Query 004305
Match_columns 762
No_of_seqs 163 out of 216
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 20:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 97.4 0.34 1.1E-05 55.9 38.1 80 677-761 485-566 (571)
2 2b1e_A Exocyst complex compone 97.0 0.83 2.8E-05 52.6 37.6 169 172-358 5-205 (564)
3 3vmx_A Voltage-gated hydrogen 55.9 42 0.0014 25.6 6.8 40 138-177 3-42 (48)
4 4hpq_C ATG17, KLTH0D15642P; au 46.7 3.2E+02 0.011 29.9 18.5 36 263-301 327-363 (413)
5 1u4q_A Spectrin alpha chain, b 46.1 2E+02 0.007 29.1 13.1 16 91-106 118-133 (322)
6 3uul_A Utrophin; spectrin repe 44.9 1.5E+02 0.005 25.4 11.8 17 91-107 11-27 (118)
7 2jqq_A Conserved oligomeric go 36.5 3.2E+02 0.011 26.8 11.3 171 101-296 16-193 (204)
8 1deq_A Fibrinogen (alpha chain 30.6 5.4E+02 0.019 27.7 13.4 90 141-242 90-189 (390)
9 3uun_A Dystrophin; triple heli 28.8 2.6E+02 0.0091 23.6 9.9 17 91-107 11-27 (119)
10 1ez3_A Syntaxin-1A; three heli 26.8 2E+02 0.0067 25.4 7.9 62 123-184 10-71 (127)
11 2xs1_A Programmed cell death 6 24.8 2.5E+02 0.0087 32.7 10.4 82 112-197 613-694 (704)
12 1xl3_C Protein type A, secreti 23.6 1.2E+02 0.004 26.4 5.2 67 669-735 15-89 (92)
13 2cly_A ATP synthase B chain, m 22.8 5.1E+02 0.017 25.7 10.6 31 167-197 139-169 (214)
14 2qk1_A Protein STU2; STU2P, XM 21.3 98 0.0034 31.0 5.2 119 595-735 100-223 (249)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=97.40 E-value=0.34 Score=55.90 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHhhc-CChhHHHHhHHHHHHHHHHHHHHHHHHHHh-cCChhhhhccCCCCHHHH
Q 004305 677 PDKVAELVHKVNAAIQQELPPVMAKMKLYL-QNPSTRTILFKPVKTNIVEAHIQVQSLLKA-EYMPEEQSIINMVSMPDL 754 (762)
Q Consensus 677 p~~i~~~~~~~~~~i~~~lp~~~~~m~lYL-~d~~t~~iL~~pI~~~i~~~~~q~~~~~~~-~Y~~e~~~~i~~~~~~~l 754 (762)
++.|++....|....++ +++.-+.|. .|++.+.-|-..|.+.|+.+|..|++-... +++..--.-| =-||++|
T Consensus 485 r~~iKe~fk~Fn~~Fee----~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~Kyi-Kytpe~l 559 (571)
T 2pft_A 485 RQMIKERFKGFNDGLEE----LCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYI-KYRVEQV 559 (571)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCcc-ccCHHHH
Confidence 45677777788776666 666556665 799999999999999999999998887654 2111000111 2367788
Q ss_pred HHHhhhc
Q 004305 755 QAQLDSL 761 (762)
Q Consensus 755 ~~~l~~~ 761 (762)
..+|+.|
T Consensus 560 e~~L~~L 566 (571)
T 2pft_A 560 GDMIDRL 566 (571)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 8877665
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=96.99 E-value=0.83 Score=52.59 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhC----CCCcchHHHHHHHHHHHHHH--
Q 004305 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQVQA-- 245 (762)
Q Consensus 172 L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~h----p~fkda~~Y~~rfkq~l~~a-- 245 (762)
++..-+.|.+-+.||+.....-..++.+-..++-+.|...|.+|+++++||+.| +++|+.+-=+.+++.++.++
T Consensus 5 Id~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~~ 84 (564)
T 2b1e_A 5 IESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEA 84 (564)
T ss_dssp ---CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHH
Confidence 334445566666677665555555544322367789999999999999999874 47777777788888888443
Q ss_pred --------HHHhccCCCCCCCchhhhhHHHHH--H----HHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhh
Q 004305 246 --------AIRSSGGSKTSVSEGVEASLIYVR--F----KAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSL 311 (762)
Q Consensus 246 --------~ir~~~~~~~~~s~~~~~aLlY~k--F----~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~L 311 (762)
+++.+ ..+.+. ..+..+ | .+....++.+...+.... .-.+|.+.|.+.|...
