Query 004309
Match_columns 762
No_of_seqs 369 out of 1758
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 4E-205 9E-210 1633.6 38.4 708 1-761 1-744 (785)
2 PTZ00130 heat shock protein 90 100.0 9E-174 2E-178 1499.9 64.1 726 1-760 1-755 (814)
3 PTZ00272 heat shock protein 83 100.0 3E-169 6E-174 1462.1 63.5 645 78-758 3-665 (701)
4 KOG0019 Molecular chaperone (H 100.0 8E-167 2E-171 1374.7 45.4 594 76-761 33-645 (656)
5 COG0326 HtpG Molecular chapero 100.0 5E-165 1E-169 1385.8 55.5 601 76-761 3-622 (623)
6 PRK05218 heat shock protein 90 100.0 2E-141 4E-146 1227.0 60.2 587 77-759 3-610 (613)
7 PRK14083 HSP90 family protein; 100.0 1E-130 2E-135 1129.1 56.3 560 79-761 2-593 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 8E-131 2E-135 1119.0 36.2 474 259-761 1-495 (531)
9 PF13589 HATPase_c_3: Histidin 99.6 2.9E-16 6.3E-21 150.5 6.9 101 98-225 1-104 (137)
10 TIGR00585 mutl DNA mismatch re 99.4 1.2E-12 2.7E-17 141.7 12.4 161 95-284 17-192 (312)
11 COG1389 DNA topoisomerase VI, 99.3 2.1E-11 4.7E-16 134.4 11.3 135 102-257 38-184 (538)
12 COG0323 MutL DNA mismatch repa 99.2 1.9E-11 4.1E-16 143.8 8.1 147 97-275 20-181 (638)
13 PRK04184 DNA topoisomerase VI 99.1 5.5E-10 1.2E-14 128.3 13.9 152 102-277 38-203 (535)
14 PRK00095 mutL DNA mismatch rep 99.1 4.6E-10 1E-14 132.2 11.9 153 95-276 17-180 (617)
15 TIGR01052 top6b DNA topoisomer 99.0 3.4E-09 7.5E-14 120.7 13.3 152 103-277 31-194 (488)
16 PRK14868 DNA topoisomerase VI 98.8 1.1E-08 2.5E-13 120.3 11.4 149 103-276 49-208 (795)
17 PRK14867 DNA topoisomerase VI 98.5 7.4E-07 1.6E-11 104.8 11.3 149 103-275 39-198 (659)
18 PRK05559 DNA topoisomerase IV 98.4 5.9E-07 1.3E-11 106.3 8.5 151 101-275 38-199 (631)
19 PF02518 HATPase_c: Histidine 98.4 4.1E-07 9E-12 82.8 5.3 81 102-209 7-87 (111)
20 TIGR01055 parE_Gneg DNA topois 98.2 2.1E-06 4.5E-11 101.6 8.3 159 101-284 31-202 (625)
21 smart00433 TOP2c Topoisomerase 98.2 1.9E-06 4.1E-11 101.5 7.5 146 104-276 5-164 (594)
22 KOG1979 DNA mismatch repair pr 98.2 7.2E-06 1.6E-10 93.4 10.0 146 98-277 25-187 (694)
23 TIGR01059 gyrB DNA gyrase, B s 98.1 7.6E-06 1.6E-10 97.5 7.9 154 102-283 32-197 (654)
24 PRK05644 gyrB DNA gyrase subun 98.0 7.6E-06 1.6E-10 97.1 7.6 155 103-284 40-207 (638)
25 KOG1978 DNA mismatch repair pr 98.0 6E-06 1.3E-10 95.9 5.4 160 92-283 12-190 (672)
26 PRK14939 gyrB DNA gyrase subun 97.9 2.2E-05 4.7E-10 94.3 9.1 154 102-285 39-208 (756)
27 KOG1977 DNA mismatch repair pr 97.4 7.9E-05 1.7E-09 86.5 2.0 125 101-252 22-149 (1142)
28 cd00075 HATPase_c Histidine ki 97.3 0.00071 1.5E-08 57.9 7.3 85 103-214 3-91 (103)
29 PRK10755 sensor protein BasS/P 97.1 0.0006 1.3E-08 74.2 5.5 101 103-255 250-350 (356)
30 TIGR02916 PEP_his_kin putative 97.0 0.00098 2.1E-08 79.8 6.2 73 104-207 583-655 (679)
31 TIGR02938 nifL_nitrog nitrogen 96.9 0.0018 3.9E-08 72.2 7.2 80 102-206 389-468 (494)
32 PRK10549 signal transduction h 96.9 0.0016 3.5E-08 73.1 6.5 62 137-208 373-434 (466)
33 smart00387 HATPase_c Histidine 96.9 0.0021 4.7E-08 55.8 5.9 81 103-210 8-88 (111)
34 TIGR01386 cztS_silS_copS heavy 96.8 0.002 4.4E-08 71.6 6.6 83 137-253 374-456 (457)
35 PRK11100 sensory histidine kin 96.8 0.003 6.5E-08 70.6 8.0 101 104-254 372-472 (475)
36 PRK11086 sensory histidine kin 96.8 0.003 6.4E-08 72.2 7.9 100 103-255 436-535 (542)
37 PRK11006 phoR phosphate regulo 96.7 0.0022 4.7E-08 72.1 6.3 104 102-254 319-422 (430)
38 PRK10604 sensor protein RstB; 96.7 0.0018 3.8E-08 73.2 5.3 100 104-254 323-422 (433)
39 PRK09470 cpxA two-component se 96.5 0.0037 8.1E-08 69.9 6.4 100 104-254 357-456 (461)
40 PRK15347 two component system 96.5 0.0038 8.2E-08 76.6 6.9 97 104-254 517-613 (921)
41 TIGR01058 parE_Gpos DNA topois 96.5 0.0086 1.9E-07 71.5 9.3 156 104-284 38-205 (637)
42 PRK11466 hybrid sensory histid 96.5 0.0054 1.2E-07 75.4 7.6 81 104-215 565-649 (914)
43 TIGR02966 phoR_proteo phosphat 96.5 0.0039 8.4E-08 65.7 5.5 78 104-207 233-310 (333)
44 PRK10364 sensor protein ZraS; 96.4 0.006 1.3E-07 69.0 7.1 50 104-169 352-401 (457)
45 PRK10815 sensor protein PhoQ; 96.4 0.005 1.1E-07 71.1 6.3 82 138-256 398-479 (485)
46 PRK15053 dpiB sensor histidine 96.4 0.0052 1.1E-07 70.9 6.2 104 104-255 436-539 (545)
47 TIGR02956 TMAO_torS TMAO reduc 96.3 0.0085 1.9E-07 74.0 8.2 83 104-215 583-670 (968)
48 PRK11360 sensory histidine kin 96.3 0.0068 1.5E-07 69.2 6.6 50 104-169 504-554 (607)
49 PRK09303 adaptive-response sen 96.2 0.0088 1.9E-07 66.6 7.0 77 103-207 275-352 (380)
50 PLN03237 DNA topoisomerase 2; 96.1 0.023 5E-07 72.4 10.2 160 103-287 80-260 (1465)
51 PRK11091 aerobic respiration c 96.0 0.017 3.8E-07 70.0 8.7 88 103-216 401-493 (779)
52 PLN03128 DNA topoisomerase 2; 96.0 0.035 7.5E-07 70.1 11.1 159 104-287 56-235 (1135)
53 PHA02569 39 DNA topoisomerase 95.9 0.011 2.3E-07 70.3 5.8 155 104-285 49-222 (602)
54 COG0187 GyrB Type IIA topoisom 95.7 0.046 1E-06 64.2 10.0 161 101-286 37-210 (635)
55 PRK09467 envZ osmolarity senso 95.7 0.014 3.1E-07 65.1 5.5 83 137-254 350-432 (435)
56 PRK11107 hybrid sensory histid 95.5 0.027 5.8E-07 69.1 7.7 86 104-216 412-506 (919)
57 TIGR03785 marine_sort_HK prote 95.5 0.023 5.1E-07 68.7 6.9 79 104-208 601-679 (703)
58 PTZ00108 DNA topoisomerase 2-l 95.4 0.063 1.4E-06 68.7 10.3 163 103-286 60-241 (1388)
59 PRK10841 hybrid sensory kinase 95.4 0.032 6.8E-07 69.6 7.7 78 103-207 565-642 (924)
60 PRK10490 sensor protein KdpD; 95.4 0.023 5.1E-07 70.5 6.4 76 103-206 781-856 (895)
61 PRK10337 sensor protein QseC; 95.4 0.027 5.8E-07 63.2 6.3 71 104-207 356-426 (449)
62 PRK10618 phosphotransfer inter 95.3 0.039 8.5E-07 68.6 7.9 49 104-169 569-620 (894)
63 PRK10600 nitrate/nitrite senso 95.2 0.028 6E-07 65.9 5.9 43 104-163 473-515 (569)
64 PRK13837 two-component VirA-li 94.9 0.12 2.7E-06 63.5 10.8 83 103-217 563-664 (828)
65 KOG0019 Molecular chaperone (H 94.6 0.0015 3.2E-08 75.6 -6.6 213 512-737 375-592 (656)
66 PRK03660 anti-sigma F factor; 94.5 0.095 2.1E-06 50.0 6.8 48 102-162 41-88 (146)
67 PRK10547 chemotaxis protein Ch 94.4 0.16 3.5E-06 61.2 9.6 53 105-167 390-448 (670)
68 COG4191 Signal transduction hi 94.4 0.044 9.6E-07 64.0 4.7 51 105-169 502-552 (603)
69 TIGR01925 spIIAB anti-sigma F 94.3 0.097 2.1E-06 49.5 6.3 46 103-161 42-87 (137)
70 COG3290 CitA Signal transducti 94.0 0.086 1.9E-06 61.2 6.1 73 103-203 430-502 (537)
71 PRK09959 hybrid sensory histid 93.9 0.083 1.8E-06 67.2 6.3 76 103-207 831-911 (1197)
72 PRK09835 sensor kinase CusS; P 93.6 0.1 2.2E-06 58.9 5.7 33 137-169 396-428 (482)
73 PTZ00109 DNA gyrase subunit b; 93.5 0.16 3.4E-06 62.4 7.3 161 102-285 131-356 (903)
74 PRK13557 histidine kinase; Pro 93.5 0.11 2.3E-06 59.2 5.7 20 150-169 326-345 (540)
75 COG0642 BaeS Signal transducti 93.2 0.12 2.5E-06 53.5 4.9 49 102-167 230-278 (336)
76 PRK11073 glnL nitrogen regulat 92.0 0.27 5.8E-06 53.2 6.0 49 102-167 239-299 (348)
77 PRK04069 serine-protein kinase 91.6 0.32 6.9E-06 48.0 5.5 87 103-214 45-131 (161)
78 PF13581 HATPase_c_2: Histidin 91.4 0.45 9.8E-06 44.1 6.1 81 102-212 33-113 (125)
79 COG5000 NtrY Signal transducti 91.3 0.47 1E-05 55.9 7.2 53 106-169 606-660 (712)
80 TIGR01924 rsbW_low_gc serine-p 91.0 0.3 6.4E-06 48.3 4.7 87 103-214 45-131 (159)
81 PRK13560 hypothetical protein; 89.9 0.34 7.4E-06 58.1 4.7 45 104-163 715-762 (807)
82 COG3920 Signal transduction hi 89.4 0.54 1.2E-05 49.2 5.2 47 104-163 126-174 (221)
83 COG4585 Signal transduction hi 89.3 0.29 6.3E-06 54.2 3.3 47 103-166 282-328 (365)
84 PRK11644 sensory histidine kin 88.8 0.43 9.4E-06 55.5 4.4 43 104-163 414-456 (495)
85 KOG0787 Dehydrogenase kinase [ 88.4 1.5 3.2E-05 49.3 7.8 124 102-260 262-385 (414)
86 COG0643 CheA Chemotaxis protei 88.1 0.52 1.1E-05 57.3 4.6 129 104-255 436-573 (716)
87 COG4251 Bacteriophytochrome (l 86.8 0.95 2E-05 53.7 5.4 71 138-220 657-733 (750)
88 COG3850 NarQ Signal transducti 84.5 1.3 2.8E-05 51.7 5.0 43 104-163 485-527 (574)
89 COG2172 RsbW Anti-sigma regula 83.0 3.3 7.2E-05 40.7 6.6 84 102-216 42-128 (146)
90 PRK10935 nitrate/nitrite senso 76.4 3.3 7.2E-05 48.0 5.0 25 138-162 492-517 (565)
91 COG2972 Predicted signal trans 76.2 8.7 0.00019 44.3 8.2 56 98-167 348-405 (456)
92 COG2205 KdpD Osmosensitive K+ 74.4 5.3 0.00011 49.0 5.9 41 134-174 793-833 (890)
93 COG5002 VicK Signal transducti 71.3 5.2 0.00011 44.8 4.6 55 138-202 362-418 (459)
94 PRK13559 hypothetical protein; 67.3 6 0.00013 43.1 4.1 44 104-162 271-318 (361)
95 KOG1845 MORC family ATPases [C 67.0 3.7 8.1E-05 50.2 2.6 95 103-216 149-246 (775)
96 COG4192 Signal transduction hi 62.9 11 0.00025 43.5 5.2 49 104-169 568-619 (673)
97 KOG0355 DNA topoisomerase type 43.7 31 0.00068 42.5 5.0 123 104-252 57-192 (842)
98 COG2865 Predicted transcriptio 43.6 27 0.00058 40.8 4.3 85 96-204 266-354 (467)
99 KOG1845 MORC family ATPases [C 38.5 26 0.00056 43.2 3.3 52 151-217 2-54 (775)
100 COG3851 UhpB Signal transducti 37.2 43 0.00093 38.0 4.4 27 135-161 428-454 (497)
101 COG4564 Signal transduction hi 36.8 37 0.0008 38.0 3.8 58 97-167 352-409 (459)
102 COG1578 Uncharacterized conser 32.0 3E+02 0.0065 30.2 9.5 76 520-602 106-183 (285)
103 COG4813 ThuA Trehalose utiliza 27.4 34 0.00074 35.4 1.6 61 669-732 88-149 (261)
104 PF04122 CW_binding_2: Putativ 26.9 1.8E+02 0.004 25.6 6.1 56 569-627 24-80 (92)
105 smart00481 POLIIIAc DNA polyme 22.3 1.1E+02 0.0024 25.3 3.6 56 546-603 3-60 (67)
106 PF14501 HATPase_c_5: GHKL dom 21.5 1.6E+02 0.0034 26.4 4.6 16 193-208 63-78 (100)
107 PF14372 DUF4413: Domain of un 21.5 1.4E+02 0.003 27.4 4.2 32 513-544 41-72 (101)
108 COG3852 NtrB Signal transducti 21.0 1.3E+02 0.0028 33.6 4.6 56 104-166 245-305 (363)
109 PF15144 DUF4576: Domain of un 21.0 2.3E+02 0.005 25.4 5.2 24 83-117 43-66 (88)
110 TIGR00032 argG argininosuccina 20.4 1.7E+02 0.0036 33.7 5.5 43 136-201 211-253 (394)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-205 Score=1633.59 Aligned_cols=708 Identities=60% Similarity=0.985 Sum_probs=660.2
Q ss_pred CCcccchhHHHHHHHHHhcCCCcccccccccccccccCCCcccccccCCCCCCCCCchhhhhhhhhhhh--------hhh
Q 004309 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESIS--------KRS 72 (762)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 72 (762)
|+.+.+.+++||+.+++++++....++ ..+++++|.+++|++++.++++|++++|+ .|+
T Consensus 1 m~~~~lv~~~~L~~~~~l~ad~~~~~~-------------~~~ee~~~~~~e~sk~e~e~~~ree~si~lDgl~~~q~ke 67 (785)
T KOG0020|consen 1 MRKRTLVSVLLLFGFLFLLADDERKLH-------------ATAEEDLGDVTEGSKTEEEIGGREEESIQLDGLNVSQIKE 67 (785)
T ss_pred CcchhHHHHHHHHHHHHhccccccccc-------------cchhhhccccCCCCcchhhhccccchheecccccHHHHHH
Confidence 788888888888777777776655554 34667799999999999999999999998 889
Q ss_pred ccccccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEE
Q 004309 73 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILS 152 (762)
Q Consensus 73 ~~~~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~ 152 (762)
+|..+++|+||+||+|||+||+||||+|++||||||||||+||++|+|+++|+++..+ +.++++.|+|..|++++.|+
T Consensus 68 lR~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L--~~~~el~ikIK~Dke~klLh 145 (785)
T KOG0020|consen 68 LRSKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVL--GETEELEIKIKADKEKKLLH 145 (785)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHh--CcCcceEEEEeechhhCeee
Confidence 9999999999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCC-----CCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEc
Q 004309 153 IRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-----LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESK 227 (762)
Q Consensus 153 I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~-----~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~ 227 (762)
|+|+|||||++||++||||||+||+++|+++|+..++ .++||||||||||+|+|||+|+|+|+|+++.+|+|+|+
T Consensus 146 i~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESd 225 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESD 225 (785)
T ss_pred EecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeecc
Confidence 9999999999999999999999999999999986544 37999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhh
Q 004309 228 ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKA 307 (762)
Q Consensus 228 ~~~~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (762)
+. +|+|.++|++++++|||+|+|||++++.+||++++|++||++||+||+|||++|.++++++++|.+|+++..++
T Consensus 226 an-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~--- 301 (785)
T KOG0020|consen 226 AN-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEED--- 301 (785)
T ss_pred Cc-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccc---
Confidence 87 99999999999999999999999999999999999999999999999999999999999999987665432211
Q ss_pred hhhhhhhcccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceec
Q 004309 308 EKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHF 387 (762)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~ 387 (762)
..+ +++ ..+|++++++||||+|++++|+|+.+|+.+|||+|+|++|+++||..|||++++|+ .+||+|+||
T Consensus 302 -~~e--d~e----a~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds--~dPma~~HF 372 (785)
T KOG0020|consen 302 -STE--DKE----AAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDS--TDPMAYIHF 372 (785)
T ss_pred -ccc--chh----hhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccc--cCccceeee
Confidence 000 111 11233344469999999999999999999999999999999999999999999999 899999999
Q ss_pred cccccceeeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcch
Q 004309 388 NAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHS 467 (762)
Q Consensus 388 ~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~ 467 (762)
.+||.|+||+|||||+.+|.++|+.|+++...+||||||||||+|+|.++||+||+||||||||+|||||||||+||||+
T Consensus 373 ~aEGeVtFksiLyVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHk 452 (785)
T KOG0020|consen 373 TAEGEVTFKSILYVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHK 452 (785)
T ss_pred eccccEEEEEEEEeCCCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHH
Confidence 99999999999999999999999999878889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHH-HHHHHhHHhhhhcccCHHhHHHHhhhcc
Q 004309 468 SLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTK-FWNEFGKSIKLGIIEDAANRNRLAKLLR 546 (762)
Q Consensus 468 ~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-f~~~f~~~lK~G~~eD~~nr~~l~~LLr 546 (762)
+|++|+|+||||+|+||++++.+ +|.. ||++||++||+|+++|++||.+||+|||
T Consensus 453 llKvIkKKLvrK~LDmikKia~e------------------------~~~d~FW~EFgtniKLGviED~sNr~rLAKLLr 508 (785)
T KOG0020|consen 453 LLKVIKKKLVRKVLDMIKKIAGE------------------------KYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLR 508 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc------------------------ccchHHHHHhccceeeeeeeCcccHHHHHHHHh
Confidence 99999999999999999999987 7777 9999999999999999999999999999
Q ss_pred ceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEee
Q 004309 547 FESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNV 626 (762)
Q Consensus 547 f~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V 626 (762)
|+||+++++.|||++|++|||+.|+.|||++|.|++++++|||+|+|.+|||||||||+||||||||+|++|+||+||||
T Consensus 509 Fqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNV 588 (785)
T KOG0020|consen 509 FQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNV 588 (785)
T ss_pred hhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCc--ch--HHHHHHHHHHHHHHH-hhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccc--
Q 004309 627 SKEGLKLGKDT--KD--KELKESFKELTKWWK-GALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLS-- 699 (762)
Q Consensus 627 ~k~~~~l~~~e--k~--~~~~~~~~~L~~~~k-~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~-- 699 (762)
+|+|+++++++ |+ +..+++|+||++||| .+|+++ |+++.||+||++|||+||++.||||+||+|||++|+++
T Consensus 589 aKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~alkd~-ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~ 667 (785)
T KOG0020|consen 589 AKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKS 667 (785)
T ss_pred HhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhcc
Confidence 99999998776 33 668899999999999 578888 99999999999999999999999999999999999997
Q ss_pred -ccccccccCCceeEEECCCChhHHHHHHhhcCCchhhh--------------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 700 -DASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEVEF--------------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 700 -~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~--------------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
|++.+.|+.+|++|||||+||||+.|++++.+|++|.. +|||.+.||.+|+.||++||++++
T Consensus 668 kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL 744 (785)
T KOG0020|consen 668 KDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSL 744 (785)
T ss_pred CCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhc
Confidence 77777899999999999999999999999999887643 999999999999999999999876
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=9.2e-174 Score=1499.90 Aligned_cols=726 Identities=42% Similarity=0.678 Sum_probs=608.6
Q ss_pred CCcccchhHHHHHHHHHhcCCCcccccccccccccccCCCcccccccCCCCCCCCCchhhhhh--hhhhhhhhhcccccc
Q 004309 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKR--EAESISKRSLRNNAE 78 (762)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e 78 (762)
|+..+.+-+.|++|.| +++++..+|+.- |.+++++.++ |..+.-...|.+.+.. ++|.++ ++.+
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e 66 (814)
T PTZ00130 1 MKLNRVFFCAFVICAL-----QPNWVPQLCNVL--CESDEGKSEE--KEEKEEVKKDRDNIPEIEDGEKPT-----SGIE 66 (814)
T ss_pred Cccceeeeehhhhhhc-----CccchhhhCcee--ecCCCCcccC--CCCcchhhcccccCcccccCCCCC-----cccc
Confidence 5666666555554444 355666666655 6777766443 2333334455555544 334444 4568
Q ss_pred ccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCC
Q 004309 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGI 158 (762)
Q Consensus 79 ~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGi 158 (762)
+|+||||+++||+||+++||||++||||||||||+|||+|+||++++++.++ +...++.|+|..|+++++|+|+||||
T Consensus 67 ~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~--~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 67 QHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred eeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhc--CCCCCceEEEEECCCCCEEEEEECCC
Confidence 8999999999999999999999999999999999999999999999999877 56678999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccchhHHHhhhc-cCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeC
Q 004309 159 GMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (762)
Q Consensus 159 GMt~eeL~~~LgtIa~Sg~~~f~~~~~~-~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~ 237 (762)
|||++||.++|||||+||++.|+++++. +.+.++||||||||||||||||+|+|+||++++.+|+|+|+|+|.|+|.++
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998874 345789999999999999999999999999888899999999999999998
Q ss_pred CCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhhhhccc
Q 004309 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (762)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (762)
+++.+.+|||+|+|||++++.+|++.++|++||++||+||+|||+|+..++..+++++++..+. + +++++++.
