |+.+. ++.|+++|.+++....+
T Consensus 159 ~SPDG~~la~~~--~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 159 LSPKGGFVSFIR--GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECTTSSEEEEEE--TTEEEEEETTTTEEEEC
T ss_pred CCCCCCEEEEEe--CCcEEEEecCCCCEEEe
Confidence 999987 44333 46899999998876655
No 386
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=96.80 E-value=0.047 Score=59.99 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=108.1
Q ss_pred cCCcceEEEccCCCEEEEEeCCCc-----EEEEEcC---------CCcEEEEecCCCCCCCCcccccccCCcceEEEecC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHH-----RIIVFDG---------NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD 329 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nh-----rI~v~d~---------~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~ 329 (762)
=..|.||++|..+++|||+-..-. .+-.++. +++++.-+ +.+ .....|.+..++.+|+
T Consensus 25 n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PY---P~w----~~~~~lvsV~~v~iD~- 96 (381)
T 3q6k_A 25 NMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKF---SGH----KTGKELTSIYQPVIDD- 96 (381)
T ss_dssp GCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEEC---TTC----SSSCSSSCEEEEEECT-
T ss_pred ccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCC---CCC----ccccceEEeeEEEEcC-
Confidence 357999999534799999876421 1112211 11110111 111 1234699999999996
Q ss_pred CCeEEEEeCCC--------C-------eEEEEeCCCC---EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCC
Q 004302 330 DDCLYIVDSEN--------H-------AIRRADMGRR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLD 391 (762)
Q Consensus 330 ~g~LYVADt~N--------h-------rIRkid~~~g---~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~ 391 (762)
.++|||.|++. . +|..||+.++ .+.++. -.. .. + .
T Consensus 97 ~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~-~p~----------------~~---~-------~ 149 (381)
T 3q6k_A 97 CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYY-FPT----------------RL---V-------E 149 (381)
T ss_dssp TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEE-CCG----------------GG---C-------C
T ss_pred CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEE-CCH----------------Hh---c-------c
Confidence 89999999882 1 7889999887 555552 110 00 0 0
Q ss_pred CCCCCCcceEEEc-C-------CCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccc
Q 004302 392 PQSLIFPWHLMKS-E-------DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463 (762)
Q Consensus 392 ~~~L~~P~gIavd-~-------dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~ 463 (762)
+. .+-.+|+|| . ++.+||+|.+..-|.++|..++.-.++...+-.+- ..
T Consensus 150 ~~--S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~~-------------------- 206 (381)
T 3q6k_A 150 KP--TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-RP-------------------- 206 (381)
T ss_dssp CG--GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-SC--------------------
T ss_pred cC--CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-cC--------------------
Confidence 00 124567887 2 57899999999999999999998766642110000 00
Q ss_pred cccCCcccccCCCC----cceeeeEEec----CCEEEEEECCCCEEEEEE
Q 004302 464 HQIDSSCSLKELPY----AGLISSSIAF----QNHILLCDIVGQRIMRLN 505 (762)
Q Consensus 464 ~~~d~~~~~~~~p~----~~lgsav~~~----~g~LYVADt~NhRIrkid 505 (762)
..+..+|.++ ...|.++++. +..||..--.+.++..|.
T Consensus 207 ----~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~ 252 (381)
T 3q6k_A 207 ----TKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVN 252 (381)
T ss_dssp ----EEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEE
T ss_pred ----cceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEE
Confidence 0011122221 2356777665 568999998888888886
No 387
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=96.79 E-value=0.0051 Score=62.93 Aligned_cols=87 Identities=10% Similarity=-0.027 Sum_probs=60.2
Q ss_pred CCEEEEEEeccC--CCCccCCCCcchhhcHHHHHHHHHCCC------eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 108 GAFLVLAGRFVD--NCDSLIAGCGTVVTFEKVKSIQQSFPQ------LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 108 GK~VvLnFWAtW--C~pC~~p~C~~~~emP~L~~L~~~y~~------v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
+++|+|.||+.| |++| .+..|.++++.+.++. +.|+-++.++ . .+..+++++.
T Consensus 25 ~~pv~v~~~~~~~~c~~c-------~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~------~----~~~~~~~gv~-- 85 (243)
T 2hls_A 25 VNPVEVHVFLSKSGCETC-------EDTLRLMKLFEEESPTRNGGKLLKLNVYYRES------D----SDKFSEFKVE-- 85 (243)
T ss_dssp CSCEEEEEEECSSSCTTH-------HHHHHHHHHHHHHSCEETTEESEEEEEEETTT------T----HHHHHHTTCC--
T ss_pred CCCEEEEEEeCCCCCCch-------HHHHHHHHHHHHhccCCCCCceeEEEEecCCc------C----HHHHHhcCCC--
Confidence 578999999999 9866 9999999999998754 7777776654 2 2334555543
Q ss_pred eeeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++|+++|- +| ..+..|....+.+...+..++...
T Consensus 86 -------------~~Pt~~i~-~g--~~~~~G~~~~~~l~~fv~~~l~~~ 119 (243)
T 2hls_A 86 -------------RVPTVAFL-GG--EVRWTGIPAGEEIRALVEVIMRLS 119 (243)
T ss_dssp -------------SSSEEEET-TT--TEEEESCCCTTHHHHHHHHHHHHH
T ss_pred -------------cCCEEEEE-CC--ceeEcCCCcHHHHHHHHHHHHhcc
Confidence 34665554 45 344556556577888888777643
No 388
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.76 E-value=0.025 Score=59.91 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=76.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-.+|+++| +++.+++=..++.|+++|. +++.+..+-.. -.....++++++++.++++-..++.|+.
T Consensus 142 V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------------~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 142 VKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------------SSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCC------------SSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------------CCCEEEEEEccCCCceeeeeccCCceEE
Confidence 35788887 4555555556788999998 56766655321 1234678888766667888778889999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEEEEEEC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETLWIMDL 424 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI~v~d~ 424 (762)
+|..++....... . ...-..+..|++.++ +.++++-..++.|++||.
T Consensus 209 wd~~~~~~~~~~~--------------------~------------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 209 WDTRKPKPATRID--------------------F------------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp CCTTSSSCBCBCC--------------------C------------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred EECCCCceeeeee--------------------e------------ccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 9976432111000 0 000124678899886 567776667889999998
Q ss_pred CCCcE
Q 004302 425 ASGEI 429 (762)
Q Consensus 425 ~~g~I 429 (762)
.++..
T Consensus 257 ~~~~~ 261 (357)
T 4g56_B 257 KNPDS 261 (357)
T ss_dssp SCGGG
T ss_pred CCCcE
Confidence 87653
No 389
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.75 E-value=0.16 Score=53.16 Aligned_cols=125 Identities=15% Similarity=0.072 Sum_probs=83.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.-.++++++.+.+++++-..++.|+++|.. ++....+-. .+. -..-..++++++++.++++=+.++.|+
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h---------~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MGP---------GDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CST---------TCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-CCc---------CCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 346788887553566665668899999984 555544421 011 123567888874445555556678999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.+|..+..+.++.+... . -.....+++.+++.++++-..++.|++||.
T Consensus 145 iwd~~~~~~~~~~~~~~-----------------~---------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 145 LRDFSGSVIQVFAKTDS-----------------W---------------DYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp EEETTSCEEEEEECCCC-----------------S---------------SCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred EEECCCCceEEEeccCC-----------------C---------------CCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 99999888777753310 0 123678899999888888888899999998
Q ss_pred CCCcEEEE
Q 004302 425 ASGEIKEA 432 (762)
Q Consensus 425 ~~g~I~ti 432 (762)
.+..+.++
T Consensus 193 ~~~~~~~~ 200 (383)
T 3ei3_B 193 DGHEIFKE 200 (383)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 65555444
No 390
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.72 E-value=0.13 Score=52.40 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=70.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
++++ .++.|||+. .++.|..+|.+|+....+... -.....+++++ ++.|||+. +.|.++|.+
T Consensus 142 ~~~~-~~g~l~vgt-~~~~l~~~d~~g~~~~~~~~~------------~~~~~~~~~d~-~g~l~v~t---~~l~~~d~~ 203 (330)
T 3hxj_A 142 PIVS-EDGTIYVGS-NDNYLYAINPDGTEKWRFKTN------------DAITSAASIGK-DGTIYFGS---DKVYAINPD 203 (330)
T ss_dssp CEEC-TTSCEEEEC-TTSEEEEECTTSCEEEEEECS------------SCCCSCCEECT-TCCEEEES---SSEEEECTT
T ss_pred eEEc-CCCEEEEEc-CCCEEEEECCCCCEeEEEecC------------CCceeeeEEcC-CCEEEEEe---CEEEEECCC
Confidence 3566 378899976 457899999988776555321 01234567774 78899998 679999954
Q ss_pred CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 350 RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 350 ~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
+..+.... .+ -.....++++++|.|||+.. ++.|.+++.++..+
T Consensus 204 g~~~~~~~-~~----------------------------------~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~ 247 (330)
T 3hxj_A 204 GTEKWNFY-AG----------------------------------YWTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEK 247 (330)
T ss_dssp SCEEEEEC-CS----------------------------------SCCCSCCEECTTSCEEEEET-TTEEEEECTTSCEE
T ss_pred CcEEEEEc-cC----------------------------------CcceeceEECCCCeEEEEcC-CCeEEEECCCCCEe
Confidence 44443331 10 02356678888899999985 56788888654443
No 391
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.70 E-value=0.26 Score=51.21 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=80.3
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+++++ ++.++++-+.++.|+++|. +|+.+..+..+. .....++++|+ +..+++-+..+.|+.+
T Consensus 84 ~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~------------~~~~~~~~spd-g~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 84 VSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGP------------VDAWTLAFSPD-SQYLATGTHVGKVNIF 149 (321)
T ss_dssp EEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT------------TCCCCEEECTT-SSEEEEECTTSEEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC------------ccEEEEEECCC-CCEEEEEcCCCcEEEE
Confidence 4567775 5566777777889999997 677666554321 12456889984 5556666778899999
Q ss_pred eCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+..++.. .++.+.+ .....++++++|.++++-..++.|++||..
T Consensus 150 ~~~~~~~~~~~~~~~-----------------------------------~~v~~~~~spdg~~lasg~~dg~i~iwd~~ 194 (321)
T 3ow8_A 150 GVESGKKEYSLDTRG-----------------------------------KFILSIAYSPDGKYLASGAIDGIINIFDIA 194 (321)
T ss_dssp ETTTCSEEEEEECSS-----------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EcCCCceeEEecCCC-----------------------------------ceEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9876533 2332111 135678999999988888888999999998
Q ss_pred CCcEEEEE
Q 004302 426 SGEIKEAV 433 (762)
Q Consensus 426 ~g~I~ti~ 433 (762)
++.....+
T Consensus 195 ~~~~~~~~ 202 (321)
T 3ow8_A 195 TGKLLHTL 202 (321)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEE
Confidence 88654333
No 392
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.69 E-value=0.11 Score=59.65 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=78.2
Q ss_pred cCCcceEEEccCCCEEEEEe--------------------------------CCCcEEEEEcCCCcEEEEecCCCCCCCC
Q 004302 264 LHFPGCISADESGNRLFLSD--------------------------------SNHHRIIVFDGNGKILDCIGSCPGFEDG 311 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVAD--------------------------------s~nhrI~v~d~~G~i~~~iGsG~G~~DG 311 (762)
+..+.+++.+|++..|+++. ....+|+++|.++.-...+-.+.+
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~---- 255 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP---- 255 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC----
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC----
Confidence 45678899998777887664 145678888875432222211100
Q ss_pred cccccccCCcceEEEecCCCeEEEEeCCC----CeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCc
Q 004302 312 EFESSKLMRPAASFYHKDDDCLYIVDSEN----HAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTK 386 (762)
Q Consensus 312 ~~~~a~fn~P~GIavd~~~g~LYVADt~N----hrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~ 386 (762)
.-..+..++++|++..|+++.... ..|+.+|..++ .+.++..... . +
T Consensus 256 -----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~----~-----------~-------- 307 (706)
T 2z3z_A 256 -----KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD----K-----------H-------- 307 (706)
T ss_dssp -----TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC----S-----------S--------
T ss_pred -----CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC----C-----------C--------
Confidence 012367789998777788854322 38999999888 7776643210 0 0
Q ss_pred cCCCCCCCCCCcceEEEcC--CCcEEE-EEC-CCCEEEEEECCCCcEEEE
Q 004302 387 SEKLDPQSLIFPWHLMKSE--DDNLLI-INR-SFETLWIMDLASGEIKEA 432 (762)
Q Consensus 387 ~~~~~~~~L~~P~gIavd~--dG~LYV-AD~-gN~rI~v~d~~~g~I~ti 432 (762)
.......+++++ ||.+++ ++. +..+|+.++.+++.+.++
T Consensus 308 -------~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 308 -------YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp -------CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred -------eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec
Confidence 011235677888 876544 433 346788888766655544
No 393
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.68 E-value=0.012 Score=66.34 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=52.9
Q ss_pred ccCCcceEEEccCCC-EEEEEeCCCcEEEEEcCCCcEE--EEecCCCCCCCCcccccccCCcceEEEecC---CCeEEEE
Q 004302 263 LLHFPGCISADESGN-RLFLSDSNHHRIIVFDGNGKIL--DCIGSCPGFEDGEFESSKLMRPAASFYHKD---DDCLYIV 336 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g-~LYVADs~nhrI~v~d~~G~i~--~~iGsG~G~~DG~~~~a~fn~P~GIavd~~---~g~LYVA 336 (762)
.|..|++|++.|.+. +|||++. ..+|++++.+|... .+.+-..-+..|. .......+.|||++|+ ++.|||+
T Consensus 12 gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~~~g~-~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 12 GLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLVQSGI-KGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp EESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTBCCCC-SSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcceeccCc-cccCCCcceeeEeCCCCcCCCEEEEE
Confidence 599999999998553 7999997 57999998876531 1111100011110 0001234789999984 5899998
Q ss_pred eCCC------------CeEEEEeCC
Q 004302 337 DSEN------------HAIRRADMG 349 (762)
Q Consensus 337 Dt~N------------hrIRkid~~ 349 (762)
-+.. ++|.++...
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~ 114 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVS 114 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBC
T ss_pred EeCCCCCcccCCcccceEEEEEEEc
Confidence 6531 377777654
No 394
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.62 E-value=0.12 Score=53.81 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=83.8
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC---
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN--- 340 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N--- 340 (762)
....++++++. + ++++-..++.|+++|. +++.+..+-...+.. ..-.....+++++++..|+++. .+
T Consensus 187 ~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~------~~~~~i~~i~~~~~~~~l~~~~-~d~~~ 257 (397)
T 1sq9_A 187 QFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMI------NNSNSIRSVKFSPQGSLLAIAH-DSNSF 257 (397)
T ss_dssp CCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---------CCCCCEEEEEECSSTTEEEEEE-EETTE
T ss_pred CCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEEEecccccc------ccCCccceEEECCCCCEEEEEe-cCCCC
Confidence 44678999974 4 6666678899999998 566665553200010 0012367889998655555554 44
Q ss_pred CeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
+.|+.+|..++ .+.++.+.. ..... . .+. ...-.....++++++|.++++-..++.|
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~---~~~~~----~---~~~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPT---HSSQA----S---LGE------------FAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC------------------CC------------BSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ceEEEEECCCCcccceeccCc---ccccc----c---ccc------------cccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 79999998655 445553311 00000 0 000 0011246789999999888888889999
Q ss_pred EEEECCCCcEEEE
Q 004302 420 WIMDLASGEIKEA 432 (762)
Q Consensus 420 ~v~d~~~g~I~ti 432 (762)
++||..++.....
T Consensus 316 ~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 316 RFWDVKTKERITT 328 (397)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEEcCCCceeEE
Confidence 9999988765433
No 395
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.60 E-value=0.031 Score=60.46 Aligned_cols=120 Identities=10% Similarity=0.107 Sum_probs=80.9
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+|+.+|.++++.++=+.++.|+++|.+ ++....+-. .|.. ..=.+|+++|.++.++++=+..+.|+.+
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~---------~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAG---------GSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSS---------CCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCC---------CCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 5788888777777666677889999873 332222211 1111 1236788887566666776778899999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
|++++.+.++..... . -..-..++++++|.++++=..++.|++||.++
T Consensus 193 d~~~~~~~~~~~~~~-----------------~---------------~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 193 DFKGNILRVFASSDT-----------------I---------------NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp ETTSCEEEEEECCSS-----------------C---------------SCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred eccCCceeEEeccCC-----------------C---------------CccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence 999888877753310 0 01234688888998888888889999999876
Q ss_pred CcE
Q 004302 427 GEI 429 (762)
Q Consensus 427 g~I 429 (762)
..+
T Consensus 241 ~~~ 243 (435)
T 4e54_B 241 KEL 243 (435)
T ss_dssp CBC
T ss_pred cee
Confidence 543
No 396
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.60 E-value=0.18 Score=53.77 Aligned_cols=125 Identities=16% Similarity=0.221 Sum_probs=75.8
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC-CCCCCC-ccccc----ccCCcceEEEecCCCeEEEEeCCC
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC-PGFEDG-EFESS----KLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG-~G~~DG-~~~~a----~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.+|+++|.+..|..+ .+..|++++. +|+.+..+... ....+. ..... .-..-..+++++++. ++++-+.+
T Consensus 68 ~~v~fspdg~~la~g--~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d 144 (393)
T 1erj_A 68 CCVKFSNDGEYLATG--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAED 144 (393)
T ss_dssp CEEEECTTSSEEEEE--CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETT
T ss_pred EEEEECCCCCEEEEE--cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC-EEEEEcCC
Confidence 578888755544443 3567888886 67776655321 110000 00000 001135789998544 44555567
Q ss_pred CeEEEEeCCCCEEEEEe-ecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRADMGRRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~I~Tia-G~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
+.|+.+|..++...... |.. ...+.+++.++|..+++-...+.|
T Consensus 145 ~~i~iwd~~~~~~~~~~~~h~-----------------------------------~~v~~~~~~p~~~~l~s~s~d~~v 189 (393)
T 1erj_A 145 RLIRIWDIENRKIVMILQGHE-----------------------------------QDIYSLDYFPSGDKLVSGSGDRTV 189 (393)
T ss_dssp SCEEEEETTTTEEEEEECCCS-----------------------------------SCEEEEEECTTSSEEEEEETTSEE
T ss_pred CeEEEEECCCCcEEEEEccCC-----------------------------------CCEEEEEEcCCCCEEEEecCCCcE
Confidence 89999999877654332 110 124678898999888888889999
Q ss_pred EEEECCCCcEE
Q 004302 420 WIMDLASGEIK 430 (762)
Q Consensus 420 ~v~d~~~g~I~ 430 (762)
++||..++...
T Consensus 190 ~iwd~~~~~~~ 200 (393)
T 1erj_A 190 RIWDLRTGQCS 200 (393)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeeE
Confidence 99999887643
No 397
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=96.59 E-value=0.00045 Score=68.94 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=38.1
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCC-eEEEEEEcCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~-v~VvgV~~~~ 156 (762)
..++++||.||+.||++| ....|.| ++|.++|++ +.|.-++++.
T Consensus 111 ~~~~~~vveFf~~~C~~C-------~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~ 158 (197)
T 1un2_A 111 VAGAPQVLEFFSFFCPHC-------YQFEEVLHISDNVKKKLPEGVKMTKYHVNF 158 (197)
T ss_dssp CTTCCSEEEEECTTCHHH-------HHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred CCCCCEEEEEECCCChhH-------HHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence 357899999999999866 9999988 999999997 8888888764
No 398
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.58 E-value=0.21 Score=50.69 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=76.1
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+++++. ++++++-..++.|+++|. +++.+..+.... ..-..+++++++. ++++-+.++.|+.+
T Consensus 111 ~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~~~~~~-~l~~~~~d~~i~~w 176 (312)
T 4ery_A 111 FCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHS------------DPVSAVHFNRDGS-LIVSSSYDGLCRIW 176 (312)
T ss_dssp EEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEEECCCS------------SCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCCC------------CcEEEEEEcCCCC-EEEEEeCCCcEEEE
Confidence 56778864 455555556788999997 566665553211 1246788887544 44555567789999
Q ss_pred eCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
|..++. +.++.... -..-..++++++|..+++-..++.|++||..
T Consensus 177 d~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 177 DTASGQCLKTLIDDD----------------------------------NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp ETTTCCEEEEECCSS----------------------------------CCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred ECCCCceeeEEeccC----------------------------------CCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 987654 33332110 0013458888999888888888999999998
Q ss_pred CCcEEEE
Q 004302 426 SGEIKEA 432 (762)
Q Consensus 426 ~g~I~ti 432 (762)
++.....
T Consensus 223 ~~~~~~~ 229 (312)
T 4ery_A 223 KGKCLKT 229 (312)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 8765433
No 399
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=96.57 E-value=0.0012 Score=70.05 Aligned_cols=87 Identities=8% Similarity=-0.180 Sum_probs=50.8
Q ss_pred cccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcce
Q 004302 101 IHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPI 180 (762)
Q Consensus 101 v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPV 180 (762)
..+.+.-.+..++.|||+||+|| ++..|.++++.++++ . |..+.. + ..++-.+..+++++
T Consensus 190 ~~la~~l~~~~vV~F~A~WC~~C-------k~l~p~le~lA~~l~---~--Vd~d~~-d---~~~~~~~la~~~gI---- 249 (291)
T 3kp9_A 190 VGLAAHLRQIGGTMYGAYWCPHC-------QDQKELFGAAFDQVP---Y--VECSPN-G---PGTPQAQECTEAGI---- 249 (291)
T ss_dssp HHHHHHHHHTTCEEEECTTCHHH-------HHHHHHHGGGGGGSC---E--EESCSS-C---SSSCCCHHHHTTTC----
T ss_pred HHHHHHhCCCCEEEEECCCCHHH-------HHHHHHHHHHHHHcC---E--EEEeec-C---chhhHHHHHHHcCC----
Confidence 34444333444799999999876 999999999987764 2 233320 0 00000111222222
Q ss_pred eeCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 181 LLSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 181 l~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++||+++ +|+. ..|..+.++|++.+.
