Query 004305
Match_columns 762
No_of_seqs 163 out of 216
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 21:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2604 Subunit of cis-Golgi t 100.0 7E-139 2E-143 1157.5 61.0 702 12-731 3-732 (733)
2 PF04136 Sec34: Sec34-like fam 100.0 5.5E-36 1.2E-40 292.6 17.3 138 112-249 1-140 (157)
3 PF06419 COG6: Conserved oligo 99.2 9.7E-06 2.1E-10 96.2 55.5 534 111-758 31-618 (618)
4 PF09763 Sec3_C: Exocyst compl 97.2 1.1 2.3E-05 54.7 52.3 119 610-740 574-701 (701)
5 KOG3758 Uncharacterized conser 97.0 1.1 2.3E-05 52.6 48.6 318 113-459 66-430 (655)
6 KOG2604 Subunit of cis-Golgi t 94.2 0.045 9.9E-07 64.1 4.2 132 113-245 541-677 (733)
7 PF03081 Exo70: Exo70 exocyst 87.8 50 0.0011 36.7 21.8 75 678-761 293-371 (371)
8 PF04129 Vps52: Vps52 / Sac2 f 86.5 76 0.0016 37.4 33.0 134 307-448 257-397 (508)
9 PF10191 COG7: Golgi complex c 81.8 1.5E+02 0.0031 37.0 25.8 167 207-402 148-324 (766)
10 COG3883 Uncharacterized protei 81.1 46 0.00099 35.8 14.6 103 106-218 33-139 (265)
11 KOG0810 SNARE protein Syntaxin 77.0 1.2E+02 0.0026 33.3 17.1 174 126-306 41-224 (297)
12 PF06008 Laminin_I: Laminin Do 76.6 54 0.0012 35.0 13.9 107 116-229 36-145 (264)
13 PF13949 ALIX_LYPXL_bnd: ALIX 67.8 58 0.0013 35.0 11.9 103 92-198 177-283 (296)
14 cd08915 V_Alix_like Protein-in 63.3 70 0.0015 35.4 11.6 102 92-197 227-332 (342)
15 PF04108 APG17: Autophagy prot 57.9 3.4E+02 0.0074 31.1 19.5 37 262-301 336-373 (412)
16 KOG1490 GTP-binding protein CR 56.5 48 0.001 38.8 8.7 104 113-217 79-193 (620)
17 PF04048 Sec8_exocyst: Sec8 ex 55.6 2E+02 0.0044 27.8 12.8 50 91-144 42-91 (142)
18 PF04899 MbeD_MobD: MbeD/MobD 53.4 1.5E+02 0.0032 25.6 9.5 67 99-165 2-68 (70)
19 PF14643 DUF4455: Domain of un 52.4 4.4E+02 0.0096 30.8 29.4 101 90-195 12-123 (473)
20 cd09234 V_HD-PTP_like Protein- 51.8 1.5E+02 0.0033 32.9 11.8 91 105-198 238-328 (337)
21 KOG1961 Vacuolar sorting prote 50.3 5.3E+02 0.011 31.1 44.6 109 116-233 76-188 (683)
22 cd09237 V_ScBro1_like Protein- 50.0 1.1E+02 0.0024 34.1 10.5 96 102-197 248-346 (356)
23 PF08580 KAR9: Yeast cortical 47.8 1.5E+02 0.0032 36.4 11.6 109 86-222 33-146 (683)
24 PF06248 Zw10: Centromere/kine 45.9 4.2E+02 0.0091 31.8 15.1 142 90-236 8-154 (593)
25 PF06103 DUF948: Bacterial pro 45.2 1.8E+02 0.004 25.6 9.1 34 152-185 53-86 (90)
26 PF00435 Spectrin: Spectrin re 43.9 2.1E+02 0.0045 24.5 10.9 59 90-151 9-67 (105)
27 PF10168 Nup88: Nuclear pore c 43.3 7.4E+02 0.016 30.7 19.8 87 126-223 566-652 (717)
28 cd09238 V_Alix_like_1 Protein- 43.1 1.4E+02 0.003 33.3 9.7 85 109-197 245-329 (339)
29 COG1084 Predicted GTPase [Gene 42.0 1.9E+02 0.004 32.4 10.1 85 112-197 78-162 (346)
30 KOG0804 Cytoplasmic Zn-finger 41.6 2.6E+02 0.0056 32.4 11.3 118 111-229 339-458 (493)
31 PF04012 PspA_IM30: PspA/IM30 41.4 4.1E+02 0.009 27.3 15.0 116 91-220 64-179 (221)
32 cd09236 V_AnPalA_UmRIM20_like 40.8 2.4E+02 0.0052 31.6 11.2 89 105-197 255-343 (353)
33 PRK04778 septation ring format 39.5 3.3E+02 0.0072 32.6 12.8 26 195-223 436-461 (569)
34 cd00176 SPEC Spectrin repeats, 39.0 2.5E+02 0.0054 27.4 10.1 20 90-109 8-27 (213)
35 PF06148 COG2: COG (conserved 36.5 50 0.0011 31.5 4.3 104 86-193 26-130 (133)
36 KOG2196 Nuclear porin [Nuclear 35.6 4.8E+02 0.01 27.9 11.4 109 94-220 80-188 (254)
37 PF07303 Occludin_ELL: Occludi 33.7 3.8E+02 0.0083 24.6 9.9 62 110-172 7-68 (101)
38 cd00179 SynN Syntaxin N-termin 32.8 4.4E+02 0.0095 25.1 13.0 46 169-214 87-141 (151)
39 smart00503 SynN Syntaxin N-ter 32.2 3E+02 0.0065 24.9 8.7 7 174-180 57-63 (117)
40 cd08816 CARD_RIG-I_1 Caspase a 31.8 92 0.002 27.8 4.7 66 366-438 5-70 (89)
41 cd07624 BAR_SNX7_30 The Bin/Am 31.5 5.7E+02 0.012 26.1 11.5 21 113-133 19-39 (200)
42 PF06320 GCN5L1: GCN5-like pro 31.2 4.6E+02 0.01 24.8 12.3 75 132-225 40-114 (121)
43 PHA03386 P10 fibrous body prot 31.2 2.3E+02 0.0049 25.8 7.1 54 127-184 7-60 (94)
44 KOG1962 B-cell receptor-associ 30.9 1.8E+02 0.004 30.4 7.6 59 119-177 152-210 (216)
45 TIGR00153 conserved hypothetic 29.9 3.8E+02 0.0083 27.5 10.0 54 162-224 45-99 (216)
46 cd09235 V_Alix Middle V-domain 29.7 4.6E+02 0.01 29.1 11.2 83 112-198 248-330 (339)
47 smart00150 SPEC Spectrin repea 29.3 3.5E+02 0.0077 22.9 10.5 91 90-183 6-100 (101)
48 PHA03332 membrane glycoprotein 28.9 3.9E+02 0.0084 34.2 10.8 68 174-241 973-1051(1328)
49 cd07666 BAR_SNX7 The Bin/Amphi 28.5 6.9E+02 0.015 26.7 11.6 84 111-194 57-156 (243)
50 PF00015 MCPsignal: Methyl-acc 28.4 3.7E+02 0.008 26.8 9.4 34 133-166 136-169 (213)
51 KOG1333 Uncharacterized conser 27.7 2.7E+02 0.0059 28.9 7.9 35 483-517 149-184 (241)
52 PF05700 BCAS2: Breast carcino 27.6 7.2E+02 0.016 25.9 11.7 73 111-183 132-219 (221)
53 KOG2307 Low density lipoprotei 27.5 1.1E+03 0.025 28.2 13.7 128 86-219 46-175 (705)
54 PF09325 Vps5: Vps5 C terminal 26.9 7E+02 0.015 25.5 11.4 18 207-224 105-122 (236)
55 PF01865 PhoU_div: Protein of 26.8 2.2E+02 0.0048 29.0 7.5 55 161-224 41-96 (214)
56 PF13874 Nup54: Nucleoporin co 26.6 4.3E+02 0.0093 25.5 9.0 52 149-200 75-127 (141)
57 PF14932 HAUS-augmin3: HAUS au 26.1 8E+02 0.017 26.2 11.8 52 171-224 136-187 (256)
58 PF15290 Syntaphilin: Golgi-lo 25.9 6.1E+02 0.013 27.7 10.4 84 114-197 71-162 (305)
59 PF04136 Sec34: Sec34-like fam 25.3 6.7E+02 0.014 24.8 10.4 43 124-166 6-48 (157)
60 PF06005 DUF904: Protein of un 25.3 4.5E+02 0.0097 22.7 9.0 58 125-182 4-61 (72)
61 PF10498 IFT57: Intra-flagella 24.7 7.7E+02 0.017 27.9 11.7 56 84-139 183-244 (359)
62 PRK15352 type III secretion sy 23.7 4.6E+02 0.01 23.7 7.7 49 126-174 68-116 (125)
63 COG4477 EzrA Negative regulato 23.5 8.9E+02 0.019 28.8 12.0 52 268-324 509-561 (570)
64 PF10372 YojJ: Bacterial membr 22.8 2.5E+02 0.0054 24.2 5.7 50 113-162 15-65 (70)
65 KOG0804 Cytoplasmic Zn-finger 22.4 1.1E+03 0.024 27.5 12.2 75 96-170 339-413 (493)
66 KOG3876 Arfaptin and related p 21.7 4.4E+02 0.0095 28.5 8.3 18 297-314 302-319 (341)
67 cd07660 BAR_Arfaptin The Bin/A 21.0 9.5E+02 0.021 25.0 10.7 39 148-186 46-84 (201)
68 KOG3771 Amphiphysin [Intracell 20.9 1.2E+03 0.025 27.3 12.2 137 602-740 78-230 (460)
69 PF09325 Vps5: Vps5 C terminal 20.7 9.1E+02 0.02 24.6 12.2 91 90-180 93-183 (236)
70 cd00176 SPEC Spectrin repeats, 20.4 7E+02 0.015 24.1 9.6 84 93-179 117-205 (213)
71 PRK10807 paraquat-inducible pr 20.3 6.6E+02 0.014 30.0 10.7 21 207-227 508-528 (547)
72 cd07592 BAR_Endophilin_A The B 20.2 1E+03 0.022 25.0 11.2 99 91-196 112-212 (223)
73 TIGR01834 PHA_synth_III_E poly 20.2 6.5E+02 0.014 28.0 9.7 46 86-131 225-276 (320)
74 COG3352 FlaC Putative archaeal 20.1 6.2E+02 0.014 25.1 8.4 85 91-185 46-130 (157)
75 PF06419 COG6: Conserved oligo 20.0 1E+03 0.022 28.9 12.3 96 84-194 26-136 (618)
No 1
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-139 Score=1157.48 Aligned_cols=702 Identities=41% Similarity=0.661 Sum_probs=634.8
Q ss_pred CCCccchhhhchHhhhhhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCcchhhhhhcCh
Q 004305 12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT 91 (762)
Q Consensus 12 ~~~~~~~~~~~~~~~We~~apLs~~Q~~~i~~l~~~~~~~plp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (762)
+..+|.++.+.....|+..|||+|+|+..+..+.++..++|-|+.++.++.+... + .|-++| ..++.++
T Consensus 3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~-~-----~d~~l~-----~~~~~~~ 71 (733)
T KOG2604|consen 3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLT-S-----QDISLG-----EENLTNT 71 (733)
T ss_pred chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCC-C-----CCccCC-----cccccch
Confidence 3456777777777888889999999999999999999999999998877531111 1 123333 4678999
Q ss_pred HHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004305 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171 (762)
Q Consensus 92 ~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~ 171 (762)
.+|+.||+++...+...++.+|+.|+++|....++|+.+|+|++++++.|++|..+|++|+.||++||++||+|+.||.+
T Consensus 72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k 151 (733)
T KOG2604|consen 72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK 151 (733)
T ss_pred hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHH--HHh
Q 004305 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQVQAA--IRS 249 (762)
Q Consensus 172 L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~l~~a~--ir~ 249 (762)
|.++||.|+.+|+||++||+++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||.||. ||.
