Query 004309
Match_columns 762
No_of_seqs 369 out of 1758
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 3E-171 1E-175 1475.9 47.3 654 77-761 3-676 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 6E-157 2E-161 1356.3 51.8 610 77-761 22-659 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 8E-151 3E-155 1301.5 48.0 596 77-758 4-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-141 8E-146 1209.8 36.2 543 77-697 4-558 (559)
5 3hjc_A Heat shock protein 83-1 100.0 4E-119 1E-123 997.2 33.7 394 341-761 11-422 (444)
6 3q6m_A Heat shock protein HSP 100.0 3E-119 1E-123 994.0 32.0 387 348-761 2-406 (448)
7 2cge_A ATP-dependent molecular 100.0 4E-115 1E-119 960.3 33.5 385 349-761 1-404 (405)
8 1hk7_A Heat shock protein HSP8 100.0 7.2E-94 2.5E-98 753.6 21.9 284 349-659 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 2.2E-93 7.7E-98 754.5 22.9 290 349-681 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 6E-91 2.1E-95 725.8 24.4 263 347-635 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 3.3E-90 1.1E-94 718.2 21.1 257 347-629 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 1.2E-88 4.1E-93 709.9 21.4 261 347-630 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 4.2E-64 1.4E-68 528.5 24.6 264 71-347 17-281 (281)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 3.3E-59 1.1E-63 491.4 18.8 261 76-347 4-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 5.7E-59 2E-63 480.9 16.8 208 76-285 23-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 1.3E-57 4.5E-62 470.4 22.0 210 77-289 16-225 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 2.2E-53 7.5E-58 442.9 21.7 236 45-294 16-251 (256)
18 3t0h_A Heat shock protein HSP 100.0 2.1E-51 7.2E-56 422.8 20.7 216 76-294 8-223 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 6.5E-51 2.2E-55 421.5 19.8 210 75-287 7-221 (236)
20 2wer_A ATP-dependent molecular 100.0 3.1E-47 1.1E-51 389.8 20.9 211 77-289 3-213 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 4.3E-47 1.5E-51 398.6 20.9 211 77-290 45-255 (264)
22 2ior_A Chaperone protein HTPG; 100.0 7E-42 2.4E-46 353.7 17.1 204 77-285 24-232 (235)
23 1sf8_A Chaperone protein HTPG; 99.9 3.9E-28 1.3E-32 228.2 8.6 104 647-759 11-126 (126)
24 1b63_A MUTL; DNA mismatch repa 99.7 1.9E-17 6.6E-22 179.1 10.7 150 95-276 19-183 (333)
25 1h7s_A PMS1 protein homolog 2; 99.6 2.6E-15 9E-20 164.3 7.3 165 86-278 15-196 (365)
26 3h4l_A DNA mismatch repair pro 99.5 1.5E-14 5E-19 158.4 4.2 152 95-277 20-185 (367)
27 3na3_A DNA mismatch repair pro 99.3 3E-13 1E-17 147.0 3.3 155 90-276 17-187 (348)
28 3fv5_A DNA topoisomerase 4 sub 98.9 3.8E-09 1.3E-13 106.6 10.2 160 101-285 18-190 (201)
29 1mu5_A Type II DNA topoisomera 98.9 1.5E-09 5.3E-14 122.4 7.2 146 104-274 36-196 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.8 4.2E-09 1.4E-13 120.4 7.5 148 103-275 34-196 (530)
31 1kij_A DNA gyrase subunit B; t 98.8 8.3E-09 2.8E-13 113.9 7.8 158 102-284 34-204 (390)
32 2q2e_B Type 2 DNA topoisomeras 98.6 1.6E-08 5.4E-13 117.5 4.1 155 102-284 39-211 (621)
33 1s16_A Topoisomerase IV subuni 98.6 1.3E-07 4.4E-12 104.4 11.0 157 102-284 33-203 (390)
34 1ei1_A DNA gyrase B, GYRB; ATP 98.4 3.3E-07 1.1E-11 101.2 8.8 157 100-284 34-205 (391)
35 1zxm_A TOPO IIA ATPase, DNA to 98.4 7.1E-07 2.4E-11 98.8 9.6 149 103-274 55-219 (400)
36 4duh_A DNA gyrase subunit B; s 98.4 5.9E-07 2E-11 91.9 8.0 156 101-285 36-207 (220)
37 3cwv_A DNA gyrase, B subunit, 98.4 1E-06 3.6E-11 96.5 10.5 151 102-284 32-193 (369)
38 4emv_A DNA topoisomerase IV, B 98.3 2.2E-06 7.5E-11 88.0 10.7 155 103-285 43-213 (226)
39 3lnu_A Topoisomerase IV subuni 98.0 8.8E-06 3E-10 90.1 9.2 157 101-284 51-222 (408)
40 3ttz_A DNA gyrase subunit B; p 97.9 2.7E-05 9.4E-10 78.3 8.4 140 102-285 33-180 (198)
41 1pvg_A DNA topoisomerase II; G 97.6 9.2E-05 3.2E-09 82.4 8.5 127 104-255 68-208 (418)
42 1ysr_A Sensor-type histidine k 97.3 0.00016 5.5E-09 67.0 4.5 74 104-207 50-123 (150)
43 4ew8_A Sensor protein DIVL; si 97.3 0.00014 4.7E-09 73.6 3.9 73 103-207 158-230 (268)
44 1id0_A PHOQ histidine kinase; 97.2 0.00011 3.9E-09 67.9 2.6 98 103-255 47-144 (152)
45 1th8_A Anti-sigma F factor; SP 97.2 0.00025 8.4E-09 65.8 4.6 84 103-215 42-125 (145)