T Consensus 250 -----------~~vPT~~i--~G~~---~~G~~~~~~L~~~l~ 276 (291)
T 3kp9_A 250 -----------TSYPTWII--NGRT---YTGVRSLEALAVASG 276 (291)
T ss_dssp -----------CSTTEEEE--TTEE---EESCCCHHHHHHHTC
T ss_pred -----------cccCeEEE--CCEE---ecCCCCHHHHHHHHC
Confidence 24567777 5653 788888887776654
No 400
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.57 E-value=0.66 Score=48.99 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=77.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-Cc-------EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-GK-------ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS 338 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~-------i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt 338 (762)
-.++++++.+++++++-..++.|++++.. +. .+..+.. .-.....+++++++.+++++-+
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~------------h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG------------HTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC------------CSSCEEEEEECSSBTTEEEEEE
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC------------CCCeEEEEEECcCCCCEEEEEc
Confidence 46788887455565555667889999873 31 1222211 1133578899986545666656
Q ss_pred CCCeEEEEeCCCCEEEEEee-cCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCC
Q 004302 339 ENHAIRRADMGRRVLETVYP-TSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE 417 (762)
Q Consensus 339 ~NhrIRkid~~~g~I~TiaG-~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~ 417 (762)
..+.|+.+|..++....... .+ . -.....++++++|.++++-..++
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~------------------~---------------~~~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDV------------------H---------------PDTIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTT------------------C---------------CSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEECCCCCccEEEecCC------------------C---------------CCceEEEEECCCCCEEEEEecCC
Confidence 67889999998775543321 11 0 01357899999988777777889
Q ss_pred EEEEEECCCCcEE
Q 004302 418 TLWIMDLASGEIK 430 (762)
Q Consensus 418 rI~v~d~~~g~I~ 430 (762)
.|++||..++...
T Consensus 199 ~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 199 RVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEeCCCCcee
Confidence 9999999887644
No 401
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.54 E-value=0.17 Score=49.42 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=71.6
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC---CC
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---EN 340 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---~N 340 (762)
...+++++|.+..|+++. ...|+++|.+ ++.....-. . .-..+..++++|++..|+++.. +.
T Consensus 43 ~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~-~----------~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTG-F----------ATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp CCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCT-T----------CCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred ceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccc-c----------ccccccceEECCCCCEEEEEEeCCCCc
Confidence 456789998666666654 5689999884 444433211 0 0123567889987777777763 25
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCC--
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFE-- 417 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~-- 417 (762)
.+|..++..++....+... .....++++++|. |+++...++
T Consensus 110 ~~l~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~spdg~~l~~~~~~~~~~ 153 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTKN------------------------------------LPSYWHGWSPDGKSFTYCGIRDQVF 153 (297)
T ss_dssp CEEEEEETTCCCCEECCSS------------------------------------SSEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceEEEEECCCCceEEeecC------------------------------------CCccceEECCCCCEEEEEECCCCce
Confidence 6888888765544333110 1256678888876 554544444
Q ss_pred EEEEEECCCCcEEEE
Q 004302 418 TLWIMDLASGEIKEA 432 (762)
Q Consensus 418 rI~v~d~~~g~I~ti 432 (762)
+||.++..++.+..+
T Consensus 154 ~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 154 DIYSMDIDSGVETRL 168 (297)
T ss_dssp EEEEEETTTCCEEEC
T ss_pred EEEEEECCCCcceEc
Confidence 566776776665443
No 402
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.24 Score=50.39 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=74.3
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-.+|++++.+..|+++ ..++.|+++|. +++.+..+... -..-..+++++++..|+.+ ..++.|+.
T Consensus 35 v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~l~s~-~~dg~i~i 100 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSC-SKDSSASVWYSLNGERLGTLDGH------------TGTIWSIDVDCFTKYCVTG-SADYSIKL 100 (369)
T ss_dssp EEEEEECTTSCEEEEE-ESSSCEEEEETTTCCEEEEECCC------------SSCEEEEEECTTSSEEEEE-ETTTEEEE
T ss_pred EEEEEEcCCCCEEEEE-eCCCEEEEEeCCCchhhhhhhhc------------CCcEEEEEEcCCCCEEEEE-eCCCeEEE
Confidence 4668899754445544 45778999986 67776665321 1225678898855555544 45789999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCC-----CEEE
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSF-----ETLW 420 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN-----~rI~ 420 (762)
+|+.++......... ..+..++++++|..+++-..+ +.|+
T Consensus 101 wd~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 101 WDVSNGQCVATWKSP-----------------------------------VPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp EETTTCCEEEEEECS-----------------------------------SCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred EECCCCcEEEEeecC-----------------------------------CCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence 998766443332111 136778999998888877777 8999
Q ss_pred EEECCCC
Q 004302 421 IMDLASG 427 (762)
Q Consensus 421 v~d~~~g 427 (762)
+||..++
T Consensus 146 ~~d~~~~ 152 (369)
T 3zwl_B 146 IYEIERD 152 (369)
T ss_dssp EEEEEEC
T ss_pred EEEecCC
Confidence 9987544
No 403
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.54 E-value=0.13 Score=52.55 Aligned_cols=112 Identities=10% Similarity=0.036 Sum_probs=75.4
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-.+|+++|.+ .+.++=...+.|+++|. ++..+..+-... ..-..+++.+++ .++++-+..+.|+.
T Consensus 16 V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~------------~~v~~~~~~~~~-~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 16 VKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTE------------TPVRAGKFIARK-NWIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCS------------SCEEEEEEEGGG-TEEEEEETTSEEEE
T ss_pred eEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccC------------CcEEEEEEeCCC-CEEEEECCCCEEEE
Confidence 4678999854 44555556789999998 566555543211 112457788754 44555556789999
Q ss_pred EeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 346 ADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 346 id~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
+|..++. +.++.+.. ..-+.|++.+++.++++=...+.|++||.
T Consensus 82 wd~~~~~~~~~~~~h~-----------------------------------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHP-----------------------------------DYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp EETTTCCEEEEEECCS-----------------------------------SCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred EECCCCcEEEEEeCCC-----------------------------------CcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence 9987653 44443221 12467899999988888888999999998
Q ss_pred CCC
Q 004302 425 ASG 427 (762)
Q Consensus 425 ~~g 427 (762)
.++
T Consensus 127 ~~~ 129 (304)
T 2ynn_A 127 ENN 129 (304)
T ss_dssp GGT
T ss_pred CCC
Confidence 766
No 404
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.53 E-value=0.52 Score=48.56 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=76.2
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+++++ ++..+++=+..+.|+++|. +|+.+..+-. . -..-..+++++ ++.++++-+..+.|+.+
T Consensus 69 ~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~---h---------~~~v~~~~~~~-~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 69 QDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVG---H---------KSDVMSVDIDK-KASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC---C---------SSCEEEEEECT-TSCEEEEEETTSCEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEcc---C---------CCcEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 4678886 4555566667889999997 6776655422 1 11246788887 45566666677889999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC------CCcEEEEECCCCEEE
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE------DDNLLIINRSFETLW 420 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~------dG~LYVAD~gN~rI~ 420 (762)
|..+..+.++.|... ....+++.+ ++.++++-...+.|+
T Consensus 135 d~~~~~~~~~~~h~~-----------------------------------~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 179 (319)
T 3frx_A 135 TIKGQCLATLLGHND-----------------------------------WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179 (319)
T ss_dssp ETTSCEEEEECCCSS-----------------------------------CEEEEEECCC------CCEEEEEETTSCEE
T ss_pred ECCCCeEEEEeccCC-----------------------------------cEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence 998888888754320 112233322 455777777888999
Q ss_pred EEECCCCcEEEEE
Q 004302 421 IMDLASGEIKEAV 433 (762)
Q Consensus 421 v~d~~~g~I~ti~ 433 (762)
.||..++.+...+
T Consensus 180 ~wd~~~~~~~~~~ 192 (319)
T 3frx_A 180 AWNLNQFQIEADF 192 (319)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCcchhheee
Confidence 9999877654333
No 405
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.52 E-value=0.045 Score=62.27 Aligned_cols=122 Identities=8% Similarity=-0.030 Sum_probs=77.7
Q ss_pred CcceEEEccCCCEEEEEeC---------CCcEEEEEcCCC------cEEEEec-CCCCCCCCcccccccCCcceEEEecC
Q 004302 266 FPGCISADESGNRLFLSDS---------NHHRIIVFDGNG------KILDCIG-SCPGFEDGEFESSKLMRPAASFYHKD 329 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~~G------~i~~~iG-sG~G~~DG~~~~a~fn~P~GIavd~~ 329 (762)
.+..++++|++..|+.+.. +...|++++.++ .-...+- .+. ....+++++|+
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~SpD 198 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH------------RFVTGPRLSPD 198 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS------------SEECCCEECTT
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC------------CcccCceECCC
Confidence 4567889987778875542 236899998865 2222221 111 12345678888
Q ss_pred CCeEEEEeCC-------CCeEEEEeCC-CC---EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCc
Q 004302 330 DDCLYIVDSE-------NHAIRRADMG-RR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 398 (762)
Q Consensus 330 ~g~LYVADt~-------NhrIRkid~~-~g---~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P 398 (762)
+..|+++... ...|+.+|.+ ++ ....+.+.. -..+
T Consensus 199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----------------------------------~~~~ 244 (662)
T 3azo_A 199 GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----------------------------------EEAI 244 (662)
T ss_dssp SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----------------------------------TBCE
T ss_pred CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----------------------------------CceE
Confidence 8788766532 2589999987 46 555553210 0135
Q ss_pred ceEEEcCCCcEEEEECCCC--EEEEEECCCCcEEEEE
Q 004302 399 WHLMKSEDDNLLIINRSFE--TLWIMDLASGEIKEAV 433 (762)
Q Consensus 399 ~gIavd~dG~LYVAD~gN~--rI~v~d~~~g~I~ti~ 433 (762)
..+++++||.||++...++ +|+++|.+++.+..+.
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC 281 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence 6788889988777655445 8999998888776553
No 406
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.52 E-value=0.13 Score=53.68 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=83.9
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-..++++| +++++++-..++.|+++|. +++....+... -.....++++|+ +.++++-+..+.|+.
T Consensus 187 v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------------~~~v~~v~~~p~-~~~l~s~s~d~~v~i 252 (340)
T 1got_B 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGH------------ESDINAICFFPN-GNAFATGSDDATCRL 252 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCC------------SSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------cCCEEEEEEcCC-CCEEEEEcCCCcEEE
Confidence 35788886 5667777778899999997 66666555221 123577899984 555566667789999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|+..+......... + .......++++++|.++++-..++.|++||..
T Consensus 253 wd~~~~~~~~~~~~~-----------------~---------------~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 253 FDLRADQELMTYSHD-----------------N---------------IICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EETTTTEEEEEECCT-----------------T---------------CCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EECCCCcEEEEEccC-----------------C---------------cccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 998776533222110 0 01135678999999999998899999999988
Q ss_pred CCcEEEEEcC
Q 004302 426 SGEIKEAVKG 435 (762)
Q Consensus 426 ~g~I~ti~~G 435 (762)
++.....+.|
T Consensus 301 ~~~~~~~~~~ 310 (340)
T 1got_B 301 KADRAGVLAG 310 (340)
T ss_dssp TCCEEEEEEC
T ss_pred cCcEeeEeec
Confidence 7764433333
No 407
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=96.50 E-value=0.0026 Score=51.85 Aligned_cols=46 Identities=9% Similarity=-0.101 Sum_probs=30.4
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI 176 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i 176 (762)
++-||++||++| ++..+.|+++ ++.+.-++++. +. ...++++++++
T Consensus 3 i~~y~~~~C~~C-------~~~~~~l~~~-----~i~~~~~di~~------~~-~~~~~~~~~~~ 48 (75)
T 1r7h_A 3 ITLYTKPACVQC-------TATKKALDRA-----GLAYNTVDISL------DD-EARDYVMALGY 48 (75)
T ss_dssp EEEEECTTCHHH-------HHHHHHHHHT-----TCCCEEEETTT------CH-HHHHHHHHTTC
T ss_pred EEEEeCCCChHH-------HHHHHHHHHc-----CCCcEEEECCC------CH-HHHHHHHHcCC
Confidence 566999999876 9999988876 45555566664 22 34445555543
No 408
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.46 Score=54.86 Aligned_cols=113 Identities=6% Similarity=0.003 Sum_probs=79.2
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
...+|+++|.+..|+++. .++.|+++|. +|+.+..+.... .....+++++++..|.++.. ++.|+
T Consensus 15 ~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~-dg~i~ 80 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTE------------TPVRAGKFIARKNWIIVGSD-DFRIR 80 (814)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCS------------SCEEEEEEEGGGTEEEEEET-TSEEE
T ss_pred ceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCC------------CcEEEEEEeCCCCEEEEEeC-CCeEE
Confidence 457899998666666665 5789999996 677666553211 22578999986666666654 78999
Q ss_pred EEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
++|..++. +.++.+.. ...+.++++++|..+++-..++.|++||
T Consensus 81 vw~~~~~~~~~~~~~~~-----------------------------------~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHP-----------------------------------DYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EEETTTCCEEEEEECCS-----------------------------------SCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEECCCCcEEEEEecCC-----------------------------------CCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 99987653 44442211 1367889999987666666788999999
Q ss_pred CCCC
Q 004302 424 LASG 427 (762)
Q Consensus 424 ~~~g 427 (762)
..++
T Consensus 126 ~~~~ 129 (814)
T 3mkq_A 126 WENN 129 (814)
T ss_dssp GGGT
T ss_pred CCCC
Confidence 8765
No 409
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.052 Score=56.94 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=81.8
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC---
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH--- 341 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh--- 341 (762)
...++++++.++.++++-..++.|+++|. +++.+..+...... ...-.....+++++++..++++-+.++
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------SGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------SCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------cccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 45788999765777777777889999998 56666555331000 001234688999986555666555555
Q ss_pred eEEEEeCCCCE--EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCE
Q 004302 342 AIRRADMGRRV--LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFET 418 (762)
Q Consensus 342 rIRkid~~~g~--I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~r 418 (762)
.|+.+|..++. +.++. ...-...+.+++++ ++.++++-..+++
T Consensus 241 ~i~~~d~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLN----------------------------------QGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp CCCEEETTSTTSCSBCCC----------------------------------SCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred eEEEEeCCCCCCCcEEee----------------------------------cCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 89999976431 11110 00012467899988 7888888878899
Q ss_pred EEEEECCCCcEE
Q 004302 419 LWIMDLASGEIK 430 (762)
Q Consensus 419 I~v~d~~~g~I~ 430 (762)
|++||..++...
T Consensus 287 v~~wd~~~~~~~ 298 (416)
T 2pm9_A 287 VLLWNPESAEQL 298 (416)
T ss_dssp EEEECSSSCCEE
T ss_pred EEEeeCCCCccc
Confidence 999999877643
No 410
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.47 E-value=0.28 Score=49.72 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=77.2
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-..+++++.+. ++++=...+.|++++. +|+....+... -..-..+++++++ .++++-+.++.|+.
T Consensus 26 v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~h------------~~~v~~~~~~~~~-~~l~s~~~d~~i~v 91 (312)
T 4ery_A 26 VSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGH------------KLGISDVAWSSDS-NLLVSASDDKTLKI 91 (312)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCC------------SSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred EEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchhhccC------------CCceEEEEEcCCC-CEEEEECCCCEEEE
Confidence 46788997544 4444456778999987 67776655321 1124678999854 44555556788999
Q ss_pred EeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 346 ADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 346 id~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
+|..++. +.++.+.. ..-..+++.+++.++++-..++.|++||.
T Consensus 92 wd~~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHS-----------------------------------NYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp EETTTCCEEEEEECCS-----------------------------------SCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EECCCCcEEEEEcCCC-----------------------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 9987654 44442211 12456888888888888888899999999
Q ss_pred CCCcEE
Q 004302 425 ASGEIK 430 (762)
Q Consensus 425 ~~g~I~ 430 (762)
.++...
T Consensus 137 ~~~~~~ 142 (312)
T 4ery_A 137 KTGKCL 142 (312)
T ss_dssp TTCCEE
T ss_pred CCCEEE
Confidence 887643
No 411
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=96.39 E-value=0.0097 Score=61.68 Aligned_cols=88 Identities=15% Similarity=0.016 Sum_probs=59.8
Q ss_pred CCCEEEEEEe--ccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCC---
Q 004302 107 GGAFLVLAGR--FVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISAVDQTRLVEMLMKEYIT--- 177 (762)
Q Consensus 107 rGK~VvLnFW--AtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it--- 177 (762)
.+++|||.|| |+|| - ..|.+++|.+.|+ ++.|.-|++++ +. ...-.+..++++|.
T Consensus 32 ~~~~vlV~Fy~~ApWC----------g-l~P~~e~lA~~~~~~~~~v~~akVD~d~-~g----~~~n~~la~~~~V~~~~ 95 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYG----------E-KHEAFTAFSKSAHKATKDLLIATVGVKD-YG----ELENKALGDRYKVDDKN 95 (248)
T ss_dssp TSSEEEEEEEESSCCS----------H-HHHHHHHHHHHHHHHCSSEEEEEEEECS-ST----TCTTHHHHHHTTCCTTS
T ss_pred cCCCEEEEEECCCCCC----------c-cHHHHHHHHHHHhccCCCeEEEEEECCc-cc----ccccHHHHHHhCCCcCC
Confidence 4689999999 9999 3 6889999998873 48888888663 10 00123456677765
Q ss_pred cceeeCCCCccccccCceEEEEcCCCCE--EEEe--cCCcCHHHHHHHHHHHHH
Q 004302 178 FPILLSNKNFPQMENGACYLLSKDFGNA--RVFH--ENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 178 fPVl~D~~~~~~~~ygv~t~lId~~G~i--v~~~--~G~~~~~~L~~~l~~ll~ 227 (762)
||.+ +++ + |+. .... .|..+.+.|.+.|.+.+.
T Consensus 96 ~PTl---------------~~F-~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~ 132 (248)
T 2c0g_A 96 FPSI---------------FLF-K-GNADEYVQLPSHVDVTLDNLKAFVSANTP 132 (248)
T ss_dssp CCEE---------------EEE-S-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred CCeE---------------EEE-e-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence 5532 233 3 663 3445 788898888888887654
No 412
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.069 Score=57.91 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCC---CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGN---GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~---G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
....++++++.+..|+++-..++.|++++.. |+.+..+-.. ..-..+..++++|++..|++++. .+
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~~~l~~~~~-~g 171 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF----------CFSKRPNAISIAEDDTTVIIADK-FG 171 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE----------ECSSCEEEEEECTTSSEEEEEET-TS
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc----------cCCCCceEEEEcCCCCEEEEEeC-CC
Confidence 3567899998777766666667888888754 5555444210 01134788999997778888865 67
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC---CcEEEEECCCCE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED---DNLLIINRSFET 418 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d---G~LYVAD~gN~r 418 (762)
.|+.++..++..... . -. -+ ...-...+.|+++++ +.++++-...+.
T Consensus 172 ~v~~~~~~~~~~~~~---~-----~~----------~~------------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 172 DVYSIDINSIPEEKF---T-----QE----------PI------------LGHVSMLTDVHLIKDSDGHQFIITSDRDEH 221 (450)
T ss_dssp EEEEEETTSCCCSSC---C-----CC----------CS------------EECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred cEEEEecCCcccccc---c-----ce----------ee------------ecccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence 788888754321100 0 00 00 001124678999998 877776667889
Q ss_pred EEEEECCCCcE
Q 004302 419 LWIMDLASGEI 429 (762)
Q Consensus 419 I~v~d~~~g~I 429 (762)
|++||..++..
T Consensus 222 i~vwd~~~~~~ 232 (450)
T 2vdu_B 222 IKISHYPQCFI 232 (450)
T ss_dssp EEEEEESCTTC
T ss_pred EEEEECCCCce
Confidence 99999877653
No 413
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.37 E-value=0.022 Score=60.40 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=78.2
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
..+|++++.++.++++-..++.|+++|. +++....+-.. ..-..+..++++|+++.++++-+.++.|+.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~----------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC----------ASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT----------TCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec----------cccccccchhhhhcccceEEEeecccceeE
Confidence 4568888766678888788889999987 44433222110 011236788998877777777667788999
Q ss_pred EeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEEEEEE
Q 004302 346 ADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLWIMD 423 (762)
Q Consensus 346 id~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI~v~d 423 (762)
+|..++. +.++.+. -..-+.|+++++| .++++=...+.|++||
T Consensus 254 wd~~~~~~~~~~~~~-----------------------------------~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 254 VNIKNPDSAQTSAVH-----------------------------------SQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp EESSCGGGCEEECCC-----------------------------------SSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred EECCCCcEeEEEecc-----------------------------------ceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 9986542 2333211 0124678888876 4555555678999999
Q ss_pred CCCCcEEE
Q 004302 424 LASGEIKE 431 (762)
Q Consensus 424 ~~~g~I~t 431 (762)
.+++++..
