Query 004307
Match_columns 762
No_of_seqs 224 out of 670
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 7E-244 2E-248 2074.9 67.1 758 2-762 155-918 (918)
2 PLN02264 lipoxygenase 100.0 1E-241 2E-246 2057.1 64.2 757 1-762 158-919 (919)
3 PLN02337 lipoxygenase 100.0 3E-238 6E-243 2036.9 66.4 756 2-762 96-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 8E-198 2E-202 1701.4 32.6 663 76-746 1-667 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 99.9 1.3E-22 2.9E-27 193.8 8.2 66 2-67 71-137 (137)
6 smart00308 LH2 Lipoxygenase ho 98.9 3.6E-09 7.8E-14 96.7 7.6 54 2-55 50-105 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.7 2.8E-08 6.1E-13 91.3 7.7 64 2-65 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.5 5.7E-07 1.2E-11 83.6 8.6 63 2-64 49-115 (116)
9 cd02899 PLAT_SR Scavenger rece 98.0 9.7E-06 2.1E-10 75.4 5.9 49 4-54 48-98 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.7 9.2E-05 2E-09 69.3 7.1 54 3-57 50-107 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.5 0.00055 1.2E-08 64.5 9.1 61 4-65 53-118 (120)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.5 0.00034 7.3E-09 65.7 7.3 54 3-57 43-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.2 0.0011 2.5E-08 62.5 8.0 55 3-57 51-109 (120)
14 cd01754 PLAT_plant_stress PLAT 97.0 0.0018 3.9E-08 62.1 6.8 53 5-57 60-119 (129)
15 KOG2080 Uncharacterized conser 40.7 13 0.00027 45.6 1.1 53 4-57 1014-1070(1295)
16 cd01755 PLAT_lipase PLAT/ LH2 34.5 1.7E+02 0.0038 27.6 7.6 49 2-50 47-105 (120)
17 PF10474 DUF2451: Protein of u 26.0 41 0.00089 35.6 2.0 24 544-573 178-201 (234)
18 PF12588 PSDC: Phophatidylseri 23.6 1.1E+02 0.0024 30.1 4.3 126 560-706 11-139 (141)
19 PF11248 DUF3046: Protein of u 22.1 44 0.00095 28.5 1.0 24 301-325 20-43 (63)
20 KOG2675 Adenylate cyclase-asso 20.2 2.5E+02 0.0054 32.6 6.6 110 429-585 91-217 (480)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=7.1e-244 Score=2074.87 Aligned_cols=758 Identities=55% Similarity=1.007 Sum_probs=728.9
Q ss_pred cEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeccccccCCCCCcceEEeecccccCCCCChhhHH
Q 004307 2 QYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKR 81 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~~~~e~fl~~i~v~~~p~~~~~F~c~sWv~~~~~~~~~riff~n~~~lp~~tp~~l~~ 81 (762)
+|+++|+||++||+||||+|+|+|++||||++|+|+++|+|.|||+||||||+.++++.+||||+||+|||++||++|++
T Consensus 155 ~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~ 234 (918)
T PLN02305 155 EYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKD 234 (918)
T ss_pred EEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccccccCeeeeccccCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCCCCCCCccCccC---CC
Q 004307 82 YRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NF 158 (762)
Q Consensus 82 ~R~~EL~~~rg~g~g~r~~~driY~y~~yndlG~p~~~~~~~rpvlgg~~~pyprr~rtgr~~~~~~~~~~~~~~---~~ 158 (762)
+||+||++|||||+||||+||||||||||||||+||++++++||||||.+|||||||||||+|+++||.+|+|.. .+
T Consensus 235 ~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~ 314 (918)
T PLN02305 235 LRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPV 314 (918)
T ss_pred HHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999669999999999999999999999953 47
Q ss_pred ccCCCCccChhhhcchhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCccccchhhchhH-HHHHHh
Q 004307 159 YVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAI 237 (762)
Q Consensus 159 ylP~De~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~di~~ly~~~~~~~~~~~~~~~~~~~~-~~~~~~ 237 (762)
||||||+|++.|.++|.+.++|+++|.++|.|+++++.+..+|+||+||++||++|++||......+.+..+| .+.+.+
T Consensus 315 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i 394 (918)
T PLN02305 315 YVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQV 394 (918)
T ss_pred CCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHh
Confidence 9999999999999999999999999999999999988778999999999999999999987421122232232 455556
Q ss_pred hccCCccccccCccccccccccccccHHHHHHHhhCCCccchhcccCCCCCCCCCCCcCCCCCCcccHHHHHHhhCCccc
Q 004307 238 EDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMIS 317 (762)
Q Consensus 238 ~~~~~~~~~~p~P~~~~~~~~~W~~D~~FgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~~g~~~~~vt~~~i~~~l~g~~t 317 (762)
.+++|.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++++|||++||+++|+||++||+..|+| +|
T Consensus 395 ~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~T 473 (918)
T PLN02305 395 LSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MT 473 (918)
T ss_pred hhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-Cc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHHhcCcEEEeccccccCchhhhcccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCCc
Q 004307 318 VEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTEC 397 (762)
Q Consensus 318 l~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~d~~~~~ 397 (762)
|++||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++..++||||.++++++
