Query 004304
Match_columns 762
No_of_seqs 262 out of 539
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 21:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 3E-130 6E-135 1068.2 24.5 567 127-758 495-1077(1077)
2 PF04950 DUF663: Protein of un 100.0 1.6E-94 3.5E-99 756.6 7.7 289 276-594 9-297 (297)
3 KOG1980 Uncharacterized conser 100.0 9.8E-69 2.1E-73 591.9 16.0 229 357-602 522-750 (754)
4 COG5177 Uncharacterized conser 100.0 1.2E-53 2.5E-58 463.1 6.0 226 355-596 532-760 (769)
5 KOG1951 GTP-binding protein AA 99.6 1.3E-14 2.7E-19 134.6 9.6 102 653-754 1-104 (115)
6 KOG0461 Selenocysteine-specifi 96.7 0.0015 3.2E-08 72.1 4.1 209 352-582 255-492 (522)
7 KOG0943 Predicted ubiquitin-pr 93.5 0.049 1.1E-06 67.1 2.9 12 349-360 2094-2105(3015)
8 KOG0943 Predicted ubiquitin-pr 88.5 0.26 5.7E-06 61.2 2.3 15 618-632 2553-2567(3015)
9 KOG3130 Uncharacterized conser 84.0 0.82 1.8E-05 51.7 3.1 12 42-53 256-267 (514)
10 KOG1029 Endocytic adaptor prot 82.9 2.2 4.8E-05 51.7 6.1 30 722-751 372-401 (1118)
11 KOG1999 RNA polymerase II tran 78.9 2.2 4.8E-05 52.6 4.5 33 489-521 572-613 (1024)
12 PF04050 Upf2: Up-frameshift s 77.8 0.85 1.8E-05 45.6 0.6 11 112-122 61-71 (170)
13 PF04147 Nop14: Nop14-like fam 76.2 2.9 6.3E-05 51.4 4.5 10 206-215 445-454 (840)
14 PF04147 Nop14: Nop14-like fam 73.8 4.7 0.0001 49.7 5.4 15 639-655 742-756 (840)
15 PF02724 CDC45: CDC45-like pro 72.3 3.7 7.9E-05 48.9 4.0 42 322-368 466-507 (622)
16 KOG1991 Nuclear transport rece 67.2 4.4 9.6E-05 50.3 3.2 7 98-104 950-956 (1010)
17 PF02724 CDC45: CDC45-like pro 66.7 4.7 0.0001 48.1 3.2 20 324-343 464-483 (622)
18 COG2451 Ribosomal protein L35A 64.8 29 0.00063 32.7 7.2 84 483-592 5-97 (100)
19 PRK04000 translation initiatio 60.1 1.5E+02 0.0034 33.5 13.5 118 353-491 284-410 (411)
20 KOG0262 RNA polymerase I, larg 60.1 14 0.0003 47.3 5.6 47 92-139 1389-1436(1640)
21 smart00017 OSTEO Osteopontin. 59.3 9.1 0.0002 41.1 3.4 8 26-33 50-57 (287)
22 TIGR03680 eif2g_arch translati 58.7 1.4E+02 0.0029 33.8 12.7 118 353-491 279-405 (406)
23 PF04889 Cwf_Cwc_15: Cwf15/Cwc 55.9 5.4 0.00012 42.5 1.1 7 146-152 199-205 (244)
24 PF12253 CAF1A: Chromatin asse 54.9 12 0.00025 33.8 2.9 13 45-57 37-49 (77)
25 PF04889 Cwf_Cwc_15: Cwf15/Cwc 52.9 7 0.00015 41.8 1.4 6 163-168 206-211 (244)
26 cd03706 mtEFTU_III Domain III 52.0 87 0.0019 27.8 8.0 71 410-494 21-93 (93)
27 PF03344 Daxx: Daxx Family; I 51.4 5 0.00011 48.7 0.0 11 491-501 698-708 (713)
28 PF05764 YL1: YL1 nuclear prot 49.1 17 0.00037 38.5 3.5 6 358-363 230-235 (240)
29 PTZ00007 (NAP-L) nucleosome as 48.9 19 0.00042 40.3 4.0 6 34-39 186-191 (337)
30 PF01247 Ribosomal_L35Ae: Ribo 44.9 33 0.00071 32.2 4.2 54 514-581 18-84 (95)
31 PRK10512 selenocysteinyl-tRNA- 44.6 1.7E+02 0.0038 35.2 11.2 114 353-498 228-344 (614)
32 PF05764 YL1: YL1 nuclear prot 44.4 21 0.00047 37.7 3.4 9 334-342 197-205 (240)
33 PTZ00041 60S ribosomal protein 44.3 50 0.0011 32.3 5.5 84 482-591 17-116 (120)
34 KOG2023 Nuclear transport rece 42.5 13 0.00029 44.9 1.7 14 206-219 476-489 (885)
35 CHL00071 tufA elongation facto 40.3 3.6E+02 0.0079 30.5 12.4 127 354-494 277-407 (409)
36 KOG2051 Nonsense-mediated mRNA 39.6 20 0.00043 45.2 2.6 30 25-55 870-899 (1128)
37 PRK12317 elongation factor 1-a 39.6 3.7E+02 0.0081 30.3 12.3 131 354-497 280-423 (425)
38 PRK00247 putative inner membra 38.7 86 0.0019 36.4 7.2 41 684-726 314-354 (429)
39 PRK04337 50S ribosomal protein 37.7 48 0.001 30.8 4.0 53 515-581 19-76 (87)
40 cd03708 GTPBP_III Domain III o 37.2 1.5E+02 0.0032 25.8 7.0 68 410-493 16-86 (87)
41 TIGR00483 EF-1_alpha translati 36.2 4.6E+02 0.0099 29.7 12.4 127 354-495 282-423 (426)
42 KOG4364 Chromatin assembly fac 35.5 2.1E+02 0.0046 35.2 9.8 22 646-667 221-242 (811)
43 PTZ00327 eukaryotic translatio 33.9 4.6E+02 0.01 30.6 12.1 67 410-493 384-451 (460)
44 KOG1999 RNA polymerase II tran 33.8 28 0.00061 43.6 2.6 14 418-431 536-549 (1024)
45 smart00017 OSTEO Osteopontin. 33.0 50 0.0011 35.8 3.9 7 30-36 41-47 (287)
46 PLN03126 Elongation factor Tu; 32.2 5.5E+02 0.012 30.1 12.4 75 411-494 400-476 (478)
47 PF15236 CCDC66: Coiled-coil d 31.7 5.7E+02 0.012 26.2 10.8 72 676-749 30-106 (157)
48 PTZ00141 elongation factor 1- 30.1 9.1E+02 0.02 27.9 13.6 129 353-495 287-430 (446)
49 COG1866 PckA Phosphoenolpyruva 30.0 37 0.0008 39.8 2.5 96 388-498 147-249 (529)
50 PTZ00415 transmission-blocking 28.5 56 0.0012 43.7 3.9 11 582-592 847-857 (2849)
51 TIGR00485 EF-Tu translation el 26.7 7.2E+02 0.016 27.9 11.9 70 411-494 321-392 (394)
52 PRK12735 elongation factor Tu; 26.5 6.5E+02 0.014 28.4 11.5 124 352-494 267-394 (396)
53 PRK00049 elongation factor Tu; 25.7 1E+03 0.022 26.9 12.8 122 353-494 268-394 (396)
54 KOG2141 Protein involved in hi 24.9 32 0.00069 42.1 1.0 20 684-703 752-771 (822)
55 PF08595 RXT2_N: RXT2-like, N- 24.9 38 0.00081 34.0 1.3 16 27-42 24-39 (149)
56 KOG2652 RNA polymerase II tran 24.6 62 0.0013 36.5 3.0 8 132-139 305-312 (348)
57 KOG2023 Nuclear transport rece 23.4 48 0.001 40.5 2.0 9 597-605 786-794 (885)
58 PF08595 RXT2_N: RXT2-like, N- 23.2 41 0.00089 33.7 1.2 18 120-137 129-146 (149)
59 PF00970 FAD_binding_6: Oxidor 23.0 2.7E+02 0.0059 24.3 6.3 64 354-428 28-97 (99)
60 TIGR00475 selB selenocysteine- 22.1 8.8E+02 0.019 29.1 12.0 111 353-498 230-341 (581)
61 PRK13035 superantigen-like pro 21.7 3.9E+02 0.0084 29.0 8.0 136 425-581 47-213 (234)
62 cd06185 PDR_like Phthalate dio 21.5 1.5E+02 0.0032 29.4 4.7 40 355-406 25-64 (211)
63 PF15627 CEP76-C2: CEP76 C2 do 21.4 2.2E+02 0.0048 29.0 5.9 60 414-473 33-92 (156)
64 KOG1144 Translation initiation 20.8 5.1E+02 0.011 32.9 9.5 13 696-708 218-230 (1064)
65 PF11702 DUF3295: Protein of u 20.6 84 0.0018 37.2 3.1 10 42-51 267-276 (507)
66 KOG1029 Endocytic adaptor prot 20.3 6E+02 0.013 32.3 9.9 10 539-548 206-216 (1118)
67 PTZ00266 NIMA-related protein 20.1 4.2E+02 0.0091 34.3 9.1 6 519-524 274-279 (1021)
68 PTZ00482 membrane-attack compl 20.0 1.9E+02 0.004 36.5 6.0 42 485-527 613-655 (844)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-130 Score=1068.21 Aligned_cols=567 Identities=32% Similarity=0.572 Sum_probs=496.7
Q ss_pred hhhhhhhhhhhccCCCCchhhhcccc-cC-CC-C--CC-CCCCCCCccccccCcccccCCC-CCCCCCcccccccccccc
Q 004304 127 LRRCANLIQLVYGKSTSTSETLSKEV-QD-SI-E--GE-ESDEDEFFKPKVEGNKLREGLD-SGIVNTDDCSKIKSYEDL 199 (762)
Q Consensus 127 ~~R~~~l~~lvY~~~~~~~~~~~~~~-~~-~~-~--~~-~~~~~~fFk~~~~~~~~~e~~~-~~~~~~~d~~~~~~~~~~ 199 (762)
..|..|+.+++|+++++|++|+.+|+ ++ .+ + .. ++++++||++++...+. +..+ ....+ -..+.| .
T Consensus 495 ~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~-~s~~~ek~~~-~~fe~L-----~ 567 (1077)
T COG5192 495 GKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES-ISSNHEKLME-SEFEEL-----K 567 (1077)
T ss_pred ccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhcccc-cccchhhhch-hHHHHH-----H
Confidence 45567999999999999999999998 21 11 1 11 26677899976655544 1111 11222 113344 6
Q ss_pred cCCCchHhHHHHhhhhccCccchhhhhccccCCCCCCCCCCccccCCCccccccccccCCCCCCC-CC----CCCCc-c-
Q 004304 200 KSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNS-GC----EGIEN-E- 272 (762)
Q Consensus 200 ~~W~~e~~~~~ir~~Fvtg~w~~~~~~~q~~~~~~~~~~~d~e~~GdFEDLEtge~~~~~~~~~~-~~----~~~~~-~- 272 (762)
.+|+ .++.|+.||.++....... ..++.- .|...|+||||+..|.....+.+++ ++ +..+. .
