Query 004303
Match_columns 762
No_of_seqs 188 out of 749
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2o_A SEC23, protein transpor 100.0 3E-152 9E-157 1350.4 69.1 732 2-750 1-764 (768)
2 2nut_A Protein transport prote 100.0 5E-150 2E-154 1329.4 72.2 722 1-749 5-764 (769)
3 3efo_B SEC24 related gene fami 100.0 1E-134 4E-139 1194.8 56.3 671 6-753 43-769 (770)
4 3eh1_A Protein transport prote 100.0 9E-134 3E-138 1182.5 62.7 660 6-750 36-750 (751)
5 3eh2_A Protein transport prote 100.0 1E-133 5E-138 1185.1 56.9 670 6-753 39-765 (766)
6 1pcx_A Protein transport prote 100.0 4E-129 1E-133 1154.7 59.4 660 6-750 59-809 (810)
7 1m2v_B SEC24, protein transpor 100.0 3E-129 1E-133 1159.1 56.4 660 6-750 175-925 (926)
8 2yrc_A Protein transport prote 99.6 5.8E-17 2E-21 126.0 2.1 52 54-105 5-58 (59)
9 4fx5_A VON willebrand factor t 99.1 2.4E-07 8.3E-12 103.8 37.7 315 129-558 77-408 (464)
10 3ibs_A Conserved hypothetical 98.6 3.5E-06 1.2E-10 84.3 20.1 157 128-384 10-198 (218)
11 4b4t_W RPN10, 26S proteasome r 98.3 6.2E-06 2.1E-10 84.8 14.0 147 131-376 5-163 (268)
12 1q0p_A Complement factor B; VO 98.1 6.8E-05 2.3E-09 75.0 17.7 172 128-385 14-206 (223)
13 1ijb_A VON willebrand factor; 98.1 9.9E-05 3.4E-09 73.0 18.5 163 128-386 12-183 (202)
14 1v7p_C Integrin alpha-2; snake 98.1 5.7E-05 2E-09 74.5 16.0 162 128-386 5-183 (200)
15 2b2x_A Integrin alpha-1; compu 98.1 8.4E-05 2.9E-09 74.7 17.0 161 128-386 21-199 (223)
16 1atz_A VON willebrand factor; 98.0 0.00031 1.1E-08 68.4 19.5 158 128-386 4-172 (189)
17 1n3y_A Integrin alpha-X; alpha 98.0 6.9E-05 2.4E-09 73.5 13.6 163 128-386 8-181 (198)
18 2x31_A Magnesium-chelatase 60 98.0 1.2E-06 4.1E-11 85.8 0.7 110 128-306 4-118 (189)
19 1pt6_A Integrin alpha-1; cell 98.0 0.00011 3.8E-09 73.2 15.2 162 128-386 6-184 (213)
20 1mf7_A Integrin alpha M; cell 97.9 6.8E-05 2.3E-09 73.5 12.5 163 128-386 4-177 (194)
21 2x5n_A SPRPN10, 26S proteasome 97.9 0.00018 6.1E-09 70.7 15.3 144 131-374 4-159 (192)
22 2odp_A Complement C2; C3/C5 co 97.9 7.7E-05 2.6E-09 84.7 14.6 177 128-397 8-210 (509)
23 1shu_X Anthrax toxin receptor 97.9 0.00041 1.4E-08 66.8 17.3 160 128-385 5-168 (182)
24 1rrk_A Complement factor B; BB 97.9 0.00022 7.7E-09 80.5 17.2 186 130-397 2-202 (497)
25 4hqf_A Thrombospondin-related 97.8 0.00038 1.3E-08 72.6 16.0 166 128-387 20-198 (281)
26 1mjn_A Integrin alpha-L; rossm 97.7 0.00039 1.3E-08 67.2 14.4 154 129-386 2-167 (179)
27 4hqo_A Sporozoite surface prot 97.7 0.00072 2.5E-08 69.9 15.6 164 128-385 17-193 (266)
28 3n2n_F Anthrax toxin receptor 97.6 0.0022 7.7E-08 61.7 16.6 157 128-383 6-168 (185)
29 3hrz_D Complement factor B; se 97.5 0.00022 7.6E-09 84.8 11.2 177 129-385 243-434 (741)
30 3zqk_A VON willebrand factor; 97.3 0.0034 1.2E-07 61.6 15.1 49 128-176 20-73 (199)
31 1kcq_A Gelsolin, brevin, ADF, 97.3 0.00042 1.4E-08 60.8 7.1 86 629-730 2-90 (104)
32 2xgg_A Microneme protein 2; A/ 97.3 0.0068 2.3E-07 58.2 16.1 143 128-367 16-168 (178)
33 1jey_B KU80; double-strand DNA 97.0 0.0021 7E-08 73.8 10.3 144 130-358 8-168 (565)
34 3k6s_A Integrin alpha-X; cell 97.0 0.0016 5.6E-08 80.2 9.9 163 128-386 129-302 (1095)
35 1svq_A Severin; actin-binding; 96.7 0.0024 8.2E-08 56.9 6.3 87 628-730 11-101 (114)
36 2fh1_A Gelsolin; calcium, cont 95.8 0.0062 2.1E-07 65.3 4.8 48 628-675 227-279 (344)
37 3t3p_B Integrin beta-3; integr 95.4 1.7 5.8E-05 47.7 22.2 209 128-381 110-333 (472)
38 3fcs_B Integrin beta-3; beta p 95.4 0.53 1.8E-05 54.7 19.3 211 128-383 110-335 (690)
39 3fg7_A Villin-1; actin binding 95.3 0.013 4.5E-07 63.8 5.3 48 628-675 281-332 (398)
40 1j72_A Macrophage capping prot 95.1 0.029 9.9E-07 60.1 7.0 78 628-721 246-334 (347)
41 3fg6_A Adseverin, scinderin; C 94.8 0.012 4E-07 63.7 2.8 48 628-675 268-320 (371)
42 3v4v_B Integrin beta-7; cell a 94.7 3.6 0.00012 45.4 22.4 208 128-381 131-352 (503)
43 1jey_A KU70; double-strand DNA 94.7 0.72 2.5E-05 53.1 17.7 69 267-360 139-208 (609)
44 2ww8_A RRGA, cell WALL surface 94.7 0.13 4.3E-06 61.8 11.6 48 128-175 223-280 (893)
45 3vi3_B Integrin beta-1; beta p 94.0 4.3 0.00015 44.3 20.7 192 128-365 121-325 (454)
46 1j72_A Macrophage capping prot 93.9 0.091 3.1E-06 56.2 7.5 86 629-730 135-223 (347)
47 1d0n_A Horse plasma gelsolin; 93.6 0.061 2.1E-06 63.4 5.9 50 626-675 610-664 (729)
48 3rag_A Uncharacterized protein 92.7 0.11 3.8E-06 52.0 5.3 46 128-173 133-182 (242)
49 1d0n_A Horse plasma gelsolin; 91.7 0.36 1.2E-05 56.8 9.0 87 628-730 132-221 (729)
50 2iue_A Pactolus I-domain; memb 89.3 10 0.00035 37.0 15.5 45 129-173 3-51 (212)
51 1yvr_A RO autoantigen, 60-kDa 88.1 0.92 3.2E-05 51.4 8.2 32 268-304 444-475 (538)
52 2fh1_A Gelsolin; calcium, cont 86.6 0.55 1.9E-05 50.0 4.9 46 629-674 124-173 (344)
53 3k6s_B Integrin beta-2; cell r 84.9 2.2 7.6E-05 49.4 9.2 208 128-382 103-324 (687)
54 2j9u_B VPS36, vacuolar protein 84.1 0.38 1.3E-05 38.4 1.6 20 78-97 15-34 (76)
55 3fg6_A Adseverin, scinderin; C 79.3 1.2 4.1E-05 47.9 3.9 46 629-674 165-215 (371)
56 2a20_A Regulating synaptic mem 74.0 0.67 2.3E-05 35.0 0.1 29 57-89 32-60 (62)
57 2gmg_A Hypothetical protein PF 70.6 1.3 4.4E-05 38.0 1.0 35 57-96 66-100 (105)
58 1gh9_A 8.3 kDa protein (gene M 68.5 1.7 5.7E-05 34.7 1.2 31 56-92 2-32 (71)
59 2nvo_A RO sixty-related protei 61.3 14 0.00048 41.5 7.5 32 268-304 440-471 (535)
60 4gat_A Nitrogen regulatory pro 61.0 3.3 0.00011 32.5 1.6 33 56-89 7-39 (66)
61 1pft_A TFIIB, PFTFIIBN; N-term 59.9 8.5 0.00029 28.1 3.6 29 58-89 5-33 (50)
62 3fg7_A Villin-1; actin binding 58.0 2.1 7.2E-05 46.3 0.0 46 629-674 178-227 (398)
63 3rag_A Uncharacterized protein 57.8 22 0.00075 35.4 7.3 44 340-383 29-76 (242)
64 1vq8_Z 50S ribosomal protein L 56.9 5.7 0.0002 32.7 2.4 30 58-91 27-56 (83)
65 2vut_I AREA, nitrogen regulato 49.5 3.9 0.00013 29.1 0.3 31 58-89 1-31 (43)
66 6rxn_A Rubredoxin; electron tr 49.3 3.5 0.00012 29.9 -0.1 31 59-89 5-39 (46)
67 1s24_A Rubredoxin 2; electron 46.0 4 0.00014 33.8 -0.2 33 57-89 34-77 (87)
68 1yk4_A Rubredoxin, RD; electro 42.1 5.4 0.00019 29.7 0.0 11 79-89 34-44 (52)
69 2csz_A Synaptotagmin-like prot 39.6 8.9 0.0003 30.8 0.9 31 59-89 43-73 (76)
70 2apo_B Ribosome biogenesis pro 39.2 18 0.00061 27.7 2.5 35 56-100 4-40 (60)
71 1gnf_A Transcription factor GA 39.1 5 0.00017 29.1 -0.6 31 58-89 4-34 (46)
72 1e8j_A Rubredoxin; iron-sulfur 38.0 6.5 0.00022 29.2 -0.1 9 80-88 36-44 (52)
73 3j21_g 50S ribosomal protein L 37.5 11 0.00037 27.9 1.0 29 57-93 13-41 (51)
74 1dx8_A Rubredoxin; electron tr 36.8 7.8 0.00027 30.8 0.2 32 58-89 7-49 (70)
75 4rxn_A Rubredoxin; electron tr 36.7 7.7 0.00026 29.1 0.1 30 60-89 5-45 (54)
76 1yuz_A Nigerythrin; rubrythrin 36.0 12 0.00039 36.4 1.3 26 58-90 171-196 (202)
77 1x0t_A Ribonuclease P protein 35.1 13 0.00043 32.9 1.3 35 59-93 66-107 (120)
78 2v3b_B Rubredoxin 2, rubredoxi 34.9 7.7 0.00026 29.2 -0.1 10 79-88 35-44 (55)
79 3j20_Y 30S ribosomal protein S 34.8 19 0.00065 26.4 2.0 26 58-89 19-46 (50)
80 2kn9_A Rubredoxin; metalloprot 34.3 7.8 0.00027 31.6 -0.2 33 57-89 26-69 (81)
81 2hgo_A CASSIICOLIN; toxin, dis 33.6 16 0.00056 22.1 1.2 26 60-86 2-27 (27)
82 1w7p_D VPS36P, YLR417W; ESCRT- 28.0 12 0.00043 41.9 0.0 20 78-97 115-134 (566)
83 4hc9_A Trans-acting T-cell-spe 27.1 13 0.00046 32.4 0.1 30 58-88 5-34 (115)
84 2zet_C Melanophilin; complex, 27.1 11 0.00038 34.8 -0.5 33 59-91 86-119 (153)
85 2kdx_A HYPA, hydrogenase/ureas 26.9 20 0.0007 31.4 1.2 28 58-91 73-101 (119)
86 1zbd_B Rabphilin-3A; G protein 26.3 21 0.00073 32.1 1.2 33 59-91 73-109 (134)
87 2dj7_A Actin-binding LIM prote 25.4 77 0.0026 25.2 4.4 34 56-89 13-51 (80)
88 2lk0_A RNA-binding protein 5; 25.0 20 0.00068 23.6 0.6 14 79-92 4-17 (32)
89 2k3r_A Ribonuclease P protein 24.3 21 0.00071 31.6 0.7 35 59-93 61-102 (123)
90 3dfx_A Trans-acting T-cell-spe 22.8 10 0.00036 29.3 -1.3 31 58-89 7-37 (63)
91 1dl6_A Transcription factor II 22.5 51 0.0018 24.8 2.5 29 58-89 11-39 (58)
92 1nj3_A NPL4; NZF domain, rubre 21.8 29 0.001 22.4 0.9 16 78-93 4-19 (31)
93 1b3t_A Protein (nuclear protei 20.9 77 0.0026 27.7 3.5 34 142-175 109-145 (147)
94 1wii_A Hypothetical UPF0222 pr 20.2 24 0.00081 29.1 0.2 15 79-93 22-36 (85)
No 1
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=2.5e-152 Score=1350.43 Aligned_cols=732 Identities=41% Similarity=0.749 Sum_probs=669.3
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCC--CCceecCcceEEcCCc
Q 004303 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (762)
Q Consensus 2 ~~~~~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~--C~ayiNp~~~~~~~~~ 79 (762)
|||+++|+++|||+|||+||.|++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 89999999999999999999999999999999999999999754 68999999999999 9999999999999999
Q ss_pred eEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccEEEecCCCCCCCCCCcEEEEEEECCCChhHHHHHHHHHHHHhhcC
Q 004303 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (762)
Q Consensus 80 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~p~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l 159 (762)
+|+||||++.|++|++|.++++.++||||. ++||||++|+++| .||+|+||||+|.+++++++++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL~--~~tvEy~~p~~~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLELQ--STTIEYITNKPVT---VPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGGT--CSEEEEECSCCCC---SCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhhc--cCCEEEECCCCCC---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888889999997 9999999999888 99999999999999999999999999999999
Q ss_pred CCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHh-hcccCCCCCCCccccCc-cCCCCc--ccccc
Q 004303 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGV-RDGLSS--DTIAR 235 (762)
Q Consensus 160 p~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~-~~~~~~~~p~~~~~~~~-~~~~~~--~pl~~ 235 (762)
|++++|||||||+.||||+++ .+ .+++++||+|+++++.+++++++ ++.+. ..++. .+.. ...+.+ .|.++
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~-~~~~~~V~~g~k~~~~~q~~~~l~~l~~~-~~~~~--~~~~~~~~f~p~~~~~~~ 226 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SE-TIDRCNVFRGDREYQLEALTEMLTGQKPT-GPGGA--ASHLPNAMNKVTPFSLNR 226 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SS-SSEEEEEEETTSCCCHHHHHHHHHSCCCC------------------CCSSSGGG
T ss_pred CCCCEEEEEEECCEEEEEECC-CC-CCcceeeecCCccccHHHHHHHHhhcccc-ccCCc--cccccccccccccCCccc
Confidence 999999999999999999999 66 58999999999999999999998 76431 00000 0000 000011 22489
Q ss_pred eEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCCCC
Q 004303 236 FLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSE 315 (762)
Q Consensus 236 ~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~ 315 (762)
||+|++||++.|+++|++|++++|++++++++.||+|+||++|..+|++++++.||||++|++|+||.|||+|+.++.++
T Consensus 227 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~ 306 (768)
T 1m2o_A 227 FFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKD 306 (768)
T ss_dssp GSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTS
T ss_pred eeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred CccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEEeCCCChhhhHHHHHH
Q 004303 316 PIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRR 395 (762)
Q Consensus 316 ~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~~~~f~~~~~~~~l~~ 395 (762)
++|+|+|++|+++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++++|
T Consensus 307 ~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r 386 (768)
T 1m2o_A 307 PLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLR 386 (768)
T ss_dssp CCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHH
T ss_pred ccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hccccCccceeeeEEEEEecCCceEEeEEcCccccCC-CCCCcccccccCCCCCceeeecCCCCceEEEEEEEecCC
Q 004303 396 VF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKE 473 (762)
Q Consensus 396 ~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~-~~~~isd~~~g~~~~~~~~l~~~~~~~s~~~~~~~~~~~ 473 (762)
.| ++..+++.+||+|+||||||+|++|++++||+++.++ +++++||+++|.++++.|+++++++++||+|+|+++++.
T Consensus 387 ~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~~ 466 (768)
T 1m2o_A 387 LFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTA 466 (768)
T ss_dssp TTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC-
T ss_pred HHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEecccc
Confidence 99 5555556799999999999999999999999998876 888999999999999999999999999999999999986
Q ss_pred CCcc-----cccC--CCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcC
Q 004303 474 IPDA-----TLQS--TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEIE 546 (762)
Q Consensus 474 ~~~~-----~~~~--~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~llak~a~~~~~~~ 546 (762)
...+ ++ . ....+|||+|++||+.+|+|||||||+++|++++ ++.++|+++|+||++++|+|+|+.++.++
T Consensus 467 ~~~~~~~~~~l-~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~--~~~~v~~~~Dqea~~~llar~av~~~~~~ 543 (768)
T 1m2o_A 467 ANSNPMMSAPG-SADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPF--GTPAIAASFDQEAAAVLMARIAVHKAETD 543 (768)
T ss_dssp -----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECT--TCHHHHHTBCHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccc-cccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCc--cHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3100 00 1 3578999999999999999999999999999962 37899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhcccccCCCCCcCCCcccccHHHHHHHHhcccCcCCCCCChHHHHHHHHHHccCCHHHHHH
Q 004303 547 AEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVV 626 (762)
Q Consensus 547 ~~~~~~~~l~~~l~~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~~~~ 626 (762)
+..|+|+||+++|++++++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++.++++++.+++.
T Consensus 544 ~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~l~ 623 (768)
T 1m2o_A 544 DGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLI 623 (768)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceecccCCCCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHHH
Q 004303 627 MIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMK 706 (762)
Q Consensus 627 ~iyP~L~~~~~~~~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~~ 706 (762)
||||+||++|.++.|++++||.++|+++||||||+|+.++||+|+++++|++++|++++++++++.++++|+.++++|++
T Consensus 624 ~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~a~~i~~ 703 (768)
T 1m2o_A 624 MIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLV 703 (768)
T ss_dssp HHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHHHHHHHh
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCchhhhHH-hh--hcc--------------CCCcHhhHhhhhccccc
Q 004303 707 ERFPVPRLVICDQHGSQVGSYH-NV--QQM--------------GGSLWMIVVCYLLSPGK 750 (762)
Q Consensus 707 ~R~~~p~~~~~~~g~sq~rf~~-~l--~~~--------------~~~~y~d~l~~~~~~~~ 750 (762)
+|+|+|++++++||+||+||+. .| +.. +..||.+||+|||..++
T Consensus 704 ~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v 764 (768)
T 1m2o_A 704 DRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAV 764 (768)
T ss_dssp TCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHC
T ss_pred cCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999994 44 321 23799999999998654
No 2
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=4.7e-150 Score=1329.44 Aligned_cols=722 Identities=47% Similarity=0.869 Sum_probs=664.0
Q ss_pred CCCcc----cccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCC--CCceecCcceE
Q 004303 1 MTEFM----DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIV 74 (762)
Q Consensus 1 ~~~~~----~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~--C~ayiNp~~~~ 74 (762)
||||. +||+++|||+|||+||.|++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~ 80 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQYEPVLCSRTTCRAVLNPLCQV 80 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBCSCCCBCSSTTCCCBCCTTSEE
T ss_pred ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCCCCCCcCCCCCCCeEECCceEE
Confidence 78876 4799999999999999999999999999999999999764 68999999999999 99999999999
Q ss_pred EcCCceEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccEEEecCCCCCCCCCCcEEEEEEECCCChhHHHHHHHHHHH
Q 004303 75 DFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQ 154 (762)
Q Consensus 75 ~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~p~~~~~p~~vFvID~s~~~~~l~~~~~~l~~ 154 (762)
+.+|++|+||||++.|++|++|.+++..++||||.|+++||||++|++.| .||+|+||||+|.+++++++++++|++
T Consensus 81 ~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p---~pp~~vFvIDvS~~a~~l~~l~~si~~ 157 (769)
T 2nut_A 81 DYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQ---MPLIFLYVVDTCMEDEDLQALKESMQM 157 (769)
T ss_dssp ETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCC---CCCEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred eCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCC---CCCEEEEEEECCccHHHHHHHHHHHHH
Confidence 99999999999999999999998888889999996669999999998878 999999999999999999999999999
Q ss_pred HhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHhhcccC---C-----CCCCCccccCccC
Q 004303 155 AIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIK---K-----PKPSTGVIAGVRD 226 (762)
Q Consensus 155 ~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~~~~~~---~-----~~p~~~~~~~~~~ 226 (762)
+|+.||++++|||||||+.||||+++ .+ .+++++||+|+++++.+++++++++.+. . +++
T Consensus 158 ~L~~Lp~~~~VGlITf~~~v~~y~l~-~~-~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~---------- 225 (769)
T 2nut_A 158 SLSLLPPTALVGLITFGRMVQVHELG-CE-GISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQ---------- 225 (769)
T ss_dssp HHTTSCTTCEEEEEEESSEEEEEESS-CC-SSCEEEEEETTSCCCSHHHHHHHC--------------------------
T ss_pred HHHhCCCCceEEEEEeCCEEEEEeCC-CC-CCccceeecCCccccHHHHHHHhCCCCccccccccccccc----------
Confidence 99999999999999999999999999 66 6889999999999999999998866430 0 111
Q ss_pred CCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCc
Q 004303 227 GLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPA 306 (762)
Q Consensus 227 ~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~GpG 306 (762)
+ ..|+++||+|++||++.|+++|++|+++.|++++++++.||+|+||++|..+|+..+++.||||++|++|+||.|||
T Consensus 226 -f-~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG 303 (769)
T 2nut_A 226 -Q-PPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPG 303 (769)
T ss_dssp -----CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSS
T ss_pred -C-CCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCC
Confidence 0 14568999999999999999999999988988999999999999999999999987778999999999999999999
Q ss_pred ccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEEeCCCCh
Q 004303 307 AIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGH 386 (762)
Q Consensus 307 ~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~~~~f~~ 386 (762)
+|+.++.++++|+|+|++|+++++++++.+||+++|++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.