T Consensus 474 leeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~ 553 (918)
T PLN02305 474 VEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTH 553 (918)
T ss_pred HHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999877666678899997766788
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhcccchHHHHhcccCCCcccccc
Q 004307 398 WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESS 477 (762)
Q Consensus 398 ~~W~LAK~~v~~aD~~~Hqli~Hll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI~~gG~id~~ 477 (762)
|.|+||||||++||+++||+|+||++||+|||||||||+||||.+|||||||.||||+||+||++||++||++||++|++
T Consensus 554 w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~ 633 (918)
T PLN02305 554 WIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEAC 633 (918)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHhhccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHHHhccccccc
Q 004307 478 FSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPD 557 (762)
Q Consensus 478 ~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~fV~~yv~~yY~~ 557 (762)
|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+||+||++||++||++||++
T Consensus 634 fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~ 713 (918)
T PLN02305 634 FSPGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSE 713 (918)
T ss_pred eccchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHHHHHHHHHhhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCCccccCCCC
Q 004307 558 KSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNI 637 (762)
Q Consensus 558 D~~V~~D~ELQaW~~Ei~~~G~~d~~~~p~~p~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~PN~P~~lr~p~ 637 (762)
|++|++|.|||+||+||+++||+++++.+|||+|+|+++||++||+|||+||+||||||||||+|+||+||+|++||+||
T Consensus 714 D~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp~ 793 (918)
T PLN02305 714 PNSITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKLI 793 (918)
T ss_pred hhhhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHhhcccHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCcCCC--CCCCcHHHHHHHHHHHHHHHH
Q 004307 638 ATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEP--AWREDPVINAAFEKFRGKLME 715 (762)
Q Consensus 638 P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~--~~~~d~~~~~a~~~F~~~L~~ 715 (762)
|++ ++.++++|+.+||+++|++||++.||+.+|+++++||+|++||+|||++.+. .|+.|+++++|+++|+++|++
T Consensus 794 P~~--~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~~D~~~~~A~~rF~~~L~e 871 (918)
T PLN02305 794 PQE--NDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWINDHEVVKLFNKFSARLEE 871 (918)
T ss_pred CCC--CCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccccCHHHHHHHHHHHHHHHH
Confidence 987 6678999999999999999999999999999999999999999999999875 699999999999999999999
Q ss_pred HHHHHhhhcCCccccccCCCccCCceeecCCCCCCCCcCCCCccccC
Q 004307 716 LEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI 762 (762)
Q Consensus 716 ie~~I~~RN~~~~~knr~~~~~~PY~yL~Ps~~~g~t~~~IpnSIsI 762 (762)
||++|++||++++||||+||+.+||+||+|+++||||||||||||||
T Consensus 872 IE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI 918 (918)
T PLN02305 872 IEKTINERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI 918 (918)
T ss_pred HHHHHHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1e-241 Score=2057.14 Aligned_cols=757 Identities=53% Similarity=0.988 Sum_probs=726.3
Q ss_pred CcEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeccccccCCCCCcceEEeecccccCCCCChhhH
Q 004307 1 MQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLK 80 (762)
Q Consensus 1 ~~~~~~f~~~~~fG~pgav~v~n~~~~e~fl~~i~v~~~p~~~~~F~c~sWv~~~~~~~~~riff~n~~~lp~~tp~~l~ 80 (762)
++|+++|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+||||||+.++++.+||||+||+|||++||++|+
T Consensus 158 ~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~ 237 (919)
T PLN02264 158 VHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLR 237 (919)
T ss_pred eEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccCeeeeccccCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCCCCCCCccCccC---C
Q 004307 81 RYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---N 157 (762)
Q Consensus 81 ~~R~~EL~~~rg~g~g~r~~~driY~y~~yndlG~p~~~~~~~rpvlgg~~~pyprr~rtgr~~~~~~~~~~~~~~---~ 157 (762)
++|++||++|||||+||||+||||||||||||||+||++++++||||||.+|||||||||||+|+++||.+|||.. .
T Consensus 238 ~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~ 317 (919)
T PLN02264 238 ALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLP 317 (919)
T ss_pred HHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCc
Confidence 9999999999999999999999999999999999999999999999999669999999999999999999999954 4
Q ss_pred CccCCCCccChhhhcchhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCccccchhhch-hHHHHHH
Q 004307 158 FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKA 236 (762)
Q Consensus 158 ~ylP~De~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~di~~ly~~~~~~~~~~~~~~~~~~-~~~~~~~ 236 (762)
+||||||+|++.|.++|.+.++|+++|.++|.|+.+++.+ +|+||+||.+||.+|++||.....+..+.. +|.+.+.