T Consensus 568 kkw~---s~~~lk~RF~~~~~lds~e-------g~EEl~-qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e 636 (1077)
T COG5192 568 KKWS---SLAQLKSRFQKDATLDSIE-------GEEELI-QDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADE 636 (1077)
T ss_pred HHHh---hHHHHHHHhhccccccccc-------chhhhh-hchhccCcccccccccccccchhhccCCcccccchhhccc
Confidence 7895 4899999999987653111 111111 3445689999998765432211111 11 01111 1
Q ss_pred -c-HHHHHHHHHHHHHHhhhhhhccCCCCCcchhhccccccccCCCCCCcchhHHHHHHHHHHHHHhhHHHhcCCCHHHH
Q 004304 273 -D-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTR 350 (762)
Q Consensus 273 -~-e~~~~k~~~kK~~lk~~F~~e~d~~~~~~~~~~~~~~~~~~~~e~~~~~~yd~~K~~~~~q~~~N~~ef~~ld~~~R 350 (762)
+ +.+++.||+||++|+.+|+.+..+ +++..+.+||+.+|+.+++|+.||+.||++|++++|
T Consensus 637 ~~~e~ErE~na~kKE~lr~~Fe~eer~-----------------d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r 699 (1077)
T COG5192 637 VDYETEREENARKKEELRGNFELEERG-----------------DPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESR 699 (1077)
T ss_pred cchHHHhhhhhhhhhhhhcceeehhcc-----------------CccccccchHHHHHHHHHHHHhhhhhhhhhcCCcce
Confidence 2 788999999999999999998753 344456789999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee
Q 004304 351 LELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 430 (762)
Q Consensus 351 ~~~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt 430 (762)
+.++||++|+||||+|+.||.+||.+|+|.+|||+|||||.|.++|+||+||+|||| |++|||++||||||+|||||||
T Consensus 700 ~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTNdPlifS~GWRRFQs 778 (1077)
T COG5192 700 VVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQS 778 (1077)
T ss_pred eEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccCCCeEEEechhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeeeeecCCCceeEEeecCCCceEEEEEEeecCCCCccEEEEEeccCCCCCeEEEEEEEeeeccCcceEEEeEEEecee
Q 004304 431 IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYP 510 (762)
Q Consensus 431 ~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~~IvKKlkLtG~P 510 (762)
+||||+.|+.+|+|||||||+||||++|||||+++|||||||+|+. .++|||+|+|+|.++|.+..|||||||+|||
T Consensus 779 iPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse---~g~frv~a~g~i~dv~~~~~lvkklklvg~p 855 (1077)
T COG5192 779 IPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSE---KGDFRVLALGTITDVNGDAKLVKKLKLVGYP 855 (1077)
T ss_pred cceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEec---CCceEEEEeeeeEeccccHHHHhhhhhccCc
Confidence 9999999999999999999999999999999999999999999984 4579999999999999999999999999999
Q ss_pred eEEeecceEEeccCCChhhhccccCCeeeeccCccceeeccccccccCCCCCCCCCCCCceeEeeeccccccccEEEEec
Q 004304 511 CKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRG 590 (762)
Q Consensus 511 ~KI~KkTAfIK~MF~s~lEV~~Fkga~LrTksGiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~sDiVfLrl 590 (762)
++|++||||||+||+|.+||++|+||+|+||||+||+||.|+|+ +|++||.|+++|+|||||.||+
T Consensus 856 ~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~k--------------~g~yra~fe~kmlmsdii~lr~ 921 (1077)
T COG5192 856 KQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGK--------------NGEYRAVFEGKMLMSDIITLRC 921 (1077)
T ss_pred HHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccCC--------------CccchheeccchhhhheeeEEe
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceecccCcccccccccCCCCCccccccchHHHHHHHcCCCCCCCCCCCCccccCCCCCCCCCCCCHhHHhhCCCCCCCCC
Q 004304 591 WADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD 670 (762)
Q Consensus 591 wkrV~p~~fynpvt~~l~~~~~~W~gmrt~~elR~e~~i~~p~~~dS~Yk~ieR~~r~fnpl~iPk~Lq~~LPfkskpk~ 670 (762)
|+||.+++||+||+|||+ .|+|+|.++|||...||.+|.+++|.|..+||..++||.|.+|+.+|+.|||+
T Consensus 922 ~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~~lp~~----- 992 (1077)
T COG5192 922 FVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLD----- 992 (1077)
T ss_pred eeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHhhCCcc-----
Confidence 999999999999999996 69999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccccccccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004304 671 IPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD 750 (762)
Q Consensus 671 ~~~~~~~~~~~~ravv~~~~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~e~~~~~~~ke~~k~~~r~~g 750 (762)
+++.+++.+|+||+.|.|++....+|..-++.+.|..+++++++-.++++.++.+|.|++|.+|.|+.++++|.+.|
T Consensus 993 ---kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~~~d~~~e~~ 1069 (1077)
T COG5192 993 ---KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069 (1077)
T ss_pred ---hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 004304 751 KLMKKIRR 758 (762)
Q Consensus 751 k~~~~~~~ 758 (762)
|++-+|.+
T Consensus 1070 kkr~kk~r 1077 (1077)
T COG5192 1070 KKRLKKKR 1077 (1077)
T ss_pred hhhhhccC
Confidence 99877653
No 2
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=1.6e-94 Score=756.61 Aligned_cols=289 Identities=44% Similarity=0.707 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCcchhhccccccccCCCCCCcchhHHHHHHHHHHHHHhhHHHhcCCCHHHHHHhcC
Q 004304 276 AVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEG 355 (762)
Q Consensus 276 ~~~k~~~kK~~lk~~F~~e~d~~~~~~~~~~~~~~~~~~~~e~~~~~~yd~~K~~~~~q~~~N~~ef~~ld~~~R~~~eG 355 (762)
.+.++.+|++.||..+++++|..+. + .........+|+....+..++..+|++ .|+.++|.+.+|
T Consensus 9 ~ar~Rf~KyRgLKs~r~s~wD~~E~-~-----------~~lP~~y~ri~~f~n~~~~k~~~~~~~---~~~~~~~~~~~g 73 (297)
T PF04950_consen 9 PARERFQKYRGLKSFRTSEWDPDEK-D-----------PNLPEDYSRIFQFENFKRTKKRALKEA---ELDEEEREQEEG 73 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-c-----------ccccccccccccccccccccccccccc---cccccccccccc
Confidence 4566888999999999999986531 0 122335677888888888888888888 899999999999
Q ss_pred CCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeeee
Q 004304 356 FRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYA 435 (762)
Q Consensus 356 ~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~PIyS 435 (762)
+.||+||+|+|++||++++++|++++||||||||+||+++||||++|+||+| |++||||+||||||||||||||+||||
T Consensus 74 ~~~G~YVrI~i~~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~-~~~~lkSkd~li~~~G~Rrf~~~Pifs 152 (297)
T PF04950_consen 74 VRPGTYVRIEISNVPCEFVENFDPSYPLILGGLLPHEQKMSVVNFRIKRHRW-YEKPLKSKDPLIFSCGWRRFQTIPIFS 152 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eecCCCceeEEeecCCCceEEEEEEeecCCCCccEEEEEeccCCCCCeEEEEEEEeeeccCcceEEEeEEEeceeeEEee
Q 004304 436 IEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFK 515 (762)
Q Consensus 436 ~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~~IvKKlkLtG~P~KI~K 515 (762)
++++|+||||+||+|+||||+||||||++|||||||+|+..++...+|||+|||+|+++|++++|+|||+|+||||||||
T Consensus 153 ~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k 232 (297)
T PF04950_consen 153 QEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHK 232 (297)
T ss_dssp -------------------------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEEC
Confidence 99999999999999999999999999999999999999997666668999999999999999999999999999999999
Q ss_pred cceEEeccCCChhhhccccCCeeeeccCccceeeccccccccCCCCCCCCCCCCceeEeeeccccccccEEEEecceec
Q 004304 516 KTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 594 (762)
Q Consensus 516 kTAfIK~MF~s~lEV~~Fkga~LrTksGiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~sDiVfLrlwkrV 594 (762)
||||||+||||++||+||+||+|+|+||+||+||+|||| ||+|||+|+++|++||||||+||+||
T Consensus 233 ~~a~vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt--------------~G~fka~F~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 233 RTAVVRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGT--------------HGYFKATFEDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp SSCEECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTT--------------TTBBEEEESS---SS-EEEEE-----
T ss_pred ceEEhhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECC--------------CCcEEEEECCcCCCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999998 99999999999999999999999998
No 3
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.8e-69 Score=591.90 Aligned_cols=229 Identities=25% Similarity=0.399 Sum_probs=224.1
Q ss_pred CCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeeeee
Q 004304 357 RTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAI 436 (762)
Q Consensus 357 ~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~PIyS~ 436 (762)
.+|+||||+|.|||..+++.|.+..+|||+||||||++++|+||.++||+- |..||||+.+|||+||+|||.++|+||+
T Consensus 522 ~~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~-~e~Plkske~livq~G~Rrf~i~PlfSs 600 (754)
T KOG1980|consen 522 IPGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPG-YEEPLKSKEELIVQCGFRRFDINPLFSS 600 (754)
T ss_pred CCCceEEEEeecCcHHHHHHHhhccceeeeeccchhhhheeeEEEEecCCC-CCccccccceeEEEeccceEEecccccc
Confidence 589999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ecCCCceeEEeecCCCceEEEEEEeecCCCCccEEEEEeccCCCCCeEEEEEEEeeeccCcceEEEeEEEeceeeEEeec
Q 004304 437 EDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKK 516 (762)
Q Consensus 437 ~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~~IvKKlkLtG~P~KI~Kk 516 (762)
++.|++|||.||+|+.+..+|||||||+|||+|||+|+..+++ +.+++|||++++|||+|+|+||++|+||||||||+
T Consensus 601 ~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~~--~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk 678 (754)
T KOG1980|consen 601 HTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSDG--SLELIATGSLLNCDPDRIVAKRAVLSGHPFKIHKK 678 (754)
T ss_pred CCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCCc--ccceeeeeeeeccCCcceeEeeeeecCCCceeeee
Confidence 9999999999999999999999999999999999999987654 78899999999999999999999999999999999
Q ss_pred ceEEeccCCChhhhccccCCeeeeccCccceeeccccccccCCCCCCCCCCCCceeEeeeccccccccEEEEecceeccc
Q 004304 517 TALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEI 596 (762)
Q Consensus 517 TAfIK~MF~s~lEV~~Fkga~LrTksGiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~sDiVfLrlwkrV~p 596 (762)
.|+|||||||++||.||+|++|+|++|++||||+|||| ||+|||+|+++|+.+|+|+|+|||||||
T Consensus 679 ~v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGT--------------HG~fKc~FdgkLksqDtV~MsLYKRvfP 744 (754)
T KOG1980|consen 679 YVVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGT--------------HGYFKCYFDGKLKSQDTVMMSLYKRVFP 744 (754)
T ss_pred eEEEeeecCCHhHeeeecceeeeccccccccccccccC--------------cceeEEEecCcccccchHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred Cccccc
Q 004304 597 PRFYNP 602 (762)
Q Consensus 597 ~~fynp 602 (762)
.|-|++
T Consensus 745 ~~~y~~ 750 (754)
T KOG1980|consen 745 KWTYWN 750 (754)
T ss_pred cccccc
Confidence 999954
No 4
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-53 Score=463.08 Aligned_cols=226 Identities=22% Similarity=0.263 Sum_probs=215.9
Q ss_pred CCCCCcEEEEEEecCchhhhhccC-CCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeee
Q 004304 355 GFRTGTYLRMEIHDVPFEMVEYFD-PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPV 433 (762)
Q Consensus 355 G~~~G~YVrI~i~~VP~e~ve~fd-p~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~PI 433 (762)
...+|+.|||.|. +|..+++.+. |..-|+|+|||.||++.+|.||++.||.. |..||+|+++|++++|.|||.++|+
T Consensus 532 ~a~~G~~vri~lr-~p~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~e-ye~P~~s~E~~vvq~G~rr~~i~Pl 609 (769)
T COG5177 532 VAPDGQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFE-YEVPLKSEESMVVQLGHRRVDICPL 609 (769)
T ss_pred cCCCCcEEEEEEe-ccHHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhc-ccCCCCcccceeeeeccceEEEeeh
Confidence 3689999999999 9999999875 66777889999999999999999999999 9999999999999999999999999
Q ss_pred eeeec--CCCceeEEeecCCCceEEEEEEeecCCCCccEEEEEeccCCCCCeEEEEEEEeeeccCcceEEEeEEEeceee
Q 004304 434 YAIED--RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPC 511 (762)
Q Consensus 434 yS~~d--~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~~IvKKlkLtG~P~ 511 (762)
||... +|+-|||.||+|+....+|||+|||.|+++|||+|+.......+.+++|||+.++||++++|+||.+||||||
T Consensus 610 ~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPF 689 (769)
T COG5177 610 ISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPF 689 (769)
T ss_pred hccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCc
Confidence 99943 5789999999999999999999999999999999998755556889999999999999999999999999999
Q ss_pred EEeecceEEeccCCChhhhccccCCeeeeccCccceeeccccccccCCCCCCCCCCCCceeEeeeccccccccEEEEecc
Q 004304 512 KIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGW 591 (762)
Q Consensus 512 KI~KkTAfIK~MF~s~lEV~~Fkga~LrTksGiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~sDiVfLrlw 591 (762)
|+||+.++||||||||+||.||++++|+|++|+.|.||+|||| ||+|||||+++|..+|+|.|.||
T Consensus 690 k~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplGT--------------hGyFKatF~gki~~qD~VaMSLY 755 (769)
T COG5177 690 KNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGT--------------HGYFKATFSGKIKSQDKVAMSLY 755 (769)
T ss_pred ccceeEEEEeeecCCHhHeeeecchhhhhhcCccceecccccC--------------cceeeEEecCcccccchhhHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeccc
Q 004304 592 ADVEI 596 (762)
Q Consensus 592 krV~p 596 (762)
+|+||
T Consensus 756 KRm~p 760 (769)
T COG5177 756 KRMFP 760 (769)
T ss_pred HHhcc
Confidence 99996
No 5
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.3e-14 Score=134.59 Aligned_cols=102 Identities=39% Similarity=0.596 Sum_probs=97.9
Q ss_pred CCCHhHHhhCCCCCCCCCCCCCCCcccccccc--ccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004304 653 VIPKSLQAALPFESKPKDIPGRKRPLLENRRA--VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKD 730 (762)
Q Consensus 653 ~iPk~Lq~~LPfkskpk~~~~~~~~~~~~~ra--vv~~~~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~ 730 (762)
.||++||++|||+|+||.+++++++.++.+|| ||+.|+|+|++++|+++.|++.++..++++.++.++++++++.++.