T Consensus 299 ~~~~~~~~ 306 (357)
T 4g56_B 299 ADFSEVFR 306 (357)
T ss_dssp TTSCEEEE
T ss_pred CCCCcEeE
Confidence 98886543
No 414
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.36 E-value=0.18 Score=53.56 Aligned_cols=118 Identities=9% Similarity=-0.043 Sum_probs=79.4
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CCCe
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--ENHA 342 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~Nhr 342 (762)
...++++++ ++.++++-..++.|+++|. +++.+..+... -.....+++++++..++++-. .++.
T Consensus 219 ~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 219 EVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNH------------NAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCC------------SSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred CeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCC------------cceEEEEEECCCCCCEEEEecCCCCCE
Confidence 346788887 4555555556788999998 45655544221 123578999987778888754 6889
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE--ECCCCEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII--NRSFETLW 420 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA--D~gN~rI~ 420 (762)
|+.+|..++........+ .....++++++|..+++ -..++.|+
T Consensus 286 i~i~d~~~~~~~~~~~~~-----------------------------------~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAG-----------------------------------SQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp EEEEETTTCCEEEEEECS-----------------------------------SCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEEEECCCCCEEEEEeCC-----------------------------------CcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 999998766443332211 02567899988887777 34688999
Q ss_pred EEECCCCcEEE
Q 004302 421 IMDLASGEIKE 431 (762)
Q Consensus 421 v~d~~~g~I~t 431 (762)
+|+..++....
T Consensus 331 v~~~~~~~~~~ 341 (401)
T 4aez_A 331 IWSYSSSGLTK 341 (401)
T ss_dssp EEEEETTEEEE
T ss_pred EEecCCcccee
Confidence 99987765443
No 415
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.37 Score=48.94 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=73.9
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC----CC
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE----NH 341 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~----Nh 341 (762)
-.++++++. ++.+++-..++.|+++|. +++.+..+... .....+++++++..|+++... .+
T Consensus 77 v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 77 IWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWKSP-------------VPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp EEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECS-------------SCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred EEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEeecC-------------CCeEEEEEccCCCEEEEecCCccCCCC
Confidence 467888874 444455456789999997 57776665421 236789999866655555432 27
Q ss_pred eEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~ 420 (762)
.|+.+|...+.. ..+.... ...- .. ............++++++|.++++-..++.|+
T Consensus 143 ~i~~~d~~~~~~~~~~~~~~--~~~~-----------~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 200 (369)
T 3zwl_B 143 SINIYEIERDSATHELTKVS--EEPI-----------HK---------IITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200 (369)
T ss_dssp EEEEEEEEECTTTCCEEEEC--SSCS-----------EE---------EECCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred EEEEEEecCCccceeecccc--ccee-----------ee---------ccCCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence 899888643210 0000000 0000 00 00001123678899999988777777789999
Q ss_pred EEECCC
Q 004302 421 IMDLAS 426 (762)
Q Consensus 421 v~d~~~ 426 (762)
+||..+
T Consensus 201 i~d~~~ 206 (369)
T 3zwl_B 201 KYDVSN 206 (369)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999987
No 416
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.26 E-value=0.56 Score=48.75 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=47.0
Q ss_pred EEEccCCCEEE-EEe-CCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 270 ISADESGNRLF-LSD-SNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 270 IAVD~s~g~LY-VAD-s~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
.+++|.+..|+ .++ .++.+|+++|.++.-...+-.+.+ ....+.+++|++..|+++.. +..|+++|
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~-----------~~~~~~~~spdg~~l~~~~~-~~~l~~~d 108 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG-----------DNTFGGFLSPDDDALFYVKD-GRNLMRVD 108 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC-----------BCSSSCEECTTSSEEEEEET-TTEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC-----------CCccceEEcCCCCEEEEEeC-CCeEEEEE
Confidence 35677666554 555 455689999985433333322111 01124578887788888874 46899999
Q ss_pred CCCCEEEEEe
Q 004302 348 MGRRVLETVY 357 (762)
Q Consensus 348 ~~~g~I~Tia 357 (762)
+.++....+.
T Consensus 109 ~~~g~~~~~~ 118 (388)
T 3pe7_A 109 LATLEENVVY 118 (388)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCcceeee
Confidence 9888766554
No 417
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.26 E-value=0.12 Score=55.80 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=77.9
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCCC-----cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGNG-----KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-----~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
...+|++++.+..++++-...+.|.+++.+. ..+.....-.+ .-.....+++++.++.++++...+
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---------HTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC---------CSSCEEEEEECSSCTTEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC---------CCCCEeeeEEeCCCCCEEEEEeCC
Confidence 4578999876554666667788899998743 11110000001 112367889988678899898899
Q ss_pred CeEEEEeCCCC----EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECC
Q 004302 341 HAIRRADMGRR----VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRS 415 (762)
Q Consensus 341 hrIRkid~~~g----~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~g 415 (762)
+.|+.+|...+ .+.++.+. -..+..|++.+++. ++++-..
T Consensus 254 g~i~i~d~~~~~~~~~~~~~~~~-----------------------------------~~~v~~i~~~p~~~~~l~tg~~ 298 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTVDAH-----------------------------------TAEVNCLSFNPYSEFILATGSA 298 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEEECC-----------------------------------SSCEEEEEECSSCTTEEEEEET
T ss_pred CeEEEEECCCCCCCcceeEeecC-----------------------------------CCCeEEEEeCCCCCCEEEEEeC
Confidence 99999998654 12222100 12477899998865 8888888
Q ss_pred CCEEEEEECCC
Q 004302 416 FETLWIMDLAS 426 (762)
Q Consensus 416 N~rI~v~d~~~ 426 (762)
++.|++||..+
T Consensus 299 dg~v~vwd~~~ 309 (430)
T 2xyi_A 299 DKTVALWDLRN 309 (430)
T ss_dssp TSEEEEEETTC
T ss_pred CCeEEEEeCCC
Confidence 89999999876
No 418
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.22 E-value=0.31 Score=51.58 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=81.1
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
++..+.++..+++=+..+.|+++|. +|+.+..++.. .+. -..-..+++++.++.++++-+..+.|+.+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH---------TADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC---------CSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC---------ccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 3444444555666677889999997 67777777542 111 12245677765567788888888999999
Q ss_pred eCCC--CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 347 DMGR--RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~--g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
|+.. ..+.++.|.. .....|++.++|..+++=...+.|++||.
T Consensus 234 d~~~~~~~~~~~~~h~-----------------------------------~~v~~v~~~p~~~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 234 DLRITSRAVRTYHGHE-----------------------------------GDINSVKFFPDGQRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp ETTTTCCCCEEECCCS-----------------------------------SCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred ECCCCCcceEEECCcC-----------------------------------CCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence 9752 3344443221 12457999999999999889999999999
Q ss_pred CCCcEEEE
Q 004302 425 ASGEIKEA 432 (762)
Q Consensus 425 ~~g~I~ti 432 (762)
.++.....
T Consensus 279 ~~~~~~~~ 286 (380)
T 3iz6_a 279 RTGHQLQV 286 (380)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 88765443
No 419
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=96.22 E-value=0.0044 Score=51.56 Aligned_cols=33 Identities=6% Similarity=-0.163 Sum_probs=25.3
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
|+.||++||++| ++..|.|+++ ++.+.-++++.
T Consensus 3 v~~f~~~~C~~C-------~~~~~~l~~~-----~i~~~~vdi~~ 35 (81)
T 1h75_A 3 ITIYTRNDCVQC-------HATKRAMENR-----GFDFEMINVDR 35 (81)
T ss_dssp EEEEECTTCHHH-------HHHHHHHHHT-----TCCCEEEETTT
T ss_pred EEEEcCCCChhH-------HHHHHHHHHC-----CCCeEEEECCC
Confidence 567999999876 9998888865 45556677764
No 420
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.12 Score=53.75 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=74.4
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
...+++++.+. ++++-..++.|+++|. +++.+..+-. .-.....+++++ ++ ++++-+.++.|+.
T Consensus 250 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~i~~~~~~~-~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 250 ISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYG------------HSQSIVSASWVG-DD-KVISCSMDGSVRL 314 (425)
T ss_dssp EEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEEECC------------CSSCEEEEEEET-TT-EEEEEETTSEEEE
T ss_pred eEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceEecC------------CCccEEEEEECC-CC-EEEEEeCCCcEEE
Confidence 35678886444 4444456778888886 4444443311 112357889987 44 5666667889999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|..++......... -.....++++++|.++++-..++.|++||..
T Consensus 315 ~d~~~~~~~~~~~~~----------------------------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 315 WSLKQNTLLALSIVD----------------------------------GVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EETTTTEEEEEEECT----------------------------------TCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EECCCCcEeEecccC----------------------------------CccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 998776544332110 0136688999999888888888999999987
Q ss_pred CCc
Q 004302 426 SGE 428 (762)
Q Consensus 426 ~g~ 428 (762)
++.
T Consensus 361 ~~~ 363 (425)
T 1r5m_A 361 KLN 363 (425)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 421
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.18 E-value=0.12 Score=52.55 Aligned_cols=107 Identities=7% Similarity=0.078 Sum_probs=73.3
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
...+++| .++.|||+. +.|.++|.+|+.......+ -.....+++++ ++.|||+.. ++.|.++
T Consensus 179 ~~~~~~d-~~g~l~v~t---~~l~~~d~~g~~~~~~~~~------------~~~~~~~~~~~-~g~l~v~t~-~~gl~~~ 240 (330)
T 3hxj_A 179 TSAASIG-KDGTIYFGS---DKVYAINPDGTEKWNFYAG------------YWTVTRPAISE-DGTIYVTSL-DGHLYAI 240 (330)
T ss_dssp CSCCEEC-TTCCEEEES---SSEEEECTTSCEEEEECCS------------SCCCSCCEECT-TSCEEEEET-TTEEEEE
T ss_pred eeeeEEc-CCCEEEEEe---CEEEEECCCCcEEEEEccC------------CcceeceEECC-CCeEEEEcC-CCeEEEE
Confidence 3456777 478899998 7899999888776554321 13466788885 679999975 5678888
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
+.++..+..+. .+ + ..+..++++.+|+|||+.. ++.|.++|. +
T Consensus 241 ~~~g~~~~~~~-~~-----~-----------------------------~~~~~~~~~~~g~l~v~t~-~ggl~~~d~-~ 283 (330)
T 3hxj_A 241 NPDGTEKWRFK-TG-----K-----------------------------RIESSPVIGNTDTIYFGSY-DGHLYAINP-D 283 (330)
T ss_dssp CTTSCEEEEEE-CS-----S-----------------------------CCCSCCEECTTSCEEEECT-TCEEEEECT-T
T ss_pred CCCCCEeEEee-CC-----C-----------------------------CccccceEcCCCeEEEecC-CCCEEEECC-C
Confidence 87666665442 11 0 0123466777899999875 458999997 4
Q ss_pred Cc
Q 004302 427 GE 428 (762)
Q Consensus 427 g~ 428 (762)
|.
T Consensus 284 g~ 285 (330)
T 3hxj_A 284 GT 285 (330)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 422
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.18 E-value=0.32 Score=49.88 Aligned_cols=116 Identities=6% Similarity=0.047 Sum_probs=73.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-Cc--EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-GK--ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~--i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
-..+++++. ++++++-..++.|+++|.+ ++ .+..+... -.....+++++++..|+++. .++.|
T Consensus 11 i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~l~~~~-~dg~i 76 (372)
T 1k8k_C 11 ISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEH------------NGQVTGVDWAPDSNRIVTCG-TDRNA 76 (372)
T ss_dssp CCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECC------------SSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred eEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC------------CCcccEEEEeCCCCEEEEEc-CCCeE
Confidence 367888875 4444444567899999984 43 44444211 12357899998655555554 56789
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
+.+|..++......-.. +. -.....++++++|.++++-..++.|++||
T Consensus 77 ~vwd~~~~~~~~~~~~~-----------------~~---------------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVIL-----------------RI---------------NRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEEEEETTEEEEEEECC-----------------CC---------------SSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred EEEECCCCeeeeeEEee-----------------cC---------------CCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99998777533321110 00 11367889998887777766788898888
Q ss_pred CCCCc
Q 004302 424 LASGE 428 (762)
Q Consensus 424 ~~~g~ 428 (762)
..++.
T Consensus 125 ~~~~~ 129 (372)
T 1k8k_C 125 FEQEN 129 (372)
T ss_dssp EETTT
T ss_pred ecCCC
Confidence 76654
No 423
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.18 E-value=0.53 Score=49.78 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=83.3
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
-..+++++.+++++++=+..+.|+++|.. ++.+..+-. . -..-..++++| ++..+++-+..+.|+
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h---------~~~v~~v~~~p-~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG---H---------EGDINSVKFFP-DGQRFGTGSDDGTCR 274 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---C---------SSCCCEEEECT-TSSEEEEECSSSCEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---c---------CCCeEEEEEec-CCCeEEEEcCCCeEE
Confidence 35567766577888888888999999873 343333321 1 12246789998 566677777888999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.+|+.++......... ... ....+...+.++++++|.++++-..++.|++||.
T Consensus 275 lwd~~~~~~~~~~~~~-~~~--------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 275 LFDMRTGHQLQVYNRE-PDR--------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEETTTTEEEEEECCC-CSS--------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred EEECCCCcEEEEeccc-ccc--------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 9999877544332211 000 0011334678999999999999999999999998
Q ss_pred CCCcE
Q 004302 425 ASGEI 429 (762)
Q Consensus 425 ~~g~I 429 (762)
.++..
T Consensus 328 ~~~~~ 332 (380)
T 3iz6_a 328 LLAEM 332 (380)
T ss_dssp TTCCE
T ss_pred CCCce
Confidence 77654
No 424
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=96.13 E-value=0.057 Score=60.68 Aligned_cols=150 Identities=9% Similarity=0.060 Sum_probs=86.7
Q ss_pred EEEccCCCEEEEEeC----CCcEEEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCe-EEEEeCCCCe
Q 004302 270 ISADESGNRLFLSDS----NHHRIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDC-LYIVDSENHA 342 (762)
Q Consensus 270 IAVD~s~g~LYVADs----~nhrI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~-LYVADt~Nhr 342 (762)
++.+|. ..+|.++. ...+|+.++. +|... .+.... .....+++++++. +|++...+ .
T Consensus 70 ~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-------------~~~~~~~s~dg~~~~~~s~~~~-~ 133 (582)
T 3o4h_A 70 PHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-------------PMRILSGVDTGEAVVFTGATED-R 133 (582)
T ss_dssp ECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-------------SBEEEEEEECSSCEEEEEECSS-C
T ss_pred ccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-------------CceeeeeCCCCCeEEEEecCCC-C
Confidence 444543 56677775 3447777877 66544 221111 1223456665554 45555444 4
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE---ECCC-CE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII---NRSF-ET 418 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA---D~gN-~r 418 (762)
+..+|+.++....+.... .+.+++++||...+. |.++ ..
T Consensus 134 ~~l~d~~~g~~~~l~~~~-------------------------------------~~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP-------------------------------------GFGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp EEEEEEETTEEEEEEEES-------------------------------------SCEEEEEEETTEEEEEEEEETTEEE
T ss_pred ceEEEccCCcEEEeecCC-------------------------------------CceEEECCCCCEEEEEEEcCCCCeE
Confidence 457888888777664221 056888889876552 3333 67
Q ss_pred EEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC
Q 004302 419 LWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 498 (762)
Q Consensus 419 I~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N 498 (762)
|+++|.+++.+.++ .+... . . ...++++++..|+.++..+
T Consensus 177 i~~~d~~~g~~~~l-~~~~~------~--------------------------~-------~~~~~SpDG~~l~~~~~~~ 216 (582)
T 3o4h_A 177 LFTSNLSSGGLRVF-DSGEG------S--------------------------F-------SSASISPGMKVTAGLETAR 216 (582)
T ss_dssp EEEEETTTCCCEEE-CCSSC------E--------------------------E-------EEEEECTTSCEEEEEECSS
T ss_pred EEEEcCCCCCceEe-ecCCC------c--------------------------c-------ccceECCCCCEEEEccCCC
Confidence 99999988887665 22210 0 0 1133445555677666544
Q ss_pred -CEEEEEECCCCcEE
Q 004302 499 -QRIMRLNRESGVCS 512 (762)
Q Consensus 499 -hRIrkidl~~~~~s 512 (762)
.+|.++|++++...
T Consensus 217 ~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEEEECTTTCCEE
T ss_pred eeEEEEEcCCCCcEE
Confidence 37888888888776
No 425
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=96.12 E-value=0.0067 Score=58.71 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=35.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHH-HHHHHHCCC-eEEEEEEcC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV-KSIQQSFPQ-LQVIGFLHG 155 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L-~~L~~~y~~-v~VvgV~~~ 155 (762)
.+++++|.||..+||. | ....|.| .+|.++|++ +++.-+..+
T Consensus 16 ~~~~~~ief~d~~CP~-----C--~~~~~~l~~~l~~~~~~~v~~~~~~l~ 59 (195)
T 3c7m_A 16 NADKTLIKVFSYACPF-----C--YKYDKAVTGPVSEKVKDIVAFTPFHLE 59 (195)
T ss_dssp SCTTEEEEEECTTCHH-----H--HHHHHHTHHHHHHHTTTTCEEEEEECT
T ss_pred CCCcEEEEEEeCcCcc-----h--hhCcHHHHHHHHHhCCCceEEEEEecC
Confidence 4788999999999975 5 9999999 999999987 888877765
No 426
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.10 E-value=0.77 Score=47.58 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=76.4
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..++..+ ++.+ ++-+..+.|+++|. +|+.+..+-... .....++++| ++.++++-+.++.|+.+
T Consensus 147 ~~~~~~~-~~~l-~s~s~d~~i~~wd~~~~~~~~~~~~h~------------~~v~~~~~~~-~~~~l~sg~~d~~v~~w 211 (340)
T 1got_B 147 SCCRFLD-DNQI-VTSSGDTTCALWDIETGQQTTTFTGHT------------GDVMSLSLAP-DTRLFVSGACDASAKLW 211 (340)
T ss_dssp EEEEEEE-TTEE-EEEETTSCEEEEETTTTEEEEEECCCS------------SCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred EEEEECC-CCcE-EEEECCCcEEEEECCCCcEEEEEcCCC------------CceEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 3455553 4554 44456788999997 566665552211 1246788987 56677777778899999
Q ss_pred eCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
|..++ .+.++.+.. .....|+++++|.++++-...+.|++||..
T Consensus 212 d~~~~~~~~~~~~h~-----------------------------------~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 212 DVREGMCRQTFTGHE-----------------------------------SDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp ETTTCSEEEEECCCS-----------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ECCCCeeEEEEcCCc-----------------------------------CCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 98765 344442211 135689999999988888889999999998
Q ss_pred CCcE
Q 004302 426 SGEI 429 (762)
Q Consensus 426 ~g~I 429 (762)
++..
T Consensus 257 ~~~~ 260 (340)
T 1got_B 257 ADQE 260 (340)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7653
No 427
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=96.10 E-value=0.056 Score=62.69 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=68.1
Q ss_pred cccCCcceEEEecCCCeEEEEeCCCC---------------------eEEEEeCCCC-------EEEEEeecCCCCCCCC
Q 004302 316 SKLMRPAASFYHKDDDCLYIVDSENH---------------------AIRRADMGRR-------VLETVYPTSGISKKNN 367 (762)
Q Consensus 316 a~fn~P~GIavd~~~g~LYVADt~Nh---------------------rIRkid~~~g-------~I~TiaG~G~~~~~G~ 367 (762)
..|.+|.+|++++.++.+||+-+.|. .|.+++...+ ....++-.|.+.....
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 57999999999988899999988653 4666654322 1111111111111000
Q ss_pred chhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEEC------------CCCEEEEEECCCCcEEEEEcC
Q 004302 368 SLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINR------------SFETLWIMDLASGEIKEAVKG 435 (762)
Q Consensus 368 ~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~------------gN~rI~v~d~~~g~I~ti~~G 435 (762)
. ...+. ........|+.|-+|++++.|+|||+.= +|+.++.+++.+|++.+++.+
T Consensus 461 ~------~~~~~-------~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~ 527 (592)
T 3zwu_A 461 T------PKGGS-------SNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG 527 (592)
T ss_dssp S------GGGCC-------TTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC
T ss_pred c------ccccc-------cccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC
Confidence 0 00000 0111234599999999999999999843 578999999999998887543
No 428
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.09 E-value=0.17 Score=54.34 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=81.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
....|+++| ++.++++=+..+.|+++|. +|+....+-. . -..-..+++++ ++.++++-+..+.|+
T Consensus 110 ~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~---h---------~~~V~~v~~~~-~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 110 PVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKG---H---------TDSVQDISFDH-SGKLLASCSADMTIK 175 (410)
T ss_dssp CEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECC---C---------SSCEEEEEECT-TSSEEEEEETTSCCC
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEec---c---------CCcEEEEEEcC-CCCEEEEEeCCCeEE
Confidence 346788887 4556666667889999997 5666555422 1 11246788987 455666666778899
Q ss_pred EEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.+|..++. +.++.|.. ..-..+++.++|..+++-...+.|++||
T Consensus 176 iwd~~~~~~~~~~~~h~-----------------------------------~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHD-----------------------------------HNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp EEETTSSCEEECCCCCS-----------------------------------SCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEeCCCCceeEEEcCCC-----------------------------------CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99987653 33332110 1256788999998888888899999999
Q ss_pred CCCCcEEEEEc
Q 004302 424 LASGEIKEAVK 434 (762)
Q Consensus 424 ~~~g~I~ti~~ 434 (762)
..++.....+.
