BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004304
(762 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
SV=1
Length = 1282
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 258/546 (47%), Positives = 340/546 (62%), Gaps = 55/546 (10%)
Query: 189 DCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYE 248
DCS+ E W EEV SIRD FVTG W +K +ED++ +YGD+E
Sbjct: 733 DCSRF-LVEAPHDWDLEEVMNSIRDCFVTGKWE---DDKDAAKVLAEDEE----LYGDFE 784
Query: 249 DLETGEKQEGQRKDNSGCEGIE---------NEDESAVEERRLKKLSLRAKFDVQYDGSE 299
DLETG+ +G+ N+ E IE +E+ESA ++ KK L+ FD +YD E
Sbjct: 785 DLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGE 844
Query: 300 SPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTG 359
S D +K E++ + Q+N AE D D+ R++ EGFR G
Sbjct: 845 S---------------------TYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPG 883
Query: 360 TYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPI 419
Y+R+EI +VP E V+ FDP +P+++GG+G E NVGY+Q+RLK+HRW+ KK+LKSRDPI
Sbjct: 884 MYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPI 942
Query: 420 IVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNN 479
I S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FWGP+ P TG +A+Q++S
Sbjct: 943 IFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGI 1002
Query: 480 QASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVR 539
FRIAAT VVL+ + +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG +R
Sbjct: 1003 MPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIR 1062
Query: 540 TVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRF 599
TVSGIRGQ+KKA + EG R +FED++LMSDIVFMR W V IP F
Sbjct: 1063 TVSGIRGQIKKALRAP-------------EGAFRASFEDKLLMSDIVFMRTWYPVSIPAF 1109
Query: 600 YNPLTTALQPRDK--IWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKS 657
YNP+T+ L+P + W GM+T +LR H + + NK+SLYKPI R + FN L IPK+
Sbjct: 1110 YNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKA 1169
Query: 658 LQAALPFESKPK-DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQ 716
LQ ALPF++KPK K P R AV+ EPHERK+ L L + ++KMKK K ++
Sbjct: 1170 LQKALPFKNKPKTQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQR 1229
Query: 717 QHRKKE 722
KE
Sbjct: 1230 HLHNKE 1235
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 264/715 (36%), Positives = 395/715 (55%), Gaps = 58/715 (8%)
Query: 59 SYEEGDDDDSDEGEDDDDDGDEGEDDDDDGDEGEDENNHNVDNHLSSGTEEREDNDDMEN 118
++++ D + +DE ED D G G +++D + E+ + D+ L G + ED++
Sbjct: 434 AFDDSDVNSADENEDVDFTGKIGAINNEDESDNEEVAFADSDSDLG-GQFDDEDSNLRWK 492
Query: 119 ELKLTKSSL------RRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESD------EDEF 166
E +K++L +R N+ ++ Y +S S + ++ +S + ESD E++F
Sbjct: 493 EGLASKAALAYSQSGKRRRNIQKIFYDESLSPKDAYAEYKGESAKSSESDLVVSDDEEDF 552
Query: 167 FKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQR 226
FK N E + S N + + +S K W+ ++ ++ RF+TG + +
Sbjct: 553 FKVSKVAN---ESISS---NHEKLMESESDRLSKKWENPQLLAQLKSRFITGSLLDSIE- 605
Query: 227 NQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLS 286
+++ S D GD+EDLE E + S + E+E + +E
Sbjct: 606 -------GQEEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVTAENEESADE------- 651
Query: 287 LRAKFDVQYDGSESPEEEMNEKDGAKFH-CGQP--NEIGLVDQMKEEIEFRKQMNIAELN 343
D Q + E+ ++ + + G P ++ + KE+I + +N
Sbjct: 652 ----VDFQTEREENARKKEELRLRFEEEDRGDPEKKDVDWYTEEKEKIARQLVINREAFE 707
Query: 344 DLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLK 403
D+D +R E+EG+R GTY+R+ I+DVPFE VE+FD +PV+VGG+ EQ G +QVR+K
Sbjct: 708 DMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYGLVQVRIK 767
Query: 404 RHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPL 463
RHRW HKK+LK+ DP+I S+GWRRFQ+IPVY+I D R+RMLKYTPEHMHC TF+GP