T Consensus 1 ~iPKalqk~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~k~~~ 80 (115)
T KOG1951|consen 1 MIPKALQKALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREKKAKK 80 (115)
T ss_pred CccHHHHHhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004304 731 EQLTRKRQREERRERYREQDKLMK 754 (762)
Q Consensus 731 e~~~~~~~ke~~k~~~r~~gk~~~ 754 (762)
++....+.++.++..|+..|+.-.
T Consensus 81 ~~~~~~r~~~kkr~~~kk~~k~~~ 104 (115)
T KOG1951|consen 81 EEPLEQREKEKKREGPKKVGKSTL 104 (115)
T ss_pred hhhhhhhHHHHHHhhhcccchhHH
Confidence 999999999999999999887643
No 6
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0015 Score=72.06 Aligned_cols=209 Identities=15% Similarity=0.216 Sum_probs=136.0
Q ss_pred HhcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeee
Q 004304 352 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTI 431 (762)
Q Consensus 352 ~~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~ 431 (762)
.+..+..|..+-+.+..+...++++= |+|- .-+=...-.+-+.++.-++ |.++|+|+..+-+++|+---...
T Consensus 255 ~vtsa~~GdR~g~cVtqFd~klleRg------i~~~-pg~Lk~~~avl~~vepI~y-fr~~i~sk~K~Hi~VgheTVMa~ 326 (522)
T KOG0461|consen 255 RVTSAAAGDRAGFCVTQFDEKLLERG------ICGP-PGTLKSTKAVLATVEPIQY-FRKSINSKSKIHIAVGHETVMAE 326 (522)
T ss_pred hhhhhhcccceeeeeeccCHHHHhcc------ccCC-CcccceeeeeeEeecchHH-HhhhhhhcceEEEEehhhhhhhh
Confidence 34445666666666665544444431 1111 1111223345577888888 99999999999999999765554
Q ss_pred eeeeeecCC---------CceeEE-eecCC-CceE-----EEEEEeecCCCCccEEEEEecc--CCCCCeEEEEEEEeee
Q 004304 432 PVYAIEDRS---------GRHRML-KYTPE-HMHC-----LATFWGPLAPPQTGVVAVQNLS--NNQASFRIAATAVVLE 493 (762)
Q Consensus 432 PIyS~~d~n---------~R~R~l-KYtpe-hm~c-----~AtfyGPi~~p~tgvlafq~~~--~~~~~frI~ATG~Vl~ 493 (762)
-.|.....+ ...-+. -.+|. -.+| +.+|=-|++.|+-..+.-.... -...+-|++++|.+.-
T Consensus 327 ~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~~i~s~ld~d~h~~~CRlAF~Gi~~~ 406 (522)
T KOG0461|consen 327 CQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSNPIMSALDEDQHGSGCRLAFSGIFSQ 406 (522)
T ss_pred eEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCcccccHHHHhhhhhcCCCceEEEeeeehhh
Confidence 444432211 111122 12333 2345 6778889888873222221111 1245789999999876
Q ss_pred ccCc----------ceEEEeEEEeceeeEEeec-ceEEeccCCChhhhccccCCeeeeccCccceeeccccccccCCCCC
Q 004304 494 FNHE----------VKIKKKIKLVGYPCKIFKK-TALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKR 562 (762)
Q Consensus 494 ~D~~----------~~IvKKlkLtG~P~KI~Kk-TAfIK~MF~s~lEV~~Fkga~LrTksGiRG~IKkaLgt~~~~~~~~ 562 (762)
.=|+ +.|+||--=.|+--++.+. .+++++||--.-.+.-|.|-++.+.+|-||.|-.+.|.
T Consensus 407 ~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStGe~G~Ie~aFGq-------- 478 (522)
T KOG0461|consen 407 ILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTGERGKIEGAFGQ-------- 478 (522)
T ss_pred hCcccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccCCccceeccccC--------
Confidence 5555 3455555556666666554 35679999988888899999999999999999999998
Q ss_pred CCCCCCCceeEeeecccccc
Q 004304 563 KGGQPREGIARCTFEDRILM 582 (762)
Q Consensus 563 ~~~~~phG~fRatFedkIl~ 582 (762)
.|.||.||-++|..
T Consensus 479 ------sgKf~itf~~~lsp 492 (522)
T KOG0461|consen 479 ------SGKFRITFAEKLSP 492 (522)
T ss_pred ------cceEEEEecccCCh
Confidence 89999999999865
No 7
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.049 Score=67.07 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=6.5
Q ss_pred HHHHhcCCCCCc
Q 004304 349 TRLELEGFRTGT 360 (762)
Q Consensus 349 ~R~~~eG~~~G~ 360 (762)
.|..+-..+||+
T Consensus 2094 ekall~pA~pG~ 2105 (3015)
T KOG0943|consen 2094 EKALLLPARPGM 2105 (3015)
T ss_pred hhhhcccCCCCc
Confidence 344444566676
No 8
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=0.26 Score=61.21 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=9.4
Q ss_pred chHHHHHHHcCCCCC
Q 004304 618 KTVAELRREHNLSIP 632 (762)
Q Consensus 618 rt~~elR~e~~i~~p 632 (762)
||..+.|++.+|.+-
T Consensus 2553 kt~ReaRReqaiR~~ 2567 (3015)
T KOG0943|consen 2553 KTEREARREQAIRAG 2567 (3015)
T ss_pred HHHHHHHHHhhhhhc
Confidence 566666777666543
No 9
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=0.82 Score=51.66 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=6.1
Q ss_pred eeeecccCCCCC
Q 004304 42 FRKAIFGYGVDS 53 (762)
Q Consensus 42 krk~~~~d~~~~ 53 (762)
+|-+-+|+-++.
T Consensus 256 ~r~~~~n~sv~~ 267 (514)
T KOG3130|consen 256 QRNSQLNCSVNG 267 (514)
T ss_pred hhhhcccccccC
Confidence 444555555543
No 10
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=2.2 Score=51.65 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004304 722 EIEAERAKDEQLTRKRQREERRERYREQDK 751 (762)
Q Consensus 722 ~~~k~~~k~e~~~~~~~ke~~k~~~r~~gk 751 (762)
+..++++++-+...+|+.++||++-|++..
T Consensus 372 ElekqLerQReiE~qrEEerkkeie~rEaa 401 (1118)
T KOG1029|consen 372 ELEKQLERQREIERQREEERKKEIERREAA 401 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455556666666665543
No 11
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=78.86 E-value=2.2 Score=52.64 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=21.2
Q ss_pred EEeeeccCcceEEEeEEEe---------ceeeEEeecceEEe
Q 004304 489 AVVLEFNHEVKIKKKIKLV---------GYPCKIFKKTALIK 521 (762)
Q Consensus 489 G~Vl~~D~~~~IvKKlkLt---------G~P~KI~KkTAfIK 521 (762)
++|++-+...+-+|.++++ |.-..|++-.+||.
T Consensus 572 ~~~~D~~~n~I~~kD~Vkvi~Gp~~g~~G~v~~i~r~~~F~h 613 (1024)
T KOG1999|consen 572 AVAVDRNGNEIRVKDTVKVIGGPSKGREGEVLHIYRPFVFLH 613 (1024)
T ss_pred heeecccCCeecccceEEEecCCCCCccCccceeecceeeee
Confidence 3666666666666666654 55566777777774
No 12
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=77.84 E-value=0.85 Score=45.59 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=6.9
Q ss_pred cchhhhHHHhh
Q 004304 112 DNDDMENELKL 122 (762)
Q Consensus 112 ~~de~~~~~k~ 122 (762)
..++|.+++..
T Consensus 61 ~e~dFeref~k 71 (170)
T PF04050_consen 61 EEEDFEREFQK 71 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34677777653
No 13
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=76.21 E-value=2.9 Score=51.41 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=5.8
Q ss_pred HhHHHHhhhh
Q 004304 206 EVYESIRDRF 215 (762)
Q Consensus 206 ~~~~~ir~~F 215 (762)
-+++.||.|.
T Consensus 445 ~iI~RIrk~~ 454 (840)
T PF04147_consen 445 TIIQRIRKCY 454 (840)
T ss_pred HHHHHHHHhC
Confidence 4556666653
No 14
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=73.78 E-value=4.7 Score=49.67 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=7.0
Q ss_pred CccccCCCCCCCCCCCC
Q 004304 639 YKPIGRTPRKFNPLVIP 655 (762)
Q Consensus 639 Yk~ieR~~r~fnpl~iP 655 (762)
.+|+..+ +..|+.||
T Consensus 742 r~PL~l~--~~kP~~I~ 756 (840)
T PF04147_consen 742 RRPLQLQ--KHKPIPIK 756 (840)
T ss_pred CCCceec--cCCCcccc
Confidence 5566443 33444443
No 15
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=72.31 E-value=3.7 Score=48.94 Aligned_cols=42 Identities=7% Similarity=0.131 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHhcCCCHHHHHHhcCCCCCcEEEEEEec
Q 004304 322 GLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHD 368 (762)
Q Consensus 322 ~~yd~~K~~~~~q~~~N~~ef~~ld~~~R~~~eG~~~G~YVrI~i~~ 368 (762)
.+-.-++..+..|..|-+.-..-|.. + ++ ...|-|--.+|..