T Consensus 221 ~~~~~~~~~~~ 231 (410)
T 1vyh_C 221 VQTGYCVKTFT 231 (410)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCcEEEEEe
Confidence 98876443333
No 429
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.04 E-value=0.13 Score=58.83 Aligned_cols=110 Identities=14% Similarity=0.009 Sum_probs=65.1
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
..+..++++|+ +.++++- +..|+++|.+ |+........ ..+..++++|++..|+++. ++.|
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~l~~~~-------------~~~~~~~~SpdG~~la~~~--~~~i 143 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTYLFDTN-------------EETASLDFSPVGDRVAYVR--NHNL 143 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEEEECCT-------------TCCTTCEECTTSSEEEEEE--TTEE
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEEccCCc-------------ccccCCcCCCCCCEEEEEE--CCeE
Confidence 45678999986 7776663 3899999985 5544443221 1245578888776776653 4779
Q ss_pred EEEeCCC-----CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEE
Q 004302 344 RRADMGR-----RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLII 412 (762)
Q Consensus 344 Rkid~~~-----g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVA 412 (762)
+++++.+ +....+...+... . ..|.. ..+..+..+.++++++||. |+++
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~-~----------~~g~~---------~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTET-L----------VYGQA---------VHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTT-E----------EESSC---------CGGGCTTCCCSEEECTTSSEEEEE
T ss_pred EEEecCcccccCCCcEEeccCCCCC-e----------Ecccc---------hhhhhcCCCceEEECCCCCEEEEE
Confidence 9999876 5544432211000 0 00110 1123366789999999986 4444
No 430
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.02 E-value=0.85 Score=47.81 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=74.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecC-CCeEEEEeCCCCeEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD-DDCLYIVDSENHAIR 344 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~-~g~LYVADt~NhrIR 344 (762)
-..+++++.+.. +++-+..+.|+++|. +|+.+..+-... .....+++.+. ++.++++-+.++.|+
T Consensus 157 v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~------------~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 157 LSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHG------------ADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp EEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCS------------SCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred EEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCC------------CCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 356777764444 445556889999997 677766552210 11345666553 345556556678999
Q ss_pred EEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.+|+.++. +.++.+.. ..-..+++.++|.++++=...+.|++||
T Consensus 224 ~wd~~~~~~~~~~~~h~-----------------------------------~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 224 VWDMRSGQCVQAFETHE-----------------------------------SDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEETTTCCEEEEECCCS-----------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEECCCCcEEEEecCCC-----------------------------------CCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99987654 33432210 1245788999998888888889999999
Q ss_pred CCCCcE
Q 004302 424 LASGEI 429 (762)
Q Consensus 424 ~~~g~I 429 (762)
..++..
T Consensus 269 ~~~~~~ 274 (354)
T 2pbi_B 269 LRADRE 274 (354)
T ss_dssp TTTTEE
T ss_pred CCCCcE
Confidence 987653
No 431
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.01 E-value=1 Score=48.24 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=49.2
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-.+++++|. ++.+++=+.++.|+++|. +|..+..+-... ..-..+++++ ++.++++-+..+.|+.
T Consensus 195 V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~------------~~v~~~~~~~-~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 195 VSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHR------------EWVRMVRPNQ-DGTLIASCSNDQTVRV 260 (410)
T ss_dssp EEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCS------------SCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred EEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC------------ccEEEEEECC-CCCEEEEEcCCCeEEE
Confidence 456888874 455556567889999997 677665553211 1234577776 4556666666788999
Q ss_pred EeCCCCE-EEEE
Q 004302 346 ADMGRRV-LETV 356 (762)
Q Consensus 346 id~~~g~-I~Ti 356 (762)
+|..++. +.++
T Consensus 261 wd~~~~~~~~~~ 272 (410)
T 1vyh_C 261 WVVATKECKAEL 272 (410)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCceeeEe
Confidence 9987654 3344
No 432
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.00 E-value=0.3 Score=53.93 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=71.5
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|..+++++ ++.++++. ..+.|.+++. +|+.+..+.. -..+..++++ +..|+++...++.|+
T Consensus 408 ~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 408 QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVRL-------------NSPGSAVSLS--QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEEC-------------SSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeeccc-------------CCCceEEEEc--CCEEEEeecCCCeEE
Confidence 344555553 33343333 4555555554 4554444321 1346788886 567777665477899
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.+|..++.+... .- .+ .-.....++++++|.++++-..++.|++||.
T Consensus 471 ~~~~~~~~~~~~--~~----~~---------------------------~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 517 (615)
T 1pgu_A 471 VFKLSDLEVSFD--LK----TP---------------------------LRAKPSYISISPSETYIAAGDVMGKILLYDL 517 (615)
T ss_dssp EEETTEEEEEEE--CS----SC---------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECCCcccccc--cc----CC---------------------------ccCceEEEEECCCCCEEEEcCCCCeEEEeeC
Confidence 999877655321 10 00 0124678999999988888888899999999
Q ss_pred CCCcEE
Q 004302 425 ASGEIK 430 (762)
Q Consensus 425 ~~g~I~ 430 (762)
.++...
T Consensus 518 ~~~~~~ 523 (615)
T 1pgu_A 518 QSREVK 523 (615)
T ss_dssp TTTEEE
T ss_pred CCCcce
Confidence 887653
No 433
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.15 Score=55.09 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=52.1
Q ss_pred CcceEEEecCCCeEEEEeCCCCeEEEEeCC--CC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 320 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 320 ~P~GIavd~~~g~LYVADt~NhrIRkid~~--~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
....+++++++..||++-..++.|+.+|.. ++ .+.++.+.+ . -.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------------~---------------~~ 150 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC------------------F---------------SK 150 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE------------------C---------------SS
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc------------------C---------------CC
Confidence 457899999777776777778899999976 43 444443211 0 01
Q ss_pred CcceEEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 397 FPWHLMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
.+.+|+++++|..+++-...+.|+.|+..++.
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 47789999987655554558889999987654
No 434
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.98 E-value=0.42 Score=51.44 Aligned_cols=122 Identities=9% Similarity=-0.006 Sum_probs=77.6
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCC-----------cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNG-----------KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCL 333 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-----------~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~L 333 (762)
..+..|++++.++.++++-+.++.|++++.+. +.+..+.. .-....+|++++.+..+
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG------------HQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC------------CSSCCCCEEECTTSTTE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC------------CCCCeEEEEeCCCCCCe
Confidence 45678999976567777777788898888642 22211111 11246889999855536
Q ss_pred EEEeCCCCeEEEEeCCCCEE--EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEE
Q 004302 334 YIVDSENHAIRRADMGRRVL--ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLL 410 (762)
Q Consensus 334 YVADt~NhrIRkid~~~g~I--~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LY 410 (762)
+++-...+.|+.+++..+.. ..+.... .. ...-...+.|++.+ ++.++
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~--------------~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKN---------------IF--------------TGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSE---------------EE--------------CCCSSCEEEEEECSSCTTEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccce---------------ee--------------cCCCCCEeeeEEeCCCCCEE
Confidence 66666788999999865210 0000000 00 00012467899988 68899
Q ss_pred EEECCCCEEEEEECCCC
Q 004302 411 IINRSFETLWIMDLASG 427 (762)
Q Consensus 411 VAD~gN~rI~v~d~~~g 427 (762)
++...++.|++||..++
T Consensus 248 ~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNN 264 (430)
T ss_dssp EEEETTSEEEEEETTCS
T ss_pred EEEeCCCeEEEEECCCC
Confidence 99999999999999765
No 435
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.97 E-value=0.91 Score=51.41 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=75.4
Q ss_pred CcceEEEccCCCEEEEEeCC-------CcEEEEEcCC--C---cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeE
Q 004302 266 FPGCISADESGNRLFLSDSN-------HHRIIVFDGN--G---KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCL 333 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~-------nhrI~v~d~~--G---~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~L 333 (762)
....++++|++..|+.+... ...|+++|.+ | +.....+.. -..+..+++++++. |
T Consensus 189 ~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~------------~~~~~~~~~spdg~-l 255 (662)
T 3azo_A 189 FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP------------EEAIAQAEWAPDGS-L 255 (662)
T ss_dssp EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET------------TBCEEEEEECTTSC-E
T ss_pred cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC------------CceEcceEECCCCe-E
Confidence 34567889877788755432 3689999875 4 444443210 12356788888655 5
Q ss_pred EEEeCCCC--eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEE
Q 004302 334 YIVDSENH--AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLI 411 (762)
Q Consensus 334 YVADt~Nh--rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYV 411 (762)
|++-..++ +|.++|..++.+..+.... ...+. . .. --....+++.++|.+|+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~-----------p------------~w-~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRRE--EEFAG-----------P------------LW-TPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCS--SBSSC-----------C------------CC-STTCCSEEECTTSCEEE
T ss_pred EEEECCCCCeEEEEEECCCCceeeccccc--ccccC-----------c------------cc-cccCceEeEeCCCEEEE
Confidence 55443334 8999998777666653211 00000 0 00 00134688877887766
Q ss_pred EEC-CCCEEEEEECCCCcEEEE
Q 004302 412 INR-SFETLWIMDLASGEIKEA 432 (762)
Q Consensus 412 AD~-gN~rI~v~d~~~g~I~ti 432 (762)
+-. +..+|+++|.+++.+.++
T Consensus 310 ~~~~~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 310 VHGKGAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEBSSSCEEEEEETTTTEEEEC
T ss_pred EEEcCccEEEEEECCCCcEEEe
Confidence 543 556788889888876654
No 436
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=95.96 E-value=0.0028 Score=55.52 Aligned_cols=34 Identities=12% Similarity=-0.133 Sum_probs=26.1
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEE
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGF 152 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV 152 (762)
|+-||++||++| ++..|.|+++..+|+++.++-|
T Consensus 14 v~~f~~~~C~~C-------~~~~~~L~~~~~~~~~~~~vdi 47 (105)
T 1kte_A 14 VVVFIKPTCPFC-------RKTQELLSQLPFKEGLLEFVDI 47 (105)
T ss_dssp EEEEECSSCHHH-------HHHHHHHHHSCBCTTSEEEEEG
T ss_pred EEEEEcCCCHhH-------HHHHHHHHHcCCCCCccEEEEc
Confidence 455999999876 9999999988777666555433
No 437
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=95.92 E-value=0.0099 Score=61.25 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=59.4
Q ss_pred CCCEEEEEEec--cCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCC---c
Q 004302 107 GGAFLVLAGRF--VDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVDQTRLVEMLMKEYIT---F 178 (762)
Q Consensus 107 rGK~VvLnFWA--tWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it---f 178 (762)
.+++|||.||| +|| . ..|.+.++.+.|. ++.|.-|++++ ...+ .-.+..++++|. |
T Consensus 21 ~~~~vlV~FyA~~pWC----------g-l~P~~e~lA~~~~~~~~v~~akVDvd~-~g~~----~~~~l~~~~~V~~~~~ 84 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYG----------E-KQDEFKRLAENSASSDDLLVAEVGISD-YGDK----LNMELSEKYKLDKESY 84 (240)
T ss_dssp GCSEEEEEECCSSCCS----------H-HHHHHHHHHHHHTTCTTEEEEEECCCC-SSSC----CSHHHHHHTTCCGGGC
T ss_pred CCCCEEEEEeCCCCCC----------c-chHHHHHHHHHhcCCCCeEEEEEeCCc-ccch----hhHHHHHHcCCCCCCC
Confidence 46899999999 999 4 7899999999985 38898888652 0000 123456677776 5
Q ss_pred ceeeCCCCccccccCceEEEEcCCCC--EEEEecCCcCHHHHHHHHHHHH
Q 004302 179 PILLSNKNFPQMENGACYLLSKDFGN--ARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv~t~lId~~G~--iv~~~~G~~~~~~L~~~l~~ll 226 (762)
|.+ ++=++|+ ......|..+.+.|.+.|.+..
T Consensus 85 PTl----------------~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 85 PVF----------------YLFRDGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp SEE----------------EEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred CEE----------------EEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 543 2224565 3445668888888888877653
No 438
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.89 E-value=1.6 Score=46.24 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=77.1
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..|++++. +..+++-..++.|+++|. +++.+..+.. . -..-..+++++++..| ++-+..+.|+.+
T Consensus 127 ~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---h---------~~~v~~~~~~p~~~~l-~s~s~d~~v~iw 192 (393)
T 1erj_A 127 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQG---H---------EQDIYSLDYFPSGDKL-VSGSGDRTVRIW 192 (393)
T ss_dssp EEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECC---C---------SSCEEEEEECTTSSEE-EEEETTSEEEEE
T ss_pred EEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcc---C---------CCCEEEEEEcCCCCEE-EEecCCCcEEEE
Confidence 46888874 445555556789999998 5666655532 1 1124678888855544 555567899999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~v~d~~ 425 (762)
|..++......... .....+++.+ +|.++++-...+.|++||..
T Consensus 193 d~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 193 DLRTGQCSLTLSIE-----------------------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp ETTTTEEEEEEECS-----------------------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred ECCCCeeEEEEEcC-----------------------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 99877654332110 0245678887 78888888888999999998
Q ss_pred CCcEE
Q 004302 426 SGEIK 430 (762)
Q Consensus 426 ~g~I~ 430 (762)
++...
T Consensus 238 ~~~~~ 242 (393)
T 1erj_A 238 TGFLV 242 (393)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 87643
No 439
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.86 E-value=1.2 Score=47.14 Aligned_cols=113 Identities=16% Similarity=0.086 Sum_probs=72.5
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
...|++++.+..|+++. .++.|+++|. +++.+..+-... ..-..++++ +. ++++-+.++.|+.
T Consensus 137 v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~~--~~-~l~~~~~dg~i~i 200 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGL-GNGLVDIYDVESQTKLRTMAGHQ------------ARVGCLSWN--RH-VLSSGSRSGAIHH 200 (401)
T ss_dssp EEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCCS------------SCEEEEEEE--TT-EEEEEETTSEEEE
T ss_pred EEEEEECCCCCEEEEEC-CCCeEEEEECcCCeEEEEecCCC------------CceEEEEEC--CC-EEEEEcCCCCEEE
Confidence 45788887545555544 5678999987 566666553211 123456664 34 4444456788999
Q ss_pred EeCC--CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 346 ADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 346 id~~--~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
+|.. ...+.++.+.. ....+++++++|.++++-...+.|++||
T Consensus 201 ~d~~~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHS-----------------------------------SEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp EETTSSSCEEEEEECCS-----------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EecccCcceeeEEcCCC-----------------------------------CCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 9986 23344443211 1356789999988888877889999999
Q ss_pred CCCCcEE
Q 004302 424 LASGEIK 430 (762)
Q Consensus 424 ~~~g~I~ 430 (762)
..++...
T Consensus 246 ~~~~~~~ 252 (401)
T 4aez_A 246 ARSSIPK 252 (401)
T ss_dssp TTCSSEE
T ss_pred CCCCCcc
Confidence 9876643
No 440
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.85 E-value=0.41 Score=56.23 Aligned_cols=167 Identities=8% Similarity=0.019 Sum_probs=105.2
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
....|+.| .+++|||+-. +-|.+++.. +++....... . . ....+....|+.|+ ++.|||+-.+++ |.
T Consensus 451 ~v~~i~~d-~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~-~---~---~~~~~~i~~i~~d~-~g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 451 DVRVFYED-KNKKIWIGTH--AGVFVIDLASKKVIHHYDTS-N---S---QLLENFVRSIAQDS-EGRFWIGTFGGG-VG 518 (781)
T ss_dssp CEEEEEEC-TTSEEEEEET--TEEEEEESSSSSCCEEECTT-T---S---SCSCSCEEEEEECT-TCCEEEEESSSC-EE
T ss_pred eEEEEEEC-CCCCEEEEEC--CceEEEeCCCCeEEecccCc-c---c---ccccceeEEEEEcC-CCCEEEEEcCCC-EE
Confidence 44677888 4789999875 578889874 4554433211 0 0 01125678899996 789999976444 88
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
++|..++.+..+... .++ .-+....|+.|++|.|||+.. ++-|.++|+
T Consensus 519 ~~~~~~~~~~~~~~~-----------------~~l--------------~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 519 IYTPDMQLVRKFNQY-----------------EGF--------------CSNTINQIYRSSKGQMWLATG-EGLVCFPSA 566 (781)
T ss_dssp EECTTCCEEEEECTT-----------------TTC--------------SCSCEEEEEECTTSCEEEEET-TEEEEESCT
T ss_pred EEeCCCCeEEEccCC-----------------CCC--------------CCCeeEEEEECCCCCEEEEEC-CCceEEECC
Confidence 899888877776311 011 023467899999999999986 444489998
Q ss_pred CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEE
Q 004302 425 ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRL 504 (762)
Q Consensus 425 ~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrki 504 (762)
.++.+..+-... +.|.......+...+|+||++- ++-|.++
T Consensus 567 ~~~~~~~~~~~~-------------------------------------gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~ 607 (781)
T 3v9f_A 567 RNFDYQVFQRKE-------------------------------------GLPNTHIRAISEDKNGNIWAST--NTGISCY 607 (781)
T ss_dssp TTCCCEEECGGG-------------------------------------TCSCCCCCEEEECSSSCEEEEC--SSCEEEE
T ss_pred CCCcEEEccccC-------------------------------------CCCCceEEEEEECCCCCEEEEc--CCceEEE
Confidence 877654431100 1111111122223567899985 3448889
Q ss_pred ECCCCcEEEEe
Q 004302 505 NRESGVCSNFQ 515 (762)
Q Consensus 505 dl~~~~~sti~ 515 (762)
+++++.+..+.
T Consensus 608 ~~~~~~~~~~~ 618 (781)
T 3v9f_A 608 ITSKKCFYTYD 618 (781)
T ss_dssp ETTTTEEEEEC
T ss_pred ECCCCceEEec
Confidence 99888777654
No 441
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.82 E-value=1.3 Score=44.93 Aligned_cols=116 Identities=10% Similarity=0.090 Sum_probs=78.8
Q ss_pred CcceEEEccCC--CEEEEEeCCCcEEEEEcCC--CcEE-EEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 266 FPGCISADESG--NRLFLSDSNHHRIIVFDGN--GKIL-DCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 266 ~P~gIAVD~s~--g~LYVADs~nhrI~v~d~~--G~i~-~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.-.+|++++.+ +.++++=..++.|+++|.. +... ..+.. .-.....+++++++..|+.+ +.+
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~s~-~~d 107 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM------------HTGPVLDVCWSDDGSKVFTA-SCD 107 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE------------CSSCEEEEEECTTSSEEEEE-ETT
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc------------ccCCEEEEEECcCCCEEEEE-cCC
Confidence 34678899754 5666666677889998874 5544 33321 11235678999855555555 457
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEE--cCCCcEEEEECCCCE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK--SEDDNLLIINRSFET 418 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIav--d~dG~LYVAD~gN~r 418 (762)
+.|+.+|..++.+..+.+.. ...+.+++ ++++.++++-..++.
T Consensus 108 g~v~iwd~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQHD-----------------------------------APVKTIHWIKAPNYSCVMTGSWDKT 152 (368)
T ss_dssp SEEEEEETTTTEEEEEEECS-----------------------------------SCEEEEEEEECSSCEEEEEEETTSE
T ss_pred CcEEEEEcCCCCceeecccc-----------------------------------CceEEEEEEeCCCCCEEEEccCCCc
Confidence 89999999988776664331 02456777 778887777777889
Q ss_pred EEEEECCCCcE
Q 004302 419 LWIMDLASGEI 429 (762)
Q Consensus 419 I~v~d~~~g~I 429 (762)
|++||..++..
T Consensus 153 i~vwd~~~~~~ 163 (368)
T 3mmy_A 153 LKFWDTRSSNP 163 (368)
T ss_dssp EEEECSSCSSC
T ss_pred EEEEECCCCcE
Confidence 99999877654
No 442
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.77 E-value=0.68 Score=51.03 Aligned_cols=120 Identities=18% Similarity=0.106 Sum_probs=79.8
Q ss_pred cceEEEccCCCEEEEEeCCC---cEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 267 PGCISADESGNRLFLSDSNH---HRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~n---hrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
...+++++.+..|+++.... ..|+++| .++.+..+-. . -.....+++++++..++++-+.++.|
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~---~---------~~~v~~~~~~~~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSG---H---------SQRINACHLKQSRPMRSMTVGDDGSV 185 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCS---C---------SSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeec---C---------CccEEEEEECCCCCcEEEEEeCCCcE
Confidence 46788888667777666543 6888888 5554444321 1 12356789998655466666778899
Q ss_pred EEEeCCCCEEE-EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEEEE
Q 004302 344 RRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETLWI 421 (762)
Q Consensus 344 Rkid~~~g~I~-TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI~v 421 (762)
+.+|...+... ++.+.. + .-...+.++++++ |.++++-..++.|++
T Consensus 186 ~vwd~~~~~~~~~~~~~~-----------------~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 186 VFYQGPPFKFSASDRTHH-----------------K---------------QGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp EEEETTTBEEEEEECSSS-----------------C---------------TTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred EEEeCCCcceeeeecccC-----------------C---------------CCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 99998776543 332110 0 0013568999999 888887778899999
Q ss_pred EECCCCcEEE
Q 004302 422 MDLASGEIKE 431 (762)
Q Consensus 422 ~d~~~g~I~t 431 (762)
||..++....