46 3jz3_A Sensor protein QSEC; he 97.2 8.2E-05 2.8E-09 72.7 1.4 97 103-255 120-216 (222)
47 3d36_A Sporulation kinase B; G 97.2 0.00018 6E-09 71.4 3.8 74 103-207 126-199 (244)
48 3ehh_A Sensor kinase (YOCF pro 97.2 0.00028 9.5E-09 69.3 5.1 45 104-165 134-178 (218)
49 2btz_A Pyruvate dehydrogenase 97.2 0.00034 1.2E-08 76.3 6.3 116 103-255 234-349 (394)
50 1i58_A Chemotaxis protein CHEA 97.2 0.00017 6E-09 69.6 3.5 57 104-167 51-110 (189)
51 2e0a_A Pyruvate dehydrogenase 97.1 0.00031 1.1E-08 76.7 4.9 117 103-255 233-349 (394)
52 2q8g_A [pyruvate dehydrogenase 97.1 0.00037 1.3E-08 76.4 5.3 116 104-255 247-362 (407)
53 3sl2_A Sensor histidine kinase 97.0 0.00011 3.8E-09 70.3 0.1 102 104-254 47-150 (177)
54 1y8o_A [pyruvate dehydrogenase 97.0 0.0003 1E-08 77.6 3.6 118 103-255 256-373 (419)
55 1gkz_A [3-methyl-2-oxobutanoat 96.8 0.00029 9.9E-09 76.6 1.5 58 102-167 240-297 (388)
56 1bxd_A ENVZ(290-450), protein 96.8 0.00026 8.8E-09 66.5 1.0 74 104-207 51-124 (161)
57 3zxo_A Redox sensor histidine 96.7 0.00036 1.2E-08 62.9 1.1 43 104-164 47-89 (129)
58 1b3q_A Protein (chemotaxis pro 96.6 0.0021 7.3E-08 70.0 6.3 55 105-167 111-169 (379)
59 4gfh_A DNA topoisomerase 2; to 96.6 0.0072 2.5E-07 75.0 11.3 144 104-273 63-223 (1177)
60 1r62_A Nitrogen regulation pro 96.5 0.0012 4E-08 61.1 3.2 73 104-207 52-134 (160)
61 3a0y_A Sensor protein; ATP-LID 96.5 0.00085 2.9E-08 61.7 1.9 48 104-167 51-98 (152)
62 2c2a_A Sensor histidine kinase 96.2 0.0013 4.6E-08 66.3 1.9 80 103-207 141-222 (258)
63 3ehg_A Sensor kinase (YOCF pro 95.9 0.0087 3E-07 54.2 5.7 45 104-165 44-88 (128)
64 3zxq_A Hypoxia sensor histidin 95.3 0.0089 3.1E-07 53.3 3.3 43 104-164 43-85 (124)
65 3a0r_A Sensor protein; four he 94.0 0.026 9E-07 58.7 3.4 48 104-167 248-295 (349)
66 4fpp_A Phosphotransferase; fou 87.0 0.39 1.3E-05 48.5 3.9 45 105-165 151-197 (247)
67 3ke6_A Protein RV1364C/MT1410; 79.4 2.6 9E-05 45.9 6.7 49 102-163 299-348 (399)
68 1ixm_A SPO0B, protein (sporula 68.6 3.1 0.0001 41.2 3.4 55 105-169 110-166 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-171 Score=1475.89 Aligned_cols=654 Identities=51% Similarity=0.851 Sum_probs=553.2
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.++|+||||+++||+||+++||||+++|||||||||+||++|+||+++++++++ ...+++.|+|.+++++++|+|+||
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 80 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTT--TTCCCCCEEEEEEGGGTEEEEEEC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhc--cCCCCcEEEEEEeCCCCEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999877 566778999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEe
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~ 236 (762)
|+|||++||.++|+|||+||+++|+++++.+.+...||||||||||+||||++|+|+|+++++.++.|+++|++.|+|.+
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~ 160 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEee
Confidence 99999999999999999999999998887556778999999999999999999999999988789999999999999998
Q ss_pred CCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchh-HHhhhhhhhhhc
Q 004309 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDE-EEKAEKEEETEK 315 (762)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 315 (762)
++.+...++||+|+|||++++.+|++.++|+++|++||+||+|||+++..++.+.+++++++++++. .+..++++.+++
T Consensus 161 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~ 240 (677)
T 2cg9_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDK 240 (677)
T ss_dssp CCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------------
T ss_pred cCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccccccccc
Confidence 5433466899999999999999999999999999999999999999987665444433222110000 000000000001
Q ss_pred ccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceecccccccee
Q 004309 316 SESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEF 395 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f 395 (762)
+.+. +++++++++++++|++++++++|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|