T Consensus 466 ~l~~gi~~Ak~lq~ai~~~~~slie~--~-~I--~~~~~fr~~~l~d 507 (622)
T PF02724_consen 466 LLKKGIELAKSLQRAIFRTGSSLIEK--K-QI--KSLGPFRYCVLKD 507 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--C-cc--ccCCCeEEEEeCC
Confidence 34444555555555554444433321 1 11 2335566666665
No 16
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.15 E-value=4.4 Score=50.29 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=2.7
Q ss_pred CccCCCC
Q 004304 98 NVDNHLS 104 (762)
Q Consensus 98 ~~~~~~s 104 (762)
.|.++.+
T Consensus 950 ~f~t~LD 956 (1010)
T KOG1991|consen 950 LFETPLD 956 (1010)
T ss_pred cccCccc
Confidence 3433333
No 17
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=66.72 E-value=4.7 Score=48.09 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhHHHhc
Q 004304 324 VDQMKEEIEFRKQMNIAELN 343 (762)
Q Consensus 324 yd~~K~~~~~q~~~N~~ef~ 343 (762)
.+.++.-++....+.++-|.
T Consensus 464 ~~~l~~gi~~Ak~lq~ai~~ 483 (622)
T PF02724_consen 464 IDLLKKGIELAKSLQRAIFR 483 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666554
No 18
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=64.83 E-value=29 Score=32.69 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=59.2
Q ss_pred eEEEEEEEeeeccCcceEEEeEEEeceeeEEeecceEEecc-CCChhhhccccCCeeeecc---C--ccceeeccccccc
Q 004304 483 FRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDM-FTSDLEVAQCEGKEVRTVS---G--IRGQVKKAAKEEI 556 (762)
Q Consensus 483 frI~ATG~Vl~~D~~~~IvKKlkLtG~P~KI~KkTAfIK~M-F~s~lEV~~Fkga~LrTks---G--iRG~IKkaLgt~~ 556 (762)
-|..+-|++++.--+.. + +|-++++||-- -.|++|...|.|-.+-=++ | +.|.|...-|.
T Consensus 5 ~r~~ikgv~lsyrR~k~-------~-----q~P~~~liKi~gv~s~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~HGn-- 70 (100)
T COG2451 5 HRLRIKGVVLSYRRSKR-------T-----QHPNVSLIKIEGVDSPEEAQFYLGKRVCYKYRSSGRVIKGKVVRTHGN-- 70 (100)
T ss_pred ceEEEeeEEEEEEeccc-------c-----cCCceEEEEEecCCCHHHHHhhhccEEEEEeCCCCcEEEEEEEEecCC--
Confidence 35566666665433322 2 34567888877 8999999999886654443 4 37888888777
Q ss_pred cCCCCCCCCCCCCceeEeeeccccc---cccEEEEecce
Q 004304 557 GNQPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGWA 592 (762)
Q Consensus 557 ~~~~~~~~~~~phG~fRatFedkIl---~sDiVfLrlwk 592 (762)
.|..||.|+..+- ..+.|++.||.
T Consensus 71 ------------sGaVrarF~~~LP~qa~G~~v~v~ly~ 97 (100)
T COG2451 71 ------------SGAVRARFERNLPGQALGTSVEVKLYP 97 (100)
T ss_pred ------------cceEEEEecCCCCchhcCcEEEEEEcc
Confidence 8999999999874 45777777764
No 19
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=60.13 E-value=1.5e+02 Score=33.53 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=67.3
Q ss_pred hcCCCCCcEEEEEEe---cCchhhhhccCCCCceeEeecccccceeeEEEEEEEec-Cc----ccccccccCCcEEEEEe
Q 004304 353 LEGFRTGTYLRMEIH---DVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH-RW----WHKKVLKSRDPIIVSIG 424 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~---~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRh-rw----~~~kiLKSkDpLi~siG 424 (762)
++.+.||..|.|.|. ++...-+.. ...|.--+-.+.-..-=.+++.+-.| .| +++.+|+..-++++.+|
T Consensus 284 ~~~a~~G~~v~i~l~~~~~i~~~~i~~---G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~ 360 (411)
T PRK04000 284 VEEARPGGLVGVGTKLDPSLTKADALA---GSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVG 360 (411)
T ss_pred CCEEcCCCEEEEEeccCCCCCHHHccC---ccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEe
Confidence 445789999999885 443322221 11111111111111111234444444 23 13578999999999999
Q ss_pred eeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecC-CCCccEEEEEeccCCCCCeEEEEEEEe
Q 004304 425 WRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLSNNQASFRIAATAVV 491 (762)
Q Consensus 425 wRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~-~p~tgvlafq~~~~~~~~frI~ATG~V 491 (762)
-.+-.+.-..- . +..|...+|-|++ +++..|+..+.. ....||+++|.+
T Consensus 361 t~~~~~~i~~i-~--------------~~~~~~~l~~p~~~~~g~r~~~~~~~---~~~~~~~~~~~~ 410 (411)
T PRK04000 361 TATTVGVVTSA-R--------------KDEAEVKLKRPVCAEEGDRVAISRRV---GGRWRLIGYGII 410 (411)
T ss_pred ccEEEEEEEEc-C--------------CcEEEEEECCcEecCCCCEEEEEEec---CCcEEEEEEEEe
Confidence 87654433222 1 1256777899974 556788876654 357899999975
No 20
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=60.08 E-value=14 Score=47.27 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=20.0
Q ss_pred cccCCCCccCCCCCCccccccchhhhHHHhhhhhhhh-hhhhhhhhhcc
Q 004304 92 EDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLR-RCANLIQLVYG 139 (762)
Q Consensus 92 ~~~~~~~~~~~~ss~l~e~~~~de~~~~~k~~es~~~-R~~~l~~lvY~ 139 (762)
++|+..+.++.++- ..+.-+.+..++..+-..++.. +...+.++.|+
T Consensus 1389 e~d~e~g~dg~~~~-~~~~~e~~~~~~~~er~~qs~~~~~~fi~~y~fd 1436 (1640)
T KOG0262|consen 1389 EDDEEVGLDGTPEP-EEEDQEGQPEVNAVERREQSVKKRHDFISRYTFD 1436 (1640)
T ss_pred cchhhcccCCCCCc-ccccccCCchhhHHHHHHHHHHHHHHHhhhhccc
Confidence 33444555554442 2222233333333333333333 33356677775
No 21
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=59.33 E-value=9.1 Score=41.11 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=3.2
Q ss_pred CCccchhe
Q 004304 26 DEDSFVER 33 (762)
Q Consensus 26 ~~d~l~~~ 33 (762)
+.|.-|+|
T Consensus 50 tdD~kQet 57 (287)
T smart00017 50 TDDFKQET 57 (287)
T ss_pred cccccccc
Confidence 33334444
No 22
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=58.68 E-value=1.4e+02 Score=33.79 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=67.1
Q ss_pred hcCCCCCcEEEEEEe---cCchhhhhccCCCCceeEeecccccceeeEEEEEEEec-----CcccccccccCCcEEEEEe
Q 004304 353 LEGFRTGTYLRMEIH---DVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH-----RWWHKKVLKSRDPIIVSIG 424 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~---~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRh-----rw~~~kiLKSkDpLi~siG 424 (762)
+..+.||..|-|.|. ++...-+.. ...|.-.+-.|.-...=-+++.+-.| .|++..+|+....+++.+|
T Consensus 279 ~~~a~~G~~v~i~l~~~~~i~~~dv~~---G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~g 355 (406)
T TIGR03680 279 VEEARPGGLVGVGTKLDPALTKADALA---GQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVG 355 (406)
T ss_pred CCEEcCCCEEEEeeccCCCCCHHHccc---ccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEc
Confidence 345789999999884 443332221 11111111111111100123333333 2223579999999999999
Q ss_pred eeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecC-CCCccEEEEEeccCCCCCeEEEEEEEe
Q 004304 425 WRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLSNNQASFRIAATAVV 491 (762)
Q Consensus 425 wRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~-~p~tgvlafq~~~~~~~~frI~ATG~V 491 (762)
-.+-...-.. +. + ..|...++-|++ +++..|+.++..+ ..+||+++|.|
T Consensus 356 t~~~~~~v~~-~~--~------------~~~~l~l~~p~~~~~g~r~~~~~~~~---~~~~~~g~g~~ 405 (406)
T TIGR03680 356 TATTVGVVTS-AR--K------------DEIEVKLKRPVCAEEGDRVAISRRVG---GRWRLIGYGII 405 (406)
T ss_pred cceEEEEEEE-cC--C------------cEEEEEECCcEEcCCCCEEEEEEecC---CceEEEEEEEe
Confidence 7654443332 21 1 236666888874 4578888888763 67999999986
No 23
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=55.85 E-value=5.4 Score=42.54 Aligned_cols=7 Identities=0% Similarity=-0.263 Sum_probs=4.0
Q ss_pred hhhcccc
Q 004304 146 ETLSKEV 152 (762)
Q Consensus 146 ~~~~~~~ 152 (762)
.+-++|.
T Consensus 199 ~~kr~W~ 205 (244)
T PF04889_consen 199 KVKRRWD 205 (244)
T ss_pred ccccCCc
Confidence 4555675
No 24
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=54.89 E-value=12 Score=33.80 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.8
Q ss_pred ecccCCCCCCCCC
Q 004304 45 AIFGYGVDSGDRK 57 (762)
Q Consensus 45 ~~~~d~~~~~d~~ 57 (762)
..++++.|+++.=
T Consensus 37 ~~lDYdyDSd~EW 49 (77)
T PF12253_consen 37 PNLDYDYDSDDEW 49 (77)
T ss_pred cccceecCCcccc
Confidence 4666666665544
No 25
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=52.91 E-value=7 Score=41.75 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=3.1
Q ss_pred CCCCcc
Q 004304 163 EDEFFK 168 (762)
Q Consensus 163 ~~~fFk 168 (762)
++-.|+
T Consensus 206 ddvvFk 211 (244)
T PF04889_consen 206 DDVVFK 211 (244)
T ss_pred cccccc
Confidence 334676
No 26
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=52.03 E-value=87 Score=27.84 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=45.4
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEE--eecCCCCccEEEEEeccCCCCCeEEEE
Q 004304 410 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAA 487 (762)
Q Consensus 410 ~kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~Atfy--GPi~~p~tgvlafq~~~~~~~~frI~A 487 (762)
+.+|++...++|++|-..-...-. .. + + -.+.+++..|.|.+. -|++.-+.+-++++..+ +.+|
T Consensus 21 ~~~i~~g~~~~~~~~t~~~~~~i~-~~-~--~----~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~~------~tvg 86 (93)
T cd03706 21 HKPFVSNFQPQMFSLTWDCAARID-LP-P--G----KEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDGN------RTIG 86 (93)
T ss_pred CccccCCCeeEEEeccceEEEEEE-CC-C--C----CcEeCCCCEEEEEEEECCcEEEeeCCEEEEEECC------EEEE
Confidence 368999999999988755222111 11 1 1 234567888888888 88864444555555431 7999
Q ss_pred EEEeeec
Q 004304 488 TAVVLEF 494 (762)
Q Consensus 488 TG~Vl~~ 494 (762)
.|.|+++
T Consensus 87 ~G~V~~~ 93 (93)
T cd03706 87 TGLVTDT 93 (93)
T ss_pred EEEEEeC
Confidence 9998763
No 27
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=51.37 E-value=5 Score=48.74 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=0.0
Q ss_pred eeeccCcceEE
Q 004304 491 VLEFNHEVKIK 501 (762)
Q Consensus 491 Vl~~D~~~~Iv 501 (762)
..-|||.-+||
T Consensus 698 aTQcDpeeviv 708 (713)
T PF03344_consen 698 ATQCDPEEVIV 708 (713)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 35567776665
No 28
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.15 E-value=17 Score=38.50 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=2.6
Q ss_pred CCcEEE
Q 004304 358 TGTYLR 363 (762)
Q Consensus 358 ~G~YVr 363 (762)
.|-+||
T Consensus 230 ~GP~ir 235 (240)
T PF05764_consen 230 TGPVIR 235 (240)
T ss_pred CCCeEE
Confidence 344444
No 29
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=48.89 E-value=19 Score=40.28 Aligned_cols=6 Identities=17% Similarity=0.983 Sum_probs=2.7
Q ss_pred eeecCC
Q 004304 34 VEFNDG 39 (762)
Q Consensus 34 ~~~~~g 39 (762)
|....|
T Consensus 186 I~WK~G 191 (337)
T PTZ00007 186 IDWKQG 191 (337)
T ss_pred ceeeCC
Confidence 444444
No 30
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=44.91 E-value=33 Score=32.18 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=36.7
Q ss_pred eecceEEecc-CCChhhhccccCCeeeecc------------CccceeeccccccccCCCCCCCCCCCCceeEeeecccc
Q 004304 514 FKKTALIKDM-FTSDLEVAQCEGKEVRTVS------------GIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 580 (762)
Q Consensus 514 ~KkTAfIK~M-F~s~lEV~~Fkga~LrTks------------GiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkI 580 (762)
+-+||+||-= .++.+|..+|.|-.+-=++ =|-|.|..+-|. .|.+||.|...|
T Consensus 18 ~~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~~~~k~r~iwGkV~r~HGn--------------sGvVrAkF~~nL 83 (95)
T PF01247_consen 18 HPNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKKNGSKGRVIWGKVTRPHGN--------------SGVVRAKFKKNL 83 (95)
T ss_dssp CEEEEEEEESS-STCHHHHTTTT-EEEEEECE-SSSTTECSEEEEEEEEEESTT--------------TTEEEEEESS--
T ss_pred CCCeeEEeecCccCHHHHHhhcCcEEEEEEecccccCCCcEeEEEEEEEeEEcC--------------CCEEEEEeCCCC
Confidence 3456666653 6778888888876654432 247899999887 899999998766
Q ss_pred c
Q 004304 581 L 581 (762)
Q Consensus 581 l 581 (762)
-
T Consensus 84 P 84 (95)
T PF01247_consen 84 P 84 (95)
T ss_dssp S
T ss_pred C
Confidence 4
No 31
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=44.59 E-value=1.7e+02 Score=35.18 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=66.1
Q ss_pred hcCCCCCcEEEEEEec-CchhhhhccCCCCceeEee-cccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee
Q 004304 353 LEGFRTGTYLRMEIHD-VPFEMVEYFDPCHPVLVGG-IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 430 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~-VP~e~ve~fdp~~PlIvgG-Ll~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt 430 (762)
++-..||+.|-|.|.+ +...-+.. +..|+--+ +.+.. .+-+.+. +..+|+...++.|++|-.+-..