T Consensus 234 wd~~~~~~~~ 243 (615)
T 1pgu_A 234 FDGKSGEFLK 243 (615)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCCEeE
Confidence 9998776443
No 443
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.73 E-value=1.1 Score=47.10 Aligned_cols=151 Identities=10% Similarity=0.103 Sum_probs=86.7
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRV 352 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~ 352 (762)
++.+|+.. .++.|..+|. +|+++-....+ .+..+-.........| ++. ++.||++. .++.|..+|+.+|.
T Consensus 188 ~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p---~~~--~~~v~~~~-~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 188 FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP---VVV--NGVVFALA-YNGNLTALDLRSGQ 260 (376)
T ss_dssp TTEEEECC-TTTEEEEEETTTCCEEEEEECCC-----------CCCCCC---EEE--TTEEEEEC-TTSCEEEEETTTCC
T ss_pred CCEEEEEc-CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc---EEE--CCEEEEEe-cCcEEEEEECCCCc
Confidence 57888864 4678999997 78877554321 1110000000011222 233 68999986 46689999987664
Q ss_pred EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEE
Q 004302 353 LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 353 I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti 432 (762)
+.--.. +..+.+++++ ++.||+++. ++.|+.+|..+|++.--
T Consensus 261 ~~w~~~------------------------------------~~~~~~~~~~-~~~l~~~~~-~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 261 IMWKRE------------------------------------LGSVNDFIVD-GNRIYLVDQ-NDRVMALTIDGGVTLWT 302 (376)
T ss_dssp EEEEEC------------------------------------CCCEEEEEEE-TTEEEEEET-TCCEEEEETTTCCEEEE
T ss_pred EEeecc------------------------------------CCCCCCceEE-CCEEEEEcC-CCeEEEEECCCCcEEEe
Confidence 332110 1123456665 789999985 56899999988875311
Q ss_pred EcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEE
Q 004302 433 VKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCS 512 (762)
Q Consensus 433 ~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~s 512 (762)
....+ .. .. .+....++.|||.+. ++.|..+|..+|.+.
T Consensus 303 ~~~~~--------------------------------~~---~~-----~~~~~~~~~l~v~~~-~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 303 QSDLL--------------------------------HR---LL-----TSPVLYNGNLVVGDS-EGYLHWINVEDGRFV 341 (376)
T ss_dssp ECTTT--------------------------------TS---CC-----CCCEEETTEEEEECT-TSEEEEEETTTCCEE
T ss_pred ecccC--------------------------------CC---cc-----cCCEEECCEEEEEeC-CCeEEEEECCCCcEE
Confidence 10000 00 00 111234688999876 568999998887654
No 444
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.72 E-value=0.57 Score=49.18 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=77.6
Q ss_pred ceEEEccC-CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 268 GCISADES-GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 268 ~gIAVD~s-~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
..+++.+. +++++++=+.++.|+++|. +|+.+..+-.. -..-..++++|+ +.++++=+..+.||.
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h------------~~~v~~v~~~p~-~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH------------ESDVNSVRYYPS-GDAFASGSDDATCRL 266 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC------------SSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------CCCeEEEEEeCC-CCEEEEEeCCCeEEE
Confidence 35566543 3456666667889999997 67766555221 122467889885 445555556789999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|+..+....+.... ........++++++|.++++-...+.|++||..
T Consensus 267 wd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 267 YDLRADREVAIYSKE--------------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp EETTTTEEEEEECCT--------------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EECCCCcEEEEEcCC--------------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 998776433332111 001235678899999988888888999999997
Q ss_pred CCcEE
Q 004302 426 SGEIK 430 (762)
Q Consensus 426 ~g~I~ 430 (762)
++...
T Consensus 315 ~~~~~ 319 (354)
T 2pbi_B 315 KGSRV 319 (354)
T ss_dssp TCSEE
T ss_pred CCceE
Confidence 77643
No 445
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.65 E-value=0.12 Score=57.98 Aligned_cols=131 Identities=17% Similarity=0.049 Sum_probs=70.6
Q ss_pred ccCcccCCcceEEEccCCC------EEEEEeC-CCcEEEEEcCCCcEEEEe--cCCCCCCCCcccccc--cCCcceEEEe
Q 004302 259 VRNLLLHFPGCISADESGN------RLFLSDS-NHHRIIVFDGNGKILDCI--GSCPGFEDGEFESSK--LMRPAASFYH 327 (762)
Q Consensus 259 ~~~~~L~~P~gIAVD~s~g------~LYVADs-~nhrI~v~d~~G~i~~~i--GsG~G~~DG~~~~a~--fn~P~GIavd 327 (762)
.....|+.|+|+++|+..+ .+|++|. +.+. .+.-+..+ |...|+..-...-.. =..|.|+++-
T Consensus 211 I~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~------~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y 284 (463)
T 2wg3_C 211 VFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNR------SSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVY 284 (463)
T ss_dssp EEEECCSSCCBEEEESSCSSTTCSEEEEEECC------------CEEEEEEC----CCSCCCCEECCC----CEEEEEEC
T ss_pred EEEECCCCcceEEECCCCCCcccceEEEecccCCCCC------CCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEE
Confidence 3456799999999998643 6788985 3221 11122222 221333211000000 1468888884
Q ss_pred c------CCCeEEEEeCCCCeEEEEeCCCCE----EEEE-eecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 328 K------DDDCLYIVDSENHAIRRADMGRRV----LETV-YPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 328 ~------~~g~LYVADt~NhrIRkid~~~g~----I~Ti-aG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
. -.+.+||+|.. ++|.++.++.+. ...+ .|.- .. .......
T Consensus 285 ~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~-----------------~~----------~~~~~~~ 336 (463)
T 2wg3_C 285 RGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTS-----------------GS----------CRGYFSG 336 (463)
T ss_dssp CCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEEECEEET-----------------TS----------SCSCCCS
T ss_pred eCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCc-----------------cc----------ccccccC
Confidence 2 13458999986 778888764331 1111 0100 00 0011234
Q ss_pred CcceEEEcCCCcEEEEEC-------CCCEEEEEE
Q 004302 397 FPWHLMKSEDDNLLIINR-------SFETLWIMD 423 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~-------gN~rI~v~d 423 (762)
.|.+|++++||.|||+|. .+++||++.
T Consensus 337 r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 337 HILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred cceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 799999999999999997 467888775
No 446
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=95.64 E-value=0.019 Score=50.66 Aligned_cols=77 Identities=6% Similarity=-0.061 Sum_probs=42.7
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHh-cCCCcceeeCCCCcccc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMK-EYITFPILLSNKNFPQM 190 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k-~~itfPVl~D~~~~~~~ 190 (762)
|+-||++||++| ++..+.|+++.-. +.. +.++.. .......+.+.+++ .+.
T Consensus 24 v~ly~~~~Cp~C-------~~ak~~L~~~~i~---y~~--vdI~~~--~~~~~~~~~~~l~~~~g~-------------- 75 (103)
T 3nzn_A 24 VIMYGLSTCVWC-------KKTKKLLTDLGVD---FDY--VYVDRL--EGKEEEEAVEEVRRFNPS-------------- 75 (103)
T ss_dssp EEEEECSSCHHH-------HHHHHHHHHHTBC---EEE--EEGGGC--CHHHHHHHHHHHHHHCTT--------------
T ss_pred EEEEcCCCCchH-------HHHHHHHHHcCCC---cEE--EEeecc--CcccHHHHHHHHHHhCCC--------------
Confidence 444999999876 9999999887322 333 344320 00112233333333 222
Q ss_pred ccCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 191 ENGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 191 ~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
..+|+++++. | .+.|..+.++|+++|
T Consensus 76 -~~vP~l~i~~-~----~~igg~~~~~l~~~L 101 (103)
T 3nzn_A 76 -VSFPTTIIND-E----KAIVGFKEKEIRESL 101 (103)
T ss_dssp -CCSCEEEETT-T----EEEESCCHHHHHHHT
T ss_pred -CccCEEEECC-C----EEEEcCCHHHHHHHh
Confidence 2456666653 2 356677877777765
No 447
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=95.62 E-value=0.087 Score=61.05 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=67.1
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCC---------------------cEEEEEcCCC--------cE-EEEecCCCCCCC
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNH---------------------HRIIVFDGNG--------KI-LDCIGSCPGFED 310 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~n---------------------hrI~v~d~~G--------~i-~~~iGsG~G~~D 310 (762)
.+.|..|-+|++++.++.||++-++| .+|+++..++ ++ +..++..+...+
T Consensus 380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~ 459 (592)
T 3zwu_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA 459 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccc
Confidence 46799999999999899999998754 4688886521 11 122332121111
Q ss_pred -----C---cccccccCCcceEEEecCCCeEEEEeC------------CCCeEEEEeCCCCEEEEEee
Q 004302 311 -----G---EFESSKLMRPAASFYHKDDDCLYIVDS------------ENHAIRRADMGRRVLETVYP 358 (762)
Q Consensus 311 -----G---~~~~a~fn~P~GIavd~~~g~LYVADt------------~NhrIRkid~~~g~I~TiaG 358 (762)
+ ......|+.|-+|++++ .++|||+.- +|+.+..+++.++.+..++-
T Consensus 460 ~~~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~ 526 (592)
T 3zwu_A 460 GTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV 526 (592)
T ss_dssp TSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE
T ss_pred ccccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe
Confidence 1 11234699999999998 678999753 46788888888888888763
No 448
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.56 E-value=0.013 Score=54.18 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=18.9
Q ss_pred EEEEEeccCCCCccCCCCcchhhcHHHHHHH
Q 004302 111 LVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQ 141 (762)
Q Consensus 111 VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~ 141 (762)
|+| ||++||++| ++..+.|+++.
T Consensus 29 vvv-f~~~~Cp~C-------~~~~~~L~~~~ 51 (130)
T 2cq9_A 29 VVI-FSKTSCSYC-------TMAKKLFHDMN 51 (130)
T ss_dssp EEE-EECSSCSHH-------HHHHHHHHHHT
T ss_pred EEE-EEcCCChHH-------HHHHHHHHHcC
Confidence 444 999999876 99999998873
No 449
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.55 E-value=1.6 Score=45.17 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=52.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
....+++++.+..|+++ ..++.|++++.+|+.+..+... -.....+++++++..|+++. .++.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~-~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTG-VENGELRLWNKTGALLNVLNFH------------RAPIVSVKWNKDGTHIISMD-VENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEE-ETTSCEEEEETTSCEEEEECCC------------CSCEEEEEECTTSSEEEEEE-TTCCEEE
T ss_pred ceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCeeeeccCC------------CccEEEEEECCCCCEEEEEe-cCCeEEE
Confidence 45678899755555554 4567899999888877766421 12357788988666666665 4678999
Q ss_pred EeCCCCEEEE
Q 004302 346 ADMGRRVLET 355 (762)
Q Consensus 346 id~~~g~I~T 355 (762)
+|..++....
T Consensus 176 wd~~~~~~~~ 185 (425)
T 1r5m_A 176 WNVISGTVMQ 185 (425)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9987765443
No 450
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.12 Score=54.07 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=77.6
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-Cc------EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GK------ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS 338 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~------i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt 338 (762)
....+++++.+++++++-..++.|+++|.. ++ .....+... ..-.....++++++++.++++-+
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM---------SSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC---------CSSCCCCEEEECSSCTTEEEEES
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc---------CCCCCeeEEEeCCCCCcEEEEEc
Confidence 346788887646666666677889999874 32 111111101 11234678999986567777777
Q ss_pred CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCC
Q 004302 339 ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFE 417 (762)
Q Consensus 339 ~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~ 417 (762)
.++.|+.+|+.++.......... .. .+ .-.....++++++| .++++-..++
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~-~~------------~~---------------~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTS-PN------------SG---------------IKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCC-CS------------SC---------------CCCCEEEEEECSSCTTEEEEEECCS
T ss_pred CCCCEEEEECCCCCcceEEeccc-cc------------cc---------------cCCceEEEEECCCCCCEEEEEECCC
Confidence 78899999998765433321110 00 00 01246789999986 5666666666
Q ss_pred ---EEEEEECCCC
Q 004302 418 ---TLWIMDLASG 427 (762)
Q Consensus 418 ---rI~v~d~~~g 427 (762)
.|++||..++
T Consensus 238 ~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 238 NDPSILIWDLRNA 250 (416)
T ss_dssp SSCCCCEEETTST
T ss_pred CCceEEEEeCCCC
Confidence 9999998764
No 451
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.47 E-value=1 Score=45.94 Aligned_cols=114 Identities=7% Similarity=-0.071 Sum_probs=70.9
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
...++++++.+..|+.+ ..++.|+++|. +++....+-. .+ .-.....+++++++..|+++. .++.|+
T Consensus 54 ~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~-~~---------~~~~v~~~~~~~~~~~l~~~~-~d~~v~ 121 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWKPTLVI-LR---------INRAARCVRWAPNEKKFAVGS-GSRVIS 121 (372)
T ss_dssp CEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEEEEEEEC-CC---------CSSCEEEEEECTTSSEEEEEE-TTSSEE
T ss_pred cccEEEEeCCCCEEEEE-cCCCeEEEEECCCCeeeeeEEe-ec---------CCCceeEEEECCCCCEEEEEe-CCCEEE
Confidence 34678888755555544 46678888887 4554433211 00 112367889998665666665 567788
Q ss_pred EEeCCCCE----EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEE
Q 004302 345 RADMGRRV----LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLW 420 (762)
Q Consensus 345 kid~~~g~----I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~ 420 (762)
.+|...+. ...+. .+ .-.....+++.+++.++++-..++.|+
T Consensus 122 i~d~~~~~~~~~~~~~~-~~---------------------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHIK-KP---------------------------------IRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEEEETTTTEEEEEEEC-TT---------------------------------CCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEecCCCcceeeeeee-cc---------------------------------cCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 88765442 11210 00 012467899999988888877889999
Q ss_pred EEECC
Q 004302 421 IMDLA 425 (762)
Q Consensus 421 v~d~~ 425 (762)
+||..
T Consensus 168 ~~d~~ 172 (372)
T 1k8k_C 168 IFSAY 172 (372)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99964
No 452
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.45 E-value=0.41 Score=49.51 Aligned_cols=123 Identities=12% Similarity=0.115 Sum_probs=71.4
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEec------CCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIG------SCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iG------sG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
-.+|+++|.+++++++=..++.|+++|.+ +.....+- .+.... ...-.....++++++++.++++-+.
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-----DVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT-----TCCSSCEEEEEECTTCTTCEEEEET
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc-----ccCCCcEEEEEEccCCCcEEEEEeC
Confidence 36788887345555554567889999874 22111110 000000 0122345788888755556666666
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC---CCcEEEEECCC
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE---DDNLLIINRSF 416 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~---dG~LYVAD~gN 416 (762)
++.|+.+|..++.......... ....+++.+ ++.++++-..+
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEE-----------------------------------TVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-----------------------------------CEEEEEECSSCSSCCEEEEEESS
T ss_pred CCeEEEeeCCCCccceeccCCC-----------------------------------ceeeeEeecCCCCCcEEEEEcCC
Confidence 7899999998876555432210 123344443 45567777778
Q ss_pred CEEEEEECCCCcE
Q 004302 417 ETLWIMDLASGEI 429 (762)
Q Consensus 417 ~rI~v~d~~~g~I 429 (762)
+.|++||..++..
T Consensus 166 ~~v~~~d~~~~~~ 178 (408)
T 4a11_B 166 PKVQLCDLKSGSC 178 (408)
T ss_dssp SSEEEEESSSSCC
T ss_pred CeEEEEeCCCcce
Confidence 8899999877653
No 453
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.43 E-value=2.3 Score=43.92 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=72.1
Q ss_pred ceEEE-----ccCCCEEEEEeCCCcEEEEEcCCC--------cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEE
Q 004302 268 GCISA-----DESGNRLFLSDSNHHRIIVFDGNG--------KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 268 ~gIAV-----D~s~g~LYVADs~nhrI~v~d~~G--------~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LY 334 (762)
.+|++ .+.++.++++=+..+.|+++|... .....+. |. -..-..+++++ ++.+.
T Consensus 25 ~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~---~h---------~~~V~~~~~~~-~~~~l 91 (343)
T 2xzm_R 25 TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT---GH---------NHFVSDLALSQ-ENCFA 91 (343)
T ss_dssp EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC---CC---------SSCEEEEEECS-STTEE
T ss_pred hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc---cC---------CCceEEEEECC-CCCEE
Confidence 45666 443566777777778888887632 1122111 11 11235688887 45555
Q ss_pred EEeCCCCeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEE
Q 004302 335 IVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIIN 413 (762)
Q Consensus 335 VADt~NhrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD 413 (762)
++-+..+.|+.+|..++ .+.++.|.. ..-+.++++++|..+++=
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~-----------------------------------~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQ-----------------------------------SEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCC-----------------------------------SCEEEEEECSSTTEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCC-----------------------------------CcEEEEEECCCCCEEEEE
Confidence 66667889999998765 444553321 124678999998877777
Q ss_pred CCCCEEEEEECCCCc
Q 004302 414 RSFETLWIMDLASGE 428 (762)
Q Consensus 414 ~gN~rI~v~d~~~g~ 428 (762)
...+.|++||..+..
T Consensus 137 ~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 137 GAEREIKLWNILGEC 151 (343)
T ss_dssp ETTSCEEEEESSSCE
T ss_pred cCCCEEEEEeccCCc
Confidence 778999999987543
No 454
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.38 E-value=1.4 Score=45.79 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=71.4
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEE--EecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNG-KILD--CIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~--~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
+.|+++| ++.++++=..++.|++++.++ .... .+.. |. -..-..++++|++..| ++=+..+.|+
T Consensus 20 ~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~--~h---------~~~v~~~~~sp~g~~l-~s~s~D~~v~ 86 (345)
T 3fm0_A 20 WFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSE--GH---------QRTVRKVAWSPCGNYL-ASASFDATTC 86 (345)
T ss_dssp EEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECS--SC---------SSCEEEEEECTTSSEE-EEEETTSCEE
T ss_pred EEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeecc--cc---------CCcEEEEEECCCCCEE-EEEECCCcEE
Confidence 5789997 455666666788899998743 3321 1211 11 1224678999855444 4444567788
Q ss_pred EEeCCCCE---EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 345 RADMGRRV---LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 345 kid~~~g~---I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
.++...+. +.++.|.. .....|+++++|.++++=...+.|++
T Consensus 87 iw~~~~~~~~~~~~~~~h~-----------------------------------~~v~~v~~sp~~~~l~s~s~D~~v~i 131 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHE-----------------------------------NEVKSVAWAPSGNLLATCSRDKSVWV 131 (345)
T ss_dssp EEEECCC-EEEEEEECCCS-----------------------------------SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEccCCCeEEEEEccCCC-----------------------------------CCceEEEEeCCCCEEEEEECCCeEEE
Confidence 88876653 23332110 12567999999998888888899999
Q ss_pred EECCCC
Q 004302 422 MDLASG 427 (762)
Q Consensus 422 ~d~~~g 427 (762)
||..++
T Consensus 132 wd~~~~ 137 (345)
T 3fm0_A 132 WEVDEE 137 (345)
T ss_dssp EEECTT
T ss_pred EECCCC
Confidence 998765
No 455
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.34 E-value=1 Score=45.66 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=77.3
Q ss_pred CcceEEEccC---CCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCC---CeEEEEeC
Q 004302 266 FPGCISADES---GNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDD---DCLYIVDS 338 (762)
Q Consensus 266 ~P~gIAVD~s---~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~---g~LYVADt 338 (762)
.-.+|+++|. ++.++++-.+.+.|++++.. ++.+..+-.-.. . ..-.....++++++. +.++++-.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~---~----~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD---A----DADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---S----CTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---c----CCCCcEEEEEeccCCCCCCCEEEEec
Confidence 4467888863 34444444445589999874 554443322000 0 011235678888742 45556556
Q ss_pred CCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCC
Q 004302 339 ENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSF 416 (762)
Q Consensus 339 ~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN 416 (762)
.++.|+.+|..++. +.++.+.. .....+++.+ ++.++++=..+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~-----------------------------------~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHG-----------------------------------NAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCC-----------------------------------SCEEEEEECSSCTTEEEEEETT
T ss_pred CCCEEEEEEchhceEeeeecCCC-----------------------------------CcEEEEEECCCCCCEEEEEeCC
Confidence 67899999987654 44442211 1356788888 78888887788
Q ss_pred CEEEEEECCCCcEEEE
Q 004302 417 ETLWIMDLASGEIKEA 432 (762)
Q Consensus 417 ~rI~v~d~~~g~I~ti 432 (762)
+.|++||..++.....
T Consensus 138 g~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 138 HALRLWNIQTDTLVAI 153 (366)
T ss_dssp SCEEEEETTTTEEEEE
T ss_pred CeEEEEEeecCeEEEE
Confidence 9999999988764433
No 456
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.29 E-value=0.51 Score=54.23 Aligned_cols=80 Identities=10% Similarity=0.100 Sum_probs=50.0
Q ss_pred cceEEEecCCCeEEEEeC----CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 321 PAASFYHKDDDCLYIVDS----ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt----~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
...+++ +++..|+++-. .+..|+.+|..++....+..... . +. +.