T Consensus 152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~ 231 (733)
T KOG2604|consen 152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT 231 (733)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998873 332
Q ss_pred cc-------------CC-CCCCCchhhhhHHHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHH
Q 004305 250 SG-------------GS-KTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGI 315 (762)
Q Consensus 250 ~~-------------~~-~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~ 315 (762)
+. .. +.....++.++++|+||.++|+++|+++++||+|+.++||.++|.+||+.||++|.+|++|+
T Consensus 232 y~~~vlkq~t~q~l~~~~~~~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~ll~pv 311 (733)
T KOG2604|consen 232 YFTNVLKQTTSQVLKRSKNMNPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLRLLKPV 311 (733)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 10 01 11223356799999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCccchhchhhhHHHHHHHHHHhhcccccccCCHHHHHH
Q 004305 316 VQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCE 395 (762)
Q Consensus 316 i~~~l~~~~~~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~s~~~~l~~~le~Lc~~LYd~lRp~Ii~e~~L~~Lce 395 (762)
|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+. ..+..|+++||.++||..||+|+|+.|+++||+
T Consensus 312 i~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~~---f~~~~~~~~lc~~lyd~~r~~ilh~~~l~tL~e 388 (733)
T KOG2604|consen 312 IDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMGD---FKLMHYLENLCQSLYDNSRPLILHEKHLETLCE 388 (733)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCCc---hHHHHHHHHhchHhhcchhhHHHHHHHHHHHHH
Confidence 99999999988899999999999999999999999999999873 689999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccCCCchhhhhccCCCCC---C
Q 004305 396 LVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLE---T 472 (762)
Q Consensus 396 l~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~Y~P~~~DL~yP~kL~~~~~~~~~---~ 472 (762)
.|++++.++++++.+ ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......+ .
T Consensus 389 ~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~~l~~~ 465 (733)
T KOG2604|consen 389 VCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQSLRLS 465 (733)
T ss_pred HHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHhhccCC
Confidence 999999999988765 2333789999999999999999999999999999999999999999999985422111 0
Q ss_pred CCC------CCCccccccCCchHHHHHHHHHhhhhccChhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHh
Q 004305 473 TPA------DENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKY 546 (762)
Q Consensus 473 ~~~------~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~~LA~eaV~~Ci~SL~~A~~~i~~~~~~~Dg~LFlIKh 546 (762)
++. ......-.+| |||+|||.||||||+|||+.||+|+||+++|.||+||.+|++.|+++++++||+||+|||
T Consensus 466 D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~LfliKh 544 (733)
T KOG2604|consen 466 DEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAELFLIKH 544 (733)
T ss_pred chhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchhhHHHH
Confidence 100 0112234567 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccccccccchhhHHHHHHHHccCcccccccchhhhhhh---cccchhhhhhhhHHHHHHHHHHHH
Q 004305 547 LLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLART---LSPRVLESQIDAKKELEKSLKATC 623 (762)
Q Consensus 547 LLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~~---l~P~v~e~~~Dsk~eld~~Lk~~c 623 (762)
||||||||+||+|+|+++|+++|||++++++++++.+...||+++++|+++++ ++|+|+++++|+|+|||.+||.+|
T Consensus 545 LLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~qLr~a~ 624 (733)
T KOG2604|consen 545 LLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQLRSAC 624 (733)
T ss_pred HHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999987664 599999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004305 624 EEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMK 703 (762)
Q Consensus 624 e~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~~~~~~~~~~i~~~lp~~~~~m~ 703 (762)
++||+.++..+++|+.+|+.++.+.+.+.....++-+........+.+++||.|..|..++.++...+...++.++..|.
T Consensus 625 ~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~~~~~~~~ 704 (733)
T KOG2604|consen 625 EKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLYVIQASME 704 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999988776555554444444567788999999999999999999999999999999999
Q ss_pred hhcCChhHHHHhHHHHHHHHHHHHHHHH
Q 004305 704 LYLQNPSTRTILFKPVKTNIVEAHIQVQ 731 (762)
Q Consensus 704 lYL~d~~t~~iL~~pI~~~i~~~~~q~~ 731 (762)
+|+.|+.+.++.++||+++|+|.|..|.
T Consensus 705 ~~~sn~~~~f~~f~~~~n~i~q~f~~~~ 732 (733)
T KOG2604|consen 705 LLLSNDDENFIYFQPVRNNIQQVFYKFM 732 (733)
T ss_pred HHhhcCcccchhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999998864
No 2
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=100.00 E-value=5.5e-36 Score=292.59 Aligned_cols=138 Identities=42% Similarity=0.759 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004305 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (762)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~ 191 (762)
+|+.|.++|..+.++|+.++++++++++.|++|..+|..|+++|++||++|++|+.||++|++++++|+++|+||++||+
T Consensus 1 ~y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 80 (157)
T PF04136_consen 1 KYRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDP 80 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHH--HHHh
Q 004305 192 IAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQVQA--AIRS 249 (762)
Q Consensus 192 i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~l~~a--~ir~ 249 (762)
|+|+||+|+.+|.+++|.+||.+||+||+||++||+||||++|++||||||+|| +||+
T Consensus 81 itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~ 140 (157)
T PF04136_consen 81 ITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKN 140 (157)
T ss_pred HHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 3555
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.20 E-value=9.7e-06 Score=96.24 Aligned_cols=534 Identities=14% Similarity=0.200 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Q 004305 111 EKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELE 190 (762)
Q Consensus 111 ~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le 190 (762)
.....+++++....++.+.+-++++..-..-++|...-.....+|..+-+..+.|-.+++.++...+-+..-+..|.-=+
T Consensus 31 ~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~ 110 (618)
T PF06419_consen 31 KINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSE 110 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 33455666666666677777777777777777777777777888999999999999999999999999999999987544
Q ss_pred HHHHhhCCCCCccCCccHHHHHHHHHH----HHHHhhhCCCCcchHHHHHHHHHHHHHHHHHhccCCCCCCCchhhhhHH
Q 004305 191 NIAASFYSPNMNVGNGNFFHLLKRLDE----CILYVEGNPQYAESSVYLLKFRQLQVQAAIRSSGGSKTSVSEGVEASLI 266 (762)
Q Consensus 191 ~i~r~L~sp~~~V~~~~F~~~L~~LD~----ci~Fl~~hp~fkda~~Y~~rfkq~l~~a~ir~~~~~~~~~s~~~~~aLl 266 (762)
.=..-|.+... .-++.|...|.|..+ |-.=|..+ +.+=+--...+-.+.+-++-=|- +.-.
T Consensus 111 ~E~~~L~~~~~-~v~~~FF~~L~r~~~I~~~c~~LL~~~-~~~ag~~iM~~~~~~~e~a~erl-------------~~w~ 175 (618)
T PF06419_consen 111 EEEDALTSGEE-PVDDEFFDALDRVQKIHEDCKILLSTE-NQRAGLEIMEQMSKYLERAYERL-------------YRWV 175 (618)
T ss_pred HHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 44455544322 247889998888753 44333222 22222222222222221110000 0000
Q ss_pred HHHHHHH-------HHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc-----------cCC
Q 004305 267 YVRFKAA-------ASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSK-----------KET 328 (762)
Q Consensus 267 Y~kF~~~-------a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~~~~~-----------~~~ 328 (762)
=..|+.. .+.++.-+..|..| ++ +.+.|.+.|.+.|.+.|..-.-..++.-.. .+|
T Consensus 176 q~e~~~l~~~~~~~~~~l~~al~~L~~r---p~---lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhD 249 (618)
T PF06419_consen 176 QRECRSLNLDNPEVSPLLRRALRYLRER---PV---LFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHD 249 (618)
T ss_pred HHHHhhhhhcCcccchHHHHHHHHHhcC---hH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccC
Confidence 1112222 12233333334333 43 567899999999999887755555543221 147
Q ss_pred chhhHHhHHHHHHHHHHHHHHhhcccCCCCccc-------------------hhchhhhHHHHHHHHHHhhcccccccCC
Q 004305 329 LPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSED-------------------ISSLAPLIDPLSTFLYDILRPKLIHETN 389 (762)
Q Consensus 329 l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~s~-------------------~~~l~~~le~Lc~~LYd~lRp~Ii~e~~ 389 (762)
-..++-.-.+|+-|..-.|.++....|...+.. ..-++.-++++|.||=-.+-.-|-.+.+
T Consensus 250 P~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQvi~se~~ 329 (618)
T PF06419_consen 250 PLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCRPLKIRVEQVISSEED 329 (618)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 778999999999999999999999999764311 1225567788888888777777778999
Q ss_pred HHHHHHHHHHHHHH--HhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCcccCCCchhhhhcc
Q 004305 390 VDLLCELVDILKVE--VLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN-YIPSDEDLNYPSKLEQSA 466 (762)
Q Consensus 390 L~~Lcel~~iL~~e--~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~-Y~P~~~DL~yP~kL~~~~ 466 (762)
.-++-+++.+|+=| |+....+.. ..+-..+..+..-++.++.--.+.+++.=-.. -.|.+.||.-|+-+.
T Consensus 330 ~i~~yki~~LL~fY~~~~~k~i~~~----s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~--- 402 (618)
T PF06419_consen 330 PITLYKIANLLSFYQMTFSKLIGED----SSLIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLI--- 402 (618)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHH---
Confidence 99999999999974 455544322 13555667777777777776667777444344 355567777665443
Q ss_pred CCCCCCCCCCCCccccccCCchHHHHHHHHHhhhhccChhhhh-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004305 467 GTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFT-------GLAQEAVEVCSESIQKASKLIAKRSTPMDG 539 (762)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~-------~LA~eaV~~Ci~SL~~A~~~i~~~~~~~Dg 539 (762)
.++..|.-|...-+.++.. .-=..+|...+.-+.......+..-.+-|.