T Consensus 304 ~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~ 383 (769)
T 2nut_A 304 MVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNT 383 (769)
T ss_dssp CCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSS
T ss_pred CCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCch
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHh-hccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceeeecCCCCceEEE
Q 004303 387 AVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCL 465 (762)
Q Consensus 387 ~~~~~~l~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l~~~~~~~s~~~ 465 (762)
++|.++|++.| ++..+++.+||+|+||||||+|++|++++||+++.+++++++||+++|.++++.|+++++++++||+|
T Consensus 384 ~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v 463 (769)
T 2nut_A 384 SLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAI 463 (769)
T ss_dssp HHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEE
T ss_pred hhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEE
Confidence 99999999999 55555567999999999999999999999999999889999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCH---HHHHhccCHHHHHHHHHHHHHHH
Q 004303 466 VFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSV---QDLIAGFDQEAAAVVMARLVSFK 542 (762)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~---~~v~~~~D~ea~~~llak~a~~~ 542 (762)
+|++++.... ++ .....+|||+|++||+.+|+|||||||+++|++++ . .++|+++|+||++++|+|+++.+
T Consensus 464 ~f~~~~~~~~--~l-~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~---~~~~~~v~~~~Dqea~~~llar~a~~~ 537 (769)
T 2nut_A 464 YFEVVNQHNA--PI-PQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADA---QTQIQNIAASFDQEAAAILMARLAIYR 537 (769)
T ss_dssp EEEEC-------------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCG---GGHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred EEEecCcccc--cc-CCCCeEEEEEEEEEECCCCCEEEEEEeecccccCC---cccHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999997421 11 24578999999999999999999999999999984 5 59999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHhcccccCCCCCcCCCcccccHHHHHHHHhcccCcCCCCCChHHHHHHHHHHccCCHH
Q 004303 543 MEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVT 622 (762)
Q Consensus 543 ~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~ 622 (762)
+.+++..|+|+||+++++++|++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++.++++++.
T Consensus 538 ~~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~ 617 (769)
T 2nut_A 538 AETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLT 617 (769)
T ss_dssp HTTC---CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHH
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccceecccCCCCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHH
Q 004303 623 NSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAG 702 (762)
Q Consensus 623 ~~~~~iyP~L~~~~~~~~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~ 702 (762)
+++.||||+||++|.++.|++++||+++|+++||||||+|++++||+|+++++|++++|+++|+|+.++++|++|+.+++
T Consensus 618 ~~~~~iyP~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~ 697 (769)
T 2nut_A 618 QSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQ 697 (769)
T ss_dssp HHHHHHSCEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCchhhhHHhh-h-----cc----C----------CCcHhhHhhhhcccc
Q 004303 703 VIMKERFPVPRLVICDQHGSQVGSYHNV-Q-----QM----G----------GSLWMIVVCYLLSPG 749 (762)
Q Consensus 703 ~i~~~R~~~p~~~~~~~g~sq~rf~~~l-~-----~~----~----------~~~y~d~l~~~~~~~ 749 (762)
+|+++|+|+|++++++||+||+||+... . +. | ..|+..|+-||+.-+
T Consensus 698 ~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~ 764 (769)
T 2nut_A 698 EILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA 764 (769)
T ss_dssp HHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHh
Confidence 9999999999999999999999999766 1 11 1 358999999997654
No 3
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=1.1e-134 Score=1194.80 Aligned_cols=671 Identities=19% Similarity=0.306 Sum_probs=592.8
Q ss_pred cccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCC---CCCCcccCCCCceecCcceEEcCCceEE
Q 004303 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPIL---PYAPLRCRTCRSILNPFSIVDFAAKIWI 82 (762)
Q Consensus 6 ~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~---~~~p~RC~~C~ayiNp~~~~~~~~~~w~ 82 (762)
-|++|+|||+|||+||.|++++++++||||++|+||++..++|.++|++ +++|+||++|||||||||+|+++|++|+
T Consensus 43 gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 122 (770)
T 3efo_B 43 GNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQ 122 (770)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEE
T ss_pred CCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEE
Confidence 3999999999999999999999999999999999999988777778887 4579999999999999999999999999
Q ss_pred ecCCCCCCCCCcCC-CCCCCC------CCCccccCCCccEEEecCC------CCCCCCCCcEEEEEEECCCChhH---HH
Q 004303 83 CPFCFQRNHFPPHY-ASITDD------NLPAELFPQYTTIEYEPPG------PGEKSSVPPVFMFVVDTCIIEEE---MS 146 (762)
Q Consensus 83 C~~C~~~N~~p~~y-~~~~~~------~~~pEL~~~~~tvey~~~~------~~p~~~~~p~~vFvID~s~~~~~---l~ 146 (762)
||||+..|++|++| ++++.. ++||||. ++||||++|. ++| .||+|+||||+|.++++ ++
T Consensus 123 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~tvEf~ap~eY~~~~~~p---~pp~y~FvIDvs~~av~sg~l~ 197 (770)
T 3efo_B 123 CGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELS--LGSYEYVATLDYCRKSKPP---NPPAFIFMIDVSYSNIKNGLVK 197 (770)
T ss_dssp CTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHH--CSEEEEECCGGGSGGGSCC---CCCEEEEEEECSHHHHHTTHHH
T ss_pred eccccccCCCchHhhccccccccccccccCcccc--cCceeeecCHHHhccCCCC---CCcEEEEEEEcchhhccchHHH
Confidence 99999999999999 566533 4799998 9999999984 456 89999999999999875 99
Q ss_pred HHHHHHHHHhhcCCCC-------cEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHhhcccCCCCCCCc
Q 004303 147 FLKSALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTG 219 (762)
Q Consensus 147 ~~~~~l~~~l~~lp~~-------~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~~~~~~~~~p~~~ 219 (762)
+++++|+++|+.||++ ++|||||||+.||||+++ +.+++++++|++ |++|+|
T Consensus 198 ~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~q~q~~vv~--------d~~d~f------------ 256 (770)
T 3efo_B 198 LICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK-SNLAQPQMMVVT--------DVGEVF------------ 256 (770)
T ss_dssp HHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC-TTCSSCEEEEEC--------CTTSCC------------
T ss_pred HHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC-CcccCceEEEec--------cccccc------------
Confidence 9999999999999975 899999999999999999 776889999973 455544
Q ss_pred cccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEec
Q 004303 220 VIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298 (762)
Q Consensus 220 ~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~s 298 (762)
+|+ ++||+|++||++.|+++|++|+++ ++..+...+|+|+||++|..+++. .+.||||++|++
T Consensus 257 -----------~P~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s 320 (770)
T 3efo_B 257 -----------VPLLDGFLVNYQESQSVIHNLLDQIPDM---FADSNENETVFAPVIQAGMEALKA--ADCPGKLFIFHS 320 (770)
T ss_dssp -----------CCCSSSSSBCTTTTHHHHHHHHHHHHHH---HHTCCCCCCCCHHHHHHHHHHHHH--HTCCEEEEEEEC
T ss_pred -----------CCCccceeeeHHHHHHHHHHHHHhhHhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEec
Confidence 454 899999999999999999999873 444555788999999999999984 258999999999
Q ss_pred CCCC-CCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccce
Q 004303 299 GPST-EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGL 377 (762)
Q Consensus 299 g~pt-~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~ 377 (762)
|+|+ .|||+|+.+++++.+|+ +|| .++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 321 ~lP~t~GpG~l~~r~~~~~~~t----~ke-~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~ 395 (770)
T 3efo_B 321 SLPTAEAPGKLKNRDDKKLVNT----DKE-KILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGT 395 (770)
T ss_dssp SCCCSSSTTCCCCCCCCCCSSC----SCG-GGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCC
T ss_pred CCCCcCCCccccccccccccCC----cch-hhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCce
Confidence 9666 89999999999888875 344 47999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhhhHHHHHHHh-hccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceeeec
Q 004303 378 VVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCG 456 (762)
Q Consensus 378 v~~~~~f~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l~~ 456 (762)
+++|++|+.+.+.+.|.+.| +.. .+.+||+|+||||||+|++|++++||++. ++++.|++++
T Consensus 396 v~~y~~F~~~~~~~~f~~dl~~~l--~~~~gf~a~mrVR~S~gl~v~~~~G~~~~---------------~~t~~~~l~~ 458 (770)
T 3efo_B 396 LYKYNNFQMHLDRQQFLNDLRNDI--EKKIGFDAIMRVRTSTGFRATDFFGGILM---------------NNTTDVEMAA 458 (770)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHH--HSCEEEEEEEEEEECTTEEEEEEESSCBC---------------SSSSCEEEEE
T ss_pred EEEecCCcchhHHHHHHHHHHHhh--hhceeeeEEEEEEecCCeEEEEeECCeeC---------------CCCCceEecc
Confidence 99999999887777777666 333 25689999999999999999999999874 4688999999
Q ss_pred CCCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHHHH
Q 004303 457 LDKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMA 536 (762)
Q Consensus 457 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~lla 536 (762)
++++++|+|+|++++++. ....+|||+|++||+.+|+|||||||+++|++++ +.++|+++|+||++++|+
T Consensus 459 ~~~d~s~~v~f~~~~~l~-------~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~---~~~v~~~~Dqea~~~lla 528 (770)
T 3efo_B 459 IDCDKAVTVEFKHDDKLS-------EDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQ---LADLYKSCETDALINFFA 528 (770)
T ss_dssp EESSCCEEEEEEESSCCB-------TTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESC---HHHHHHTBCHHHHHHHHH
T ss_pred cCcCceEEEEEEecCCCC-------CCCcEEEEEEEEEEcCCCCEEEEEEEechhhccc---HHHHHHhcCHHHHHHHHH
Confidence 999999999999999874 3568999999999999999999999999999984 999999999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHhcccccCC-----CCCcCCCcccccHHHHHHHHhcccCcCC-CCCChHHHH
Q 004303 537 RLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-----PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETA 610 (762)
Q Consensus 537 k~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~-----~~~l~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~ 610 (762)
|+|+.++.++++.++|+.|.++++++ |+.|||++ ++||+||++||+||+||++|+||++|+. ++++||||+
T Consensus 529 r~av~~~~~~~l~~~r~~L~~~~~~~---l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~ 605 (770)
T 3efo_B 529 KSAFKAVLHQPLKVIREILVNQTAHM---LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERA 605 (770)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHH---HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHH
Confidence 99999999988877887777766665 89999975 3579999999999999999999999996 799999999
Q ss_pred HHHHHHccCCHHHHHHhhcccceeccc-----CCCCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCc
Q 004303 611 YFRMILNRENVTNSVVMIQPSLISYSF-----HSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQP 685 (762)
Q Consensus 611 ~~~~~l~~~~~~~~~~~iyP~L~~~~~-----~~~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~ 685 (762)
|+++.++++++.+++.||||+||++|. +..|++++||.++|.++||||||+|+.++||+|+++++|+.+.+++.+
T Consensus 606 ~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~ 685 (770)
T 3efo_B 606 YQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVP 685 (770)
T ss_dssp HHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSS
T ss_pred HHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCC
Confidence 999999999999999999999999984 247899999999999999999999999999999999998776666666
Q ss_pred hhHHHHH-hhcCC----------HHHHHHHHHcCCCCcEEEEEccCC-chhhhHHhh--hcc--CCCcHhhHhhhhcccc
Q 004303 686 EHQAFAQ-LLQAP----------HDDAGVIMKERFPVPRLVICDQHG-SQVGSYHNV--QQM--GGSLWMIVVCYLLSPG 749 (762)
Q Consensus 686 ~~~~~~~-~l~~p----------~~~~~~i~~~R~~~p~~~~~~~g~-sq~rf~~~l--~~~--~~~~y~d~l~~~~~~~ 749 (762)
+++.+.. +..+| +..++.+++.|..++++++++||+ .+..|..+| |+. +++||+|||||||..+
T Consensus 686 ~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~~~~~SY~dfL~~lh~~i 765 (770)
T 3efo_B 686 SFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFLCCVHKEI 765 (770)
T ss_dssp SGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC---CCCHHHHHHHHHHHH
T ss_pred chhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCCCCCCCHHHHHHHHHHHH
Confidence 6655421 12233 245677788898899999999995 567788878 776 4589999999999998
Q ss_pred cccc
Q 004303 750 KDIL 753 (762)
Q Consensus 750 ~~~~ 753 (762)
+.++
T Consensus 766 ~~~l 769 (770)
T 3efo_B 766 CQLL 769 (770)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8765
No 4
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=9.4e-134 Score=1182.46 Aligned_cols=660 Identities=19% Similarity=0.322 Sum_probs=581.7
Q ss_pred cccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCC-CCcccCCCCceecCcceEEcCCceEEec
Q 004303 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY-APLRCRTCRSILNPFSIVDFAAKIWICP 84 (762)
Q Consensus 6 ~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~-~p~RC~~C~ayiNp~~~~~~~~~~w~C~ 84 (762)
-|++|+|||+|||+||.|++++++++||||++|+||++.. ++|++++ +|+||++|||||||||+|.+ +++|+||
T Consensus 36 ~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~~~p~RC~rCrayiNPf~~f~~-~~~w~Cn 110 (751)
T 3eh1_A 36 LNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITSNTIVRCRSCRTYINPFVSFID-QRRWKCN 110 (751)
T ss_dssp HSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECCSCCCBCTTTCCBCCTTCEESS-SSEEECT
T ss_pred cCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCCCCCCcccCccCEeCCceEEec-CCEEEcc
Confidence 4999999999999999999999999999999999999865 6888776 58999999999999999954 6999999
Q ss_pred CCCCCCCCCcCCC--CCC----CCCCCccccCCCccEEEecCC----CCCCCCCCcEEEEEEECCCChhH---HHHHHHH
Q 004303 85 FCFQRNHFPPHYA--SIT----DDNLPAELFPQYTTIEYEPPG----PGEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (762)
Q Consensus 85 ~C~~~N~~p~~y~--~~~----~~~~~pEL~~~~~tvey~~~~----~~p~~~~~p~~vFvID~s~~~~~---l~~~~~~ 151 (762)
||+..|++|++|. .++ +.++||||. ++||||++|+ ++| +||+|+||||+|.++++ +++++++
T Consensus 111 ~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~--~~tvEy~~p~~y~~r~p---~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 111 LCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQ--NSTVEFIASSDYMLRPP---QPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp TTCCEEECCGGGC---------CGGGSHHHH--CSEEEEEECGGGCSSSC---CCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred cccCCCCCCHHHhcccccccccCcccCchhc--cceEEEEcChhhhcCCC---CCcEEEEEEEccHhhhhhhHHHHHHHH
Confidence 9999999999983 232 346899997 9999999996 456 89999999999999988 8999999
Q ss_pred HHHHhhcCCCCc--EEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHhhcccCCCCCCCccccCccCCCC
Q 004303 152 LSQAIDLLPDNS--LVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLS 229 (762)
Q Consensus 152 l~~~l~~lp~~~--~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~ 229 (762)
|+++|+.||+++ +|||||||+.||||+++ .++++++|+|+ .|++|+|
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~-~~~~~~qmlvv--------~dl~d~f---------------------- 234 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQ-EGLSQPQMLIV--------SDIDDVF---------------------- 234 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECC-TTCSSCEEEEE--------SCTTCTT----------------------
T ss_pred HHHHHHhcCCCcCcEEEEEEeCCEEEEEECC-CCcccceeecc--------ccccccC----------------------
Confidence 999999999875 99999999999999999 77788999997 3566655
Q ss_pred cccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCccc
Q 004303 230 SDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAI 308 (762)
Q Consensus 230 ~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~GpG~l 308 (762)
.|+ ++||+|++||++.|+++|++|+. ++++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|
T Consensus 235 -~P~~~~~lv~l~e~~~~i~~lL~~Lp~---~~~~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG~l 306 (751)
T 3eh1_A 235 -LPTPDSLLVNLYESKELIKDLLNALPN---MFTNTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAGLL 306 (751)
T ss_dssp -SCCGGGTSEETTTTHHHHHHHHHHGGG---TSTTCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTTCC
T ss_pred -CCChhhhcccHHHHHHHHHHHHHhhhH---hhcCCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCCcc
Confidence 333 79999999999999999999987 578889999999999999999998 589999999999999999999
Q ss_pred ccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEEeCCCChh-
Q 004303 309 VSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA- 387 (762)
Q Consensus 309 ~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~~~~f~~~- 387 (762)
+.|+.++ .|+|. |+ +++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+
T Consensus 307 ~~r~~~~-~~~~~---ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~ 381 (751)
T 3eh1_A 307 QSREDPN-QRSST---KV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTH 381 (751)
T ss_dssp CCCCCSC-GGGGS---SS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTT
T ss_pred ccccccc-cCCCc---hh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCccccc
Confidence 9987654 35552 33 589999999999999999999999999999999999999999999999999999999863
Q ss_pred ------hhHHHHHHHhhccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceeeecCCCCc
Q 004303 388 ------VFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKAT 461 (762)
Q Consensus 388 ------~~~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l~~~~~~~ 461 (762)
+|.++|.+.|.+ ++||+|+||||||+|++|++++||++. ++++.|+++++++|+
T Consensus 382 ~~~~~~~f~~dl~r~l~~-----~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i~~d~ 441 (751)
T 3eh1_A 382 NPSQAEKLQKDLKRYLTR-----KIGFEAVMRIRCTKGLSMHTFHGNFFV---------------RSTDLLSLANINPDA 441 (751)
T ss_dssp BHHHHHHHHHHHHHHHHS-----CCEEEEEEEEEECTTEEEEEEESSSEE---------------CSSSEEEEEEECTTC
T ss_pred chhHHHHHHHHHHHHHhh-----hhccceEEEEEecCCeEEEEeeCCeEe---------------CCCCceEeccCCCCC
Confidence 678888888843 479999999999999999999999985 468899999999999
Q ss_pred eEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHHHHHHHHH
Q 004303 462 SLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541 (762)
Q Consensus 462 s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~llak~a~~ 541 (762)
+++|+|++++++. ....+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++|+|+|++
T Consensus 442 s~~v~~~~~~~l~-------~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~---~~~v~~~~DqeA~~~llar~av~ 511 (751)
T 3eh1_A 442 GFAVQLSIEESLT-------DTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSS---LADVYAGVDVQAAICLLANMAVD 511 (751)
T ss_dssp CEEEEEEESSCCC-------SCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECS---HHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCC-------CCCceEEEEEEeeecCCCCEEEEEEEecccccCC---HHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999874 3678999999999999999999999999999984 99999999999999999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHhcccccCC-CCCcCCCcccccHHHHHHHHhcccCcC-CCCCChHHHHHHHHHHccC
Q 004303 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-PSSFSLSPRFSIFPQFMFHLRRSQFVQ-VFNNSPDETAYFRMILNRE 619 (762)
Q Consensus 542 ~~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~-~~~l~lp~~l~~lP~~~~~L~ks~~l~-~~~~s~Der~~~~~~l~~~ 619 (762)
++.+++..|+|+||++++++++++|+.|.++. +++|+||++||+||+||++|+||.+|+ ++++++|||+|+++.++++
T Consensus 512 ~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~ 591 (751)
T 3eh1_A 512 RSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQ 591 (751)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHS
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCC
Confidence 99999999999999999999987777666543 458999999999999999999999999 4799999999999999999
Q ss_pred CHHHHHHhhcccceeccc---------CC----CCccccccccccccCeEEEEeCCcEEEEEEcCchh-HHHHcccCCCc
Q 004303 620 NVTNSVVMIQPSLISYSF---------HS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA-QWRKAGYHNQP 685 (762)
Q Consensus 620 ~~~~~~~~iyP~L~~~~~---------~~----~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~-~~~~~~~~~~~ 685 (762)
++.+++.||||+||++|. ++ .|..++||.++|.++||||||+|+.++||+|++++ +|+.+.|+. +
T Consensus 592 ~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv-~ 670 (751)
T 3eh1_A 592 PLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGY-T 670 (751)
T ss_dssp CHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCC-S
T ss_pred CHHHHHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCC-C
Confidence 999999999999999994 22 34556779999999999999999999999999998 577777774 3
Q ss_pred hhHHHHH-hhcCCH----------HHHHHHHHcCCCCcEEEEEccCC-chhhhHHhh--hccC-CCcHhhHhhhhccccc
Q 004303 686 EHQAFAQ-LLQAPH----------DDAGVIMKERFPVPRLVICDQHG-SQVGSYHNV--QQMG-GSLWMIVVCYLLSPGK 750 (762)
Q Consensus 686 ~~~~~~~-~l~~p~----------~~~~~i~~~R~~~p~~~~~~~g~-sq~rf~~~l--~~~~-~~~y~d~l~~~~~~~~ 750 (762)
++..+.. ..++|+ ..++.++++|..+|+++++++|+ .+..|..+| |+.+ ++||+||||+||..+.