T Consensus 289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----~-----------~~---------------~~ 337 (741)
T 2ecf_A 289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS----P-----------TW---------------VP 337 (741)
T ss_dssp EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC----S-----------SC---------------CC
T ss_pred EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC----C-----------Cc---------------CC
Confidence 566888 87888887643 34589999998887666543210 0 00 11
Q ss_pred CcceEEEcCCCcEEEEECCC--CEEEEEECCCCcEEEE
Q 004302 397 FPWHLMKSEDDNLLIINRSF--ETLWIMDLASGEIKEA 432 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN--~rI~v~d~~~g~I~ti 432 (762)
....+++++||.++++-... .+||.++.+++ +.++
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee
Confidence 23457788888866654433 47888887665 4444
No 457
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.26 E-value=0.68 Score=46.95 Aligned_cols=123 Identities=7% Similarity=-0.107 Sum_probs=71.7
Q ss_pred CcceEEEccCCCEEEEEeCC---CcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCC--CeEEEEeCC
Q 004302 266 FPGCISADESGNRLFLSDSN---HHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDD--DCLYIVDSE 339 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~---nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~--g~LYVADt~ 339 (762)
...+|+++|.+..++++-+. ++.|++++. +++.....-.+ .-..-..++++++. +.++++-..
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE-----------KAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEE-----------ESSCEEEEECTTCCTTTCCEEEEET
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeec-----------ccCcEEEEEEcCCCCCCceEEEecC
Confidence 45788999866677766554 889999987 45544332111 01124667887752 344444456
Q ss_pred CCeEEEEeCCCCE--EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCC
Q 004302 340 NHAIRRADMGRRV--LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE 417 (762)
Q Consensus 340 NhrIRkid~~~g~--I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~ 417 (762)
++.|+.+|..++. +.++.+.. + .. ..+.+..++++++++.++++-..++
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~-----~-----------~v-------------~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHK-----E-----------II-------------NAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCS-----S-----------CE-------------EEEEEESGGGCC-CCCEEEEEETTS
T ss_pred CCeEEEEeCCCCCccEEEEEecc-----c-----------ce-------------EEEeeccccccCCCccEEEEEeCCC
Confidence 7789999987653 44443221 0 00 0011112224567787777777788
Q ss_pred EEEEEECCCCc
Q 004302 418 TLWIMDLASGE 428 (762)
Q Consensus 418 rI~v~d~~~g~ 428 (762)
.|++||..++.
T Consensus 140 ~i~vwd~~~~~ 150 (357)
T 3i2n_A 140 TVKVWDPRQKD 150 (357)
T ss_dssp CEEEECTTSCS
T ss_pred eEEEEeCCCCC
Confidence 99999988764
No 458
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.23 E-value=1.3 Score=50.81 Aligned_cols=122 Identities=10% Similarity=0.043 Sum_probs=75.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+|++++ ++++.++=+..+.|+++|. +|+.+..+-. . -..-..+++++++. ..++=+..+.|+.+
T Consensus 434 ~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~---h---------~~~v~~~~~s~~~~-~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 434 EDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVG---H---------TKDVLSVAFSLDNR-QIVSASRDRTIKLW 499 (694)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC---C---------SSCEEEEEECTTSS-CEEEEETTSCEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeC---C---------CCCEEEEEEeCCCC-EEEEEeCCCEEEEE
Confidence 4577775 4555555566788888886 4555544421 1 11246788888544 44555567889999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC--cEEEEECCCCEEEEEEC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD--NLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG--~LYVAD~gN~rI~v~d~ 424 (762)
|..+....++...+ .+ .-..-..+++++++ .++++-...+.|++||.
T Consensus 500 d~~~~~~~~~~~~~----~~---------------------------h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 500 NTLGECKYTISEGG----EG---------------------------HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp CTTSCEEEEECSST----TS---------------------------CSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred ECCCCcceeeccCC----CC---------------------------CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 98766655553211 00 01134577887765 56777777889999999
Q ss_pred CCCcEEEEEc
Q 004302 425 ASGEIKEAVK 434 (762)
Q Consensus 425 ~~g~I~ti~~ 434 (762)
.++.+...+.
T Consensus 549 ~~~~~~~~~~ 558 (694)
T 3dm0_A 549 SNCKLRSTLA 558 (694)
T ss_dssp TTCCEEEEEC
T ss_pred CCCcEEEEEc
Confidence 8876554433
No 459
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=95.23 E-value=0.0052 Score=60.35 Aligned_cols=43 Identities=12% Similarity=0.011 Sum_probs=35.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCC-eEEEEEEcCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~-v~VvgV~~~~ 156 (762)
.++++|+.||+.|||+| .+..|.+ .++.++|++ ++|+-++.+-
T Consensus 13 ~~~~~vvef~d~~Cp~C-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 59 (189)
T 3l9v_A 13 VDAPAVVEFFSFYCPPC-------YAFSQTMGVDQAIRHVLPQGSRMVKYHVSL 59 (189)
T ss_dssp TTCCSEEEEECTTCHHH-------HHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred CCCCEEEEEECCCChhH-------HHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence 46899999999999866 8888886 689999986 8888888763
No 460
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.21 E-value=1.6 Score=44.81 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=75.5
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecC-----CCeEEEEeCCCCe
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD-----DDCLYIVDSENHA 342 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~-----~g~LYVADt~Nhr 342 (762)
..|++++ ++.++++=+..+.|+++|.++..+..+-... ..-..+++.+. ++.++++-+..+.
T Consensus 111 ~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~------------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~ 177 (319)
T 3frx_A 111 MSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN------------DWVSQVRVVPNEKADDDSVTIISAGNDKM 177 (319)
T ss_dssp EEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCS------------SCEEEEEECCC------CCEEEEEETTSC
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccC------------CcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence 5678886 5566666677889999999877665442111 11233444331 2345566667789
Q ss_pred EEEEeCCCCEEEE-EeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 343 IRRADMGRRVLET-VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 343 IRkid~~~g~I~T-iaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
|+.+|+..+.+.. +.|.. .....++++++|.++++=...+.|++
T Consensus 178 i~~wd~~~~~~~~~~~~h~-----------------------------------~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 178 VKAWNLNQFQIEADFIGHN-----------------------------------SNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp EEEEETTTTEEEEEECCCC-----------------------------------SCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EEEEECCcchhheeecCCC-----------------------------------CcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999988765433 32210 12467899999998888888899999
Q ss_pred EECCCCcEE
Q 004302 422 MDLASGEIK 430 (762)
Q Consensus 422 ~d~~~g~I~ 430 (762)
||..++...
T Consensus 223 wd~~~~~~~ 231 (319)
T 3frx_A 223 WNLAAKKAM 231 (319)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 999887643
No 461
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.20 E-value=2.6 Score=44.39 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=69.0
Q ss_pred CcceEEEccCCCEEEEEeC-CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISADESGNRLFLSDS-NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs-~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
+...|+++|++..+.+|-. ..+.|+++|. +++.+..++.. ..-..|+++|++..|..+ + .+.+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~l~s~-s-~~~~ 199 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKVVAYI-T-GSSL 199 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSEEEEE-C-SSCE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCceEEec-c-ceeE
Confidence 3567999987777777654 4678999998 67776666431 124679999855444444 3 3456
Q ss_pred EEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCC----E
Q 004302 344 RRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE----T 418 (762)
Q Consensus 344 Rkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~----r 418 (762)
++++..++ .+......+ . =.....+++.++|..+++-...+ .
T Consensus 200 ~~~~~~~~~~~~~~~~~~------------------~---------------~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 200 EVISTVTGSCIARKTDFD------------------K---------------NWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEETTTCCEEEEECCCC------------------T---------------TEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEEEeccCcceeeeecCC------------------C---------------CCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 77765544 332221110 0 00246788888887776543333 5
Q ss_pred EEEEECCCCc
Q 004302 419 LWIMDLASGE 428 (762)
Q Consensus 419 I~v~d~~~g~ 428 (762)
|+.++...+.
T Consensus 247 i~~~~~~~~~ 256 (365)
T 4h5i_A 247 LTKISIKSGN 256 (365)
T ss_dssp EEEEEEETTE
T ss_pred Eeecccccce
Confidence 7777765544
No 462
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.20 E-value=1.1 Score=50.94 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=83.8
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.-..|+++|.+..++++-+..+.|+++|. +++....+.. . -..-..++++| ++.++++=+..+.|+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---H---------~~~V~~v~fsp-dg~~las~s~D~~i~ 215 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---H---------TKFVHSVRYNP-DGSLFASTGGDGTIV 215 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---C---------SSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc---c---------cCceEEEEECC-CCCEEEEEECCCcEE
Confidence 34678888755556777778889999986 5666655532 1 12356799998 466666666788999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.+|..++.......... ... .+ .-...++++++++|..+++=...+.|++||.
T Consensus 216 lwd~~~g~~~~~~~~~~--~~~----------~~---------------h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDS--LKN----------VA---------------HSGSVFGLTWSPDGTKIASASADKTIKIWNV 268 (611)
T ss_dssp EEETTTCCEEEECBCTT--SSS----------CS---------------SSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCcEeeeecccc--ccc----------cc---------------cCCCEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99987654332221100 000 00 0124678999999998888888999999999
Q ss_pred CCCcEE
Q 004302 425 ASGEIK 430 (762)
Q Consensus 425 ~~g~I~ 430 (762)
.++...
T Consensus 269 ~~~~~~ 274 (611)
T 1nr0_A 269 ATLKVE 274 (611)
T ss_dssp TTTEEE
T ss_pred CCCcee
Confidence 887643
No 463
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.20 E-value=0.6 Score=49.00 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=76.6
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCc------------ccccccCCcceEEEecCCCe
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGE------------FESSKLMRPAASFYHKDDDC 332 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~------------~~~a~fn~P~GIavd~~~g~ 332 (762)
...++++++.+. .+++-..++.|+++|. +++.+..+....+..++. ...........+++++ ++.
T Consensus 183 ~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 260 (420)
T 3vl1_A 183 TVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGK 260 (420)
T ss_dssp CEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTE
T ss_pred cEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCC
Confidence 346788887544 4445556788999997 577766654311111100 0000113345567777 455
Q ss_pred EEEEeCCCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EE
Q 004302 333 LYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LL 410 (762)
Q Consensus 333 LYVADt~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LY 410 (762)
++++-+.++.|+.+|+.++. +.++. .+ .-...+.++++++|. ++
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~---------------------------------~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKEQTIQLP-SK---------------------------------FTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-CT---------------------------------TSSCEEEEEECSSCTTEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEcc-cc---------------------------------cCCCceeEEEeCCCCCEE
Confidence 55555567889999987654 33331 11 011367899999887 77
Q ss_pred EEECCCCEEEEEECCCCc
Q 004302 411 IINRSFETLWIMDLASGE 428 (762)
Q Consensus 411 VAD~gN~rI~v~d~~~g~ 428 (762)
++-..++.|++||..++.
T Consensus 307 ~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp EEEETTSEEEEEETTCTT
T ss_pred EEEeCCCeEEEEEcCCCc
Confidence 777788999999998753
No 464
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.15 E-value=1 Score=44.60 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=70.9
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
..+++.+.++..+++-..++.|+++|. ++....+-.. .-.....+++++ ++. +++-+.++.|+.+|
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-----------~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d 211 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQN-DKVIKTFSGI-----------HNDVVRHLAVVD-DGH-FISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEET-TEEEEEECSS-----------CSSCEEEEEEEE-TTE-EEEEETTSEEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEec-CceEEEEecc-----------CcccEEEEEEcC-CCe-EEEccCCCeEEEEE
Confidence 456666534445555556778888883 3333333210 112357788887 556 44555678999999
Q ss_pred CCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 348 MGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 348 ~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
..++. +.++.+.. .....++++++|.|+.+ ..++.|++||..+
T Consensus 212 ~~~~~~~~~~~~~~-----------------------------------~~i~~~~~~~~~~l~~~-~~dg~v~iwd~~~ 255 (313)
T 3odt_A 212 MHTGDVLRTYEGHE-----------------------------------SFVYCIKLLPNGDIVSC-GEDRTVRIWSKEN 255 (313)
T ss_dssp TTTCCEEEEEECCS-----------------------------------SCEEEEEECTTSCEEEE-ETTSEEEEECTTT
T ss_pred CCchhhhhhhhcCC-----------------------------------ceEEEEEEecCCCEEEE-ecCCEEEEEECCC
Confidence 87553 33442211 13568999988875554 4678999999988
Q ss_pred CcEEEE
Q 004302 427 GEIKEA 432 (762)
Q Consensus 427 g~I~ti 432 (762)
+.....
T Consensus 256 ~~~~~~ 261 (313)
T 3odt_A 256 GSLKQV 261 (313)
T ss_dssp CCEEEE
T ss_pred CceeEE
Confidence 765433
No 465
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.14 E-value=0.67 Score=53.25 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=51.8
Q ss_pred cceEEEecCC-CeEEEEeCCCCeEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCc
Q 004302 321 PAASFYHKDD-DCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 398 (762)
Q Consensus 321 P~GIavd~~~-g~LYVADt~NhrIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P 398 (762)
-..+++++++ ..++++-+..+.|+.+|+.++.+ .++.|.. ...
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-----------------------------------~~v 564 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT-----------------------------------GYV 564 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS-----------------------------------SCE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC-----------------------------------CCE
Confidence 3567787643 24556666778899999876543 3332211 135
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 399 WHLMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 399 ~gIavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
+.|+++++|.++++-...+.|++||..++.
T Consensus 565 ~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp EEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 679999999999988889999999998775
No 466
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.12 E-value=0.79 Score=48.42 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
..-..|++++.+..|+.+ ..+.|+++|.. ++....+...+... ...-.....++++|++..++++-+..+.
T Consensus 178 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANM-----EELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSG-----GGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccc-----cccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 345688999754544444 68999999986 44444432211000 0111235788999855356666667789
Q ss_pred EEEEeCCCCE-----EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCC
Q 004302 343 IRRADMGRRV-----LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE 417 (762)
Q Consensus 343 IRkid~~~g~-----I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~ 417 (762)
|+.+|+.++. +.++.+..... ... .. .........++++++|.++++-.. +
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~---~~------------------~~~~~~v~~~~~s~~g~~l~~~~~-~ 306 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPS--NRS---FF------------------SEIISSISDVKFSHSGRYMMTRDY-L 306 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-------CC---HH------------------HHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred EEEEECcCCccccceeeEeccCCCcc--ccc---cc------------------cccCceEEEEEECCCCCEEEEeeC-C
Confidence 9999987665 34543221000 000 00 000124678999999887777666 9
Q ss_pred EEEEEECCC
Q 004302 418 TLWIMDLAS 426 (762)
Q Consensus 418 rI~v~d~~~ 426 (762)
.|++||..+
T Consensus 307 ~v~iwd~~~ 315 (447)
T 3dw8_B 307 SVKVWDLNM 315 (447)
T ss_dssp EEEEEETTC
T ss_pred eEEEEeCCC
Confidence 999999875
No 467
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.08 E-value=1.1 Score=46.81 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=67.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCc--ceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 271 SADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRP--AASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 271 AVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P--~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
+++ ++.||+++. ++.|+.+|. +|+++-..-.+..... ......+ ..++++ ++.|||... ++.|..+|
T Consensus 50 ~v~--~~~v~~~~~-~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~v~v~~~-~g~l~a~d 119 (376)
T 3q7m_A 50 ALA--DNVVYAADR-AGLVKALNADDGKEIWSVSLAEKDGW----FSKEPALLSGGVTVS--GGHVYIGSE-KAQVYALN 119 (376)
T ss_dssp EEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCC---C----CSCCCCCEEEEEEEE--TTEEEEEET-TSEEEEEE
T ss_pred EEE--CCEEEEEcC-CCeEEEEEccCCceeeeecCcccccc----ccccCcccccCceEe--CCEEEEEcC-CCEEEEEE
Confidence 454 789999975 569999998 7987744432110000 0000111 334554 789999874 57899999
Q ss_pred CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 348 MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 348 ~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
..+|.+.--...+. .....| ++. +|.|||.. .++.|+.+|..+|
T Consensus 120 ~~tG~~~W~~~~~~-------------------------------~~~~~p---~~~-~~~v~v~~-~~g~l~~~d~~tG 163 (376)
T 3q7m_A 120 TSDGTVAWQTKVAG-------------------------------EALSRP---VVS-DGLVLIHT-SNGQLQALNEADG 163 (376)
T ss_dssp TTTCCEEEEEECSS-------------------------------CCCSCC---EEE-TTEEEEEC-TTSEEEEEETTTC
T ss_pred CCCCCEEEEEeCCC-------------------------------ceEcCC---EEE-CCEEEEEc-CCCeEEEEECCCC
Confidence 88765432211110 001123 232 67888865 4679999999888
Q ss_pred cEE
Q 004302 428 EIK 430 (762)
Q Consensus 428 ~I~ 430 (762)
++.
T Consensus 164 ~~~ 166 (376)
T 3q7m_A 164 AVK 166 (376)
T ss_dssp CEE
T ss_pred cEE
Confidence 754
No 468
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=95.07 E-value=0.016 Score=55.04 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=19.0
Q ss_pred EEEEEeccCCCCccCCCCcchhhcHHHHHHH
Q 004302 111 LVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQ 141 (762)
Q Consensus 111 VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~ 141 (762)
|+| ||++||++| ++..|.|+++.
T Consensus 51 Vvv-f~~~~Cp~C-------~~~k~~L~~~~ 73 (146)
T 2ht9_A 51 VVI-FSKTSCSYC-------TMAKKLFHDMN 73 (146)
T ss_dssp EEE-EECTTCHHH-------HHHHHHHHHHT
T ss_pred EEE-EECCCChhH-------HHHHHHHHHcC
Confidence 444 999999877 99999998873
No 469
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.06 E-value=0.42 Score=51.46 Aligned_cols=115 Identities=13% Similarity=0.011 Sum_probs=75.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
.+|+++|.+++++++=+..+.|+++|.++.....+..... .-..-..++++++ +.++++-..++.|+.+|
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT---------INIWFCSLDVSAS-SRMVVTGDNVGNVILLN 237 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS---------CSCCCCCEEEETT-TTEEEEECSSSBEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC---------CCccEEEEEECCC-CCEEEEEeCCCcEeeec
Confidence 5788887677777777788999999998766655543211 1122356888874 55555556678899999
Q ss_pred CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEECCC
Q 004302 348 MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLAS 426 (762)
Q Consensus 348 ~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d~~~ 426 (762)
+.+..+.++.+. -..-.+|++++++. ++++-...+.|++||..+
T Consensus 238 ~~~~~~~~~~~h-----------------------------------~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 238 MDGKELWNLRMH-----------------------------------KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp SSSCBCCCSBCC-----------------------------------SSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred cCcceeEEEecc-----------------------------------cceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 865544333211 01245788888754 666666778899999865
Q ss_pred C
Q 004302 427 G 427 (762)
Q Consensus 427 g 427 (762)
+
T Consensus 283 ~ 283 (435)
T 4e54_B 283 V 283 (435)
T ss_dssp C
T ss_pred c
Confidence 4
No 470
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.85 E-value=3 Score=43.10 Aligned_cols=130 Identities=8% Similarity=-0.026 Sum_probs=73.9
Q ss_pred CcceEEEc----cCCCEEEEEeCCCcEEEEEcCCC-------cEE------EEecCCCCCCCCcccccccCCcceEEEec
Q 004302 266 FPGCISAD----ESGNRLFLSDSNHHRIIVFDGNG-------KIL------DCIGSCPGFEDGEFESSKLMRPAASFYHK 328 (762)
Q Consensus 266 ~P~gIAVD----~s~g~LYVADs~nhrI~v~d~~G-------~i~------~~iGsG~G~~DG~~~~a~fn~P~GIavd~ 328 (762)
...+++++ +.+..++++-..++.|+++|... +.+ ...+.-.. ....-.....+++++
T Consensus 123 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 123 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES------PMTPSQFATSVDISE 196 (397)
T ss_dssp CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC------SSSSCCCCCEEEECT
T ss_pred cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc------ccCCCCCceEEEECC
Confidence 34678888 75555144444567788877632 221 11110000 001123468899998
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC
Q 004302 329 DDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD 407 (762)
Q Consensus 329 ~~g~LYVADt~NhrIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG 407 (762)
+ + ++++-+.++.|+.+|..++.. .++.+.. + . ...-.....+++++++
T Consensus 197 ~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~------------h------------~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 197 R-G-LIATGFNNGTVQISELSTLRPLYNFESQH-----S------------M------------INNSNSIRSVKFSPQG 245 (397)
T ss_dssp T-S-EEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------------CCCCCEEEEEECSST
T ss_pred C-c-eEEEEeCCCcEEEEECCCCceeEEEeccc-----c------------c------------cccCCccceEEECCCC
Confidence 4 5 666677788999999876643 3332200 0 0 0001136789999988
Q ss_pred cEEEEECCC---CEEEEEECCCCcEEEE
Q 004302 408 NLLIINRSF---ETLWIMDLASGEIKEA 432 (762)
Q Consensus 408 ~LYVAD~gN---~rI~v~d~~~g~I~ti 432 (762)
.++++-..+ +.|++||..++.....