T Consensus 403 ------------------------d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~ 458 (618)
T PF06419_consen 403 ------------------------DFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDD 458 (618)
T ss_pred ------------------------HHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhh
Confidence 3333333333332222221 112245555555555555555444466666
Q ss_pred -hhHHHHhHHHHhhhccccccccccccccccchhhHHHHHHHHccCcccccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 004305 540 -QLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKS 618 (762)
Q Consensus 540 -~LFlIKhLLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~~l~P~v~e~~~Dsk~eld~~ 618 (762)
..|+|--|...+.-|.||+. +. +--.+|+.+
T Consensus 459 ~~if~iNCl~~i~s~L~~~~~-----------~~-------------------------------------~~~e~L~~~ 490 (618)
T PF06419_consen 459 RAIFMINCLDLIQSTLSPFEF-----------TS-------------------------------------ERVEELQDQ 490 (618)
T ss_pred hHHHHHHhHHHHHHHccChHh-----------HH-------------------------------------HHHHHHHHH
Confidence 89999999999999998873 11 000122222
Q ss_pred HHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHHHHHHHHhhcH
Q 004305 619 LKATCEEFIMAVTKLVVDP--MLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELP 696 (762)
Q Consensus 619 Lk~~ce~fI~~~t~~i~~p--l~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~~~~~~~~~~i~~~lp 696 (762)
+...+..+++.-+..+..- |..+...+..+ .. ......|+++.+-.+|+.+..+..++..-+-.-++
T Consensus 491 id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i---~~--------~~~~~~pls~~p~~~~~~l~~a~~kld~fL~sa~~ 559 (618)
T PF06419_consen 491 IDAHVDTLVEEQASFLLERSGLGDLYNALNMI---FF--------DYDMYGPLSENPGMDPDSLSNALQKLDDFLPSALT 559 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhh---cc--------CCcccCCcccCccCCHHHHHHHHHHHHHHHcccch
Confidence 2222333333333222111 11111111100 00 11235678888889999999999999888888888
Q ss_pred HHHHHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCCCHHHHHHHh
Q 004305 697 PVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQSIINMVSMPDLQAQL 758 (762)
Q Consensus 697 ~~~~~m~lYL~d~~t~~iL~~pI~~~i~~~~~q~~~~~~~~Y~~e~~~~i~~~~~~~l~~~l 758 (762)
.....+ ..|.++.++.-.-+..=.+++.+|++|+..+..-+...+ .+--.||+||+.+|
T Consensus 560 d~~~~L-~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~~n~y~--sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 560 DAQPNL-FKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDPDNGYE--SLFPRTPEEIRTLL 618 (618)
T ss_pred hhhHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhChhcccc--cccCCCHHHHhhcC
Confidence 888888 899999999999999999999999999999986444433 44455788998765
No 4
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=97.17 E-value=1.1 Score=54.73 Aligned_cols=119 Identities=9% Similarity=0.215 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHH-HH
Q 004305 610 DAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHK-VN 688 (762)
Q Consensus 610 Dsk~eld~~Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~~~~~~-~~ 688 (762)
+.+++.....+..|+.++..+...=.+.|.+|++.+++.... .+ ...+..|+==|...++.++.. .-
T Consensus 574 ~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~---~~---------~~ei~~~~~ySk~~l~kvl~~y~~ 641 (701)
T PF09763_consen 574 EFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQT---VS---------PEEISYQAAYSKQELKKVLKSYPS 641 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc---cC---------chhcccchhccHHHHHHHHHhCCh
Confidence 444455566667777777777666778888999988876433 11 111222222245667788777 67
Q ss_pred HHHHhhcHHHHHHHHhhc--------CChhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCh
Q 004305 689 AAIQQELPPVMAKMKLYL--------QNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMP 740 (762)
Q Consensus 689 ~~i~~~lp~~~~~m~lYL--------~d~~t~~iL~~pI~~~i~~~~~q~~~~~~~~Y~~ 740 (762)
+.|+..+..++++|.-.+ .+......+.+.+++.-++.|..++.++.+.|..
T Consensus 642 kev~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~li~~~Y~g 701 (701)
T PF09763_consen 642 KEVRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLETLIQKCYPG 701 (701)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 778888888999999988 4455666778999999999999999999999963
No 5
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=1.1 Score=52.55 Aligned_cols=318 Identities=16% Similarity=0.171 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 004305 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENI 192 (762)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i 192 (762)
-..|+..++......+.+-++++..-...++|..++..+..+|+.+-..-+++=.|..+++.-.+-|...|.-|.--..=
T Consensus 66 N~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E 145 (655)
T KOG3758|consen 66 NEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEE 145 (655)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHH
Confidence 34677888888888888888888888888999999999999999999999999999999999999999999988655444
Q ss_pred HHhhCCCCCccCCccHHHHHHHHHH---HHHHhhhCCCCcchHHHHHHHHHHHHHHHHHhccCCCCCCCchhhhhHHHH-
Q 004305 193 AASFYSPNMNVGNGNFFHLLKRLDE---CILYVEGNPQYAESSVYLLKFRQLQVQAAIRSSGGSKTSVSEGVEASLIYV- 268 (762)
Q Consensus 193 ~r~L~sp~~~V~~~~F~~~L~~LD~---ci~Fl~~hp~fkda~~Y~~rfkq~l~~a~ir~~~~~~~~~s~~~~~aLlY~- 268 (762)
.+-|.+.|- -++.|...|++.-+ .-.+|-.-|++.-+.--..+-.-.+-+| +.-+|.
T Consensus 146 ~~~L~~~g~--i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a-----------------~erl~r~ 206 (655)
T KOG3758|consen 146 LDLLTESGP--IDEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGA-----------------YERLFRW 206 (655)
T ss_pred HHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 455544222 36788888877532 2233433333222221111111111111 111111
Q ss_pred ----HHHHH----HHhHHHHHHHHHhhh-ChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcc-------------
Q 004305 269 ----RFKAA----ASELKPVLEEIESRS-SKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK------------- 326 (762)
Q Consensus 269 ----kF~~~----a~~lk~Li~eie~R~-~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~~~~~~------------- 326 (762)
.|+.. ..+..+++..--.+- .++. +-+.|.+.|.+.|.+-| ++.-|+.+..+
T Consensus 207 ~qs~e~~~l~~t~~~E~~~il~kA~~~L~~~p~---lfk~~ide~~~aR~~~L---~~~Fisaltrg~~~~~PrpIel~a 280 (655)
T KOG3758|consen 207 SQSSECRNLTGTDSQEVSPILRKAFVFLSSRPV---LFKYLIDEVGTARSQSL---LRQFISALTRGGPGGMPRPIELHA 280 (655)
T ss_pred hhhHhhcCCccccchhhHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHH---HHHHHHHHccCCCCCCCCCccccC
Confidence 11111 113444444433332 2343 45567888988887654 33444554321
Q ss_pred CCchhhHHhHHHHHHHHHHHHHHhhcccCCCCc-------------------cchhchhhhHHHHHHHHHHhhccccccc
Q 004305 327 ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-------------------EDISSLAPLIDPLSTFLYDILRPKLIHE 387 (762)
Q Consensus 327 ~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~-------------------s~~~~l~~~le~Lc~~LYd~lRp~Ii~e 387 (762)
+|-..++-.-.+|+-|.-..|.+++...|.... .|..-|+.-++++|.||==.+-.-+..+
T Consensus 281 hDPlRyIGDmLawlHq~ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvcrPlkvRvEqil~~e 360 (655)
T KOG3758|consen 281 HDPLRYIGDMLAWLHQAIANEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVCRPLKVRVEQILQAE 360 (655)
T ss_pred CChHHHHHHHHHHHHHHhhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhcchhHHHHHHHHHcC
Confidence 356678889999999999999999999992211 1122344677777877776666667778
Q ss_pred CCHHHHHHHHHHHHH--HHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccCCCc
Q 004305 388 TNVDLLCELVDILKV--EVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 459 (762)
Q Consensus 388 ~~L~~Lcel~~iL~~--e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~Y~P~~~DL~yP 459 (762)
.|.-.|-++..+|+= ++++.-++.. ..+-..+..|-.-.+.|.+=--..++..-..+=.|.|.||-.|
T Consensus 361 ~~~Iilfki~nlL~FY~~~fs~~v~~d----s~l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPp 430 (655)
T KOG3758|consen 361 KNAIILFKISNLLKFYRVTFSKLVQDD----SALLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPP 430 (655)
T ss_pred cCceeehhHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC
Confidence 999999999999996 4555433321 1233334433333444444444444433333323333376644
No 6
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.045 Score=64.05 Aligned_cols=132 Identities=18% Similarity=0.085 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 004305 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKT-----KTLHDACDRLVIEKQRLIEFAEAVQSKLKYFD 187 (762)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT-----~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 187 (762)
+-.++=-|++.++-++ |.-.++++--.|+.+.+.+..|..++ .+.+.+|-+|+.|+.-...-.+-+..+.-++.
T Consensus 541 liKhLLiLReQiapFr-iq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q 619 (733)
T KOG2604|consen 541 LIKHLLILREQIAPFR-IQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ 619 (733)
T ss_pred HHHHHHHHHHhccccc-eeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence 3445555666666666 55667777778999999999999999 78899999999999988877777778877777
Q ss_pred hHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHH
Q 004305 188 ELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQVQA 245 (762)
Q Consensus 188 ~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~l~~a 245 (762)
.=..+.+...+.+..|.++.+.-++.-+|+|+.+...||++|++..|...|.||...+
T Consensus 620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~ 677 (733)
T KOG2604|consen 620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAA 677 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhh
Confidence 7777777778877789999999999999999999999999999999999999999543
No 7
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=87.81 E-value=50 Score=36.74 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHhh-cCChhHHHHhHHHHHHHHHHHHHHHHHHHHhcCChhhh---hccCCCCHHH
Q 004305 678 DKVAELVHKVNAAIQQELPPVMAKMKLY-LQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQ---SIINMVSMPD 753 (762)
Q Consensus 678 ~~i~~~~~~~~~~i~~~lp~~~~~m~lY-L~d~~t~~iL~~pI~~~i~~~~~q~~~~~~~~Y~~e~~---~~i~~~~~~~ 753 (762)
+.+++....|....++ +++.-+.| +.|++.+.-|-+.|++.|+-+|..|++- |..... .-| =-+|++
T Consensus 293 ~~~ke~f~~Fn~~fee----~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~----~~~~~~~~~Kyi-kyt~~~ 363 (371)
T PF03081_consen 293 ELLKEKFKKFNSAFEE----IYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYER----YRNSQFNPEKYI-KYTPED 363 (371)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCSSSHCCC--SS-HHH
T ss_pred HHHHHHHHHHHHHHHH----HHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHH----hcccccCCCCCC-ccCHHH
Confidence 4577777777777776 55544555 5799999999999999999999996544 333222 112 235888
Q ss_pred HHHHhhhc
Q 004305 754 LQAQLDSL 761 (762)
Q Consensus 754 l~~~l~~~ 761 (762)
|...|+.|
T Consensus 364 le~~l~~L 371 (371)
T PF03081_consen 364 LENMLNEL 371 (371)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 88888765
No 8
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=86.47 E-value=76 Score=37.41 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=79.7
Q ss_pred HHhhhhh-----HHHHHHHHhHhc-cCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCc-cchhchhhhHHHHHHHHHHh
Q 004305 307 QRLSLVK-----GIVQQRISEFSK-KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-EDISSLAPLIDPLSTFLYDI 379 (762)
Q Consensus 307 ~R~~LL~-----p~i~~~l~~~~~-~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~-s~~~~l~~~le~Lc~~LYd~ 379 (762)
.|..+|. |++-.++.+-.. +..+..+.|+-.-.|+-.|.-||.--..||..+. ....-|.+.+++-...+.+.