Sbjct: 768 RHRW-HKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTFYGPF 826
Query: 464 APPQTGVVAVQNLSNNQA---SFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALI 520
P +G AVQ+++N+ A SFRIAAT VL + I KK+KL G P KIFK TA I
Sbjct: 827 VAPNSGFCAVQSVANSFAKAGSFRIAATGSVLNIDQSTDIVKKLKLTGVPYKIFKNTAFI 886
Query: 521 KDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 580
K MF+S LEVA+ EG +RTVSGIRGQVKKA +E G+ R TFED+I
Sbjct: 887 KKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGH-------------FRATFEDKI 933
Query: 581 LMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYK 640
LMSDIVF+R W V++ +F +T L+ W GM+ E+R E L P+ NS Y+
Sbjct: 934 LMSDIVFLRAWYPVQVRKFCTMVTNLLETDKTEWNGMRLTGEVRHELGLKTPLRPNSQYQ 993
Query: 641 PIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQ 700
I R R FNPL +P SLQA LPF S+ K + R +P +R V++ ERKV L Q+
Sbjct: 994 EIVRPSRHFNPLKVPASLQAQLPFNSRQKALRPRSKPTYMQKRTVLLNAEERKVRDLLQK 1053
Query: 701 LQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKK 755
+ + +K KRK K+ + K+EQ +++REE+ E + + K +++
Sbjct: 1054 VMTLHTDKEAKRKAKKAAEHERYHKRMQKEEQAYIEKKREEKAEWFAQHGKRLRQ 1108
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 364 bits (934), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 236/669 (35%), Positives = 372/669 (55%), Gaps = 72/669 (10%)
Query: 118 NELKLTKSSLRRCANLIQLVYGKSTSTSETLSK------EVQDSIEGEESDEDEFFKPKV 171
N+LK T+S +R N+ +L+Y + S E + + + +D + EE +D+FF+ K
Sbjct: 535 NKLKKTESK-KRTWNIGKLIYMDNISPEECIRRWRGEDDDSKDESDIEEDVDDDFFRKK- 592
Query: 172 EGNKLREGLDSGIVNTDD-CSKIKSYEDL-KSWKQEEVYESIRDRFVTGDWSKAAQRNQV 229
+G +EG V+ + ++E L K WK ++I++RF+ A
Sbjct: 593 DGTVTKEGNKDHAVDLEKFVPYFDTFEKLAKKWKS---VDAIKERFLG-----AGILGND 644
Query: 230 SKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDN----------------------SGCE 267
+K KS+ ++ + +YGD+EDLE G E Q +DN + +
Sbjct: 645 NKTKSDSNEGGEELYGDFEDLEDGNPSE-QAEDNSDKESEDEDENEDTNGDDDNSFTNFD 703
Query: 268 GIENEDESAVEERRL---KKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLV 324
E +D + +ER + KK LRA+F+++ + ++E NE D
Sbjct: 704 AEEKKDLTMEQEREMNAAKKEKLRAQFEIEEGENFKEDDENNEYDT------------WY 751
Query: 325 DQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVL 384
+ K +I + ++N E ++ R +EGF+ G+Y+R+ VP E V+ F+P P++
Sbjct: 752 ELQKAKISKQLEINNIEYQEMTPEQRQRIEGFKAGSYVRIVFEKVPMEFVKNFNPKFPIV 811
Query: 385 VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHR 444
+GG+ E G ++ RL+RHRW HKK+LK+ DP+++S+GWRRFQT+P+Y D R R
Sbjct: 812 MGGLLPTEIKFGIVKARLRRHRW-HKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTR 870
Query: 445 MLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQAS--FRIAATAVVLEFNHEVKIKK 502
MLKYTPEH +C A F+GPL P T VQ ++N+ FRIAAT +V E + ++I K
Sbjct: 871 MLKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIEIVK 930
Query: 503 KIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKR 562
K+KLVG+P KIFK TA IKDMF+S +EVA+ EG +++TVSGIRG++K+A ++P
Sbjct: 931 KLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRAL-----SKP-- 983
Query: 563 KGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAE 622
EG R FED+ILMSDIV +R W V + +FYNP+T+ L W+G++ +
Sbjct: 984 ------EGHYRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLLKEKTEWKGLRLTGQ 1037
Query: 623 LRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENR 682
+R NL P N +S Y I R R FN L +PK++Q LPF+S+ + +K+ +
Sbjct: 1038 IRAAMNLETPSNPDSAYHKIERVERHFNGLKVPKAVQKELPFKSQIHQMKPQKKKTYMAK 1097
Query: 683 RAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREER 742
RAVV+ E+K Q++ I K KRK ++ ++KE + AK E+ +R +E++
Sbjct: 1098 RAVVLGGDEKKARSFIQKVLTISKAKDSKRKEQKASQRKERLKKLAKMEEEKSQRDKEKK 1157
Query: 743 RERYREQDK 751
+E + + K
Sbjct: 1158 KEYFAQNGK 1166
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats.
Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 361 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 420
Y+R+EI +VP E V+ DP +P+++GG+G E NVGY+Q+RLK+HRW+ KK+LKSRDPII
Sbjct: 2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPII 60
Query: 421 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 461
S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats.
Identities = 63/101 (62%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Query: 361 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 420
Y+R+EI +VP E V+ DP +P+++GG+G E NVGY+++ LK+HRW+ KK+LKSRDPII
Sbjct: 2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEMHLKKHRWY-KKILKSRDPII 60
Query: 421 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 461
S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats.
Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 361 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 420
Y+R+EI +VP E V+ FDP +P+++GG+G E NVG++Q+RLK+HRW+ KK+LKS+DPII
Sbjct: 2 YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMRLKKHRWY-KKILKSQDPII 60
Query: 421 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 461
S+GWRRFQTI +Y IED +GR R+LKYTP+H+HC A FW
Sbjct: 61 FSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 101
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 21/261 (8%)
Query: 354 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVL 413
EG G Y+ + I VP ++E+F P+++ + EQ + M + ++RH + + +
Sbjct: 561 EGAMVGWYVTVHISAVPVSVMEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPG-NNEPI 619
Query: 414 KSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV 473
K+++ +I G+RRF+ P+++ + +H+ ++ + T + P+ P V+
Sbjct: 620 KAKEELIFHCGFRRFRASPLFSQHSSADKHKSERFLRSDTSVVVTVYAPITFPPASVLVF 679
Query: 474 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC 533
+ N + AT +L N + + K+I L G+P KI K+TA+++ MF + +V
Sbjct: 680 KQRYNGMQD--LVATGSLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWF 737
Query: 534 EGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 593
+ E+RT G RG + KE +G G +C F+ ++ D V M +
Sbjct: 738 KPVELRTKWGRRGHI----KEPLGTH----------GHMKCHFDGQLKSQDTVLMNLYKR 783
Query: 594 VEIPRFYNPLTTALQPRDKIW 614
V ++P PR W
Sbjct: 784 VYPKWTFDPYV----PRPVTW 800
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 132/285 (46%), Gaps = 24/285 (8%)
Query: 318 PNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYF 377
P + + Q + + RK++ E+ E EG G Y+ + + DVP +VEYF
Sbjct: 520 PRDYARIFQFQNFVNTRKRI-------FKEIEEKEAEGAEVGWYVTLHVSDVPVSVVEYF 572
Query: 378 DPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIE 437
P++ + EQ + + + + R+ + + +K+++ +I G+RRF+ P+++
Sbjct: 573 RQGAPLIAFSLLPYEQKMSVLNMVVSRNPG-NTEPVKAKEELIFHCGFRRFRASPLFSQH 631
Query: 438 DRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHE 497
+ +H+ ++ + T + P+ P V+ + N S + AT + + +
Sbjct: 632 TAADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRRNGMHS--LIATGHLFSVDPD 689
Query: 498 VKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIG 557
+ K++ L G+P KIF K A+++ MF + +V + E+RT G RG + KE +G
Sbjct: 690 RMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHI----KEPLG 745
Query: 558 NQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNP 602
G +C+F+ ++ D V M + V Y+P
Sbjct: 746 TH----------GHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDP 780
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 26/249 (10%)
Query: 352 ELEGFRTGTYLRMEIHDVP------FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH 405
E EG G Y+ + + +VP F+ + D ++V G+ E + M V L+R
Sbjct: 551 EFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDN---IIVYGMLPHEHQMCVMNVVLQRM 607
Query: 406 RWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP 465
+ LKS++ +I+ G+RRF P+Y+ +H+ +Y + ATF+ P+