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred CEEEEEecCCCCceEEEEECCCCcccce
Confidence 877776666 8999999987764433
No 471
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.85 E-value=0.23 Score=50.56 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=64.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCC-Cc-EEEEecCCCCCCCCcccccccCCcceEE----EecCCCeEEEEeCCCCeEE
Q 004302 271 SADESGNRLFLSDSNHHRIIVFDGN-GK-ILDCIGSCPGFEDGEFESSKLMRPAASF----YHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 271 AVD~s~g~LYVADs~nhrI~v~d~~-G~-i~~~iGsG~G~~DG~~~~a~fn~P~GIa----vd~~~g~LYVADt~NhrIR 344 (762)
++++ +++++++-..++.|+++|.. ++ .+..+....+.. -..-..++ +++ ++.++++-+.++.|+
T Consensus 124 ~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 124 GIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN--------KRDCWTVAFGNAYNQ-EERVVCAGYDNGDIK 193 (357)
T ss_dssp GCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC--------CCCEEEEEEECCCC--CCCEEEEEETTSEEE
T ss_pred ccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC--------CCceEEEEEEeccCC-CCCEEEEEccCCeEE
Confidence 3454 34445555567889999873 33 333332211110 01123344 555 445555555678999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC---CCcEEEEECCCCEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE---DDNLLIINRSFETLWI 421 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~---dG~LYVAD~gN~rI~v 421 (762)
.+|..++......+.. .....+++++ ++..+++-..++.|++
T Consensus 194 i~d~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 194 LFDLRNMALRWETNIK-----------------------------------NGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp EEETTTTEEEEEEECS-----------------------------------SCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred EEECccCceeeecCCC-----------------------------------CceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 9999888765443221 1356788887 7777777778899999
Q ss_pred EECCC
Q 004302 422 MDLAS 426 (762)
Q Consensus 422 ~d~~~ 426 (762)
||..+
T Consensus 239 ~d~~~ 243 (357)
T 3i2n_A 239 FDMRT 243 (357)
T ss_dssp EEEEE
T ss_pred EeCcC
Confidence 98754
No 472
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.79 E-value=1.2 Score=52.28 Aligned_cols=121 Identities=14% Similarity=0.100 Sum_probs=79.0
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-..|+.| .+++|||+-. .+-|.+++.. +++.... .. + ..-+....|+.|+ ++.|||+-. +-|.+
T Consensus 409 v~~i~~d-~~g~lWigt~-~~Gl~~~~~~~~~~~~~~-~~-~--------~~~~~v~~i~~d~-~g~lwigt~--~Gl~~ 473 (781)
T 3v9f_A 409 VLCSLKD-SEGNLWFGTY-LGNISYYNTRLKKFQIIE-LE-K--------NELLDVRVFYEDK-NKKIWIGTH--AGVFV 473 (781)
T ss_dssp EEEEEEC-TTSCEEEEET-TEEEEEECSSSCEEEECC-ST-T--------TCCCCEEEEEECT-TSEEEEEET--TEEEE
T ss_pred eEEEEEC-CCCCEEEEec-cCCEEEEcCCCCcEEEec-cC-C--------CCCCeEEEEEECC-CCCEEEEEC--CceEE
Confidence 4567777 4788998753 4568888874 5554432 10 0 0123456788885 789999976 56999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|..++.+..+.... .. + ..-+...+|+.|++|.|||+-.+++ |.+++.+
T Consensus 474 ~~~~~~~~~~~~~~~-----~~----------~--------------~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~ 523 (781)
T 3v9f_A 474 IDLASKKVIHHYDTS-----NS----------Q--------------LLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD 523 (781)
T ss_dssp EESSSSSCCEEECTT-----TS----------S--------------CSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred EeCCCCeEEecccCc-----cc----------c--------------cccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence 998776554442110 00 0 0124678999999999999987544 8889988
Q ss_pred CCcEEEE
Q 004302 426 SGEIKEA 432 (762)
Q Consensus 426 ~g~I~ti 432 (762)
++.+..+
T Consensus 524 ~~~~~~~ 530 (781)
T 3v9f_A 524 MQLVRKF 530 (781)
T ss_dssp CCEEEEE
T ss_pred CCeEEEc
Confidence 8766544
No 473
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.74 E-value=2.4 Score=42.63 Aligned_cols=113 Identities=14% Similarity=0.023 Sum_probs=69.6
Q ss_pred ceEEEccCC-CEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 268 GCISADESG-NRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 268 ~gIAVD~s~-g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
..+++.+.. +.++++-...+.|+++|. +++.+..+-. . -..-..|+++|+ +.++++=+.++.|+.
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~---h---------~~~v~~~~~s~~-~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG---H---------TGYLNTVTVSPD-GSLCASGGKDGQAML 241 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC---C---------SSCEEEEEECTT-SSEEEEEETTCEEEE
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC---C---------CCcEEEEEECCC-CCEEEEEeCCCeEEE
Confidence 345555433 345566666778888887 4565554421 1 112467899985 445555556789999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+|..+.........+ .....+++.+++.++.+- .++.|++||..
T Consensus 242 wd~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~ 285 (340)
T 4aow_A 242 WDLNEGKHLYTLDGG-----------------------------------DIINALCFSPNRYWLCAA-TGPSIKIWDLE 285 (340)
T ss_dssp EETTTTEEEEEEECS-----------------------------------SCEEEEEECSSSSEEEEE-ETTEEEEEETT
T ss_pred EEeccCceeeeecCC-----------------------------------ceEEeeecCCCCceeecc-CCCEEEEEECC
Confidence 998876543332111 023567777777766654 46889999998
Q ss_pred CCcE
Q 004302 426 SGEI 429 (762)
Q Consensus 426 ~g~I 429 (762)
++..
T Consensus 286 ~~~~ 289 (340)
T 4aow_A 286 GKII 289 (340)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7754
No 474
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.73 E-value=3.9 Score=41.41 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=73.1
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+++.+. ++++++=+..+.|+++|. +|+.+..+-... ..-..|+++|+ +.++++-+..+.|+.+
T Consensus 59 ~~~~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~------------~~v~~~~~~~~-~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 59 RAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP------------DYIRSIAVHPT-KPYVLSGSDDLTVKLW 124 (304)
T ss_dssp EEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCS------------SCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred EEEEEeCC-CCEEEEECCCCEEEEEECCCCcEEEEEeCCC------------CcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence 35667754 445555566889999997 577665553211 22467899985 4555566677899999
Q ss_pred eCCCC-EE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEEEEE
Q 004302 347 DMGRR-VL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLWIMD 423 (762)
Q Consensus 347 d~~~g-~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~v~d 423 (762)
|..++ .+ .++.|.. ..-..+++++ ++.++++=...+.|++||
T Consensus 125 d~~~~~~~~~~~~~h~-----------------------------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 125 NWENNWALEQTFEGHE-----------------------------------HFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp EGGGTTEEEEEECCCC-----------------------------------SCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred ECCCCcchhhhhcccC-----------------------------------CcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 98765 33 2332210 1246788887 578888878889999999
Q ss_pred CCCCc
Q 004302 424 LASGE 428 (762)
Q Consensus 424 ~~~g~ 428 (762)
..++.
T Consensus 170 ~~~~~ 174 (304)
T 2ynn_A 170 LGQST 174 (304)
T ss_dssp TTCSS
T ss_pred CCCCC
Confidence 86543
No 475
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.73 E-value=2.5 Score=44.24 Aligned_cols=115 Identities=10% Similarity=0.069 Sum_probs=74.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 271 SADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 271 AVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
+.++ +++++++-..++.|+++|.. ++....+.. .-.....+++++++..|+ +=+.++.|+.+|+.
T Consensus 104 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 104 TAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQA------------HVSEITKLKFFPSGEALI-SSSQDMQLKIWSVK 169 (420)
T ss_dssp EECS-SSCEEEEEETTSCEEEECTTSCEEEEETTS------------SSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred EEec-CCCEEEEEECCCCEEEEeCCCcceeeeccc------------ccCccEEEEECCCCCEEE-EEeCCCeEEEEeCC
Confidence 3454 44455555567889999974 454444311 112357889998555454 44567899999987
Q ss_pred CC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 350 RR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 350 ~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
++ .+.++.+.. .....++++++|.++++-...+.|++||..++.
T Consensus 170 ~~~~~~~~~~h~-----------------------------------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 170 DGSNPRTLIGHR-----------------------------------ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TCCCCEEEECCS-----------------------------------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred CCcCceEEcCCC-----------------------------------CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 54 333332210 135678999998888887788999999998887
Q ss_pred EEEEEc
Q 004302 429 IKEAVK 434 (762)
Q Consensus 429 I~ti~~ 434 (762)
....+.
T Consensus 215 ~~~~~~ 220 (420)
T 3vl1_A 215 TIHTFN 220 (420)
T ss_dssp EEEEEC
T ss_pred eeEEee
Confidence 554443
No 476
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=94.69 E-value=0.73 Score=56.00 Aligned_cols=117 Identities=9% Similarity=-0.022 Sum_probs=74.3
Q ss_pred CcceEEEc-cCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISAD-ESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD-~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
.+..++++ |.+..|+++. ...|++++.. |......+. .+ ..+..++++ ++..|+++.. .++|
T Consensus 297 ~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~s-dg~~l~~~s~-~~~l 360 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEP-LR-----------IRYVRRGGD-TKVAFIHGTR-EGDF 360 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCC-SC-----------EEEEEECSS-SEEEEEEEET-TEEE
T ss_pred ccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCC-Cc-----------ceEEeeeEc-CCCeEEEEEC-CCce
Confidence 46788998 8766676655 6688888874 443332111 10 023445555 4555555444 5678
Q ss_pred E-EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 344 R-RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 344 R-kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
. .++..++.+..+.+. -..+..+++++||..++.-...+.|++|
T Consensus 361 ~~~~d~~~~~~~~l~~~-----------------------------------~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 361 LGIYDYRTGKAEKFEEN-----------------------------------LGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEEETTTCCEEECCCC-----------------------------------CCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEECCCCCceEecCC-----------------------------------ccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8 888877665554311 1146789999998766555566799999
Q ss_pred ECCCCcEEEEE
Q 004302 423 DLASGEIKEAV 433 (762)
Q Consensus 423 d~~~g~I~ti~ 433 (762)
|..++.+..+.
T Consensus 406 d~~tg~~~~~~ 416 (1045)
T 1k32_A 406 DLETGKPTVIE 416 (1045)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCceEEec
Confidence 99999877664
No 477
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.66 E-value=2 Score=50.41 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=101.9
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
....|+.| .+|+|||+-. +-+.+++.+ +++....... +. ....-+....|+.|+ ++.|||+-. +-|.
T Consensus 453 ~v~~i~~d-~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~----~~--~~~~~~~i~~i~~d~-~g~lWigt~--~Gl~ 520 (795)
T 4a2l_A 453 NVYAILPD-GEGNLWLGTL--SALVRFNPEQRSFTTIEKEK----DG--TPVVSKQITTLFRDS-HKRLWIGGE--EGLS 520 (795)
T ss_dssp CEEEEEEC-SSSCEEEEES--SCEEEEETTTTEEEECCBCT----TC--CBCCCCCEEEEEECT-TCCEEEEES--SCEE
T ss_pred eeEEEEEC-CCCCEEEEec--CceeEEeCCCCeEEEccccc----cc--cccCCceEEEEEECC-CCCEEEEeC--CceE
Confidence 44667777 3678888875 468888874 4444332110 00 000113457788885 789999987 4588
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
+++..++.+ .+.... .. .++ .-+...+|+.|++|.|||+-.+ -|.++|+
T Consensus 521 ~~~~~~~~~-~~~~~~--~~------------~~l--------------~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~ 569 (795)
T 4a2l_A 521 VFKQEGLDI-QKASIL--PV------------SNV--------------TKLFTNCIYEASNGIIWVGTRE--GFYCFNE 569 (795)
T ss_dssp EEEEETTEE-EECCCS--CS------------CGG--------------GGSCEEEEEECTTSCEEEEESS--CEEEEET
T ss_pred EEeCCCCeE-EEecCC--CC------------CCC--------------CCCeeEEEEECCCCCEEEEeCC--CceeECC
Confidence 999877776 442110 00 011 1135678999999999999864 6899999
Q ss_pred CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEE-ecCCEEEEEECCCCEEEE
Q 004302 425 ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI-AFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 425 ~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~-~~~g~LYVADt~NhRIrk 503 (762)
+++.+..+-... +.|... ..++. ..+|+||++- ++-|.+
T Consensus 570 ~~~~~~~~~~~~-------------------------------------gl~~~~-i~~i~~d~~g~lWi~t--~~Gl~~ 609 (795)
T 4a2l_A 570 KDKQIKRYNTTN-------------------------------------GLPNNV-VYGILEDSFGRLWLST--NRGISC 609 (795)
T ss_dssp TTTEEEEECGGG-------------------------------------TCSCSC-EEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCcEEEeCCCC-------------------------------------CCchhh-eEEEEECCCCCEEEEc--CCceEE
Confidence 887655431101 112111 12332 3467899987 467888
Q ss_pred EECCCCcEEEEe
Q 004302 504 LNRESGVCSNFQ 515 (762)
Q Consensus 504 idl~~~~~sti~ 515 (762)
++++++.+.++.
T Consensus 610 ~~~~~~~~~~~~ 621 (795)
T 4a2l_A 610 FNPETEKFRNFT 621 (795)
T ss_dssp EETTTTEEEEEC
T ss_pred EcCCCCcEEEcC
Confidence 999888776653
No 478
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=94.61 E-value=1.3 Score=45.19 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCcceEEEccCCCEEEE-EeC---CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 265 HFPGCISADESGNRLFL-SDS---NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYV-ADs---~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.....++++|.+..|+. ++. +..+|++++.+ |+........ . ..+++++|++..|+++-
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------------~-~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-------------N-IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-------------E-EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-------------C-ccceeECCCCCEEEEEE
Confidence 45567888987777764 433 45679999875 4444333210 1 45678888777777764
No 479
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.58 E-value=2.6 Score=48.47 Aligned_cols=122 Identities=7% Similarity=0.034 Sum_probs=75.8
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-C-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-G-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
....+++++.+..|+++. .++.|++++.. + .....+... -.....++++|.++.++++-+.++.|
T Consensus 99 ~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGS-DDLTVKLWNWENNWALEQTFEGH------------EHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSEEEEEEGGGTSEEEEEEECC------------SSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CEEEEEEeCCCCEEEEEc-CCCEEEEEECCCCceEEEEEcCC------------CCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 356788887555555554 56788888863 3 444443221 12357788887455666666677899
Q ss_pred EEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC--CCcEEEEECCCCEEE
Q 004302 344 RRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE--DDNLLIINRSFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~--dG~LYVAD~gN~rI~ 420 (762)
+.+|..++.. .++.+ + .-.....+++.+ +|.++++-..+++|+
T Consensus 166 ~vwd~~~~~~~~~~~~-~---------------------------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTT-G---------------------------------QERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEETTCSSCSEEEEC-C---------------------------------CTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEECCCCcceeEEec-C---------------------------------CCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999754322 12211 0 001345677776 788888888889999
Q ss_pred EEECCCCcEEEEEc
Q 004302 421 IMDLASGEIKEAVK 434 (762)
Q Consensus 421 v~d~~~g~I~ti~~ 434 (762)
+||..++.....+.
T Consensus 212 ~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 212 IWDYQTKSCVATLE 225 (814)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCCcEEEEEc
Confidence 99988776444333
No 480
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.53 E-value=1.6 Score=46.18 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=98.9
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE 354 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~ 354 (762)
++.++++-..++.|+++|. +++.+..+-.. . .-.....++++++ +.++++-+.++.|+.+|+..+...
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---------h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENS-P---------RHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECC-G---------GGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-C---------CCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEE
Confidence 4666666677899999998 66766655320 0 1124678999985 445555556788999998876543
Q ss_pred EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEE----cCCCcEEEEECCCCEEEEEECCCCcEE
Q 004302 355 TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK----SEDDNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 355 TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIav----d~dG~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
.....+ +. + .-..+++ ++++.++++-..++.|++||..++...
T Consensus 250 ~~~~~~-----~~----------~------------------~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 250 RSWSFG-----DH----------A------------------PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp EEEBCT-----TC----------E------------------EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred EEEecC-----CC----------C------------------ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 322111 00 0 1233433 346777888888889999999888755
Q ss_pred EEEcCCceeeEEeceehhhhhhhhccCCcc-ccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCC
Q 004302 431 EAVKGFSKVLEICGVLVMEKVFLLKQMPQD-WLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 431 ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~-~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
..+.+...... .+.-.|.. .+. ...+.+..+.....+++..++.++++-..++.|+.+|+.++
T Consensus 297 ~~~~~~~~~~~-----------~~~~~~~~~~l~-----~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 297 YAFINSDEQPS-----------MEHFLPIEKGLE-----ELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp EEEESSSSCCC-----------GGGGSCBCSSGG-----GCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred EEEEcCCCCCc-----------cceecccccccc-----cceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence 44443321100 00000100 000 00011111111123333336788888888899999999887
Q ss_pred cEE
Q 004302 510 VCS 512 (762)
Q Consensus 510 ~~s 512 (762)
...
T Consensus 361 ~~~ 363 (437)
T 3gre_A 361 SSS 363 (437)
T ss_dssp GGC
T ss_pred ccc
Confidence 644
No 481
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.025 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=18.5
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHH
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQ 141 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~ 141 (762)
+.-|+++||++| ++..+.|+++.
T Consensus 14 v~ly~~~~Cp~C-------~~~~~~L~~~g 36 (92)
T 3ic4_A 14 VLMYGLSTCPHC-------KRTLEFLKREG 36 (92)
T ss_dssp SEEEECTTCHHH-------HHHHHHHHHHT
T ss_pred EEEEECCCChHH-------HHHHHHHHHcC
Confidence 445899999876 99888888873
No 482
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.96 Score=46.73 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=72.2
Q ss_pred cceEEEcc-CCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 267 PGCISADE-SGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 267 P~gIAVD~-s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
-.+++++| .+++++++=+..+.|+++|. +++.....-... -.....++++| ++.++++-+.++.|+
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-----------~~~i~~~~~~p-dg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS-----------DVEYSSGVLHK-DSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-----------SCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-----------CCceEEEEECC-CCCEEEEEcCCCEEE
Confidence 35677775 13556665567888999997 566644431110 11257789998 566666666788999
Q ss_pred EEeCCCCEEE--EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 345 RADMGRRVLE--TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 345 kid~~~g~I~--TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
.+|..++... ++.+. .-...+.|+++++|..+++-..+ .|++|
T Consensus 196 iwd~~~~~~~~~~~~~~----------------------------------h~~~v~~l~fs~~g~~l~s~~~~-~v~iw 240 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVD----------------------------------EEAKIKEVKFADNGYWMVVECDQ-TVVCF 240 (343)
T ss_dssp EEESSCTTSCCEECCCC----------------------------------TTSCEEEEEECTTSSEEEEEESS-BEEEE
T ss_pred EEECCCCCCCccEEecc----------------------------------CCCCEEEEEEeCCCCEEEEEeCC-eEEEE
Confidence 9998765322 22110 01135789999998766655544 99999
Q ss_pred ECCCCc
Q 004302 423 DLASGE 428 (762)
Q Consensus 423 d~~~g~ 428 (762)
|..++.
T Consensus 241 d~~~~~ 246 (343)
T 3lrv_A 241 DLRKDV 246 (343)
T ss_dssp ETTSST
T ss_pred EcCCCC
Confidence 987653
No 483
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=94.26 E-value=2.8 Score=43.08 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=74.9
Q ss_pred eEEEccC--CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 269 CISADES--GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 269 gIAVD~s--~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
.+++.+. ++.++++-..++.|+++|. +++.+..+-.. -.....+++++++..++++-..++.|+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 146 SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH------------RQEILAVSWSPRYDYILATASADSRVKL 213 (408)
T ss_dssp EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC------------CSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC------------CCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence 4444432 3335555556778888887 45544444211 1224678999866656666667788999
Q ss_pred EeCCCC--EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 346 ADMGRR--VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 346 id~~~g--~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
+|...+ .+.++.... ..... .. .......-.....++++++|..+++-..++.|++||
T Consensus 214 ~d~~~~~~~~~~~~~~~--~~~~~----------~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 214 WDVRRASGCLITLDQHN--GKKSQ----------AV--------ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp EETTCSSCCSEECCTTT--TCSCC----------CT--------TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EECCCCCcccccccccc--cccce----------ee--------ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 998654 222221110 00000 00 000011123568899999998777777889999999
Q ss_pred CCCCcE
Q 004302 424 LASGEI 429 (762)
Q Consensus 424 ~~~g~I 429 (762)
..++..
T Consensus 274 ~~~~~~ 279 (408)
T 4a11_B 274 SSNGEN 279 (408)
T ss_dssp TTTCCB
T ss_pred CCCCcc
Confidence 987653
No 484
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.14 E-value=0.83 Score=47.45 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEec-CCCeEE-EEeCC----CCeEEEEeCCCCEEEEEe
Q 004302 285 NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHK-DDDCLY-IVDSE----NHAIRRADMGRRVLETVY 357 (762)
Q Consensus 285 ~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~-~~g~LY-VADt~----NhrIRkid~~~g~I~Tia 357 (762)
...+|+++|. +|+........ .....++++| ++..|+ +++.. ..+|..+|.+++.+..+.
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~-------------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQEN-------------QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEES-------------SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred CcceEEEEECCCCceEEeecCC-------------ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 4478999987 56655554321 1235677887 666664 44432 458888887766555442
Q ss_pred ecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEECCCC---EEEEEECCCCcEEEE
Q 004302 358 PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINRSFE---TLWIMDLASGEIKEA 432 (762)
Q Consensus 358 G~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~gN~---rI~v~d~~~g~I~ti 432 (762)
... . + .....+++++||. | |+++.... .|+++|.+++....+
T Consensus 233 ~~~----~------------~-----------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 233 THA----E------------G-----------------ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp CCC----T------------T-----------------EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred eCC----C------------C-----------------cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 110 0 0 0123467888876 5 66665433 399999999886655
No 485
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.08 E-value=5.2 Score=41.75 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=28.5
Q ss_pred CcceEEEcCCCcEEEEECCCCE-EEEEECCCCcEE
Q 004302 397 FPWHLMKSEDDNLLIINRSFET-LWIMDLASGEIK 430 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN~r-I~v~d~~~g~I~ 430 (762)
..+.|+++++|.++++-...+. |++||..++...