T Consensus 671 ~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i~ 750 (751)
T 3eh1_A 671 NFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQIC 750 (751)
T ss_dssp SGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHHH
T ss_pred chhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHhc
Confidence 3333311 112221 34667788898899999999984 577888888 6665 4899999999998764
No 5
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-133 Score=1185.13 Aligned_cols=670 Identities=19% Similarity=0.309 Sum_probs=588.3
Q ss_pred cccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCC---CCCcccCCCCceecCcceEEcCCceEE
Q 004303 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWI 82 (762)
Q Consensus 6 ~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~---~~p~RC~~C~ayiNp~~~~~~~~~~w~ 82 (762)
.|++|+|||+|||+||.|++++++++||||++|+||++..++|.++|+++ ++|+||++|||||||||+|+++|++|+
T Consensus 39 gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 118 (766)
T 3eh2_A 39 GNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQ 118 (766)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEE
T ss_pred CCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEE
Confidence 39999999999999999999999999999999999999887777888874 579999999999999999999999999
Q ss_pred ecCCCCCCCCCcCC-CCCCC------CCCCccccCCCccEEEecCC------CCCCCCCCcEEEEEEECCCChhH---HH
Q 004303 83 CPFCFQRNHFPPHY-ASITD------DNLPAELFPQYTTIEYEPPG------PGEKSSVPPVFMFVVDTCIIEEE---MS 146 (762)
Q Consensus 83 C~~C~~~N~~p~~y-~~~~~------~~~~pEL~~~~~tvey~~~~------~~p~~~~~p~~vFvID~s~~~~~---l~ 146 (762)
||||+..|++|++| ++++. .++||||. .++|||.+|. ++| +||+|+||||+|.++++ ++
T Consensus 119 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~~vef~a~~eY~~~~~~p---~pp~y~FvIDvs~~av~sg~l~ 193 (766)
T 3eh2_A 119 CCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELS--LGSYEFLATVDYCKNNKFP---SPPAFIFMIDVSYNAIRTGLVR 193 (766)
T ss_dssp CTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHH--CSEEEEECCGGGSGGGSCC---CCCEEEEEEECSHHHHHTTHHH
T ss_pred eccccccCCCCHHHhccccccccccccccCcccc--cCceeeecCHhhccCCCCC---CCCEEEEEEECchhhccchHHH
Confidence 99999999999999 54432 36899998 9999999885 356 89999999999999875 99
Q ss_pred HHHHHHHHHhhcCCCC-------cEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHhhcccCCCCCCCc
Q 004303 147 FLKSALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTG 219 (762)
Q Consensus 147 ~~~~~l~~~l~~lp~~-------~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~~~~~~~~~p~~~ 219 (762)
+++++|+++|+.||++ ++|||||||+.||||+++ .++++|+|+|+ .|++|+|
T Consensus 194 ~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~~~q~~vv--------~dl~d~f------------ 252 (766)
T 3eh2_A 194 LLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVK-SSLAQPQMMVV--------SDVADMF------------ 252 (766)
T ss_dssp HHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECC-TTCSSCEEEEE--------CCTTTCC------------
T ss_pred HHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECC-CCCCCceEEEe--------cChhhhc------------
Confidence 9999999999999975 899999999999999999 77689999997 3666655
Q ss_pred cccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEec
Q 004303 220 VIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298 (762)
Q Consensus 220 ~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~s 298 (762)
+|+ ++||+|++||++.|+++|++|++ ++++...+.+|+|+|+++|..+++. .+.||||++|++
T Consensus 253 -----------~P~~~~~lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s 316 (766)
T 3eh2_A 253 -----------VPLLDGFLVNVNESRAVITSLLDQIPE---MFADTRETETVFVPVIQAGMEALKA--AECAGKLFLFHT 316 (766)
T ss_dssp -----------CCCCTTSSBCTTTTHHHHHHHHHHHHH---HHTTCCCCCCCSHHHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred -----------cccccceeEeHHHHHHHHHHHHHhhhh---hccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEec
Confidence 444 79999999999999999999998 3455556788999999999999985 358999999999
Q ss_pred CCCC-CCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccce
Q 004303 299 GPST-EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGL 377 (762)
Q Consensus 299 g~pt-~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~ 377 (762)
|+|+ .|||+|+.+++++.+|+ +||+ ++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 317 ~lP~t~GpG~l~~r~~~~~~~s----dke~-~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~ 391 (766)
T 3eh2_A 317 SLPIAEAPGKLKNRDDRKLINT----DKEK-TLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGS 391 (766)
T ss_dssp SCCCSSSTTCCCCCCCGGGTTS----TTGG-GGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCC
T ss_pred CCCCcCCCcccccccccccCCC----cchh-hhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCce
Confidence 9666 89999999998888875 3553 7999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhhhHHHHHHHh-hccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceeeec
Q 004303 378 VVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCG 456 (762)
Q Consensus 378 v~~~~~f~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l~~ 456 (762)
+++|++|+.+.+.+.|.+.| +.. .+.+||+|+||||||+|++|++++||++. ++++.|++++
T Consensus 392 v~~y~~F~~~~d~~~f~~dl~~~l--~~~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~ 454 (766)
T 3eh2_A 392 VYKYASFQVENDQERFLSDLRRDV--QKVVGFDAVMRVRTSTGIRAVDFFGAFYM---------------SNTTDVELAG 454 (766)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHH--HSCEEEEEEEEEEECTTEEEEEEEESCBC---------------SSSSCEEEEE
T ss_pred EEEeCCCcchhHHHHHHHHHHHHh--hhcceeeEEEEEEecCCeEEEEeECCeec---------------CCCCceeecc
Confidence 99999999887666665555 332 25689999999999999999999999874 4688999999
Q ss_pred CCCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHHHH
Q 004303 457 LDKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMA 536 (762)
Q Consensus 457 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~lla 536 (762)
+++|++|+|+|++++++. ....+|||+|++||+.+|+|||||||+++|++++ +.++|+++|+||++++|+
T Consensus 455 i~~d~s~~v~f~~~~~l~-------~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~---~~~v~~~~Dqea~~~lla 524 (766)
T 3eh2_A 455 LDGDKTVTVEFKHDDRLN-------EESGALLQCALLYTSCAGQRRLRIHNLALNCCTQ---LADLYRNCETDTLINYMA 524 (766)
T ss_dssp EETTCCEEEEEEESSCCC-------TTTCEEEEEEEEEECTTSCEEEEEEEEEEEEESS---HHHHHHTBCHHHHHHHHH
T ss_pred CCCCceEEEEEEecCCCC-------CCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecCC---HHHHHHhcCHHHHHHHHH
Confidence 999999999999999874 3678999999999999999999999999999984 999999999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHhcccccCC-----CCCcCCCcccccHHHHHHHHhcccCcCC-CCCChHHHH
Q 004303 537 RLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-----PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETA 610 (762)
Q Consensus 537 k~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~-----~~~l~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~ 610 (762)
|+|+.++.+++..++|+.|.++++++ |+.|||++ ++||+||++||+||+||++|+||++|+. ++++||||+
T Consensus 525 r~av~~~~~~~~~~~R~~l~~~~~~~---l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~ 601 (766)
T 3eh2_A 525 KFAYRGVLNSPVKAVRDTLITQCAQI---LACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRA 601 (766)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHH---HHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHHH
Confidence 99999999999888998888887777 89999875 3579999999999999999999999996 699999999
Q ss_pred HHHHHHccCCHHHHHHhhcccceeccc---C--CCCccccccccccccCeEEEEeCCcEEEEEEcCchhHH-HHcccCCC
Q 004303 611 YFRMILNRENVTNSVVMIQPSLISYSF---H--SGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQW-RKAGYHNQ 684 (762)
Q Consensus 611 ~~~~~l~~~~~~~~~~~iyP~L~~~~~---~--~~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~-~~~~~~~~ 684 (762)
|+++.++++++.+++.||||+||++|. + ..|++++||.++|.++||||||+|+.++||+|+++++| +.+.|+ .
T Consensus 602 ~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFg-v 680 (766)
T 3eh2_A 602 YVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFS-V 680 (766)
T ss_dssp HHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHS-C
T ss_pred HHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcC-C
Confidence 999999999999999999999999984 3 36899999999999999999999999999999999975 555555 4
Q ss_pred chhHHHHH-hhcCC----------HHHHHHHHHcCCCCcEEEEEccCC-chhhhHHhh--hcc-C-CCcHhhHhhhhccc
Q 004303 685 PEHQAFAQ-LLQAP----------HDDAGVIMKERFPVPRLVICDQHG-SQVGSYHNV--QQM-G-GSLWMIVVCYLLSP 748 (762)
Q Consensus 685 ~~~~~~~~-~l~~p----------~~~~~~i~~~R~~~p~~~~~~~g~-sq~rf~~~l--~~~-~-~~~y~d~l~~~~~~ 748 (762)
+++..+.. ...+| +..++.+++.|..++++++++||+ .+..|..+| |+. + ++||+|||||||..
T Consensus 681 ~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~~~~SY~dfL~~lh~~ 760 (766)
T 3eh2_A 681 SSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKE 760 (766)
T ss_dssp SSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTTTCCCHHHHHHHHHHH
T ss_pred CchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCCCCCCHHHHHHHHHHH
Confidence 44443321 11223 134677778888899999999984 466777777 664 3 58999999999998
Q ss_pred ccccc
Q 004303 749 GKDIL 753 (762)
Q Consensus 749 ~~~~~ 753 (762)
++..+
T Consensus 761 i~~~l 765 (766)
T 3eh2_A 761 IRQLL 765 (766)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87654
No 6
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=4e-129 Score=1154.73 Aligned_cols=660 Identities=17% Similarity=0.230 Sum_probs=555.2
Q ss_pred cccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCC-CcccCCCCceecCcceEEcCCceEEec
Q 004303 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (762)
Q Consensus 6 ~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~-p~RC~~C~ayiNp~~~~~~~~~~w~C~ 84 (762)
-||+++|||+|||+||.+++++++++|||||+|+||++..++++++|+++++ |+||++|+|||||||+|+++|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 4899999999999999999999999999999999999877666688988774 999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCC------CCccccCCCccEEEecCC----CCCCCCCCcEEEEEEECCCChhH---HHHHHHH
Q 004303 85 FCFQRNHFPPHYASITDDN------LPAELFPQYTTIEYEPPG----PGEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (762)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~~------~~pEL~~~~~tvey~~~~----~~p~~~~~p~~vFvID~s~~~~~---l~~~~~~ 151 (762)
||++.|++|++|. ++..+ +||||. ++||||++|+ ++| .||+|+||||+|.++++ +++++++
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL~--~~tvEy~~p~~y~~~~p---~pp~yvFvIDvs~~av~~g~l~~~~~s 212 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQP---PPATYCFLIDVSQSSIKSGLLATTINT 212 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHHH--CSEEEEECCGGGCSSCC---CCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred CCCCcCCCchhhc-cccccCccccccCcccc--CceEEEEcCchhccCCC---CCcEEEEEEECChHHHhhhHHHHHHHH
Confidence 9999999999996 44433 459998 9999999995 346 89999999999999976 7899999
Q ss_pred HHHHhhcCCC---CcEEEEEEeCCeEEEEEcCCCCCC-------CCeeEEecCCccCChHHHHHHhhcccCCCCCCCccc
Q 004303 152 LSQAIDLLPD---NSLVGLITFGTLVQVHELGGFGQI-------IPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVI 221 (762)
Q Consensus 152 l~~~l~~lp~---~~~VglITfd~~V~~y~l~~~~~~-------~~~~~V~~g~~~~~~~~l~~~~~~~~~~~~p~~~~~ 221 (762)
|+++|+.||+ +++|||||||+.||||+++ .++. +++|+|+ .|++|+|
T Consensus 213 i~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~-~~~~g~k~~~~q~~mlvv--------~dl~d~f-------------- 269 (810)
T 1pcx_A 213 LLQNLDSIPNHDERTRISILCVDNAIHYFKIP-LDSENNEESADQINMMDI--------ADLEEPF-------------- 269 (810)
T ss_dssp HHHHTTTSCCTTSCCEEEEEEESSSEEEEECC-CGGGC-------CEEECC--------CCTTCC---------------
T ss_pred HHHHHHhCCCCCCCcEEEEEEECCEEEEEecC-ccccCccccccchhhccc--------ccccccc--------------
Confidence 9999999997 6999999999999999998 6433 4555554 2333332
Q ss_pred cCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCC
Q 004303 222 AGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGP 300 (762)
Q Consensus 222 ~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~ 300 (762)
.|+ ++||+|++||++.|+++|++|++ +++.++++.||+|+||++|..+|+ ..||||++|++|+
T Consensus 270 ---------~P~~~~~Lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~ 333 (810)
T 1pcx_A 270 ---------LPRPNSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTL 333 (810)
T ss_dssp -------------TTTSEETTTTHHHHHHHHHHHHH---HTTTCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSC
T ss_pred ---------CCCcccccccHHHHHHHHHHHHHhhhh---hccCCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCC
Confidence 333 89999999999999999999998 577889999999999999999999 5899999999999
Q ss_pred CCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEE
Q 004303 301 STEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVL 380 (762)
Q Consensus 301 pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~ 380 (762)
||.|||+|+.++.+ +|.+++||++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++
T Consensus 334 pt~GpG~l~~r~~~----~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~ 409 (810)
T 1pcx_A 334 PNLGIGKLQRRNES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHF 409 (810)
T ss_dssp CCSSTTCCCC------------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEE
T ss_pred CCCCCCcccccccc----cccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEE
Confidence 99999999999765 46788898877999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChhhh------HHHHHHHhhccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceee
Q 004303 381 SDSFGHAVF------KDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKM 454 (762)
Q Consensus 381 ~~~f~~~~~------~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l 454 (762)
|++|+.+++ ..++.+.+. +.+||+|+||||||+|++|++++||++. .+++.|++
T Consensus 410 y~~F~~~~~~d~~~f~~dl~~~l~-----~~~gf~a~mrVR~S~gl~v~~~~G~~~~---------------~~~~~~~l 469 (810)
T 1pcx_A 410 YPGFSGKNPNDIVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFN---------------RSSDLCAF 469 (810)
T ss_dssp EETCCTTSHHHHHHHHHHHHHHHH-----CCCCEEEEEEEEECTTEEEEEEESSSBC---------------SSSSEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHHHhh-----hhcceeEEEEEEcCCCeEEEEeecCccc---------------cCcCceEe
Confidence 999998744 334444442 3479999999999999999999999986 23678999
Q ss_pred ecCCCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHH
Q 004303 455 CGLDKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVV 534 (762)
Q Consensus 455 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~l 534 (762)
+++++++||+|+|++++++. ...+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++
T Consensus 470 ~~~~~d~s~~v~f~~~~~l~--------~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~---~~~v~~~~Dqea~~~l 538 (810)
T 1pcx_A 470 STMPRDQSYLFEVNVDESIM--------ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTES---LAEVYASADQLAIASF 538 (810)
T ss_dssp SSCCSSCCEEEEEEECSCCC--------SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESC---HHHHHHTBCHHHHHHH
T ss_pred ecCCCCCEEEEEEEeccCCC--------CCcEEEEEEEEEEcCCCCEEEEEEecCccccCC---HHHHHHhcCHHHHHHH
Confidence 99999999999999999763 468999999999999999999999999999984 9999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhcccccCCC-------CCcCCCcccccHHHHHHHHhcccCcCCCCCCh-
Q 004303 535 MARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSP-------SSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSP- 606 (762)
Q Consensus 535 lak~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~~-------~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~- 606 (762)
|+|+++.++.+++..|+|+||+++++++ ++.|||+++ ++|+||++||+||+|||+|+||++|+ ++.+|
T Consensus 539 lar~av~~~~~~~~~d~r~~l~~~li~i---l~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~ 614 (810)
T 1pcx_A 539 YNSKAVEKALNSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPS 614 (810)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCc
Confidence 9999999999999999999999999999 778998765 36999999999999999999999999 56655
Q ss_pred HHHHHHHHHHccCCHHHHHHhhcccceecccC----C---------------CCccccccccccccCeEEEEeCCcEEEE
Q 004303 607 DETAYFRMILNRENVTNSVVMIQPSLISYSFH----S---------------GPEPALLDVAAIAADRILLLDSYFTVVI 667 (762)
Q Consensus 607 Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~----~---------------~p~~~~Ls~~~l~~~~iyLlD~g~~i~i 667 (762)
|||+|++++++++++.+++.||||+||++|.. + .|++++||.+.|.++|+||||+|..+++
T Consensus 615 Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~l 694 (810)
T 1pcx_A 615 DHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFL 694 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEE
T ss_pred cHHHHHHHHHHcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEE
Confidence 99999999999999999999999999999852 2 2789999999999999999999999999
Q ss_pred EEcCchh-HHHHcccCCCchhHHHHH-hhcCC-----------HHHHHHHHHcCC--CCcEEEEEccCCc----------
Q 004303 668 FHGATIA-QWRKAGYHNQPEHQAFAQ-LLQAP-----------HDDAGVIMKERF--PVPRLVICDQHGS---------- 722 (762)
Q Consensus 668 ~~G~~v~-~~~~~~~~~~~~~~~~~~-~l~~p-----------~~~~~~i~~~R~--~~p~~~~~~~g~s---------- 722 (762)
|+|++++ +|+.+.|+.+ +...+.. ..++| +..++.|++.|. .+|++++++|+..
T Consensus 695 wvg~~~~~~l~~~lFg~~-~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~ 773 (810)
T 1pcx_A 695 WMGGDAVPALVFDVFGTQ-DIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAR 773 (810)
T ss_dssp EECTTCCHHHHHHHHSCS-CGGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHH
T ss_pred EeCCCCCHHHHHHHhCCC-chhhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCcccccccc
Confidence 9999998 5777777753 2222210 00111 134667777775 5788899987631
Q ss_pred -----hhhhHHhh--hccCC-CcHhhHhhhhccccc
Q 004303 723 -----QVGSYHNV--QQMGG-SLWMIVVCYLLSPGK 750 (762)
Q Consensus 723 -----q~rf~~~l--~~~~~-~~y~d~l~~~~~~~~ 750 (762)
+..|+.+| |+.++ +||+||||+||..++
T Consensus 774 ~~~~~~~~f~~~LvED~~~~~~SY~~fL~~lh~~i~ 809 (810)
T 1pcx_A 774 EVATLRLWASSTLVEDKILNNESYREFLQIMKARIS 809 (810)
T ss_dssp HHHHHHHHHHTTCTTSCBTTBCCHHHHHHHHHHHTC
T ss_pred chhhHHHHHHHhCeecCCCCCCCHHHHHHHHHHHhh
Confidence 23456666 66654 899999999998875
No 7
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=3e-129 Score=1159.13 Aligned_cols=660 Identities=16% Similarity=0.228 Sum_probs=562.9
Q ss_pred cccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCC-CcccCCCCceecCcceEEcCCceEEec
Q 004303 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (762)
Q Consensus 6 ~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~-p~RC~~C~ayiNp~~~~~~~~~~w~C~ 84 (762)
-||+++|||+|||+||.|++++++++|||||+|+||++..++++++|+++++ |+||++|+|||||||+|+++|++|+||
T Consensus 175 gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cn 254 (926)
T 1m2v_B 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 254 (926)
T ss_dssp SSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 4899999999999999999999999999999999999877666688988774 999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCC------CCccccCCCccEEEecCC----CCCCCCCCcEEEEEEECCCChhH---HHHHHHH
Q 004303 85 FCFQRNHFPPHYASITDDN------LPAELFPQYTTIEYEPPG----PGEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (762)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~~------~~pEL~~~~~tvey~~~~----~~p~~~~~p~~vFvID~s~~~~~---l~~~~~~ 151 (762)
||++.|++|.+|. ++..+ +||||. ++||||++|+ ++| .||+|+||||+|.++++ +++++++
T Consensus 255 fC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL~--~~tvEyi~p~ey~~r~p---~ppvyvFvIDvS~~av~~g~l~~l~~s 328 (926)
T 1m2v_B 255 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQP---PPATYCFLIDVSQSSIKSGLLATTINT 328 (926)
T ss_dssp TTCCEEECCGGGT-TTSTTCGGGGGGSHHHH--CSEEEEECCGGGCSSCC---CCCBEEEEEECSHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCchhhc-cccccCccccccCcccc--CceEEEEcChhhccCCC---CCcEEEEEEECCHHHHhhhHHHHHHHH
Confidence 9999999999996 44444 459998 9999999995 446 89999999999999987 8899999
Q ss_pred HHHHhhcCCC---CcEEEEEEeCCeEEEEEcCCCCCC-------CCeeEEecCCccCChHHHHHHhhcccCCCCCCCccc
Q 004303 152 LSQAIDLLPD---NSLVGLITFGTLVQVHELGGFGQI-------IPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVI 221 (762)
Q Consensus 152 l~~~l~~lp~---~~~VglITfd~~V~~y~l~~~~~~-------~~~~~V~~g~~~~~~~~l~~~~~~~~~~~~p~~~~~ 221 (762)
|+++|+.||+ +++|||||||+.||||+++ .++. +++|+|++ |++|+|
T Consensus 329 I~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~-~~~~g~k~~~~q~qmlvvs--------dl~d~f-------------- 385 (926)
T 1m2v_B 329 LLQNLDSIPNHDERTRISILCVDNAIHYFKIP-LDSENNEESADQINMMDIA--------DLEEPF-------------- 385 (926)
T ss_dssp HHHTTTTSCCTTSCCEECEEEESSSEEEEECC-CC---------CCEEEEEC--------CCSSCC--------------
T ss_pred HHHHHHhCCCCCCCcEEEEEEECCEEEEEecC-CcccCCcccccchhhcccc--------cccccc--------------
Confidence 9999999997 6999999999999999998 6533 46666652 333333
Q ss_pred cCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCC
Q 004303 222 AGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGP 300 (762)
Q Consensus 222 ~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~ 300 (762)
.|+ ++||+|++||++.|+++|++|++ +++.++++.||+|+||++|..+|+ ..||||++|++|+
T Consensus 386 ---------~P~~~~~Lv~l~e~~~~I~~lLe~L~~---~~~~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~ 449 (926)
T 1m2v_B 386 ---------LPRPNSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTL 449 (926)
T ss_dssp ---------CSCSSSSSEETTTTHHHHHHHHHHHHH---HTSSCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSC
T ss_pred ---------CCCcccccccHHHHHHHHHHHHHhhhh---hhcCCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCC
Confidence 333 89999999999999999999998 577889999999999999999999 5899999999999
Q ss_pred CCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEE
Q 004303 301 STEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVL 380 (762)
Q Consensus 301 pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~ 380 (762)
||.|||+|+.++.+ +|.+++||++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++
T Consensus 450 Pt~GpG~l~~re~~----~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~ 525 (926)
T 1m2v_B 450 PNLGIGKLQRRNES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHF 525 (926)
T ss_dssp CCSSTTCCCCCCC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEE
T ss_pred CCCCCCcccccccc----cccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEE
Confidence 99999999999765 46788888766999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChhhhH------HHHHHHhhccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceee
Q 004303 381 SDSFGHAVFK------DSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKM 454 (762)
Q Consensus 381 ~~~f~~~~~~------~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l 454 (762)
|++|+.++++ .++.+.+. +.+||+|+||||||+||+|++++||++. .+++.|++
T Consensus 526 y~~F~~~~~~d~~kf~~dl~~~Lt-----~~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~s~~~~l 585 (926)
T 1m2v_B 526 YPGFSGKNPNDIVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFN---------------RSSDLCAF 585 (926)
T ss_dssp EESCCTTSHHHHHHHHHHHHHHHH-----SCCEEEEEEEEEECTTEEEEEEESSSBC---------------SSTTEEEE
T ss_pred cCCCcchhhhHHHHHHHHHHHHhh-----hhhceeEEEEEEeCCCcEEEEeecCccc---------------cCcCceEe
Confidence 9999987543 34444442 3479999999999999999999999985 23678999
Q ss_pred ecCCCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHH
Q 004303 455 CGLDKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVV 534 (762)
Q Consensus 455 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~l 534 (762)
+++++++||+|+|++++++. ...+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++
T Consensus 586 ~~l~~d~s~av~f~~~~~l~--------~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~---l~~v~~s~Dqea~~~l 654 (926)
T 1m2v_B 586 STMPRDQSYLFEVNVDESIM--------ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTES---LAEVYASADQLAIASF 654 (926)
T ss_dssp EEECSSCCEEEEEEECSBCC--------SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESC---HHHHHHTBCHHHHHHH
T ss_pred eccCCCCEEEEEEEeccCCC--------CCcEEEEEEEEEEcCCCCEEEEEEeecccccCC---HHHHHHhcCHHHHHHH
Confidence 99999999999999999763 468999999999999999999999999999984 9999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhcccccCCC-------CCcCCCcccccHHHHHHHHhcccCcCCCCCCh-
Q 004303 535 MARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSP-------SSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSP- 606 (762)
Q Consensus 535 lak~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~~-------~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~- 606 (762)
|+|+++.++++++..|+|+||+++|+++ ++.|||+++ ++|+||++||+||+|||+|+||++|+ ++.+|
T Consensus 655 lar~av~~~~~~~~~d~r~~L~~~li~i---l~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~ 730 (926)
T 1m2v_B 655 YNSKAVEKALNSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPS 730 (926)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHH---HHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCc
Confidence 9999999999999999999999999999 778998765 26999999999999999999999999 56555
Q ss_pred HHHHHHHHHHccCCHHHHHHhhcccceecccC----C---------------CCccccccccccccCeEEEEeCCcEEEE
Q 004303 607 DETAYFRMILNRENVTNSVVMIQPSLISYSFH----S---------------GPEPALLDVAAIAADRILLLDSYFTVVI 667 (762)
Q Consensus 607 Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~----~---------------~p~~~~Ls~~~l~~~~iyLlD~g~~i~i 667 (762)
|||+|++++++++++.+++.||||+||++|.. + .|++++||.+.|+++|+||||+|..+++
T Consensus 731 Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~l 810 (926)
T 1m2v_B 731 DHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFL 810 (926)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEE
T ss_pred cHHHHHHHHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEE
Confidence 99999999999999999999999999999862 2 2789999999999999999999999999
Q ss_pred EEcCchh-HHHHcccCCCchhHHHHH-hhcCCH-----------HHHHHHHHcCC--CCcEEEEEccCCc----------
Q 004303 668 FHGATIA-QWRKAGYHNQPEHQAFAQ-LLQAPH-----------DDAGVIMKERF--PVPRLVICDQHGS---------- 722 (762)
Q Consensus 668 ~~G~~v~-~~~~~~~~~~~~~~~~~~-~l~~p~-----------~~~~~i~~~R~--~~p~~~~~~~g~s---------- 722 (762)
|+|++++ +|+.+.|+. ++...+.. ..++|. ..++.|++.|. .+|++++++++..