T Consensus 318 iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~~p~~~~~~~ 395 (919)
T PLN02264 318 MYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDDIFKKFPLPKVVTT 395 (919)
T ss_pred eeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhhHhhcCChHHHHHH
Confidence 7999999999999999999999999999999999988743 999999999999999999874222222223 4455666
Q ss_pred hhccCCccccccCccccccccccccccHHHHHHHhhCCCccchhcccCCCCCCCCCCCcCCCCCCcccHHHHHHhhCCcc
Q 004307 237 IEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMI 316 (762)
Q Consensus 237 ~~~~~~~~~~~p~P~~~~~~~~~W~~D~~FgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~~g~~~~~vt~~~i~~~l~g~~ 316 (762)
+.++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+||++.||+++|+||++||+..|+| +
T Consensus 396 ~~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~ 474 (919)
T PLN02264 396 LQESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-L 474 (919)
T ss_pred hhhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-C
Confidence 678889999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cHHHHHhcCcEEEeccccccCchhhhcccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCC
Q 004307 317 SVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTE 396 (762)
Q Consensus 317 tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~d~~~~ 396 (762)
||++||++|||||+||||++||+++++|.++++++|||+||||++++|+|+||||||+|+++++++..++||||++++++
T Consensus 475 Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~ 554 (919)
T PLN02264 475 SVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATS 554 (919)
T ss_pred cHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987655567899999766678
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhcccchHHHHhcccCCCccccc
Q 004307 397 CWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIES 476 (762)
Q Consensus 397 ~~~W~LAK~~v~~aD~~~Hqli~Hll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI~~gG~id~ 476 (762)
+|.|+||||||++||+++||+|+||++||++||||+|||+||||.+|||||||.||||+||+||++||++||++||++|+
T Consensus 555 ~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~ 634 (919)
T PLN02264 555 NWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIES 634 (919)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHhhccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHHHhcccccc
Q 004307 477 SFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYP 556 (762)
Q Consensus 477 ~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~fV~~yv~~yY~ 556 (762)
+|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+||+||++||++||++||+
T Consensus 635 ~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~~V~~yv~~YY~ 714 (919)
T PLN02264 635 CFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYP 714 (919)
T ss_pred eeccchhHHHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999669999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCCccccCCC
Q 004307 557 DKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCN 636 (762)
Q Consensus 557 ~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~p~~p~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~PN~P~~lr~p 636 (762)
+|++|++|.|||+||+||++.||+++++.+|||+|+|+++||++||+|||+||+||||||||||+|+||+||+|++||+|
T Consensus 715 ~D~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~rrp 794 (919)
T PLN02264 715 DPSLICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRL 794 (919)
T ss_pred ChhhhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCcccccccCCCCChHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHhhcccHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCcCCC-CCCCcHHHHHHHHHHHHHHHH
Q 004307 637 IATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEP-AWREDPVINAAFEKFRGKLME 715 (762)
Q Consensus 637 ~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~-~~~~d~~~~~a~~~F~~~L~~ 715 (762)
||++ |+.+|++|+.+|+++||++||++.||+.+|+++++||+|++||+|||++..+ .|+.|+++++|+++|+++|++
T Consensus 795 ~P~~--~~~e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~~D~~~~~af~rF~~~L~e 872 (919)
T PLN02264 795 IPDE--SDPEYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFSAEIGR 872 (919)
T ss_pred CCCC--CChhhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCccccccCHHHHHHHHHHHHHHHH
Confidence 9987 5688999999999999999999999999999999999999999999998765 799999999999999999999
Q ss_pred HHHHHhhhcCCccccccCCCccCCceeecCCCCCCCCcCCCCccccC
Q 004307 716 LEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI 762 (762)
Q Consensus 716 ie~~I~~RN~~~~~knr~~~~~~PY~yL~Ps~~~g~t~~~IpnSIsI 762 (762)
||++|++||++++||||+||+.+||+||+|+++||||||||||||||
T Consensus 873 Ie~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~G~T~~gIPNSISI 919 (919)
T PLN02264 873 IEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 919 (919)
T ss_pred HHHHHHHHcCCccccccCCCCCCCceeeCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=2.9e-238 Score=2036.89 Aligned_cols=756 Identities=48% Similarity=0.875 Sum_probs=723.9
Q ss_pred cEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeccccccCCCCCcceEEeecccccCCCCChhhH
Q 004307 2 QYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLK 80 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~~~~e~fl~~i~v~~~p~-~~~~F~c~sWv~~~~~~~~~riff~n~~~lp~~tp~~l~ 80 (762)
+|+++|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+||||||+.++++.+||||+||+|||++||++|+
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~tP~~l~ 175 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQTPAPLR 175 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccccHHHH
Confidence 6999999999999999999999999999999999999995 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccCeeeeccccCCCCCCCCCCccccccCCC-CCCCCCcccCCCCCCCCCCCCccCccC---
Q 004307 81 RYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREG--- 156 (762)
Q Consensus 81 ~~R~~EL~~~rg~g~g~r~~~driY~y~~yndlG~p~~~~~~~rpvlgg-~~~pyprr~rtgr~~~~~~~~~~~~~~--- 156 (762)
++||+||++|||||+||||+||||||||||||||+||++++++|||||| .+|||||||||||+|+++||.+|+|..