Sbjct: 608 PD-SEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQF 666
Query: 466 PQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFT 525
P V+A + N ++ + A +L N + + K++ L G+P +I +K+A I+ MF
Sbjct: 667 PPAPVLAFK--VNPDSTLALVARGRLLSCNPDRIVLKRVVLSGHPMRINRKSASIRYMFF 724
Query: 526 SDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDI 585
+V + ++RT G G + KE +G G +C F+ ++ D
Sbjct: 725 YKEDVEYFKPVKLRTKCGRLGHI----KESLGTH----------GHMKCYFDGQLRSYDT 770
Query: 586 VFMRGWADV 594
FM + V
Sbjct: 771 AFMYLYKRV 779
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 413 LKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVA 472
+K+++ +I G+RRF+ P+++ + +H++ ++ M +AT + P+ P V+
Sbjct: 608 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLL 667
Query: 473 VQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQ 532
+ SN S + AT ++ + + + K++ L G+P KIF K A+++ MF + +V
Sbjct: 668 FKQKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLW 725
Query: 533 CEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA 592
+ E+RT G RG + KE +G G +C+F+ ++ D V M +
Sbjct: 726 FKPVELRTKWGRRGHI----KEPLGTH----------GHMKCSFDGKLKSQDTVLMNLYK 771
Query: 593 DVEIPRFYNP 602
V Y+P
Sbjct: 772 RVFPKWTYDP 781
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 17/248 (6%)
Query: 355 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLK 414
G G Y+ + + +VP +VE F P++ + EQ + + + ++R + + +K
Sbjct: 552 GAEVGCYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPG-NTEPVK 610
Query: 415 SRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQ 474
+++ +I G+RRF+ P+++ + +H++ ++ M +AT + P+ P V+ +
Sbjct: 611 AKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFK 670
Query: 475 NLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCE 534
SN S + AT ++ + + + K++ L G+P K+F K A+++ MF + +V +
Sbjct: 671 QKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFK 728
Query: 535 GKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 594
E+RT G RG + KE +G G +C+F ++ D V M + V
Sbjct: 729 PVELRTKWGRRGHI----KEPLGTH----------GHMKCSFNGKLKSQDTVLMNLYKRV 774
Query: 595 EIPRFYNP 602
Y+P
Sbjct: 775 FPKWTYDP 782
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 357 RTGTYLRMEIHDVPFEMVEYFD-PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKS 415
+ G + +E+ +VP E+ EY++ P + +++ + E + Q +H + + + +S
Sbjct: 543 KPGKAVYVELRNVPIEIFEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPI-ES 601
Query: 416 RDPIIVSIGWRRFQTIPVYAIEDRSGRHRML----KYTPEHMHCLATFWGPLAPPQTGVV 471
++ +++ IG RRF P+Y+ SG L +Y P +A+ P+ ++
Sbjct: 602 KEELLLQIGPRRFMVRPLYSDPTASGASNNLQKYHRYLPPKQAVIASVISPIVFGNVPII 661
Query: 472 AVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVA 531
+ S+N S R+AAT + + I K+ L G+P K+ KK I+ MF + +V
Sbjct: 662 MFKKSSDN--SLRLAATGSYVNCDTNSVIAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVI 719
Query: 532 QCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 588
+ ++ T G G + KE +G G + TF +I + D V M
Sbjct: 720 WFKPIQLFTKQGRTGYI----KEPLGTH----------GYFKATFNGKITVQDTVAM 762
>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium
discoideum GN=tsr1 PE=3 SV=1
Length = 826
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 361 YLRMEIHDVPFEMVE---YFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD 417
Y+R+ + + P ++VE P + G+ E + + +++H+ + + V +S++
Sbjct: 592 YVRIHLVNGPKQLVERNTTAITTKPEVAVGLYRYENKISLLHFSVEKHKSYEETV-RSKE 650
Query: 418 PIIVSIGWRRFQTIPVYAIED-RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNL 476
+ GWR+F T P+Y+I + + K+ + +AT +GP+ P ++ +
Sbjct: 651 EVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFLLPARNTMATIYGPITYPPAPLL----I 706
Query: 477 SNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCK-IFKKTALIKDMFTSDLEVAQCEG 535