T Consensus 85 ~L~~~F~~lL~~s----~p~~p~---~~i~k~~p~p~l~~~~l~~L~~Ia~~m~~~g-------~~~~~~~iY~~~R~~~ 150 (564)
T 2b1e_A 85 QLRVYFISILNSI----KPFDPQ---INITKKMPFPYYEDQQLGALSWILDYFHGNS-------EGSIIQDILVGERSKL 150 (564)
T ss_dssp HHHHHHHHHHTTS----CCCCHH---HHHHHTCCCCCCCHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCCCHH---HhhccCCCCCCCCHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHH
Confidence 22211 111111 111111 1 122234555555444331 1357999999999776
Q ss_pred hhHHHHHHHHhHhc------c-C-----CchhhHHhHHHHHHHHHHHHHHhhcccCCCC
Q 004305 312 VKGIVQQRISEFSK------K-E-----TLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 358 (762)
Q Consensus 312 L~p~i~~~l~~~~~------~-~-----~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~ 358 (762)
|...+ ..+.. + . ....-+..-..-+..+.+.|+.|..+.|+..
T Consensus 151 l~~sL----~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~~vf~~~ 205 (564)
T 2b1e_A 151 ILKCM----AFLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY 205 (564)
T ss_dssp HHHHH----TTTSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHH----HHhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55543 22210 0 0 0011122223344667889999999999874
No 3
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=55.89 E-value=42 Score=25.60 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004305 138 LDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (762)
Q Consensus 138 l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae 177 (762)
...+..|...+..+..+...|...|..+-.|-.||..+-.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999988888887643
No 4
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=46.66 E-value=3.2e+02 Score=29.85 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhhh-ChhHHhHHHHHHH
Q 004305 263 ASLIYVRFKAAASELKPVLEEIESRS-SKKEYVQILEECH 301 (762)
Q Consensus 263 ~aLlY~kF~~~a~~lk~Li~eie~R~-~~~Ey~slL~dc~ 301 (762)
.-.+|.+|..+ ++.|+.|++.|- ...-+.+++.+|.
T Consensus 327 L~~~Y~~f~~a---Y~~lL~Ev~RRr~~~~~~~~i~~~~~ 363 (413)
T 4hpq_C 327 LLDFYANFERS---YHNLLKEVKRRKETAAKLSQILKSCE 363 (413)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578777765 778999999885 3344555554443
No 5
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=46.14 E-value=2e+02 Score=29.13 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=9.9
Q ss_pred hHHHHhhHHHHHHHHh
Q 004305 91 TNQFYNWFTDLELAMK 106 (762)
Q Consensus 91 ~~~F~~W~~~le~~~~ 106 (762)
..+|..|....+..+.
T Consensus 118 ~~~~~~Wl~e~e~~~~ 133 (322)
T 1u4q_A 118 MDDEESWIKEKKLLVS 133 (322)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455668877765554
No 6
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=44.87 E-value=1.5e+02 Score=25.36 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=13.6
Q ss_pred hHHHHhhHHHHHHHHhh
Q 004305 91 TNQFYNWFTDLELAMKS 107 (762)
Q Consensus 91 ~~~F~~W~~~le~~~~~ 107 (762)
..++..|..+.|..+.+
T Consensus 11 l~el~~WL~e~e~~l~~ 27 (118)
T 3uul_A 11 LEEVLTWLLSAEDTFQE 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 47788999999888754
No 7
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=36.48 E-value=3.2e+02 Score=26.81 Aligned_cols=171 Identities=15% Similarity=0.175 Sum_probs=88.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004305 101 LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180 (762)
Q Consensus 101 le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~ 180 (762)
++..+.++....|-.| .+-|+..-++-++++..+.....+-.+|.++-+.|- + ..+....|.|.