T Consensus 811 WvG~~~~p~ll~dlFg~-~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~ 889 (926)
T 1m2v_B 811 WMGGDAVPALVFDVFGT-QDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAR 889 (926)
T ss_dssp EECTTCCSGGGC--------------------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CC
T ss_pred EecCCCCHHHHHHHhCC-CchhhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCcccccccc
Confidence 9999998 567777664 33333311 112221 23455566664 5688889977521
Q ss_pred -----hhhhHHhh--hccC-CCcHhhHhhhhccccc
Q 004303 723 -----QVGSYHNV--QQMG-GSLWMIVVCYLLSPGK 750 (762)
Q Consensus 723 -----q~rf~~~l--~~~~-~~~y~d~l~~~~~~~~ 750 (762)
+..|+.+| |+.+ ++||+||||+||..++
T Consensus 890 ~~~~~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i~ 925 (926)
T 1m2v_B 890 EVATLRLWASSTLVEDKILNNESYREFLQIMKARIS 925 (926)
T ss_dssp HHHHHHHHHHHTCTTSSCTTCCCHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHhCeecCCCCCCCHHHHHHHHHHHhh
Confidence 23466677 6665 4899999999998875
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.63 E-value=5.8e-17 Score=126.00 Aligned_cols=52 Identities=50% Similarity=1.128 Sum_probs=47.1
Q ss_pred CCCCCcccCC--CCceecCcceEEcCCceEEecCCCCCCCCCcCCCCCCCCCCC
Q 004303 54 LPYAPLRCRT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLP 105 (762)
Q Consensus 54 ~~~~p~RC~~--C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~ 105 (762)
.+++|+||++ |+||||||++|+.++++|+|+||++.|++|++|..++++|+|
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 4678999999 999999999999999999999999999999999877666554
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.12 E-value=2.4e-07 Score=103.84 Aligned_cols=315 Identities=13% Similarity=0.063 Sum_probs=193.6
Q ss_pred CcEEEEEEECCCChh----HHHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHH
Q 004303 129 PPVFMFVVDTCIIEE----EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (762)
Q Consensus 129 ~p~~vFvID~s~~~~----~l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~ 204 (762)
+.-++||||+|.++. .++.++++++..++.++++.+||||+|++..+.+--. ..
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~-t~--------------------- 134 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT-GG--------------------- 134 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESS-SS---------------------
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecC-Cc---------------------
Confidence 456999999999876 3999999999999999999999999999887654211 00
Q ss_pred HHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhc
Q 004303 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (762)
Q Consensus 205 ~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 284 (762)
. + .+. -...+..+...|+.|.. ...+.++.||..|..++..
T Consensus 135 ~-l-----------------------~~~------~~~~~~~l~~~I~~L~~---------~GgT~l~~aL~~A~~~l~~ 175 (464)
T 4fx5_A 135 Q-L-----------------------LRA------DYQSRAAAKEAVGRLHA---------NGGTAMGRWLAQAGRIFDT 175 (464)
T ss_dssp S-C-----------------------EEC------SHHHHHHHHHHHHTCCC---------CSCCCHHHHHHHHHHHHTT
T ss_pred c-c-----------------------ccC------CHHHHHHHHHHHHcCCC---------CCCCcHHHHHHHHHHHHhc
Confidence 0 0 000 01124456666667654 2357899999999999984
Q ss_pred cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCh
Q 004303 285 CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGV 364 (762)
Q Consensus 285 ~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l 364 (762)
.++....|+++++|.++.+. ...... +.++...++.|..|.++. ..+-
T Consensus 176 -~~~~~~~IILLTDG~~~~~~----------------------------~~~l~~--~~~a~~~~i~i~tiGiG~-~~d~ 223 (464)
T 4fx5_A 176 -APSAIKHAILLTDGKDESET----------------------------PADLAR--AIQSSIGNFTADCRGIGE-DWEP 223 (464)
T ss_dssp -CTTSEEEEEEEESSCCTTSC----------------------------HHHHHH--HHHHHTTTCEEEEEEESS-SSCH
T ss_pred -CCCCCCEEEEEcCCCCCCCC----------------------------hHHHHH--HHHHhcCCCeEEEEEeCC-ccCH
Confidence 12233578888998765421 001111 223445788888887754 4678
Q ss_pred hchhhhhccccceEEEeCCCChhhhHHHHHHHhhccccCccceeeeEEEEEecCCceEEeEEc--CccccCCCCCCcccc
Q 004303 365 AELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIG--PCASLEKKGPLCSDA 442 (762)
Q Consensus 365 ~~~~~L~~~TGG~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G--~~~~~~~~~~~isd~ 442 (762)
..|..++..|||..++.++... +.+.|.+++.... ....-++.+++++..|+.+..+.. +.... +...
T Consensus 224 ~~L~~IA~~tgG~~~~v~d~~~--L~~~f~~i~~~~~--s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~------l~~~ 293 (464)
T 4fx5_A 224 KELRKIADALLGTVGIIRDPAT--LAEDFREMTAKSM--GKEVADVALRLWAPKGATIRYVKQVSPNLAD------LSGM 293 (464)
T ss_dssp HHHHHHHHHTTCCEEEESSGGG--HHHHHHHHHHHHH--TCCEEEEEEEEECCTTCEEEEEEEEESBCEE------CGGG
T ss_pred HHHHHHHHhCCCEEEEcCCHHH--HHHHHHHHHHHhh--chheeeeEEEEEeCCCcEEEEEEeecccccc------cCcc
Confidence 8999999999999998877653 4445555552211 235789999999999998876532 11110 0000
Q ss_pred ccc--CCCCCceeeecCCCCceEEEEEEEecCCCCcccccCCCCeEE-EEEEEEEEecCCcEEEEEEeceeecccCCCCH
Q 004303 443 VVG--QGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQSTNNQFY-FQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSV 519 (762)
Q Consensus 443 ~~g--~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~ 519 (762)
..+ .+....+.++.+ .+.+=.|.+++.-+.. ..+...- .++.+.|.+..|++.+.=..+.+.++..
T Consensus 294 ~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~------~~g~~~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~~---- 362 (464)
T 4fx5_A 294 RVPGDNPLTGDYPTGAW-GAESREYHICVEVEPG------NIGQEKLAGRVQLVAKDAGGATLLGEGKIRAVWTED---- 362 (464)
T ss_dssp CEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCC------CTTCEEEEEEEEEEEEETTEEEEEEEEEEEEEECSC----
T ss_pred cccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCC------CCCceeEEEEEEEEEcCCCccccccccceEEEEEcc----
Confidence 001 123456888888 7777777777765432 2234433 7999999998887422222334444432
Q ss_pred HHHHhccCHHHHH--------HHHHHHHHHHhhcCCchhHHHHHHHH
Q 004303 520 QDLIAGFDQEAAA--------VVMARLVSFKMEIEAEFDPIRWLDKA 558 (762)
Q Consensus 520 ~~v~~~~D~ea~~--------~llak~a~~~~~~~~~~~~~~~l~~~ 558 (762)
...-...|+++.- ..+ +.+...+...+...+.+.|...
T Consensus 363 ~~~~~~~~~~V~~~~~~~~~a~~~-~~a~~~~~~gd~~~A~~~L~~A 408 (464)
T 4fx5_A 363 TDLSTRINGRVAHYTGQAEMAAAI-QEGLDAQAAGDLDTATARLGRA 408 (464)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 2223344443322 222 2344444455555566665443
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=3.5e-06 Score=84.29 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=114.3
Q ss_pred CCcEEEEEEECCCChh-------HHHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEE-cCCCCCCCCeeEEecCCccCC
Q 004303 128 VPPVFMFVVDTCIIEE-------EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVS 199 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~-------~l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~-l~~~~~~~~~~~V~~g~~~~~ 199 (762)
.+..++||||+|.+.. .++.+++++...++.++ +.+||||+|++..+..- +.
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~------------------- 69 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT------------------- 69 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE-------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC-------------------
Confidence 5678999999999865 58999999999999997 77999999997654321 11
Q ss_pred hHHHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH
Q 004303 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (762)
Q Consensus 200 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (762)
.....+..+|+.|.... . ....+.++.||..|.
T Consensus 70 ------------------------------------------~~~~~~~~~l~~l~~~~--~---~~g~T~l~~al~~a~ 102 (218)
T 3ibs_A 70 ------------------------------------------SDYISAKMFLESISPSL--I---SKQGTAIGEAINLAT 102 (218)
T ss_dssp ------------------------------------------SCHHHHHHHHHTCCGGG--C---CSCSCCHHHHHHHHH
T ss_pred ------------------------------------------CCHHHHHHHHHhcCccc--C---CCCCCcHHHHHHHHH
Confidence 01224455556665421 0 124578999999999
Q ss_pred HHhhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004303 280 SLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (762)
Q Consensus 280 ~ll~~~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (762)
..+... +.....|++++.|.++.| + ..+.+..+.+.||.|..+.++.
T Consensus 103 ~~l~~~-~~~~~~ivllTDG~~~~~-------~-------------------------~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 103 RSFTPQ-EGVGRAIIVITDGENHEG-------G-------------------------AVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp TTSCSC-SSCCEEEEEEECCTTCCS-------C-------------------------HHHHHHHHHTTTEEEEEEEESC
T ss_pred HHHhhC-CCCCcEEEEEcCCCCCCC-------c-------------------------HHHHHHHHHhcCCEEEEEEecC
Confidence 988742 234567888889876644 0 2346777788899999988876
Q ss_pred C------------------------ccChhchhhhhccccceEEEeCCC
Q 004303 360 D------------------------QVGVAELKVAVEKTGGLVVLSDSF 384 (762)
Q Consensus 360 ~------------------------~~~l~~~~~L~~~TGG~v~~~~~f 384 (762)
. ..+-..|..+|..|||..++..+-
T Consensus 150 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~ 198 (218)
T 3ibs_A 150 PEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNS 198 (218)
T ss_dssp TTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSS
T ss_pred CCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCC
Confidence 3 567788999999999998888763
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=6.2e-06 Score=84.85 Aligned_cols=147 Identities=18% Similarity=0.104 Sum_probs=103.8
Q ss_pred EEEEEEECCCChh-------HHHHHHHHHHHHhhc---CCCCcEEEEEEeCC-eEEEEEcCCCCCCCCeeEEecCCccCC
Q 004303 131 VFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVS 199 (762)
Q Consensus 131 ~~vFvID~s~~~~-------~l~~~~~~l~~~l~~---lp~~~~VglITfd~-~V~~y~l~~~~~~~~~~~V~~g~~~~~ 199 (762)
+.|||||+|.++. ++++.++++...++. ..+..+||||||.. ...+.
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 5799999999874 388888888777764 45678999999953 22221
Q ss_pred hHHHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH
Q 004303 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (762)
Q Consensus 200 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (762)
.|+......|...|+.|+. ...+.++.||+.|.
T Consensus 63 --------------------------------------~plT~D~~~il~aL~~l~~---------~G~T~l~~gL~~A~ 95 (268)
T 4b4t_W 63 --------------------------------------STFTAEFGKILAGLHDTQI---------EGKLHMATALQIAQ 95 (268)
T ss_dssp --------------------------------------EEEESCHHHHHHHHTTCCC---------CSCCCHHHHHHHHH
T ss_pred --------------------------------------cCCcchHHHHHHHhhhcCc---------CCCCChHHHHHHHH
Confidence 1111123456667777755 23568999999999
Q ss_pred HHhhccCCC-CCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004303 280 SLLGACVPG-SGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (762)
Q Consensus 280 ~ll~~~~~~-~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (762)
.+|+..... ..-||++|++|+-+. ..+-..++++++.+.+|.||++.++
T Consensus 96 ~aLk~~~~k~~~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 96 LTLKHRQNKVQHQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHhcccCCCceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 999854332 234799999985221 1122568899999999999999999
Q ss_pred CCccChhchhhhhccccc
Q 004303 359 LDQVGVAELKVAVEKTGG 376 (762)
Q Consensus 359 ~~~~~l~~~~~L~~~TGG 376 (762)
.+.-+-..|..+++..+|
T Consensus 146 ~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 146 EIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp SCCSSCCHHHHHHHHHCS
T ss_pred CCccchHHHHHHHHHhcC
Confidence 876677778888777655
No 12
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.14 E-value=6.8e-05 Score=74.97 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=106.0
Q ss_pred CCcEEEEEEECCCChhH--HHHHHHHHHHHhhcC---CCCcEEEEEEeCCeEEEEE-cCCCCCCCCeeEEecCCccCChH
Q 004303 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~y~-l~~~~~~~~~~~V~~g~~~~~~~ 201 (762)
.+.-++||||+|.+... ++.+++++...++.+ +.+.+||+|+|++.++..- +.
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~--------------------- 72 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS--------------------- 72 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT---------------------
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc---------------------
Confidence 56779999999998654 888888888887654 4578999999998775431 11
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHH
Q 004303 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (762)
Q Consensus 202 ~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (762)
+ | .......+...|+.|.... ......+.+|.||..|...
T Consensus 73 ---~--------------------------~-------~~~~~~~~~~~i~~l~~~~----~~~~g~T~~~~aL~~a~~~ 112 (223)
T 1q0p_A 73 ---E--------------------------A-------DSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSM 112 (223)
T ss_dssp ---S--------------------------G-------GGGCHHHHHHHHHTCCTTS----CSCTTCCCHHHHHHHHHHH
T ss_pred ---c--------------------------C-------CCCCHHHHHHHHHhccccc----ccCCCCccHHHHHHHHHHH
Confidence 0 0 0111335566677776420 0123567899999999999
Q ss_pred hhccCC-------CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHH------HHHHHhc
Q 004303 282 LGACVP-------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL------SKQLVHQ 348 (762)
Q Consensus 282 l~~~~~-------~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~l------a~~~~~~ 348 (762)
|..... .....|++++.|.++.|.-. ....+-.+++ +..+.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
T 1q0p_A 113 MSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP------------------------ITVIDEIRDLLYIGKDRKNPRED 168 (223)
T ss_dssp HCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCT------------------------HHHHHHHHHHTTCSCBTTBCCGG
T ss_pred hhccccccccccccCCeEEEEECCCCCCCCCCh------------------------HHHHHHHHHHHhhhhhhhhcccC
Confidence 873211 12235788899988876200 0000001111 1222345
Q ss_pred CcEEEEEEecCCccChhchhhhhccccc--eEEEeCCCC
Q 004303 349 GHVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFG 385 (762)
Q Consensus 349 ~isvDlf~~~~~~~~l~~~~~L~~~TGG--~v~~~~~f~ 385 (762)
||.|..+.++ ..++...|..++..||| .++..+++.
T Consensus 169 ~i~i~~igvG-~~~~~~~L~~iA~~~~G~~~~~~~~~~~ 206 (223)
T 1q0p_A 169 YLDVYVFGVG-PLVNQVNINALASKKDNEQHVFKVKDME 206 (223)
T ss_dssp GEEEEEEECS-SCCCHHHHHHHSCCCTTCCCEEETTC--
T ss_pred CcEEEEEEec-CcCCHHHHHHHhcCCCCCceEEEcCCHH
Confidence 6666666554 35788899999999999 777766554
No 13
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.14 E-value=9.9e-05 Score=72.97 Aligned_cols=163 Identities=9% Similarity=0.066 Sum_probs=107.1
Q ss_pred CCcEEEEEEECCCChh--HHHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCChH
Q 004303 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~~ 201 (762)
.+.-.+||||.|.+.. .++.+++.++..++.++ ++.+||+|+|++..+.. .+. .
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~-~------------------- 71 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK-D------------------- 71 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT-C-------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC-C-------------------
Confidence 4567999999999864 48999999999999886 57899999999876542 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH-H
Q 004303 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-S 280 (762)
Q Consensus 202 ~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~-~ 280 (762)
+ . .+..+...|++|+.. ....+.+|.||..|. .
T Consensus 72 ----------------------------------~----~-~~~~~~~~i~~l~~~-------gg~~T~~~~aL~~a~~~ 105 (202)
T 1ijb_A 72 ----------------------------------R----K-RPSELRRIASQVKYA-------GSQVASTSEVLKYTLFQ 105 (202)
T ss_dssp ----------------------------------C----C-CHHHHHHHHHTCCCC-------CBSCCCHHHHHHHHHHH
T ss_pred ----------------------------------C----C-CHHHHHHHHHhCcCC-------CCCcCcHHHHHHHHHHH
Confidence 0 0 123445556666541 112478999999997 4
Q ss_pred HhhccCC-CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004303 281 LLGACVP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (762)
Q Consensus 281 ll~~~~~-~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (762)
++....+ +..-.|++++.|.++.|. . + -..+.++.+.+.||.|-.+..+
T Consensus 106 ~~~~~~r~~~~~~iillTDG~~~~~~-----~--------------~----------~~~~~a~~l~~~gi~i~~igvG- 155 (202)
T 1ijb_A 106 IFSKIDRPEASRIALLLMASQEPQRM-----S--------------R----------NFVRYVQGLKKKKVIVIPVGIG- 155 (202)
T ss_dssp TSSSCSCTTSEEEEEEEECCCCCGGG-----C--------------T----------THHHHHHHHHHTTEEEEEEEES-
T ss_pred HhccCCCCCCCeEEEEEccCCCCccc-----h--------------H----------HHHHHHHHHHHCCCEEEEEecC-
Confidence 4442111 222357777888664320 0 0 0234566677788876666554
Q ss_pred CccChhchhhhhcc-ccceEEEeCCCCh
Q 004303 360 DQVGVAELKVAVEK-TGGLVVLSDSFGH 386 (762)
Q Consensus 360 ~~~~l~~~~~L~~~-TGG~v~~~~~f~~ 386 (762)
+.++..+|..++.. +||.+|..++|+.
T Consensus 156 ~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 156 PHANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp TTSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred CcCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 34688899999985 6889999888764
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.11 E-value=5.7e-05 Score=74.47 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=107.4
Q ss_pred CCcEEEEEEECCCChhHHHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.+.-.+||||+|.+...++.+++.++..++.+. ++.+||+|+|++..+.. .+. .
T Consensus 5 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~-~--------------------- 62 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN-T--------------------- 62 (200)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT-T---------------------
T ss_pred CcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC-C---------------------
Confidence 456789999999987778899999999998885 68999999999876542 111 0
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHH-h
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l-l 282 (762)
+ . .+..+...|+.++.. ....+.+|.||..|... +
T Consensus 63 --------------------------------~----~-~~~~~~~~i~~l~~~-------~G~~T~~~~al~~a~~~~~ 98 (200)
T 1v7p_C 63 --------------------------------Y----K-TKEEMIVATSQTSQY-------GGDLTNTFGAIQYARKYAY 98 (200)
T ss_dssp --------------------------------C----S-SHHHHHHHHHHCCCC-------CCSCCCHHHHHHHHHHHTT
T ss_pred --------------------------------c----C-CHHHHHHHHHhhhcc-------CCCCCcHHHHHHHHHHhhc
Confidence 0 0 122344555666531 01247899999999985 4
Q ss_pred hcc--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec-
Q 004303 283 GAC--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA- 358 (762)
Q Consensus 283 ~~~--~-~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~- 358 (762)
... . ++....|+++++|.++.+. -..+.+.++.+.||.|..+..+
T Consensus 99 ~~~~g~r~~~~~~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 99 SAASGGRRSATKVMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccccCCCCCCCeEEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 321 0 1223457888888665221 0234567777889888777663
Q ss_pred ---CCccC----hhchhhhhccccce-EEEeCCCCh
Q 004303 359 ---LDQVG----VAELKVAVEKTGGL-VVLSDSFGH 386 (762)
Q Consensus 359 ---~~~~~----l~~~~~L~~~TGG~-v~~~~~f~~ 386 (762)
...++ ..+|..++..|||. ++..++++.
T Consensus 148 ~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 148 YLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred cccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 23445 57799999999885 566677654
No 15
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.08 E-value=8.4e-05 Score=74.67 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=106.9
Q ss_pred CCcEEEEEEECCCChhHHHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.+.-.+||||+|.+...++.+++.++..++.+. ++.+||+|+|++.++.. .+.
T Consensus 21 ~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~----------------------- 77 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN----------------------- 77 (223)
T ss_dssp -CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT-----------------------
T ss_pred CcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC-----------------------
Confidence 456799999999988788999999999998874 68999999999876542 111
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHH-h
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l-l 282 (762)
+ + . ....+...|+.+... ....+.+|.||..|... +
T Consensus 78 -~------------------------------~----~-~~~~~~~~i~~l~~~-------gG~~T~~~~aL~~a~~~l~ 114 (223)
T 2b2x_A 78 -K------------------------------Y----S-STEEVLVAANKIVQR-------GGRQTMTALGIDTARKEAF 114 (223)
T ss_dssp -T------------------------------C----C-SHHHHHHHHTTCCCC-------CCSSCCHHHHHHHHHHTTS
T ss_pred -C------------------------------C----C-CHHHHHHHHHhhhcc-------CCCCccHHHHHHHHHHHhc
Confidence 0 0 0 011233344444321 11247899999999986 3
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004303 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (762)
Q Consensus 283 ~~---~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (762)
.. ..++....|+++++|.++.|. -..+.++.+.+.||.|..+..+.
