Query 004304
Match_columns 762
No_of_seqs 262 out of 539
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 99.8 1.3E-20 4.5E-25 206.9 8.6 167 409-593 303-480 (482)
2 1sqr_A 50S ribosomal protein L 64.1 7 0.00024 35.3 4.4 53 515-581 19-76 (95)
3 3izq_1 HBS1P, elongation facto 61.2 26 0.00088 39.9 9.6 132 351-495 463-610 (611)
4 3sjy_A Translation initiation 56.8 1E+02 0.0035 32.6 12.7 120 352-492 273-402 (403)
5 3tj1_A RNA polymerase I-specif 56.8 3 0.0001 48.4 1.0 6 133-138 357-362 (649)
6 4a18_H RPL35A; ribosome, eukar 55.4 15 0.00052 34.0 5.2 65 513-591 30-109 (113)
7 1f60_A Elongation factor EEF1A 50.3 2.7E+02 0.0091 30.2 14.9 130 353-497 297-442 (458)
8 3mca_A HBS1, elongation factor 48.2 33 0.0011 38.9 7.6 75 410-494 508-591 (592)
9 3j21_c 50S ribosomal protein L 45.0 30 0.001 30.8 5.2 55 514-582 18-77 (87)
10 1jny_A EF-1-alpha, elongation 44.7 3.2E+02 0.011 29.2 14.5 132 353-498 286-431 (435)
11 1s0u_A EIF-2-gamma, translatio 43.3 2.4E+02 0.0082 29.8 13.0 65 411-492 343-407 (408)
12 3iz5_j 60S ribosomal protein L 42.6 23 0.00078 32.8 4.2 54 515-582 29-95 (111)
13 3p26_A Elongation factor 1 alp 42.5 1.6E+02 0.0054 32.1 11.7 133 352-497 330-478 (483)
14 1kk1_A EIF2gamma; initiation o 38.8 3.3E+02 0.011 28.7 13.2 64 411-492 345-409 (410)
15 3izc_j 60S ribosomal protein R 34.6 34 0.0012 31.5 4.0 53 516-582 26-91 (107)
16 3e1y_E Eukaryotic peptide chai 26.4 2.9E+02 0.0099 26.8 9.5 130 353-496 58-201 (204)
17 4aco_A Centromere DNA-binding 24.6 16 0.00054 43.7 0.0 11 422-432 906-916 (956)
18 2elf_A Protein translation elo 20.7 7.5E+02 0.026 26.0 12.4 121 353-491 246-369 (370)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=1.3e-20 Score=206.92 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=132.1
Q ss_pred cccccccCCcEEEEEeeeeeeeeeeeee---ecCCCceeEEeecCCC--ceEEEEEEeecCCCCccEEEEEeccCCCCCe
Q 004304 409 HKKVLKSRDPIIVSIGWRRFQTIPVYAI---EDRSGRHRMLKYTPEH--MHCLATFWGPLAPPQTGVVAVQNLSNNQASF 483 (762)
Q Consensus 409 ~~kiLKSkDpLi~siGwRRFqt~PIyS~---~d~n~R~R~lKYtpeh--m~c~AtfyGPi~~p~tgvlafq~~~~~~~~f 483 (762)
++.+|++..+++|+||..+-.+....-. -+.++.+..-+++..+ ..|...+-.|+++.+-+-+++....+.....