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~ 297 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEM--E-----NDPNYDSV 297 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEcccccccccccccccccc--c-----cccccccc
Confidence 7655678999999999999999999999999999999999999999876544444432211000 0 00000010
Q ss_pred CCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeE
Q 004309 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~ 397 (762)
+. ++.+++++++|++++++++|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+|
T Consensus 298 e~----~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~--~dPl~~iH~~~Eg~~~~~~ 371 (814)
T PTZ00130 298 KV----EETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFN--DEPLYHIHFFAEGEIEFKC 371 (814)
T ss_pred cc----cccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCc--cCCceeeeeccCCCeeEEE
Confidence 01 11112346678888888999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHH
Q 004309 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (762)
Q Consensus 398 llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~ 477 (762)
|||||+.+|+++|.. ...+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 372 LLYIP~~ap~~~~~~--~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~ 449 (814)
T PTZ00130 372 LIYIPSRAPSINDHL--FTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIV 449 (814)
T ss_pred EEEecCCCccchhhh--hhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 999999999987651 135789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcC------CCCccccc--ccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhcccee
Q 004309 478 RKALDMIRKIAEEDPDEST------GKDKKDVE--KFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFES 549 (762)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~------~~~~~~~~--~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~s 549 (762)
+|++++|.++++++.++.+ +.++++.. +.....++|++|.+||++||.+||+|+++|+.||++|++||||+|
T Consensus 450 kkil~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~S 529 (814)
T PTZ00130 450 RKILDTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKT 529 (814)
T ss_pred HHHHHHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeee
Confidence 9999999999985222111 11111100 001112378899999999999999999999999999999999999
Q ss_pred cCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccc
Q 004309 550 TKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (762)
Q Consensus 550 s~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~ 629 (762)
|+++ +++||++||+||+++|+.|||++|++++++++|||+|.|+++|||||||+|||||||+++|++|+|++|++|+++
T Consensus 530 s~~~-~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~ 608 (814)
T PTZ00130 530 MLHP-KSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKG 608 (814)
T ss_pred CCCC-CccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccc
Confidence 9873 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCc--ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccccccc
Q 004309 630 GLKLGKDT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQA 705 (762)
Q Consensus 630 ~~~l~~~e--k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~ 705 (762)
+++++..+ ++ +..++++++|++|||++|+++ |.+|++|+||++||||||++++|||++|+|||++|+. +++++.
T Consensus 609 ~~~~~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~~-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~-~~~~~~ 686 (814)
T PTZ00130 609 EITFELTEDEKKKEEKVKKMYKALIDVISDTLRNQ-IFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVN-NSDQIK 686 (814)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHhcCc-ccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhc-cccccc
Confidence 98876322 22 445567999999999999999 9999999999999999999999999999999999863 222234
Q ss_pred ccCCceeEEECCCChhHHHHHHhhcCCchhh--h------------ccCCCCCCHHHHHHHHHHhhcCC
Q 004309 706 YMRGKRVLEINPRHPIIKELRERVVKDPEVE--F------------FSHFLLTGKDDFSNPNSMYTSLK 760 (762)
Q Consensus 706 ~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~--~------------~sG~~leDp~~fa~ri~~~l~~~ 760 (762)
++..+|||||||+||||++|+.+...+++++ . ++||.++||++|++||++||...
T Consensus 687 ~~~~k~iLEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~ 755 (814)
T PTZ00130 687 AMSGQKILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQK 755 (814)
T ss_pred cccCCeEEEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 5678999999999999999987653444431 1 89999999999999999999743
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2.9e-169 Score=1462.10 Aligned_cols=645 Identities=50% Similarity=0.856 Sum_probs=571.1
Q ss_pred cccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCC
Q 004309 78 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG 157 (762)
Q Consensus 78 e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNG 157 (762)
++|+||||+++||+||+||||||++||||||||||+|||+|+||.+++++.++ +..+++.|+|..|+++++|+|.|||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~L~I~DnG 80 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL--GESPRLCIRVVPDKENKTLTVEDNG 80 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhc--CCCCceEEEEEEcCCCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999877 4556789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeC
Q 004309 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (762)
Q Consensus 158 iGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~ 237 (762)
||||++||.++|||||+||++.|+++++.+.+.++|||||||||||||||++|+|+||++++.+|+|+|+|+|.|+|.++
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~ 160 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITST 160 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeC
Confidence 99999999999999999999999988865566789999999999999999999999999877899999999999999987
Q ss_pred CCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhhhhccc
Q 004309 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (762)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (762)
++ ...++||+|+|||++++.+|++.++|++||++||+||+|||+++..++.+.++++++++....+ ++++ ++.
T Consensus 161 ~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~ 233 (701)
T PTZ00272 161 PE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKA----DEDG--EEP 233 (701)
T ss_pred CC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccc----cccc--ccc
Confidence 53 3568999999999999999999999999999999999999999866544433332211100000 0000 000
Q ss_pred CCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeE
Q 004309 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~ 397 (762)
.+.+..+++++++++++++++++|+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+|
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~--~~Pl~~ih~~~eg~~~~~~ 311 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRS 311 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCc--CCCceeeeeccCCceeeEE
Confidence 11011111223456778888889999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHH
Q 004309 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (762)
Q Consensus 398 llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~ 477 (762)
|||||+.+|+++|+. ....++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 312 llyiP~~~~~~~~~~--~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~ 389 (701)
T PTZ00272 312 IMFVPKRAPFDMFEP--NKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIV 389 (701)
T ss_pred EEEeCCCCccchhhh--hhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 999999999999864 234789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCccc
Q 004309 478 RKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLT 557 (762)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~ 557 (762)
+|++++|++||++ +++|.+||++||.+||+|+++|+.||++|++||||+||.++++++
T Consensus 390 ~ki~~~l~~la~~----------------------~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~ 447 (701)
T PTZ00272 390 KKCLEMFDEVAEN----------------------KEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMT 447 (701)
T ss_pred HHHHHHHHHHhhC----------------------HHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCcee
Confidence 9999999999876 469999999999999999999999999999999999998767899
Q ss_pred CHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc
Q 004309 558 SLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT 637 (762)
Q Consensus 558 sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e 637 (762)
||++||+|||++|+.|||++|+|++++++|||+|.|++||||||||+||||||||++|++|+|++|+||++++++++..+
T Consensus 448 sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~ 527 (701)
T PTZ00272 448 TLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESE 527 (701)
T ss_pred eHHHHHHhhccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886322
Q ss_pred --ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeE
Q 004309 638 --KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVL 713 (762)
Q Consensus 638 --k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiL 713 (762)
+. +..++++++|++|||++||++ |.+|++|+||++||||||++++|||++|+|||++|++++...+.++..+|||
T Consensus 528 ~e~~~~~~~~~~~~~L~~~~k~~L~~k-V~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiL 606 (701)
T PTZ00272 528 EEKQQREEEKAACEKLCKTMKEVLGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTM 606 (701)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhCCc-ccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEE
Confidence 12 345668999999999999999 9999999999999999999999999999999999976432223456689999
Q ss_pred EECCCChhHHHHHHhhcCCchhh--h------------ccCCCCCCHHHHHHHHHHhhc
Q 004309 714 EINPRHPIIKELRERVVKDPEVE--F------------FSHFLLTGKDDFSNPNSMYTS 758 (762)
Q Consensus 714 EINP~HPlIk~L~~~~~~d~~d~--~------------~sG~~leDp~~fa~ri~~~l~ 758 (762)
||||+||||++|++++..+++++ . ++||.++||++|++|+++||+
T Consensus 607 EINP~HpiIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~ 665 (701)
T PTZ00272 607 ELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIK 665 (701)
T ss_pred EECCCCHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 99999999999988654444331 1 899999999999999999995
No 4
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-167 Score=1374.68 Aligned_cols=594 Identities=45% Similarity=0.800 Sum_probs=568.2
Q ss_pred cccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEe
Q 004309 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (762)
Q Consensus 76 ~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (762)
..++|.||||+++||+++++++||++++|||||||||+||++|+||.++++|..+ .+++.|+|.+++++++|+|.|
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~----~~~l~I~i~~nk~~~tlti~D 108 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA----LPELEIRIITNKDKRTITIQD 108 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc----ccceeEEeccCCCcceEEEEe
Confidence 3489999999999999999999999999999999999999999999999999854 688999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcccchhHHHhhh-ccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEE
Q 004309 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-TSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAI 234 (762)
Q Consensus 156 NGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~-~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I 234 (762)
+|||||++||.+||||||+||++.|++.++ .+.+.++||||||||||+||||++|+|+|+++++.+|.|+|.++|+|+|
T Consensus 109 tGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v 188 (656)
T KOG0019|consen 109 TGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEI 188 (656)
T ss_pred cCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEE
Confidence 999999999999999999999999999999 5778899999999999999999999999999988899999999999999
Q ss_pred EeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhhhh
Q 004309 235 SEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETE 314 (762)
Q Consensus 235 ~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (762)
..++ ...+||+|+|||+++..+|+++.+|+++|+|||+||.|||++|++
T Consensus 189 ~~~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------------- 237 (656)
T KOG0019|consen 189 AEAS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------------- 237 (656)
T ss_pred eecc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhh----------------------------
Confidence 9864 389999999999998889999999999999999999999999852
Q ss_pred cccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccce
Q 004309 315 KSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~ 394 (762)
.+|..+|||+|+|++||.|||.+|||+++++| ++||++.||++||+++
T Consensus 238 ------------------------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw--~d~lav~hf~~eg~le 285 (656)
T KOG0019|consen 238 ------------------------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDW--DDPLYVLHFKTDGPLS 285 (656)
T ss_pred ------------------------------hhhccCcccccCchhhhHHHHHHHHHhhcccc--cchhhHhhhccccceE
Confidence 38999999999999999999999999999999 9999999999999999
Q ss_pred eeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHH
Q 004309 395 FKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKK 474 (762)
Q Consensus 395 f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k 474 (762)
|++|||||.++|+++|+. .+.++||+||+|||||+|+|.+++|+||+||+|||||+|||||+|||+||++++|++||+
T Consensus 286 frail~vP~rap~~lF~~--~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk 363 (656)
T KOG0019|consen 286 IRSIFYIPKRAPNSMFDM--RKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRK 363 (656)
T ss_pred EEEEEeccccCcchhhhh--hhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHH
Confidence 999999999999999986 366899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHH-HhhhccceecCCC
Q 004309 475 KLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNR-LAKLLRFESTKSD 553 (762)
Q Consensus 475 ~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~-l~~LLrf~ss~~~ 553 (762)
.|++|+++||.++| + ++++|++||++||++||+||++|.+|+.+ +++||||+||++.
T Consensus 364 ~l~~k~l~~~~e~a-~---------------------d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~ 421 (656)
T KOG0019|consen 364 VLPQKILEMFQDLA-K---------------------DAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSG 421 (656)
T ss_pred HHHHHHHHHHHHHh-h---------------------hHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccc
Confidence 99999999999999 4 57899999999999999999999999999 9999999999999
Q ss_pred CcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccC
Q 004309 554 GKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKL 633 (762)
Q Consensus 554 ~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l 633 (762)
++++||++||+||+++|+.||||+|+|+.++++|||+|+++++|+|||||++|+||+++++|.+|+||+|++|+|+++++
T Consensus 422 ~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel 501 (656)
T KOG0019|consen 422 EGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVEL 501 (656)
T ss_pred cccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCC
Q 004309 634 GKDT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRG 709 (762)
Q Consensus 634 ~~~e--k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~ 709 (762)
++++ +. ++.+++|+.||+|||+.|+++ |++|+||+||++||||||+++||||++|+|+|+||++.+.....||.+
T Consensus 502 ~e~ee~~~k~ee~k~efe~lck~mK~iL~~k-VekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~ 580 (656)
T KOG0019|consen 502 PEDDEEKAKDEESKKEFEELCKWMKEILGSK-VEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA 580 (656)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhcCc-eEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc
Confidence 8444 22 667779999999999999998 999999999999999999999999999999999999998888889999
Q ss_pred ceeEEECCCChhHHHHHHhhcCCchhhh-------------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 710 KRVLEINPRHPIIKELRERVVKDPEVEF-------------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 710 kkiLEINP~HPlIk~L~~~~~~d~~d~~-------------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
+++|||||+||||+.|.+++++|+++.. ++||.++||+.|+.||++||++++
T Consensus 581 kk~lEINP~hpivk~L~~~~~~dk~d~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l 645 (656)
T KOG0019|consen 581 KKHLEINPDHPLVKTLRQLRESDKNDTAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGL 645 (656)
T ss_pred cceeeeCCCChHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHh
Confidence 9999999999999999999999988532 999999999999999999999875
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-165 Score=1385.84 Aligned_cols=601 Identities=46% Similarity=0.784 Sum_probs=555.0
Q ss_pred cccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEe
Q 004309 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (762)
Q Consensus 76 ~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (762)
..+++.||+|+++||+||+|||||||+||||||||||+|||+|+||.++++|... ...++++|+|.+|++++||+|+|
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~--~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELG--EGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCcccc--CCCCCceEEEEEcccCCEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999876 66778999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcccchhHHHhhhcc-CCCCccccccccceeeeeeccEEEEEEeeCC-CeeeEEEEcCCCceE
Q 004309 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFA 233 (762)
Q Consensus 156 NGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~-~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~-~~~~~W~s~~~~~f~ 233 (762)
||||||++|++++|||||+|||++|++++++. ++.++||||||||||||||||+|+|+|++++ +.+++|+|+|+|.|+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~yt 160 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYT 160 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceE
Confidence 99999999999999999999999999998754 4789999999999999999999999999986 578899999999999
Q ss_pred EEeCCCCCCCC-CCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhh
Q 004309 234 ISEDTWNEPLG-RGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (762)
Q Consensus 234 I~~~~~~~~~~-~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (762)
|++.++ .+ +||+|+|||+++..+|++.|+|+++|++||+||++||++..++..+
T Consensus 161 v~~~~~---~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~---------------------- 215 (623)
T COG0326 161 VEDIDK---EPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKD---------------------- 215 (623)
T ss_pred EeeccC---CCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeecccc----------------------
Confidence 999753 34 6999999999999999999999999999999999999996543110
Q ss_pred hhcccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceecccccc
Q 004309 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~ 392 (762)
+ .+.+|++||+++|||+|+++++++|+|.+||++++++| ++||.|+|+++||.
T Consensus 216 ------~-------------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~--~~Pl~~~h~~~EG~ 268 (623)
T COG0326 216 ------E-------------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDF--DDPLLWIHNKVEGR 268 (623)
T ss_pred ------c-------------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhccc--CCCeEEEecccccc
Confidence 0 02368999999999999999999999999999999999 99999999999999
Q ss_pred ceeeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHH
Q 004309 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (762)
Q Consensus 393 ~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I 472 (762)
++|++|||||.++|+|+|++ ..++|+|||||||||||+|.+|||+||+||||||||+|||||||||+||+|++++.|
T Consensus 269 ~ey~~ll~iP~~aPfdl~~~---~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~I 345 (623)
T COG0326 269 LEYTALLFIPSKAPFDLFRR---DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAI 345 (623)
T ss_pred eEEEEEEEccCCCCcccccc---cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHH
Confidence 99999999999999999986 558999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhcccee-cC
Q 004309 473 KKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFES-TK 551 (762)
Q Consensus 473 ~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~s-s~ 551 (762)
|+.|++|+++||++||++ +|++|.+||++||.+||+|+++|..||++|++||||.| +.
T Consensus 346 rk~l~kkvl~~L~~La~~---------------------~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~ 404 (623)
T COG0326 346 RKALTKKVLSMLEKLAKD---------------------DPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSD 404 (623)
T ss_pred HHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCC
Confidence 999999999999999999 99999999999999999999999999999999999999 45
Q ss_pred CCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccc
Q 004309 552 SDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGL 631 (762)
Q Consensus 552 ~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~ 631 (762)
+..+++||++||+|||++|+.|||++|++..++++||++|.+++||||||||+|+||++++..+.+|+|++|++|+++++
T Consensus 405 ~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~ 484 (623)
T COG0326 405 SGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDL 484 (623)
T ss_pred CccCcccHHHHHHhcccccceeEEeccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCc-c--h--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccc
Q 004309 632 KLGKDT-K--D--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAY 706 (762)
Q Consensus 632 ~l~~~e-k--~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~ 706 (762)
.+...+ + . ++.+.+|++|++++|++|++. |++|++|.||+++|||++++.++|+.+|+|+|++|+. ..