T Consensus 257 ~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~Dn~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~~~ 336 (508)
T PF04129_consen 257 RRIDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALIDNATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQEF 336 (508)
T ss_pred HHHHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHHHhhhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHH
Confidence 5666655 233333333221 1367789999999999999999988899997742 12234777788888888888
Q ss_pred hcccccccCCHHHHHHHHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004305 380 LRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN 448 (762)
Q Consensus 380 lRp~Ii~e~~L~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~ 448 (762)
+...+-...|.--|-=++-+.+....+ ..+++ ...++.. ++-+.-=||-|-|..++..|..
T Consensus 337 ~~~~l~~~~D~iglll~Irl~~~~~~~--~~~R~--ip~ld~y----~~~~~~~LWprF~~i~d~nieS 397 (508)
T PF04129_consen 337 TEQLLSNSYDAIGLLLCIRLNQRYQFE--MQRRR--IPVLDSY----LNSLLMLLWPRFQKIMDANIES 397 (508)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHH--HHhCC--CCchHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 877655455544333333333332211 12222 1233333 3344445788888888877764
No 9
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=81.84 E-value=1.5e+02 Score=36.99 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHH---HHhccCCCCCCCchhhhhHHHHHHHHHHHhHHHHHHH
Q 004305 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQVQAA---IRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEE 283 (762)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~l~~a~---ir~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~e 283 (762)
....-|..+-.||.=+..=|+|.|...-+..++.=+-..+ +..... +... ..+..+..++..
T Consensus 148 ~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~-----~~~~----------~~~~~~~~if~~ 212 (766)
T PF10191_consen 148 KIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALN-----SRDV----------DAAKEYVKIFSS 212 (766)
T ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHH-----hcCH----------HHHHHHHHHHHH
Confidence 3455677777788888877888777776666665541110 000000 0000 122233344444
Q ss_pred HHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcc---CCchhhHHhHHHHHHHHHHHHHHhhcccCCCCcc
Q 004305 284 IESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK---ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSE 360 (762)
Q Consensus 284 ie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~~~~~~---~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~s 360 (762)
|.+ +.+..+.|+.+|.. |+.+.| .+.... .++.....+-+..+...++.|.+-..+.||.+..
T Consensus 213 i~R----------~~~l~~~Y~~~r~~---~l~~~W-~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~ 278 (766)
T PF10191_consen 213 IGR----------EPQLEQYYCKCRKA---PLQRLW-QEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP 278 (766)
T ss_pred cCC----------HHHHHHHHHHHHHH---HHHHHH-HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 422 34567899999985 555555 333322 3577778888888999999999999999998641
Q ss_pred -chhchhhhHHHHHHHHHHhhcccccc-cC--CHHHHHHHHHHHHH
Q 004305 361 -DISSLAPLIDPLSTFLYDILRPKLIH-ET--NVDLLCELVDILKV 402 (762)
Q Consensus 361 -~~~~l~~~le~Lc~~LYd~lRp~Ii~-e~--~L~~Lcel~~iL~~ 402 (762)
-...+.+.|..|.-.+...+.-.+-. .+ .++.|+++-.+-..
T Consensus 279 ~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~ 324 (766)
T PF10191_consen 279 VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEH 324 (766)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 00122333334333333333333211 12 27777776655443
No 10
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.07 E-value=46 Score=35.83 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=68.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 004305 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL----VIEKQRLIEFAEAVQS 181 (762)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L----l~eq~~L~~~ae~I~~ 181 (762)
....+.+|..-......-....++|..+++++....+++...........+.|...-+.+ -.++..|.+-+..+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888888888889999999998888888888888888777776654433 3333333333333322
Q ss_pred cccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHH
Q 004305 182 KLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDEC 218 (762)
Q Consensus 182 ~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~c 218 (762)
+=.==.+|| ..+++.+|.+|+.|++.-
T Consensus 113 nG~~t~Yid----------vil~SkSfsD~IsRvtAi 139 (265)
T COG3883 113 NGTATSYID----------VILNSKSFSDLISRVTAI 139 (265)
T ss_pred cCChhHHHH----------HHHccCcHHHHHHHHHHH
Confidence 111111111 136899999999999864
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.04 E-value=1.2e+02 Score=33.28 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhC--CCCCcc
Q 004305 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFY--SPNMNV 203 (762)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~--sp~~~V 203 (762)
.|+.|-+.++..-..++.|...+..+...++...+-+.+|=..-......|..|+.+|.=.+.--.--+..+ +++..+
T Consensus 41 ~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~ 120 (297)
T KOG0810|consen 41 DVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRT 120 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchh
Confidence 556666666666777777777888888899999999999988889999999999999875554443333332 344445
Q ss_pred CCccHHHHHHHHHHHHHHhhhCCCCcc-hHHHHHHHHHHHHHHHHHhccCCC------CCCCchhhhhHHHHHHHHHHHh
Q 004305 204 GNGNFFHLLKRLDECILYVEGNPQYAE-SSVYLLKFRQLQVQAAIRSSGGSK------TSVSEGVEASLIYVRFKAAASE 276 (762)
Q Consensus 204 ~~~~F~~~L~~LD~ci~Fl~~hp~fkd-a~~Y~~rfkq~l~~a~ir~~~~~~------~~~s~~~~~aLlY~kF~~~a~~ 276 (762)
....+..+..++-+-|. +|.. -..|+.+|+.=.-|-...-.+... .-++.|-.....=+=+. ....
T Consensus 121 rrtq~~~~~kkf~~~M~------~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~-~~~~ 193 (297)
T KOG0810|consen 121 RRTQTSALSKKLKELMN------EFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ-DRGQ 193 (297)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH-Hhhh
Confidence 55666666666666665 3332 245666666544333221111000 00011110111111111 3347
Q ss_pred HHHHHHHHHhhhC-hhHHhHHHHHHHHHHHH
Q 004305 277 LKPVLEEIESRSS-KKEYVQILEECHKLYCE 306 (762)
Q Consensus 277 lk~Li~eie~R~~-~~Ey~slL~dc~~~Yf~ 306 (762)
.++.+.+++.|.+ -.....-+.|+|+.+..
T Consensus 194 ~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlD 224 (297)
T KOG0810|consen 194 AKQTLAEIQERHDEIKKLEKSIRELHQLFLD 224 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999973 34666668888888864
No 12
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.60 E-value=54 Score=35.03 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Q 004305 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAAS 195 (762)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~ 195 (762)
|...+.......+.+-.++.+....++.|..+-..+..+...+....++.+..=..|....+.+...+. .+..+
T Consensus 36 ~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~------~l~~~ 109 (264)
T PF06008_consen 36 YRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ------ELIEQ 109 (264)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 344444444444444444455555555555555555555555555555555555555555555555433 23322
Q ss_pred h---CCCCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 004305 196 F---YSPNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (762)
Q Consensus 196 L---~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fk 229 (762)
+ +.-+....+.++..+|..+..-|.-|..+ +|.
T Consensus 110 ~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r-~f~ 145 (264)
T PF06008_consen 110 VESLNENGDQLPSEDLQRALAEAQRMLEEMRKR-DFT 145 (264)
T ss_pred HHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc-cch
Confidence 2 22223456788999999999999999887 454
No 13
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=67.78 E-value=58 Score=34.96 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=67.8
Q ss_pred HHHHhhHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004305 92 NQFYNWFTD----LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (762)
Q Consensus 92 ~~F~~W~~~----le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (762)
..+..+|.. -...+-.+...+|..+.+.+......=..|+.++...-+.|.... .....+..-+..|..|..
T Consensus 177 ~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~----~~~~~~~~r~~~~~~l~~ 252 (296)
T PF13949_consen 177 SKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR----KSDQEQKERESALQRLEA 252 (296)
T ss_dssp HHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHH
Confidence 344445543 234455555566777777777777777777777666666554332 122223555666777777
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHhhCC
Q 004305 168 EKQRLIEFAEAVQSKLKYFDELENIAASFYS 198 (762)
Q Consensus 168 eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~s 198 (762)
--....++...|.+-++||+.|..+..+|..
T Consensus 253 a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~ 283 (296)
T PF13949_consen 253 AYDAYKELSSNLEEGLKFYNDLLEILNKLQQ 283 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7777789999999999999999999887743
No 14
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=63.30 E-value=70 Score=35.44 Aligned_cols=102 Identities=10% Similarity=0.185 Sum_probs=76.2
Q ss_pred HHHHhhHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004305 92 NQFYNWFTDL----ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (762)
Q Consensus 92 ~~F~~W~~~l----e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (762)
..+..++... ...+-.+...+|..+.+.|......=+.|+.++...-+.|...... ...+..-+...++|-.
T Consensus 227 ~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~r~~~l~~L~~ 302 (342)
T cd08915 227 PKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNS----NDSLDPREEALQDLEA 302 (342)
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHHHHHHH
Confidence 5666777431 2445555667788888888888888888888888888877665443 4445555566666666
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHhhC
Q 004305 168 EKQRLIEFAEAVQSKLKYFDELENIAASFY 197 (762)
Q Consensus 168 eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~ 197 (762)
--....++...+.+-++||+.|-.+..+|.
T Consensus 303 ay~~y~el~~~l~eG~~FY~dL~~~~~~l~ 332 (342)
T cd08915 303 SYKKYLELKENLNEGSKFYNDLIEKVNRLL 332 (342)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 667778999999999999999999988874
No 15
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=57.94 E-value=3.4e+02 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHhhh-ChhHHhHHHHHHH
Q 004305 262 EASLIYVRFKAAASELKPVLEEIESRS-SKKEYVQILEECH 301 (762)
Q Consensus 262 ~~aLlY~kF~~~a~~lk~Li~eie~R~-~~~Ey~slL~dc~ 301 (762)
....+|..|.. .+..|+.|++.|- ...-+..++.+|.
T Consensus 336 ~L~~~Y~~F~~---aY~~LL~Ev~RRr~~~~k~~~i~~~~~ 373 (412)
T PF04108_consen 336 QLCEFYEGFLS---AYDSLLLEVERRRAVRDKMKKIIREAN 373 (412)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888886 4777999999884 2333444444433
No 16
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=56.49 E-value=48 Score=38.80 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 004305 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENI 192 (762)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i 192 (762)
|+..++.|-. ..|+...|.+++.+...++.+..+|...-....++...|+.+-.--.++..++...+..|.|++++-.-
T Consensus 79 y~dL~~~ly~-~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqh 157 (620)
T KOG1490|consen 79 YADLLNILYD-RDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQH 157 (620)
T ss_pred hHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334444333 458899999999999999999999999999999999999988888999999999999999999998888
Q ss_pred HHhhC-----CCCC------ccCCccHHHHHHHHHH
Q 004305 193 AASFY-----SPNM------NVGNGNFFHLLKRLDE 217 (762)
Q Consensus 193 ~r~L~-----sp~~------~V~~~~F~~~L~~LD~ 217 (762)
..+|- .++. .|+..+|...+.+=|.