T Consensus 228 v~~a~aG~rval~l~g~~~~~~i~r---Gdvl~~~~~~~~~~----~~~~~l~-----~~~~l~~~~~~~~~~gt~~~~~ 295 (614)
T PRK10512 228 TEQAQAGQRIALNIAGDAEKEQINR---GDWLLADAPPEPFT----RVIVELQ-----THTPLTQWQPLHIHHAASHVTG 295 (614)
T ss_pred CCEEeCCCeEEEEecCCCChhhCCC---cCEEeCCCCCccce----eEEEEEc-----CCccCCCCCEEEEEEcccEEEE
Confidence 3446789999999986 66554432 22111111 11111 1222232 2468999999999999765443
Q ss_pred eeeeeeecCCCceeEEeecCCCceEEEEEEeecCCC-CccEEEEEeccCCCCCeEEEEEEEeeeccCcc
Q 004304 431 IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPP-QTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 498 (762)
Q Consensus 431 ~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p-~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~ 498 (762)
.-.+- +...|...+.-|++.. +..|+. +..+ +-+.+|.|.|++++|..
T Consensus 296 ~i~~l---------------~~~~~~l~l~~p~~~~~gdr~il-r~~s----~~~tigGg~Vld~~~~~ 344 (614)
T PRK10512 296 RVSLL---------------EDNLAELVLDTPLWLADNDRLVL-RDIS----ARNTLAGARVVMLNPPR 344 (614)
T ss_pred EEEEc---------------CCeEEEEEECCcccccCCCEEEE-EeCC----CCEEEEEEEEcccCCcc
Confidence 22222 2234555666887555 455555 5543 35799999999987754
No 32
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.38 E-value=21 Score=37.73 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.6
Q ss_pred HHHhhHHHh
Q 004304 334 RKQMNIAEL 342 (762)
Q Consensus 334 q~~~N~~ef 342 (762)
-..+|..-|
T Consensus 197 TE~~N~~SL 205 (240)
T PF05764_consen 197 TEEENLKSL 205 (240)
T ss_pred HHHHHHHHH
Confidence 333444433
No 33
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=44.33 E-value=50 Score=32.26 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=52.9
Q ss_pred CeEEEEEEEeeeccCcceEEEeEEEeceeeEEeecceEEecc-CCChhhhccccCCeeeecc------------Ccccee
Q 004304 482 SFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDM-FTSDLEVAQCEGKEVRTVS------------GIRGQV 548 (762)
Q Consensus 482 ~frI~ATG~Vl~~D~~~~IvKKlkLtG~P~KI~KkTAfIK~M-F~s~lEV~~Fkga~LrTks------------GiRG~I 548 (762)
.-|+-+-|++++.--+. -.-+-|||+||-- .++.+|..+|.|-.+-=+. =|.|.|
T Consensus 17 ~~Rly~kgv~lgYkRg~------------~nQ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGKV 84 (120)
T PTZ00041 17 PVRLYVKAVFLGYKRSK------------VNQYPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKI 84 (120)
T ss_pred CcceEEEEEEEEecccc------------ccCCCceEEEEecCcCChhhhHhhccceEEEEEcCccccCCcceeEEEEEE
Confidence 44666666665432222 1234466666643 6677888888776553331 145899
Q ss_pred eccccccccCCCCCCCCCCCCceeEeeeccccc---cccEEEEecc
Q 004304 549 KKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGW 591 (762)
Q Consensus 549 KkaLgt~~~~~~~~~~~~~phG~fRatFedkIl---~sDiVfLrlw 591 (762)
..+-|. .|.+||.|...|- ++..|.+-||
T Consensus 85 tR~HGn--------------sGvVrAkF~~nLPp~A~G~~VrVmly 116 (120)
T PTZ00041 85 TRPHGN--------------SGVVRARFNKNLPPKAIGSRVRVFLY 116 (120)
T ss_pred EcccCC--------------CcEEEEEeCCCCChHHcCCeEEEEEc
Confidence 998887 8999999998764 3455655444
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=13 Score=44.92 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=7.7
Q ss_pred HhHHHHhhhhccCc
Q 004304 206 EVYESIRDRFVTGD 219 (762)
Q Consensus 206 ~~~~~ir~~Fvtg~ 219 (762)
-+++-|.+|.+.++
T Consensus 476 pvL~~ll~~llD~N 489 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSN 489 (885)
T ss_pred HHHHHHHHHHhccc
Confidence 34555566666554
No 35
>CHL00071 tufA elongation factor Tu
Probab=40.31 E-value=3.6e+02 Score=30.48 Aligned_cols=127 Identities=11% Similarity=-0.076 Sum_probs=63.2
Q ss_pred cCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecC--cccccccccCCcEEEEEeeeeeeee
Q 004304 354 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR--WWHKKVLKSRDPIIVSIGWRRFQTI 431 (762)
Q Consensus 354 eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhr--w~~~kiLKSkDpLi~siGwRRFqt~ 431 (762)
+-+.+|..|.|.|.++...-+. .+..|.--+-.+. ...=.+++.+-.|. - ...+|+....++++||-.+-...
T Consensus 277 ~~a~aGd~v~i~l~~i~~~~i~---~G~vl~~~~~~~~-~~~f~a~i~~l~~~~~~-~~~~i~~g~~~~~~~gt~~~~~~ 351 (409)
T CHL00071 277 DEGLAGDNVGILLRGIQKEDIE---RGMVLAKPGTITP-HTKFEAQVYILTKEEGG-RHTPFFPGYRPQFYVRTTDVTGK 351 (409)
T ss_pred CEECCCceeEEEEcCCCHHHcC---CeEEEecCCCCCc-ceEEEEEEEEEecccCC-ccccccCCceEEEEEcccEEEEE
Confidence 4467888888888876543322 1211111111111 11112333343432 0 14678888888999998875543
Q ss_pred eeeeeecCCCceeEEeecCCCceEEEEEE--eecCCCCccEEEEEeccCCCCCeEEEEEEEeeec
Q 004304 432 PVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEF 494 (762)
Q Consensus 432 PIyS~~d~n~R~R~lKYtpehm~c~Atfy--GPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~ 494 (762)
-..-....+ ..-++...+..|+|.|- .|+++-..+-++++.. -+.+|.|.|+++
T Consensus 352 i~~i~~~~~---~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~------~~tig~G~V~~~ 407 (409)
T CHL00071 352 IESFTADDG---SKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREG------GRTVGAGVVSKI 407 (409)
T ss_pred EEEEcccCC---CCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecC------CeEEEEEEEEEe
Confidence 332211111 11234556666665554 5554433333444321 267888888753
No 36
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=39.64 E-value=20 Score=45.21 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=16.3
Q ss_pred CCCccchheeeecCCeeeeeecccCCCCCCC
Q 004304 25 SDEDSFVERVEFNDGKHFRKAIFGYGVDSGD 55 (762)
Q Consensus 25 s~~d~l~~~~~~~~g~~krk~~~~d~~~~~d 55 (762)
|-+|.+.++.++ .+--+..+....|+..||
T Consensus 870 ~~dd~~~~~~~~-~~e~~e~g~~~~dis~n~ 899 (1128)
T KOG2051|consen 870 SKDDRVVGSSSS-IHEGKEGGAEDKDISSND 899 (1128)
T ss_pred hhcccCcCcccc-cccccccCCCcccccCCC
Confidence 455666664333 454455555556666554
No 37
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=39.63 E-value=3.7e+02 Score=30.32 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=61.4
Q ss_pred cCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee--e
Q 004304 354 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT--I 431 (762)
Q Consensus 354 eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt--~ 431 (762)
+-..+|..|.|.|.++...-+. .+..|.-.+-.+.-.+.=.+++.+-. ++.+|+.....+|+||-.+-.+ .
T Consensus 280 ~~a~aG~~v~i~l~~~~~~~i~---rG~vl~~~~~~~~~~~~f~a~v~~l~----~~~~i~~G~~~~~~~~t~~~~~~i~ 352 (425)
T PRK12317 280 PQAEPGDNIGFNVRGVGKKDIK---RGDVCGHPDNPPTVAEEFTAQIVVLQ----HPSAITVGYTPVFHAHTAQVACTFE 352 (425)
T ss_pred CEECCCCeEEEEECCCCHHHcc---CccEecCCCCCCCcccEEEEEEEEEC----CCCcCCCCCeEEEEEcCcEEEEEEE
Confidence 3456777777777776543222 12211111111111121122444443 3458888899999999665432 3
Q ss_pred eeeeeecCCCce---eEEeecCCCceEEEEEE--eecCC------CCccEEEEEeccCCCCCeEEEEEEEeeeccCc
Q 004304 432 PVYAIEDRSGRH---RMLKYTPEHMHCLATFW--GPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFNHE 497 (762)
Q Consensus 432 PIyS~~d~n~R~---R~lKYtpehm~c~Atfy--GPi~~------p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~ 497 (762)
.|.+.-+.++-. +--++.+.+..+++.|- -|++. +..+=++++.. + +.+|.|.|+++.+.