T Consensus 303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~ 382 (482)
T 1wb1_A 303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL 382 (482)
T ss_dssp CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCc
Confidence 3579999999999999999877664433 2333333333444443 4677888899988765555565522212346
Q ss_pred EEEEEEEeeeccCcceEEEeEEEeceeeE-----EeecceEEeccCCChhhhccccCCeeeeccCc-cceeecccccccc
Q 004304 484 RIAATAVVLEFNHEVKIKKKIKLVGYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI-RGQVKKAAKEEIG 557 (762)
Q Consensus 484 rI~ATG~Vl~~D~~~~IvKKlkLtG~P~K-----I~KkTAfIK~MF~s~lEV~~Fkga~LrTksGi-RG~IKkaLgt~~~ 557 (762)
|++|.|+|+.+.+ +++++|...+.| ++++||+||+||++..+|+||.|..|+|++|. +|+|+.++|+
T Consensus 383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~--- 455 (482)
T 1wb1_A 383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT--- 455 (482)
T ss_dssp CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT---
T ss_pred eEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCC---
Confidence 8999999999877 455666555555 78899999999999999999999999999999 9999999999
Q ss_pred CCCCCCCCCCCCceeEeeeccccccccEEEEeccee
Q 004304 558 NQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 593 (762)
Q Consensus 558 ~~~~~~~~~~phG~fRatFedkIl~sDiVfLrlwkr 593 (762)
+|+|||+|+++|.+||+|||++|+|
T Consensus 456 -----------~G~~~~~f~~~~~~~d~v~~~~~~~ 480 (482)
T 1wb1_A 456 -----------KGLLTAEFSGNVENRDKVILNRLRR 480 (482)
T ss_dssp -----------TTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred -----------CceEEEEecCCCCCCCeeeeehhhc
Confidence 9999999999999999999999997
No 2
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=64.13 E-value=7 Score=35.30 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=42.2
Q ss_pred ecceEEecc-CCChhhhccccCCeeeeccC----ccceeeccccccccCCCCCCCCCCCCceeEeeeccccc
Q 004304 515 KKTALIKDM-FTSDLEVAQCEGKEVRTVSG----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 581 (762)
Q Consensus 515 KkTAfIK~M-F~s~lEV~~Fkga~LrTksG----iRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl 581 (762)
-+||+||-- -++.+|.++|.|-.+-=++- |-|.|.++-|. .|.+||.|...|-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGn--------------sGvVrAkF~~nLP 76 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGT--------------KGAVRARFEKGLP 76 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSS--------------SSCEEEECSSCCS
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCC--------------CCEEEEEeCCCCC
Confidence 356666643 68889999999988766543 78999999998 8999999987764
No 3
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=61.20 E-value=26 Score=39.92 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHhcCCCCCcEEEEEEecCchhhhhccCCCCceeEeec-ccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeee
Q 004304 351 LELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI-GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQ 429 (762)
Q Consensus 351 ~~~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGL-l~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFq 429 (762)
..++.+.||..|.|.|.++...-+.. +.-|.--+. .+.....=.+++.+- + +..+|....+++|+||-.+-.
T Consensus 463 ~~v~~A~aGd~v~l~l~~~~~~di~r---Gdvl~~~~~~~~~~~~~f~a~v~~l---~-~~~~l~~g~~~~l~~~t~~~~ 535 (611)
T 3izq_1 463 EETDVAIKGDFVTLKLRKAYPEDIQN---GDLAASVDYSSIHSAQCFVLELTTF---D-MNRPLLPGTPFILFIGVKEQP 535 (611)
T ss_dssp CCCCCEETTCEEEEEESSCCTTSCCT---TCEEBCSTTCSCCCBSCEEEEEEEC---S-CSSCBCTTEEEEEESSSCEEE
T ss_pred cccceecCCCcceEEeeeccHhhCcc---eEEccCCCCCCCceeeEEEEEEEEE---C-CCCCCCCCCEEEEEECCeEee
Confidence 34555778999999998875443321 111111111 122222222233332 2 467999999999999998765
Q ss_pred eee--eeeeecCCCcee--EEeecCCCceEEEEEEe-----ecCCCC------ccEEEEEeccCCCCCeEEEEEEEeeec
Q 004304 430 TIP--VYAIEDRSGRHR--MLKYTPEHMHCLATFWG-----PLAPPQ------TGVVAVQNLSNNQASFRIAATAVVLEF 494 (762)
Q Consensus 430 t~P--IyS~~d~n~R~R--~lKYtpehm~c~AtfyG-----Pi~~p~------tgvlafq~~~~~~~~frI~ATG~Vl~~ 494 (762)
+.- |-+.-+.++-.+ --+++..+..+++.|-- ||++-+ +|=+++... -+.+|.|+|+.+
T Consensus 536 ~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~------~~Tva~G~i~~v 609 (611)
T 3izq_1 536 ARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD------GRTIAAGKISEI 609 (611)
T ss_dssp EEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESS------SSEEEEEEEEEE
T ss_pred EEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeC------CCEEEEEEEEEe