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv 193 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD 193 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc
Confidence 87774 2322 3667778776665544
No 17
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=55.59 E-value=2e+02 Score=27.80 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=35.8
Q ss_pred hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004305 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNEL 144 (762)
Q Consensus 91 ~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L 144 (762)
..+|..++..++..+..--.++|..+ ...+..+..++..++++-+.+..|
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~F----n~sI~sy~~i~~~i~~sq~~i~~l 91 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGF----NSSIGSYSQILSSISESQERIREL 91 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988777776654 445555556666666666666655
No 18
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=53.42 E-value=1.5e+02 Score=25.58 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004305 99 TDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL 165 (762)
Q Consensus 99 ~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L 165 (762)
+++|..+.++-+.-...|..++......+.++-.....+-..-..|..+....+.+...|.++-++|
T Consensus 2 teLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 2 TELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777778888888888888888888888887777788887877777777777766655
No 19
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=52.38 E-value=4.4e+02 Score=30.76 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=68.1
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh-------hhhHH
Q 004305 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLD----LFNELQLQHHAVAT-------KTKTL 158 (762)
Q Consensus 90 ~~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~----~l~~L~~~~~~V~~-------kT~~l 158 (762)
...+|..|.+.|..++...-...-..+.+.|....+..+.+++.+++.-. ....|..-|..|.+ ....|
T Consensus 12 ~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l 91 (473)
T PF14643_consen 12 ALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKEL 91 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999888888888888888888888888877666522 33455555667766 55566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Q 004305 159 HDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAAS 195 (762)
Q Consensus 159 ~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~ 195 (762)
.+.++.+ |+.|...+...+. +|+..|..|...
T Consensus 92 ~~~L~~~--E~~R~~~l~~~l~---~~~~~L~~ia~~ 123 (473)
T PF14643_consen 92 DEDLEEL--EKERADKLKKVLR---KYVEILEKIAHL 123 (473)
T ss_pred HHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHcc
Confidence 6655554 4444444444433 245555555443
No 20
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=51.82 E-value=1.5e+02 Score=32.89 Aligned_cols=91 Identities=12% Similarity=0.248 Sum_probs=67.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004305 105 MKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (762)
Q Consensus 105 ~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (762)
+-.+...+|..+.+.|......=+.|+.++..+-..|.... ..+...++.=......|..--....++...+.+-++
T Consensus 238 lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r---~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~ 314 (337)
T cd09234 238 LFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVR---KALSETKQKRESTISSLIASYEAYEDLLKKSQKGID 314 (337)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44455577888888888888888888888887777665442 222444555556666666666777899999999999
Q ss_pred chhhHHHHHHhhCC
Q 004305 185 YFDELENIAASFYS 198 (762)
Q Consensus 185 yF~~Le~i~r~L~s 198 (762)
||+.|..+..+|..
T Consensus 315 FY~dL~~~v~~~~~ 328 (337)
T cd09234 315 FYKKLEGNVSKLLQ 328 (337)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888743
No 21
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=50.28 E-value=5.3e+02 Score=31.05 Aligned_cols=109 Identities=15% Similarity=0.265 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004305 116 YVNTLMGRIQTCDDILRQVDGTLDLF----NELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (762)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l----~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~ 191 (762)
-+..|......||.+|.++...|..| +.++.+-..+++++++++-.=+. .|....++++.|..-.-.=+-++.
T Consensus 76 ~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~N---rq~v~s~Ls~fVdd~iVpp~lI~~ 152 (683)
T KOG1961|consen 76 NLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLEN---RQAVESKLSQFVDDLIVPPELIKT 152 (683)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHh---HHHHHHHHHHHhccccCCHHHHHH
Confidence 34567778889999999988887654 45556666666666666654433 334444444444333222222222
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcchHH
Q 004305 192 IAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSV 233 (762)
Q Consensus 192 i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~ 233 (762)
|. . .-|+..+|..-|+.|+.=+.+.+.-...|++..
T Consensus 153 I~---~---g~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a 188 (683)
T KOG1961|consen 153 IV---D---GDVNEPEFLEALEELSHKLKLVELDQSNKDAKA 188 (683)
T ss_pred HH---c---CCCCchHHHHHHHHHHHHHHhhhhhhhccchhh
Confidence 21 1 125677999999999999999998888888887
No 22
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=50.00 E-value=1.1e+02 Score=34.13 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=69.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004305 102 ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNEL---QLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEA 178 (762)
Q Consensus 102 e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L---~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~ 178 (762)
+..+-.+...+|..|.+.|......=+.|+.++...-+.|... ..........++.=....++|-.--....++...
T Consensus 248 ~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~ 327 (356)
T cd09237 248 EKQLFPEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAG 327 (356)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444455557788888888888888888888888877766433 2222223445555566666777667778899999
Q ss_pred HHhcccchhhHHHHHHhhC
Q 004305 179 VQSKLKYFDELENIAASFY 197 (762)
Q Consensus 179 I~~~L~yF~~Le~i~r~L~ 197 (762)
+..-++||+.|-.+...|.
T Consensus 328 l~~G~~FY~dL~~~~~~l~ 346 (356)
T cd09237 328 LPKGLEFYDDLLKMAKDLA 346 (356)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874
No 23
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=47.81 E-value=1.5e+02 Score=36.36 Aligned_cols=109 Identities=17% Similarity=0.304 Sum_probs=60.0
Q ss_pred hhhcChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHH
Q 004305 86 AVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDL----FNELQLQHHAVATKTKTLHDA 161 (762)
Q Consensus 86 ~~i~~~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~----l~~L~~~~~~V~~kT~~l~~~ 161 (762)
..+..+.++.+||.+=... +..|....+..|.++.++...++. .++++....... ..-++.+.
T Consensus 33 a~~~~~~qi~~Wi~k~k~~------------l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~-~~~dl~e~ 99 (683)
T PF08580_consen 33 ALSGAAEQILDWIQKAKDV------------LYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIAN-SLFDLIEE 99 (683)
T ss_pred hhHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccc-cHHHHHHH
Confidence 4455678899998764333 233333333333333333333332 223332233333 57789999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHh
Q 004305 162 CDRLVI-EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYV 222 (762)
Q Consensus 162 ce~Ll~-eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl 222 (762)
|.+|+. =+..|..+-+.+.--+.|.+-.+.++ ..+-..||+|+.-+
T Consensus 100 vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vl---------------g~l~~EIe~~~~~v 146 (683)
T PF08580_consen 100 VSQMELDVKKTLISVKKQVEIAMEWEELWNDVL---------------GDLDNEIEECIRLV 146 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 999987 44455666666666666655544443 34566788887654
No 24
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.94 E-value=4.2e+02 Score=31.76 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=73.9
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004305 90 NTNQFYNWFTDLELAMKSETEEKYR---HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (762)
Q Consensus 90 ~~~~F~~W~~~le~~~~~~~~~~y~---~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (762)
+..+.-.|.+.|++.+.+-..+.+. ............+++++.++....+.++++.+. .+ .+.+...-....
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~--~~---~~~i~~~l~~a~ 82 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQS--EI---ENEIQPQLRDAA 82 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hc---cchhHHHHHHHH
Confidence 3456667777777766655554442 233345555667777777777777777555433 01 222333333333
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhh--CCCCcchHHHHH
Q 004305 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEG--NPQYAESSVYLL 236 (762)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~--hp~fkda~~Y~~ 236 (762)
.+...|..-.+....-+.--..|..|-..|.+-...+...+|......|++.=.-|.. .+.+.+..+|..
T Consensus 83 ~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~ 154 (593)
T PF06248_consen 83 EELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKL 154 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHH
Confidence 3333333333333333333334444444443322335667777655555555555554 467777777753
No 25
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=45.23 E-value=1.8e+02 Score=25.56 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=13.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004305 152 ATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKY 185 (762)
Q Consensus 152 ~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y 185 (762)
..+++.+-+..+.-++.-..+.+-+.++++.+++
T Consensus 53 l~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 53 LHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444333
No 26
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=43.90 E-value=2.1e+02 Score=24.49 Aligned_cols=59 Identities=10% Similarity=0.337 Sum_probs=33.5
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004305 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV 151 (762)
Q Consensus 90 ~~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V 151 (762)
....|..|..+.+..+..... -.-++.+......+..+..++...-..++.+...-..+
T Consensus 9 ~~~~l~~Wl~~~e~~l~~~~~---~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 9 EADELLDWLQETEAKLSSSEP---GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHCSCTH---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 357888999999998833322 12234444444455555555555555555555444444
No 27
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.26 E-value=7.4e+02 Score=30.72 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCC
Q 004305 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGN 205 (762)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~ 205 (762)
+...+-.+.+.=++.+.++.+.-..+.++...|.+.+++..+.|..|.+-++.+-..+. -..|..+..-
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----------~~~P~LS~AE 634 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN-----------SQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccCCCCCHHH
Confidence 34555566667788888888889999999999999999999999888877666543321 1347666666
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 004305 206 GNFFHLLKRLDECILYVE 223 (762)
Q Consensus 206 ~~F~~~L~~LD~ci~Fl~ 223 (762)
..|..-|+++.+-+.-|.
T Consensus 635 r~~~~EL~~~~~~l~~l~ 652 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888888875543
No 28
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=43.10 E-value=1.4e+02 Score=33.29 Aligned_cols=85 Identities=12% Similarity=0.221 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 004305 109 TEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDE 188 (762)
Q Consensus 109 ~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~ 188 (762)
...+|..+.+.|......=+.|+.++...-+.|..+... ...++.=+..-.+|-.--....++...+.+-++||+.
T Consensus 245 eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~d 320 (339)
T cd09238 245 ELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDV----EGWRAATESHATQIRAAVAKYRELREGMEEGLRFYSG 320 (339)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 346688888888888888888888877777766553321 1111111222233333334556888899999999999
Q ss_pred HHHHHHhhC
Q 004305 189 LENIAASFY 197 (762)
Q Consensus 189 Le~i~r~L~ 197 (762)
|-.+..+|.
T Consensus 321 L~~~~~~l~ 329 (339)
T cd09238 321 FQEAVRRLK 329 (339)
T ss_pred HHHHHHHHH
Confidence 998888773
No 29
>COG1084 Predicted GTPase [General function prediction only]
Probab=42.00 E-value=1.9e+02 Score=32.37 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004305 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (762)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~ 191 (762)
=|+...|-|-+ .+++..-|..++.+-..++.+...|-.-.....+..++.+=.=+--.|...+.+.|+..|.|-...-.
T Consensus 78 FY~eLidvl~d-~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~ 156 (346)
T COG1084 78 FYRELIDVLVD-IDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARD 156 (346)
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555555443 34677778888888999999999998888777776654443334457888888888888888888888
Q ss_pred HHHhhC
Q 004305 192 IAASFY 197 (762)
Q Consensus 192 i~r~L~ 197 (762)
.+++|-
T Consensus 157 ~l~~LP 162 (346)
T COG1084 157 HLKKLP 162 (346)
T ss_pred HHhcCC
Confidence 888873
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.65 E-value=2.6e+02 Score=32.37 Aligned_cols=118 Identities=12% Similarity=0.164 Sum_probs=77.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhh
Q 004305 111 EKYRHYVN-TLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKY-FDE 188 (762)
Q Consensus 111 ~~y~~y~~-~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y-F~~ 188 (762)
+.+..|.+ +|......+...+...++.-...+++.+....|+.+-..++..-+++-+|.+.+.+.-..+.+++.- =..
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444555 8888888888899888888888888888888888888888888888877777777666666655442 233
Q ss_pred HHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 004305 189 LENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (762)
Q Consensus 189 Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fk 229 (762)
|+.+.++++.. ..-......++=+.|-+=|-||+.-..+|
T Consensus 419 l~~~~e~~~~~-~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 419 LKELEEREKEA-LGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 33333333221 00123344455566666666666665554
No 31
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.38 E-value=4.1e+02 Score=27.28 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=87.1
Q ss_pred hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 004305 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ 170 (762)
Q Consensus 91 ~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~ 170 (762)
...--+|....+..+....+.--+.++.....+......+-.+++.....+..|..++.....+...+....+.|.....