T Consensus 115 ~~~~~~~~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 115 TEARGARRGVKKVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECG
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecC
Confidence 31 011223457888888765441 02345677778898887776654
Q ss_pred CccC---------hhchhhhhcc-ccceEEEeCCCCh
Q 004303 360 DQVG---------VAELKVAVEK-TGGLVVLSDSFGH 386 (762)
Q Consensus 360 ~~~~---------l~~~~~L~~~-TGG~v~~~~~f~~ 386 (762)
+ .+ ..+|..++.. |||.++..++++.
T Consensus 164 ~-~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 164 H-YNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp G-GC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred c-cccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 3 22 4789999998 9999999887754
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.04 E-value=0.00031 Score=68.44 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=106.3
Q ss_pred CCcEEEEEEECCCChh--HHHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCChH
Q 004303 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~~ 201 (762)
.+.-.+|+||.|.+.. .++.+++.+...++.++ ++.+||+|+|++.++.. .+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------ 64 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWN-VV------------------ 64 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-CC------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecC-CC------------------
Confidence 4567899999999864 38999999999998885 35899999999876542 111 00
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHH
Q 004303 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (762)
Q Consensus 202 ~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (762)
..+..+...++.++. ....+.+|.||..|...
T Consensus 65 ----------------------------------------~~~~~~~~~i~~l~~--------~~g~T~~~~aL~~a~~~ 96 (189)
T 1atz_A 65 ----------------------------------------PEKAHLLSLVDVMQR--------EGGPSQIGDALGFAVRY 96 (189)
T ss_dssp ----------------------------------------CCHHHHHHHHHTCCC--------CCCCCCHHHHHHHHHHH
T ss_pred ----------------------------------------CCHHHHHHHHHhCcC--------CCCcchHHHHHHHHHHH
Confidence 012344555666543 12457899999999998
Q ss_pred hhccC---CCCCcE-EEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEe
Q 004303 282 LGACV---PGSGAR-ILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (762)
Q Consensus 282 l~~~~---~~~ggk-Ii~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~ 357 (762)
+.... +....| ++++++|.++.. ..+.+..+.+.||.|..+..
T Consensus 97 l~~~~~g~r~~~~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igv 143 (189)
T 1atz_A 97 LTSEMHGARPGASKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGI 143 (189)
T ss_dssp HHSCCTTCCTTSEEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEE
T ss_pred HhccccCCCCCCCcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEc
Confidence 76311 111235 677888743210 12456677778888777766
Q ss_pred cCCccChhchhhhhccccc-eEEEeCCCCh
Q 004303 358 ALDQVGVAELKVAVEKTGG-LVVLSDSFGH 386 (762)
Q Consensus 358 ~~~~~~l~~~~~L~~~TGG-~v~~~~~f~~ 386 (762)
+. ..+..+|..++..++| .++...+|..
T Consensus 144 G~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 144 GD-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp SS-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CC-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 53 4688899999999875 5777777654
No 17
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.97 E-value=6.9e-05 Score=73.53 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=107.0
Q ss_pred CCcEEEEEEECCCChhH--HHHHHHHHHHHhhcC-CCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHH
Q 004303 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l-p~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~ 204 (762)
.+.-.+|+||+|.+... ++..++.++..++.+ +++.+||+|+|++.++..- . ..+..
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~-~-------------------~~~~~ 67 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-------------------FEEFR 67 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEE-C-------------------HHHHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEE-e-------------------cCccC
Confidence 45679999999998643 788899999999998 7899999999998865421 1 01111
Q ss_pred HHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH-HHhh
Q 004303 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-SLLG 283 (762)
Q Consensus 205 ~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~-~ll~ 283 (762)
.. ..+ ...|+.+.. ....+.+|.||..|. .++.
T Consensus 68 ~~---------------------------~~~-----------~~~i~~l~~--------~~g~T~~~~al~~a~~~l~~ 101 (198)
T 1n3y_A 68 RS---------------------------SNP-----------LSLLASVHQ--------LQGFTYTATAIQNVVHRLFH 101 (198)
T ss_dssp HC---------------------------SSG-----------GGGGTTCCC--------CCSCBCHHHHHHHHHTTTTS
T ss_pred CH---------------------------HHH-----------HHHHhcCcC--------CCCCchHHHHHHHHHHHHhC
Confidence 10 001 111222221 123678999999999 5544
Q ss_pred cc---CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004303 284 AC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (762)
Q Consensus 284 ~~---~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (762)
.. .++....|+++++|.++.++- . +.+.+..+.+.||.|..+..+.+
T Consensus 102 ~~~~~r~~~~~~iillTDG~~~~~~~----------------------~--------~~~~~~~~~~~gi~i~~igvG~~ 151 (198)
T 1n3y_A 102 ASYGARRDAAKILIVITDGKKEGDSL----------------------D--------YKDVIPMADAAGIIRYAIGVGLA 151 (198)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------HHHHHHHHHHTTCEEEEEEESGG
T ss_pred cccCCCCCCceEEEEECCCCCCCCcc----------------------c--------HHHHHHHHHHCCCEEEEEEcccc
Confidence 21 112345688889997763320 0 23456777888998888877654
Q ss_pred c---cChhchhhhhccccceE-EEeCCCCh
Q 004303 361 Q---VGVAELKVAVEKTGGLV-VLSDSFGH 386 (762)
Q Consensus 361 ~---~~l~~~~~L~~~TGG~v-~~~~~f~~ 386 (762)
. .+...|..++..|||.. +..+++..
T Consensus 152 ~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 152 FQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp GGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred ccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 3 36789999999999974 66666553
No 18
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.97 E-value=1.2e-06 Score=85.80 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCcEEEEEEECCCCh--hHHHHHHHHHHHHhhcC-CCCcEEEEEEeCC-eEEEEEcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIE--EEMSFLKSALSQAIDLL-PDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~VglITfd~-~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.+..++||||+|.+. ..++.+++++...++.+ +++.+||+|+|++ ..++
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~--------------------------- 56 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV--------------------------- 56 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB---------------------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE---------------------------
Confidence 567799999999987 34888999999998777 8889999999985 2210
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhh
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (762)
. .|+.. ....+...|+.|.. ...+.++.||..|..++.
T Consensus 57 ---~-----------------------~~~~~-------~~~~~~~~i~~l~~---------~g~T~~~~al~~a~~~l~ 94 (189)
T 2x31_A 57 ---L-----------------------LQPSR-------SLTQTKRQLQGLPG---------GGGTPLASGMEMAMVTAK 94 (189)
T ss_dssp ---C-----------------------TTTCS-------CHHHHHHHHHHCCC---------CBCCCCHHHHHHHHHHHH
T ss_pred ---e-----------------------cCCCC-------CHHHHHHHHhcCCC---------CCCCCHHHHHHHHHHHHH
Confidence 0 11100 12345566667654 235678999999999987
Q ss_pred ccC-CCCCcEEEEEecCCCCCCCc
Q 004303 284 ACV-PGSGARILAFVGGPSTEGPA 306 (762)
Q Consensus 284 ~~~-~~~ggkIi~F~sg~pt~GpG 306 (762)
... ++....|++++.|.++.|+.
T Consensus 95 ~~~~~~~~~~ivliTDG~~~~~~~ 118 (189)
T 2x31_A 95 QARSRGMTPTIALLTDGRGNIALD 118 (189)
T ss_dssp TCTTTCSSEEEEECCBSCCSSCCT
T ss_pred hccCCCCceEEEEECCCCCCCCCC
Confidence 421 12346888889999998753
No 19
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.97 E-value=0.00011 Score=73.19 Aligned_cols=162 Identities=11% Similarity=0.057 Sum_probs=106.8
Q ss_pred CCcEEEEEEECCCChhHHHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.+.-.+|+||.|.+...++.+++.+++.++.+. ++.+||+|+|++.++.. .+.
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~----------------------- 62 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN----------------------- 62 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT-----------------------
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc-----------------------
Confidence 467789999999988778899999999988774 68999999999876542 111
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHh-
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL- 282 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll- 282 (762)
+ + . ....+...|+.+... ....+.+|.||..|...+
T Consensus 63 -~------------------------------~----~-~~~~~~~~i~~l~~~-------~G~~T~~~~aL~~a~~~l~ 99 (213)
T 1pt6_A 63 -K------------------------------Y----S-STEEVLVAAKKIVQR-------GGRQTMTALGTDTARKEAF 99 (213)
T ss_dssp -T------------------------------C----S-SHHHHHHHHHTCCCC-------CCSSCCHHHHHHHHHHTTT
T ss_pred -c------------------------------c----C-CHHHHHHHHHhccCC-------CCCcccHHHHHHHHHHHhc
Confidence 0 0 0 112333444555431 112467999999999863
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004303 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (762)
Q Consensus 283 ~~---~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (762)
.. ..++....|++++.|.++.|. -+.+.+.++.+.||.|..+..+.
T Consensus 100 ~~~~~~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 100 TEARGARRGVKKVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp SGGGTCCTTCEEEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECH
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 31 011233457888888665431 12456677778888877776643
Q ss_pred Cc----cC----hhchhhhhcc-ccceEEEeCCCCh
Q 004303 360 DQ----VG----VAELKVAVEK-TGGLVVLSDSFGH 386 (762)
Q Consensus 360 ~~----~~----l~~~~~L~~~-TGG~v~~~~~f~~ 386 (762)
+. .+ ..+|..++.. |||.++..+++..
T Consensus 149 ~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 149 SYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 21 11 3688999998 7899999887764
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.93 E-value=6.8e-05 Score=73.49 Aligned_cols=163 Identities=13% Similarity=0.166 Sum_probs=103.5
Q ss_pred CCcEEEEEEECCCChh--HHHHHHHHHHHHhhcC-CCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHH
Q 004303 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~ 204 (762)
.+.-.+||||.|.+.. .++.+++.++..++.+ +++.+||+|+|++.++..- . ..+..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~-~-------------------l~~~~ 63 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHF-T-------------------FKEFQ 63 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEE-C-------------------HHHHH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEE-e-------------------cCCcC
Confidence 4567899999999864 3788899888888887 4678999999998775421 1 01111
Q ss_pred HHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHH-Hhh
Q 004303 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLG 283 (762)
Q Consensus 205 ~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~-ll~ 283 (762)
+ +..+...|+.|+. ....+.+|.||..|.. ++.
T Consensus 64 ~--------------------------------------~~~~~~~i~~l~~--------~~g~T~~~~aL~~a~~~l~~ 97 (194)
T 1mf7_A 64 N--------------------------------------NPNPRSLVKPITQ--------LLGRTHTATGIRKVVRELFN 97 (194)
T ss_dssp H--------------------------------------SCCHHHHHTTCCC--------CCSCBCHHHHHHHHHHTTTS
T ss_pred C--------------------------------------HHHHHHHHHhCcC--------CCCCchHHHHHHHHHHHhcC
Confidence 1 0012334445442 1236789999999996 443
Q ss_pred cc---CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004303 284 AC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (762)
Q Consensus 284 ~~---~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (762)
.. .++....|++++.|.++..+- + +.+.+.++.+.||.|..+..+.+
T Consensus 98 ~~~~~r~~~~~~iillTDG~~~~d~~---------------~---------------~~~~~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 98 ITNGARKNAFKILVVITDGEKFGDPL---------------G---------------YEDVIPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS---------------C---------------GGGTHHHHHHTTEEEEEEEESGG
T ss_pred cccCCCCCCCeEEEEEcCCCCCCCch---------------h---------------hHHHHHHHHHCCCEEEEEEeccc
Confidence 20 011224588889998771110 0 11235566778888777766543
Q ss_pred c---cChhchhhhhccc-cceEEEeCCCCh
Q 004303 361 Q---VGVAELKVAVEKT-GGLVVLSDSFGH 386 (762)
Q Consensus 361 ~---~~l~~~~~L~~~T-GG~v~~~~~f~~ 386 (762)
. .+..+|..++..+ +|.++..++++.
T Consensus 148 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 148 FRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp GCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 2 1368899999986 588888887754
No 21
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.92 E-value=0.00018 Score=70.65 Aligned_cols=144 Identities=22% Similarity=0.206 Sum_probs=92.9
Q ss_pred EEEEEEECCCChh-------HHHHHHHHHHHHhhc---CCCCcEEEEEEeCCe-EEEEEcCCCCCCCCeeEEecCCccCC
Q 004303 131 VFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL-VQVHELGGFGQIIPKTYVFKGSKDVS 199 (762)
Q Consensus 131 ~~vFvID~s~~~~-------~l~~~~~~l~~~l~~---lp~~~~VglITfd~~-V~~y~l~~~~~~~~~~~V~~g~~~~~ 199 (762)
..+|+||+|.++. +++..++++...+.. ..++.+||||+|.+. -++-
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~---------------------- 61 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL---------------------- 61 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEE----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEe----------------------
Confidence 5799999999864 377777776654432 234579999999752 2111
Q ss_pred hHHHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH
Q 004303 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (762)
Q Consensus 200 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (762)
.| +......+...|+.+.. ...+++|.||..|.
T Consensus 62 -------------------------------~p-------lT~d~~~i~~~L~~l~~---------~g~t~l~~aL~~A~ 94 (192)
T 2x5n_A 62 -------------------------------ST-------LTRDYGKFLSAMHDLPV---------RGNAKFGDGIQIAQ 94 (192)
T ss_dssp -------------------------------EE-------EESCHHHHHHHHTTCCC---------CSCCCHHHHHHHHH
T ss_pred -------------------------------cC-------CCCCHHHHHHHHHcCCC---------CCCchHHHHHHHHH
Confidence 11 11123455666666543 13578999999999
Q ss_pred HHhhccC-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004303 280 SLLGACV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (762)
Q Consensus 280 ~ll~~~~-~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (762)
.+|+... +....||++|+++.-+.+ ..-..++++.+.+.||.|+++.++
T Consensus 95 ~~l~~~~~~~~~~riiil~~~~~~~~------------------------------~~~~~~~a~~lk~~gi~v~~Ig~G 144 (192)
T 2x5n_A 95 LALKHRENKIQRQRIVAFVGSPIVED------------------------------EKNLIRLAKRMKKNNVAIDIIHIG 144 (192)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSSC------------------------------HHHHHHHHHHHHHTTEEEEEEEES
T ss_pred HHHHhccccCCCceEEEEEECCCCCC------------------------------chhHHHHHHHHHHCCCEEEEEEeC
Confidence 9998521 123567888886521100 111457899999999999999998
Q ss_pred CCccChhchhhhhccc
Q 004303 359 LDQVGVAELKVAVEKT 374 (762)
Q Consensus 359 ~~~~~l~~~~~L~~~T 374 (762)
.+.-+-. |..+++.+
T Consensus 145 ~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 145 ELQNESA-LQHFIDAA 159 (192)
T ss_dssp CC---CH-HHHHHHHH
T ss_pred CCCccHH-HHHHHHhc
Confidence 7665556 88888874
No 22
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.92 E-value=7.7e-05 Score=84.69 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=112.9
Q ss_pred CCcEEEEEEECCCChhH--HHHHHHHHHHHhhcC---CCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHH
Q 004303 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ 202 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~ 202 (762)
.+.-++||||.|.+... ++.++++++..++.+ +++.+||||+|++..++.- . ..
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~-~-l~------------------- 66 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM-S-VL------------------- 66 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE-C-TT-------------------
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE-e-cc-------------------
Confidence 45678999999998654 889999999998877 7889999999998776531 1 00
Q ss_pred HHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHh
Q 004303 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (762)
Q Consensus 203 l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (762)
+.. ......+...|+.|+... ......+.++.||..|..++
T Consensus 67 --~~~---------------------------------~~~~~~~~~~l~~l~~~~----~~~~ggT~~~~aL~~a~~~l 107 (509)
T 2odp_A 67 --NDN---------------------------------SRDMTEVISSLENANYKD----HENGTGTNTYAALNSVYLMM 107 (509)
T ss_dssp --SGG---------------------------------GGCHHHHHHHHHTCCGGG----GTTCCSCCHHHHHHHHHHHH
T ss_pred --CCC---------------------------------CCCHHHHHHHHHhccccc----CCCCCCccHHHHHHHHHHHH
Confidence 000 001335566666665421 00135678999999999998
Q ss_pred hccCC----------CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHH------
Q 004303 283 GACVP----------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLV------ 346 (762)
Q Consensus 283 ~~~~~----------~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~------ 346 (762)
..... .....|+++++|.++.|. .. .+.++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-~~------------------------------~~~~~~~~~~~~~~ 156 (509)
T 2odp_A 108 NNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-SP------------------------------KTAVDHIREILNIN 156 (509)
T ss_dssp HHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-CT------------------------------HHHHHHHHHHTTCC
T ss_pred hhcccccccccccccccceEEEEECCCCccCCC-Ch------------------------------hHHHHHHHHHhhcc
Confidence 52100 012457888999877651 00 01111111
Q ss_pred ---hcCcEEEEEEecCCccChhchhhhhccccce--EEEeCCCChhhhHHHHHHHh
Q 004303 347 ---HQGHVLDLFACALDQVGVAELKVAVEKTGGL--VVLSDSFGHAVFKDSVRRVF 397 (762)
Q Consensus 347 ---~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~--v~~~~~f~~~~~~~~l~~~l 397 (762)
+.++.|..+..+.+..+..+|..+|..+||. +++.++++ .+.+-+.+++
T Consensus 157 ~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~--~l~~~~~~i~ 210 (509)
T 2odp_A 157 QKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTK--ALHQVFEHML 210 (509)
T ss_dssp STTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHH--HHHHHHHHHE
T ss_pred ccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHH--HHHHHHHhhh
Confidence 5677776666654448999999999999998 66666543 3334344443
No 23
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.90 E-value=0.00041 Score=66.82 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=98.6
Q ss_pred CCcEEEEEEECCCChhH-HHHHHHHHHHHhhc-CCCCcEEEEEEeCCeEEEEE-cCCCCCCCCeeEEecCCccCChHHHH
Q 004303 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQLL 204 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~-lp~~~~VglITfd~~V~~y~-l~~~~~~~~~~~V~~g~~~~~~~~l~ 204 (762)
.+.-++|+||.|.+... ....++.+++.+.. +.++.+||+|+|++..+..- +. .
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~-~---------------------- 61 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT-G---------------------- 61 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE-C----------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC-C----------------------
Confidence 46679999999998654 22223333333333 33689999999998665421 11 0
Q ss_pred HHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhc
Q 004303 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (762)
Q Consensus 205 ~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 284 (762)
.+..+...|+.|... .+ ...+.++.||..|...+..
T Consensus 62 --------------------------------------~~~~~~~~l~~l~~~---~~---~g~T~~~~al~~a~~~l~~ 97 (182)
T 1shu_X 62 --------------------------------------DRGKISKGLEDLKRV---SP---VGETYIHEGLKLANEQIQK 97 (182)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHhcccC---CC---CCCchHHHHHHHHHHHHHh
Confidence 122344455555431 11 2367899999999999864
Q ss_pred cC-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccC
Q 004303 285 CV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (762)
Q Consensus 285 ~~-~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~ 363 (762)
.. ++....|+++++|.++.+ ......+.+..+...|+.|..+..+ ..+
T Consensus 98 ~~~~~~~~~iiliTDG~~~~~-----------------------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~ 146 (182)
T 1shu_X 98 AGGLKTSSIIIALTDGKLDGL-----------------------------VPSYAEKEAKISRSLGASVYCVGVL--DFE 146 (182)
T ss_dssp HTGGGSCEEEEEEECCCCCTT-----------------------------HHHHHHHHHHHHHHTTCEEEEEECS--SCC
T ss_pred ccCCCCCeEEEEECCCCcCCC-----------------------------CchhHHHHHHHHHhCCCEEEEEeCC--cCC
Confidence 21 124467888888865421 1122345677778889887777665 568
Q ss_pred hhchhhhhccccceEEEeCCCC
Q 004303 364 VAELKVAVEKTGGLVVLSDSFG 385 (762)
Q Consensus 364 l~~~~~L~~~TGG~v~~~~~f~ 385 (762)
-..|..++..|||..+.-++|.
T Consensus 147 ~~~L~~ia~~~~~~~~~~~~~~ 168 (182)
T 1shu_X 147 QAQLERIADSKEQVFPVKGGFQ 168 (182)
T ss_dssp HHHHHHHSSSGGGEEESSSTTH
T ss_pred HHHHHHHhCCCCceEEccCCHH
Confidence 8899999999987433322443
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.87 E-value=0.00022 Score=80.50 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=110.3
Q ss_pred cEEEEEEECCCChh--HHHHHHHHHHHHhhcC---CCCcEEEEEEeCCeEEEEE-cCCCCCCCCeeEEecCCccCChHHH
Q 004303 130 PVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 130 p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~y~-l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.-.+||||.|.+.. +++.++++++..++.+ +++.+||||+|++..++.- +.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~----------------------- 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS----------------------- 58 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-----------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc-----------------------
Confidence 45799999999864 4888888888888764 5578999999998765431 11
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhh
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (762)
+ | ....+..+...|+.|..... .....+.+|.||..|..++.
T Consensus 59 -~--------------------------~-------~~~~~~~~~~~l~~l~~~~~----~~~g~T~~~~al~~a~~~l~ 100 (497)
T 1rrk_A 59 -E--------------------------A-------DSSNADWVTKQLNEINYEDH----KLKSGTNTKKALQAVYSMMS 100 (497)
T ss_dssp -S--------------------------G-------GGGCHHHHHHHHHHCCGGGS----CCTTCCCHHHHHHHHHHHHC
T ss_pred -c--------------------------c-------cccCHHHHHHHHHhCcCccc----cccCccCHHHHHHHHHHHhh
Confidence 0 0 01123456667777764210 01346789999999999984
Q ss_pred ccC-------CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEE
Q 004303 284 ACV-------PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFA 356 (762)
Q Consensus 284 ~~~-------~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~ 356 (762)
... +.....|+++++|.++.|....... +.++...++. ..+..+.+.||.|..+.