T Consensus 176 ~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~esr~~~~~ 255 (866)
T PLN02337 176 PYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSESRLPLLS 255 (866)
T ss_pred HHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccccccccCC
Confidence 9999999999999999999999999999999999999999999999999 789999999999999999999999943
Q ss_pred -CCccCCCCccChhhhcchhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCccccchhhch--hHHH
Q 004307 157 -NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL--LPRL 233 (762)
Q Consensus 157 -~~ylP~De~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~di~~ly~~~~~~~~~~~~~~~~~~--~~~~ 233 (762)
.+||||||+|++.|.++|.+.++|+++|.++|.|+.+++.+..+|+||+||.+||.+|+++|.....+..+.. ++.+
T Consensus 256 ~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~~~~~~~~~p~~~~ 335 (866)
T PLN02337 256 LNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPLLEELRKNIPLEML 335 (866)
T ss_pred CCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchHHHHhhhcChHHHH
Confidence 4799999999999999999999999999999999999887789999999999999999999875332222332 3346
Q ss_pred HHHhhccCCccccccCccccccccccccccHHHHHHHhhCCCccchhcccCCCCCCCCCCCcCCCCCCcccHHHHHHhhC
Q 004307 234 VKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIG 313 (762)
Q Consensus 234 ~~~~~~~~~~~~~~p~P~~~~~~~~~W~~D~~FgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~~g~~~~~vt~~~i~~~l~ 313 (762)
.+.+.++++.++|||+|+||++|+.+|++|++||||+|||+||++|+||++||++|+|||++||+++|+||++||++.|+
T Consensus 336 ~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~e~v~~~L~ 415 (866)
T PLN02337 336 KELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITEEHIEKNLE 415 (866)
T ss_pred HHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCHHHHHhccC
Confidence 66667888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccHHHHHhcCcEEEeccccccCchhhhcccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCC--CCCceeeeCC
Q 004307 314 GMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK--PQWKQVFLPS 391 (762)
Q Consensus 314 g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~~~~--~~~~~VftP~ 391 (762)
| +||++||++|||||+||||.+|||+.++|...++ .|||+||||++++|+|+||||||++|+..++ ++.++||||+
T Consensus 416 g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~~~~VfTP~ 493 (866)
T PLN02337 416 G-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGAVSKVYTPA 493 (866)
T ss_pred C-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCcccCCCCCCeECCC
Confidence 8 9999999999999999999899999889986555 9999999999999999999999998764322 3469999999
Q ss_pred CCCCCchHHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhcccchHHHHhcccCCC
Q 004307 392 WHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNAD 471 (762)
Q Consensus 392 d~~~~~~~W~LAK~~v~~aD~~~Hqli~Hll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI~~g 471 (762)
|+++++|.|+|||+||++||+++||+|+||++||+++|||+|||+||||.+|||||||.||||+||+||++||++||++|
T Consensus 494 ~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~g 573 (866)
T PLN02337 494 EDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALARQILINAG 573 (866)
T ss_pred CCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHheeCCC
Confidence 87667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhHHHHHHHHhhccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHHHhc
Q 004307 472 GIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYV 551 (762)
Q Consensus 472 G~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~fV~~yv 551 (762)
|++|+++++|+++++|++++|++ |+|++++||+||++|||+++|+++|||+++.||+||||||||+||+||++||++||
T Consensus 574 Giid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~RGv~~~D~~~p~g~~l~i~dYPYrdDGL~iW~AI~~~V~~yv 652 (866)
T PLN02337 574 GILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKRGVAVEDPSSPHGVRLLIEDYPYAVDGLEIWSAIETWVKEYC 652 (866)
T ss_pred CeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHcCCCccccccccccccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCHHHHHHHHHHhhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCCcc
Q 004307 552 NHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPT 631 (762)
Q Consensus 552 ~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~p~~p~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~PN~P~ 631 (762)
++||++|++|++|.|||+||+||+++||+++++.+|||+|+|+++||++||+|||+||+||||||||||+|+||+||+|+
T Consensus 653 ~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gfvPN~P~ 732 (866)
T PLN02337 653 AFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAVNFGQYPYAGYLPNRPT 732 (866)
T ss_pred HhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCchHHHHhhcccHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCcCCCCCCCcHHHHHHHHHHHH
Q 004307 632 TARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRG 711 (762)
Q Consensus 632 ~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~~~F~~ 711 (762)
+||+|||++ |+.++.+|..+|++++|++||++.||+.+|+++++||+|++||+|||+|++..|+.|+++++|+++|++
T Consensus 733 ~~r~~~P~~--~~~e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~de~yLG~~~~~~w~~d~~~~~a~~~F~~ 810 (866)
T PLN02337 733 VSRRFMPEP--GTPEYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTPEWTSDAEPLEAFKRFGE 810 (866)
T ss_pred hhcCCCCCC--CchhhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCCceeccCcCCcccccCHHHHHHHHHHHH
Confidence 999999975 788899999999999999999999999999999999999999999999997799999999999999999
Q ss_pred HHHHHHHHHhhhcCCccccccCCCccCCceeecCCC-----CCCCCcCCCCccccC
Q 004307 712 KLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFS-----EPGVTGKGVPYSISI 762 (762)
Q Consensus 712 ~L~~ie~~I~~RN~~~~~knr~~~~~~PY~yL~Ps~-----~~g~t~~~IpnSIsI 762 (762)
+|++||++|++||+++.+|||+||+++||+||+|++ +||||||||||||||
T Consensus 811 ~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 811 RLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred HHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCcccC
Confidence 999999999999999999999999999999999999 899999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=7.5e-198 Score=1701.39 Aligned_cols=663 Identities=58% Similarity=0.999 Sum_probs=572.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCccccccCeeeeccccCCCCCCCCCCccccccCCC-CCCCCCcccCCCCCCCCCCCCccCc
Q 004307 76 PDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKR 154 (762)
Q Consensus 76 p~~l~~~R~~EL~~~rg~g~g~r~~~driY~y~~yndlG~p~~~~~~~rpvlgg-~~~pyprr~rtgr~~~~~~~~~~~~ 154 (762)
|.+|+++|++||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cCCCccCCCCccChhhhcchhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCccccchhhch-hHHH