T Consensus 241 ~~~~-~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~--~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 241 KPKL-EEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ----------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCC--SCCSEEEEEEECSSSCE
T ss_pred cccc-ccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCC--CCchheEEecccccceE
Confidence 1111 11111111345667777888999999999999999999999999999999999999 99999999999999999
Q ss_pred eEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHH
Q 004309 396 KAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKK 475 (762)
Q Consensus 396 ~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~ 475 (762)
+||||||+++|+|+|++ ...+++|+||||||||||+|++|||+||+||||||||+|||||||||+||+|++|++||++
T Consensus 318 ~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~ 395 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFES--KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKN 395 (677)
T ss_dssp EEEEEECSSCCC-----------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhhh--hhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHH
Confidence 99999999999999974 1457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCc
Q 004309 476 LIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGK 555 (762)
Q Consensus 476 l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~ 555 (762)
|++|++++|.+||++ +++|++||++||++||+|+++|+.||++|++||||+||+++++
T Consensus 396 l~kkvl~~l~~la~~----------------------~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~ 453 (677)
T 2cg9_A 396 IVKKLIEAFNEIAED----------------------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 453 (677)
T ss_dssp HHHHHHHHHHHHHSC----------------------SHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTS
T ss_pred HHHHHHHHHHHHHhC----------------------HHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCc
Confidence 999999999999976 4699999999999999999999999999999999999997778
Q ss_pred ccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCC
Q 004309 556 LTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK 635 (762)
Q Consensus 556 ~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~ 635 (762)
++||++||+|||++|+.|||++|+|++++++|||+|.|++||||||||++|||||||++|.+|+|++|++|+++ ++|++
T Consensus 454 ~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~ 532 (677)
T 2cg9_A 454 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEE 532 (677)
T ss_dssp CBCSTTHHHHSCTTCCEEEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCS
T ss_pred eeeHHHHHHhccccCceEEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 98874
Q ss_pred Cc--ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCce
Q 004309 636 DT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKR 711 (762)
Q Consensus 636 ~e--k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kk 711 (762)
++ ++ ++.+++|++|++|||++|+++ |.+|++|.||++||||||++++|||++|+|||++|+++++.+..++..++
T Consensus 533 ~e~~~~~~~~~~~~~~~L~~~~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~ 611 (677)
T 2cg9_A 533 TDEEKAEREKEIKEYEPLTKALKEILGDQ-VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKK 611 (677)
T ss_dssp STTSSTTHHHHHGGGHHHHHHHHHTTCSS-CSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------C
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHhcCCc-ceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCc
Confidence 33 22 556778999999999999999 99999999999999999999999999999999999876554445678899
Q ss_pred eEEECCCChhHHHHHHhhcCC-chhh-----h---------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 712 VLEINPRHPIIKELRERVVKD-PEVE-----F---------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 712 iLEINP~HPlIk~L~~~~~~d-~~d~-----~---------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
+|||||+||||++|+++...| +++. . ++||.++||+.|++||++||.+++
T Consensus 612 ~LeiNp~hpli~~L~~~~~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l 676 (677)
T 2cg9_A 612 TFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 676 (677)
T ss_dssp EEEECTTCHHHHHHHHHHHTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSC
T ss_pred eEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999876543 2211 1 889999999999999999999876
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=6e-157 Score=1356.34 Aligned_cols=610 Identities=54% Similarity=0.943 Sum_probs=517.3