T Consensus 353 ~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfilr~~-----g-~tv~~G~i~~v~~~ 423 (425)
T PRK12317 353 ELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIRDM-----G-QTIAAGMVIDVKPA 423 (425)
T ss_pred EEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEEEEEC-----C-CeEEEEEEEEeccC
Confidence 344433322111 11124445555444442 33321 12222333321 1 57899999887754
No 38
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=38.70 E-value=86 Score=36.41 Aligned_cols=41 Identities=10% Similarity=0.248 Sum_probs=21.6
Q ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004304 684 AVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAE 726 (762)
Q Consensus 684 avv~~~~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~ 726 (762)
..++.|. ++.+|-.....+++++.+..++++..+++...++
T Consensus 314 ~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~ 354 (429)
T PRK00247 314 RMIITPW--RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKR 354 (429)
T ss_pred cccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555 6667766666666665555444444444333333
No 39
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=37.66 E-value=48 Score=30.77 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=36.2
Q ss_pred ecceEEecc-CCChhhhccccCCeeeec--c--CccceeeccccccccCCCCCCCCCCCCceeEeeeccccc
Q 004304 515 KKTALIKDM-FTSDLEVAQCEGKEVRTV--S--GIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 581 (762)
Q Consensus 515 KkTAfIK~M-F~s~lEV~~Fkga~LrTk--s--GiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl 581 (762)
-|||+||-- .++.+|..+|.|-.+-=+ . =|.|.|..+-|. .|.+||.|...|-
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yvyk~grviwGKItR~HGn--------------sGvVrAkF~~nLP 76 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWKDPTGNKYVGKIVRVHGN--------------RGEVRARFKPGLP 76 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCC--------------CceEEEEECCCCC
Confidence 355555543 566777777766544322 2 357999999887 7999999987653
No 40
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=37.22 E-value=1.5e+02 Score=25.82 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=39.3
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEE---eecCCCCccEEEEEeccCCCCCeEEE
Q 004304 410 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW---GPLAPPQTGVVAVQNLSNNQASFRIA 486 (762)
Q Consensus 410 ~kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~Atfy---GPi~~p~tgvlafq~~~~~~~~frI~ 486 (762)
+.+|.+.-..++++|-.+-...-. .-. . ++...+..+.+.+. .|++.-+.+-++++. + +.+
T Consensus 16 ~~~i~~Gy~~~l~~~t~~~~~~i~--~i~--~-----~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~------g-~tv 79 (87)
T cd03708 16 PTTISPGYQATVHIGSIRQTARIV--SID--K-----DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE------G-RTK 79 (87)
T ss_pred CCcccCCCEeEEEEcCCEEEEEEE--ecc--H-----hhccCCCeEEEEEEECCCCcEEccCCeEEEEC------C-CcE
Confidence 467888887777777665332111 101 0 45566666666655 666433344455532 3 689
Q ss_pred EEEEeee
Q 004304 487 ATAVVLE 493 (762)
Q Consensus 487 ATG~Vl~ 493 (762)
|.|.|++
T Consensus 80 a~G~I~~ 86 (87)
T cd03708 80 GVGEVTK 86 (87)
T ss_pred EEEEEEE
Confidence 9999865
No 41
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=36.20 E-value=4.6e+02 Score=29.68 Aligned_cols=127 Identities=10% Similarity=0.119 Sum_probs=60.0
Q ss_pred cCCCCCcEEEEEEecCchhhhhccCCCCceeEeec--ccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee-
Q 004304 354 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI--GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT- 430 (762)
Q Consensus 354 eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGL--l~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt- 430 (762)
+...+|..|.|.|.+++..-+.. +. |++.. .+.-.+-=..++.+-. +..+|+..-..+|+||..|=.+
T Consensus 282 ~~a~aG~~v~i~l~~i~~~~i~r---G~--vl~~~~~~~~~~~~f~a~v~~l~----~~~~i~~g~~~~~~~~t~~~~~~ 352 (426)
T TIGR00483 282 EQAEPGDNIGFNVRGVSKKDIRR---GD--VCGHPDNPPKVAKEFTAQIVVLQ----HPGAITVGYTPVFHCHTAQIACR 352 (426)
T ss_pred CEEcCCCEEEEEECCCChhhccc---ce--EEecCCCCCceeeEEEEEEEEEC----CCCccCCCCeEEEEecCcEEEEE
Confidence 34667888888888776543331 11 11111 0100110112233322 2357777666669999887543
Q ss_pred -eeeeeeecCCCcee---EEeecCCCceEEEEEE--eecCC------CCccEEEEEeccCCCCCeEEEEEEEeeecc
Q 004304 431 -IPVYAIEDRSGRHR---MLKYTPEHMHCLATFW--GPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFN 495 (762)
Q Consensus 431 -~PIyS~~d~n~R~R---~lKYtpehm~c~Atfy--GPi~~------p~tgvlafq~~~~~~~~frI~ATG~Vl~~D 495 (762)
..|.+.-+.++-.. --+++..+..+.+.|- -||+. +..+=++++.. -+.+|.|.|+.+.
T Consensus 353 i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~lr~~------g~tv~~G~v~~~~ 423 (426)
T TIGR00483 353 FDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDM------GQTVAAGMIIDVD 423 (426)
T ss_pred EEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEEEEC------CCEEEEEEEEEee
Confidence 44555444322111 1235555555555543 23221 11222222221 1578889888764
No 42
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=35.49 E-value=2.1e+02 Score=35.19 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=13.1
Q ss_pred CCCCCCCCCCHhHHhhCCCCCC
Q 004304 646 PRKFNPLVIPKSLQAALPFESK 667 (762)
Q Consensus 646 ~r~fnpl~iPk~Lq~~LPfksk 667 (762)
.+.|.+-.-|+.--..+||-++
T Consensus 221 ~~~~s~q~p~k~~s~~~pk~tk 242 (811)
T KOG4364|consen 221 IRSFSDQMPQKNSSEMAPKDTK 242 (811)
T ss_pred cCcccccccccCCCcCCCCCCC
Confidence 3556665555555566777654
No 43
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=33.93 E-value=4.6e+02 Score=30.64 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=41.4
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecC-CCCccEEEEEeccCCCCCeEEEEE
Q 004304 410 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLSNNQASFRIAAT 488 (762)
Q Consensus 410 ~kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~-~p~tgvlafq~~~~~~~~frI~AT 488 (762)
..+|+....+.|++|-.+-...-. .+.. +. .|...+.-|++ .++..|+.-...+ +..|+++.
T Consensus 384 ~~~l~~g~~~~l~~gt~~~~~~i~-~i~~-~~------------~~~l~l~~P~~~~~gdr~ilr~~~~---~~~~tig~ 446 (460)
T PTZ00327 384 VAKLKKGESLMINIGSTTTGGRVV-GIKD-DG------------IAKLELTTPVCTSVGEKIALSRRVD---KHWRLIGW 446 (460)
T ss_pred CcccCCCCEEEEEecccEEEEEEE-EeCC-Ce------------EEEEEECccEeccCCCEEEEEeccC---CCcEEEEE
Confidence 479999999999999876443332 2221 11 23334556763 4556666655432 34789999
Q ss_pred EEeee
Q 004304 489 AVVLE 493 (762)
Q Consensus 489 G~Vl~ 493 (762)
|+|..
T Consensus 447 G~i~~ 451 (460)
T PTZ00327 447 GTIRK 451 (460)
T ss_pred EEEcC
Confidence 98874
No 44
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=33.80 E-value=28 Score=43.61 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=8.7
Q ss_pred cEEEEEeeeeeeee
Q 004304 418 PIIVSIGWRRFQTI 431 (762)
Q Consensus 418 pLi~siGwRRFqt~ 431 (762)
-.|++++---||.+
T Consensus 536 gvI~rle~e~~~vl 549 (1024)
T KOG1999|consen 536 GVIVRLERETFQVL 549 (1024)
T ss_pred EEEEEecchheeee
Confidence 44777777666643
No 45
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=33.00 E-value=50 Score=35.78 Aligned_cols=7 Identities=14% Similarity=-0.197 Sum_probs=3.4
Q ss_pred chheeee
Q 004304 30 FVERVEF 36 (762)
Q Consensus 30 l~~~~~~ 36 (762)
||.+|++
T Consensus 41 pQn~vSS 47 (287)
T smart00017 41 PQNAVSS 47 (287)
T ss_pred ccccccc
Confidence 3555544
No 46
>PLN03126 Elongation factor Tu; Provisional
Probab=32.18 E-value=5.5e+02 Score=30.14 Aligned_cols=75 Identities=11% Similarity=-0.061 Sum_probs=46.0
Q ss_pred cccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEE--EeecCCCCccEEEEEeccCCCCCeEEEEE
Q 004304 411 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATF--WGPLAPPQTGVVAVQNLSNNQASFRIAAT 488 (762)
Q Consensus 411 kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~Atf--yGPi~~p~tgvlafq~~~~~~~~frI~AT 488 (762)
.+|+..-.++++||--+-... |-.+....+ .--+++..+..|++.| -.|++.-+.+-++|+.. -+.+|-
T Consensus 400 ~~I~~G~~~~lhigt~~~~~~-I~~i~~~~~--~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~------~~Tva~ 470 (478)
T PLN03126 400 SPFFAGYRPQFYMRTTDVTGK-VTSIMNDKD--EESKMVMPGDRVKMVVELIVPVACEQGMRFAIREG------GKTVGA 470 (478)
T ss_pred ccccCCcEEEEEEEecEEEEE-EEEEecccC--CCccEeCCCCEEEEEEEECCeEEEccCCEEEEecC------CceEEE
Confidence 478888888999997664433 222211111 1124566676666555 47887666666667653 268899
Q ss_pred EEeeec
Q 004304 489 AVVLEF 494 (762)
Q Consensus 489 G~Vl~~ 494 (762)
|.|+++
T Consensus 471 G~V~~v 476 (478)
T PLN03126 471 GVIQSI 476 (478)
T ss_pred EEEEEe
Confidence 988764
No 47
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=31.67 E-value=5.7e+02 Score=26.21 Aligned_cols=72 Identities=18% Similarity=0.362 Sum_probs=37.6
Q ss_pred CccccccccccCCchh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004304 676 RPLLENRRAVVMEPHE-----RKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQ 749 (762)
Q Consensus 676 ~~~~~~~ravv~~~~E-----kk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~e~~~~~~~ke~~k~~~r~~ 749 (762)
+.+|+.-.+++++|.. ++...-+..=..|...-..|++.++.++. ..+.....|+.|..++++.-.+.|-..
T Consensus 30 ~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~e--rr~~EE~~EE~Rl~rere~~q~~~E~E 106 (157)
T PF15236_consen 30 KTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEE--RRRREEEEEEERLAREREELQRQFEEE 106 (157)
T ss_pred ccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777765 33333333334555555555554444332 333344455566666666666666443
No 48
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=30.07 E-value=9.1e+02 Score=27.94 Aligned_cols=129 Identities=14% Similarity=0.094 Sum_probs=63.3
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEee-ccc-ccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG-IGL-GEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 430 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgG-Ll~-~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt 430 (762)
++-..+|..|.|.|.++...-+. +.. +++.. -.| ...+-=..++.+-. ++.+|+..-..+++||..+-..