T Consensus 485 ~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~-vk~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~------~~ 557 (623)
T COG0326 485 DLELLEEEDEADSEEEKKEFKPLLERVKEILGDK-VKDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQ------EV 557 (623)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHhcCc-cceeEeecccCCCcceeecCccchhHHHHHHHHhccc------cC
Confidence 876322 1 2 566678999999999999999 9999999999999999999999999999999998853 23
Q ss_pred cCCceeEEECCCChhHHHHHHhhcCCchhhh----------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 707 MRGKRVLEINPRHPIIKELRERVVKDPEVEF----------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 707 ~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~----------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
+..++||||||+||||++|....+...-... .+|+.++||++|++|+|++|.+.+
T Consensus 558 ~~~k~ilEiNp~h~lv~~L~~~~d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 558 PESKKILEINPNHPLVKKLASLEDEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred CccccceeeCcccHHHHHHHhcccHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 3679999999999999999986511111111 889999999999999999998765
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=1.9e-141 Score=1226.99 Aligned_cols=587 Identities=47% Similarity=0.804 Sum_probs=542.3
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.|+++||+|+++||+||+++||+||++|||||||||+|||+|+|+.+++++.+. ....++.|+|.+|+++++|+|+||
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~--~~~~~~~I~I~~d~~~~~i~I~Dn 80 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY--EGDGDLKIRISFDKEARTLTISDN 80 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc--CCCCCcEEEEEEcCCCCeEEEEEC
Confidence 588999999999999999999999999999999999999999999999988765 456678999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhcc--CCCCccccccccceeeeeeccEEEEEEeeCC--CeeeEEEEcCCCce
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND--DKQYVWESKADGAF 232 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~--~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~--~~~~~W~s~~~~~f 232 (762)
|+|||++|+..+|++||+||+++|+++++.. .+.++||||||||||+||||++|+|.||+.+ +.++.|.+.|++.|
T Consensus 81 G~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~ 160 (613)
T PRK05218 81 GIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY 160 (613)
T ss_pred CCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee
Confidence 9999999999999999999999999988532 3578999999999999999999999999865 46899999999999
Q ss_pred EEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhh
Q 004309 233 AISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (762)
Q Consensus 233 ~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (762)
++.+.+ ..++||+|+|||++++.+|++.++|+++|++||+|+++||++++.
T Consensus 161 ~i~~~~---~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~-------------------------- 211 (613)
T PRK05218 161 TIEEIE---KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE-------------------------- 211 (613)
T ss_pred EEeECC---CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc--------------------------
Confidence 999863 347999999999999999999999999999999999999999531
Q ss_pred hhcccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceecccccc
Q 004309 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~ 392 (762)
+|+++|+.+|+|+++++++++++|..||+.+++++ .+||+|+||+++|+
T Consensus 212 -----------------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~--~~pl~~i~~~~e~~ 260 (613)
T PRK05218 212 -----------------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDF--DDPLFWIHNNVEGP 260 (613)
T ss_pred -----------------------------cceeecCCccceecCCccccHHHHHHHhhhhcccc--cCCcEEEEcccCCc
Confidence 26789999999999999999999999999999998 89999999999999
Q ss_pred ceeeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHH
Q 004309 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (762)
Q Consensus 393 ~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I 472 (762)
+.|+|+||||..+|+++|++ ...++++||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 261 ~~~~gll~iP~~~~~~~~~~---~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i 337 (613)
T PRK05218 261 FEYTGLLYIPKKAPFDLFNR---DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKI 337 (613)
T ss_pred eEEEEEEEeCCCCccchhhh---cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHH
Confidence 99999999999999998864 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCC
Q 004309 473 KKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKS 552 (762)
Q Consensus 473 ~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~ 552 (762)
++.|++|++++|.++|++ ++++|.+||++||.+||+|+++|.+||++|++||||+||+
T Consensus 338 ~~~l~~kv~~~l~~la~~---------------------d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~- 395 (613)
T PRK05218 338 RKAITKKVLDELEKLAKN---------------------DREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH- 395 (613)
T ss_pred HHHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-
Confidence 999999999999999998 8999999999999999999999999999999999999997
Q ss_pred CCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeecccccc
Q 004309 553 DGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK 632 (762)
Q Consensus 553 ~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~ 632 (762)
+++++||++|++||+++|+.|||++|+|++++++|||+|.|+++|+||||+++|+||+|+++|.+|+|++|++|++++++
T Consensus 396 ~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~ 475 (613)
T PRK05218 396 EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLD 475 (613)
T ss_pred CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--Cc-ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccccccccc
Q 004309 633 LGK--DT-KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYM 707 (762)
Q Consensus 633 l~~--~e-k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~ 707 (762)
+++ .+ +. +..++++++|++|++++|+++ |.+|++|.||+++|||||++++|++.+|+|+|++|+ +.++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~-v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~------~~~~ 548 (613)
T PRK05218 476 LGKEDEEEKEEKEEAEEEFKPLLERLKEALGDK-VKDVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAG------QEVP 548 (613)
T ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHhcCc-ceEEEEeccCCCCCeEEEeCccchHHHHHHHHHhhh------hccc
Confidence 764 21 11 445668999999999999999 999999999999999999999999999999999874 2234
Q ss_pred CCceeEEECCCChhHHHHHHhhcCCchhhh------------ccCCCCCCHHHHHHHHHHhhcC
Q 004309 708 RGKRVLEINPRHPIIKELRERVVKDPEVEF------------FSHFLLTGKDDFSNPNSMYTSL 759 (762)
Q Consensus 708 ~~kkiLEINP~HPlIk~L~~~~~~d~~d~~------------~sG~~leDp~~fa~ri~~~l~~ 759 (762)
..+++|||||+||||++|++.. ++++.. ++|+.++||+.|++|+++||..
T Consensus 549 ~~~~~LeiNp~hplI~~L~~~~--d~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~ 610 (613)
T PRK05218 549 ESKPILEINPNHPLVKKLADEA--DEAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLK 610 (613)
T ss_pred ccceEEEEcCCCHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 4789999999999999998743 222221 8889999999999999999964
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=1.2e-130 Score=1129.05 Aligned_cols=560 Identities=23% Similarity=0.337 Sum_probs=491.0
Q ss_pred ccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEE-eCCccEEEEEeCC
Q 004309 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL-DKEKKILSIRDRG 157 (762)
Q Consensus 79 ~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~-d~~~~~L~I~DNG 157 (762)
.++||||+++||++|+++||+||++|||||||||+|||+++|+.. + ..++.|+|.+ |.++++|+|+|||
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-------~~~~~I~I~~~d~~~~~l~I~DnG 71 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-------TAPGRIRIELTDAGGGTLIVEDNG 71 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-------CCCceEEEEEccCCCcEEEEEeCC
Confidence 479999999999999999999999999999999999999987642 1 2346788877 8888999999999
Q ss_pred CCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeeeEEEEcCCCceEEEe
Q 004309 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISE 236 (762)
Q Consensus 158 iGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~~W~s~~~~~f~I~~ 236 (762)
+|||++++.++|++||+||++.|. +. ..+.++||||||||||||||||+|+|.|++. ++.++.|++.++|.|+|+.
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~ 148 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRK 148 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEe
Confidence 999999999999999999998764 21 2346799999999999999999999999997 4679999999999999997
Q ss_pred CCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhhhhcc
Q 004309 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKS 316 (762)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (762)
.+ +...++||+|+|+++++..+|+++++|++++++||.|++|||++++.
T Consensus 149 ~~-~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~------------------------------ 197 (601)
T PRK14083 149 LE-TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE------------------------------ 197 (601)
T ss_pred CC-CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc------------------------------
Confidence 53 34568999999999999999999999999999999999999999531
Q ss_pred cCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCC--HHHHHHHHHHhhcCCCCCCCccceeccccccce
Q 004309 317 ESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVT--EEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt--~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~ 394 (762)
.++||+++|||+|+|++|| +|||.+|||++++ ++||+|+|+++||++.
T Consensus 198 --------------------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~----~~Pl~~ih~~~e~~~~ 247 (601)
T PRK14083 198 --------------------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG----FTPLDVIPLDVPSGGL 247 (601)
T ss_pred --------------------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC----CCchheeeecccchhh
Confidence 1479999999999999999 9999999999986 4799999999999986
Q ss_pred eeEEEE-ecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHH
Q 004309 395 FKAVLF-VPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIK 473 (762)
Q Consensus 395 f~~lly-iP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~ 473 (762)
+++|| ||..+|++ .+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||
T Consensus 248 -~~~Ly~iP~~~~~~--------~~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir 318 (601)
T PRK14083 248 -EGVAYVLPYAVSPA--------ARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVR 318 (601)
T ss_pred -eEEEEecCCCCCcc--------ccCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHH
Confidence 77887 68888873 257999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCC
Q 004309 474 KKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSD 553 (762)
Q Consensus 474 k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~ 553 (762)
+.|++|++++|+++|++ ++++|.+||++||.+||+|+++|.+|+++|++||||+||++
T Consensus 319 ~~i~kki~~~L~~la~~---------------------d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~~- 376 (601)
T PRK14083 319 EELGEAIRKWLIGLATT---------------------DPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTDG- 376 (601)
T ss_pred HHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCCC-
Confidence 99999999999999999 89999999999999999999999999999999999999985
Q ss_pred CcccCHHHHHhhccCCCceEEEEeCC-CHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhh-cCCcceEeeccccc
Q 004309 554 GKLTSLDQYISRMKAGQKDIFYITGA-NKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMD-YEDKKFQNVSKEGL 631 (762)
Q Consensus 554 ~~~~sL~eYv~rmke~Q~~IYY~~g~-s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~e-f~gkkf~~V~k~~~ 631 (762)
.+||+||++|| +.|||++|. ++++++ +.|++||+|||+|++||||+++++|.+ |+|++|++|+++++
T Consensus 377 --~~sL~eY~~r~----~~IyY~~~~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~ 445 (601)
T PRK14083 377 --RMTLAEIRRRH----GVIRYTSSVDEFRQLA-----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAEL 445 (601)
T ss_pred --CcCHHHHHHhC----CeEEEEcCHHHHHHHH-----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhh
Confidence 59999999997 489999996 788886 799999999999999999999999999 99999999999877
Q ss_pred c--CCCCcchHHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhc-cccc-------
Q 004309 632 K--LGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQT-LSDA------- 701 (762)
Q Consensus 632 ~--l~~~ek~~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~-~~~~------- 701 (762)
. +...+ ...++++++|++|++++|+++.|..|++|.||+++|||||+++ +++|+|+|+++. ..++
T Consensus 446 ~~~~~~~~--~~~~~~~~~l~~~~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e---~~~~~~~m~~~~~~~~~~~~~~l~ 520 (601)
T PRK14083 446 TDRLEPLT--PEEELALRPFLAEAREVLAPFGCDVVIRHFEPADLPALYLHDR---AAQHSREREEAVEEADDLWADILG 520 (601)
T ss_pred hhhccccc--hhhHHHHHHHHHHHHHHhCccceEEEEEcCCCCCCCEEEEeCc---hhHHHHHHHhhhhhcccchhhhhh
Confidence 4 43212 3345689999999999999974555688999999999999988 456777775421 1110
Q ss_pred -ccccccCCceeEEECCCChhHHHHHHhhcCCchhhh------------ccCCCCC--CHHHHHHHHHHhhcCCC
Q 004309 702 -SKQAYMRGKRVLEINPRHPIIKELRERVVKDPEVEF------------FSHFLLT--GKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 702 -~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~------------~sG~~le--Dp~~fa~ri~~~l~~~~ 761 (762)
+.+.++..+++|||||+||||++|.+. .++.... .+|++++ +|+.|+.++++||.+++
T Consensus 521 ~~~~~~~~~~~~LeiN~~hpli~~l~~~--~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l 593 (601)
T PRK14083 521 SLDESQPAPRARLVLNLRNPLVRRLATL--GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELAL 593 (601)
T ss_pred hhhhcccccCeEEEECCCCHHHHHHHhc--cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 111344578999999999999999874 3333211 7999999 99999999999998765
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=7.5e-131 Score=1119.04 Aligned_cols=474 Identities=57% Similarity=0.979 Sum_probs=396.5
Q ss_pred ccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhhhhhcccCCCCcc--c-cccccCCCccc
Q 004309 259 EYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSESESEDE--D-EDSEKKPKTKT 335 (762)
Q Consensus 259 e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~k~ 335 (762)
+||++++|++||+|||+||+|||++|..+++++++++++++.++++.+ +++..++++... ++. + +.++++|++|+
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~-~~~~~~~~~~~~-e~~~~eee~~~~~~k~k~ 78 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKE-EEEKKEEEEEKV-EEEDEEEEKEEKKPKTKK 78 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT--TT--------S-SEEEE----S-TTEEEEE
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhh-hccccccccccc-cccccccccccccccccc
Confidence 699999999999999999999999999998887776533211111100 000000011111 111 1 12345678889
Q ss_pred ceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhc
Q 004309 336 VKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYN 415 (762)
Q Consensus 336 ~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~ 415 (762)
+++++|+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|+.+
T Consensus 79 ~~~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~--~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~-- 154 (531)
T PF00183_consen 79 VKETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDY--DDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND-- 154 (531)
T ss_dssp CCEEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTS--S-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS--
T ss_pred cccceeecccccccCcccccchhccchHHHHHHHHHhhhcc--cCchhheeccccccceeeEEEEeCCCCchhhhhhh--
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999998763
Q ss_pred ccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 004309 416 TNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDES 495 (762)
Q Consensus 416 ~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~ 495 (762)
...++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||++|+|||+++|++|+++
T Consensus 155 ~~~~~ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d----- 229 (531)
T PF00183_consen 155 KKKNGIKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKD----- 229 (531)
T ss_dssp TT--SEEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred hccccceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEE
Q 004309 496 TGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFY 575 (762)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY 575 (762)
+++|.+||++||.+||+||++|..||++|++||||+||+++++++||++|++|||++|+.|||
T Consensus 230 -----------------~e~y~~f~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY 292 (531)
T PF00183_consen 230 -----------------REKYEKFWKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYY 292 (531)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEE
T ss_pred -----------------HHHHHHHHHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceE
Confidence 679999999999999999999999999999999999999888999999999999999999999
Q ss_pred EeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc--ch--HHHHHHHHHHHH
Q 004309 576 ITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTK 651 (762)
Q Consensus 576 ~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~ 651 (762)
++|+|++++++|||+|+|++||||||||++|||||||++|++|+|++|++|++++++|++.+ +. +..+++|++|++
T Consensus 293 ~~g~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~ 372 (531)
T PF00183_consen 293 LTGESREEAEQSPYLEAFKKKGYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTE 372 (531)
T ss_dssp EESSSHHHHHTSGGGHHHHHCT--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHH
T ss_pred EecchHHHHhhccchhhHHhhCceEEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987544 22 667889999999
Q ss_pred HHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeEEECCCChhHHHHHHhhcC
Q 004309 652 WWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVK 731 (762)
Q Consensus 652 ~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~ 731 (762)
|||++||++ |.+|++|.||++||||||++++|||++|||||+||++++++++.++..++||||||+||||++|++++..
T Consensus 373 ~~k~~L~~k-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~ 451 (531)
T PF00183_consen 373 WLKELLGDK-VEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEK 451 (531)
T ss_dssp HHHHHHTTS-CSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHC
T ss_pred HHHhhhhhh-hheecccccccCCcceeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcc
Confidence 999999999 9999999999999999999999999999999999998776666778889999999999999999999877
Q ss_pred Cchhhh--------------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 732 DPEVEF--------------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 732 d~~d~~--------------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
++++.. ++||.++||++|++|+++||++.+
T Consensus 452 d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l 495 (531)
T PF00183_consen 452 DEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSL 495 (531)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhc
Confidence 665432 999999999999999999998765
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.63 E-value=2.9e-16 Score=150.46 Aligned_cols=101 Identities=40% Similarity=0.585 Sum_probs=76.1
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEe-CCccEEEEEeCCCCCCHHHHHHHHHHHhccc
Q 004309 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (762)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg 176 (762)
|+. +.+|+|||+||+||.+. .+.|.|..+ .+...|.|.|||.||+.++|.. +++++.|+
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~------------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~ 60 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT------------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSS 60 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH------------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTH
T ss_pred CcH-HHHHHHHHHHHHHccCC------------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCC
Confidence 666 89999999999999874 145666555 2457899999999999999998 77899887
Q ss_pred chhHHHhhhccCCCCcccccccc-ceeeeeeccEEEEEEeeCCC-eeeEEE
Q 004309 177 TSAFVEKMQTSGDLNLIGQFGVG-FYSVYLVADYVEVISKHNDD-KQYVWE 225 (762)
Q Consensus 177 ~~~f~~~~~~~~~~~~IGqFGIG-FyS~FmVadkV~V~Sk~~~~-~~~~W~ 225 (762)
+... + ....+|+||+| ++|+|+++++++|+|++.+. ..+.|.
T Consensus 61 k~~~--~-----~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~ 104 (137)
T PF13589_consen 61 KKSE--K-----DRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTID 104 (137)
T ss_dssp HHHH--H-----HGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEE
T ss_pred CCch--h-----hhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEE
Confidence 6421 1 23569999999 88999999999999998743 344443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=1.2e-12 Score=141.74 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=107.3
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCcc-EEEEEeCCCCCCHHHHHHHHHHHh
Q 004309 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK-ILSIRDRGIGMTKEDLIKNLGTIA 173 (762)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~-~L~I~DNGiGMt~eeL~~~LgtIa 173 (762)
.....++..+|+|||+||.||.+ . .|.|.+..++. .|+|.|||.||+.+++...+...+
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a------------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 76 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGA------------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHA 76 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCC
Confidence 45567899999999999999953 1 34444444444 499999999999999987554444
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEee-C-CCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEE
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-N-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~-~-~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (762)
.|....+. .+ ......|.+|.|++|...+| +|+|+|++ . ++.++.|...|. .+.... ....++||+|++
T Consensus 77 tsk~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~~-~~~~~~GTtV~v 147 (312)
T TIGR00585 77 TSKIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEIK-PAPRPVGTTVEV 147 (312)
T ss_pred cCCCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCcccc-cccCCCccEEEE
Confidence 44322221 11 23456899999999999998 89999997 3 456788875443 222211 134579999999
Q ss_pred E-ec---ccccccc-----cHHHHHHHHHHHc---CCCCcceEEe
Q 004309 252 H-LR---DEAGEYL-----EESKLKELVKKYS---EFINFPIYIW 284 (762)
Q Consensus 252 ~-Lk---~~~~e~l-----~~~~l~~likkys---~fi~~PI~l~ 284 (762)
. |- +..+.|+ +-..++.++.+|+ ..+.|.++.+
T Consensus 148 ~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 148 RDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred chhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 6 11 1111122 2367999999998 4556777664
No 11
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.26 E-value=2.1e-11 Score=134.38 Aligned_cols=135 Identities=24% Similarity=0.333 Sum_probs=94.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEe-CCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f 180 (762)
...+||||.||.|||+.. +..|.+.|+|..- .+-.++.|.|||+|++.+.+.+.||++..+++-
T Consensus 38 ~~tv~ElV~NSLDA~eea-------------GILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKf-- 102 (538)
T COG1389 38 TTTVHELVTNSLDACEEA-------------GILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKF-- 102 (538)
T ss_pred HHHHHHHHhcchhhHHhc-------------CCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchh--
Confidence 458899999999999842 3346677777643 455679999999999999999999999887653
Q ss_pred HHhhhccCCCCccccccccceeeeeec-----cEEEEEEeeCC-CeeeEEEE--cCC-CceEEEeC--CCCCCCCCCeEE
Q 004309 181 VEKMQTSGDLNLIGQFGVGFYSVYLVA-----DYVEVISKHND-DKQYVWES--KAD-GAFAISED--TWNEPLGRGTEI 249 (762)
Q Consensus 181 ~~~~~~~~~~~~IGqFGIGFyS~FmVa-----dkV~V~Sk~~~-~~~~~W~s--~~~-~~f~I~~~--~~~~~~~~GT~I 249 (762)
-. ..+..||+|||.-+|.+.| ..|.|.|+..+ +..|..+- +.+ .+-.|... .......|||+|
T Consensus 103 h~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~V 176 (538)
T COG1389 103 HR------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRV 176 (538)
T ss_pred hh------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEE
Confidence 11 2355799999987666654 88999998864 44543322 111 11122111 112234799999
Q ss_pred EEEecccc
Q 004309 250 RLHLRDEA 257 (762)
Q Consensus 250 ~L~Lk~~~ 257 (762)
.|+++..+
T Consensus 177 el~~~~~~ 184 (538)
T COG1389 177 ELELKGVW 184 (538)
T ss_pred EEEecccc
Confidence 99999875
No 12
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.9e-11 Score=143.83 Aligned_cols=147 Identities=22% Similarity=0.338 Sum_probs=105.6
Q ss_pred CCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccE-EEEEeCCCCCCHHHHHHHHHHHhcc
Q 004309 97 LYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKI-LSIRDRGIGMTKEDLIKNLGTIAKS 175 (762)
Q Consensus 97 LYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~-L~I~DNGiGMt~eeL~~~LgtIa~S 175 (762)
.-..|..++||||.||.||.+ .+|+|.++.++.. |.|+|||+||+++||.-.+...|+|
T Consensus 20 VIerPaSVVKELVENSlDAGA--------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 20 VIERPASVVKELVENSLDAGA--------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred eeecHHHHHHHHHhcccccCC--------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 444789999999999999975 3688888887765 9999999999999999999999998
Q ss_pred cchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCC-CeeeEEEEcCCCce-EEEeCCCCCCCCCCeEEEEE-
Q 004309 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAF-AISEDTWNEPLGRGTEIRLH- 252 (762)
Q Consensus 176 g~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~-~~~~~W~s~~~~~f-~I~~~~~~~~~~~GT~I~L~- 252 (762)
.-+.+-+ +. ...-.|--|=.+.|.-.| .+++|+|+..+ ..++.|...|++.- ++.+. ..+.||+|++.