Q 004307 155 EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRL 233 (762)
Q Consensus 155 ~~~~ylP~De~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~di~~ly~~~~~~~~~~~~~~~~~~-~~~~ 233 (762)
...+||||||+|++.|+++|..+++|+++|.++|.|+.++..+..+|+||+||++||++|+++|... ..+.. ++.+
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~~~---~~~~~~~~~~ 157 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPTDL---LKKLIPLELL 157 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--HHH---HCCHTTSTTC
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchhhH---hhhcCcHHHH
Confidence 8899999999999999999999999999999999999987767899999999999999998887321 11111 2335
Q ss_pred HHHhhccCCccccccCccccccccccccccHHHHHHHhhCCCccchhcccCCCCCCCCCCCcCCCCCCcccHHHHHHhhC
Q 004307 234 VKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIG 313 (762)
Q Consensus 234 ~~~~~~~~~~~~~~p~P~~~~~~~~~W~~D~~FgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~~g~~~~~vt~~~i~~~l~ 313 (762)
.+.+.++++.++|||+|+|++.++++|++|++||||+|||+||++|+||+++|++++||+++||+++++||++||+..|+
T Consensus 158 ~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~l~ 237 (667)
T PF00305_consen 158 KELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQLE 237 (667)
T ss_dssp CTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHHCH
T ss_pred HHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhccC
Confidence 56666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCcEEEeccccccCchhhhcccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCCCCceeeeCCCC
Q 004307 314 GMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWH 393 (762)
Q Consensus 314 g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~d~ 393 (762)
| +||++||++|||||+||+++.+|+++++|. .+++.|||+||||++++|+|+||||||++++..+.++.++||||+++
T Consensus 238 g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~~d 315 (667)
T PF00305_consen 238 G-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPSDD 315 (667)
T ss_dssp C-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TTSS
T ss_pred C-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecCCC
Confidence 9 999999999999999999998999999988 78999999999999999999999999988754433456899999955
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhcccchHHHHhcccCCCcc
Q 004307 394 STECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGI 473 (762)
Q Consensus 394 ~~~~~~W~LAK~~v~~aD~~~Hqli~Hll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI~~gG~ 473 (762)
++.+|.|+|||+||++||+++||+|+||++||+|||||+|||+||||.+|||||||.||||+||+||++||.+||++||+
T Consensus 316 ~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~gG~ 395 (667)
T PF00305_consen 316 GTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINAGGI 395 (667)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSSTTSH
T ss_pred CccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhccCcc
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHHhhccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHHHhccc
Q 004307 474 IESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNH 553 (762)
Q Consensus 474 id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~fV~~yv~~ 553 (762)
||++|++|+++++|++++|++ |+|++++||+||++|||+++|++++||+++.||+||||+|||+||+||++||++||++
T Consensus 396 id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~~v~~ 474 (667)
T PF00305_consen 396 IDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSDYVNL 474 (667)
T ss_dssp HHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCHHHHHHHHHHhhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCCcccc
Q 004307 554 YYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTA 633 (762)
Q Consensus 554 yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~p~~p~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~PN~P~~l 633 (762)
||++|++|++|.|||+||+||+++||+++++.++|++|+|+++||++||+|||+||+||||||||||+|+||+||+|++|
T Consensus 475 yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~P~~~ 554 (667)
T PF00305_consen 475 YYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNRPTAL 554 (667)
T ss_dssp HSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS-S-B
T ss_pred hcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeeecCCCChhh
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchH--HHHhhcccHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCcCCCCCCCcHHHHHHHHHHHH
Q 004307 634 RCNIATEDPSDEQ--WKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRG 711 (762)
Q Consensus 634 r~p~P~~~kg~~~--~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~~~F~~ 711 (762)
|+++|.+ +..+ +++++++||+++|++||++.||+.+|+++++||+|++||+|||+|++.+|+.|+++++|+++|++
T Consensus 555 r~~~P~~--~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~~~w~~d~~~~~a~~~F~~ 632 (667)
T PF00305_consen 555 RRPMPPP--TTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPEPHWFSDPEAKAAFERFQE 632 (667)
T ss_dssp SSSS--T--SSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SSTTSSSSHHHHHHHHHHHH
T ss_pred cccCCCC--CcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCcccccccHHHHHHHHHHHH
Confidence 9888876 4444 88999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHhhhcCCccccccCCCccCCceeecCC
Q 004307 712 KLMELEGIIDARNADPKLRNRNGAGMVPYELLKPF 746 (762)
Q Consensus 712 ~L~~ie~~I~~RN~~~~~knr~~~~~~PY~yL~Ps 746 (762)
+|++||++|++||+++.+|||+|++++||+||+||
T Consensus 633 ~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 633 ELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 99999999999999999999999999999999997
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.87 E-value=1.3e-22 Score=193.76 Aligned_cols=66 Identities=53% Similarity=1.030 Sum_probs=64.1
Q ss_pred cEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeccccccCCCCCcceEEeec
Q 004307 2 QYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTN 67 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~~~~e~fl~~i~v~~~p~-~~~~F~c~sWv~~~~~~~~~riff~n 67 (762)
+|+++|+||++||+||||+|+|+|++||||++|+|++.|+ |+|||+|||||||.++++.+||||+|
T Consensus 71 ~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 71 AYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 6999999999999999999999999999999999999995 89999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=98.89 E-value=3.6e-09 Score=96.71 Aligned_cols=54 Identities=44% Similarity=0.905 Sum_probs=48.4
Q ss_pred cEEEEEEecCCCCceeEEEEEecC-CCceeeeeEEEeecCCC-cEEEeeccccccC
Q 004307 2 QYESEFEVPSGFGEIGAILVENEH-HKEMYLKDIVLDGLPNG-PVNVTCNSWLHSK 55 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~~-~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~ 55 (762)
.|++.|.++.++|++++|.|.|.+ ..+|||++|+|++.+.| .++|+||+||++.