T Consensus 287 ~~~a~aG~~v~i~L~~i~~~~v~---rG~-vl~~~~~~p~~~~~~f~a~i~~l~----~~~~i~~G~~~vl~~~t~~~~~ 358 (446)
T PTZ00141 287 LAEAVPGDNVGFNVKNVSVKDIK---RGY-VASDSKNDPAKECADFTAQVIVLN----HPGQIKNGYTPVLDCHTAHIAC 358 (446)
T ss_pred cCEECCCCEEEEEECCCCHHHcC---Cce-EEecCCCCCCccceEEEEEEEEEC----CCCccCCCCeEEEEEeceEEEE
Confidence 34467888888888876544332 121 11111 011 11111111222222 2357877777779999876543
Q ss_pred --eeeeeeecCCC-c-e-eEEeecCCCceEEEEEE--eecCCC------CccEEEEEeccCCCCCeEEEEEEEeeecc
Q 004304 431 --IPVYAIEDRSG-R-H-RMLKYTPEHMHCLATFW--GPLAPP------QTGVVAVQNLSNNQASFRIAATAVVLEFN 495 (762)
Q Consensus 431 --~PIyS~~d~n~-R-~-R~lKYtpehm~c~Atfy--GPi~~p------~tgvlafq~~~~~~~~frI~ATG~Vl~~D 495 (762)
..|.+.-+.++ . . +.-++++.+..+++.|- -||+.- ..+=++++.. -..+|.|.|+.+.
T Consensus 359 ~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~lgrfilrd~------g~tva~G~I~~v~ 430 (446)
T PTZ00141 359 KFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAVRDM------KQTVAVGVIKSVE 430 (446)
T ss_pred EEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecccCCCCccEEEEEC------CCEEEEEEEEEEe
Confidence 44555444321 1 1 12346666766666653 343221 2222333221 1478899887765
No 49
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=29.96 E-value=37 Score=39.76 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=58.7
Q ss_pred cccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeee-eeeeeecCCCceeEEeecCC-----CceEEEEEEe
Q 004304 388 IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTI-PVYAIEDRSGRHRMLKYTPE-----HMHCLATFWG 461 (762)
Q Consensus 388 Ll~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~-PIyS~~d~n~R~R~lKYtpe-----hm~c~AtfyG 461 (762)
|-.++-.|+||++---+--| ...=+.|..-++|.+-=|---+. --|.-+-..++..|+-|+-+ .|||.|.+ |
T Consensus 147 l~~~~~dftvin~p~f~~~~-~~~g~~Se~~i~~n~~~~~~lIggT~YaGEMKK~~fs~mnylLP~~~i~~MHcsANv-G 224 (529)
T COG1866 147 LSTFKPDFTVINAPSFKADP-KRDGLRSETFVAFNFTERIVLIGGTWYAGEMKKGIFSVMNYLLPLKGILSMHCSANV-G 224 (529)
T ss_pred hccCCCCeEEEeCCcCCCCh-hhcccccccEEEEecccceeeeeccchhhhhhhhHHHHhhccccccccccceecccc-C
Confidence 55667788999977777777 77777777777766432211010 11222223356688888644 38999965 5
Q ss_pred ecCCCCccEEEEEeccCCCCCeEEEEEEE-eeeccCcc
Q 004304 462 PLAPPQTGVVAVQNLSNNQASFRIAATAV-VLEFNHEV 498 (762)
Q Consensus 462 Pi~~p~tgvlafq~~~~~~~~frI~ATG~-Vl~~D~~~ 498 (762)
|. +-..|.| -|++||. -|+.||.|
T Consensus 225 ~~---gdvalFF----------GLSGTGKTTLSaDp~R 249 (529)
T COG1866 225 EK---GDVALFF----------GLSGTGKTTLSADPHR 249 (529)
T ss_pred cC---CCeEEEE----------eccCCCcceeccCCcc
Confidence 54 4444444 4677774 47889987
No 50
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.55 E-value=56 Score=43.68 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=6.3
Q ss_pred cccEEEEecce
Q 004304 582 MSDIVFMRGWA 592 (762)
Q Consensus 582 ~sDiVfLrlwk 592 (762)
.+|||-+.+++
T Consensus 847 PgDIIGFNC~k 857 (2849)
T PTZ00415 847 ENDIIGFNCLE 857 (2849)
T ss_pred CCCeEEEeCCc
Confidence 34666666654
No 51
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=26.74 E-value=7.2e+02 Score=27.89 Aligned_cols=70 Identities=13% Similarity=-0.035 Sum_probs=40.2
Q ss_pred cccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEE--eecCCCCccEEEEEeccCCCCCeEEEEE
Q 004304 411 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAAT 488 (762)
Q Consensus 411 kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~Atfy--GPi~~p~tgvlafq~~~~~~~~frI~AT 488 (762)
.+|+...++++++|--|-...-.+. . + -.++.++..|+|.|. -|++.-+.+=++|+.. -+.+|.
T Consensus 321 ~~i~~g~~~~l~~~t~~~~~~i~~~--~-~-----~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~------g~tv~~ 386 (394)
T TIGR00485 321 TPFFSGYRPQFYFRTTDVTGSITLP--E-G-----VEMVMPGDNVKMTVELISPIALEQGMRFAIREG------GRTVGA 386 (394)
T ss_pred CccccCceEEEEEecceEEEEEEec--C-C-----cceeCCCCEEEEEEEECceEEEeECCEEEEecC------CcEEEE
Confidence 5777778888888866543332211 0 1 134556677777666 6665444444444432 267888
Q ss_pred EEeeec
Q 004304 489 AVVLEF 494 (762)
Q Consensus 489 G~Vl~~ 494 (762)
|.|+++
T Consensus 387 G~V~~v 392 (394)
T TIGR00485 387 GVVSKI 392 (394)
T ss_pred EEEEEe
Confidence 888764
No 52
>PRK12735 elongation factor Tu; Reviewed
Probab=26.54 E-value=6.5e+02 Score=28.37 Aligned_cols=124 Identities=11% Similarity=-0.051 Sum_probs=62.6
Q ss_pred HhcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCccc--ccccccCCcEEEEEeeeeee
Q 004304 352 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWH--KKVLKSRDPIIVSIGWRRFQ 429 (762)
Q Consensus 352 ~~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~--~kiLKSkDpLi~siGwRRFq 429 (762)
.++-..+|..|.|.|.++...-+. ++..|.-.+-++.=..+ -+++.+-.|.- . ..+|+.....++++|--+-.
T Consensus 267 ~v~~a~aGd~v~l~L~~i~~~~i~---rG~vl~~~~~~~~~~~f-~a~i~vl~~~~-~~~~~~i~~g~~~~l~~~t~~~~ 341 (396)
T PRK12735 267 LLDEGQAGDNVGVLLRGTKREDVE---RGQVLAKPGSIKPHTKF-EAEVYVLSKEE-GGRHTPFFNGYRPQFYFRTTDVT 341 (396)
T ss_pred EeCEECCCCEEEEEeCCCcHHHCC---cceEEEcCCCCCcceEE-EEEEEEEeccc-CCCCCcccCCCeeEEEeccceEE
Confidence 344578899999999887554332 22222111111111111 23334434321 1 35788888888999988754
Q ss_pred eeeeeeeecCCCceeEEeecCCCceEEEEEE--eecCCCCccEEEEEeccCCCCCeEEEEEEEeeec
Q 004304 430 TIPVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEF 494 (762)
Q Consensus 430 t~PIyS~~d~n~R~R~lKYtpehm~c~Atfy--GPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~ 494 (762)
..-.. . + +. .++..+..|+|.|. .|++.-..+=++|+.. -+.+|.|.|+.+
T Consensus 342 ~~i~~-~-~---~~---~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~------g~tv~~G~V~~v 394 (396)
T PRK12735 342 GTIEL-P-E---GV---EMVMPGDNVKMTVELIAPIAMEEGLRFAIREG------GRTVGAGVVAKI 394 (396)
T ss_pred EEEEc-c-C---CC---ceeCCCCEEEEEEEECceEEEeECCEEEEEcC------CcEEEEEEEEEe
Confidence 33211 1 1 11 23444555555443 5654332234444431 268888988764
No 53
>PRK00049 elongation factor Tu; Reviewed
Probab=25.70 E-value=1e+03 Score=26.94 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=62.9
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEe-ecccccceeeEEEEEEEecCccc--ccccccCCcEEEEEeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVG-GIGLGEQNVGYMQVRLKRHRWWH--KKVLKSRDPIIVSIGWRRFQ 429 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvg-GLl~~E~k~gvv~~riKRhrw~~--~kiLKSkDpLi~siGwRRFq 429 (762)
++-..+|..|.|.|.++...-+. .+. ++.. +-.+.=..+ .+++.+-.|.- . ..+|++.-..+++||--+-.
T Consensus 268 ~~~a~~Gd~v~l~l~~i~~~~i~---~G~-vl~~~~~~~~~~~f-~a~i~vl~~~~-~g~~~~i~~g~~~~~~~~t~~~~ 341 (396)
T PRK00049 268 LDEGQAGDNVGALLRGIKREDVE---RGQ-VLAKPGSITPHTKF-EAEVYVLSKEE-GGRHTPFFNGYRPQFYFRTTDVT 341 (396)
T ss_pred eCEEcCCCEEEEEeCCCCHHHCC---cce-EEecCCCCCcceEE-EEEEEEEecCc-CCCCCcccCCCEEEEEEecCcEE
Confidence 34467899999998887543322 221 1111 111111121 23444444421 1 35788888888999888743
Q ss_pred eeeeeeeecCCCceeEEeecCCCceEEEEEE--eecCCCCccEEEEEeccCCCCCeEEEEEEEeeec
Q 004304 430 TIPVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEF 494 (762)
Q Consensus 430 t~PIyS~~d~n~R~R~lKYtpehm~c~Atfy--GPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~ 494 (762)
..- ...+ + -+|+..+..+++.|- .|++.-+.+=++++.. -+.+|-|.|+++
T Consensus 342 ~~i--~l~~-~-----~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~------g~t~~~G~V~~v 394 (396)
T PRK00049 342 GVI--ELPE-G-----VEMVMPGDNVEMTVELIAPIAMEEGLRFAIREG------GRTVGAGVVTKI 394 (396)
T ss_pred EEE--EecC-C-----CcccCCCCEEEEEEEECceEEEeeCCEEEEecC------CcEEEEEEEEEe
Confidence 332 1111 1 135556666666554 5554333333444431 257888888764
No 54
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=24.91 E-value=32 Score=42.07 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=15.5
Q ss_pred cccCCchhhhHHHHHHHHHH
Q 004304 684 AVVMEPHERKVHVLFQQLQL 703 (762)
Q Consensus 684 avv~~~~Ekk~~~l~q~l~t 703 (762)
-.+++|+++-+..++.....
T Consensus 752 ~l~l~~~~~~v~~~ftr~~k 771 (822)
T KOG2141|consen 752 GLILEPEEKDVFQLFTRVAK 771 (822)
T ss_pred HHHhcchHHHHHHHHHHHhc
Confidence 55889999988888877653
No 55
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=24.89 E-value=38 Score=34.00 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=8.1
Q ss_pred CccchheeeecCCeee
Q 004304 27 EDSFVERVEFNDGKHF 42 (762)
Q Consensus 27 ~d~l~~~~~~~~g~~k 42 (762)
...+-..+-+.+|.++
T Consensus 24 ~~~~~~~~vey~G~~r 39 (149)
T PF08595_consen 24 GPSLYEKVVEYNGSER 39 (149)
T ss_pred CccccceeeEECCeee
Confidence 3344445555577543
No 56
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=24.59 E-value=62 Score=36.54 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.9
Q ss_pred hhhhhhcc
Q 004304 132 NLIQLVYG 139 (762)
Q Consensus 132 ~l~~lvY~ 139 (762)
|++=-.|+
T Consensus 305 nvVvCqyD 312 (348)
T KOG2652|consen 305 NVVVCQYD 312 (348)
T ss_pred eeEEEeee
Confidence 44444554
No 57
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.42 E-value=48 Score=40.52 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=4.7
Q ss_pred Ccccccccc
Q 004304 597 PRFYNPLTT 605 (762)
Q Consensus 597 ~~fynpvt~ 605 (762)
..||+|+..