T Consensus 16 m~~~LLe~i~~~YddY-------~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~---~------~~i~~Tre~v~ 79 (204)
T 2jqq_A 16 MVQTLLEQIRSNYDDY-------LTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLI---K------DDISNTQEIIK 79 (204)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHH---H------HSCSTTHHHHH
T ss_pred HHHHHHHHHHhhhHHH-------HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---h------hhhhhHHHHHH
Confidence 3444455555555544 345666666556666666666555555544433332 2 23446778899
Q ss_pred hcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHH---HH--HHHHhccCCCC
Q 004305 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQ---VQ--AAIRSSGGSKT 255 (762)
Q Consensus 181 ~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~l---~~--a~ir~~~~~~~ 255 (762)
..+.|-..||.|...|+.- +.=.+-..+..+|=.|+.=|...-. -|-+..-.=-+|+- .+ ..+....
T Consensus 80 d~l~YLkkLD~l~~~Lq~h---~~Lse~l~l~kqLs~sLh~mC~~~p-ld~eLc~~l~~qL~~L~~~~~~ll~~l~---- 151 (204)
T 2jqq_A 80 DVLEYLKKLDEIYGSLRNH---SQLTEALSLGKRLSKSLHEMCGIEP-LEEEICSGLIEQLYKLITASRRILESCA---- 151 (204)
T ss_dssp HHHHHHHHHHHHHHTCSSS---SHHHHHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999999652 2334556788899999999988844 67666655545544 11 2222221
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHHHHHHHHhhh--ChhHHhHH
Q 004305 256 SVSEGVEASLIYVRFKAAASELKPVLEEIESRS--SKKEYVQI 296 (762)
Q Consensus 256 ~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~--~~~Ey~sl 296 (762)
-.++....-+-+.|.+++..|+.-+.-+-.|| .+.+|..+
T Consensus 152 -dl~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE~p~~~~~l 193 (204)
T 2jqq_A 152 -DSNSPYIHHLRNDYQDLLQEFQISLKILTEKCLENPSSLQNL 193 (204)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred -hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhH
Confidence 11233456677889999999988888888887 34455543
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.58 E-value=5.4e+02 Score=27.75 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHH
Q 004305 141 FNELQLQHHAVATKTKTLHDACDRLVIE-KQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECI 219 (762)
Q Consensus 141 l~~L~~~~~~V~~kT~~l~~~ce~Ll~e-q~~L~~~ae~I~~~L~yF~~Le~i~r~L~sp~~~V~~~~F~~~L~~LD~ci 219 (762)
+..|.+-.+...++.+.....+.++..+ ..+...+-+.|.+.+.--..|..+.+.+-+ =+.|||..|
T Consensus 90 ~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~------------kiqRLE~~I 157 (390)
T 1deq_A 90 TKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLV------------DMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 3333333444444444444444444433 245566677777777765666655554422 256666666
Q ss_pred HHhh--------hCCCCc-chHHHHHHHHHHH
Q 004305 220 LYVE--------GNPQYA-ESSVYLLKFRQLQ 242 (762)
Q Consensus 220 ~Fl~--------~hp~fk-da~~Y~~rfkq~l 242 (762)
++-. ..-+|+ |.+.|...=|||.
T Consensus 158 d~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 158 DIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 5543 234788 8888888888865
No 9
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=28.81 E-value=2.6e+02 Score=23.56 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=13.3
Q ss_pred hHHHHhhHHHHHHHHhh
Q 004305 91 TNQFYNWFTDLELAMKS 107 (762)
Q Consensus 91 ~~~F~~W~~~le~~~~~ 107 (762)
..++..|..+.|..+..