T Consensus 101 ~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~~i~v~~ig 162 (497)
T 1rrk_A 101 WPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDLLYIG---------------KDRKNPREDYLDVYVFG 162 (497)
T ss_dssp CC------CGGGCEEEEEEEECSCCCSSSCTHHHH---HHHHHHTTCS---------------SCC-CCCGGGEEEEEEE
T ss_pred hhhccccccccccceEEEEEeCCCcccCCChhHHH---HHHHHHhhhh---------------cccccchhcCeeEEEec
Confidence 210 1133568889999888764110000 0000000000 00111223366666555
Q ss_pred ecCCccChhchhhhhccccc--eEEEeCCCChhhhHHHHHHHh
Q 004303 357 CALDQVGVAELKVAVEKTGG--LVVLSDSFGHAVFKDSVRRVF 397 (762)
Q Consensus 357 ~~~~~~~l~~~~~L~~~TGG--~v~~~~~f~~~~~~~~l~~~l 397 (762)
.+ +.++...|..+|..+|| .++..++++ .+.+-+.+.+
T Consensus 163 vG-~~~~~~~L~~iA~~~~g~~~~~~~~~~~--~l~~~~~~~i 202 (497)
T 1rrk_A 163 VG-PLVNQVNINALASKKDNEQHVCKVKDME--CLEDVFYQMI 202 (497)
T ss_dssp CS-SSCCHHHHHHHSCCCTTCCCEEETTCHH--HHHHHHHHHS
T ss_pred CC-CccCHHHHHHHhcCCCCcceEEEeCCHH--HHhhhhhhcc
Confidence 53 34788999999999999 777766543 3344444444
No 25
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.78 E-value=0.00038 Score=72.58 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=108.2
Q ss_pred CCcEEEEEEECCCChh--HH-HHHHHHHHHHhhcCCC---CcEEEEEEeCCeEEE-EEcCCCCCCCCeeEEecCCccCCh
Q 004303 128 VPPVFMFVVDTCIIEE--EM-SFLKSALSQAIDLLPD---NSLVGLITFGTLVQV-HELGGFGQIIPKTYVFKGSKDVSK 200 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l-~~~~~~l~~~l~~lp~---~~~VglITfd~~V~~-y~l~~~~~~~~~~~V~~g~~~~~~ 200 (762)
.+.-++||||.|.+.. .+ +.++++++..++.++. +.+||||+|++.++. +.+. ..
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~~----------------- 81 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLH-SD----------------- 81 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEEC-SS-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcc-cc-----------------
Confidence 4567999999999865 35 8899999999998875 789999999987643 2333 11
Q ss_pred HHHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHH
Q 004303 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (762)
Q Consensus 201 ~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ 280 (762)
. ...+..+...|+.|.... . ....+.+|.||..|..
T Consensus 82 ------------------------------~---------~~~~~~l~~~i~~l~~~~--~---~~G~T~~~~aL~~a~~ 117 (281)
T 4hqf_A 82 ------------------------------A---------SKNKEKALIIIKSLLSTN--L---PYGKTSLTDALLQVRK 117 (281)
T ss_dssp ------------------------------C---------SSCHHHHHHHHHHHHHTT--G---GGCSCCHHHHHHHHHH
T ss_pred ------------------------------C---------ccCHHHHHHHHHHHhhcc--C---CCCCccHHHHHHHHHH
Confidence 0 001223444555554210 1 1235789999999988
Q ss_pred HhhccC--CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004303 281 LLGACV--PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (762)
Q Consensus 281 ll~~~~--~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (762)
.+.... ++....|+++++|.++.+ .-..+.+..+.+.||.|-.+..+
T Consensus 118 ~l~~~~~r~~~~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG 166 (281)
T 4hqf_A 118 HLNDRINRENANQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIG 166 (281)
T ss_dssp HHHTSCCCTTCEEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHhccCCCCCCEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 776310 012235777788865411 01234566777888877777665
Q ss_pred CCccChhchhhhhcc--ccc--eEEEeCCCChh
Q 004303 359 LDQVGVAELKVAVEK--TGG--LVVLSDSFGHA 387 (762)
Q Consensus 359 ~~~~~l~~~~~L~~~--TGG--~v~~~~~f~~~ 387 (762)
. .++-..|..++.. +|| .++...+|+.-
T Consensus 167 ~-~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L 198 (281)
T 4hqf_A 167 Q-GINVAFNRFLVGCHPSDGKCNLYADSAWENV 198 (281)
T ss_dssp S-SCCHHHHHHHTTSCSSSSCCTTEEEECGGGH
T ss_pred C-ccCHHHHHhhhCCCCCCCCCceEEecchhhh
Confidence 3 3677888889876 566 78888888753
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.75 E-value=0.00039 Score=67.24 Aligned_cols=154 Identities=12% Similarity=0.184 Sum_probs=97.3
Q ss_pred CcEEEEEEECCCChh--HHHHHHHHHHHHhhcC-CCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHH
Q 004303 129 PPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (762)
Q Consensus 129 ~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~ 205 (762)
|.-.+|+||.|.+.. .++.+++.++..++.+ +++.+||+|+|++.++.. .. . .+..+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~-l------------------~~~~~ 61 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD-F------------------SDYVK 61 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC-H------------------HHHHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec-C------------------cccCC
Confidence 346899999999854 3889999999999888 456899999999877642 11 0 11110
Q ss_pred HhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHH-Hhhc
Q 004303 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLGA 284 (762)
Q Consensus 206 ~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~-ll~~ 284 (762)
+..+..+++.++.. ...+.+|.||..|.. ++..
T Consensus 62 --------------------------------------~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~~ 95 (179)
T 1mjn_A 62 --------------------------------------RKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFRE 95 (179)
T ss_dssp --------------------------------------HCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSSG
T ss_pred --------------------------------------HHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhccc
Confidence 01233445555441 135789999999985 5542
Q ss_pred c--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCc
Q 004303 285 C--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (762)
Q Consensus 285 ~--~-~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~ 361 (762)
. . ++..-.|+++++|.++.|.- . + ...|+.|-.+..+.+
T Consensus 96 ~~g~r~~~~~~iillTDG~~~~~~~----------------~---------~------------~~~~i~i~~igvG~~- 137 (179)
T 1mjn_A 96 ELGARPDATKVLIIITDGEATDSGN----------------I---------D------------AAKDIIRYIIGIGKH- 137 (179)
T ss_dssp GGTCCTTSEEEEEEEESSCCSSCSC----------------C---------G------------GGTTSEEEEEEESGG-
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCcc----------------h---------H------------HHCCCEEEEEEcccc-
Confidence 1 0 11123578889998765420 0 0 124666655555432
Q ss_pred cC----hhchhhhhccccc-eEEEeCCCCh
Q 004303 362 VG----VAELKVAVEKTGG-LVVLSDSFGH 386 (762)
Q Consensus 362 ~~----l~~~~~L~~~TGG-~v~~~~~f~~ 386 (762)
.+ ..+|..++..+|| .++..++|+.
T Consensus 138 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 138 FQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp GCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 33 3789999999987 5778787764
No 27
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.66 E-value=0.00072 Score=69.87 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=106.5
Q ss_pred CCcEEEEEEECCCChhH--H-HHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCCh
Q 004303 128 VPPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSK 200 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l-~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~ 200 (762)
.+.-++||||.|.+... + +.+++.++..++.+. ++.+||||+|++.++.. .+.
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~-------------------- 76 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLG-------------------- 76 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTT--------------------
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecC--------------------
Confidence 45668999999998653 6 588999999999886 67999999999876542 111
Q ss_pred HHHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHH
Q 004303 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (762)
Q Consensus 201 ~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ 280 (762)
+... ..+..+...|+.|+... . ....+.+|.||..|..
T Consensus 77 -~~~~------------------------------------~~~~~~~~~i~~l~~~~--~---~~G~T~~~~AL~~a~~ 114 (266)
T 4hqo_A 77 -SGQS------------------------------------IDKRQALSKVTELRKTY--T---PYGTTSMTAALDEVQK 114 (266)
T ss_dssp -SHHH------------------------------------HCHHHHHHHHHHHHHHC--C---CCSCCCHHHHHHHHHH
T ss_pred -CCCc------------------------------------cCHHHHHHHHHHhhhcc--C---CCCCCCHHHHHHHHHH
Confidence 0000 01234555666664100 0 1236789999999999
Q ss_pred Hhhcc-C-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004303 281 LLGAC-V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (762)
Q Consensus 281 ll~~~-~-~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (762)
++... . ++....|+++++|.++.+ .-..+.+.++.+.||.|-.+.++
T Consensus 115 ~l~~~~~r~~~~~~iIllTDG~~~d~-------------------------------~~~~~~a~~l~~~gi~i~~iGiG 163 (266)
T 4hqo_A 115 HLNDRVNREKAIQLVILMTDGVPNSK-------------------------------YRALEVANKLKQRNVRLAVIGIG 163 (266)
T ss_dssp HHHTTCSCTTSEEEEEEEECSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEECS
T ss_pred HHhhccccCCCCeEEEEEccCCCCCc-------------------------------hHHHHHHHHHHHCCCEEEEEecC
Confidence 88741 0 112245777788865410 11335677788889877777665
Q ss_pred CCccChhchhhhhccc--cc--eEEEeCCCC
Q 004303 359 LDQVGVAELKVAVEKT--GG--LVVLSDSFG 385 (762)
Q Consensus 359 ~~~~~l~~~~~L~~~T--GG--~v~~~~~f~ 385 (762)
. ..+-..|..++... || .++++.+|+
T Consensus 164 ~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 164 Q-GINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp S-SCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred c-ccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 3 56667778888775 33 777777765
No 28
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.55 E-value=0.0022 Score=61.72 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=98.6
Q ss_pred CCcEEEEEEECCCChhH-HHHHHHHHHHHhhc-CCCCcEEEEEEeCCeEEEEE-cCCCCCCCCeeEEecCCccCChHHHH
Q 004303 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQLL 204 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~-lp~~~~VglITfd~~V~~y~-l~~~~~~~~~~~V~~g~~~~~~~~l~ 204 (762)
.+.-++|+||.|.+... .+.+++.+++.+.. +.++.+||+|+|++.++..- +.
T Consensus 6 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~------------------------ 61 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT------------------------ 61 (185)
T ss_dssp SEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE------------------------
T ss_pred CCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC------------------------
Confidence 44568999999998743 55555565655554 34589999999987665421 11
Q ss_pred HHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhc
Q 004303 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (762)
Q Consensus 205 ~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 284 (762)
+.+..+...|+.|+.. .+ ...+.+|.||..|...+..
T Consensus 62 -------------------------------------~~~~~~~~~i~~l~~~---~~---~g~T~~~~al~~a~~~l~~ 98 (185)
T 3n2n_F 62 -------------------------------------EDREQIRQGLEELQKV---LP---GGDTYMHEGFERASEQIYY 98 (185)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHHHhhh---cC---CCCccHHHHHHHHHHHHhh
Confidence 1133455556666541 11 3457899999999997721
Q ss_pred c-C--CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCc
Q 004303 285 C-V--PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (762)
Q Consensus 285 ~-~--~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~ 361 (762)
. . ......|++++.|.++.++ ..-..+.+..+.+.||.|..+..+ .
T Consensus 99 ~~~~~~~~~~~iillTDG~~~~~~-----------------------------~~~~~~~~~~~~~~gi~i~~igvg--~ 147 (185)
T 3n2n_F 99 ENRQGYRTASVIIALTDGELHEDL-----------------------------FFYSEREANRSRDLGAIVYAVGVK--D 147 (185)
T ss_dssp HHTTCBCEEEEEEEEECCCCCHHH-----------------------------HHHHHHHHHHHHHTTEEEEEEECS--S
T ss_pred ccccCCCCCcEEEEEcCCCCCCCc-----------------------------ccchHHHHHHHHHCCCEEEEEEec--c
Confidence 0 0 0122467777887553221 001134677788888777666664 6
Q ss_pred cChhchhhhhccccceEEEeCC
Q 004303 362 VGVAELKVAVEKTGGLVVLSDS 383 (762)
Q Consensus 362 ~~l~~~~~L~~~TGG~v~~~~~ 383 (762)
.+-.+|..++.. +|.+|...+
T Consensus 148 ~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 148 FNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp CCHHHHTTTSSS-GGGEEEHHH
T ss_pred CCHHHHHHHhCC-CCCeEEecc
Confidence 788899999965 577777654
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.55 E-value=0.00022 Score=84.76 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=106.1
Q ss_pred CcEEEEEEECCCChhH--HHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEEE-cCCCCCCCCeeEEecCCccCChHH
Q 004303 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQ 202 (762)
Q Consensus 129 ~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y~-l~~~~~~~~~~~V~~g~~~~~~~~ 202 (762)
+.-++||||.|.+... ++.+++++++.++.++ .+.+||||+|++.+.+.- +. .
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~-------------------- 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E-------------------- 301 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-S--------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeec-c--------------------
Confidence 4459999999998643 8888999888887764 468999999998664421 11 0
Q ss_pred HHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHh
Q 004303 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (762)
Q Consensus 203 l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (762)
+ . ...++.+.+.|++|+.. . ......+.+|.||..|...|
T Consensus 302 ----~-----------------------~---------~~~~~~~~~~i~~l~~~---~-~~~~ggT~~~~aL~~a~~~l 341 (741)
T 3hrz_D 302 ----A-----------------------D---------SSNADWVTKQLNEINYE---D-HKLKSGTNTKKALQAVYSMM 341 (741)
T ss_dssp ----G-----------------------G---------GGCHHHHHHHHTTCCGG---G-GSSSCCCCHHHHHHHHHHHH
T ss_pred ----c-----------------------C---------CcCHHHHHHHHHhcccc---c-ccCCCChHHHHHHHHHHHHH
Confidence 0 0 00133455566666521 0 00234678999999999998
Q ss_pred hccC-CCCC------cEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEE
Q 004303 283 GACV-PGSG------ARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLF 355 (762)
Q Consensus 283 ~~~~-~~~g------gkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf 355 (762)
.... ...+ -.|+++|+|.++.|..-.... +.+++..++ .+.++.+.+.||.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~---~~i~~~~~~---------------~~~a~~~~~~gi~i~~i 403 (741)
T 3hrz_D 342 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDLLYI---------------GKDRKNPREDYLDVYVF 403 (741)
T ss_dssp CCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHH---HHHHHHTTC---------------SSCTTCCCGGGEEEEEE
T ss_pred hhhhhccccchhccCeEEEEECCCccccCCCchHHH---HHHHHHhhc---------------ccccccccccCeeEEEE
Confidence 3100 0111 248899999998774111100 000000000 01122344456666555
Q ss_pred EecCCccChhchhhhhccccce--EEEeCCCC
Q 004303 356 ACALDQVGVAELKVAVEKTGGL--VVLSDSFG 385 (762)
Q Consensus 356 ~~~~~~~~l~~~~~L~~~TGG~--v~~~~~f~ 385 (762)
..+ +.++-.+|..|+..+||. ++..++++
T Consensus 404 gvG-~~~~~~~L~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 404 GVG-PLVNQVNINALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp ECS-SSCCHHHHHHHSCCCTTCCCEECBSSHH
T ss_pred eCC-CcCCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 554 347889999999999996 66666654
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.35 E-value=0.0034 Score=61.62 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCcEEEEEEECCCChh--HHHHHHHHHHHHhhcC---CCCcEEEEEEeCCeEEE
Q 004303 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQV 176 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~ 176 (762)
.+--.+|+||.|.+.. .++.+++.+++.++.+ +++.+||+|+|++.++.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 5567999999999864 3889999999999988 57899999999987764
No 31
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.31 E-value=0.00042 Score=60.82 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=62.1
Q ss_pred cccceecccCC--CCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHH-
Q 004303 629 QPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM- 705 (762)
Q Consensus 629 yP~L~~~~~~~--~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~- 705 (762)
.|+||.+...+ ....++++.++|.++.+||||+|..||+|+|+.++. .+..+ ....++.|.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~-----------~Ek~~-----A~~~a~~i~~ 65 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNR-----------YERLK-----ATQVSKGIRD 65 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCH-----------HHHHH-----HHHHHHHHHH
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCH-----------HHHHH-----HHHHHHHHHh
Confidence 37888887543 245778999999999999999999999999998643 11111 123445555
Q ss_pred HcCCCCcEEEEEccCCchhhhHHhh
Q 004303 706 KERFPVPRLVICDQHGSQVGSYHNV 730 (762)
Q Consensus 706 ~~R~~~p~~~~~~~g~sq~rf~~~l 730 (762)
.+|.....+.++++|.....|...|
T Consensus 66 ~er~~~~~i~~v~eG~E~~~Fw~~L 90 (104)
T 1kcq_A 66 NERSGRARVHVSEEGTEPEAMLQVL 90 (104)
T ss_dssp HTSTTCSEEEEEETTCCCHHHHHHH
T ss_pred hccCCCCcEEEEeCCCCCHHHHHHc
Confidence 3576667799999997666787666
No 32
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.28 E-value=0.0068 Score=58.24 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=89.1
Q ss_pred CCcEEEEEEECCCChh--HHHHHHHHHHHHhhcCC---CCcEEEEEEeCCeEEEE-EcCCCCCCCCeeEEecCCccCChH
Q 004303 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~V~~g~~~~~~~ 201 (762)
.+.-++|+||.|.+.. +++.+++.++..++.++ ++.+||+|+|++.++.. .+. .
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~-~------------------- 75 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ-S------------------- 75 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC-C-------------------
Confidence 4678999999999864 48899999999998885 45899999999877542 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHH
Q 004303 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (762)
Q Consensus 202 ~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (762)
+ . ...+..+...|+.++.. ...+.+|.||..|...
T Consensus 76 -----~-----------------------~---------~~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 76 -----P-----------------------N---------AVDKQLAAHAVLDMPYK--------KGSTNTSDGLKACKQI 110 (178)
T ss_dssp -----G-----------------------G---------GSCHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHH
T ss_pred -----C-----------------------C---------ccCHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHH
Confidence 0 0 00133555666676531 2357899999999997
Q ss_pred hhcc----CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEe
Q 004303 282 LGAC----VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (762)
Q Consensus 282 l~~~----~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~ 357 (762)
+... .++....|+++++|.++.|. -..+.++++.+.||.|-.+..
T Consensus 111 l~~~~~g~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igv 159 (178)
T 2xgg_A 111 LFTGSRPGREHVPKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAV 159 (178)
T ss_dssp HHHCCCTTCTTSCEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEEC
T ss_pred hcCcccCCCCCCCEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEc
Confidence 6321 11233568888888665331 123456777778887777665
Q ss_pred cCCccChhch
Q 004303 358 ALDQVGVAEL 367 (762)
Q Consensus 358 ~~~~~~l~~~ 367 (762)
+ +.++-..|
T Consensus 160 G-~~~~~~~l 168 (178)
T 2xgg_A 160 G-HYVAAALV 168 (178)
T ss_dssp C---------
T ss_pred C-CcCCHHHH
Confidence 4 33444444
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.96 E-value=0.0021 Score=73.85 Aligned_cols=144 Identities=13% Similarity=0.016 Sum_probs=87.5
Q ss_pred cEEEEEEECCCChh--------HHHHHHHHHHHHhhc---CCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccC
Q 004303 130 PVFMFVVDTCIIEE--------EMSFLKSALSQAIDL---LPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDV 198 (762)
Q Consensus 130 p~~vFvID~s~~~~--------~l~~~~~~l~~~l~~---lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~ 198 (762)
-..+|+||+|.++. .|+.+++++...++. ..++-+||||+|++.-.- +.++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~-----~plt~------------ 70 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTD-----NPLSG------------ 70 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB-----STTCT------------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCC-----Ccccc------------
Confidence 46899999998753 488899999888884 567889999999865321 11000
Q ss_pred ChHHHHHHhhcccCCCCCCCccccCccCCCCcccccceEEechhc-HHHHHHHHHH-ccCCCCCCCCCCCCcchhhHHHH
Q 004303 199 SKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDC-EFTLNSVLEE-LQKDPWPVPPDQRSTRCTGTALS 276 (762)
Q Consensus 199 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~-~~~i~~ll~~-L~~~~~~~~~~~~~~~~~G~Al~ 276 (762)
| +-+ . .. ..+.++... ...+. -|+. |.. + ....++|.||.
T Consensus 71 ---d--~~y--~-------------------~i---~vl~~l~~~~~~~l~-~l~~~l~~-------~-~~~t~i~~al~ 112 (565)
T 1jey_B 71 ---G--DQY--Q-------------------NI---TVHRHLMLPDFDLLE-DIESKIQP-------G-SQQADFLDALI 112 (565)
T ss_dssp ---T--TCS--T-------------------TE---EEEEEEECCCHHHHH-HHHTTCCC-------C-SSCCCHHHHHH
T ss_pred ---c--cCC--C-------------------ce---EEeecCCCCCHHHHH-HHHhhccC-------C-CccccHHHHHH
Confidence 0 001 0 00 122233221 12232 2333 422 1 23568999999
Q ss_pred HHHHHhhccCC--CCC-cEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEE
Q 004303 277 IAASLLGACVP--GSG-ARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLD 353 (762)
Q Consensus 277 ~A~~ll~~~~~--~~g-gkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvD 353 (762)
+|..++..... +.+ -||++||+|--+.|. + -..++|+.+.+.||.|+
T Consensus 113 ~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~--------------------~----------~~~~~a~~l~~~gI~i~ 162 (565)
T 1jey_B 113 VSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK--------------------S----------QLDIIIHSLKKCDISLQ 162 (565)
T ss_dssp HHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC--------------------T----------THHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHhhcccccccEEEEEeCCCCCCCH--------------------H----------HHHHHHHHHHhcCcEEE
Confidence 99999985321 123 479999988543321 0 13567999999999999
Q ss_pred -EEEec
Q 004303 354 -LFACA 358 (762)
Q Consensus 354 -lf~~~ 358 (762)
++.++
T Consensus 163 ~vig~g 168 (565)
T 1jey_B 163 FFLPFS 168 (565)
T ss_dssp EEESSC
T ss_pred EEeccC
Confidence 66444
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.95 E-value=0.0016 Score=80.15 Aligned_cols=163 Identities=14% Similarity=0.164 Sum_probs=102.7
Q ss_pred CCcEEEEEEECCCChh--HHHHHHHHHHHHhhcCCCC-cEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHH
Q 004303 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLPDN-SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp~~-~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~ 204 (762)
.+.-.+||||.|.+.. +++.+++.+++.++.+.++ .+||||+|++.++..- . . .+..
T Consensus 129 ~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~-~-l------------------t~~~ 188 (1095)
T 3k6s_A 129 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-F------------------EEFR 188 (1095)
T ss_dssp CCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEE-C-S------------------HHHH
T ss_pred CCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEe-c-C------------------cccC
Confidence 3456899999999754 4899999999999998754 8999999998775531 1 0 1111
Q ss_pred HHhhcccCCCCCCCccccCccCCCCcccccceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHh-h
Q 004303 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL-G 283 (762)
Q Consensus 205 ~~~~~~~~~~~p~~~~~~~~~~~~~~~pl~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll-~ 283 (762)
+. .. +...++.|+.. ...+.+|.||..|...+ .
T Consensus 189 ~~---------------------------~~-----------l~~ai~~i~~~--------gG~T~~g~AL~~a~~~lf~ 222 (1095)
T 3k6s_A 189 RS---------------------------SN-----------PLSLLASVHQL--------QGFTYTATAIQNVVHRLFH 222 (1095)
T ss_dssp SC---------------------------SC-----------GGGGTTTCCCC--------CSCBCHHHHHHHHHTTTTS
T ss_pred CH---------------------------HH-----------HHHHHhhhhcc--------cCCChHHHHHHHHHHhhcc
Confidence 10 00 11122333321 23578999999997744 2
Q ss_pred cc--CC-CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004303 284 AC--VP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (762)
Q Consensus 284 ~~--~~-~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (762)
.. .+ +..-.|+++|+|.++..+. -+.+.+.++.+.||.+-.+..+..