Confidence 432 223233332111 12366677766666654 876543 344455432 168999999987
Q ss_pred c
Q 004304 495 N 495 (762)
Q Consensus 495 D 495 (762)
+
T Consensus 610 ~ 610 (611)
T 3izq_1 610 T 610 (611)
T ss_dssp C
T ss_pred c
Confidence 6
No 4
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=56.85 E-value=1e+02 Score=32.64 Aligned_cols=120 Identities=9% Similarity=0.101 Sum_probs=67.4
Q ss_pred HhcCCCCCcEEEEEEe---cCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCc-----ccccccccCCcEEEEE
Q 004304 352 ELEGFRTGTYLRMEIH---DVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRW-----WHKKVLKSRDPIIVSI 423 (762)
Q Consensus 352 ~~eG~~~G~YVrI~i~---~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw-----~~~kiLKSkDpLi~si 423 (762)
.++.+.||+.|.|.+. ++...-+ ....-|.-.+.+|.-...=-+++.+-.|.+ .+..+|+...+++|++
T Consensus 273 ~~~~a~~G~~v~~~l~~~~~~~~~d~---~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (403)
T 3sjy_A 273 EFKEAKPGGLVAIGTYLDPSLTKADN---LLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSV 349 (403)
T ss_dssp EESEECSSSCEEEEESSCHHHHGGGT---TTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEE
T ss_pred EcCEEeCCCEEEEEeccccccchhhh---ccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEE
Confidence 4556789999999876 2222111 111212111222221111122333333322 1267999999999999
Q ss_pred eeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecCC-CCc-cEEEEEeccCCCCCeEEEEEEEee
Q 004304 424 GWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP-PQT-GVVAVQNLSNNQASFRIAATAVVL 492 (762)
Q Consensus 424 GwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~-p~t-gvlafq~~~~~~~~frI~ATG~Vl 492 (762)
|-.+-...-. +... . .+...+--|++. .+. .|+..+... ..+||+++|.|.
T Consensus 350 gt~~~~~~v~-~~~~--~------------~~~~~l~~p~~~~~g~~r~~i~r~~~---~~~r~~g~g~i~ 402 (403)
T 3sjy_A 350 GSSTTLGIVT-SVKK--D------------EIEVELRRPVAVWSNNIRTVISRQIA---GRWRMIGWGLVE 402 (403)
T ss_dssp TTEEEEEEEE-EECS--S------------EEEEEEEEEEECCSSSCEEEEEEEET---TEEEEEEEEEEE
T ss_pred CccEEEEEEE-EecC--c------------eEEEEeCCcEeeccCCEEEEEEEEeC---CcEEEEEEEEEE
Confidence 9876655443 2221 1 345556677654 456 788877763 579999999874
No 5
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=56.76 E-value=3 Score=48.43 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=3.2
Q ss_pred hhhhhc
Q 004304 133 LIQLVY 138 (762)
Q Consensus 133 l~~lvY 138 (762)
+|.+++
T Consensus 357 im~llf 362 (649)
T 3tj1_A 357 ILTLVS 362 (649)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 6
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=55.38 E-value=15 Score=34.04 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=48.8
Q ss_pred EeecceEEecc-CCChhhhccccCCeee----ec--cC-----ccceeeccccccccCCCCCCCCCCCCceeEeeecccc
Q 004304 513 IFKKTALIKDM-FTSDLEVAQCEGKEVR----TV--SG-----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 580 (762)
Q Consensus 513 I~KkTAfIK~M-F~s~lEV~~Fkga~Lr----Tk--sG-----iRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkI 580 (762)
-+-|||+||-- =++.+|..+|.|-.+- ++ .| |-|.|..+-|. .|.+||.|...|
T Consensus 30 Q~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~g~k~RviwGKVtR~HGn--------------sGvVrAkF~~nL 95 (113)
T 4a18_H 30 QNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGN--------------NGVAVARFAHNL 95 (113)
T ss_dssp EEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEETT--------------TTEEEEEESSCC
T ss_pred CCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeeeCC--------------CCeEEEEeCCCC
Confidence 56678888864 5788999999997553 22 34 24999999988 899999999887
Q ss_pred c---cccEEEEecc
Q 004304 581 L---MSDIVFMRGW 591 (762)
Q Consensus 581 l---~sDiVfLrlw 591 (762)
- ++..|.+-||
T Consensus 96 P~kA~G~~VrVmLy 109 (113)
T 4a18_H 96 PPQAIGSVLRVMLY 109 (113)
T ss_dssp CGGGGGSEEEEECC
T ss_pred ChHHcCCeEEEEEe
Confidence 4 4556776666
No 7
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=50.26 E-value=2.7e+02 Score=30.22 Aligned_cols=130 Identities=14% Similarity=0.122 Sum_probs=73.3
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEeec---ccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI---GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQ 429 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGL---l~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFq 429 (762)
+..+.||..|.|.|.++...- -..-.+||.- .+.....=-.++.+-. ++.+|+...+++|+||-.+-.