T Consensus 64 ~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 64 EEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999998775554
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHH
Q 004305 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECIL 220 (762)
Q Consensus 171 ~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~ 220 (762)
-......|... +.+-+..-...+|-.|=.+|+..=.
T Consensus 144 -~a~a~~~~~~~-------------~~~~~~~~a~~~~er~e~ki~~~ea 179 (221)
T PF04012_consen 144 -AAKAQKKVNEA-------------LASFSVSSAMDSFERMEEKIEEMEA 179 (221)
T ss_pred -HHHHHHHHHHH-------------hccCCccchHHHHHHHHHHHHHHHH
Confidence 33333333332 2221111124556666666666443
No 32
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=40.75 E-value=2.4e+02 Score=31.57 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=64.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004305 105 MKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (762)
Q Consensus 105 ~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (762)
+-.+...+|..+.+.|......=+.|+.++...-+.|...... ...++.-..+..+|-.--....++...+.+-++
T Consensus 255 lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~lq~L~~ay~~y~el~~nl~eG~k 330 (353)
T cd09236 255 LFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKG----DPATKERERALQSLDLAYFKYKEIVSNLDEGRK 330 (353)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456788888888888888888888888877777443222 233444455566666666777899999999999
Q ss_pred chhhHHHHHHhhC
Q 004305 185 YFDELENIAASFY 197 (762)
Q Consensus 185 yF~~Le~i~r~L~ 197 (762)
||+.|-.+..+|.
T Consensus 331 FY~dL~~~~~~~~ 343 (353)
T cd09236 331 FYNDLAKILSQFR 343 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887774
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.54 E-value=3.3e+02 Score=32.56 Aligned_cols=26 Identities=8% Similarity=0.223 Sum_probs=13.5
Q ss_pred hhCCCCCccCCccHHHHHHHHHHHHHHhh
Q 004305 195 SFYSPNMNVGNGNFFHLLKRLDECILYVE 223 (762)
Q Consensus 195 ~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~ 223 (762)
+-+-||. .++|..++..+..-|.-+.
T Consensus 436 k~~lpgi---p~~y~~~~~~~~~~i~~l~ 461 (569)
T PRK04778 436 KSNLPGL---PEDYLEMFFEVSDEIEALA 461 (569)
T ss_pred HcCCCCC---cHHHHHHHHHHHHHHHHHH
Confidence 3345554 5556666655555554443
No 34
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=39.05 E-value=2.5e+02 Score=27.38 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=14.8
Q ss_pred ChHHHHhhHHHHHHHHhhhh
Q 004305 90 NTNQFYNWFTDLELAMKSET 109 (762)
Q Consensus 90 ~~~~F~~W~~~le~~~~~~~ 109 (762)
..+.+..|..+.+..+.+..
T Consensus 8 ~~~~l~~Wl~~~e~~l~~~~ 27 (213)
T cd00176 8 DADELEAWLSEKEELLSSTD 27 (213)
T ss_pred hHHHHHHHHHHHHHHhcCcc
Confidence 46788889999887775543
No 35
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=36.47 E-value=50 Score=31.45 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=35.0
Q ss_pred hhhcC-hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004305 86 AVLVN-TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDR 164 (762)
Q Consensus 86 ~~i~~-~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~ 164 (762)
.++++ -.++-.+...+..++.+=--..|..|++ |.++....++. ++.+..-+..+...-..|.+.-..-.+..+.
T Consensus 26 ~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~-Ls~~L~g~~~~---i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~ 101 (133)
T PF06148_consen 26 VSLEDLRKDLRSYSKELKNELIELINDDYADFVS-LSTNLVGMDEK---IEELRKPLSQFREEVESVRDELDNTQEEIED 101 (133)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 4667778888888888887788888776 66665555554 4444555556666666677777777788888
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 004305 165 LVIEKQRLIEFAEAVQSKLKYFDELENIA 193 (762)
Q Consensus 165 Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~ 193 (762)
.+.+++++.+.-..++..+.+.+.++.+-
T Consensus 102 ~l~~~~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 102 KLEERKELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp HHHHHHHHHHHHHT-SSSSHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 88888888887777776666666665543
No 36
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=35.60 E-value=4.8e+02 Score=27.88 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=58.1
Q ss_pred HHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004305 94 FYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLI 173 (762)
Q Consensus 94 F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~ 173 (762)
-.+|-.+++.+ ++.|..+..+++.+- ..|-... ..+..|-..-..|...-+-|+..-+-++..|+.|+
T Consensus 80 iNkWs~el~~Q-----e~vF~~q~~qvNaWD----r~LI~ng---ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE 147 (254)
T KOG2196|consen 80 INKWSLELEEQ-----ERVFLQQATQVNAWD----RTLIENG---EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELE 147 (254)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHhHHH----HHHHhCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34788888764 456777777766554 4442211 12334444445555556666666676776666666
Q ss_pred HHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHH
Q 004305 174 EFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECIL 220 (762)
Q Consensus 174 ~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~ 220 (762)
.+-..+++++.-+.-.-. .+...|.+..-..|..+||+-|.
T Consensus 148 ~~L~~lE~k~~~~~g~~~------~~~~D~eR~qty~~a~nidsqLk 188 (254)
T KOG2196|consen 148 DLLDPLETKLELQSGHTY------LSRADVEREQTYKMAENIDSQLK 188 (254)
T ss_pred HHHHHHHHHHhccccchh------hhhhhHHHHHHHHHHHHHHHHHH
Confidence 665555544433221110 12233455555556666666553
No 37
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=33.65 E-value=3.8e+02 Score=24.60 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004305 110 EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRL 172 (762)
Q Consensus 110 ~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L 172 (762)
.+..+.|.......-.++..|-..++++...|.+|...-......+....... +++.|=+++
T Consensus 7 ~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~ 68 (101)
T PF07303_consen 7 SEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHH
Confidence 34566777777777778888888888888888888888888888888777777 777776666
No 38
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=32.79 E-value=4.4e+02 Score=25.06 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcccchhhHH---------HHHHhhCCCCCccCCccHHHHHHH
Q 004305 169 KQRLIEFAEAVQSKLKYFDELE---------NIAASFYSPNMNVGNGNFFHLLKR 214 (762)
Q Consensus 169 q~~L~~~ae~I~~~L~yF~~Le---------~i~r~L~sp~~~V~~~~F~~~L~~ 214 (762)
+.....+......-+.-|..+. .|.|++.-.+..++.+....++..
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~ 141 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLES 141 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHc
Confidence 3444556666666666676666 444555433334566666666654
No 39
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.16 E-value=3e+02 Score=24.88 Aligned_cols=7 Identities=14% Similarity=0.506 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004305 174 EFAEAVQ 180 (762)
Q Consensus 174 ~~ae~I~ 180 (762)
.++.+|.
T Consensus 57 ~~~~~i~ 63 (117)
T smart00503 57 RLAKEIR 63 (117)
T ss_pred HHHHHHH
Confidence 3333333
No 40
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=31.83 E-value=92 Score=27.81 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHH
Q 004305 366 APLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRA 438 (762)
Q Consensus 366 ~~~le~Lc~~LYd~lRp~Ii~e~~L~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRa 438 (762)
...|+.+.+.+=++|||-.| |.-+.++|..++.+-...++.+....-..+|..-|+..|++=|||+
T Consensus 5 k~nL~af~~yi~ktl~P~yI-------l~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqa 70 (89)
T cd08816 5 KRNLQRFRDYIKKILRPSYI-------LGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQA 70 (89)
T ss_pred HHHHHHHHHHHHHhhchHHH-------HHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHH
Confidence 35667777778888999654 7788899998764443332223333334567777888999999986
No 41
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.54 E-value=5.7e+02 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004305 113 YRHYVNTLMGRIQTCDDILRQ 133 (762)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~ 133 (762)
-+.|+++|..++.+.+.+...
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~R 39 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQR 39 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 456777777777666666543
No 42
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=31.22 E-value=4.6e+02 Score=24.84 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHH
Q 004305 132 RQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHL 211 (762)
Q Consensus 132 ~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~ 211 (762)
..+..+...=..|..+-..+...|..|..++.+.+ .+++.+...|+=.-.++.-++.+...
T Consensus 40 ~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~-------~~~~~~~~~LKEiGDveNWa~~iE~D------------ 100 (121)
T PF06320_consen 40 SRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWL-------KLVDSFNDALKEIGDVENWAEMIERD------------ 100 (121)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhccHHHHHHHHHHH------------
Confidence 33444444444455555555555555555555554 77777777777666777666666543
Q ss_pred HHHHHHHHHHhhhC
Q 004305 212 LKRLDECILYVEGN 225 (762)
Q Consensus 212 L~~LD~ci~Fl~~h 225 (762)
|..|.++|.|+...
T Consensus 101 l~~i~~~L~~v~~~ 114 (121)
T PF06320_consen 101 LRVIEETLRYVYEG 114 (121)
T ss_pred HHHHHHHHHHHHhh
Confidence 66788888887653
No 43
>PHA03386 P10 fibrous body protein; Provisional
Probab=31.16 E-value=2.3e+02 Score=25.75 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004305 127 CDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (762)
Q Consensus 127 ~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (762)
+-.|++++.+.-+.++.|+.+-..|.+++..|....++| ..+......|++.|.
T Consensus 7 Ll~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL----~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 7 LTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQL----TELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHH----HHHHHHHHHHHHhcC
Confidence 345677888888888888888888888888888888877 344555555555554
No 44
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.85 E-value=1.8e+02 Score=30.41 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004305 119 TLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (762)
Q Consensus 119 ~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae 177 (762)
......+..+.+-+++......++..+.+...+..+...+....++|++|-.+|.+-.+
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34445555666667777777777777778888888888888888888877766665544
No 45
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=29.86 E-value=3.8e+02 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhh
Q 004305 162 CDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEG 224 (762)
Q Consensus 162 ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~-V~~~~F~~~L~~LD~ci~Fl~~ 224 (762)
.+....+-..++.-++.|... |.+.|+..... +.++++..++..+|+.+++++.
T Consensus 45 ~~~~~~~I~~lE~eaD~i~~~---------i~~~L~~~fitP~dReDi~~L~~~lD~I~D~i~~ 99 (216)
T TIGR00153 45 DEELRKEIIEIEHEADEIKRE---------IRLNLEKGAFLPNDRRDLLELAELLDEILDSLEH 99 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHhCcccccCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777654 55677665443 7899999999999999999874
No 46
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=29.72 E-value=4.6e+02 Score=29.12 Aligned_cols=83 Identities=11% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004305 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (762)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~ 191 (762)
+|..+.++|......=+.|+.++..+-..|.... .+...++.=.....+|-.--....++...+.+-++||+.|-.
T Consensus 248 ~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~----~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~ 323 (339)
T cd09235 248 VYGPLQKQVQESLSRQESLLANIQVAHQEFSKEK----QSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTE 323 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4788888888888888888887777766663321 112222333445555555556677899999999999999999
Q ss_pred HHHhhCC
Q 004305 192 IAASFYS 198 (762)
Q Consensus 192 i~r~L~s 198 (762)
+..+|..