N + + AT + N + I K+I L G K I KK +KDMF ++ +
Sbjct: 707 FNGKDCNELVATGYLSSVNPDRIICKRIILTGVIAKSISKKFVTVKDMFYYPEDINWFKK 766
Query: 536 KEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 594
E+ T G G + KE +G G +C F+ + D V M + V
Sbjct: 767 VELYTKMGRVGHI----KEPLGTH----------GRMKCQFDGTMNQQDTVCMNLYKRV 811
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 104/231 (45%), Gaps = 18/231 (7%)
Query: 359 GTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDP 418
G + + I +VP ++E + +++ + EQ + + + LK+H +
Sbjct: 532 GVFASVYIENVPVSVMEAYKETKNLVLFQLLPHEQKMSILNMVLKKHPSCTVPIGSEDQK 591
Query: 419 IIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLS 477
I +G+R+F+ V + + ++ ++ P +AT + P+ P T + Q+
Sbjct: 592 FIFYVGFRQFEAHAVLSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDK 651
Query: 478 NNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKE 537
Q + AT VL+ N + + K+ L G+P KI ++ +++ MF + ++ + E
Sbjct: 652 GRQ---ELVATGSVLDTNPDRIVLKRTVLSGHPYKINRRAVVVRYMFFNREDIDWFKPVE 708
Query: 538 VRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 588
+ T SG RG +K+A +G G +C F+ ++ D V +
Sbjct: 709 LYTPSGRRGHIKEA----VGTH----------GHMKCRFDQQLNAQDSVML 745
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 113/253 (44%), Gaps = 19/253 (7%)
Query: 359 GTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD- 417
G + + I +VP ++E + +++ + E + + + LK+H + ++
Sbjct: 528 GAFASVFIENVPVAVLEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPITSDQNQ 587
Query: 418 PIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNL 476
I +G+R+F+ V++ + ++ ++ P +AT + P+ P T + Q+
Sbjct: 588 KFIFYVGFRQFEANAVFSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDD 647
Query: 477 SNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGK 536
Q + AT +L+ N + + K+ L G+P KI ++ +++ MF + ++ +
Sbjct: 648 KGRQ---ELVATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWFKPV 704
Query: 537 EVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEI 596
E+ T SG RG +K+A +G G +C F+ ++ D V + + V
Sbjct: 705 ELYTPSGRRGHIKEA----VGTH----------GNMKCRFDQQLNAQDSVMLNLYKRVFP 750
Query: 597 PRFYNPLTTALQP 609
Y+ +L P
Sbjct: 751 VWNYSIFNRSLNP 763
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 22/247 (8%)
Query: 358 TGTYLRMEIHDVPFEMVEYFDPCHPVL-VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSR 416
G +RM I F + + DP + V G+ L E + L+R + K V S+
Sbjct: 553 AGDRIRMFIRFPKFLLEKIQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPV-PSQ 611
Query: 417 DPIIVSIGWRRFQTIPVYAIEDRS--GRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQ 474
+PI+V G RR+ P+++ S H+ ++ +AT P+ Q+ + +
Sbjct: 612 EPIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFK 671
Query: 475 NLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCE 534
+ + + L +H + K+ L G+P + K ++ MF +V +
Sbjct: 672 PSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFK 731
Query: 535 GKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM----RG 590
+ T SG G + KE +G G + TF+ ++ D+V M R
Sbjct: 732 SIPLFTKSGRSGFI----KESLGTH----------GYFKATFDGKLSAQDVVAMSLYKRM 777
Query: 591 WADVEIP 597
W +P
Sbjct: 778 WPMPSLP 784
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,550,216
Number of Sequences: 539616
Number of extensions: 14650635
Number of successful extensions: 176302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 1551
Number of HSP's that attempted gapping in prelim test: 84223
Number of HSP's gapped (non-prelim): 32706
length of query: 762
length of database: 191,569,459
effective HSP length: 125
effective length of query: 637
effective length of database: 124,117,459
effective search space: 79062821383
effective search space used: 79062821383
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)