T Consensus 80 KI~~~~D-L~---~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~~~~p~----a~~~GTtVeV~d 150 (638)
T COG0323 80 KIASLED-LF---RIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEVTVKPA----AHPVGTTVEVRD 150 (638)
T ss_pred cCCchhH-HH---HhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCcccccccCC----CCCCCCEEEehH
Confidence 6554321 10 112234444466666666 79999999654 46777777776433 34432 34569999983
Q ss_pred -----------ecccccccccHHHHHHHHHHHcC
Q 004309 253 -----------LRDEAGEYLEESKLKELVKKYSE 275 (762)
Q Consensus 253 -----------Lk~~~~e~l~~~~l~~likkys~ 275 (762)
+|.+..|| .+|.++|++|+-
T Consensus 151 LF~NtPaRrKflks~~~E~---~~i~~vv~r~AL 181 (638)
T COG0323 151 LFYNTPARRKFLKSEKTEF---GHITELINRYAL 181 (638)
T ss_pred hhccChHHHHhhcccHHHH---HHHHHHHHHHHh
Confidence 44444444 789999999974
No 13
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.11 E-value=5.5e-10 Score=128.34 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=98.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEe---CCccEEEEEeCCCCCCHHHHHHHHHHHhcccch
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d---~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~ 178 (762)
...|+|||+||.||++.. +..+.+.|.+... .+...|+|.|||+||+.+++...|+....+++
T Consensus 38 ~qVLkNLIeNAIDa~~~~-------------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK- 103 (535)
T PRK04184 38 YTTVKELVDNSLDACEEA-------------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK- 103 (535)
T ss_pred HHHHHHHHHHHHHHhhhc-------------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc-
Confidence 457889999999998631 1113345555442 22356999999999999999988877644332
Q ss_pred hHHHhhhccCCCCccccccccceeeeeecc-----EEEEEEeeCCCe-eeEEEEc-----CCCceEEEeCCCCCCCCCCe
Q 004309 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGT 247 (762)
Q Consensus 179 ~f~~~~~~~~~~~~IGqFGIGFyS~FmVad-----kV~V~Sk~~~~~-~~~W~s~-----~~~~f~I~~~~~~~~~~~GT 247 (762)
|. ......|++|+|+.+|.+++. .+.|.|+..++. ++.+.-. ..|. .+..........+||
T Consensus 104 -~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~~~~~GT 175 (535)
T PRK04184 104 -FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDWDRWHGT 175 (535)
T ss_pred -cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCCCCCCCE
Confidence 10 012456999999999988865 589999876544 5544432 1121 111111112347899
Q ss_pred EEEEEecccccccccHHHHHHHHHHHcCCC
Q 004309 248 EIRLHLRDEAGEYLEESKLKELVKKYSEFI 277 (762)
Q Consensus 248 ~I~L~Lk~~~~e~l~~~~l~~likkys~fi 277 (762)
+|.+.+..+.. ....++.++|++++-.-
T Consensus 176 ~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 176 RVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred EEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 99999886542 22678999999987543
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.08 E-value=4.6e-10 Score=132.19 Aligned_cols=153 Identities=22% Similarity=0.363 Sum_probs=102.4
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc-cEEEEEeCCCCCCHHHHHHHHHHHh
Q 004309 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (762)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~LgtIa 173 (762)
.....++..+++|||+||.||.+ . .|.|.+..++ ..|+|.|||.||+.+++...+...+
T Consensus 17 gevI~~~~svvkElveNsiDAga------------------t--~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ 76 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGA------------------T--RIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHA 76 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCC------------------C--EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccC
Confidence 45567899999999999999964 1 4555554333 5799999999999999998777666
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCC-CeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEE
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~-~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (762)
.|....+ +.+. ...-.|..|.|+.|.-.|+ +++|+|+..+ +.+|.+.-.++..-.+.+ ....+||+|++.
T Consensus 77 tsKi~~~-~dl~---~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~ 147 (617)
T PRK00095 77 TSKIASL-DDLE---AIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVR 147 (617)
T ss_pred CCCCCCh-hHhh---ccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCCEEEec
Confidence 5543322 1111 2245799999998888886 8999999864 456666555442222222 124689999995
Q ss_pred -e--c-ccccccc-----cHHHHHHHHHHHcCC
Q 004309 253 -L--R-DEAGEYL-----EESKLKELVKKYSEF 276 (762)
Q Consensus 253 -L--k-~~~~e~l-----~~~~l~~likkys~f 276 (762)
| + +....|+ +-..|.+++++|+-.
T Consensus 148 ~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 148 DLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred hhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 1 1 1111222 335788899988754
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.98 E-value=3.4e-09 Score=120.71 Aligned_cols=152 Identities=22% Similarity=0.352 Sum_probs=95.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC-ccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
..++|||.||+||++.. +..+.+.|.+..... ...|+|.|||.||+.+++...|+...++++. .
T Consensus 31 ~VlkELVeNAIDA~~~~-------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--~ 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEA-------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--H 95 (488)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc--c
Confidence 36789999999998621 111233444432222 2379999999999999999988875544331 0
Q ss_pred HhhhccCCCCccccccccceeeeeecc-----EEEEEEeeCCCe-eeEEEEc-----CCCceEEEeCCCCCCCCCCeEEE
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGTEIR 250 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVad-----kV~V~Sk~~~~~-~~~W~s~-----~~~~f~I~~~~~~~~~~~GT~I~ 250 (762)
...+..|++|+|+.++.+++. .++|.|+..+.. ++..... ..|. .+...+.+....+||+|+
T Consensus 96 ------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~ 168 (488)
T TIGR01052 96 ------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIE 168 (488)
T ss_pred ------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEEE
Confidence 123446999999999988885 499999986443 4444432 1222 111111111225799999
Q ss_pred EEecccccccccHHHHHHHHHHHcCCC
Q 004309 251 LHLRDEAGEYLEESKLKELVKKYSEFI 277 (762)
Q Consensus 251 L~Lk~~~~e~l~~~~l~~likkys~fi 277 (762)
+.+......+ ...++.+++++++-.-
T Consensus 169 v~f~~~~~r~-~k~~i~e~l~~~Al~n 194 (488)
T TIGR01052 169 LEFKGVSYRR-SKQGVYEYLRRTAVAN 194 (488)
T ss_pred EEECCceeec-cHHHHHHHHHHHHhhC
Confidence 9865533221 3478999999987543
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.85 E-value=1.1e-08 Score=120.28 Aligned_cols=149 Identities=23% Similarity=0.315 Sum_probs=96.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|+|||.||+||+.. . +..+.+.|.|........|+|.|||+||+.+++...|...+++++ |.
T Consensus 49 tVLkNLIeNALDAs~~--------~-----gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEE--------A-----GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH- 112 (795)
T ss_pred HHHHHHHHHHHHhCcc--------c-----CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc-
Confidence 4677999999999752 0 111234444433222346999999999999999998888775543 21
Q ss_pred hhhccCCCCccccccccceeeeeecc-----EEEEEEeeCC-CeeeEEEE--cCCC-ceEE--EeCCCCCCCCCCeEEEE
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHND-DKQYVWES--KADG-AFAI--SEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVad-----kV~V~Sk~~~-~~~~~W~s--~~~~-~f~I--~~~~~~~~~~~GT~I~L 251 (762)
....-.|+.|+|+-++.+++. .+.|+|+..+ ..++.|.- +++. .-.| .... .....+||+|++
T Consensus 113 -----~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~-~~~~~~GT~IeV 186 (795)
T PRK14868 113 -----AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT-TWDRPHGTRIEL 186 (795)
T ss_pred -----ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec-ccCCCCceEEEE
Confidence 011335899999999888875 4899999764 34654443 3321 1111 1111 123579999999
Q ss_pred EecccccccccHHHHHHHHHHHcCC
Q 004309 252 HLRDEAGEYLEESKLKELVKKYSEF 276 (762)
Q Consensus 252 ~Lk~~~~e~l~~~~l~~likkys~f 276 (762)
.|.-+ |....+|.++|++++--
T Consensus 187 ~Lf~N---~pAR~kI~eyl~r~Al~ 208 (795)
T PRK14868 187 EMEAN---MRARQQLHDYIKHTAVV 208 (795)
T ss_pred EEEcc---CchhhhHHHHHHHHHhh
Confidence 97653 44467788888887643
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.46 E-value=7.4e-07 Score=104.83 Aligned_cols=149 Identities=19% Similarity=0.274 Sum_probs=87.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC-ccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
..++|||.||.||+... +..+.+.|.|..... .-.|+|.|||.||+.+++...|+..-.+++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~-------------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~ 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEA-------------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MH 103 (659)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--cc
Confidence 46789999999998621 111234444433222 235999999999999999998876432221 10
Q ss_pred HhhhccCCCCccccccccceeeeeeccE-----EEEEEeeCCCeee--EEEEc---CCCceEEEeCCCCCCCCCCeEEEE
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDKQY--VWESK---ADGAFAISEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadk-----V~V~Sk~~~~~~~--~W~s~---~~~~f~I~~~~~~~~~~~GT~I~L 251 (762)
.-....|+.|+|+.++-+++.. +.|.|+..++..+ .|... .+|.. +.... .....+||+|++
T Consensus 104 ------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I-~~~~~-~~~~~~GT~Ie~ 175 (659)
T PRK14867 104 ------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDI-VSHKV-REGFWRGTRVEG 175 (659)
T ss_pred ------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCee-ccccc-CCCCCCCcEEEE
Confidence 0123458999999888766644 6888887544432 22221 12221 11100 123478999997
Q ss_pred EecccccccccHHHHHHHHHHHcC
Q 004309 252 HLRDEAGEYLEESKLKELVKKYSE 275 (762)
Q Consensus 252 ~Lk~~~~e~l~~~~l~~likkys~ 275 (762)
.+++-...-. +..+.+++++++-
T Consensus 176 ~V~dLFynR~-E~~i~e~l~r~AL 198 (659)
T PRK14867 176 EFKEVTYNRR-EQGPFEYLRRISL 198 (659)
T ss_pred EEeeceechh-hHHHHHHHHHHHH
Confidence 6654211111 2247888888764
No 18
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.40 E-value=5.9e-07 Score=106.32 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=95.3
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHH
Q 004309 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTI 172 (762)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~LgtI 172 (762)
....++|||.||+|++.. +.. -.|.|.++.+ ..|+|.|||.||+.+.+.. .|+++
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a--~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~l 100 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHG--KRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKL 100 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCC--CEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeec
Confidence 345788999999999731 112 3566666655 4899999999999998876 56664
Q ss_pred hcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCe-eeEEEEcCCCceEEEeCCCCCCCCCCeEEEE
Q 004309 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 173 a~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (762)
-.+|+ |-. ......-|..|+|..++=.++.+++|.|+..+.. ...|+ .|...-.+..........+||+|+.
T Consensus 101 hagsK--f~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~f 173 (631)
T PRK05559 101 HAGGK--FSN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTRVRF 173 (631)
T ss_pred cccCc--cCC----ccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcEEEE
Confidence 33332 211 1112457999999999999999999999975432 23443 2211111111111111468999999
Q ss_pred Eecccc--cccccHHHHHHHHHHHcC
Q 004309 252 HLRDEA--GEYLEESKLKELVKKYSE 275 (762)
Q Consensus 252 ~Lk~~~--~e~l~~~~l~~likkys~ 275 (762)
.....- ..-.+...|.+.++.++-
T Consensus 174 ~PD~~iF~~~~~~~~~i~~~l~~~A~ 199 (631)
T PRK05559 174 WPDPKIFDSPKFSPERLKERLRSKAF 199 (631)
T ss_pred EECHHHcCCcccCHHHHHHHHHHHHh
Confidence 643211 112356778888988864
No 19
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.38 E-value=4.1e-07 Score=82.77 Aligned_cols=81 Identities=28% Similarity=0.423 Sum_probs=59.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
...|.|||+||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+ .
T Consensus 7 ~~il~~ll~Na~~~~~~----------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~-~---- 65 (111)
T PF02518_consen 7 RQILSELLDNAIKHSPE----------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS-D---- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHH----------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS-S----
T ss_pred HHHHHHHHHHHHHHhcC----------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc-c----
Confidence 34788999999999863 13456666666667789999999999999998754322211 1
Q ss_pred HhhhccCCCCccccccccceeeeeeccE
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADY 209 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadk 209 (762)
.+....+++|+|++.|..++++
T Consensus 66 ------~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 ------KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp ------SSSGGSSSSSHHHHHHHHHHHH
T ss_pred ------ccccccCCCChHHHHHHHHHHH
Confidence 1234567799999999888765
No 20
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.24 E-value=2.1e-06 Score=101.56 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=96.4
Q ss_pred chhHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH--------HHHHHHH
Q 004309 101 KDIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGT 171 (762)
Q Consensus 101 ~~ifLRELIqNA~D-A~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~Lgt 171 (762)
+...+.|||.||+| |++ +.. -.|.|.++.+ +.|+|.|||.||+.++ +.-.|++
T Consensus 31 ~~~lv~ElvdNsiDE~~a---------------g~a--~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALA---------------GFA--SIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhc---------------CCC--CEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 46689999999999 221 111 2566666655 7899999999999988 6655544
Q ss_pred HhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCc-eEEEeCCCCCCCCCCeEEE
Q 004309 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIR 250 (762)
Q Consensus 172 Ia~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~ 250 (762)
.-.+|+ | ....-...-|.-|+|..|+=.++.+++|.|+..+.. |.+...++.. -.+..........+||+|+
T Consensus 93 lhagsK--~----~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~ 165 (625)
T TIGR01055 93 LHAGGK--F----SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVH 165 (625)
T ss_pred ccccCC--C----CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEE
Confidence 433332 1 111112347999999999999999999999975433 4443333211 0111110111235899999
Q ss_pred EEecccc--cccccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 251 L~Lk~~~--~e~l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
..-...- ..-.+...|.++++.++-.. ..-|.++
T Consensus 166 F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~ 202 (625)
T TIGR01055 166 FTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFE 202 (625)
T ss_pred EEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEe
Confidence 8533211 11124577888888876543 2444444
No 21
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.22 E-value=1.9e-06 Score=101.46 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=88.2
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHH-------HHHHHHhccc
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSG 176 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~LgtIa~Sg 176 (762)
.++|||.||+||... +. --.|.|.++.++ .|+|.|||.||+.+... +.+.++...|
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~--at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag 67 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GY--MDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAG 67 (594)
T ss_pred EEeeehhcccchhcc--------------CC--CCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhccc
Confidence 578999999999731 11 235777776654 99999999999953321 1222333222
Q ss_pred chhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCce-E-EEeCCCCCCCCCCeEEEEEec
Q 004309 177 TSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-A-ISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 177 ~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f-~-I~~~~~~~~~~~GT~I~L~Lk 254 (762)
.+ |- .......-|..|+|..|+-.++.+++|.|+..+. .|.+....+|.- + +... +....+||+|+. .
T Consensus 68 ~k-fd----~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~~~~~~~~~--~~~~~~GT~V~F--~ 137 (594)
T smart00433 68 GK-FD----DDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGKPLSEPKII--GDTKKDGTKVTF--K 137 (594)
T ss_pred CC-CC----CCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCeECccceec--CCCCCCCcEEEE--E
Confidence 21 21 0111235799999999999999999999998643 343333221210 1 1111 123478999995 3
Q ss_pred ccccccc-----cHHHHHHHHHHHcCC
Q 004309 255 DEAGEYL-----EESKLKELVKKYSEF 276 (762)
Q Consensus 255 ~~~~e~l-----~~~~l~~likkys~f 276 (762)
++..-|. +...|.+.++.++-.
T Consensus 138 Pd~~~F~~~~~~~~~~i~~rl~~~A~l 164 (594)
T smart00433 138 PDLEIFGMTTDDDFELLKRRLRELAFL 164 (594)
T ss_pred ECHHHhCCcccchHHHHHHHHHHHHhc
Confidence 4443343 346788888888633
No 22
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.16 E-value=7.2e-06 Score=93.44 Aligned_cols=146 Identities=29% Similarity=0.369 Sum_probs=97.8
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc-cEEEEEeCCCCCCHHHHHHHHHHHhccc
Q 004309 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (762)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~LgtIa~Sg 176 (762)
-.-|.-+|.|||.|+.||.. ..|.|.+-.++ +.|.|+|||.|+-++||.-..-+.+.|.
T Consensus 25 I~RP~NAlKEliENSLDA~S--------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 25 IQRPVNALKELIENSLDANS--------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred hhchHHHHHHHHhccccCCC--------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 34578899999999999953 36788776666 4578999999999999996555556664
Q ss_pred chhHHHhhhccCCCCccccccc---cceeeeeeccEEEEEEeeCCCe-eeEEEEcCCCceEEEeCCCCCCCCCCeEEEEE
Q 004309 177 TSAFVEKMQTSGDLNLIGQFGV---GFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (762)
Q Consensus 177 ~~~f~~~~~~~~~~~~IGqFGI---GFyS~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (762)
-..| .|...|..||. .+ |+..-+-+|+|+||..++. +|. .+..+|... ..|.+-....||.|++.
T Consensus 85 L~kF-------EDL~~lsTyGFRGEAL-ASiShVA~VtV~TK~~~~~cayr-asY~DGkm~--~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 85 LTKF-------EDLFSLSTYGFRGEAL-ASISHVAHVTVTTKTAEGKCAYR-ASYRDGKMI--ATPKPCAGKQGTIITVE 153 (694)
T ss_pred cchh-------HHHHhhhhcCccHHHH-hhhhheeEEEEEEeecCceeeeE-EEeeccccc--cCCCCccCCCceEEEeh
Confidence 4444 23334555554 33 4444457999999997654 332 244555433 22322345789999983
Q ss_pred ------------ecccccccccHHHHHHHHHHHcCCC
Q 004309 253 ------------LRDEAGEYLEESKLKELVKKYSEFI 277 (762)
Q Consensus 253 ------------Lk~~~~e~l~~~~l~~likkys~fi 277 (762)
|+..++|| .+|-.++.+|+-|-
T Consensus 154 dLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIHn 187 (694)
T KOG1979|consen 154 DLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIHN 187 (694)
T ss_pred HhhccCHHHHHHhcCcHHHH---HHHHHHHHHHheeC
Confidence 44555555 78899999998663
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.05 E-value=7.6e-06 Score=97.51 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=89.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHH-------HHHHHHHhc
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKNLGTIAK 174 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL-------~~~LgtIa~ 174 (762)
...++|||.||+|-... +.. -.|.|.++.+ ..|+|.|||.||+.+-- .+.+.++..