T Consensus 324 ~~~~~~~ 330 (339)
T cd09235 324 ILVKFQN 330 (339)
T ss_pred HHHHHHH
Confidence 8887743
No 47
>smart00150 SPEC Spectrin repeats.
Probab=29.30 E-value=3.5e+02 Score=22.88 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=47.4
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHH
Q 004305 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVAT----KTKTLHDACDRL 165 (762)
Q Consensus 90 ~~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~----kT~~l~~~ce~L 165 (762)
....+.+|....+..+.+... -.-.+.+....+.++.+..+++.....++.+...-..+.+ ....+...++.|
T Consensus 6 ~~~~l~~Wl~~~e~~l~~~~~---~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l 82 (101)
T smart00150 6 DADELEAWLSEKEALLASEDL---GKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEEL 82 (101)
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 457788999999866544222 1234445555555555555555554444444444333332 233455555555
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 004305 166 VIEKQRLIEFAEAVQSKL 183 (762)
Q Consensus 166 l~eq~~L~~~ae~I~~~L 183 (762)
-..-..|...++.-...|
T Consensus 83 ~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 83 NERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555555555444433
No 48
>PHA03332 membrane glycoprotein; Provisional
Probab=28.95 E-value=3.9e+02 Score=34.22 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=48.5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhCCCCCcc--CCccHHHHHHHHHHHH--------HHhhhCCCCcc-hHHHHHHHHHH
Q 004305 174 EFAEAVQSKLKYFDELENIAASFYSPNMNV--GNGNFFHLLKRLDECI--------LYVEGNPQYAE-SSVYLLKFRQL 241 (762)
Q Consensus 174 ~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V--~~~~F~~~L~~LD~ci--------~Fl~~hp~fkd-a~~Y~~rfkq~ 241 (762)
+-.++....-.||.+|...+..+-...... .-+.|...|..|+..- -|++.||+|.- ..+|-+-|++-
T Consensus 973 ~~ie~~~aaalyYQQlnsltnqv~~saskL~~qv~myrTCl~Sl~aG~L~GCP~~~pfl~dnpdy~mv~SVyga~Yrg~ 1051 (1328)
T PHA03332 973 ERIEEVMAAALYYQQLNSLTNQVTQSASKLGYQVGMYRTCLKSLLAGTLAGCPTDAPFLRDNPDYTMVKSVYGALYRGQ 1051 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCCCChhhhcCCcchhhhhhhhhhcccc
Confidence 334445566779999999998874432222 3367999999999853 58999999974 55677777765
No 49
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.45 E-value=6.9e+02 Score=26.68 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHH------HHHH--HHHHHH
Q 004305 111 EKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATK--------TKTLHDACDR------LVIE--KQRLIE 174 (762)
Q Consensus 111 ~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~k--------T~~l~~~ce~------Ll~e--q~~L~~ 174 (762)
..-+.|.+.|.....+.+.+.+.+-.-...+.+...+|..+-.- +..|+..|.. .+.+ ......
T Consensus 57 ~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~ 136 (243)
T cd07666 57 TEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQ 136 (243)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466888888888888888876554433334444444443322 2222222222 2222 122346
Q ss_pred HHHHHHhcccchhhHHHHHH
Q 004305 175 FAEAVQSKLKYFDELENIAA 194 (762)
Q Consensus 175 ~ae~I~~~L~yF~~Le~i~r 194 (762)
+++.|.+++.|...+-.+.+
T Consensus 137 f~~~Lkeyv~y~~slK~vlk 156 (243)
T cd07666 137 LLPVIHEYVLYSETLMGVIK 156 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765543
No 50
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=28.42 E-value=3.7e+02 Score=26.78 Aligned_cols=34 Identities=3% Similarity=0.162 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004305 133 QVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (762)
Q Consensus 133 ~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (762)
.+..+...++.+...-..+.+.+......++.+.
T Consensus 136 ~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~ 169 (213)
T PF00015_consen 136 SLEEIAESVEEISDSIEEISESAEEQSESIEQIN 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444
No 51
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=2.7e+02 Score=28.93 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=27.7
Q ss_pred ccCCchHHHHHH-HHHhhhhccChhhhhHHHHHHHH
Q 004305 483 KTWYPPLEKTVS-CLSKLYQCLEQAVFTGLAQEAVE 517 (762)
Q Consensus 483 ~~wYPpl~ktL~-lLSkly~~v~~~VF~~LA~eaV~ 517 (762)
.+|--|.--.|. .||.+|.||+++||-.+-+++.|
T Consensus 149 ktw~e~~~~sl~Nflst~~qc~p~pvi~~~~~e~ar 184 (241)
T KOG1333|consen 149 KTWIEIYYVSLHNFLSTLFQCMPVPVILNFDAECQR 184 (241)
T ss_pred hhhhHhhhhhHHhHHHHHHHcCCcceeehHHHHHhc
Confidence 466666666677 89999999999999877777644
No 52
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.58 E-value=7.2e+02 Score=25.88 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004305 111 EKYRHYVNTLMGRIQTCDDILRQVDG---------------TLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF 175 (762)
Q Consensus 111 ~~y~~y~~~L~~~~~~~d~ll~~~~~---------------~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ 175 (762)
..++.|..+|......+..-+..+.. +-..|..|...|.....+.-.+..+|.+|-.+-.++..-
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655555555533222 334677899999999999999999999999888888887
Q ss_pred HHHHHhcc
Q 004305 176 AEAVQSKL 183 (762)
Q Consensus 176 ae~I~~~L 183 (762)
+.+-..+.
T Consensus 212 ~~~~~~~~ 219 (221)
T PF05700_consen 212 AAELKENQ 219 (221)
T ss_pred HHHHhccc
Confidence 77666543
No 53
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=1.1e+03 Score=28.21 Aligned_cols=128 Identities=17% Similarity=0.249 Sum_probs=77.0
Q ss_pred hhhcCh-HHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHH
Q 004305 86 AVLVNT-NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLF-NELQLQHHAVATKTKTLHDACD 163 (762)
Q Consensus 86 ~~i~~~-~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l-~~L~~~~~~V~~kT~~l~~~ce 163 (762)
.++++. ++.--++..+..+|.+=-..-|..+++ |+...-..|+-+.++..=+..+ +++..-...|.+.-..++++|+
T Consensus 46 v~letLrddLrlylksl~~aMieLIN~DYADFVn-LStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~s 124 (705)
T KOG2307|consen 46 VDLETLRDDLRLYLKSLQNAMIELINDDYADFVN-LSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCS 124 (705)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344453 444457778888887766666665554 3333334444444433333222 2233346677778888887776
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHH
Q 004305 164 RLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECI 219 (762)
Q Consensus 164 ~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci 219 (762)
+ +..+.+.-..|....+.+..+|.+.+.|.+|...= +..=..+|+||---+
T Consensus 125 e----~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~-q~~~a~sLERiAlel 175 (705)
T KOG2307|consen 125 E----LCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKE-QQDGATSLERIALEL 175 (705)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-cccccchHHHHHHHH
Confidence 5 45677778888888999999999999999874421 111122366665443
No 54
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.90 E-value=7e+02 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHHHhhh
Q 004305 207 NFFHLLKRLDECILYVEG 224 (762)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~ 224 (762)
....+..-|++.+.|+.+
T Consensus 105 ~~~~l~~~L~ey~~~~~s 122 (236)
T PF09325_consen 105 EEETLGEPLREYLRYIES 122 (236)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344455566666666654
No 55
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=26.76 E-value=2.2e+02 Score=29.03 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhh
Q 004305 161 ACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEG 224 (762)
Q Consensus 161 ~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~-V~~~~F~~~L~~LD~ci~Fl~~ 224 (762)
..+.++.+-..++.-|+.|... |...|+..... +.++++..+...+|+.+++++.
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~---------i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~ 96 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKRE---------IREELYKSFITPFDREDILRLISSLDDIADYIED 96 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556777777777654 45566554343 6788999999999999999973
No 56
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=26.57 E-value=4.3e+02 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=11.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhhHHHHHHhhCCCC
Q 004305 149 HAVATKTKTLHDACDRLVIEKQRLIEFAEAV-QSKLKYFDELENIAASFYSPN 200 (762)
Q Consensus 149 ~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I-~~~L~yF~~Le~i~r~L~sp~ 200 (762)
..+..+-..|...+=+++..+.-+....-.| .+-=.--..|+.+.+.|+.|+
T Consensus 75 ~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p~ 127 (141)
T PF13874_consen 75 EEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAPA 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 3333333444444444444444333333333 222223355667777777774
No 57
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=26.14 E-value=8e+02 Score=26.16 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhh
Q 004305 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEG 224 (762)
Q Consensus 171 ~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~ 224 (762)
.+..+.+.+.+-...|.....- .-..|+.-+..-+|-+-+..-|.|..+|..
T Consensus 136 ~l~~l~~~v~~l~~~~~~~~~~--~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~ 187 (256)
T PF14932_consen 136 ELNQLLGEVSKLASELAHAHSG--QQQNPPVFLSQMPLEQYLSQEEQFTKYLTS 187 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccCCCCchhhhCCHHHHHHHHHHHHHHHHH
Confidence 4555555555555555442111 112333334555666666666666666553
No 58
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.92 E-value=6.1e+02 Score=27.67 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc
Q 004305 114 RHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL--------KY 185 (762)
Q Consensus 114 ~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L--------~y 185 (762)
|.....|....++..+=-..|++....|..|+++|-.=+=.--+=+-+=..-=+|-++|..+.|.++++| +|
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 4455667777777777777888888899999999864221111111111122345567777777777777 57
Q ss_pred hhhHHHHHHhhC
Q 004305 186 FDELENIAASFY 197 (762)
Q Consensus 186 F~~Le~i~r~L~ 197 (762)
|-.++--.+||.
T Consensus 151 FvDINiQN~KLE 162 (305)
T PF15290_consen 151 FVDINIQNKKLE 162 (305)
T ss_pred HhhhhhhHhHHH
Confidence 777776666663
No 59
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=25.33 E-value=6.7e+02 Score=24.76 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004305 124 IQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (762)
Q Consensus 124 ~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (762)
.+......+..+.+++.+++....-..+.++.....+....|-
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~ 48 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLH 48 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444445555555555555555555555555555555444
No 60
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.27 E-value=4.5e+02 Score=22.72 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004305 125 QTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (762)
Q Consensus 125 ~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (762)
+..+.+-.++..+++.+..|+..-....++-.++.+.-+.|-.+-.+|..=.....++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777776666666555544443
No 61
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.70 E-value=7.7e+02 Score=27.88 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=38.6
Q ss_pred hhhhhcChHHHHhhHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004305 84 IEAVLVNTNQFYNWFTDLELAMK------SETEEKYRHYVNTLMGRIQTCDDILRQVDGTLD 139 (762)
Q Consensus 84 ~~~~i~~~~~F~~W~~~le~~~~------~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~ 139 (762)
+..++++.-+=..|=-++|+-.- ..-..-+|.|+++...+...+...+..+..-|+
T Consensus 183 ~~~i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~ 244 (359)
T PF10498_consen 183 PEEIIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLD 244 (359)
T ss_pred hhhcccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34566777777789888887541 112256888899888888888888766555544
No 62
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=23.66 E-value=4.6e+02 Score=23.73 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004305 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIE 174 (762)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~ 174 (762)
....+..+..+-+..=..|..+|.....+-+.|++..+.|++.+.+...