T Consensus 11 l~el~~WL~~~e~~l~~ 27 (119)
T 3uun_A 11 LEEVLSWLLSAEDTLQA 27 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 56778899999887754
No 10
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.77 E-value=2e+02 Score=25.42 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004305 123 RIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (762)
Q Consensus 123 ~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (762)
....++.|-..++.+-..+++|...+..+-..++......++|=.--......+..|..+|+
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk 71 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLK 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555444433222222332222333455555555554
No 11
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=24.78 E-value=2.5e+02 Score=32.71 Aligned_cols=82 Identities=12% Similarity=0.316 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004305 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (762)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Le~ 191 (762)
+|..+.+.+......=+.|+.++...-+.|..+... ...+..=...+.+|-.--....++...+.+-++||+.|..
T Consensus 613 ~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~ 688 (704)
T 2xs1_A 613 VYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQS----NNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTE 688 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 477788888888877778888877777666554321 1112222344444444455666888999999999999998
Q ss_pred HHHhhC
Q 004305 192 IAASFY 197 (762)
Q Consensus 192 i~r~L~ 197 (762)
+..+|.
T Consensus 689 ~~~~~~ 694 (704)
T 2xs1_A 689 ILVRFQ 694 (704)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877763
No 12
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=23.60 E-value=1.2e+02 Score=26.38 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=43.3
Q ss_pred cccccccChhHHHHHHHHHHHH-HHhhcHH---HHHHHHh----hcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004305 669 LKDQAFATPDKVAELVHKVNAA-IQQELPP---VMAKMKL----YLQNPSTRTILFKPVKTNIVEAHIQVQSLLK 735 (762)
Q Consensus 669 l~~q~fa~p~~i~~~~~~~~~~-i~~~lp~---~~~~m~l----YL~d~~t~~iL~~pI~~~i~~~~~q~~~~~~ 735 (762)
|+++-|++|..|..+..++.-. ++.++-- +.+.++. -.+|++.+..|+.++|+.+-.+.++=...++
T Consensus 15 L~e~rwi~~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d~e~R~~lL~a~Q~AlD~aI~~Ede~l~ 89 (92)
T 1xl3_C 15 LVDXRWAGIHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELS 89 (92)
T ss_dssp HHHSTTCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567788888887776654322 3332222 2222222 1578999999999999999999887555544
No 13
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=22.82 E-value=5.1e+02 Score=25.71 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhC
Q 004305 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFY 197 (762)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Le~i~r~L~ 197 (762)
...+++..++.++..+|.|--+++...|++.
T Consensus 139 ~yre~~~~v~~EvK~rLDy~v~~e~~~r~~e 169 (214)
T 2cly_A 139 TYRERLHRVYREVKNRLDYHISVQNMMRQKE 169 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999873
No 14
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=21.29 E-value=98 Score=30.97 Aligned_cols=119 Identities=7% Similarity=0.082 Sum_probs=70.0
Q ss_pred hhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhcCCCCcccchhccccccccc
Q 004305 595 SLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDP-MLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQA 673 (762)
Q Consensus 595 ~l~~~l~P~v~e~~~Dsk~eld~~Lk~~ce~fI~~~t~~i~~p-l~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~ 673 (762)
..+..++|.+.+..-|.|..+-.....++..|...+....+.| +...++.+-... ..++ ..++.++
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-----~~k~--------~~vk~~a 166 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-----KHKT--------PQIRMEC 166 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-----TCSS--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-----cCCC--------hHHHHHH
Confidence 3556678999999999999999999999999999763322222 333333322110 0010 0111111
Q ss_pred ccChhHHHHHHHHHH---HHHHhhc-HHHHHHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004305 674 FATPDKVAELVHKVN---AAIQQEL-PPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLK 735 (762)
Q Consensus 674 fa~p~~i~~~~~~~~---~~i~~~l-p~~~~~m~lYL~d~~t~~iL~~pI~~~i~~~~~q~~~~~~ 735 (762)
. .-+..++.... ..+...+ |.+...+..+++|.+ ..||+.-.+....+...+.
T Consensus 167 l---~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~------~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 167 T---QLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ------PAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp H---HHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHHC
T ss_pred H---HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHhC
Confidence 1 11222332222 2233456 777777778888763 5688888888888777764
Done!