T Consensus 32 ~~vv~Elv~NaiDe~~a--------------g~a--~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ 94 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMA--------------GYC--DTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLH 94 (654)
T ss_pred HhhhHHhhhcccccccc--------------CCC--CEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeec
Confidence 34678999999994210 111 2566666654 46999999999998511 011222222
Q ss_pred ccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCc-eEEEeCCCCCCCCCCeEEEEEe
Q 004309 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLHL 253 (762)
Q Consensus 175 Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L~L 253 (762)
+|.+ |-. ......-|..|+|..|+-.++.+++|.|+..+.. |.....++.. -.+... +....+||+|+..-
T Consensus 95 ag~k-f~~----~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~-~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~p 166 (654)
T TIGR01059 95 AGGK-FDK----DSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI-YRQEFERGIPLGPLEVV--GETKKTGTTVRFWP 166 (654)
T ss_pred ccCc-cCC----CcceecCCccchhHHHHHHhcCeEEEEEEECCeE-EEEEEeCCCcccCceec--cCCCCCCcEEEEEE
Confidence 2221 210 1112357999999999999999999999975432 4333332211 111111 23457899999542
Q ss_pred ccccccc----ccHHHHHHHHHHHcCCCCcceEE
Q 004309 254 RDEAGEY----LEESKLKELVKKYSEFINFPIYI 283 (762)
Q Consensus 254 k~~~~e~----l~~~~l~~likkys~fi~~PI~l 283 (762)
.+ .-| .+...|.+.++.++ ++.--|.+
T Consensus 167 dp--~~F~~~~~e~~~i~~rl~~~A-~l~pgl~i 197 (654)
T TIGR01059 167 DP--EIFETTEFDFDILAKRLRELA-FLNSGVKI 197 (654)
T ss_pred Ch--HHhCCcccCHHHHHHHHHHhh-ccCCCeEE
Confidence 22 233 25678899999988 44333444
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.04 E-value=7.6e-06 Score=97.10 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=90.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHH-------HHHHHHhcc
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKS 175 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~LgtIa~S 175 (762)
..++|||.||+|.... +. --.|.|.++.+ +.|+|.|||.||+.+--. +.+.++..+
T Consensus 40 ~~v~ElvdNaiDe~~a--------------g~--a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lha 102 (638)
T PRK05644 40 HLVYEIVDNSIDEALA--------------GY--CDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHA 102 (638)
T ss_pred hhhHHhhhcccccccC--------------CC--CCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecc
Confidence 3567999999994310 11 13577777654 489999999999986211 112222222
Q ss_pred cchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCce-EEEeCCCCCCCCCCeEEEEEec
Q 004309 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-AISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 176 g~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f-~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
|.+ |-. ..-.-.-|..|+|..|+=.++.+++|.|+..+. +|.....++..- .+... +.....||+|+..
T Consensus 103 g~k-fd~----~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G~~~~~~~~~--~~~~~~GT~I~F~-- 172 (638)
T PRK05644 103 GGK-FGG----GGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERGVPVTPLEVI--GETDETGTTVTFK-- 172 (638)
T ss_pred cCc-cCC----CcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECCeEccCcccc--CCcCCCCcEEEEE--
Confidence 221 210 011124799999999999999999999987543 454433332110 11111 2234689999953
Q ss_pred ccccc----cccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 255 DEAGE----YLEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 255 ~~~~e----~l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
++..- -++...|...++.++-.. ..-|.++
T Consensus 173 Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 173 PDPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred ECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 33322 235678888898887432 2334443
No 25
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.00 E-value=6e-06 Score=95.94 Aligned_cols=160 Identities=22% Similarity=0.282 Sum_probs=96.8
Q ss_pred HHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC-CccEEEEEeCCCCCCHHHHHHHHH
Q 004309 92 IIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLG 170 (762)
Q Consensus 92 ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMt~eeL~~~Lg 170 (762)
|-+.+.-.+..+++||||.||.||.++ .|+|.++. +-..|.|.|||.|++..+..-.-.
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAGAT--------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~l 71 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAGAT--------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLAL 71 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccCCc--------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhh
Confidence 344445556679999999999999762 46666554 336799999999999988774111
Q ss_pred HHhcccchhHHHhhhccCCCCccccccccc----eeeeeeccEEEEEEeeC-CCeeeEEEEcCCCceEEEeCCCCCCCCC
Q 004309 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGF----YSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGR 245 (762)
Q Consensus 171 tIa~Sg~~~f~~~~~~~~~~~~IGqFGIGF----yS~FmVadkV~V~Sk~~-~~~~~~W~s~~~~~f~I~~~~~~~~~~~ 245 (762)
..-.|.-..| . ++..-|-.|| +|+...-..|.|.|++. ...+..|.-+..|... ...+ -..++
T Consensus 72 kh~TSKi~~f-------~--Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~--~ar~~ 139 (672)
T KOG1978|consen 72 KHTTSKIVSF-------A--DLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKP--VARGR 139 (672)
T ss_pred hhhhhcccch-------h--hhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eecc--ccCCC
Confidence 2222333333 1 2223333444 36665556777888885 4458888888777644 2211 34689
Q ss_pred CeEEEEE-----eccccccccc-----HHHHHHHHHHHcCC---CCcceEE
Q 004309 246 GTEIRLH-----LRDEAGEYLE-----ESKLKELVKKYSEF---INFPIYI 283 (762)
Q Consensus 246 GT~I~L~-----Lk~~~~e~l~-----~~~l~~likkys~f---i~~PI~l 283 (762)
||+|.+. |.--..+|-. -.++..++.-|+-+ |.|+.+-
T Consensus 140 GTTV~v~~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~n 190 (672)
T KOG1978|consen 140 GTTVMVRQLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALISTAIKFLVSN 190 (672)
T ss_pred CCEEEHhhhcccCCCchHHhhcchhhhhhhHHhhHHHHHhhcccceeeeee
Confidence 9999974 1111111111 14577778888754 4455443
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.95 E-value=2.2e-05 Score=94.32 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=92.7
Q ss_pred hhHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHH----------HHHHHHH
Q 004309 102 DIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE----------DLIKNLG 170 (762)
Q Consensus 102 ~ifLRELIqNA~D-A~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e----------eL~~~Lg 170 (762)
...++|||.||+| |++ +.. -.|+|.++.+ +.|+|+|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~a--~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GHC--DDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhccccccccc---------------CCC--CEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 3578899999999 321 111 2566766654 489999999999987 444 33
Q ss_pred HHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCc-eEEEeCCCCCCCCCCeEE
Q 004309 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEI 249 (762)
Q Consensus 171 tIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I 249 (762)
+. .+|.+ |-. ..-.-.-|..|+|..++=.++.+++|.|+..+.. |......+.. -.+... +....+||+|
T Consensus 99 ~l-hAggK-fd~----~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~-~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 VL-HAGGK-FDQ----NSYKVSGGLHGVGVSVVNALSEWLELTIRRDGKI-HEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred ee-cccCC-CCC----CcccccCCccCccceEeehccCeEEEEEEeCCeE-EEEEEecCccccCcccc--CCcCCCCcEE
Confidence 22 22222 211 1111246899999999999999999999875432 4333332211 012221 2235689999
Q ss_pred EEEecccc--cccccHHHHHHHHHHHcCCCC--cceEEee
Q 004309 250 RLHLRDEA--GEYLEESKLKELVKKYSEFIN--FPIYIWA 285 (762)
Q Consensus 250 ~L~Lk~~~--~e~l~~~~l~~likkys~fi~--~PI~l~~ 285 (762)
+......- ..-++...|...++.++ |++ .-|.++.
T Consensus 170 ~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~d 208 (756)
T PRK14939 170 RFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKD 208 (756)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEec
Confidence 99533211 11235677888888886 453 4455544
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.35 E-value=7.9e-05 Score=86.46 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=74.7
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhH
Q 004309 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (762)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f 180 (762)
-.-.++||+.|+.||.++ .|.|.++-..-.+.|.|||+||+++||.. ||+=-..++-.|
T Consensus 22 la~~VeElv~NSiDA~At--------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~ry~TSK~h~ 80 (1142)
T KOG1977|consen 22 LAQCVEELVLNSIDAEAT--------------------CVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGNRYFTSKCHS 80 (1142)
T ss_pred HHHHHHHHHhhccccCce--------------------EEEEEecCceeEEEEEecCCCccHHHHHH-HHhhhhhhhcee
Confidence 355899999999999752 45555666778899999999999999985 654322222112
Q ss_pred HHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeeeE--EEEcCCCceEEEeCCCCCCCCCCeEEEEE
Q 004309 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYV--WESKADGAFAISEDTWNEPLGRGTEIRLH 252 (762)
Q Consensus 181 ~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~~--W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (762)
...+ ......|--|=.++|.-=++.-+ |+|+.. ...+|. -...|..--.+..+ ..+...||+|+++
T Consensus 81 ~ndl---~~~~tyGfRGeALasIsd~s~l~-v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 81 VNDL---ENPRTYGFRGEALASISDMSSLV-VISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred cccc---ccccccccchhhhhhhhhhhhhh-hhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 2222 12345677777777766665444 555543 223332 11112212122222 2456789999985
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.33 E-value=0.00071 Score=57.90 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=56.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~---------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE---------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC---------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC-------
Confidence 4689999999999641 013355655555444568999999999999988655433111
Q ss_pred hhhccCCCCccccccccceeeeeecc----EEEEEE
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVAD----YVEVIS 214 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVad----kV~V~S 214 (762)
......+.+|+|++.+-.+++ .+.+.+
T Consensus 61 -----~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~ 91 (103)
T cd00075 61 -----SRSRKGGGTGLGLSIVKKLVELHGGRIEVES 91 (103)
T ss_pred -----CCCCCCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 111234678999998877776 555544
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.10 E-value=0.0006 Score=74.25 Aligned_cols=101 Identities=21% Similarity=0.357 Sum_probs=60.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..+..||+||..+. .....+.|.+..+.+.-.|+|.|||+||+.+++..-+.. .. +
T Consensus 250 ~il~nLi~NA~k~~----------------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-f~---~---- 305 (356)
T PRK10755 250 LLLRNLVENAHRYS----------------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKA-FV---R---- 305 (356)
T ss_pred HHHHHHHHHHHhhC----------------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCC-eE---e----
Confidence 35777888876552 112345666655555567999999999999998753321 11 0
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
. + ..-|.+|+|++-|-.+++. + +|.+.+...+ ...||+|++.+..
T Consensus 306 ----~-~-~~~~g~GlGL~i~~~i~~~------~------------gg~i~i~s~~----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 306 ----M-D-SRYGGIGLGLSIVSRITQL------H------------HGQFFLQNRQ----ERSGTRAWVWLPK 350 (356)
T ss_pred ----C-C-CCCCCcCHHHHHHHHHHHH------C------------CCEEEEEECC----CCCeEEEEEEecC
Confidence 0 0 1125689999876655442 1 2344554421 1269999998754
No 30
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.97 E-value=0.00098 Score=79.81 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+.+.+.+.+..-..++
T Consensus 583 vl~nLl~NAik~~~----------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~------- 639 (679)
T TIGR02916 583 VLGHLVQNALEATP----------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT------- 639 (679)
T ss_pred HHHHHHHHHHHhCC----------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC-------
Confidence 56788888887742 1234555555545555799999999999988555442211111
Q ss_pred hhccCCCCccccccccceeeeeec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
+ . +..|+|.+.|--++
T Consensus 640 -----~-~--~G~GLGL~i~~~iv 655 (679)
T TIGR02916 640 -----K-G--AGMGIGVYECRQYV 655 (679)
T ss_pred -----C-C--CCcchhHHHHHHHH
Confidence 1 1 56799998876553
No 31
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.91 E-value=0.0018 Score=72.16 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=48.3
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
...|..|+.||.++.... + .....+.|.+....+.-.|+|.|||+||+.+...+-|-... ++
T Consensus 389 ~~vl~Nl~~NAik~~~~~-------~-----~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~-~~----- 450 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIK-------G-----WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFF-TT----- 450 (494)
T ss_pred HHHHHHHHHHHHHHhhcc-------C-----CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCc-cc-----
Confidence 447899999999997520 0 01122334333444445699999999999988776443221 11
Q ss_pred HhhhccCCCCccccccccceeeeee
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmV 206 (762)
.....+.-|+|++-|-.+
T Consensus 451 -------~~~~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 451 -------KGGSRKHIGMGLSVAQEI 468 (494)
T ss_pred -------CCCCCCCCcccHHHHHHH
Confidence 111145678999766554
No 32
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.87 E-value=0.0016 Score=73.11 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=38.2
Q ss_pred ccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeecc
Q 004309 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD 208 (762)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVad 208 (762)
.+.|.+..+.+.-.|+|.|||+||+.+++...+...-+.. .......|..|+|++-|-.+++
T Consensus 373 ~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~----------~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 373 SLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE----------GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred EEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC----------CCcCCCCCCCcHHHHHHHHHHH
Confidence 3455555555555689999999999998876443222110 1112245678999986655543
No 33
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.86 E-value=0.0021 Score=55.84 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=53.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..++||+.||.++.. ....+.|.+..+.....+.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~----------------~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~----- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTP----------------EGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D----- 65 (111)
T ss_pred HHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-----
Confidence 356788888887753 123456777666656679999999999998887655332211 1
Q ss_pred hhhccCCCCccccccccceeeeeeccEE
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV 210 (762)
......+++|+|++.|-.++.+.
T Consensus 66 -----~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 -----GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred -----CCCCCCCcccccHHHHHHHHHHc
Confidence 01234577899999887776554
No 34
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.81 E-value=0.002 Score=71.63 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=50.4
Q ss_pred ccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEee
Q 004309 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH 216 (762)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~ 216 (762)
.+.|++..+.+.-.|+|.|||.||+.+.+.+.+-..-++... ....-+..|+|++-+--++++ +
T Consensus 374 ~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~----------~~~~~~g~GlGL~i~~~~~~~------~ 437 (457)
T TIGR01386 374 TITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA----------RSNSGEGTGLGLAIVRSIMEA------H 437 (457)
T ss_pred eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc----------cCCCCCCccccHHHHHHHHHH------C
Confidence 455555555444579999999999999888655432222110 112235689999876554332 1
Q ss_pred CCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEe
Q 004309 217 NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHL 253 (762)
Q Consensus 217 ~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~L 253 (762)
+|.+++.. + +.||+|+|.+
T Consensus 438 ------------~G~~~~~~-~-----~~G~~~~~~~ 456 (457)
T TIGR01386 438 ------------GGRASAES-P-----DGKTRFILRF 456 (457)
T ss_pred ------------CCEEEEEe-C-----CCceEEEEec
Confidence 23555554 2 4699988875
No 35
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.81 E-value=0.003 Score=70.56 Aligned_cols=101 Identities=24% Similarity=0.237 Sum_probs=59.9
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.+.+||.||..+. .....+.|.+..+.+.-.|+|.|||.||+.+++...+ ....+...
T Consensus 372 vl~nli~Na~~~~----------------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~-~~~~~~~~----- 429 (475)
T PRK11100 372 ALGNLLDNAIDFS----------------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIF-ERFYSLPR----- 429 (475)
T ss_pred HHHHHHHHHHHhC----------------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH-HHHccCCC-----
Confidence 4667777777652 1123455665555555679999999999999888644 32222110
Q ss_pred hhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
.+ ..-+..|+|++.|-.++... +|.+.+... .+.||+|++.+.
T Consensus 430 ----~~-~~~~~~GlGL~i~~~~~~~~------------------~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 430 ----PA-NGRKSTGLGLAFVREVARLH------------------GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred ----CC-CCCCCcchhHHHHHHHHHHC------------------CCEEEEEEc-----CCCeEEEEEEee
Confidence 01 11245689998776553221 234555442 246999998875
No 36
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.79 E-value=0.003 Score=72.21 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=61.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..+.+|+.||.+|... .....+.|++..+.+.-.|+|.|||.||+.+++...|.. +.|++
T Consensus 436 ~vl~nLl~NAi~~~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~-~~~~~----- 495 (542)
T PRK11086 436 TILGNLIENALEAVGG--------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK-GYSTK----- 495 (542)
T ss_pred HHHHHHHHHHHHHhhc--------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC-CCccC-----
Confidence 3577999999999641 112334555555544456899999999999988865522 11111
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
-+..|+|++-+-.+++. + +|.+.+... .+.||++++.|.-
T Consensus 496 ----------~~g~GlGL~iv~~iv~~------~------------~G~i~v~s~-----~~~G~~f~i~lP~ 535 (542)
T PRK11086 496 ----------GSNRGVGLYLVKQSVEN------L------------GGSIAVESE-----PGVGTQFFVQIPW 535 (542)
T ss_pred ----------CCCCcCcHHHHHHHHHH------c------------CCEEEEEeC-----CCCcEEEEEEEeC
Confidence 13459999776555331 2 133444432 2568888888764
No 37
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.75 E-value=0.0022 Score=72.11 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=60.5
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
...+..||+||..+.. ....+.|.+..+.+.-.|+|.|||+||+.+++.+.+-..-+. .
T Consensus 319 ~~vl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-~---- 377 (430)
T PRK11006 319 RSAISNLVYNAVNHTP----------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRV-D---- 377 (430)
T ss_pred HHHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccc-c----
Confidence 3456788888887742 112344555455455579999999999999987643211110 0
Q ss_pred HhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
.....-.|..|+|++-|-.++.. + +|.+.+... .+.||++++.+.
T Consensus 378 -----~~~~~~~~G~GLGL~ivk~iv~~------~------------gG~i~i~s~-----~~~Gt~f~i~lP 422 (430)
T PRK11006 378 -----KARSRQTGGSGLGLAIVKHALSH------H------------DSRLEIESE-----VGKGTRFSFVLP 422 (430)
T ss_pred -----CCCCCCCCCCchHHHHHHHHHHH------C------------CCEEEEEec-----CCCceEEEEEec
Confidence 00112236679999876555321 1 234444432 246888888875
No 38
>PRK10604 sensor protein RstB; Provisional
Probab=96.72 E-value=0.0018 Score=73.20 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=59.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.+..||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+-+....+..
T Consensus 323 vl~NLl~NAik~~------------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~------- 377 (433)
T PRK10604 323 VLDNLLNNALRYA------------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD------- 377 (433)
T ss_pred HHHHHHHHHHHhC------------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC-------
Confidence 4677777776542 123566666666666799999999999998886443222110
Q ss_pred hhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
.+....-|.+|+|++-+-.+++. + +|.+++... ...||++++.+.
T Consensus 378 ---~~~~~~~~g~GLGL~ivk~i~~~------~------------gG~i~v~s~-----~~~G~~f~i~lP 422 (433)
T PRK10604 378 ---PSRDRATGGCGLGLAIVHSIALA------M------------GGSVNCDES-----ELGGARFSFSWP 422 (433)
T ss_pred ---CCCCCCCCCccchHHHHHHHHHH------C------------CCEEEEEec-----CCCeeEEEEEEe
Confidence 01112246789999755444331 1 234455432 246888888865
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.55 E-value=0.0037 Score=69.87 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=59.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.+++||+||..+. ...+.|++..+.+.-.|+|.|||+||+.+++...+...-+ +.
T Consensus 357 ~l~nli~NA~~~~------------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~-~~------ 411 (461)
T PRK09470 357 ALENIVRNALRYS------------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYR-VD------ 411 (461)
T ss_pred HHHHHHHHHHHhC------------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCcc-CC------
Confidence 4778888877552 1235677766666667999999999999988764422111 10
Q ss_pred hhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
......-+.+|+|++-+=.++.. + +|.+.+... ...||+|++.+.
T Consensus 412 ---~~~~~~~~g~GlGL~iv~~~v~~------~------------~G~l~~~s~-----~~~Gt~~~i~lp 456 (461)
T PRK09470 412 ---EARDRESGGTGLGLAIVENAIQQ------H------------RGWVKAEDS-----PLGGLRLTIWLP 456 (461)
T ss_pred ---cccCCCCCCcchhHHHHHHHHHH------C------------CCEEEEEEC-----CCCeEEEEEEee
Confidence 01112346789999754333221 1 234444432 245999998864
No 40
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.54 E-value=0.0038 Score=76.56 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=57.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.|..||+||..+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+-+.. |..
T Consensus 517 il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~- 570 (921)
T PRK15347 517 ILVNLLGNAVKFTE-----------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTP--------FYQ- 570 (921)
T ss_pred HHHHHHHHHhhcCC-----------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcC--------ccc-
Confidence 56677778776631 1235555555555557999999999999998764421 211
Q ss_pred hhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
. + .-.|..|+|++-|-.+++.. +|.+++.. ..+.||++++.+.
T Consensus 571 ---~-~-~~~~g~GLGL~i~~~~~~~~------------------gG~i~i~s-----~~~~Gt~f~i~lp 613 (921)
T PRK15347 571 ---A-D-THSQGTGLGLTIASSLAKMM------------------GGELTLFS-----TPGVGSCFSLVLP 613 (921)
T ss_pred ---C-C-CCCCCCchHHHHHHHHHHHc------------------CCEEEEEe-----cCCCceEEEEEEE
Confidence 0 1 12366899997554432211 12344433 2356898888875
No 41
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.51 E-value=0.0086 Score=71.49 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=88.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHH-------HHHHHHhccc
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSG 176 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~LgtIa~Sg 176 (762)
.+.|+|.||+|=.-. +.. -.|.|.++. ++.|+|.|||-||+.+--. +.+.|...+|
T Consensus 38 lv~EIvdNavDE~~a--------------g~~--~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaG 100 (637)
T TIGR01058 38 LVWEIVDNSVDEVLA--------------GYA--DNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAG 100 (637)
T ss_pred ehhhhhcchhhhhhc--------------CCC--cEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEeccc
Confidence 456999999995310 112 357777764 4689999999999863211 1111111222
Q ss_pred chhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCe-eeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 177 TSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 177 ~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
.+ |- ...-.-.-|..|||.-.+=.++++++|.++..+.. ...|+..+...-.+... +....+||+|+.....