T Consensus 68 qma~lftqaqsfltqrqql~nqyqqlvs~~s~lq~n~nalmk~kekitm 116 (125)
T PRK15352 68 QMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQKNFNALMKKKEKITM 116 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 4455667777777788888899999999999999999999977766544
No 63
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=23.50 E-value=8.9e+02 Score=28.84 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhhC-hhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHh
Q 004305 268 VRFKAAASELKPVLEEIESRSS-KKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFS 324 (762)
Q Consensus 268 ~kF~~~a~~lk~Li~eie~R~~-~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~~~~ 324 (762)
+|||+.-..+..-+.+.+++.. .-+|..-+...- +=.-...|-+..++....
T Consensus 509 NRYRs~~~~v~~~l~eAe~lF~~~~dY~~s~eia~-----qaLE~vEpGv~~ki~~~y 561 (570)
T COG4477 509 NRYRSRNAEVAKSLNEAERLFENAFDYDASFEIAS-----QALEKVEPGVTKKIEESY 561 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHH-----HHHhhhCCcHHHHHHHHH
Confidence 6899888888888888888873 456665443322 122334455555554433
No 64
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=22.82 E-value=2.5e+02 Score=24.25 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHH
Q 004305 113 YRHYVNTLMGRIQTCDDILRQVDGT-LDLFNELQLQHHAVATKTKTLHDAC 162 (762)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~-l~~l~~L~~~~~~V~~kT~~l~~~c 162 (762)
-+.|+.++.......-.-+++-+.| |..|++|...+..++.-+++|+-+|
T Consensus 15 lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 15 LKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444 5688999999999999999999877
No 65
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.43 E-value=1.1e+03 Score=27.50 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 004305 96 NWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ 170 (762)
Q Consensus 96 ~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~ 170 (762)
..+..++.+..+.+.+.|..-+...+......+.+...-..+...+..++...+.++++-+...+.-..|.+.|.
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345555554444444444444444444333334444444444444555555555555555555554444444443
No 66
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=21.71 E-value=4.4e+02 Score=28.48 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 004305 297 LEECHKLYCEQRLSLVKG 314 (762)
Q Consensus 297 L~dc~~~Yf~~R~~LL~p 314 (762)
+..-..+||.--.+.|..
T Consensus 302 lhnAiaAYfsGNak~LE~ 319 (341)
T KOG3876|consen 302 LHNAIAAYFSGNAKQLEQ 319 (341)
T ss_pred HHHHHHHHhcccHHHHHH
Confidence 444556677766655544
No 67
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=20.96 E-value=9.5e+02 Score=24.95 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 004305 148 HHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYF 186 (762)
Q Consensus 148 ~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 186 (762)
+.....+..++++++...-+-++.+..-.+.+-..|.||
T Consensus 46 f~~l~~k~p~l~~af~~~aet~k~l~kng~~Ll~al~~f 84 (201)
T cd07660 46 FADLSQKSPELQEEFTYNAETQKLLCKNGETLLGALNFF 84 (201)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444455555544444444444444444444443
No 68
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=1.2e+03 Score=27.33 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=78.1
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCC--------C---cccchhcccccc
Q 004305 602 PRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQ--------N---QNVDSLMAKPLK 670 (762)
Q Consensus 602 P~v~e~~~Dsk~eld~~Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~--------~---~~~~~~~~~~l~ 670 (762)
+.......+.++-+-......-++|-..+...++.||..|+......+.+....+. + +++-....++..
T Consensus 78 y~p~~~g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~ 157 (460)
T KOG3771|consen 78 YEPDWPGRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEA 157 (460)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChh
Confidence 33355667777777777777778888888888999999887655444322111100 0 000000011111
Q ss_pred cc--cccChhHHHHHHHHHHHHHHhhcHHHHHHHHhhcCChhHHHHhHH---HHHHHHHHHHHHHHHHHHhcCCh
Q 004305 671 DQ--AFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFK---PVKTNIVEAHIQVQSLLKAEYMP 740 (762)
Q Consensus 671 ~q--~fa~p~~i~~~~~~~~~~i~~~lp~~~~~m~lYL~d~~t~~iL~~---pI~~~i~~~~~q~~~~~~~~Y~~ 740 (762)
+- +-..-.+...++..+...|.++||.++..=-.|+.+ +...|+. -+..-+-..|.+|++++.+.++.
T Consensus 158 k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp--~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 158 KLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVP--TFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 111113467888899999999999999887777763 3333332 22223334477777777654433
No 69
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.71 E-value=9.1e+02 Score=24.64 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=54.8
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004305 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEK 169 (762)
Q Consensus 90 ~~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq 169 (762)
+..+.+...+.-+.....+....|..|.+.+......-+.++.+...+.+.+..-..+......+...=.+..+.+..+-
T Consensus 93 ~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei 172 (236)
T PF09325_consen 93 KISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEI 172 (236)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 34444444555455555666677888888888777777777777777777777777777666555222234444444444
Q ss_pred HHHHHHHHHHH
Q 004305 170 QRLIEFAEAVQ 180 (762)
Q Consensus 170 ~~L~~~ae~I~ 180 (762)
..++.-++.+.
T Consensus 173 ~~~~~~~~~~~ 183 (236)
T PF09325_consen 173 EEAERRVEQAK 183 (236)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 70
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=20.41 E-value=7e+02 Score=24.11 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHH
Q 004305 93 QFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKT-----KTLHDACDRLVI 167 (762)
Q Consensus 93 ~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT-----~~l~~~ce~Ll~ 167 (762)
++..|....+..+....... -.+.+.....++..+...+...-..++.+......+.... ..+...++.+-.
T Consensus 117 ~l~~wl~~~e~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 193 (213)
T cd00176 117 DLEQWLEEKEAALASEDLGK---DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNE 193 (213)
T ss_pred HHHHHHHHHHHHhcCcccCC---CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 35567777766655433222 3344444555555555444444444444444333333222 233444444444
Q ss_pred HHHHHHHHHHHH
Q 004305 168 EKQRLIEFAEAV 179 (762)
Q Consensus 168 eq~~L~~~ae~I 179 (762)
.-.++.......
T Consensus 194 ~~~~l~~~~~~~ 205 (213)
T cd00176 194 RWEELLELAEER 205 (213)
T ss_pred HHHHHHHHHHHH
Confidence 444443443333
No 71
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.29 E-value=6.6e+02 Score=30.02 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHhhhCCC
Q 004305 207 NFFHLLKRLDECILYVEGNPQ 227 (762)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~ 227 (762)
++..++..+..=+++++.||+
T Consensus 508 ~l~~~~r~lr~l~~~L~~~P~ 528 (547)
T PRK10807 508 RLDQVLRELQPVLKTLNEKSN 528 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 355678888888899999995
No 72
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=20.25 E-value=1e+03 Score=25.01 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=66.9
Q ss_pred hHHHHhhHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-H
Q 004305 91 TNQFYNWFTDL-ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI-E 168 (762)
Q Consensus 91 ~~~F~~W~~~l-e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~-e 168 (762)
.+.|..|...+ +.++.. +......|...+-.+|..-....... =.+|...-..+.+.+......-..+++ +
T Consensus 112 ~~~fl~pL~~~l~~dik~-----i~k~RKkLe~rRLdyD~~k~k~~k~~--eeEl~~Ae~kfe~s~E~a~~~M~~il~~e 184 (223)
T cd07592 112 KQNFLDPLQQLQDKDLKE-----INHHRKKLEGRRLDYDYKKRKQGKGP--DEELKQAEEKFEESKELAENSMFNLLEND 184 (223)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 57788777655 555544 55666777777777776665543321 255655666666666666666667777 5
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHhh
Q 004305 169 KQRLIEFAEAVQSKLKYFDELENIAASF 196 (762)
Q Consensus 169 q~~L~~~ae~I~~~L~yF~~Le~i~r~L 196 (762)
-..+..+.+=|..-|.||..--.+...|
T Consensus 185 ~e~~~~L~~lveAQl~Yh~~~~e~L~~l 212 (223)
T cd07592 185 VEQVSQLSALVEAQLDYHRQSAEILEEL 212 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999998866666555
No 73
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.17 E-value=6.5e+02 Score=28.04 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=27.1
Q ss_pred hhhcChHHHHh-hHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHH
Q 004305 86 AVLVNTNQFYN-WFTDLELAMKS-----ETEEKYRHYVNTLMGRIQTCDDIL 131 (762)
Q Consensus 86 ~~i~~~~~F~~-W~~~le~~~~~-----~~~~~y~~y~~~L~~~~~~~d~ll 131 (762)
.++.+..+||+ |....|+...+ +-...|-..++..-..+.+.+.+.
T Consensus 225 ~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~ 276 (320)
T TIGR01834 225 KPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIV 276 (320)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899997 66666655433 222344445555555555555555
No 74
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.10 E-value=6.2e+02 Score=25.13 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=57.0
Q ss_pred hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 004305 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ 170 (762)
Q Consensus 91 ~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~ 170 (762)
.++-...+++++.++.. .-..+..-.+....+...++..-..+.+|..-|.-|+.+-+-|.+...+-+.-
T Consensus 46 id~imer~~~ieNdlg~--------~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~-- 115 (157)
T COG3352 46 IDAIMERMTDIENDLGK--------VKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG-- 115 (157)
T ss_pred HHHHHHHHHHHHhhccc--------ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH--
Confidence 46666777788877653 22344555566777777777777777888888888888888888776665543
Q ss_pred HHHHHHHHHHhcccc
Q 004305 171 RLIEFAEAVQSKLKY 185 (762)
Q Consensus 171 ~L~~~ae~I~~~L~y 185 (762)
.++++.++|.+-+.-
T Consensus 116 ~veel~eqV~el~~i 130 (157)
T COG3352 116 IVEELEEQVNELKMI 130 (157)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666554443
No 75
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=20.01 E-value=1e+03 Score=28.94 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=51.0
Q ss_pred hhhhhcChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004305 84 IEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (762)
Q Consensus 84 ~~~~i~~~~~F~~W~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (762)
+...+....+|.+=|..+-+.+.. -.+.+..-...|+.+.++++ .-..+...+.++++.|+.+-+
T Consensus 26 E~~~l~~~~~~L~~f~~v~~~l~~--------~~~~v~~l~~~~~~~~~~l~-------~~~~~t~~ll~~~~~L~~~~~ 90 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSPVNRQLKR--------LQSDVDKLNSSCDQMQDRLS-------AAKSETSDLLEEASELREQKE 90 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666554322 22222222333444443333 334556666667777777666
Q ss_pred HHHHHHHHHHHHHH----------HHHh-----cccchhhHHHHHH
Q 004305 164 RLVIEKQRLIEFAE----------AVQS-----KLKYFDELENIAA 194 (762)
Q Consensus 164 ~Ll~eq~~L~~~ae----------~I~~-----~L~yF~~Le~i~r 194 (762)
.+-..++-|..+-+ .+.+ .=.||..|+++.+
T Consensus 91 ~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~ 136 (618)
T PF06419_consen 91 ELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQK 136 (618)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 66555555544432 2222 2468888887764
Done!