T Consensus 223 ~~~g~R~~~~kviIllTDG~~~~d~~------------------------------~~~~~a~~~r~~GI~i~aIGVG~~ 272 (1095)
T 3k6s_A 223 ASYGARRDAAKILIVITDGKKEGDSL------------------------------DYKDVIPMADAAGIIRYAIGVGLA 272 (1095)
T ss_dssp TTTTCCSSSEEEEEEEESSCCBSCSS------------------------------CHHHHHHHHHHHCEEECCEEBSSG
T ss_pred ccccCCCCCCeEEEEEeCCCcCCCch------------------------------hHHHHHHHHHHCCCEEEEEecccc
Confidence 10 00 1112477778885541110 034567777778877666555543
Q ss_pred ---ccChhchhhhhccccc-eEEEeCCCCh
Q 004303 361 ---QVGVAELKVAVEKTGG-LVVLSDSFGH 386 (762)
Q Consensus 361 ---~~~l~~~~~L~~~TGG-~v~~~~~f~~ 386 (762)
.++..+|..+|..++| .++..++|+.
T Consensus 273 ~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 273 FQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp GGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred cccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 2588999999999887 6777777754
No 35
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=96.69 E-value=0.0024 Score=56.91 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=61.1
Q ss_pred hcccceecccCC--CCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHH
Q 004303 628 IQPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM 705 (762)
Q Consensus 628 iyP~L~~~~~~~--~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~ 705 (762)
-.|+||.+.... ....++++.++|.++.+||||+|..||+|+|+..+. .+..+ ....++.|.
T Consensus 11 ~~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~-----------~Ek~~-----A~~~a~~i~ 74 (114)
T 1svq_A 11 YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSP-----------QEKNK-----AAEVARAID 74 (114)
T ss_dssp CCEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCH-----------HHHHH-----HHHHHHHHH
T ss_pred CCcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCH-----------HHHHH-----HHHHHHHhh
Confidence 357899888532 246788999999999999999999999999998643 11111 122344554
Q ss_pred HcCCCCcEEEEEccCC--chhhhHHhh
Q 004303 706 KERFPVPRLVICDQHG--SQVGSYHNV 730 (762)
Q Consensus 706 ~~R~~~p~~~~~~~g~--sq~rf~~~l 730 (762)
.+|.....+.++++|. ....|...|
T Consensus 75 ~er~g~~~i~vv~eg~~~E~~~Fw~~L 101 (114)
T 1svq_A 75 AERKGLPKVEVFCETDSDIPAEFWKLL 101 (114)
T ss_dssp HHHTTCSEEEECCCCTTCCCHHHHHHH
T ss_pred hccCCCccEEEEeCCCcCCcHHHHHHc
Confidence 4565556788899987 445776665
No 36
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=95.81 E-value=0.0062 Score=65.26 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=38.6
Q ss_pred hcccceecccC-CC--Cccc--cccccccccCeEEEEeCCcEEEEEEcCchhH
Q 004303 628 IQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIAQ 675 (762)
Q Consensus 628 iyP~L~~~~~~-~~--p~~~--~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~ 675 (762)
..|+||.++.. |. .+.+ +++.+.|.++.+||||+|..||||+|+.++.
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~ 279 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQE 279 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCH
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCH
Confidence 67999998753 31 2233 6888999999999999999999999998753
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=95.42 E-value=1.7 Score=47.74 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=114.9
Q ss_pred CCcEEEEEEECCCChhH----HHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHH-
Q 004303 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ- 202 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~- 202 (762)
.|-=.+|++|+|.++.. ++.+...|.+.|..+..+.|+||.+|-+..-. |-.... .+.
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~----------P~~~~~-------p~~~ 172 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS----------PYMYIS-------PPEA 172 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSST----------TTSCCC-------SHHH
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccC----------ccccCC-------hhhh
Confidence 56678999999999866 45556666666777778999999998764410 100000 022
Q ss_pred HHHHhhcccCCCCCCCccccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH--
Q 004303 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-- 279 (762)
Q Consensus 203 l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~-- 279 (762)
+..+-.-. .+ .+ ..|+ -+...++.+....+.+.+.++.-. ...-.|+..+-+-+++|+
T Consensus 173 l~nPc~~~----~~------~c-----~p~f~fr~~l~LT~d~~~F~~~V~~~~iS----Gn~D~PEgg~dAl~qaavC~ 233 (472)
T 3t3p_B 173 LENPCYDM----KT------TC-----LPMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCD 233 (472)
T ss_dssp HHCTTTTT----TS------CC-----CCCCSEEEEEEEESCHHHHHHHHHHCCCC----CCSSSSBCHHHHHHHHHHCH
T ss_pred hcCCCccc----cc------CC-----CCCcceeEeeccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhcch
Confidence 33221000 00 00 0122 133567777777788888776542 123456667766667765
Q ss_pred HHhhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCccCCCCCCCCCCcccchhH----HHHHHHHHHHHhcCcEEE
Q 004303 280 SLLGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV----KFYDALSKQLVHQGHVLD 353 (762)
Q Consensus 280 ~ll~~~~~~~ggkIi~F~sg~p--t~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~----~fY~~la~~~~~~~isvD 353 (762)
.-+. .+...-|+++|++-.+ ..|.|++...-..+..+-|-+-. ..+..+. .-..+|+..+.+++|.+
T Consensus 234 ~~ig--WR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~----~~Y~~s~~~DYPSv~ql~~~l~e~nI~~- 306 (472)
T 3t3p_B 234 EKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSD----NHYSASTTMDYPSLGLMTEKLSQKNINL- 306 (472)
T ss_dssp HHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTT----CBBTTTTTSCCCCHHHHHHHHHHTTCEE-
T ss_pred hhcC--CCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCC----CcccccccCCCCCHHHHHHHHHhcCccE-
Confidence 3333 2345679999875555 47888887654344334443311 0111111 12456777777787654
Q ss_pred EEEecCCccChhchhhhhcc-ccceEEEe
Q 004303 354 LFACALDQVGVAELKVAVEK-TGGLVVLS 381 (762)
Q Consensus 354 lf~~~~~~~~l~~~~~L~~~-TGG~v~~~ 381 (762)
||+.......++ ..|+.. .|+.+-..
T Consensus 307 IFAVt~~~~~~Y--~~L~~~ip~s~vg~L 333 (472)
T 3t3p_B 307 IFAVTENVVNLY--QNYSELIPGTTVGVL 333 (472)
T ss_dssp EEEECGGGHHHH--HHHHHTSTTCEEEEC
T ss_pred EEEEeccchhHH--HHHHHhCCCceeeec
Confidence 777766555543 234433 34444443
No 38
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.39 E-value=0.53 Score=54.69 Aligned_cols=211 Identities=13% Similarity=0.145 Sum_probs=111.1
Q ss_pred CCcEEEEEEECCCChhH-HH---HHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEE-MS---FLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~---~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.|-=.+|++|+|.++.. ++ .+...|.+.|..+.++.|+||.+|-+..-. ... .. .| .++
T Consensus 110 ~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~-P~~-~~--~p-------------~~~ 172 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS-PYM-YI--SP-------------PEA 172 (690)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSST-TTS-CC--CS-------------TTT
T ss_pred CCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccC-Ccc-cc--Ch-------------hhh
Confidence 55668999999999876 44 444455555666778999999999875521 000 00 00 111
Q ss_pred -HHHhhcccCCCCCCCccccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH--
Q 004303 204 -LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-- 279 (762)
Q Consensus 204 -~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~-- 279 (762)
+. |-....+.+ ..|+ -+-..++.+....+.+.+..+.-. ...-.|+..+-+.+++|+
T Consensus 173 ~~~----------pc~~~~~~c-----~~~f~f~~~l~lt~~~~~f~~~v~~~~is----gn~D~PE~g~dAl~qa~~c~ 233 (690)
T 3fcs_B 173 LEN----------PCYDMKTTC-----LPMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCD 233 (690)
T ss_dssp TTC----------TTSSSSSCC-----CCCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCH
T ss_pred ccC----------CCcCCCCCC-----CCCccceeecccCCCHHHHHHHhhceecc----CCCCCCchHHHHHHHHhhcc
Confidence 11 100000000 0122 123456776666666666655431 122346666666666663
Q ss_pred HHhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCccCCCCCCCCCCcccchhHH--H--HHHHHHHHHhcCcEEE
Q 004303 280 SLLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK--F--YDALSKQLVHQGHVLD 353 (762)
Q Consensus 280 ~ll~~~~~~~ggkIi~F~sg~pt--~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~--f--Y~~la~~~~~~~isvD 353 (762)
.-+. .+...-|++||++-.+- .|.|++...-..+..+-|.+.+ .++..+.. | -.+|+.++.+++|.+
T Consensus 234 ~~ig--Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~----~~y~~s~~~DypSi~ql~~~l~~~~i~~- 306 (690)
T 3fcs_B 234 EKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSD----NHYSASTTMDYPSLGLMTEKLSQKNINL- 306 (690)
T ss_dssp HHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTT----CBBGGGGTSCCCCHHHHHHHHHHTTCEE-
T ss_pred cccC--CCCCceEEEEEECCCccccCCCccccceecCCCcceeecCC----CccccccccCCCCHHHHHHHHHHcCCeE-
Confidence 3333 23446799998765553 6888776553333333343311 11222222 1 467778888888844
Q ss_pred EEEecCCccChhchhhhh-ccccceEEEeCC
Q 004303 354 LFACALDQVGVAELKVAV-EKTGGLVVLSDS 383 (762)
Q Consensus 354 lf~~~~~~~~l~~~~~L~-~~TGG~v~~~~~ 383 (762)
||+......++++ .|+ ..+|+.+-....
T Consensus 307 ifavt~~~~~~y~--~l~~~i~~s~v~~l~~ 335 (690)
T 3fcs_B 307 IFAVTENVVNLYQ--NYSELIPGTTVGVLSM 335 (690)
T ss_dssp EEEEEGGGHHHHH--HHHHHSTTCEEEEECT
T ss_pred EEEEeCCchhhHH--HHHhhcCCceeeeecc
Confidence 6666655554432 344 335555555543
No 39
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.33 E-value=0.013 Score=63.78 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=38.4
Q ss_pred hcccceecccC-CC--Cccc-cccccccccCeEEEEeCCcEEEEEEcCchhH
Q 004303 628 IQPSLISYSFH-SG--PEPA-LLDVAAIAADRILLLDSYFTVVIFHGATIAQ 675 (762)
Q Consensus 628 iyP~L~~~~~~-~~--p~~~-~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~ 675 (762)
..|+||.++.. |. .+.+ +++.+.|.++.+||||+|..||||+|+.++.
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~ 332 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANE 332 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCH
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCH
Confidence 58999998763 31 1222 5888999999999999999999999998753
No 40
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.09 E-value=0.029 Score=60.12 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=53.0
Q ss_pred hcccceeccc-CCC--Cccc----cccccccccCeEEEEeCC--cEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCH
Q 004303 628 IQPSLISYSF-HSG--PEPA----LLDVAAIAADRILLLDSY--FTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPH 698 (762)
Q Consensus 628 iyP~L~~~~~-~~~--p~~~----~Ls~~~l~~~~iyLlD~g--~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~ 698 (762)
-.|+||.++. .|. ...+ +++.+.|.++.+||||+| ..||||+|+.++.. +. +..+
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~---------er---~~A~---- 309 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEK---------ER---QAAL---- 309 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHH---------HH---HHHH----
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHH---------HH---HHHH----
Confidence 4699999975 332 2344 899999999999999999 99999999987531 10 1111
Q ss_pred HHHHHHH--HcCCCCcEEEEEccCC
Q 004303 699 DDAGVIM--KERFPVPRLVICDQHG 721 (762)
Q Consensus 699 ~~~~~i~--~~R~~~p~~~~~~~g~ 721 (762)
..|++.+ ..|.+...+.++.+|.
T Consensus 310 ~~A~~y~~~~~rp~~~~i~~v~eG~ 334 (347)
T 1j72_A 310 QVAEGFISRMQYAPNTQVEILPQGR 334 (347)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEETTC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCC
Confidence 2333432 2455555677888885
No 41
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=94.76 E-value=0.012 Score=63.67 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=38.2
Q ss_pred hcccceecccC-CC--Cccc--cccccccccCeEEEEeCCcEEEEEEcCchhH
Q 004303 628 IQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIAQ 675 (762)
Q Consensus 628 iyP~L~~~~~~-~~--p~~~--~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~ 675 (762)
..|+||.++.. |. .+.+ +++.+.|.++.+||||+|..||||+|+.++.
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~ 320 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANE 320 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCH
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCH
Confidence 35899988763 32 2233 5888999999999999999999999998753
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=94.75 E-value=3.6 Score=45.37 Aligned_cols=208 Identities=13% Similarity=0.099 Sum_probs=113.7
Q ss_pred CCcEEEEEEECCCChhH----HHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.|-=.+|++|+|.++.. ++.+...|.+.|..+..+.|+||.+|-+..- +. .. . .+.+++
T Consensus 131 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v---~P-~~------~-------~~p~~l 193 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV---LP-FV------S-------TVPSKL 193 (503)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS---TT-TS------C-------CCHHHH
T ss_pred CceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc---CC-cc------c-------CCHHHh
Confidence 56678999999999866 5555566666677777899999999865441 11 00 0 012333
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH--H
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~--~ 280 (762)
..+-.-.. ..+ ..|+ -+-+.++.+....+.+.+....-. .+.-.|+..+.+-+++|+ .
T Consensus 194 ~~PC~~~~----------~~c-----~p~f~fr~~l~LT~d~~~F~~~V~~~~iS----GnlD~PEggfDAlmQaavC~~ 254 (503)
T 3v4v_B 194 RHPCPTRL----------ERC-----QSPFSFHHVLSLTGDAQAFEREVGRQSVS----GNLDSPEGGFDAILQAALCQE 254 (503)
T ss_dssp HCCSSCSS----------SCC-----CCCCSEEEEEEEESCSHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred cCCCcCCC----------CCC-----CCCcceEEEEEecCCHHHHHHHHhhcCcc----CCCCCCchHHHHHHHHhhccc
Confidence 32210000 000 0122 122456766555666666554431 122346667766667775 3
Q ss_pred HhhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCccCCCCCCCCCCcccchhHH----HHHHHHHHHHhcCcEEEE
Q 004303 281 LLGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLDL 354 (762)
Q Consensus 281 ll~~~~~~~ggkIi~F~sg~p--t~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~----fY~~la~~~~~~~isvDl 354 (762)
-+. .++ ..|+++|++-.+ ..|.|++...-..+..+-|-+.+ ..+..+.. -..+|+.++.+++|. =|
T Consensus 255 ~Ig--WR~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~----~~Yt~s~~~DYPSv~ql~~kL~ennI~-~I 326 (503)
T 3v4v_B 255 QIG--WRN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSN----GLYSRSTEFDYPSVGQVAQALSAANIQ-PI 326 (503)
T ss_dssp HHT--CCS-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTT----SBBGGGGGSCCCCHHHHHHHHHHHTEE-EE
T ss_pred ccC--CCc-ceEEEEEECCCCcCcCCCccccceecCCCCCeEECCC----CccccccccCCCCHHHHHHHHHhcCCe-EE
Confidence 343 233 679999975544 47888886654444444453311 12222221 245677777778874 37
Q ss_pred EEecCCccChhchhhhhcc-ccceEEEe
Q 004303 355 FACALDQVGVAELKVAVEK-TGGLVVLS 381 (762)
Q Consensus 355 f~~~~~~~~l~~~~~L~~~-TGG~v~~~ 381 (762)
|+......++++ .|+.. .|+.+-..
T Consensus 327 FAVt~~~~~~Y~--~L~~~ip~s~vg~L 352 (503)
T 3v4v_B 327 FAVTSAALPVYQ--ELSKLIPKSAVGEL 352 (503)
T ss_dssp EEECSSSHHHHH--HHHTTSTTCEEEEC
T ss_pred EEEcccchhHHH--HHHHhCCCceeeEc
Confidence 887776655443 44443 34444443
No 43
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.68 E-value=0.72 Score=53.08 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=46.7
Q ss_pred CcchhhHHHHHHHHHhhccCCCC-CcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHH
Q 004303 267 STRCTGTALSIAASLLGACVPGS-GARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQL 345 (762)
Q Consensus 267 ~~~~~G~Al~~A~~ll~~~~~~~-ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~ 345 (762)
...++|.||.+|..+++...... .=+|++||+|--+.|. + .....-....|+.+
T Consensus 139 ~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--------------------~-----~~~~~~~~~~a~~l 193 (609)
T 1jey_A 139 SDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--------------------D-----SAKASRARTKAGDL 193 (609)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--------------------C-----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--------------------c-----hHHHHHHHHHHHHH
Confidence 35789999999999998532221 4588888987433321 0 01112246789999
Q ss_pred HhcCcEEEEEEecCC
Q 004303 346 VHQGHVLDLFACALD 360 (762)
Q Consensus 346 ~~~~isvDlf~~~~~ 360 (762)
...||.|.+|.++.+
T Consensus 194 ~~~gI~i~~igig~~ 208 (609)
T 1jey_A 194 RDTGIFLDLMHLKKP 208 (609)
T ss_dssp HHHTEEEEEEEBCCT
T ss_pred HhcCcEEEEEecCCC
Confidence 999999999987654
No 44
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=94.67 E-value=0.13 Score=61.81 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=38.4
Q ss_pred CCcEEEEEEECCCChh--------HHHHHHHHHHHHhhcCC--CCcEEEEEEeCCeEE
Q 004303 128 VPPVFMFVVDTCIIEE--------EMSFLKSALSQAIDLLP--DNSLVGLITFGTLVQ 175 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~--------~l~~~~~~l~~~l~~lp--~~~~VglITfd~~V~ 175 (762)
.+.-.+||||+|.++. +++.++++++..++.|. ++.+||||+|++.+.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 5667999999999863 36678888888887664 478999999998663
No 45
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=94.01 E-value=4.3 Score=44.28 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=109.7
Q ss_pred CCcEEEEEEECCCChhH----HHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.|-=.+|++|+|.++.+ ++.+...|.+.|..+..+.|+||..|-+..-. |-.... .+.+
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~----------P~~~t~-------p~~~ 183 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVM----------PYISTT-------PAKL 183 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSST----------TTSCCS-------TTTT
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccC----------CcccCC-------hHHh
Confidence 55668999999999866 55666666667777778999999998654311 100000 0111
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHH--
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-- 280 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~-- 280 (762)
. +|-... ..+ ..|+ -+-..++.+....+.+.+..+.-. .+.-.|+..+-+-+++|+-
T Consensus 184 ~----------nPC~~~-~~c-----~~~f~fr~~l~LT~d~~~F~~~V~~~~is----Gn~D~PEgg~DAl~Qaavc~~ 243 (454)
T 3vi3_B 184 R----------NPCTSE-QNC-----TTPFSYKNVLSLTNKGEVFNELVGKQRIS----GNLDSPEGGFDAIMQVAVCGS 243 (454)
T ss_dssp T----------CCSCSS-SCC-----CCCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred c----------CCCcCc-cCC-----CCCcceeeeeecCCCHHHHHHHHhhcccc----CCCcCCchhHHHHHHHhcccc
Confidence 1 110000 000 0122 123567777666777777665432 1223566677666777753
Q ss_pred HhhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCccCCCCCCCCCCcccchhH----HHHHHHHHHHHhcCcEEEE
Q 004303 281 LLGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV----KFYDALSKQLVHQGHVLDL 354 (762)
Q Consensus 281 ll~~~~~~~ggkIi~F~sg~p--t~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~----~fY~~la~~~~~~~isvDl 354 (762)
-++ .++ .-|+++|++-.+ ..|.|++...-..+..+-|-+ +. .+..+. .-..+|+.++.+++|-+ |
T Consensus 244 ~ig--WR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~--~~---~Yt~s~~~DYPSv~ql~~~l~e~nI~~-I 314 (454)
T 3vi3_B 244 LIG--WRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE--NN---MYTMSHYYDYPSIAHLVQKLSENNIQT-I 314 (454)
T ss_dssp HHT--CCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE--TT---EECCTTTSCCCCHHHHHHHHHHTTEEE-E
T ss_pred ccC--Ccc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC--CC---cccccccCCCCCHHHHHHHHHhcCCcE-E
Confidence 233 244 789999975554 479999876654444455543 11 111111 12567888888887765 7
Q ss_pred EEecCCccChh
Q 004303 355 FACALDQVGVA 365 (762)
Q Consensus 355 f~~~~~~~~l~ 365 (762)
|+.......++
T Consensus 315 FAVt~~~~~~Y 325 (454)
T 3vi3_B 315 FAVTEEFQPVY 325 (454)
T ss_dssp EEEEGGGHHHH
T ss_pred EEEcCccchHH
Confidence 87777665554
No 46
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=93.93 E-value=0.091 Score=56.18 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=62.6
Q ss_pred cccceecccCC--CCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHH-
Q 004303 629 QPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM- 705 (762)
Q Consensus 629 yP~L~~~~~~~--~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~- 705 (762)
.|+||.+.... ...+++++.++|.++.+||||+|..||+|+|+..+. .+.. .....++.|.
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~-----------~Er~-----~A~~~a~~i~~ 198 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNI-----------LERN-----KARDLALAIRD 198 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCH-----------HHHH-----HHHHHHHHHHT
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCH-----------HHHH-----HHHHHHHHHHh
Confidence 47888887533 235788999999999999999999999999998642 1111 1123455665
Q ss_pred HcCCCCcEEEEEccCCchhhhHHhh
Q 004303 706 KERFPVPRLVICDQHGSQVGSYHNV 730 (762)
Q Consensus 706 ~~R~~~p~~~~~~~g~sq~rf~~~l 730 (762)
..|...+.++++++|.....|...|
T Consensus 199 ~~~~g~~~v~~v~EG~E~~~Fw~~L 223 (347)
T 1j72_A 199 SERQGKAQVEIVTDGEEPAEMIQVL 223 (347)
T ss_dssp TSCCSSCEEEEEETTCCCHHHHHHH
T ss_pred hccCCCceEEEEeCCCCHHHHHHHh
Confidence 3466777899999997666788877
No 47
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=93.62 E-value=0.061 Score=63.35 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=39.9
Q ss_pred HhhcccceecccC-CC--Cccc--cccccccccCeEEEEeCCcEEEEEEcCchhH
Q 004303 626 VMIQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIAQ 675 (762)
Q Consensus 626 ~~iyP~L~~~~~~-~~--p~~~--~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~ 675 (762)
....|+||.++.. |. ...+ +++.+.|.++.+||||+|..||||+|+.++.