T Consensus 50 ~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~~~~~F~c~~Wl~~~ 105 (105)
T smart00308 50 TYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTGGKYHFPCNSWVYPD 105 (105)
T ss_pred eEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCCCEEEEEcCceeCCC
Confidence 578899999999999999999999 89999999999875655 8999999999763
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.73 E-value=2.8e-08 Score=91.29 Aligned_cols=64 Identities=31% Similarity=0.581 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCCceeEEEEEec---CCCceeeeeEEEeecCCC-cEEEeeccccccCCCCCcceEEe
Q 004307 2 QYESEFEVPSGFGEIGAILVENE---HHKEMYLKDIVLDGLPNG-PVNVTCNSWLHSKHDNKQKRVFF 65 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~---~~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~~~~~riff 65 (762)
..++.|.++.++|.|.+|.|.+. +...|||++|+|...+.+ .+.|+||+||....+++..||||
T Consensus 46 ~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 35677888889999999999998 789999999999865655 88999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.47 E-value=5.7e-07 Score=83.59 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=54.6
Q ss_pred cEEEEEEecCCCCceeEEEEEecCCC---ceeeeeEEEeecCCC-cEEEeeccccccCCCCCcceEE
Q 004307 2 QYESEFEVPSGFGEIGAILVENEHHK---EMYLKDIVLDGLPNG-PVNVTCNSWLHSKHDNKQKRVF 64 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~~~~---e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~~~~~rif 64 (762)
++++.|.++.++|.+.+|.|.+.+.. +|||++|+|.+...| .++|+|++||.....++..|+|
T Consensus 49 ~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 49 TDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred ceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeec
Confidence 46777888889999999999998865 999999999865555 7899999999999888888876
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.00 E-value=9.7e-06 Score=75.40 Aligned_cols=49 Identities=18% Similarity=0.450 Sum_probs=41.7
Q ss_pred EEEEEecCCCCceeEEEEEecC-CCceeeeeEEEeecCCC-cEEEeecccccc
Q 004307 4 ESEFEVPSGFGEIGAILVENEH-HKEMYLKDIVLDGLPNG-PVNVTCNSWLHS 54 (762)
Q Consensus 4 ~~~f~~~~~fG~pgav~v~n~~-~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~ 54 (762)
++.|. ++++|.+-.|.|.|.. .+.|||++|+|++ |.| .++||||+|+..
T Consensus 48 ~F~v~-~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~~~~Fpc~rWla~ 98 (109)
T cd02899 48 RIRFR-AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGKVFAFNVKRWIGY 98 (109)
T ss_pred EEEEC-ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCCEEEEEcceeeCC
Confidence 45566 7999999999998876 6899999999985 766 788999999954
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.70 E-value=9.2e-05 Score=69.30 Aligned_cols=54 Identities=20% Similarity=0.489 Sum_probs=45.2
Q ss_pred EEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCCC-cEEEeeccccccCCC
Q 004307 3 YESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPNG-PVNVTCNSWLHSKHD 57 (762)
Q Consensus 3 ~~~~f~~~~~fG~pgav~v~n~~---~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~ 57 (762)
.++.+.++.++|.+-.|.|...+ ...|||+.|+|++ +.| ..+||||+|+.+.++
T Consensus 50 d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~-~~~~~~~F~c~rWl~~~~~ 107 (113)
T cd01753 50 DEYKVKVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTG-PGGDEYHFPCYRWIEGYGT 107 (113)
T ss_pred eEEEEecccCCCCcEEEEEEECCCCCCCCeeecEEEEEc-CCCCEEEEEhHHeECCCCE
Confidence 35666777899999999999876 6899999999985 446 788999999988774
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.48 E-value=0.00055 Score=64.54 Aligned_cols=61 Identities=18% Similarity=0.438 Sum_probs=47.1
Q ss_pred EEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCCC-cEEEeeccccccCCCCC-cceEEe
Q 004307 4 ESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPNG-PVNVTCNSWLHSKHDNK-QKRVFF 65 (762)
Q Consensus 4 ~~~f~~~~~fG~pgav~v~n~~---~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~~~-~~riff 65 (762)
++.+.+ .++|.+-.|.|.... ...|||+.|.|.+...| ..+||||+|+...+..- ..|++.