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.++|+||+|+++||+||+++||+|+++|||||||||+||++|+||.+++++..+ ...+++.|+|.+++++++|+|+||
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 99 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVTDT 99 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSS--SSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhc--cCCCccEEEEEEeCCCCEEEEEEC
Confidence 378999999999999999999999999999999999999999999999999876 556778999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhcc-----CCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCc
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA 231 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~-----~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~ 231 (762)
|+|||++||.++|+|||+||++.|+++++.+ .+...||||||||||+||||++|+|+|+++++.++.|+++| |.
T Consensus 100 GiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~ 178 (666)
T 2o1u_A 100 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NE 178 (666)
T ss_dssp SCCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SC
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-Ce
Confidence 9999999999999999999999999888753 46789999999999999999999999999877899999999 89
Q ss_pred eEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhh
Q 004309 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (762)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (762)
|+|.+.+++...++||+|+|+|+++..+|++.++|+++|++||+||++||+++..++.+
T Consensus 179 ~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~--------------------- 237 (666)
T 2o1u_A 179 FSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG--------------------- 237 (666)
T ss_dssp CEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC------------------------
T ss_pred EEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecccccc---------------------
Confidence 99988643335689999999999999999999999999999999999999997643100
Q ss_pred hhhcccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccc
Q 004309 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg 391 (762)
. ++++++|+.+|+.+|||+|+|+++++|+|.+||++++++| .+||+|+|+++||
T Consensus 238 -------~-----------------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~--~~pl~~ih~~~eg 291 (666)
T 2o1u_A 238 -------G-----------------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKES--DDPMAYIHFTAEG 291 (666)
T ss_dssp ----------------------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTT--SCCSEEEEEEECS
T ss_pred -------c-----------------cccccceEEEecCccccccCcccccHHHHHHHHhhhcccc--ccCeeEEEecccC
Confidence 0 0123579999999999999999999999999999999999 8999999999999
Q ss_pred cceeeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHH
Q 004309 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (762)
Q Consensus 392 ~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~ 471 (762)
+++|+|+||+|+.+|+|+|.+.+...+++|+||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 292 ~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~ 371 (666)
T 2o1u_A 292 EVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKV 371 (666)
T ss_dssp SSCEEEEEEECSSCCC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHH
T ss_pred cEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHH
Confidence 99999999999999999987522134789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHH-HHHHHHhHHhhhhcccCHHhHHHHhhhccceec
Q 004309 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYT-KFWNEFGKSIKLGIIEDAANRNRLAKLLRFEST 550 (762)
Q Consensus 472 I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss 550 (762)
||+.|++||+++|.+|+++ +|+ +||++||++||+|+++|+.||++|++||||+||
T Consensus 372 I~~~l~kkv~~~l~~l~~e------------------------~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss 427 (666)
T 2o1u_A 372 IRKKLVRKTLDMIKKIADE------------------------KYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSS 427 (666)
T ss_dssp HHHHHHHHHHHHHHHSCHH------------------------HHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeec
Confidence 9999999999999999875 899 999999999999999999999999999999999