T Consensus 297 ~~~a~aG~~v~i~l~gi~~~~-----i~rG~vl~~~~~~~~~~~~~f~a~v~~l~----~~~~i~~g~~~~~~~~t~~~~ 367 (458)
T 1f60_A 297 LEQGVPGDNVGFNVKNVSVKE-----IRRGNVCGDAKNDPPKGCASFNATVIVLN----HPGQISAGYSPVLDCHTAHIA 367 (458)
T ss_dssp CSCBCTTCEEEEEESSCCTTT-----SCTTCEEEETTSSCCCCCSEEEEEEEECS----CSCCBCTTCCCEEEETTEEEE
T ss_pred EEEEcCCCEEEEEEcCCcccc-----cCceeEEecCCCCCCceeeEEEEEEEEeC----CCCCCCCCCEEEEEeccceEE
Confidence 445788999999988764221 1233444432 2222222222333322 356899999999999988755
Q ss_pred ee--eeeeeecCCCceeEE---eecCCCceEE--EEEEeecCC------CCccEEEEEeccCCCCCeEEEEEEEeeeccC
Q 004304 430 TI--PVYAIEDRSGRHRML---KYTPEHMHCL--ATFWGPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFNH 496 (762)
Q Consensus 430 t~--PIyS~~d~n~R~R~l---KYtpehm~c~--AtfyGPi~~------p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~ 496 (762)
.. .|.+.-+.++-.+.. +++..+..|. ..+--|+++ +.+|=+++... -+.+|.|+|+.+.+
T Consensus 368 ~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~------~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 368 CRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM------RQTVAVGVIKSVDK 441 (458)
T ss_dssp EEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEET------TEEEEEEEEEEEEC
T ss_pred EEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEEC------CeEEEEEEEEeecc
Confidence 43 233333433322222 3666666544 445577754 23334455442 17899999998877
Q ss_pred c
Q 004304 497 E 497 (762)
Q Consensus 497 ~ 497 (762)
.
T Consensus 442 ~ 442 (458)
T 1f60_A 442 T 442 (458)
T ss_dssp -
T ss_pred c
Confidence 5
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=48.15 E-value=33 Score=38.88 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=46.1
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEE---eecCC------CCccEEEEEeccCCC
Q 004304 410 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW---GPLAP------PQTGVVAVQNLSNNQ 480 (762)
Q Consensus 410 ~kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~Atfy---GPi~~------p~tgvlafq~~~~~~ 480 (762)
..+|....+++|+||-.+-.+.- .+...+.. --+++..+..|.+.|- .|+++ +..+-++++..
T Consensus 508 ~~pi~~g~~~~l~~~t~~~~~~i--~l~~~~~~--~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~---- 579 (592)
T 3mca_A 508 HGPILSGSTLVLHLGRTVTSVSL--KIVTVNNK--RSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS---- 579 (592)
T ss_dssp SSCEETTEEEEEECSSCEEEEEE--EEEESSSS--CCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEESS----
T ss_pred CccCCCCCEEEEEEcCcEEEEEE--EEEecccc--chhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEEEC----
Confidence 46889889999999977654433 22111110 1134556767766665 77777 55666666532
Q ss_pred CCeEEEEEEEeeec
Q 004304 481 ASFRIAATAVVLEF 494 (762)
Q Consensus 481 ~~frI~ATG~Vl~~ 494 (762)
-+.+|.|+|..+
T Consensus 580 --~~Tv~~G~i~~v 591 (592)
T 3mca_A 580 --GDTVAAGIVKEL 591 (592)
T ss_dssp --SSEEEEEEEEEE
T ss_pred --CcEEEEEEEEEc
Confidence 257899998754
No 9
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=45.03 E-value=30 Score=30.82 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=38.7
Q ss_pred eecceEEecc-CCChhhhccccCCeee--ecc--CccceeeccccccccCCCCCCCCCCCCceeEeeecccccc
Q 004304 514 FKKTALIKDM-FTSDLEVAQCEGKEVR--TVS--GIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILM 582 (762)
Q Consensus 514 ~KkTAfIK~M-F~s~lEV~~Fkga~Lr--Tks--GiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~ 582 (762)
+-|||+||-- =++.+|..+|.|-.+- ++. =|.|.|..+-|. .|.+||.|...|-.