T Consensus 53 ~F~i~~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 53 KFTVEA-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPGTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred EEEEEe-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECCCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 456666 899999999999876 47999999999764445 78899999998876422 355544
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.46 E-value=0.00034 Score=65.69 Aligned_cols=54 Identities=15% Similarity=0.434 Sum_probs=43.5
Q ss_pred EEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCCC-cEEEeeccccccCCC
Q 004307 3 YESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPNG-PVNVTCNSWLHSKHD 57 (762)
Q Consensus 3 ~~~~f~~~~~fG~pgav~v~n~~---~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~ 57 (762)
|.+++.. .++|..-.|.|...+ ...|||+.|.|++.+.| ..+||||+|+.-.+.
T Consensus 43 f~~~v~~-~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 43 LEMTFDC-QNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eEEEEec-CCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 4444433 999999999998866 68999999999876666 789999999977654
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.23 E-value=0.0011 Score=62.45 Aligned_cols=55 Identities=22% Similarity=0.438 Sum_probs=43.7
Q ss_pred EEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCCC-cEEEeeccccccCCC
Q 004307 3 YESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPNG-PVNVTCNSWLHSKHD 57 (762)
Q Consensus 3 ~~~~f~~~~~fG~pgav~v~n~~---~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~ 57 (762)
+++.+.++.++|.+-.|.|.... ...|||++|+|.+...| ...|||++|+...+.
T Consensus 51 ~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 51 DSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQTGKKWFFLCNDWLSVEEG 109 (120)
T ss_pred eEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCCCcEEEEEeCcEECCcCC
Confidence 45566666799999999997655 57999999999853345 788999999987754
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=96.97 E-value=0.0018 Score=62.11 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=42.0
Q ss_pred EEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC---C-cEEEeeccccccCCC
Q 004307 5 SEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN---G-PVNVTCNSWLHSKHD 57 (762)
Q Consensus 5 ~~f~~~~~fG~pgav~v~n~~---~~e~fl~~i~v~~~p~---~-~~~F~c~sWv~~~~~ 57 (762)
+.+..+..+|.+-.|.|.... ...|||.+|+|++... + ..+||||+|+...+.
T Consensus 60 F~v~~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 60 FSGRGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred EEEEeccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 445566889999999998765 6799999999975432 2 689999999977664
No 15
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=40.72 E-value=13 Score=45.57 Aligned_cols=53 Identities=13% Similarity=0.415 Sum_probs=37.4
Q ss_pred EEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCCC-cEEEeeccccccCCC
Q 004307 4 ESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPNG-PVNVTCNSWLHSKHD 57 (762)
Q Consensus 4 ~~~f~~~~~fG~pgav~v~n~~---~~e~fl~~i~v~~~p~~-~~~F~c~sWv~~~~~ 57 (762)
+++|+. +++|..-.+.|--.. ...||+++|-|..-=.| ++-|||++|.-+...
T Consensus 1014 ~f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ged 1070 (1295)
T KOG2080|consen 1014 LFKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGED 1070 (1295)
T ss_pred eeEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCccc
Confidence 455554 888988777765433 46899999987421145 899999999866553
No 16
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=34.47 E-value=1.7e+02 Score=27.56 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=38.4
Q ss_pred cEEEEEEecCCCCceeEEEEEecC----------CCceeeeeEEEeecCCCcEEEeecc
Q 004307 2 QYESEFEVPSGFGEIGAILVENEH----------HKEMYLKDIVLDGLPNGPVNVTCNS 50 (762)
Q Consensus 2 ~~~~~f~~~~~fG~pgav~v~n~~----------~~e~fl~~i~v~~~p~~~~~F~c~s 50 (762)
+|++-+..+.++|..-.|.+.=.. ...||++.|+|+....+.-..-|.+
T Consensus 47 ~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 47 TYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred EEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 578888889999999888776433 3589999999987666766667876
No 17
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=26.02 E-value=41 Score=35.64 Aligned_cols=24 Identities=33% Similarity=0.913 Sum_probs=20.0
Q ss_pred HHHHHHhccccccccccccCCHHHHHHHHH