T Consensus 101 gk-fd----~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~~~~~l~~~--~~~~~~GT~V~F~PD~ 173 (637)
T TIGR01058 101 GK-FD----QGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKI--GTTKKTGTLVHFHPDP 173 (637)
T ss_pred Cc-CC----CCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCcCcCCcccc--cCCCCCceEEEEEeCH
Confidence 11 10 00111235999999999999999999999865422 22454322111111111 2234689999887554
Q ss_pred cc---cccccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 256 EA---GEYLEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 256 ~~---~e~l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
.- .. ++.+.|+.-++..+-.. ..-|.++
T Consensus 174 ~iF~~~~-f~~d~l~~RlrelA~Ln~GL~I~l~ 205 (637)
T TIGR01058 174 TIFKTTQ-FNSNIIKERLKESAFLLKKLKLTFT 205 (637)
T ss_pred HHcCCCc-cCHHHHHHHHHHHhccCCCcEEEEE
Confidence 32 12 35667777777776333 3555554
No 42
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.47 E-value=0.0054 Score=75.43 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=49.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.|..||+||+.+.. ...+.|.+..+...-.|.|.|||+||+.+++...|.. |..
T Consensus 565 il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~- 618 (914)
T PRK11466 565 VITNLLSNALRFTD-----------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQP--------FVQ- 618 (914)
T ss_pred HHHHHHHHHHHhCC-----------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhch--------hhc-
Confidence 56777888776631 1234555555545557999999999999998765422 211
Q ss_pred hhccCCCCccccccccceeeeeec----cEEEEEEe
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISK 215 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVa----dkV~V~Sk 215 (762)
. ....|..|+|++-|--++ -++.|.|.
T Consensus 619 ---~--~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~ 649 (914)
T PRK11466 619 ---V--SGKRGGTGLGLTISSRLAQAMGGELSATST 649 (914)
T ss_pred ---C--CCCCCCCcccHHHHHHHHHHcCCEEEEEec
Confidence 0 112367899998665443 34555444
No 43
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.46 E-value=0.0039 Score=65.72 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.|.+||.||..+.. ....+.|.+....+.-.|+|.|||.||+.+.+...+....+. ..
T Consensus 233 vl~nll~Nai~~~~----------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~-~~----- 290 (333)
T TIGR02966 233 AFSNLVSNAIKYTP----------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRV-DK----- 290 (333)
T ss_pred HHHHHHHHhheeCC----------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceec-Cc-----
Confidence 67888888876631 112344444444444569999999999999887544221110 00
Q ss_pred hhccCCCCccccccccceeeeeec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
......+..|+|++.|-.++
T Consensus 291 ----~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 291 ----SRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred ----ccccCCCCCcccHHHHHHHH
Confidence 00112245689998766554
No 44
>PRK10364 sensor protein ZraS; Provisional
Probab=96.42 E-value=0.006 Score=69.04 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=36.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L 169 (762)
.+..||.||.+|.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.+
T Consensus 352 il~NLl~NA~k~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 352 VLLNLYLNAIQAIG----------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHhcC----------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 46778889998853 123455666555555679999999999999887544
No 45
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.40 E-value=0.005 Score=71.06 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=49.8
Q ss_pred cEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC
Q 004309 138 LEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN 217 (762)
Q Consensus 138 ~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~ 217 (762)
+.|.+..+.+.-.|+|.|||.||+.+++..-+.. +.+ . + ..-+..|+|++-|--+++. +
T Consensus 398 i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~----f~~--------~-~-~~~~G~GLGL~Ivk~iv~~------~- 456 (485)
T PRK10815 398 VEISARQTDEHLHIVVEDDGPGIPESKRELIFDR----GQR--------A-D-TLRPGQGLGLSVAREITEQ------Y- 456 (485)
T ss_pred EEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCC----ccc--------C-C-CCCCCcchhHHHHHHHHHH------c-
Confidence 4566555555557999999999999998754321 110 0 0 1123579999876555431 2
Q ss_pred CCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEeccc
Q 004309 218 DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDE 256 (762)
Q Consensus 218 ~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~~ 256 (762)
+|.+.+... .+.||++++.++..
T Consensus 457 -----------gG~i~v~s~-----~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 457 -----------EGKISAGDS-----PLGGARMEVIFGRQ 479 (485)
T ss_pred -----------CCEEEEEEC-----CCCEEEEEEEEcCC
Confidence 234555442 24699999988753
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.35 E-value=0.0052 Score=70.89 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=61.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.+.+||+||.+|+.+. + .....+.|.+..+.+.-.|.|.|||.||+.++...-|.. +.+++
T Consensus 436 vl~nLl~NAi~~~~~~-------~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------ 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR------ 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------
Confidence 5789999999997520 0 111223444443333456899999999999988764422 22211
Q ss_pred hhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
... -|..|+|++-+.-+++. + +|.+++... .+.||++++.|..
T Consensus 497 -----~~~-~~g~GlGL~ivk~iv~~------~------------~G~i~v~s~-----~~~Gt~f~i~lP~ 539 (545)
T PRK15053 497 -----ADE-PGEHGIGLYLIASYVTR------C------------GGVITLEDN-----DPCGTLFSIFIPK 539 (545)
T ss_pred -----CCC-CCCceeCHHHHHHHHHH------c------------CCEEEEEEC-----CCCeEEEEEEECC
Confidence 111 24569999887665432 1 233444332 2578988888764
No 47
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.32 E-value=0.0085 Score=73.99 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=53.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc-cEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
.|..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++..-|....+.
T Consensus 583 il~nLi~NAik~~~-----------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~------- 638 (968)
T TIGR02956 583 VLINLVGNAIKFTD-----------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA------- 638 (968)
T ss_pred HHHHHHHHHHhhCC-----------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc-------
Confidence 67888888887631 23456666666666 679999999999999987655322111
Q ss_pred hhhccCCCCccccccccceeeeeec----cEEEEEEe
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISK 215 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVa----dkV~V~Sk 215 (762)
.....-|..|+|++-|-.++ -++.|.|.
T Consensus 639 -----~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~ 670 (968)
T TIGR02956 639 -----DGRRRSGGTGLGLAISQRLVEAMDGELGVESE 670 (968)
T ss_pred -----CCCCCCCCccHHHHHHHHHHHHcCCEEEEEec
Confidence 11122367899998654443 34555544
No 48
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.28 E-value=0.0068 Score=69.25 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=33.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc-cEEEEEeCCCCCCHHHHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~L 169 (762)
.+.+||.||+.+.. ....+.|.+..+.+. -.|.|+|||+||+.+.+...+
T Consensus 504 ~~~nli~na~~~~~----------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAIS----------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhc----------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 46677778776642 112345555444444 679999999999999887533
No 49
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.23 E-value=0.0088 Score=66.64 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=45.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC-ccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
-.|..||.||+.+.. ....+.|.+....+ .-.|+|.|||+||+.+++...|...- +.
T Consensus 275 qvl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~-~~----- 332 (380)
T PRK09303 275 QVLLNLLDNAIKYTP----------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRV-RL----- 332 (380)
T ss_pred HHHHHHHHHHHhcCC----------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCce-eC-----
Confidence 457778888877632 11223343333223 24689999999999998875442111 00
Q ss_pred HhhhccCCCCccccccccceeeeeec
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
....-.+..|+|++-|..++
T Consensus 333 ------~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 333 ------PRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred ------CCCCCCCcccccHHHHHHHH
Confidence 01112356899998776664
No 50
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.08 E-value=0.023 Score=72.44 Aligned_cols=160 Identities=16% Similarity=0.243 Sum_probs=94.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHH-------HH-HHHHhc
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KN-LGTIAK 174 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~-LgtIa~ 174 (762)
-.+.|.|.||+|-.. | ++ ..-.|.|.++.+++.|+|.|||-||+-+--. +. |++.-.
T Consensus 80 kifdEIldNAvDe~~--r-----~g--------~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhA 144 (1465)
T PLN03237 80 KIFDEILVNAADNKQ--R-----DP--------KMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLT 144 (1465)
T ss_pred hhHHHHhhhhHhHHh--h-----cC--------CCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeec
Confidence 467799999999742 2 12 1246888888778899999999999864211 11 222222
Q ss_pred ccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeee--EEEEc-CCC-ceEEEeCCCCCCCCCCeEE
Q 004309 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESK-ADG-AFAISEDTWNEPLGRGTEI 249 (762)
Q Consensus 175 Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~--~W~s~-~~~-~f~I~~~~~~~~~~~GT~I 249 (762)
||+ |-. ....-.-|..|||.-.+=.++.+++|.++.. ....| .|..+ |.. .-.+.. .....+||+|
T Consensus 145 Ggk--Fdd----~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT~V 215 (1465)
T PLN03237 145 SSN--YDD----NEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWTKV 215 (1465)
T ss_pred ccc--CCC----CcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCceEE
Confidence 332 210 1112246999999999999999999999733 12334 56532 211 111222 1123689999
Q ss_pred EEEecccc---cccccHHHHHHHHHHH---cCCCC--cceEEeeee
Q 004309 250 RLHLRDEA---GEYLEESKLKELVKKY---SEFIN--FPIYIWASK 287 (762)
Q Consensus 250 ~L~Lk~~~---~e~l~~~~l~~likky---s~fi~--~PI~l~~~~ 287 (762)
+..-...- .. ++.+.|..+.++. +.|++ .-|++++.+
T Consensus 216 tF~PD~eiF~~~~-fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 216 TFKPDLAKFNMTH-LEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EEEECHHHhCCce-EcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 87633221 22 3566665554444 44673 778887643
No 51
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.03 E-value=0.017 Score=69.97 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=53.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEe-CCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
-.|..||+||.++.. ...+.|.+..+ .+.-.|+|.|||+||+.+++..-|-...+. +
T Consensus 401 qvl~NLl~NAik~~~-----------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~---- 458 (779)
T PRK11091 401 QILWNLISNAVKFTQ-----------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-K---- 458 (779)
T ss_pred HHHHHHHHHHHHhCC-----------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc-c----
Confidence 356789999887731 12356666655 333568999999999999987655332211 0
Q ss_pred HhhhccCCCCccccccccceeeeeec----cEEEEEEee
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISKH 216 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVa----dkV~V~Sk~ 216 (762)
........|.-|+|++-|-.++ -++.|.|..
T Consensus 459 ----~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 459 ----DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred ----CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 0112233567799987665443 456666554
No 52
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.99 E-value=0.035 Score=70.06 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=90.9
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHH-------H-HHHHHhcc
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------K-NLGTIAKS 175 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~-~LgtIa~S 175 (762)
.+.|.|.||+|-.. | ++ .--.|.|.++.+++.|+|.|||-||+-+--. + .|++.-.|
T Consensus 56 i~dEIldNAvDe~~--~-----~g--------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG 120 (1135)
T PLN03128 56 IFDEILVNAADNKQ--R-----DP--------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS 120 (1135)
T ss_pred HHHHHHHHHHHHhh--h-----cC--------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc
Confidence 56799999999742 2 11 1237888888877899999999999864211 1 12222223
Q ss_pred cchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeee--EEEEcC-CCce-EEEeCCCCCCCCCCeEEE
Q 004309 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKA-DGAF-AISEDTWNEPLGRGTEIR 250 (762)
Q Consensus 176 g~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~--~W~s~~-~~~f-~I~~~~~~~~~~~GT~I~ 250 (762)
|+ |-. ..-.-.-|..|||.-.+=.++.+++|.+... ++..| .|...- ...- .|.. .....+||+|+
T Consensus 121 gk--Fdd----~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~---~~~~~~GT~It 191 (1135)
T PLN03128 121 SN--FDD----NEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITS---CKASENWTKIT 191 (1135)
T ss_pred cc--cCC----ccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceecc---CCCCCCceEEE
Confidence 32 211 1112246999999999999999999999843 22333 453211 0011 1211 11235899998
Q ss_pred EEecccc---cccccHHHHHHHHHH---HcCCCC--cceEEeeee
Q 004309 251 LHLRDEA---GEYLEESKLKELVKK---YSEFIN--FPIYIWASK 287 (762)
Q Consensus 251 L~Lk~~~---~e~l~~~~l~~likk---ys~fi~--~PI~l~~~~ 287 (762)
-.-...- .. ++.+.+..+.++ .+.|++ .-|+++..+
T Consensus 192 F~PD~~iF~~~~-fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 192 FKPDLAKFNMTR-LDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred EEECHHHcCCCc-cChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 8744321 22 244444333333 455763 677776543
No 53
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.90 E-value=0.011 Score=70.32 Aligned_cols=155 Identities=13% Similarity=0.127 Sum_probs=85.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH--H--H------HHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--N--L------GTIA 173 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--~--L------gtIa 173 (762)
.+.|+|.||+|-.- | ++. ..--.|.|.++ ++.++|.|||-||+-+--.+ . . .++.
T Consensus 49 i~~EIldNavDe~~--~-----~~~------g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~L 113 (602)
T PHA02569 49 IIDEIIDNSVDEAI--R-----TNF------KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRT 113 (602)
T ss_pred eeehhhhhhhhhhh--c-----cCC------CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEee
Confidence 55699999999632 1 221 12236777777 57899999999998643211 1 0 1222
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeee--EEEEcCCCceEEEeCCCCCCCCCCeEEEE
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQY--VWESKADGAFAISEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~--~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (762)
.+|.+ | . +.-.-.-|..|||.-.+=.++.+++|.++. +...| .|.. |- ...+.+.+....+||+|+.
T Consensus 114 haGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~-~~~~~~q~f~~-G~---~~~~~~~~~~~~~GT~V~F 182 (602)
T PHA02569 114 KAGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCD-GKNEVTVNCSN-GA---ENISWSTKPGKGKGTSVTF 182 (602)
T ss_pred ccccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEc-CCEEEEEEecC-Cc---ccCCcccCCCCCCccEEEE
Confidence 22321 3 1 111123699999998888999999998854 33323 3432 21 1111111233468999988
Q ss_pred Eecccc---cccc--cHHHHHHHHHHHcCCCC--cceEEee
Q 004309 252 HLRDEA---GEYL--EESKLKELVKKYSEFIN--FPIYIWA 285 (762)
Q Consensus 252 ~Lk~~~---~e~l--~~~~l~~likkys~fi~--~PI~l~~ 285 (762)
.....- ..|- ..+.|..-++..+ |++ .-|+++.
T Consensus 183 ~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~d 222 (602)
T PHA02569 183 IPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNG 222 (602)
T ss_pred EECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEe
Confidence 755322 1121 1244555455443 443 5566654
No 54
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.046 Score=64.24 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=94.6
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH-------HHHHHh
Q 004309 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIA 173 (762)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~-------~LgtIa 173 (762)
....+.|.|.||+|=.-. + .--.|.|+++ .++.|+|.|||-||+-+-=.. .+.|+-
T Consensus 37 LhHlv~EVvDNsiDEala--------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~L 99 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA--------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVL 99 (635)
T ss_pred ceeeEeEeeechHhHHhh--------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEee
Confidence 355678999999996321 2 2236777776 568999999999998754111 111222
Q ss_pred cccchhHHHhhhccCCC-CccccccccceeeeeeccEEEEEEeeCCCe-eeEEEEcCCCceEEEeCCCCCCCCCCeEEEE
Q 004309 174 KSGTSAFVEKMQTSGDL-NLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~-~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (762)
..|.+ |-+ ... -.=|-.|||.--|=.++++++|.++.++.. .-.|+- |...-.+...........||+|+.
T Consensus 100 HAGGK-Fd~-----~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~-G~~~~~l~~ig~~~~~~~GT~V~F 172 (635)
T COG0187 100 HAGGK-FDN-----DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFER-GVPVTPLEVIGSTDTKKTGTKVRF 172 (635)
T ss_pred ccCcc-cCC-----CccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeC-CCcCCCceecccCCCCCCccEEEE
Confidence 22221 210 111 124889999988899999999999886422 113322 221112222111234567999988
Q ss_pred Eecccc---cccccHHHHHHHHHHHcCCCC-cceEEeee
Q 004309 252 HLRDEA---GEYLEESKLKELVKKYSEFIN-FPIYIWAS 286 (762)
Q Consensus 252 ~Lk~~~---~e~l~~~~l~~likkys~fi~-~PI~l~~~ 286 (762)
+-.+.- .+| +...|+.-++.++=..+ .-|.+...
T Consensus 173 ~PD~~iF~~~~f-~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 173 KPDPEIFGETEF-DYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred EcChHhcCCccc-CHHHHHHHHHHHhccCCCCEEEEEec
Confidence 754332 233 66788888887764443 66777543
No 55
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.67 E-value=0.014 Score=65.05 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=47.7
Q ss_pred ccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEee
Q 004309 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH 216 (762)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~ 216 (762)
.+.|.+..+.+.-.|+|.|||.||+.+++...+....+ +. .... -+.+|+|++-|-.+++. +
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~-~~----------~~~~-~~g~GlGL~iv~~i~~~------~ 411 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTR-GD----------SARG-SSGTGLGLAIVKRIVDQ------H 411 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCccc-CC----------CCCC-CCCeehhHHHHHHHHHH------C
Confidence 34555555544456999999999999988764432111 10 0111 25688998765444331 1
Q ss_pred CCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 217 NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 217 ~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
+|.+++... ...||+|++.+.
T Consensus 412 ------------~g~l~i~~~-----~~~G~~~~i~lp 432 (435)
T PRK09467 412 ------------NGKVELGNS-----EEGGLSARAWLP 432 (435)
T ss_pred ------------CCEEEEEEC-----CCCcEEEEEEEe
Confidence 134444432 256888888764
No 56
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.54 E-value=0.027 Score=69.10 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=49.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC--Cc---cEEEEEeCCCCCCHHHHHHHHHHHhcccch
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EK---KILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~--~~---~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~ 178 (762)
.|..||+||..+.. ...+.|++.... ++ -.|+|.|||+||+.+++.+-+-...+..
T Consensus 412 vl~NLl~NAik~~~-----------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE-----------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD-- 472 (919)
T ss_pred HHHHHHHHHhhcCC-----------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC--
Confidence 56788888877632 123445554322 21 3489999999999999876443221110
Q ss_pred hHHHhhhccCCCCccccccccceeeeeec----cEEEEEEee
Q 004309 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISKH 216 (762)
Q Consensus 179 ~f~~~~~~~~~~~~IGqFGIGFyS~FmVa----dkV~V~Sk~ 216 (762)
.......|..|+|++-|-.++ -++.|.|..
T Consensus 473 --------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 --------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred --------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 011123477899998665544 345555443
No 57
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.52 E-value=0.023 Score=68.70 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=47.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.+..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+... .+++.
T Consensus 601 il~NLI~NAik~s~----------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F-~t~~~----- 658 (703)
T TIGR03785 601 MLDKLVDNAREFSP----------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM-VSVRD----- 658 (703)
T ss_pred HHHHHHHHHHHHCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC-eecCC-----
Confidence 46677778777642 122355555555555569999999999999887644221 11110
Q ss_pred hhccCCCCccccccccceeeeeecc
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVAD 208 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVad 208 (762)
....--+..|+|++-|-.+++
T Consensus 659 ----~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 ----QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ----CCCCCCCCccHHHHHHHHHHH
Confidence 011112468999988766544
No 58
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.40 E-value=0.063 Score=68.74 Aligned_cols=163 Identities=17% Similarity=0.248 Sum_probs=92.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHHhc
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAK 174 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~LgtIa~ 174 (762)
-.+.|.|.||+|-.. | ++ ....--.|.|.++.+.+.|+|.|||-||+-+--.+ .|++.-.