T Consensus 18 ~~~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~HGn--------------sGvVrAkF~~nLP~ 77 (87)
T 3j21_c 18 HNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGT--------------KGAVRARFEKGLPG 77 (87)
T ss_dssp CTTCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEECCS--------------SSCEEEEESSCCCS
T ss_pred CCCeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCC--------------CCeEEEEeCCCCCh
Confidence 3456666643 4677888888775443 333 358999999887 89999999876643
No 10
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=44.66 E-value=3.2e+02 Score=29.22 Aligned_cols=132 Identities=8% Similarity=0.065 Sum_probs=68.9
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcc-cccccccCCcEEEEEeeeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWW-HKKVLKSRDPIIVSIGWRRFQTI 431 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~-~~kiLKSkDpLi~siGwRRFqt~ 431 (762)
++.+.||..|.|.|.++...-+. .+.-|.-.+-.+... .-+.+.|. |. +..+|+...+++|+||-.+-...
T Consensus 286 ~~~a~aG~~v~~~l~g~~~~~i~---~Gd~l~~~~~~~~~~--~~f~a~v~---~l~~~~~l~~g~~~~~~~~t~~~~~~ 357 (435)
T 1jny_A 286 MDKAEPGDNIGFNVRGVEKKDIK---RGDVVGHPNNPPTVA--DEFTARII---VVWHPTALANGYTPVLHVHTASVACR 357 (435)
T ss_dssp ESEECTTCEEEEEEESSCGGGCC---TTCEEECTTSCCCEE--SEEEEEEE---ECCCSSCBCTTCCCEEEETTEEEEEE
T ss_pred EeEEcCCCEEEEEEecCCHHHcC---CccEecCCCCCceEe--EEEEEEEE---EECCCCcCCCCCEEEEEeCCcEEEEE
Confidence 44567888888888876543222 111111111011111 11122221 21 25789999999999998876554
Q ss_pred --eeeeeecCCCceeEE---eecCCCceEEEE--EEeecCCC------CccEEEEEeccCCCCCeEEEEEEEeeeccCcc
Q 004304 432 --PVYAIEDRSGRHRML---KYTPEHMHCLAT--FWGPLAPP------QTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 498 (762)
Q Consensus 432 --PIyS~~d~n~R~R~l---KYtpehm~c~At--fyGPi~~p------~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~ 498 (762)
.|.+.-+.++-.... +++..+..+.+. +--|+++- ++|=+++... -+.+|.|+|+++.+..
T Consensus 358 i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~------~~tv~~G~i~~~~~~~ 431 (435)
T 1jny_A 358 VSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM------GKTVGVGIIVDVKPAK 431 (435)
T ss_dssp EEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET------TEEEEEEEEEEEEC--
T ss_pred EEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEEC------CeEEEEEEEeeecCcc
Confidence 344443433322222 356666655444 44565442 3334555542 1789999999876644
No 11
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=43.28 E-value=2.4e+02 Score=29.82 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=43.6
Q ss_pred cccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecCCCCccEEEEEeccCCCCCeEEEEEEE
Q 004304 411 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 490 (762)
Q Consensus 411 kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlafq~~~~~~~~frI~ATG~ 490 (762)
.+|+...+++|++|-.+-...-.. .. . ..|...+--|+++..---+++.... ....|++|+|.
T Consensus 343 ~~l~~g~~~~~~~~t~~~~~~v~~-~~----------~----~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~r~ig~G~ 405 (408)
T 1s0u_A 343 EPLRTGEVLMLNIGTATTAGVITS-AR----------G----DIADIKLKLPICAEIGDRVAISRRV--GSRWRLIGYGT 405 (408)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEE-EE----------T----TEEEEEEEEEEECCTTCEEEEEEEC--SSSEEEEEEEE
T ss_pred cCCCCCCEEEEEEcCCEEEEEEEE-ec----------C----CEEEEEECCcEEecCCCEEEEEEec--CCCeEEEEEEE
Confidence 789999999999997654433222 11 1 2677778899877554444444432 24689999999
Q ss_pred ee
Q 004304 491 VL 492 (762)
Q Consensus 491 Vl 492 (762)
|.