T Consensus 197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 4578999999998888888887 999999887643
No 486
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=94.06 E-value=0.025 Score=50.79 Aligned_cols=37 Identities=3% Similarity=-0.400 Sum_probs=25.1
Q ss_pred EEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 111 LVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 111 VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
.|+.||++||++| ++..|.|+++...+++ +.-|+++.
T Consensus 20 ~vv~f~~~~Cp~C-------~~~~~~L~~~~~~~~~--~~~vdi~~ 56 (114)
T 2hze_A 20 KVTIFVKYTCPFC-------RNALDILNKFSFKRGA--YEIVDIKE 56 (114)
T ss_dssp CEEEEECTTCHHH-------HHHHHHHTTSCBCTTS--EEEEEGGG
T ss_pred CEEEEEeCCChhH-------HHHHHHHHHcCCCcCc--eEEEEccC
Confidence 3566999999876 8888888876433322 44555554
No 487
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=94.00 E-value=0.048 Score=44.99 Aligned_cols=47 Identities=9% Similarity=-0.160 Sum_probs=28.6
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI 176 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i 176 (762)
++-|+++||++| ++..+.|+++ ++.+.-++++. +.+...++.+..++
T Consensus 3 i~~y~~~~C~~C-------~~~~~~l~~~-----~i~~~~~~i~~------~~~~~~~~~~~~~~ 49 (82)
T 1fov_A 3 VEIYTKETCPYC-------HRAKALLSSK-----GVSFQELPIDG------NAAKREEMIKRSGR 49 (82)
T ss_dssp EEEEECSSCHHH-------HHHHHHHHHH-----TCCCEEEECTT------CSHHHHHHHHHHSS
T ss_pred EEEEECCCChhH-------HHHHHHHHHC-----CCCcEEEECCC------CHHHHHHHHHHhCC
Confidence 455899999866 8888888876 43333444543 22333445555543
No 488
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.92 E-value=1.7 Score=44.33 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=70.3
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC---CcEEEEecCCCCCCCCcccccccCCcceEEEecC--CCeEEEEeCCCC
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN---GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD--DDCLYIVDSENH 341 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~---G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~--~g~LYVADt~Nh 341 (762)
-.++++++.+..|+++ ..++.|++++.+ ++.+..+-. . -..-..+++++. +..|+.+ +.++
T Consensus 14 v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~---h---------~~~v~~~~~~~~~~~~~l~s~-~~dg 79 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTG---H---------EGPVWRVDWAHPKFGTILASC-SYDG 79 (379)
T ss_dssp EEEEEECSSSSEEEEE-ETTSCEEEEEEETTEEEEEEEECC---C---------SSCEEEEEECCGGGCSEEEEE-ETTS
T ss_pred EEEEEEcCCCCEEEEE-ECCCcEEEEecCCCcceeeeEecC---C---------CCcEEEEEeCCCCCCCEEEEe-ccCC
Confidence 4678888755555544 456778888763 333333321 1 112356777653 4445444 4567
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC--CcEEEEECCCCEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED--DNLLIINRSFETL 419 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d--G~LYVAD~gN~rI 419 (762)
.|+.+|..++....+.-.. +. -...+.+++.++ +.++++-..++.|
T Consensus 80 ~v~iwd~~~~~~~~~~~~~-----------------~~---------------~~~v~~~~~~~~~~~~~l~~~~~d~~i 127 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHA-----------------VH---------------SASVNSVQWAPHEYGPLLLVASSDGKV 127 (379)
T ss_dssp CEEEEEEETTEEEEEEEEC-----------------CC---------------SSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred EEEEEEcCCCceeEeeeec-----------------CC---------------CcceEEEEeCCCCCCCEEEEecCCCcE
Confidence 8999998877533221110 00 113567888887 8888887888999
Q ss_pred EEEECCCC
Q 004302 420 WIMDLASG 427 (762)
Q Consensus 420 ~v~d~~~g 427 (762)
++||..++
T Consensus 128 ~v~d~~~~ 135 (379)
T 3jrp_A 128 SVVEFKEN 135 (379)
T ss_dssp EEEECCTT
T ss_pred EEEecCCC
Confidence 99998776
No 489
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=93.87 E-value=4.5 Score=45.75 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=78.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.-.+|+++| +++++++=+.++.|+++|. +|+.+..+....-.. ...-....+++++|+ +.++++=+..+.|+
T Consensus 192 ~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~-----~~h~~~V~~v~~spd-g~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 192 FVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN-----VAHSGSVFGLTWSPD-GTKIASASADKTIK 264 (611)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS-----CSSSSCEEEEEECTT-SSEEEEEETTSEEE
T ss_pred ceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccc-----cccCCCEEEEEECCC-CCEEEEEeCCCeEE
Confidence 346788997 5667777777889999996 777776653210000 011134678999985 44555556778999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.+|..++........+. .. -....++.. ++..+++-..++.|+.|+.
T Consensus 265 lWd~~~~~~~~~~~~~~----------------~~---------------~~~~~~~~~--~~~~l~s~s~d~~i~~~~~ 311 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGT----------------RI---------------EDQQLGIIW--TKQALVSISANGFINFVNP 311 (611)
T ss_dssp EEETTTTEEEEEEECCS----------------SG---------------GGCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred EEeCCCCceeeeecCCC----------------Cc---------------cceeEEEEE--cCCEEEEEeCCCcEEEEeC
Confidence 99998765433222210 00 012334444 4556666667788888888
Q ss_pred CCCcEEEEEcC
Q 004302 425 ASGEIKEAVKG 435 (762)
Q Consensus 425 ~~g~I~ti~~G 435 (762)
.++.......|
T Consensus 312 ~~~~~~~~~~g 322 (611)
T 1nr0_A 312 ELGSIDQVRYG 322 (611)
T ss_dssp TTTEEEEEECC
T ss_pred CCCCcceEEcC
Confidence 77764444333
No 490
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.85 E-value=2 Score=52.57 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=76.5
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-.++++++.+..|+.+ ..++.|+++|. +|+.+..+.. . -.....+++++++..|..+ +.++.|+.
T Consensus 618 v~~~~~s~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~---h---------~~~v~~~~~s~~~~~l~s~-~~d~~v~v 683 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASC-GADKTLQVFKAETGEKLLDIKA---H---------EDEVLCCAFSSDDSYIATC-SADKKVKI 683 (1249)
T ss_dssp EEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEECC---C---------SSCEEEEEECTTSSEEEEE-ETTSEEEE
T ss_pred EEEEEECCCCCEEEEE-eCCCeEEEEECCCCCEEEEecc---C---------CCCEEEEEEecCCCEEEEE-eCCCeEEE
Confidence 3568899755555444 56778999997 6776665532 1 1235779999855555554 46788999
Q ss_pred EeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC--CCcEEEEECCCCEEEEE
Q 004302 346 ADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE--DDNLLIINRSFETLWIM 422 (762)
Q Consensus 346 id~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~--dG~LYVAD~gN~rI~v~ 422 (762)
+|..++. +.++.+.. ...+.+++.+ ++.++++-..++.|++|
T Consensus 684 wd~~~~~~~~~~~~~~-----------------------------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHS-----------------------------------EQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EETTTCCEEEEEECCS-----------------------------------SCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EECCCCceEEEEcCCC-----------------------------------CcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 9987664 44443221 0234677766 45677777788899999
Q ss_pred ECCCCcEEEE
Q 004302 423 DLASGEIKEA 432 (762)
Q Consensus 423 d~~~g~I~ti 432 (762)
|..++.....
T Consensus 729 d~~~~~~~~~ 738 (1249)
T 3sfz_A 729 DLNQKECRNT 738 (1249)
T ss_dssp ETTSSSEEEE
T ss_pred ECCCcchhhe
Confidence 9988775443
No 491
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.84 E-value=5.5 Score=39.22 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=67.2
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
..++.+ ++. +++-..++.|+++| .++....+-.. -.....+++.+.++.++++-+.++.|+.+|
T Consensus 108 ~~~~~~--~~~-l~~~~~d~~i~~~d-~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 108 CSLSFQ--DGV-VISGSWDKTAKVWK-EGSLVYNLQAH------------NASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EEEEEE--TTE-EEEEETTSEEEEEE-TTEEEEEEECC------------SSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEec--CCE-EEEEeCCCCEEEEc-CCcEEEecccC------------CCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 455554 444 44445678899998 55555444221 122456777662344444445677899998
Q ss_pred CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 348 MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 348 ~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
. ...+.++.+.. -.....+++.+++. +++-..++.|++||..++
T Consensus 172 ~-~~~~~~~~~~~----------------------------------~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 172 N-DKVIKTFSGIH----------------------------------NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp T-TEEEEEECSSC----------------------------------SSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred c-CceEEEEeccC----------------------------------cccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 3 34444442210 11356788888888 555567889999999887
Q ss_pred cEEEE
Q 004302 428 EIKEA 432 (762)
Q Consensus 428 ~I~ti 432 (762)
.....
T Consensus 216 ~~~~~ 220 (313)
T 3odt_A 216 DVLRT 220 (313)
T ss_dssp CEEEE
T ss_pred hhhhh
Confidence 65433
No 492
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=93.80 E-value=6.9 Score=45.50 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=31.8
Q ss_pred eeEEecCCEEEEEECCCCEEEEEECCCCcEE-EEeeccccccCCCcee
Q 004302 482 SSSIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPYWF 528 (762)
Q Consensus 482 sav~~~~g~LYVADt~NhRIrkidl~~~~~s-ti~~s~~G~lG~p~~~ 528 (762)
..+...++.+|+. +..+.++.+|..+|.+. ++.. +.|+.+.|..+
T Consensus 482 g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~~y 527 (677)
T 1kb0_A 482 GTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPT-GTGVVAAPSTY 527 (677)
T ss_dssp CEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEE
T ss_pred cceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeC-CCCcccCCEEE
Confidence 3455677888888 67789999999888765 4443 34666777555
No 493
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=93.76 E-value=0.42 Score=53.52 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=19.1
Q ss_pred EEEcCCC--cEEEEECCCCEEEEEECCCCcEEEE
Q 004302 401 LMKSEDD--NLLIINRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 401 Iavd~dG--~LYVAD~gN~rI~v~d~~~g~I~ti 432 (762)
.+++++| .+|++... +.+.+||.+++...++
T Consensus 115 ~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATE-DRVALYALDGGGLREL 147 (582)
T ss_dssp EEEEECSSCEEEEEECS-SCEEEEEEETTEEEEE
T ss_pred eeeCCCCCeEEEEecCC-CCceEEEccCCcEEEe
Confidence 3455554 45665554 4455889888876665
No 494
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.70 E-value=3.1 Score=43.77 Aligned_cols=120 Identities=7% Similarity=0.019 Sum_probs=68.0
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEc-CCCcEEEEe-cCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC---
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFD-GNGKILDCI-GSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH--- 341 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d-~~G~i~~~i-GsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh--- 341 (762)
-.+|+++|.+. ++++-+.+ .+++++ .+|..+... ..+.+ .....++++|++..|+.+-..+.
T Consensus 179 V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 179 VKDLHFSTDGK-VVAYITGS-SLEVISTVTGSCIARKTDFDKN-----------WSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp CCEEEECTTSS-EEEEECSS-CEEEEETTTCCEEEEECCCCTT-----------EEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred eEEEEEccCCc-eEEeccce-eEEEEEeccCcceeeeecCCCC-----------CCEEEEEEcCCCCEEEEEecCCccee
Confidence 36789997444 44443444 455554 466654322 11110 12467888885555555443332
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
.|+.++............. .. + ....-+.|+++++|.++++=...+.|++
T Consensus 246 ~i~~~~~~~~~~~~~~~~~---~~------------~---------------~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQ---VT------------N---------------RFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEEE---EE------------S---------------SCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EEeecccccceecceeeee---ec------------C---------------CCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 5777776555433221100 00 0 0123467999999998887777889999
Q ss_pred EECCCCcE
Q 004302 422 MDLASGEI 429 (762)
Q Consensus 422 ~d~~~g~I 429 (762)
||..++..
T Consensus 296 wd~~~~~~ 303 (365)
T 4h5i_A 296 VKLKDLSM 303 (365)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99988764
No 495
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.70 E-value=2.3 Score=42.14 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=71.5
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCC-C----cEEEEecCCCCCCCCcccccccCCcceEEEecC-CCeEEEEeC
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGN-G----KILDCIGSCPGFEDGEFESSKLMRPAASFYHKD-DDCLYIVDS 338 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G----~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~-~g~LYVADt 338 (762)
..-.+|++++.+..|+ +=..++.|++++.. + +....+-. .-.....+++++. ++.++++=+
T Consensus 12 ~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVA-TCSSDQHIKVFKLDKDTSNWELSDSWRA------------HDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp SCEEEEEECSSSSEEE-EEETTSEEEEEEECSSSCCEEEEEEEEC------------CSSCEEEEEECCGGGCSEEEEEE
T ss_pred cceeEEEEcCCCCEEE-EeeCCCeEEEEECCCCCCcceecceecc------------CCCcEEEEEEcCCCCCCEEEEEc
Confidence 3456788987544444 44567788888874 2 23333211 1123567888763 244445545
Q ss_pred CCCeEEEEeCCCCE----------EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC--
Q 004302 339 ENHAIRRADMGRRV----------LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-- 406 (762)
Q Consensus 339 ~NhrIRkid~~~g~----------I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-- 406 (762)
.++.|+.+|...+. +.++.+. -...+.+++.++
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~v~~~~~~~~~~ 123 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-----------------------------------KGSLYSVKFAPAHL 123 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCC-----------------------------------SSCEEEEEECCGGG
T ss_pred CCCeEEEEecCCCcccccccCcceeeeeccc-----------------------------------CCceeEEEEcCCCC
Confidence 57789999976542 2222110 113578899888
Q ss_pred CcEEEEECCCCEEEEEECCCCc
Q 004302 407 DNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~~g~ 428 (762)
+.++++-..++.|++||..++.
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTT
T ss_pred CcEEEEecCCCcEEEecCCChH
Confidence 8878777788999999987664
No 496
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.69 E-value=1.5 Score=45.20 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=69.0
Q ss_pred cceEEEcc-CCCEEE-EEeCCC----cEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe--C
Q 004302 267 PGCISADE-SGNRLF-LSDSNH----HRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD--S 338 (762)
Q Consensus 267 P~gIAVD~-s~g~LY-VADs~n----hrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD--t 338 (762)
...++++| .++.|+ +++... .+|++++.++.-...+-... .-..+..++++|++..|+++. .
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~----------~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA----------EGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC----------TTEEEEEEEECTTSSCEEEEEEET
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC----------CCccccceEECCCCCEEEEEecCC
Confidence 35567776 345454 554333 58888887553222221110 011255678888776666553 2
Q ss_pred CCCe--EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEEC-
Q 004302 339 ENHA--IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINR- 414 (762)
Q Consensus 339 ~Nhr--IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~- 414 (762)
+... |+++|+.++....+.... + . .+++++ +|.+++...
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~-----------------~----------------~----~~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVMP-----------------P----------------C----SHLMSNFDGSLMVGDGC 302 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEECC-----------------S----------------E----EEEEECSSSSEEEEEEC
T ss_pred CCccceEEEEECCCCCeEEeeeCC-----------------C----------------C----CCCccCCCCceEEEecC
Confidence 3444 999998877665553110 0 0 156667 887776543
Q ss_pred ---------------CCCEEEEEECCCCcEEEE
Q 004302 415 ---------------SFETLWIMDLASGEIKEA 432 (762)
Q Consensus 415 ---------------gN~rI~v~d~~~g~I~ti 432 (762)
++..|+++|.+++.+..+
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 457899999988776544
No 497
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.66 E-value=1.1 Score=45.41 Aligned_cols=119 Identities=10% Similarity=-0.018 Sum_probs=78.8
Q ss_pred cceEEEccCC---CEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 267 PGCISADESG---NRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 267 P~gIAVD~s~---g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
-..++.++.. +.++++=..++.|+++|. +++.+..+-.. -.....+++++.++.++++=+.++.
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH------------GNAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC------------CSCEEEEEECSSCTTEEEEEETTSC
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC------------CCcEEEEEECCCCCCEEEEEeCCCe
Confidence 3567777542 456666667889999997 57766655321 1235778888734455555556788
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|+.+|..++........- .+ .-.....++++++|..+++-..++.|++|
T Consensus 140 i~iwd~~~~~~~~~~~~~----~~---------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 188 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGV----EG---------------------------HRDEVLSADYDLLGEKIMSCGMDHSLKLW 188 (366)
T ss_dssp EEEEETTTTEEEEEECST----TS---------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEeecCeEEEEeccc----cc---------------------------ccCceeEEEECCCCCEEEEecCCCCEEEE
Confidence 999999877654443210 00 01246789999998888777788999999
Q ss_pred ECCCCc
Q 004302 423 DLASGE 428 (762)
Q Consensus 423 d~~~g~ 428 (762)
|..++.
T Consensus 189 d~~~~~ 194 (366)
T 3k26_A 189 RINSKR 194 (366)
T ss_dssp ESCSHH
T ss_pred ECCCCc
Confidence 987654
No 498
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.58 E-value=7.5 Score=39.95 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=49.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-..|++++ ++.+.++-+..+.|+++|. +|+.+..+-. . -..-..++++|++..|+.+. ..+.|+.
T Consensus 79 V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---h---------~~~v~~v~~sp~~~~l~s~~-~d~~i~~ 144 (343)
T 2xzm_R 79 VSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVG---H---------QSEVYSVAFSPDNRQILSAG-AEREIKL 144 (343)
T ss_dssp EEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEEC---C---------CSCEEEEEECSSTTEEEEEE-TTSCEEE
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC---C---------CCcEEEEEECCCCCEEEEEc-CCCEEEE
Confidence 35688886 4556666677899999997 5776655422 1 11246789998655555554 5678999
Q ss_pred EeCCCCEEEE
Q 004302 346 ADMGRRVLET 355 (762)
Q Consensus 346 id~~~g~I~T 355 (762)
+|..+....+
T Consensus 145 wd~~~~~~~~ 154 (343)
T 2xzm_R 145 WNILGECKFS 154 (343)
T ss_dssp EESSSCEEEE
T ss_pred EeccCCceee
Confidence 9987555443
No 499
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.56 E-value=2.9 Score=44.27 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=74.6
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC----CCcEEEEecCC--CCCCCCccccc-ccCCcceEE--EecCCCeEEEEe
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG----NGKILDCIGSC--PGFEDGEFESS-KLMRPAASF--YHKDDDCLYIVD 337 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~----~G~i~~~iGsG--~G~~DG~~~~a-~fn~P~GIa--vd~~~g~LYVAD 337 (762)
..+|++++. +.++++=..++.|+++|. +|+........ .... +... .-.....++ .++ ++.++++-
T Consensus 114 v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 188 (437)
T 3gre_A 114 VTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN---LKNFGKNEYAVRMRAFVNE-EKSLLVAL 188 (437)
T ss_dssp EEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE---GGGGSSCCCEEEEEEEECS-SCEEEEEE
T ss_pred EEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE---ccCcccccCceEEEEEEcC-CCCEEEEE
Confidence 467888864 445555556778888876 56555433210 0000 0000 001123333 334 45666666
Q ss_pred CCCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCC
Q 004302 338 SENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSF 416 (762)
Q Consensus 338 t~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN 416 (762)
+.++.|+.+|+.++. +.++.+.. .-...+.+++++++.++++-..+
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------h~~~v~~~~~s~~~~~l~s~~~d 235 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSP---------------------------------RHGAVSSICIDEECCVLILGTTR 235 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCG---------------------------------GGCCEEEEEECTTSCEEEEEETT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCC---------------------------------CCCceEEEEECCCCCEEEEEcCC
Confidence 678899999987653 44443210 01146789999999888888888
Q ss_pred CEEEEEECCCCcEE
Q 004302 417 ETLWIMDLASGEIK 430 (762)
Q Consensus 417 ~rI~v~d~~~g~I~ 430 (762)
+.|++||..++...
T Consensus 236 g~i~iwd~~~~~~~ 249 (437)
T 3gre_A 236 GIIDIWDIRFNVLI 249 (437)
T ss_dssp SCEEEEETTTTEEE
T ss_pred CeEEEEEcCCccEE
Confidence 99999999887643
No 500
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.56 E-value=5.6 Score=42.40 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=66.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 271 SADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 271 AVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
++++.++.++++ ..++.|+++|. +++.+..+... -.....+++++++..|+ +-+.++.|+.+|..
T Consensus 275 ~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 275 TVSGHGNIVVSG-SYDNTLIVWDVAQMKCLYILSGH------------TDRIYSTIYDHERKRCI-SASMDTTIRIWDLE 340 (464)
T ss_dssp EEEEETTEEEEE-ETTSCEEEEETTTTEEEEEECCC------------SSCEEEEEEETTTTEEE-EEETTSCEEEEETT
T ss_pred EEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEecCC------------CCCEEEEEEcCCCCEEE-EEeCCCcEEEEECC
Confidence 344434444444 46778999997 56666555321 12356789998555554 45567789999997
Q ss_pred CCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 350 RRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 350 ~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
++.. .++.+.. .....++++ +..+++-...+.|++||..++.
T Consensus 341 ~~~~~~~~~~h~-----------------------------------~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 341 NGELMYTLQGHT-----------------------------------ALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp TTEEEEEECCCS-----------------------------------SCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CCcEEEEEeCCC-----------------------------------CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 6654 3432210 023456665 4566666678899999998765
Done!