T Consensus 60 ki~dEIldNAvDe~~--r-----~~-----~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~a 127 (1388)
T PTZ00108 60 KIFDEILVNAADNKA--R-----DK-----GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLT 127 (1388)
T ss_pred hhHHHHhhhhhhhhc--c-----cC-----CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeec
Confidence 356799999999743 2 10 01123478888888878999999999998642111 1333333
Q ss_pred ccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCC-Ceee--EEEEcC-C-CceEEEeCCCCCCCCCCeEE
Q 004309 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQY--VWESKA-D-GAFAISEDTWNEPLGRGTEI 249 (762)
Q Consensus 175 Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~-~~~~--~W~s~~-~-~~f~I~~~~~~~~~~~GT~I 249 (762)
||+ |- .....-.-|..|||.-.+=.++.+++|.+.... +..| .|.... . ..-.|... ....+||+|
T Consensus 128 Ggk--fd----d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~---~~~~~GT~V 198 (1388)
T PTZ00108 128 SSN--YD----DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSY---DGKKDYTKV 198 (1388)
T ss_pred ccc--CC----CCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCC---CCCCCceEE
Confidence 332 21 011122469999999999999999999998751 2323 565321 1 11122211 111589999
Q ss_pred EEEeccccc--ccccHHH---HHHHHHHHcCCC-CcceEEeee
Q 004309 250 RLHLRDEAG--EYLEESK---LKELVKKYSEFI-NFPIYIWAS 286 (762)
Q Consensus 250 ~L~Lk~~~~--e~l~~~~---l~~likkys~fi-~~PI~l~~~ 286 (762)
+..-...-. .-++.+. |+.-++..+-.. ..-|++++.
T Consensus 199 tF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 199 TFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 887443211 1124454 444444444333 366777654
No 59
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.40 E-value=0.032 Score=69.63 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=47.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
-.|.-||+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+++.+-+....+.+.
T Consensus 565 qvl~NLl~NAik~t~-----------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~----- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD-----------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT----- 622 (924)
T ss_pred HHHHHHHHHHHhhCC-----------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-----
Confidence 357778888877631 1234566655554456899999999999998764422111100
Q ss_pred hhhccCCCCccccccccceeeeeec
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
......+..|+|++-|-.++
T Consensus 623 -----~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 623 -----GVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred -----CCCCCCCCeehhHHHHHHHH
Confidence 11122356799998765553
No 60
>PRK10490 sensor protein KdpD; Provisional
Probab=95.38 E-value=0.023 Score=70.52 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=46.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++..-|.. ..++.
T Consensus 781 qVL~NLL~NAik~s~----------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFep-F~~~~----- 838 (895)
T PRK10490 781 RVLINLLENAVKYAG----------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDK-FARGN----- 838 (895)
T ss_pred HHHHHHHHHHHHhCC----------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCC-CccCC-----
Confidence 356788888877631 12334555555555557999999999999987754422 11111
Q ss_pred hhhccCCCCccccccccceeeeee
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLV 206 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmV 206 (762)
.....+..|+|++-|-.+
T Consensus 839 ------~~~~~~G~GLGL~Ivk~i 856 (895)
T PRK10490 839 ------KESAIPGVGLGLAICRAI 856 (895)
T ss_pred ------CCCCCCCccHHHHHHHHH
Confidence 111234578998776554
No 61
>PRK10337 sensor protein QseC; Provisional
Probab=95.36 E-value=0.027 Score=63.22 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.++.||.||..+.. .. ..|.|.... ..|+|.|||.||+.+++...+-..-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~--~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~-------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QG--SVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP-------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CC--CeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC--------
Confidence 56777777766631 11 235554432 379999999999999988644322111
Q ss_pred hhccCCCCccccccccceeeeeec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
+..-.+..|+|+.-|-.++
T Consensus 408 -----~~~~~~g~GlGL~iv~~i~ 426 (449)
T PRK10337 408 -----PGQEATGSGLGLSIVRRIA 426 (449)
T ss_pred -----CCCCCCccchHHHHHHHHH
Confidence 0111255899987665543
No 62
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.28 E-value=0.039 Score=68.57 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC---ccEEEEEeCCCCCCHHHHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE---KKILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMt~eeL~~~L 169 (762)
.|.-||+||..+.. ...+.|.+..... .-.|+|.|||+||+.+++.+-+
T Consensus 569 VL~NLL~NAik~t~-----------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IF 620 (894)
T PRK10618 569 ILLLLLNYAITTTA-----------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLH 620 (894)
T ss_pred HHHHHHHHHHHhCC-----------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhc
Confidence 56778888877632 1234444443322 2358999999999999988644
No 63
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.19 E-value=0.028 Score=65.86 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=28.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 163 (762)
.++|+|+||..+. ....+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha-----------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA-----------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC-----------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4677777765542 112355666555455579999999999864
No 64
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=94.93 E-value=0.12 Score=63.52 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=51.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEe---------------CCccEEEEEeCCCCCCHHHHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---------------KEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d---------------~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
..+..||+||..+.. ....+.|.+... .+.-.|.|.|||+||+.+++..
T Consensus 563 qvl~NLl~NAik~~~----------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~ 626 (828)
T PRK13837 563 QVLMNLCSNAAQAMD----------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPH 626 (828)
T ss_pred HHHHHHHHHHHHHcc----------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 357788889888853 123345555544 2223589999999999998875
Q ss_pred HHHHHhcccchhHHHhhhccCCCCccccccccceeeeeec----cEEEEEEeeC
Q 004309 168 NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISKHN 217 (762)
Q Consensus 168 ~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVa----dkV~V~Sk~~ 217 (762)
.|. . |. + .. . |..|+|++-|-.++ -++.|.|...
T Consensus 627 iFe----~----F~---~--~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 627 IFE----P----FF---T--TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred hhC----C----cc---c--CC-C--CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 331 1 11 0 11 1 67899998765543 5677777643
No 65
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.0015 Score=75.63 Aligned_cols=213 Identities=10% Similarity=-0.036 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHH
Q 004309 512 KKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLE 591 (762)
Q Consensus 512 ~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE 591 (762)
+...+..+|+.|..++..++-+.--......... ....-.-....|.+++ .+.+.+-..++....+.-.+.......
T Consensus 375 e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~ 451 (656)
T KOG0019|consen 375 DLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQL 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhh
Confidence 4558999999999999999888876665555554 3322222335677788 566778889999999988889888999
Q ss_pred HHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc--ch---HHHHHHHHHHHHHHHhhcccCCceeEE
Q 004309 592 RLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD---KELKESFKELTKWWKGALASENVDDVK 666 (762)
Q Consensus 592 ~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~---~~~~~~~~~L~~~~k~~L~~~~V~~V~ 666 (762)
+..+-++|++..-++...||.+.+.||....++......+...+.| +. ++.+.+.....+-++ .|-..
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe-~lck~------ 524 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFE-ELCKW------ 524 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHH-HHHHH------
Confidence 9999999999999999999999999999999998888776543333 11 233333333322222 23233
Q ss_pred EeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeEEECCCChhHHHHHHhhcCCchhhh
Q 004309 667 VSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEVEF 737 (762)
Q Consensus 667 vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~ 737 (762)
+..+|.+ +|+-|+..+.|+.++..|+..+....+++...|.++.+.+.||-|-+.- .+-.+-||+.+.
T Consensus 525 mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpi 592 (656)
T KOG0019|consen 525 MKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPL 592 (656)
T ss_pred HHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChH
Confidence 5577887 9999999999999999999987654666667788999999999998876 344566776543
No 66
>PRK03660 anti-sigma F factor; Provisional
Probab=94.54 E-value=0.095 Score=50.05 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=30.5
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTK 162 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ 162 (762)
...+.|++.||+... +. . .....+.|++....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~---~------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YE---N------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cC---C------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 346789999988542 10 0 111235555555544556899999999974
No 67
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.37 E-value=0.16 Score=61.17 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=33.3
Q ss_pred HHHhhhcHHHHHH----HHHhhhccCccccCCCCCCccEEEEEE--eCCccEEEEEeCCCCCCHHHHHH
Q 004309 105 LRELISNASDALD----KIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 105 LRELIqNA~DA~~----k~r~~~l~~~~~~g~~~~~~~~I~I~~--d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
|..||.||.|+.- .++. . +......|.|.. ..+.-.|+|.|+|.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~--------~--gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLA--------A--GKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHh--------c--CCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999962 1111 0 111123455544 33334689999999999988764
No 68
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.36 E-value=0.044 Score=63.97 Aligned_cols=51 Identities=29% Similarity=0.501 Sum_probs=36.4
Q ss_pred HHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHH
Q 004309 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L 169 (762)
|-=|||||.||++- ...+.+.|+..-+.+.-.|+|+|||.|+..+-+...|
T Consensus 502 LvNLl~NALDA~~~--------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lF 552 (603)
T COG4191 502 LVNLLQNALDAMAG--------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLF 552 (603)
T ss_pred HHHHHHHHHHHhcC--------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhc
Confidence 33499999999862 1223345555555556679999999999998877644
No 69
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.33 E-value=0.097 Score=49.51 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=29.7
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCC
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMT 161 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt 161 (762)
..+.||++||..+. +. + .....+.|.+....+.-.|+|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~----~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE----E-----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC----C-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 46789999988541 10 0 11233455555555556689999999997
No 70
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=94.01 E-value=0.086 Score=61.16 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=47.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
+.|.=||.||.||..+ . .....+.+.|..+.+.-.|.|.|||+||+.+.... +-..|.|.+.
T Consensus 430 tIlGNLidNA~eA~~~-------~------~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk~---- 491 (537)
T COG3290 430 TILGNLIDNALEALLA-------P------EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTKN---- 491 (537)
T ss_pred HHHHHHHHHHHHHhhc-------c------CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCccccC----
Confidence 4556699999999862 0 12233444444444444589999999999988874 4344555321
Q ss_pred hhhccCCCCccccccccceee
Q 004309 183 KMQTSGDLNLIGQFGVGFYSV 203 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~ 203 (762)
.|.-|+|+|=+
T Consensus 492 ----------~~~rGiGL~Lv 502 (537)
T COG3290 492 ----------TGGRGIGLYLV 502 (537)
T ss_pred ----------CCCCchhHHHH
Confidence 47789998743
No 71
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.92 E-value=0.083 Score=67.22 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=44.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEE---eCCc--cEEEEEeCCCCCCHHHHHHHHHHHhcccc
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL---DKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~---d~~~--~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~ 177 (762)
-.|..||+||+++.. ...+.|.+.. +.+. -.|+|.|||+||+.+++..-+..-. .++
T Consensus 831 qvl~NLl~NAik~~~-----------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~-~~~ 892 (1197)
T PRK09959 831 QVLSNLLSNALKFTT-----------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYS-QTS 892 (1197)
T ss_pred HHHHHHHHHHHHhCC-----------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccc-ccc
Confidence 367889999988853 1123444432 2222 2479999999999998875442111 110
Q ss_pred hhHHHhhhccCCCCccccccccceeeeeec
Q 004309 178 SAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 178 ~~f~~~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
.....+..|+|++-|-.++
T Consensus 893 -----------~~~~~~G~GLGL~i~~~iv 911 (1197)
T PRK09959 893 -----------AGRQQTGSGLGLMICKELI 911 (1197)
T ss_pred -----------cCCCCCCcCchHHHHHHHH
Confidence 1112356899998765553
No 72
>PRK09835 sensor kinase CusS; Provisional
Probab=93.60 E-value=0.1 Score=58.86 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=24.6
Q ss_pred ccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHH
Q 004309 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L 169 (762)
.+.|++..+.+.-.|+|.|||.||+.+++...+
T Consensus 396 ~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 396 AITVRCQEVDHQVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred eEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 355666555555579999999999999888544
No 73
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=93.50 E-value=0.16 Score=62.42 Aligned_cols=161 Identities=23% Similarity=0.290 Sum_probs=90.7
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH-------HHHHHhc
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~-------~LgtIa~ 174 (762)
...+.|.|.||+|=.-. +. --.|.|.+++ ++.++|+|||-||+-+.-.+ ...|+..
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~--~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~Lh 193 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GE--CNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLH 193 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CC--CcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEec
Confidence 44778999999995320 11 2357777765 46899999999998743221 1123333
Q ss_pred ccchhHHHhh---------------------------------hc-c-CC-CCccccccccceeeeeeccEEEEEEeeCC
Q 004309 175 SGTSAFVEKM---------------------------------QT-S-GD-LNLIGQFGVGFYSVYLVADYVEVISKHND 218 (762)
Q Consensus 175 Sg~~~f~~~~---------------------------------~~-~-~~-~~~IGqFGIGFyS~FmVadkV~V~Sk~~~ 218 (762)
+|.+ |-... .. . .. .-.-|..|||.-.+=.++.+++|.++..+
T Consensus 194 AGGK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 194 SGGK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCcc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC
Confidence 4322 21100 00 0 00 12478999999888899999999998754
Q ss_pred Ceee--EEEEcCCCceEEEeCCCCCC-CCCCeEEEEEec-cccc-c-c--------------ccHHHHHHHHHHHcCCCC
Q 004309 219 DKQY--VWESKADGAFAISEDTWNEP-LGRGTEIRLHLR-DEAG-E-Y--------------LEESKLKELVKKYSEFIN 278 (762)
Q Consensus 219 ~~~~--~W~s~~~~~f~I~~~~~~~~-~~~GT~I~L~Lk-~~~~-e-~--------------l~~~~l~~likkys~fi~ 278 (762)
..| .|+ .|...-.+... +.. ..+||+|+..-. +.-- . . ++.+.|+.-++.++ |+.
T Consensus 273 -K~y~q~F~-rG~~v~pLkvi--g~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA-fLN 347 (903)
T PTZ00109 273 -KIYSIELS-KGKVTKPLSVF--SCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELS-YLN 347 (903)
T ss_pred -EEEEEEeC-CCcccCCcccc--CCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHh-ccC
Confidence 333 332 12111111111 112 358999987755 3311 1 1 24567777777776 443
Q ss_pred --cceEEee
Q 004309 279 --FPIYIWA 285 (762)
Q Consensus 279 --~PI~l~~ 285 (762)
.-|+++.
T Consensus 348 pGL~I~L~D 356 (903)
T PTZ00109 348 PGLTFYLVD 356 (903)
T ss_pred CCcEEEEEe
Confidence 5555554
No 74
>PRK13557 histidine kinase; Provisional
Probab=93.49 E-value=0.11 Score=59.23 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCCHHHHHHHH
Q 004309 150 ILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 150 ~L~I~DNGiGMt~eeL~~~L 169 (762)
.|+|.|||.||+.+.+..-|
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEcCCCCCCHHHHHhcc
Confidence 58999999999998876533
No 75
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.16 E-value=0.12 Score=53.49 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=35.4
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
...|..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+.+.+..
T Consensus 230 ~~vl~nLi~NAi~~~~-----------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 230 RQVLVNLLSNAIKYTP-----------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHhccCC-----------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 3468899999999962 133455554443346799999999999999654
No 76
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=92.01 E-value=0.27 Score=53.16 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=31.6
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC------------ccEEEEEeCCCCCCHHHHHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE------------KKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~------------~~~L~I~DNGiGMt~eeL~~ 167 (762)
...++.||+||..|... +...|.|..... .-.|.|.|||.||+.+.+..
T Consensus 239 ~~vl~nLl~NA~~~~~~-----------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 239 EQVLLNIVRNALQALGP-----------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHHhcc-----------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 44678999999998631 112344332111 12589999999999987764
No 77
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=91.62 E-value=0.32 Score=48.05 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=51.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..+.|++.||+....+ + .....+.|.+....+.-.+.|.|+|.||+.+.+...+.. .....
T Consensus 45 lav~Ea~~Nai~Hg~~-------~------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~~~--- 105 (161)
T PRK04069 45 IAVSEACTNAVQHAYK-------E------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDISK--- 105 (161)
T ss_pred HHHHHHHHHHHHhccC-------C------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCCCC---
Confidence 4789999999998631 0 112345666666666667999999999997665432210 00000
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEE
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~S 214 (762)
..+... .-|+|++-+-.++|++.+.+
T Consensus 106 ----~~~~~~--~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 106 ----PIEDLR--EGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ----cccccC--CCceeHHHHHHHHHhEEEEc
Confidence 001111 23677766666778777653
No 78
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=91.41 E-value=0.45 Score=44.14 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=52.5
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
..++.|++.||+.+... . .....+.|++..+.+.-.|+|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~---------~----~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~----------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP---------G----DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP----------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC---------C----CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-----------
Confidence 35778999999998641 0 11234566666777777899999999998775543110
Q ss_pred HhhhccCCCCccccccccceeeeeeccEEEE
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 212 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V 212 (762)
........-|.|++=+-.++|++.+
T Consensus 89 ------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0002234446666666667799988
No 79
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=91.28 E-value=0.47 Score=55.91 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=38.5
Q ss_pred HHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCcc--EEEEEeCCCCCCHHHHHHHH
Q 004309 106 RELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 106 RELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMt~eeL~~~L 169 (762)
-=||+||.+|+++.... ..+...|+++.|..+. .+.|.|||.|++.+.+.+.+
T Consensus 606 ~NliKNA~EAi~~~~~~-----------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 606 GNLLKNAAEAIEAVEAE-----------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHhHHHHhhhcccc-----------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 35899999999864321 1111267888776554 57999999999999988754
No 80
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=91.04 E-value=0.3 Score=48.31 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=52.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..+.|++.||+.+.-. . .....+.|.+..+.+.-.+.|+|+|.||+...+...++ ....
T Consensus 45 lav~Ea~~Nai~ha~~-------~------~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~----- 103 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK-------E------GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG----- 103 (159)
T ss_pred HHHHHHHHHHHHhccC-------C------CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC-----
Confidence 4789999999987521 0 12234566666666666789999999998766553111 0000
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEE
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~S 214 (762)
......-..-|.|++-+=-++|.+.+.+
T Consensus 104 ----~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 ----SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ----CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111224788887777888887765
No 81
>PRK13560 hypothetical protein; Provisional
Probab=89.87 E-value=0.34 Score=58.14 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=29.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC---ccEEEEEeCCCCCCHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE---KKILSIRDRGIGMTKE 163 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMt~e 163 (762)
.|.+||+||+.+... ......|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~---------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP---------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc---------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987531 11223455544332 2468999999999874
No 82
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.38 E-value=0.54 Score=49.19 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc--cEEEEEeCCCCCCHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKE 163 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMt~e 163 (762)
++-||++||.-... +. .....+.|.+..+.++ ..++|.|||.|++.+
T Consensus 126 iv~EL~tNa~Khaf------~~-------~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAF------LS-------RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcC------CC-------CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 56699999987753 11 2334556666666664 579999999999854
No 83
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.28 E-value=0.29 Score=54.23 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=36.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI 166 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~ 166 (762)
-+++|.|+||.-.. ....+.|++..+.+.-.|+|.|||.|.+.+...
T Consensus 282 rivQEaltN~~rHa-----------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 282 RIVQEALTNAIRHA-----------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHhcc-----------------CCceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 47899999988663 234567888777777789999999999876654
No 84
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=88.82 E-value=0.43 Score=55.47 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=27.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 163 (762)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||+||+.+
T Consensus 414 il~nlL~NAiKha~-----------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD-----------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 45677777765521 12345555555444569999999999843
No 85
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=88.40 E-value=1.5 Score=49.26 Aligned_cols=124 Identities=23% Similarity=0.253 Sum_probs=74.0
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
...|-||.-||..|.-+.- ..++ ..-+++.|.|...+++-++.|+|-|=|++..++.. |..-..|....
T Consensus 262 ~ymlfElfKNamrATve~h---~~~~-----~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~-- 330 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHH---GDDG-----DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA-- 330 (414)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccCC-----CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC--
Confidence 4578899999999975421 1111 12355677776677778999999999999999886 44555554321
Q ss_pred HhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEeccccccc
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY 260 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~ 260 (762)
..+........--||.|+--+=++|. .. +|...+... .+.||.+.+|||....+.