T Consensus 406 i~ 407 (408)
T 1s0u_A 406 IE 407 (408)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 12
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=42.64 E-value=23 Score=32.79 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=38.7
Q ss_pred ecceEEecc-CCChhhhccccCCeeee---------ccCc---cceeeccccccccCCCCCCCCCCCCceeEeeeccccc
Q 004304 515 KKTALIKDM-FTSDLEVAQCEGKEVRT---------VSGI---RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 581 (762)
Q Consensus 515 KkTAfIK~M-F~s~lEV~~Fkga~LrT---------ksGi---RG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl 581 (762)
-|||+||-- =++.+|..+|.|-.+-= .+.+ -|.|..+-|. .|.+||.|...|-
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGn--------------sGvVrAkF~~nLP 94 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGN--------------SGVVRAKFRSNLP 94 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSS--------------SSCEEEECSSCCS
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCC--------------CCEEEEEeCCCCC
Confidence 355666543 46788999998876521 1223 4999999988 8999999998774
Q ss_pred c
Q 004304 582 M 582 (762)
Q Consensus 582 ~ 582 (762)
.
T Consensus 95 ~ 95 (111)
T 3iz5_j 95 P 95 (111)
T ss_dssp T
T ss_pred h
Confidence 3
No 13
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=42.55 E-value=1.6e+02 Score=32.09 Aligned_cols=133 Identities=11% Similarity=0.073 Sum_probs=68.7
Q ss_pred HhcCCCCCcEEEEEEecCchhhhhccCCCCceeEeec-ccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee
Q 004304 352 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI-GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 430 (762)
Q Consensus 352 ~~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGL-l~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt 430 (762)
.++.+.||+.|.|.|.++...-+.. +.-|.--+. .+.....=.+++.+- + ++.+|+...+++|.||-.+-.+
T Consensus 330 ~~~~a~aG~~v~~~l~~~~~~di~r---G~vl~~~~~~~~~~~~~f~a~v~~l---~-~~~~l~~g~~~~l~~~t~~~~~ 402 (483)
T 3p26_A 330 ETDVAIKGDFVTLKLRKAYPEDIQN---GDLAASVDYSSIHSAQCFVLELTTF---D-MNRPLLPGTPFILFIGVKEQPA 402 (483)
T ss_dssp EESCEETTCEEEEEEESCCGGGCCT---TCEEECTTCCCCEECSEEEEEEEEC---S-CSSCBCTTCEEEEEETTEEEEE
T ss_pred cccEECCCCEEEEEEEecccccCCc---eEEEEcCCCCCCceeeEEEEEEEEE---C-CCCCCCCCCEEEEEeCceEEEE
Confidence 3445667777777777765443321 111110011 111111111223222 2 5779999999999999887654
Q ss_pred ee--eeeeecCCCcee--EEeecCCCceEEEEEEe-----ecCC------CCccEEEEEeccCCCCCeEEEEEEEeeecc
Q 004304 431 IP--VYAIEDRSGRHR--MLKYTPEHMHCLATFWG-----PLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFN 495 (762)
Q Consensus 431 ~P--IyS~~d~n~R~R--~lKYtpehm~c~AtfyG-----Pi~~------p~tgvlafq~~~~~~~~frI~ATG~Vl~~D 495 (762)
.- |-+.-|.++-.+ --+++..+..+++.|-- ||++ +.+|=+++... -+.+|.|+|+..+
T Consensus 403 ~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~------~~tv~~G~i~~~~ 476 (483)
T 3p26_A 403 RIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD------GRTIAAGKISEIT 476 (483)
T ss_dssp EEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEET------TEEEEEEEEEEEC
T ss_pred EEEEEEEEEcCCCcccccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeC------CCEEEEEEEEEec
Confidence 32 222333332211 12356667666666643 6543 34554444331 2578999998876
Q ss_pred Cc
Q 004304 496 HE 497 (762)
Q Consensus 496 ~~ 497 (762)
..