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~ 664 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQD 664 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCH
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCH
Confidence 4578999999853 32 1222 5888899999999999999999999998754
No 48
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=92.71 E-value=0.11 Score=52.01 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=38.9
Q ss_pred CCcEEEEEEECCCChhH-HHHHHHHHHHHhhcCC---CCcEEEEEEeCCe
Q 004303 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDLLP---DNSLVGLITFGTL 173 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~lp---~~~~VglITfd~~ 173 (762)
.|.-++|+||+|.+... ++.++++++..+..++ +..+||+|+|++.
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 45678999999998755 9999999999988765 4689999999854
No 49
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=91.75 E-value=0.36 Score=56.77 Aligned_cols=87 Identities=8% Similarity=0.085 Sum_probs=63.5
Q ss_pred hcccceecccCC--CCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHH
Q 004303 628 IQPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM 705 (762)
Q Consensus 628 iyP~L~~~~~~~--~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~ 705 (762)
-.|+||.+.... ....|+++.++|.++.+||||+|..||+|.|+..+. .+..+ ....++.|+
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~-----------~Er~k-----A~~~a~~i~ 195 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNR-----------FERLK-----ATQVSKGIR 195 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCH-----------HHHHH-----HHHHHHHHH
T ss_pred CCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCH-----------HHHHH-----HHHHHHHHh
Confidence 357888887532 246788999999999999999999999999997632 22111 123455666
Q ss_pred H-cCCCCcEEEEEccCCchhhhHHhh
Q 004303 706 K-ERFPVPRLVICDQHGSQVGSYHNV 730 (762)
Q Consensus 706 ~-~R~~~p~~~~~~~g~sq~rf~~~l 730 (762)
. +|.....++++++|.....|...|
T Consensus 196 ~~er~g~~~i~~v~Eg~e~~eFw~~L 221 (729)
T 1d0n_A 196 DNERSGRAQVSVFEEGAEPEAMLQVL 221 (729)
T ss_dssp HHSGGGCSEEEEEETTCCCHHHHHHH
T ss_pred hhhcCCCccEEEecCCCChHHHHHHc
Confidence 3 566667888999997666888777
No 50
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=89.25 E-value=10 Score=37.05 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=32.6
Q ss_pred CcEEEEEEECCCChhH-HHHHHHHHH---HHhhcCCCCcEEEEEEeCCe
Q 004303 129 PPVFMFVVDTCIIEEE-MSFLKSALS---QAIDLLPDNSLVGLITFGTL 173 (762)
Q Consensus 129 ~p~~vFvID~s~~~~~-l~~~~~~l~---~~l~~lp~~~~VglITfd~~ 173 (762)
|-=.+|++|+|.++.. ++.+++.+. +.|+.+.++.|+||.+|-+.
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 4457999999999866 555554444 44555667899999998655
No 51
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=88.08 E-value=0.92 Score=51.37 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=24.1
Q ss_pred cchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCC
Q 004303 268 TRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEG 304 (762)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~G 304 (762)
.+.+|.||..|...- .....|+++++|..+.|
T Consensus 444 gT~i~~aL~~a~~~~-----~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 444 STDCALPMLWAQKTN-----TAADIFIVFTDCETNVE 475 (538)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEECCCCCSS
T ss_pred CCcHHHHHHHHHhcc-----CCCCEEEEEcCCCCCCC
Confidence 567888999887752 35588999999976654
No 52
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=86.63 E-value=0.55 Score=49.97 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=38.4
Q ss_pred cccceecccCC----CCccccccccccccCeEEEEeCCcEEEEEEcCchh
Q 004303 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (762)
Q Consensus 629 yP~L~~~~~~~----~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~ 674 (762)
-|+||.+..+. ...+++++.++|.++.+||||+|..||+|+|+..+
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~ 173 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGAS 173 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCC
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCC
Confidence 57899988532 13467889999999999999999999999999864
No 53
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=84.90 E-value=2.2 Score=49.42 Aligned_cols=208 Identities=14% Similarity=0.138 Sum_probs=109.4
Q ss_pred CCcEEEEEEECCCChhH----HHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHH
Q 004303 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l 203 (762)
.|.=.+|++|+|.++.. ++.+...|.+.|..+.++.|+||.+|-+..-. ... .. .| +.+
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~-P~~-~~--~p-------------~~~ 165 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVL-PFV-NT--HP-------------DKL 165 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSST-TSS-CC--SS-------------TTT
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccC-Ccc-cc--Cc-------------hhc
Confidence 56778999999999876 44555566667777888999999999865421 111 00 00 111
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHH--H
Q 004303 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (762)
Q Consensus 204 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~--~ 280 (762)
.. |-......+ ..|+ -+...++.+....+.+.+..+.-. ...-.|+..+-+.++||+ .
T Consensus 166 ~~----------Pc~~~~~~c-----~~~f~f~~~l~lt~~~~~F~~~v~~~~is----gn~D~PE~g~dAl~qa~vc~~ 226 (687)
T 3k6s_B 166 RN----------PCPNKEKEC-----QPPFAFRHVLKLTNNSNQFQTEVGKQLIS----GNLDAPEGGLDAMMQVAACPE 226 (687)
T ss_dssp TC----------CCCSCCCCC-----CCCCSCEEEEEEESCSHHHHHHHHTSCCC----CCSSSSCCHHHHHHHHTTCHH
T ss_pred cC----------CCCCCCCCc-----CCcccceeecccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhhccc
Confidence 11 100000000 0122 122456666555667677665432 122346666666666663 3
Q ss_pred HhhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCccCCCCCCCCCCcccchhHH----HHHHHHHHHHhcCcEEEE
Q 004303 281 LLGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLDL 354 (762)
Q Consensus 281 ll~~~~~~~ggkIi~F~sg~p--t~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~----fY~~la~~~~~~~isvDl 354 (762)
-+. .+. .-|++||++-.+ ..|.|+|...-..+..+-|.+ . ..+..+.. --.+|+.++.+++|.+ |
T Consensus 227 ~ig--Wr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~---~~y~~s~~~DyPS~~ql~~~l~~~~I~~-i 297 (687)
T 3k6s_B 227 EIG--WRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--D---NLYKRSNEFDYPSVGQLAHKLAENNIQP-I 297 (687)
T ss_dssp HHC--CCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--S---SBCSSGGGSCCCCGGGHHHHHHHTTCBC-C
T ss_pred ccC--Ccc-ceEEEEEECCCccccCCCccccceecCCCCccccC--C---CccccccccCCCCHHHHHHHHHHcCCeE-E
Confidence 443 234 789999876555 368887765533333333432 1 11111111 1245677777778844 5
Q ss_pred EEecCCccChhchhhhhc-cccceEEEeC
Q 004303 355 FACALDQVGVAELKVAVE-KTGGLVVLSD 382 (762)
Q Consensus 355 f~~~~~~~~l~~~~~L~~-~TGG~v~~~~ 382 (762)
|+.....++++ ..|+. .+|+.+-...
T Consensus 298 favt~~~~~~y--~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 298 FAVTSRMVKTY--EKLTEIIPKSAVGELS 324 (687)
T ss_dssp EEECGGGHHHH--HHHHHHSSSCCEEECC
T ss_pred EEEeccchhhH--HHHHhhcCCceeeeec
Confidence 66555544443 34443 3455555544
No 54
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=84.14 E-value=0.38 Score=38.36 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=17.7
Q ss_pred CceEEecCCCCCCCCCcCCC
Q 004303 78 AKIWICPFCFQRNHFPPHYA 97 (762)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (762)
.-.|+|++|...|.+|.+|.
T Consensus 15 ~~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFT 34 (76)
T ss_dssp CEEEECTTTCCEEEESSCCC
T ss_pred ccceECccccccCcCccccC
Confidence 45799999999999998884
No 55
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=79.33 E-value=1.2 Score=47.87 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=38.6
Q ss_pred cccceecccCC----CCccccccccccccCeEEEEeCC-cEEEEEEcCchh
Q 004303 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSY-FTVVIFHGATIA 674 (762)
Q Consensus 629 yP~L~~~~~~~----~p~~~~Ls~~~l~~~~iyLlD~g-~~i~i~~G~~v~ 674 (762)
-|+||.+...+ ....|+++.++|.++.+||||+| ..||+|.|+..+
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss 215 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGAS 215 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCC
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCC
Confidence 57899997542 13567899999999999999999 999999999864
No 56
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=74.05 E-value=0.67 Score=35.01 Aligned_cols=29 Identities=17% Similarity=0.603 Sum_probs=21.3
Q ss_pred CCcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
..--|.+|++++.- ..+.-.|+||+|.+.
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhhc
Confidence 45668999998765 335678999999643
No 57
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.58 E-value=1.3 Score=38.00 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=26.8
Q ss_pred CCcccCCCCceecCcceEEcCCceEEecCCCCCCCCCcCC
Q 004303 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHY 96 (762)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p~~y 96 (762)
.|.+|.+|+--+ .+.-++.-+|+.|++.|-.++.|
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCcce
Confidence 589999999764 23334668999999999877665
No 58
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=68.53 E-value=1.7 Score=34.73 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCCcccCCCCceecCcceEEcCCceEEecCCCCCCCC
Q 004303 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (762)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 92 (762)
|-++||. |+++ .-.+.+.+.-.|+ ||+.-.+
T Consensus 2 Y~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 2 YIIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEEET-TSCC----EEEETTCSEEEET-TTEEEEC
T ss_pred eEEEECC-CCCE----EEEcCCCcEEECC-CCCeeee
Confidence 3478999 9996 5566677778899 9988765
No 59
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=61.27 E-value=14 Score=41.55 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=22.2
Q ss_pred cchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCC
Q 004303 268 TRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEG 304 (762)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~G 304 (762)
.+.++.||..|.... .....|+++++|--+.|
T Consensus 440 gTdi~~~l~~a~~~~-----~~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQER-----LDVDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhc-----CCCCEEEEEeCCCccCC
Confidence 456777887775543 34688999999866554
No 60
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=61.03 E-value=3.3 Score=32.50 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.7
Q ss_pred CCCcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
..+..|.+|++--.|..+-...|. ..||-|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 357899999999999999998877 999999843
No 61
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=59.89 E-value=8.5 Score=28.11 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.2
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
...|..|++ .-..++...+.++|.-||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 23567877788999999985
No 62
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=58.02 E-value=2.1 Score=46.33 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=0.0
Q ss_pred cccceecccCC----CCccccccccccccCeEEEEeCCcEEEEEEcCchh
Q 004303 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (762)
Q Consensus 629 yP~L~~~~~~~----~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~ 674 (762)
.|+||.+.... .-.+|+++.++|.++.+||||+|..||+|.|+..+
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss 227 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCS 227 (398)
T ss_dssp --------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCC
Confidence 46788776432 23478899999999999999999999999999875
No 63
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=57.78 E-value=22 Score=35.40 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=35.9
Q ss_pred HHHHHHHhcCcEEEEEEecC-C---ccChhchhhhhccccceEEEeCC
Q 004303 340 ALSKQLVHQGHVLDLFACAL-D---QVGVAELKVAVEKTGGLVVLSDS 383 (762)
Q Consensus 340 ~la~~~~~~~isvDlf~~~~-~---~~~l~~~~~L~~~TGG~v~~~~~ 383 (762)
+.|+.|.+.||.|..+.+.. + .-|..+|..+|..|||.-+....
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 46788889999999998843 3 44578999999999999999744
No 64
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=56.92 E-value=5.7 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=22.7
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH 91 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~ 91 (762)
.-.|..|++- ..++.+.+.|.|..|++...
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 4579999983 34555568999999998754
No 65
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=49.48 E-value=3.9 Score=29.13 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=25.7
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
|..|.+|++--.|..+-...|. -.||-||-.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 4679999999999999888776 889999843
No 66
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=49.26 E-value=3.5 Score=29.87 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=16.5
Q ss_pred cccCCCCceecCc----ceEEcCCceEEecCCCCC
Q 004303 59 LRCRTCRSILNPF----SIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 59 ~RC~~C~ayiNp~----~~~~~~~~~w~C~~C~~~ 89 (762)
-+|..|+-...|- ..|.+--..|+|+.|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 4677776544432 222222334777777754
No 67
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=45.97 E-value=4 Score=33.83 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCcccCCCCceecCc-----------ceEEcCCceEEecCCCCC
Q 004303 57 APLRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 57 ~p~RC~~C~ayiNp~-----------~~~~~~~~~w~C~~C~~~ 89 (762)
..-+|..|+-...|- ..|++--..|+|+.|+..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 457788888655542 333443456888888864
No 68
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.14 E-value=5.4 Score=29.67 Aligned_cols=11 Identities=36% Similarity=1.220 Sum_probs=6.7
Q ss_pred ceEEecCCCCC
Q 004303 79 KIWICPFCFQR 89 (762)
Q Consensus 79 ~~w~C~~C~~~ 89 (762)
..|+|+.|+..
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 45677777653
No 69
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.56 E-value=8.9 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=22.5
Q ss_pred cccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 59 ~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
..|..|+-=+---|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4566666666667777665678999999754
No 70
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=39.20 E-value=18 Score=27.71 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=24.4
Q ss_pred CCCcccCCCCceecCcceEEcCCceEEecCCCCCCCC--CcCCCCCC
Q 004303 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF--PPHYASIT 100 (762)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~--p~~y~~~~ 100 (762)
..+.+|.+|+.|-= .=+|+.||..... |..|++-|
T Consensus 4 s~mr~C~~CgvYTL----------k~~CP~CG~~T~~~hParfSp~D 40 (60)
T 2apo_B 4 MRMKKCPKCGLYTL----------KEICPKCGEKTVIPKPPKFSLED 40 (60)
T ss_dssp CCCEECTTTCCEES----------SSBCSSSCSBCBCCCCCCCCTTC
T ss_pred hhceeCCCCCCEec----------cccCcCCCCcCCCCCCCCCCCCc
Confidence 34688999999832 3469999987654 55665433
No 71
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=39.07 E-value=5 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.3
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
...|.+|++--.|..+-...|. ..||-||..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 4679999999999988888776 889999854
No 72
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.97 E-value=6.5 Score=29.23 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=4.5
Q ss_pred eEEecCCCC
Q 004303 80 IWICPFCFQ 88 (762)
Q Consensus 80 ~w~C~~C~~ 88 (762)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (52)
T 1e8j_A 36 DWACPVCGA 44 (52)
T ss_dssp TCCCSSSCC
T ss_pred CCcCCCCCC
Confidence 355555554
No 73
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.50 E-value=11 Score=27.87 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCcccCCCCceecCcceEEcCCceEEecCCCCCCCCC
Q 004303 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (762)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p 93 (762)
..-.|.+|++- .+.+.|.|-=||+.|--|
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCCEE
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccccc
Confidence 45679999996 235789999999986433
No 74
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.79 E-value=7.8 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=17.7
Q ss_pred CcccCCCCceecCc-----------ceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~ayiNp~-----------~~~~~~~~~w~C~~C~~~ 89 (762)
.-+|..|+=...|- ..|.+--..|+|+.|+..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 35677777554432 223333345778888764
No 75
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.70 E-value=7.7 Score=29.08 Aligned_cols=30 Identities=27% Similarity=0.687 Sum_probs=15.7
Q ss_pred ccCCCCceecCc-----------ceEEcCCceEEecCCCCC
Q 004303 60 RCRTCRSILNPF-----------SIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 60 RC~~C~ayiNp~-----------~~~~~~~~~w~C~~C~~~ 89 (762)
+|..|+-..+|- ..|.+--..|+|+.|+..
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 566666544432 223333345777777754
No 76
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.01 E-value=12 Score=36.41 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=18.5
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRN 90 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N 90 (762)
.-+|..|+-.... ..-|+|++|+..-
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRPK 196 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCBG
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCCh
Confidence 4689999866443 2349999999753
No 77
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=35.15 E-value=13 Score=32.92 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=26.1
Q ss_pred cccCCCCceecCc----ceEEcCC---ceEEecCCCCCCCCC
Q 004303 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (762)
Q Consensus 59 ~RC~~C~ayiNp~----~~~~~~~---~~w~C~~C~~~N~~p 93 (762)
.-|.+|++++=|- +.+..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 4699999998775 3344332 477899999988776
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=34.92 E-value=7.7 Score=29.19 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=5.6
Q ss_pred ceEEecCCCC
Q 004303 79 KIWICPFCFQ 88 (762)
Q Consensus 79 ~~w~C~~C~~ 88 (762)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cga 44 (55)
T 2v3b_B 35 ADWVCPDCGV 44 (55)
T ss_dssp TTCCCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3466666654
No 79
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.76 E-value=19 Score=26.42 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=18.8
Q ss_pred CcccCCCCc--eecCcceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRS--ILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~a--yiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
--.|.+|++ ++-+ ...+|.|.=|+..
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 456899998 4332 2478999999864
No 80
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.25 E-value=7.8 Score=31.62 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=17.1
Q ss_pred CCcccCCCCceecCc-----------ceEEcCCceEEecCCCCC
Q 004303 57 APLRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 57 ~p~RC~~C~ayiNp~-----------~~~~~~~~~w~C~~C~~~ 89 (762)
..-+|..|+=...|- ..|++--..|+|+.|+..
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 346677776554431 122222345777777753
No 81
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=33.60 E-value=16 Score=22.10 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=21.1
Q ss_pred ccCCCCceecCcceEEcCCceEEecCC
Q 004303 60 RCRTCRSILNPFSIVDFAAKIWICPFC 86 (762)
Q Consensus 60 RC~~C~ayiNp~~~~~~~~~~w~C~~C 86 (762)
.|-.|-.+=|-||.-+ -|+.|-|.=|
T Consensus 2 ~cvscv~fgngfcgdn-cgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDN-CGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECS-SSCEEECSCC
T ss_pred cceEeEeecCccccCC-cCCcccccCC
Confidence 4888999999998644 5789999876
No 82
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=27.99 E-value=12 Score=41.88 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=0.0
Q ss_pred CceEEecCCCCCCCCCcCCC
Q 004303 78 AKIWICPFCFQRNHFPPHYA 97 (762)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (762)
...|+|++|+..|++|..|.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 46799999999999998774
No 83
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=27.15 E-value=13 Score=32.45 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.0
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 88 (762)
+..|.+|++.--|..+-+..| .+.||-|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 467999999999999998876 599999984
No 84
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.12 E-value=11 Score=34.76 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=19.6
Q ss_pred cccCCCCceecCcceE-EcCCceEEecCCCCCCC
Q 004303 59 LRCRTCRSILNPFSIV-DFAAKIWICPFCFQRNH 91 (762)
Q Consensus 59 ~RC~~C~ayiNp~~~~-~~~~~~w~C~~C~~~N~ 91 (762)
..|..|+-.+.--|.+ ......|.|.+|...-.
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 3455555555444442 23457899999986543
No 85
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.88 E-value=20 Score=31.36 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=20.5
Q ss_pred CcccCCCCceecCcceEEcCCceE-EecCCCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIW-ICPFCFQRNH 91 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w-~C~~C~~~N~ 91 (762)
-.||.+|+..... ..... .||-|++.+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 4789999887655 23456 8999998864
No 86
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.30 E-value=21 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.685 Sum_probs=21.5
Q ss_pred cccCCCCceecCcceEEc----CCceEEecCCCCCCC
Q 004303 59 LRCRTCRSILNPFSIVDF----AAKIWICPFCFQRNH 91 (762)
Q Consensus 59 ~RC~~C~ayiNp~~~~~~----~~~~w~C~~C~~~N~ 91 (762)
..|..|+-.+..-|.... ....|.|++|...-+
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 456666666666555543 235899999987644
No 87
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.39 E-value=77 Score=25.23 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCcccCCCCceecCcceEEcCCceE-----EecCCCCC
Q 004303 56 YAPLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (762)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~~~~w-----~C~~C~~~ 89 (762)
....+|..|+-.|-+--.+...++.| +|.-|+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 51 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVI 51 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCC
Confidence 35689999999886433344456777 89999864
No 88
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=25.03 E-value=20 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=11.6
Q ss_pred ceEEecCCCCCCCC
Q 004303 79 KIWICPFCFQRNHF 92 (762)
Q Consensus 79 ~~w~C~~C~~~N~~ 92 (762)
+-|.|+-|+..|.-
T Consensus 4 gDW~C~~C~~~Nfa 17 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR 17 (32)
T ss_dssp SEEECTTTCCEEET
T ss_pred CCCCcCcCcCCcCh
Confidence 46999999999853
No 89
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=24.33 E-value=21 Score=31.65 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=26.1
Q ss_pred cccCCCCceecCc----ceEEcCC---ceEEecCCCCCCCCC
Q 004303 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (762)
Q Consensus 59 ~RC~~C~ayiNp~----~~~~~~~---~~w~C~~C~~~N~~p 93 (762)
.-|++|++++=|- +.+..++ -.++|..||+...+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 4699999998775 3444432 467899999988776
No 90
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=22.78 E-value=10 Score=29.32 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.3
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
+..|.+|++--.|..+-...|. -.||-||-.
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~ 37 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLY 37 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCC-chhhHHHHH
Confidence 5679999999999998888777 789999843
No 91
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=22.50 E-value=51 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.3
Q ss_pred CcccCCCCceecCcceEEcCCceEEecCCCCC
Q 004303 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (762)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (762)
..+|..|+.- + ..++...+-++|.-||..
T Consensus 11 ~~~Cp~C~~~--~-lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDA--I-LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSS--C-CEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCC--c-eeEeCCCCeEEeCCCCCE
Confidence 4589999872 2 456767778999999976
No 92
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=21.75 E-value=29 Score=22.42 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=12.9
Q ss_pred CceEEecCCCCCCCCC
Q 004303 78 AKIWICPFCFQRNHFP 93 (762)
Q Consensus 78 ~~~w~C~~C~~~N~~p 93 (762)
+..|.|+.|...|.-.
T Consensus 4 ~~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPG 19 (31)
T ss_dssp SCCEECSSSCCEECSS
T ss_pred CccccCCcccccCCCC
Confidence 4579999999999754
No 93
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=20.95 E-value=77 Score=27.71 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHhhcCCC---CcEEEEEEeCCeEE
Q 004303 142 EEEMSFLKSALSQAIDLLPD---NSLVGLITFGTLVQ 175 (762)
Q Consensus 142 ~~~l~~~~~~l~~~l~~lp~---~~~VglITfd~~V~ 175 (762)
..-.+.++++|+.-+..-|. +.+|-+++||+.|-
T Consensus 109 ~~fAe~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 109 HIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 33457788999888877664 67999999998763
No 94
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.22 E-value=24 Score=29.08 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.8
Q ss_pred ceEEecCCCCCCCCC
Q 004303 79 KIWICPFCFQRNHFP 93 (762)
Q Consensus 79 ~~w~C~~C~~~N~~p 93 (762)
..|.|+||++.+.+.
T Consensus 22 t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 22 TQFTCPFCNHEKSCD 36 (85)
T ss_dssp SCCCCTTTCCSSCEE
T ss_pred CeEcCCCCCCCCeEE
Confidence 679999999998763
Done!