T Consensus 331 -~~~d~~~~~plaGfG~GLPisrlYa~-------yf-----------~Gdl~L~Sl-----eG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 331 -PSSDNNRTAPLAGFGFGLPISRLYAR-------YF-----------GGDLKLQSL-----EGIGTDVYIYLKALSMEA 385 (414)
T ss_pred -CCCCCCCcCcccccccCCcHHHHHHH-------Hh-----------CCCeeEEee-----eccccceEEEeccCCccc
Confidence 00111113456667777643322221 11 122223221 267999999999766544
No 86
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.13 E-value=0.52 Score=57.30 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=74.3
Q ss_pred HHHHhhhcHHHHH----HHHHhhhccCccccCCCCCCccEEEEEEeCCcc--EEEEEeCCCCCCHHHHHHHHHHHhcccc
Q 004309 104 FLRELISNASDAL----DKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (762)
Q Consensus 104 fLRELIqNA~DA~----~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMt~eeL~~~LgtIa~Sg~ 177 (762)
.|.=||=||+|.+ +.||. . +-.+...|.+..-..++ .|+|+|+|-|++.+-|.+.-..=|-- +
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~--GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli-~ 504 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------A--GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLI-T 504 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------c--CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCC-C
Confidence 4566889999996 23332 1 34556788888655543 37999999999999887632110000 0
Q ss_pred hhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeee---EEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 178 SAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQY---VWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 178 ~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~---~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
.+=.+.|. +.. | +.+=|...|.-|++|+=.|+..=+.-+ ..+. -+|..+|.. ..++||+++|+|-
T Consensus 505 ~~~a~~lS---d~E-i--~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~-LgG~I~V~S-----~~G~GT~Fti~LP 572 (716)
T COG0643 505 EEEAETLS---DEE-I--LNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQ-LGGSISVSS-----EPGKGTTFTIRLP 572 (716)
T ss_pred hHHhccCC---HHH-H--HHHHhcCCCCcchhhhcccCCccCHHHHHHHHHH-cCCEEEEEe-----cCCCCeEEEEecC
Confidence 00000011 100 1 123367788888998877776411100 1111 245666665 3589999999986
Q ss_pred c
Q 004309 255 D 255 (762)
Q Consensus 255 ~ 255 (762)
-
T Consensus 573 L 573 (716)
T COG0643 573 L 573 (716)
T ss_pred c
Confidence 3
No 87
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=86.78 E-value=0.95 Score=53.66 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=43.9
Q ss_pred cEEEEEEe--CCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeec----cEEE
Q 004309 138 LEIQIKLD--KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVE 211 (762)
Q Consensus 138 ~~I~I~~d--~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVa----dkV~ 211 (762)
..|.|..+ .+..++.|.|||+|++.+-+.+-|. |-+- +. ....+-| -|+|++=|--++ -++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~-iFqR--------l~--s~~~y~g-tG~GL~I~kkI~e~H~G~i~ 724 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFV-IFQR--------LH--SRDEYLG-TGLGLAICKKIAERHQGRIW 724 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHH-HHHh--------cC--chhhhcC-CCccHHHHHHHHHHhCceEE
Confidence 45566543 3557899999999999988776443 3221 11 1223445 899998766554 4566
Q ss_pred EEEeeCCCe
Q 004309 212 VISKHNDDK 220 (762)
Q Consensus 212 V~Sk~~~~~ 220 (762)
|.|+..++.
T Consensus 725 vEs~~gEgs 733 (750)
T COG4251 725 VESTPGEGS 733 (750)
T ss_pred EeecCCCce
Confidence 666644333
No 88
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=84.50 E-value=1.3 Score=51.71 Aligned_cols=43 Identities=21% Similarity=0.504 Sum_probs=32.2
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 163 (762)
.+||-++||.-.-. ...+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~-----------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ-----------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc-----------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 68999999976531 23456666666666789999999998854
No 89
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=82.97 E-value=3.3 Score=40.70 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=53.6
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
.+++-|++.||+-+.-+. + .+...+.|.+..+.+.-.++|.|.|.|+. ++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~------~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~--------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------D------PSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG--------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------C------CCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC---------
Confidence 678899999999986431 1 11245677777777777899999997754 444433211
Q ss_pred HhhhccCCCCccccc---cccceeeeeeccEEEEEEee
Q 004309 182 EKMQTSGDLNLIGQF---GVGFYSVYLVADYVEVISKH 216 (762)
Q Consensus 182 ~~~~~~~~~~~IGqF---GIGFyS~FmVadkV~V~Sk~ 216 (762)
....++- |.||+-+=-+.|+|.+....
T Consensus 99 --------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 99 --------DTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred --------CCCCcccccccccHHHHhhhheeEEEEecc
Confidence 1222333 66776665577888777443
No 90
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=76.40 E-value=3.3 Score=47.99 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=16.8
Q ss_pred cEEEEEEe-CCccEEEEEeCCCCCCH
Q 004309 138 LEIQIKLD-KEKKILSIRDRGIGMTK 162 (762)
Q Consensus 138 ~~I~I~~d-~~~~~L~I~DNGiGMt~ 162 (762)
+.|.+... .+.-.|.|.|||+||+.
T Consensus 492 i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 492 IAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred EEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 44554444 23346899999999984
No 91
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=76.18 E-value=8.7 Score=44.28 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc--cEEEEEeCCCCCCHHHHHH
Q 004309 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMt~eeL~~ 167 (762)
+-+|-..|-=||.||.-|+-+ ...+...|.|..-..+ -.+.|.|||+||++.-+..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~--------------~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIE--------------PKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcc--------------cCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 457888888899999999853 1223446666554333 4589999999999987764
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=74.36 E-value=5.3 Score=49.02 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=32.4
Q ss_pred CCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhc
Q 004309 134 DNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAK 174 (762)
Q Consensus 134 ~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~ 174 (762)
...++.|.+..+.++-.+.|.|||-|++.+++.+-|-...+
T Consensus 793 ~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r 833 (890)
T COG2205 793 PGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYR 833 (890)
T ss_pred CCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhc
Confidence 34557777777777778999999999999999987755443
No 93
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=71.27 E-value=5.2 Score=44.78 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=36.5
Q ss_pred cEEEEEEeCCc--cEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCcccccccccee
Q 004309 138 LEIQIKLDKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYS 202 (762)
Q Consensus 138 ~~I~I~~d~~~--~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS 202 (762)
.+|.+.+.... -.++|.|+|+|++++++.+-|-..-+--+ ......|.-|+|++-
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLaI 418 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLAI 418 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHHH
Confidence 35666655433 35899999999999999987755432211 122346888999853
No 94
>PRK13559 hypothetical protein; Provisional
Probab=67.34 E-value=6 Score=43.08 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEE--eC--CccEEEEEeCCCCCCH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DK--EKKILSIRDRGIGMTK 162 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~--d~--~~~~L~I~DNGiGMt~ 162 (762)
.|.|||.||+.+.. ++ .+...|+|.+ .. +.-.|.+.|||.|++.
T Consensus 271 vl~nLi~NA~k~~~------~~---------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------LS---------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------cc---------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67799999976632 11 1123455544 33 2346888999998654
No 95
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=66.99 E-value=3.7 Score=50.16 Aligned_cols=95 Identities=26% Similarity=0.256 Sum_probs=57.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEE--EEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQI--KLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I--~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f 180 (762)
-.+-|||.||+|=+...+-. .. +. .-.+..+|.| ..-..++ |.|+|.||..+-+..++.....+.+ ++
T Consensus 149 ~a~aeLldnalDEi~~~~tf--~~--vd--~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~~~k~-e~ 218 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF--VR--VD--YINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGYSSKK-EA 218 (775)
T ss_pred Chhhhhccccccccccccce--EE--ee--eecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhhhhhh-hh
Confidence 35789999999987642211 00 00 1112222221 1111111 6789999999999988866543322 21
Q ss_pred HHhhhccCCCCccccccccceeeee-eccEEEEEEee
Q 004309 181 VEKMQTSGDLNLIGQFGVGFYSVYL-VADYVEVISKH 216 (762)
Q Consensus 181 ~~~~~~~~~~~~IGqFGIGFyS~Fm-VadkV~V~Sk~ 216 (762)
..-+||+|.||.++-| ++-.+.|.++.
T Consensus 219 ---------~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 219 ---------NSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ---------hhhhhhhccccccchhhhccceeEeehh
Confidence 2568999999997766 67777788874
No 96
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=62.93 E-value=11 Score=43.52 Aligned_cols=49 Identities=33% Similarity=0.215 Sum_probs=35.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC---CccEEEEEeCCCCCCHHHHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMt~eeL~~~L 169 (762)
++--||-||+|||.. ..+.|.|..+. +.-.|-|.|||-|...+-+.+.|
T Consensus 568 VlvNl~~NaldA~~h-----------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 568 VLVNLIVNALDASTH-----------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred HHHHHHHHHHhhhcc-----------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 555789999999862 12467776654 34578999999999987666533
No 97
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=43.68 E-value=31 Score=42.50 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=67.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHHhcc
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKS 175 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~LgtIa~S 175 (762)
..-|.+-||.| |.| ++.. -.|.+.++++++.+.|.+||-|+.-+.... .+|+...|
T Consensus 57 i~dEilvNaad---k~r-----d~~m--------~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts 120 (842)
T KOG0355|consen 57 IFDEILVNAAD---KQR-----DPKM--------NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS 120 (842)
T ss_pred HHHHHhhcccc---ccc-----CCCc--------ceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc
Confidence 34589999999 323 3332 378889999999999999999997654321 35555555
Q ss_pred cchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCC-Ce--eeEEEEcCC--CceEEEeCCCCCCCCCCeEEE
Q 004309 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DK--QYVWESKAD--GAFAISEDTWNEPLGRGTEIR 250 (762)
Q Consensus 176 g~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~-~~--~~~W~s~~~--~~f~I~~~~~~~~~~~GT~I~ 250 (762)
+.-. .....-.-|+-|.|--=|=.++-+.+|.|.... .. ...|..+-. ..-.+... ..+.+|+|+
T Consensus 121 sny~------d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~----~~~~yTkit 190 (842)
T KOG0355|consen 121 SNYD------DDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS----TDEDYTKIT 190 (842)
T ss_pred cccC------CCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC----CCCCcceEE
Confidence 4311 001111235555555545555555555554321 12 235654421 12123322 123399988
Q ss_pred EE
Q 004309 251 LH 252 (762)
Q Consensus 251 L~ 252 (762)
+.
T Consensus 191 F~ 192 (842)
T KOG0355|consen 191 FS 192 (842)
T ss_pred eC
Confidence 75
No 98
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=43.63 E-value=27 Score=40.80 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=53.4
Q ss_pred cCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCC---CCCCHHHHHHHHHHH
Q 004309 96 SLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG---IGMTKEDLIKNLGTI 172 (762)
Q Consensus 96 sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNG---iGMt~eeL~~~LgtI 172 (762)
..+.-|..+|||+|.||+=.-+ | +. ....+.|.|.- ..|.|+-.| .|||.+++.++
T Consensus 266 ~v~dyP~~alREai~NAv~HRD---Y---s~-------~~~~v~I~iyd----DRieI~NPGgl~~gi~~~~l~~~---- 324 (467)
T COG2865 266 EVWDYPLEALREAIINAVIHRD---Y---SI-------RGRNVHIEIYD----DRIEITNPGGLPPGITPEDLLKG---- 324 (467)
T ss_pred ecccCCHHHHHHHHHHHHHhhc---c---cc-------CCCceEEEEEC----CeEEEECCCCCCCCCChhHcccC----
Confidence 4555689999999999985522 2 11 11245555543 368999877 69999998863
Q ss_pred hcccchh-HHHhhhccCCCCccccccccceeee
Q 004309 173 AKSGTSA-FVEKMQTSGDLNLIGQFGVGFYSVY 204 (762)
Q Consensus 173 a~Sg~~~-f~~~~~~~~~~~~IGqFGIGFyS~F 204 (762)
+|-.+. .+.++- .+.++|=+.|.|+-=.|
T Consensus 325 -~s~~RNp~LA~~l--~~~~liE~~GSGi~rm~ 354 (467)
T COG2865 325 -RSKSRNPVLAKVL--RDMGLIEERGSGIRRMF 354 (467)
T ss_pred -CCcccCHHHHHHH--HHhhhHHHhCccHHHHH
Confidence 443332 222221 34678999999984443
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=38.46 E-value=26 Score=43.22 Aligned_cols=52 Identities=27% Similarity=0.456 Sum_probs=34.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceee-eeeccEEEEEEeeC
Q 004309 151 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHN 217 (762)
Q Consensus 151 L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~-FmVadkV~V~Sk~~ 217 (762)
|+..|+|+||+.+++...+- | ......||++|=|+.|. +-.+..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeeccc
Confidence 67899999999999886442 1 12345678888887764 44565666666653
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=37.18 E-value=43 Score=38.01 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCccEEEEEEeCCccEEEEEeCCCCCC
Q 004309 135 NTKLEIQIKLDKEKKILSIRDRGIGMT 161 (762)
Q Consensus 135 ~~~~~I~I~~d~~~~~L~I~DNGiGMt 161 (762)
...+.|.+..+.+.-.+.|.|||+|++
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 345677777777667899999999986
No 101
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=36.83 E-value=37 Score=38.03 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=37.9
Q ss_pred CCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 97 LYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 97 LYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
|-+...+.|--.+|-|.-.+++ + .....+.|.+.-+.+.-+++|+|||.|++..++..
T Consensus 352 l~~e~~talyRv~QEaltNIEr--H-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~ 409 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIER--H-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ 409 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHh--h-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhcc
Confidence 3444556666777888777773 2 12233455555555666899999999998776553
No 102
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=3e+02 Score=30.22 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHhHHhhhhcc--cCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCC
Q 004309 520 WNEFGKSIKLGII--EDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKN 597 (762)
Q Consensus 520 ~~~f~~~lK~G~~--eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg 597 (762)
..--|.+|-.|+. ...+..+.+.+++.=.=.- --.....++.+.. .|||++..--+.+-.-+.+|.++.-|
T Consensus 106 ~ai~GN~iDfgv~G~~~~~lee~~~~~~~~~l~i-----~d~~k~~~~l~~a--~VlYl~DNaGEi~FD~vlie~ik~~~ 178 (285)
T COG1578 106 LAIVGNVIDFGVLGFSPFDLEEEVEKLLDAELYI-----DDSPKLLELLKNA--SVLYLTDNAGEIVFDKVLIEVIKELG 178 (285)
T ss_pred HHHHhcceeeccccCCHhHHHHHHHHhhcCcccc-----cchHHHHHHhccC--cEEEEecCCccHHHHHHHHHHHHhcC
Confidence 3445666666666 3555666666665321110 0112233333333 56666544434333444444444444
Q ss_pred CeEEe
Q 004309 598 YEVIF 602 (762)
Q Consensus 598 ~EVL~ 602 (762)
.+|.+
T Consensus 179 ~~vv~ 183 (285)
T COG1578 179 KKVVV 183 (285)
T ss_pred CceEE
Confidence 44443
No 103
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=27.39 E-value=34 Score=35.38 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=35.1
Q ss_pred eccCCCCeEEEecCCcchHHHHHHHHHh-cccccccccccCCceeEEECCCChhHHHHHHhhcCC
Q 004309 669 NRLDNTPCVVVTSKYGWSANMERIMQSQ-TLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 732 (762)
Q Consensus 669 ~RL~~sP~~lv~~e~g~s~~MeRimkaq-~~~~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d 732 (762)
+|.-.--..||....-+|.-+.|+|-.. ++. =...-...++-.|||.|||.+.|-..+.-+
T Consensus 88 kRV~EGMGLiVLHSGHfSKiFkRLMGTpC~LK---WREAgErERvWvvnp~HPIA~GigE~~~le 149 (261)
T COG4813 88 KRVWEGMGLIVLHSGHFSKIFKRLMGTPCALK---WREAGERERVWVVNPGHPIAEGIGESFELE 149 (261)
T ss_pred HHHhcccceEEEeccchhHHHHHHcCCccccc---hhhcCcceeEEEeCCCCchhhcchhhEEec
Confidence 4444445566665444555555555321 000 001123468999999999999998765443
No 104
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.88 E-value=1.8e+02 Score=25.64 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=43.0
Q ss_pred CCceEEEEeCCCHH-HHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeec
Q 004309 569 GQKDIFYITGANKE-QLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVS 627 (762)
Q Consensus 569 ~Q~~IYY~~g~s~~-~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~ 627 (762)
+.+.+|-++|+++. .+..+|+.-. .|..|||..+.+++.+...|.....++..-|.
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~~---~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiG 80 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAAK---NNAPILLVNNSLPSSVKAFLKSLNIKKVYIIG 80 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHHh---cCCeEEEECCCCCHHHHHHHHHcCCCEEEEEC
Confidence 45778889998864 4555655444 78899999999999999999988777766653
No 105
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.29 E-value=1.1e+02 Score=25.28 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=30.4
Q ss_pred cceecCCC-CcccCHHHHHhhccCCCceEEEEeCCCHHHHhc-ChhHHHHHhCCCeEEec
Q 004309 546 RFESTKSD-GKLTSLDQYISRMKAGQKDIFYITGANKEQLEK-SPFLERLKKKNYEVIFF 603 (762)
Q Consensus 546 rf~ss~~~-~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~-SP~lE~~~~kg~EVL~l 603 (762)
..+|..+. +..+++++|+.+.++..=..+-+|.-+ .+.. -++.+..++.|+.||..
T Consensus 3 H~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~--~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 3 HVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHG--NLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred ccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC--cccCHHHHHHHHHHcCCeEEEE
Confidence 34565553 346788888888765443444444333 1111 23445556667776654
No 106
>PF14501 HATPase_c_5: GHKL domain
Probab=21.48 E-value=1.6e+02 Score=26.40 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=11.5
Q ss_pred cccccccceeeeeecc
Q 004309 193 IGQFGVGFYSVYLVAD 208 (762)
Q Consensus 193 IGqFGIGFyS~FmVad 208 (762)
.+..|+|..++=.+++
T Consensus 63 ~~~~G~GL~~v~~i~~ 78 (100)
T PF14501_consen 63 KKGHGIGLKNVKKILE 78 (100)
T ss_pred CCCCCcCHHHHHHHHH
Confidence 4778899988766544
No 107
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=21.46 E-value=1.4e+02 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhHHhhhhcccCHHhHHHHhhh
Q 004309 513 KGQYTKFWNEFGKSIKLGIIEDAANRNRLAKL 544 (762)
Q Consensus 513 ~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~L 544 (762)
.++|.++|++....+=.+++-||..+-.+.+.
T Consensus 41 ~~KfdKYw~~~~~~l~ia~ILDPR~Kl~~~~~ 72 (101)
T PF14372_consen 41 KEKFDKYWKDCNLLLAIATILDPRFKLEFLEF 72 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHhchHHHHHHHHH
Confidence 45899999999999999999999988766544
No 108
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=21.04 E-value=1.3e+02 Score=33.64 Aligned_cols=56 Identities=27% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCcc-ccCCCCCCccEEEEEEeCCc----cEEEEEeCCCCCCHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKE-VLGEGDNTKLEIQIKLDKEK----KILSIRDRGIGMTKEDLI 166 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~-~~g~~~~~~~~I~I~~d~~~----~~L~I~DNGiGMt~eeL~ 166 (762)
++--|+.||..|+.- |- .+... ++ . +.+-|++++-... -.|.|.|||-|++.+=..
T Consensus 245 v~LNlVrNAaqA~~~-~~--~~~g~I~L--r--TR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~ 305 (363)
T COG3852 245 VFLNLVRNAAQALGG-RA--DEGGEIIL--R--TRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD 305 (363)
T ss_pred HHHHHHHHHHHHhcC-CC--CCCceEEE--E--eccceEEEccCceeEeeeeeEEecCCCCCChHHhh
Confidence 445799999999862 10 00000 11 1 1223334333222 358899999999875433
No 109
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.02 E-value=2.3e+02 Score=25.41 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=19.4
Q ss_pred hhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHH
Q 004309 83 QAEVSRLMDIIINSLYSNKDIFLRELISNASDALD 117 (762)
Q Consensus 83 qae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~ 117 (762)
+.|..+.|++|+. |.|.||++.+-
T Consensus 43 ~p~fPkFLn~LGt-----------eIiEnAVefiL 66 (88)
T PF15144_consen 43 EPDFPKFLNLLGT-----------EIIENAVEFIL 66 (88)
T ss_pred CCchHHHHHHhhH-----------HHHHHHHHHHH
Confidence 3455678888885 89999999985
No 110
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=20.44 E-value=1.7e+02 Score=33.65 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=32.6
Q ss_pred CccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccce
Q 004309 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFY 201 (762)
Q Consensus 136 ~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFy 201 (762)
.+-.|.|.+.++ .-+.| ||.-|+.-+|...|..|| |++|||..
T Consensus 211 ~p~~v~i~F~~G-~pv~i--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~ 253 (394)
T TIGR00032 211 EPEVVTIDFEQG-VPVAL--NGVSLDPVELILEANEIA--------------------GKHGVGRI 253 (394)
T ss_pred CCeEEEEEEEcc-eEEEE--CCccCCHHHHHHHHHHHH--------------------HhcccCcc
Confidence 345777777643 44555 899999999999887776 78889884
Done!