T Consensus 477 ~~ 478 (483)
T 3p26_A 477 QH 478 (483)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=38.84 E-value=3.3e+02 Score=28.72 Aligned_cols=64 Identities=9% Similarity=0.209 Sum_probs=43.5
Q ss_pred cccccCCcEEEEEeeeeeeeeeeeeeecCCCceeEEeecCCCceEEEEEEeecCCCC-ccEEEEEeccCCCCCeEEEEEE
Q 004304 411 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQ-TGVVAVQNLSNNQASFRIAATA 489 (762)
Q Consensus 411 kiLKSkDpLi~siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~-tgvlafq~~~~~~~~frI~ATG 489 (762)
.+|+...+++|++|-.+-...-.. ... ..|...+--|+++.. ..|+.-... ....|++|+|
T Consensus 345 ~~l~~g~~~~~~~~t~~~~~~v~~-~~~--------------~~~~l~~~~p~~~~~~~~~~~~~~~---~~~~r~ig~G 406 (410)
T 1kk1_A 345 EPIKRKEVLLLNVGTARTMGLVTG-LGK--------------DEIEVKLQIPVCAEPGDRVAISRQI---GSRWRLIGYG 406 (410)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEE-EET--------------TEEEEEEEEEEECCTTCEEEEEEEE---TTEEEEEEEE
T ss_pred ccCCCCCEEEEEEcCCEEeEEEEE-ecC--------------CEEEEEeCCcEEecCCCEEEEEEec---CCCcEEEEEE
Confidence 789999999999997654443222 111 267777889987754 555544433 2468999999
Q ss_pred Eee
Q 004304 490 VVL 492 (762)
Q Consensus 490 ~Vl 492 (762)
.|.
T Consensus 407 ~i~ 409 (410)
T 1kk1_A 407 IIK 409 (410)
T ss_dssp EEE
T ss_pred EEc
Confidence 986
No 15
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=34.58 E-value=34 Score=31.49 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=37.2
Q ss_pred cceEEecc-CCChhhhccccCCee----eecc---C-----ccceeeccccccccCCCCCCCCCCCCceeEeeecccccc
Q 004304 516 KTALIKDM-FTSDLEVAQCEGKEV----RTVS---G-----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILM 582 (762)
Q Consensus 516 kTAfIK~M-F~s~lEV~~Fkga~L----rTks---G-----iRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~ 582 (762)
|||+||-- =++.+|..+|.|-.+ +++. | |-|.|..+-|. .|.+||.|...|-.
T Consensus 26 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGn--------------sGvVrAkF~~nLP~ 91 (107)
T 3izc_j 26 NVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGN--------------SGVVRATFRNNLPA 91 (107)
T ss_dssp CEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSS--------------SSCEEECCCSCCST
T ss_pred CeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCC--------------CCeEEEEeCCCCCh
Confidence 45555543 367788899988543 2222 3 35999999887 89999999987743
No 16
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=26.37 E-value=2.9e+02 Score=26.81 Aligned_cols=130 Identities=11% Similarity=0.125 Sum_probs=68.7
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcc-cccccccCCcEEEEEeeeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWW-HKKVLKSRDPIIVSIGWRRFQTI 431 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~-~~kiLKSkDpLi~siGwRRFqt~ 431 (762)
++...||..|.|.|.++...-+.. ..-|.--+-.+...+ -+.++|. |. +..+|....+++++||-.+-...