Q 004307 544 KQWVTDYVNHYYPDKSLVESDEELQAWWTE 573 (762)
Q Consensus 544 ~~fV~~yv~~yY~~D~~V~~D~ELQaW~~E 573 (762)
.+||..||..|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 479999999999 344689999975
No 18
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=23.62 E-value=1.1e+02 Score=30.08 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=69.0
Q ss_pred cccCCHHHHHHHHHHhhccCCCCCCCCCCC-CCCChhHHHHHHhhheeccccccccccccccccccccCCCccccCCCCC
Q 004307 560 LVESDEELQAWWTEIRTVGHGDKKHEPWWP-VLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIA 638 (762)
Q Consensus 560 ~V~~D~ELQaW~~Ei~~~G~~d~~~~p~~p-~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~PN~P~~lr~p~P 638 (762)
-|.+|++|..+++++.++ .....+-.|.+ .+++.+++..++-.||-+|=.... .-.+-..-|+.=|+= +--|+-
T Consensus 11 lIe~dp~l~ml~~~Mf~q-~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~--~~~~~glvG~P~nai--LdwpM~ 85 (141)
T PF12588_consen 11 LIESDPRLYMLFTQMFDQ-PPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSD--ANEPVGLVGFPMNAI--LDWPMG 85 (141)
T ss_pred HHhcCHHHHHHHHHHHhC-cccccCCCCCccccccHHHHHHHHHHHHhhCCcccc--cCCCCCccccChHHH--HHhhcc
Confidence 467999999999999987 32233334677 899999999999999955433222 001122333322221 122443
Q ss_pred CCCCCchHHHHhhcccHHHHHccCCChHHHHHHHHHHH--HhcCCCCCCccccCcCCCCCCCcHHHHHHH
Q 004307 639 TEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILD--VLSTHSPDEEYLGKEIEPAWREDPVINAAF 706 (762)
Q Consensus 639 ~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~--~LS~~~~de~yLG~~~~~~~~~d~~~~~a~ 706 (762)
|. ..+.-| + -|...+.+..+.-.| .|++..+- ..|...+...|++. .+++.+
T Consensus 86 T~----sG~a~F--------~--~p~vN~~lK~ILn~W~~fL~sp~S~-~vL~~~~~~GWfs~-~A~~~l 139 (141)
T PF12588_consen 86 TP----SGYAFF--------L--DPDVNAQLKKILNEWGEFLSSPASR-SVLNTDPPNGWFSP-EALKEL 139 (141)
T ss_pred Ch----HHHHHH--------c--CHHHHHHHHHHHHHHHHHcCChhhh-ccccCCCCCCccCH-HHHHHh
Confidence 33 123212 1 244445555554443 56654433 34665533479984 444443
No 19
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.07 E-value=44 Score=28.48 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.2
Q ss_pred CcccHHHHHHhhCCcccHHHHHhcC
Q 004307 301 SAITTELIEKEIGGMISVEEAIKQK 325 (762)
Q Consensus 301 ~~vt~~~i~~~l~g~~tl~~al~~g 325 (762)
..|..+|+-..|+| .|.++||++|
T Consensus 20 ~~la~dhvL~~LGg-rT~~eAL~~G 43 (63)
T PF11248_consen 20 RSLARDHVLSELGG-RTAAEALEAG 43 (63)
T ss_pred HHHHHhcchhhcCC-cCHHHHHHcC
Confidence 35667888888988 9999999987
No 20
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.18 E-value=2.5e+02 Score=32.60 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=74.2
Q ss_pred hHHHHHHhccCCccCchhhccccchhhcccchHHH--------------HhcccCCCcccccccCCChhHHHH--HHHHh
Q 004307 429 EPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLA--------------RQALVNADGIIESSFSPGKYSMEF--SSVAY 492 (762)
Q Consensus 429 Epf~iAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~A--------------R~~LI~~gG~id~~~~~g~~~~el--~~~~y 492 (762)
+-+.+|..+|=|..-=+..+|.|--..++.||+.= -..=|++=|++.-.-+|+.+.-|+ ++.-|
T Consensus 91 ~~L~~A~q~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY 170 (480)
T KOG2675|consen 91 AFLWVASQKQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFY 170 (480)
T ss_pred HHHHHHHhccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHH
Confidence 44677888888988889999999999999998743 223344556666555577665444 23333
Q ss_pred hccCCCCccCCchHHHh-cCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHHHhccccccccccccCCHHHHHHH
Q 004307 493 DKQWRFDHEALPKDLIS-RGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 571 (762)
Q Consensus 493 ~~~w~f~~~~lP~dL~~-RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~fV~~yv~~yY~~D~~V~~D~ELQaW~ 571 (762)
-+ .-|+. ||.| ..-+ +||+.|+.+| .|||+++
T Consensus 171 ~N----------rvLkEyk~~D----------------------~~hv-----eWvKa~l~l~----------~eL~~YV 203 (480)
T KOG2675|consen 171 TN----------RVLKEYKEKD----------------------PRHV-----EWVKAYLALF----------LELQAYV 203 (480)
T ss_pred HH----------HHHHHhccCC----------------------hhHH-----HHHHHHHHHH----------HHHHHHH
Confidence 32 12222 3332 1111 6999999999 7899999
Q ss_pred HHHhhccCCCCCCC
Q 004307 572 TEIRTVGHGDKKHE 585 (762)
Q Consensus 572 ~Ei~~~G~~d~~~~ 585 (762)
+|-.+-|....++-
T Consensus 204 k~hhtTGl~W~~~g 217 (480)
T KOG2675|consen 204 KEHHTTGLVWNKDG 217 (480)
T ss_pred HHhccccceecCCC
Confidence 99999888776663
Done!