T Consensus 786 ~~f~~pWc~ 794 (885)
T KOG2023|consen 786 DSFMRPWCT 794 (885)
T ss_pred HHHHHHHHH
Confidence 456666444
No 58
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=23.20 E-value=41 Score=33.72 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=8.1
Q ss_pred Hhhhhhhhhhhhhhhhhh
Q 004304 120 LKLTKSSLRRCANLIQLV 137 (762)
Q Consensus 120 ~k~~es~~~R~~~l~~lv 137 (762)
+..+.-.+|+...|.+.+
T Consensus 129 iekEq~~l~~~~kLl~vl 146 (149)
T PF08595_consen 129 IEKEQNSLWRLKKLLEVL 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455444444433
No 59
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=22.98 E-value=2.7e+02 Score=24.32 Aligned_cols=64 Identities=19% Similarity=0.410 Sum_probs=37.9
Q ss_pred cCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecC------cccccccccCCcEEEEEeeee
Q 004304 354 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR------WWHKKVLKSRDPIIVSIGWRR 427 (762)
Q Consensus 354 eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhr------w~~~kiLKSkDpLi~siGwRR 427 (762)
-.+.||+||.|.+. ++-..+. +|. ++...-..-+.+.+.||+++ | -.. |+..|.|-+.--+=+
T Consensus 28 ~~~~pGQ~v~v~~~-~~~~~~~-----R~y---S~~s~~~~~~~~~~~ik~~~~G~~S~~-L~~-l~~Gd~v~i~gP~G~ 96 (99)
T PF00970_consen 28 LDFKPGQFVSVRVP-INGKQVS-----RPY---SPASSPDDKGYLEFAIKRYPNGRVSRY-LHQ-LKPGDEVEIRGPYGN 96 (99)
T ss_dssp -SSTTT-EEEEEEE-ETTEEEE-----EEE---EBCSSTTSSSEEEEEEEECTTSHHHHH-HHT-SCTTSEEEEEEEESS
T ss_pred cccCcceEEEEEEc-cCCccee-----cce---eEeeecCCCCcEEEEEEeccCCHHHHH-HHh-CCCCCEEEEEEcccc
Confidence 46899999999998 3322111 222 22333345568899999972 4 333 777788777655544
Q ss_pred e
Q 004304 428 F 428 (762)
Q Consensus 428 F 428 (762)
|
T Consensus 97 f 97 (99)
T PF00970_consen 97 F 97 (99)
T ss_dssp E
T ss_pred c
Confidence 4
No 60
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=22.15 E-value=8.8e+02 Score=29.11 Aligned_cols=111 Identities=19% Similarity=0.039 Sum_probs=65.7
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP 432 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~P 432 (762)
++-..||+.|.|.|.++..+-+.. + +++++.... .....+.+. ...+|+...++.|++|-.+....-
T Consensus 230 v~~a~aG~rval~L~~i~~~~i~r---G--~~~~~~~~~-~~~~~~~~~-------~~~~l~~~~~~~~~~gt~~~~~~i 296 (581)
T TIGR00475 230 VEIAYAGQRIALNLMDVEPESLKR---G--LLILTPEDP-KLRVVVKFI-------AEVPLLELQPYHIAHGMSVTTGKI 296 (581)
T ss_pred CCEEECCCEEEEEeCCCCHHHcCC---c--eEEcCCCCC-CceEEEEEE-------cCCccCCCCeEEEEEeceEEEEEE
Confidence 445678999999999887665442 2 444332211 111122222 246899999999999998755542
Q ss_pred eeeeecCCCceeEEeecCCCceEEEEEEeecCC-CCccEEEEEeccCCCCCeEEEEEEEeeeccCcc
Q 004304 433 VYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP-PQTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 498 (762)
Q Consensus 433 IyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~-p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~ 498 (762)
.+- +. ..+-..+--|++. .+..|++-. + +-+.++-|.|+++ |.+
T Consensus 297 ~~l-~~--------------~~~~l~l~~P~~~~~gd~~i~r~--~----~~~tiggg~vl~~-~~~ 341 (581)
T TIGR00475 297 SLL-DK--------------GIALLTLDAPLILAKGDKLVLRD--S----SGNFLAGARVLEP-PVR 341 (581)
T ss_pred EEc-cC--------------cEEEEEECCceecCCCCEEEEEe--C----CCEEEeeeEEecC-Ccc
Confidence 221 11 1455556677753 455666644 2 2478888999977 533
No 61
>PRK13035 superantigen-like protein 5; Reviewed
Probab=21.66 E-value=3.9e+02 Score=29.03 Aligned_cols=136 Identities=14% Similarity=0.180 Sum_probs=85.9
Q ss_pred eeeeeeeeeeeeecC------CCceeEEeecCCCceEEEEEEee-------cCCCCccEEEEEeccCCCCCeEEEEEEEe
Q 004304 425 WRRFQTIPVYAIEDR------SGRHRMLKYTPEHMHCLATFWGP-------LAPPQTGVVAVQNLSNNQASFRIAATAVV 491 (762)
Q Consensus 425 wRRFqt~PIyS~~d~------n~R~R~lKYtpehm~c~AtfyGP-------i~~p~tgvlafq~~~~~~~~frI~ATG~V 491 (762)
.++|.|.|-|.-... +.--+++.|.+.......+.+|+ ...++.-|.+++...+ ..-+...+|-|
T Consensus 47 Lk~YYt~ps~e~kNv~gy~~~~~~~~~~~f~~~~~~~~I~L~G~D~~k~k~~~~~~lDVFvV~E~~~--~~~~~ySiGGV 124 (234)
T PRK13035 47 LRDYYSGASKELKNVTGYRYSKGGKHYLIFDKNRKFTRVQIFGKDIERFKARKNPGLDIFVVKEAEN--RNGTVFSYGGV 124 (234)
T ss_pred HHHHccCCCeeEEcceEEEecCCCeEEEEEccCceEEEEEEEcCchHhhccCCCCCccEEEEecCCC--ccccEEEeCCE
Confidence 356777777766541 23357789999999999999998 3456667777776644 33456778888
Q ss_pred eeccCcc---------eEEEeE-----EEeceeeEEeecceEEeccCCChhhh--ccc--cCCeeeeccCccceeecccc
Q 004304 492 LEFNHEV---------KIKKKI-----KLVGYPCKIFKKTALIKDMFTSDLEV--AQC--EGKEVRTVSGIRGQVKKAAK 553 (762)
Q Consensus 492 l~~D~~~---------~IvKKl-----kLtG~P~KI~KkTAfIK~MF~s~lEV--~~F--kga~LrTksGiRG~IKkaLg 553 (762)
...+... .++++. --.+.||+|+|....++- +|+ +++ +.-.|+-..+-.|.|+=-.+
T Consensus 125 TktN~~~~~d~~~~~~l~i~k~~~~~~~~~~~~~~I~K~~vTlkE-----LD~KlR~~Li~~~~LY~~~~~~G~I~~~~~ 199 (234)
T PRK13035 125 TKKNQDAYYDYINAPRFQIKRDEGDGIATYGRVHYIYKEEISLKE-----LDFKLRQYLIQNFDLYKKFPKDSKIKVIMK 199 (234)
T ss_pred EeCCcccccccccCCcEEEEeccCCcceeeccceEeeeceeeHHH-----HHHHHHHHHHHhhccccCCCCceEEEEEeC
Confidence 7766632 223222 235578899999988764 332 111 33345555455899986554
Q ss_pred ccccCCCCCCCCCCCCceeEeeeccccc
Q 004304 554 EEIGNQPKRKGGQPREGIARCTFEDRIL 581 (762)
Q Consensus 554 t~~~~~~~~~~~~~phG~fRatFedkIl 581 (762)
. .+.|-.-+..++.
T Consensus 200 ~--------------~~~~t~DL~KKLq 213 (234)
T PRK13035 200 D--------------GGYYTFELNKKLQ 213 (234)
T ss_pred C--------------CCEEEEEcccccc
Confidence 4 5556666666664
No 62
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=21.49 E-value=1.5e+02 Score=29.44 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecC
Q 004304 355 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR 406 (762)
Q Consensus 355 G~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhr 406 (762)
.++||+||.|.+.. ...+|+.+.+. +.+. +.+.+.|++|.
T Consensus 25 ~~~pGQ~~~l~~~~---------~~~r~ySi~s~-~~~~--~~l~~~v~~~~ 64 (211)
T cd06185 25 AFEPGAHIDVHLPN---------GLVRQYSLCGD-PADR--DRYRIAVLREP 64 (211)
T ss_pred CCCCCceEEEEcCC---------CCceeeeccCC-CCCC--CEEEEEEEecc
Confidence 69999999999864 22467777664 3342 45677777754
No 63
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=21.42 E-value=2.2e+02 Score=28.96 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=40.8
Q ss_pred ccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecCCCCccEEEE
Q 004304 414 KSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV 473 (762)
Q Consensus 414 KSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlaf 473 (762)
.|.=-|-+++|=.||.|.||=+..+.+-..-+|=.++...+..++-..-+.-..+||-++
T Consensus 33 ~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihiv 92 (156)
T PF15627_consen 33 CSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIV 92 (156)
T ss_pred ceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEE
Confidence 344456678888899999999999988888888777776544433334444445555444
No 64
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=20.78 E-value=5.1e+02 Score=32.86 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 004304 696 VLFQQLQLIRNEK 708 (762)
Q Consensus 696 ~l~q~l~ti~~~k 708 (762)
+|-.+|...+.+.
T Consensus 218 ~~qe~La~~qe~e 230 (1064)
T KOG1144|consen 218 AMQEALAKRQEEE 230 (1064)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 65
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=20.56 E-value=84 Score=37.21 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=7.3
Q ss_pred eeeecccCCC
Q 004304 42 FRKAIFGYGV 51 (762)
Q Consensus 42 krk~~~~d~~ 51 (762)
++.++|.+-+
T Consensus 267 ~k~aSf~~~v 276 (507)
T PF11702_consen 267 KKTASFSNEV 276 (507)
T ss_pred cccchhhccc
Confidence 5667887776
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=6e+02 Score=32.26 Aligned_cols=10 Identities=50% Similarity=0.630 Sum_probs=4.8
Q ss_pred eeccCc-ccee
Q 004304 539 RTVSGI-RGQV 548 (762)
Q Consensus 539 rTksGi-RG~I 548 (762)
+|.||- .|+.
T Consensus 206 ktrsG~Lsg~q 216 (1118)
T KOG1029|consen 206 KTRSGYLSGQQ 216 (1118)
T ss_pred cccccccccHH
Confidence 455553 4443
No 67
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=20.06 E-value=4.2e+02 Score=34.26 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=3.2
Q ss_pred EEeccC
Q 004304 519 LIKDMF 524 (762)
Q Consensus 519 fIK~MF 524 (762)
||+.|+
T Consensus 274 LI~~~L 279 (1021)
T PTZ00266 274 LIKNLL 279 (1021)
T ss_pred HHHHHh
Confidence 455555
No 68
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=20.01 E-value=1.9e+02 Score=36.49 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=25.5
Q ss_pred EEEEEEeeeccCcceEEEeEEE-eceeeEEeecceEEeccCCCh
Q 004304 485 IAATAVVLEFNHEVKIKKKIKL-VGYPCKIFKKTALIKDMFTSD 527 (762)
Q Consensus 485 I~ATG~Vl~~D~~~~IvKKlkL-tG~P~KI~KkTAfIK~MF~s~ 527 (762)
++.+|-++.++-.. ...++.. .=||+.+.+..|..+.-+.+.
T Consensus 613 vIlfGFiL~~~~~~-~~n~~~~~~I~~C~~g~~~Cs~~~~~~nk 655 (844)
T PTZ00482 613 VVLFGFAMRQNFWD-HTNKLDNYEIEICEAGREKCTSKQGSSNK 655 (844)
T ss_pred EEEEEEEEEeeccc-ccccccceeEEECCCCcceecccccccCc
Confidence 66777777655432 1111211 347888888888888777664
Done!