T Consensus 58 ~~~A~aGd~V~l~L~gi~~~di~r---G~vl~~~~~~~~~~~--~f~a~v~---~l~~~~~i~~g~~~~l~~~t~~~~~~ 129 (204)
T 3e1y_E 58 TDTVAPGENLKIRLKGIEEEEILP---GFILCDPNNLCHSGR--TFDAQIV---IIEHKSIICPGYNAVLHIHTCIEEVE 129 (204)
T ss_dssp BSEECTTSEEEEEEEESSSSCCCT---TCEEBCSSSCCCCCS--EEEEEEE---CCSCCSCCCTTEEEEEESSSCEEEEE
T ss_pred eEEECCCCEEEEEEcCCCHHHCcc---ceEEECCCCCCchhE--EEEEEEE---EeCCCCccCCCceEEEEEeCCEEEEE
Confidence 445789999999999886543332 111111111122222 1223332 31 23378888999999998764432
Q ss_pred --eeeeeecCCCceeE---EeecCCCceEEEE--EEeecCCCC------ccEEEEEeccCCCCCeEEEEEEEeeeccC
Q 004304 432 --PVYAIEDRSGRHRM---LKYTPEHMHCLAT--FWGPLAPPQ------TGVVAVQNLSNNQASFRIAATAVVLEFNH 496 (762)
Q Consensus 432 --PIyS~~d~n~R~R~---lKYtpehm~c~At--fyGPi~~p~------tgvlafq~~~~~~~~frI~ATG~Vl~~D~ 496 (762)
-|.+.-|.++-.+. -+++..+..+.+. +=-||++-. +|=+++... + +-+|.|+|+.+-+
T Consensus 130 i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~-~-----~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 130 ITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE-G-----KTIAIGKVLKLVP 201 (204)
T ss_dssp EEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS-S-----SCCEEEEEEEECC
T ss_pred EEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC-C-----cEEEEEEEEEEec
Confidence 23333343322221 2466666655444 445765543 344444432 1 4678899987654
No 17
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=24.56 E-value=16 Score=43.75 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=0.0
Q ss_pred EEeeeeeeeee
Q 004304 422 SIGWRRFQTIP 432 (762)
Q Consensus 422 siGwRRFqt~P 432 (762)
+.|+-|+.++-
T Consensus 906 ~e~~dR~kAV~ 916 (956)
T 4aco_A 906 HESLDRYKAVD 916 (956)
T ss_dssp -----------
T ss_pred ccchhHHHHHH
Confidence 34555554443
No 18
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=20.75 E-value=7.5e+02 Score=25.98 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=65.3
Q ss_pred hcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeee
Q 004304 353 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP 432 (762)
Q Consensus 353 ~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt~P 432 (762)
++.+.||..|.|.|.++..+-+. .. -+++. .+ .-..-+.++|.--. ++.+|+....++|.||-.+-...-
T Consensus 246 v~~a~aGd~v~i~l~gv~~~~i~---~G--dvl~~-~~--~~~~~f~a~v~~l~--~~~~i~~g~~~~~~~~t~~~~~~v 315 (370)
T 2elf_A 246 IDSAPAGTRVGMRLKNVQAKDIE---RG--FIISD-KE--IVTTDYTLECTVSK--FTKKIEPASVLHLFVGLQSEPVRV 315 (370)
T ss_dssp ESEEETTCEEEEEEESCCGGGCC---TT--CEEES-CC--EEEEEEEEEEEECT--TSCCBCTTCEEEEEETTEEEEEEE
T ss_pred ccEEcCCCcceEEEeccCHHHcC---Cc--eEEEC-CC--ceeEEEEEEEEEEC--CCCCCCCCCEEEEEEcCCEEEEEE
Confidence 44567888888888876443222 12 22222 22 22223333333222 257999999999999998765543
Q ss_pred eeeeecCCCceeEEeecCCCc--eEEEEEEeecCCC-CccEEEEEeccCCCCCeEEEEEEEe
Q 004304 433 VYAIEDRSGRHRMLKYTPEHM--HCLATFWGPLAPP-QTGVVAVQNLSNNQASFRIAATAVV 491 (762)
Q Consensus 433 IyS~~d~n~R~R~lKYtpehm--~c~AtfyGPi~~p-~tgvlafq~~~~~~~~frI~ATG~V 491 (762)
..-..+.++ ..+++ .+. .|...+--|++.. +..|+.... ....|++|.|.|
T Consensus 316 ~~l~~d~~~-~~~~~---~g~~~~v~l~~~~pi~~~~~~rfilr~~----~~~~~tig~G~~ 369 (370)
T 2elf_A 316 EKILVDGNE-VEEAK---PGSTCVLELSGNKKLAYSKQDRFLLANL----DLTQRFAAYGFS 369 (370)
T ss_dssp EEEEETTEE-ESCBC---TTCEEEEEEEEEEEEEECTTSCEEEECT----TSSSCEEEEEEE
T ss_pred EEEEeCCCc-ceeec---CCCEEEEEEEECcEEEEeCCCEEEEEEC----CCCCEEEEEEEe
Confidence 322112221 12222 333 4455556787654 445655543 224689999976
Done!