Q ss_pred CCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeecccc
Q 004309 551 KSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEG 630 (762)
Q Consensus 551 ~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~ 630 (762)
+++++++||+|||+|||++|+.|||++|+|++++++|||+|.|++||||||||+||||||||++|.+|+||+|++|++++
T Consensus 428 ~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~ 507 (666)
T 2o1u_A 428 HHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEG 507 (666)
T ss_dssp TSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSC
T ss_pred CCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccc
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc--ch--HHHHHHHHHHHHHHHhh-cccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcc--c-ccc
Q 004309 631 LKLGKDT--KD--KELKESFKELTKWWKGA-LASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTL--S-DAS 702 (762)
Q Consensus 631 ~~l~~~e--k~--~~~~~~~~~L~~~~k~~-L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~--~-~~~ 702 (762)
++|++++ ++ ++.+++|++|++|||++ |+++ |++|++|+||++||||||++++|||++|||||++|++ . +++
T Consensus 508 ~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~ 586 (666)
T 2o1u_A 508 VKFDESEKTKESREAIEKEFEPLLNWMKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDIS 586 (666)
T ss_dssp CCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTT-EEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCC
T ss_pred cccccchhhhhhhhhhHHhHHHHHHHHHhccCCCc-eeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcc
Confidence 9987544 22 45677999999999999 9999 9999999999999999999999999999999999986 2 333
Q ss_pred cccccCCceeEEECCCChhHHHHHHhhcCCchhhh--------------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 703 KQAYMRGKRVLEINPRHPIIKELRERVVKDPEVEF--------------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 703 ~~~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~--------------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
+..++..++||||||+||||++|+++.+.+++++. ++||.++||+.|++||++||.+++
T Consensus 587 ~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l 659 (666)
T 2o1u_A 587 TNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSL 659 (666)
T ss_dssp SCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTS
T ss_pred cccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Confidence 33467889999999999999999987654433211 889999999999999999998765
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=7.6e-151 Score=1301.54 Aligned_cols=596 Identities=40% Similarity=0.725 Sum_probs=509.5
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.++|.||+|+++||++|+++||+|+++|||||||||+||++|+||.+++++.++ ....++.|+|.+++++++|+|+||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 81 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTT--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccc--cCCCCcEEEEEEeCCCcEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999876 556678999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhcc--CCCCccccccccceeeeeeccEEEEEEeeCC---CeeeEEEEcCCCc
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~--~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~---~~~~~W~s~~~~~ 231 (762)
|+|||++||.++|++||+||+++|+++++.. .+...||||||||||+||||++|+|+|++++ +.++.|++.+++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998887642 4678999999999999999999999999976 4689999999999
Q ss_pred eEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhh
Q 004309 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (762)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (762)
|++.+.+ ..++||+|+|+|+++..+|++.++|+++|++||+|+++||+++.. +. +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~--e~----~---------------- 216 (624)
T 2ioq_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--EE----K---------------- 216 (624)
T ss_dssp CEEEEEC---CSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE--EE----C----------------
T ss_pred EEEEECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--cc----c----------------
Confidence 9998752 458999999999999999999999999999999999999999641 00 0
Q ss_pred hhhcccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccc
Q 004309 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg 391 (762)
+ . + + +++|+.+|+.+|+|+|+|+++++++|.+||++++++| .+||+|+|+++||
T Consensus 217 -------~-----------~--~---~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (624)
T 2ioq_A 217 -------D-----------G--E---T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (624)
T ss_dssp -------S-----------S--C---E-EEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCC--SCCSCCEEEEEES
T ss_pred -------c-----------c--c---c-ccceEEEeCCccceEecCccchHHHHHHHHHhhccch--hcCeEEEEecccc
Confidence 0 0 0 0 3579999999999999999999999999999999999 9999999999999
Q ss_pred cceeeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHH
Q 004309 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (762)
Q Consensus 392 ~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~ 471 (762)
+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~ 347 (624)
T 2ioq_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (624)
T ss_dssp SSCEEEEEECCSSCCGGGSSS---SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHH
T ss_pred eEEEEEEEEeCCcCccchhhh---cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHH
Confidence 999999999999999999875 55789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecC
Q 004309 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTK 551 (762)
Q Consensus 472 I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~ 551 (762)
||+.|++||+++|.+||++ ++++|++||++||++||+|+++|+.||++|++||||+||+
T Consensus 348 I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~ 406 (624)
T 2ioq_A 348 LRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTH 406 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETT
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecC
Confidence 9999999999999999999 8999999999999999999999999999999999999998
Q ss_pred CCC--cccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccc
Q 004309 552 SDG--KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (762)
Q Consensus 552 ~~~--~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~ 629 (762)
+++ +++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|.+|+|++|++|+++
T Consensus 407 ~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~ 486 (624)
T 2ioq_A 407 TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKV 486 (624)
T ss_dssp SSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSC
T ss_pred CCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecc
Confidence 653 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-c--ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccc
Q 004309 630 GLKLGKD-T--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQ 704 (762)
Q Consensus 630 ~~~l~~~-e--k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~ 704 (762)
++++++. + ++ ++.+++|++|++|||++|+++ |.+|++|.||++||||||++++|||++|||||++|+ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~------~ 559 (624)
T 2ioq_A 487 DESLEKLADEVDESAKEAEKALTPFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG------Q 559 (624)
T ss_dssp STTTTTCC-------HHHHHHHHHHHHHHHHHSSSS-SSEEEECCCCSSCCEEEECCC----------------------
T ss_pred cccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCC-ceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhh------h
Confidence 9998642 2 22 456789999999999999999 999999999999999999999999999999999885 2
Q ss_pred cccCCceeEEECCCChhHHHHHHhhcCCchhhh------------ccCCCCCCHHHHHHHHHHhhc
Q 004309 705 AYMRGKRVLEINPRHPIIKELRERVVKDPEVEF------------FSHFLLTGKDDFSNPNSMYTS 758 (762)
Q Consensus 705 ~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~------------~sG~~leDp~~fa~ri~~~l~ 758 (762)
.++..+++|||||+||||++|.+ ..++.... ++|++++||+.|++|+++||.
T Consensus 560 ~~~~~~~~LeiN~~hpli~~L~~--~~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 560 KVPEVKYIFELNPDHVLVKRAAD--TEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp -----CCEEEECTTCHHHHTTTS--CCCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred cccccCceEEECCCCHHHHHHHh--hcCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 34567999999999999999965 22322111 889999999999999999985
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=2.2e-141 Score=1209.82 Aligned_cols=543 Identities=42% Similarity=0.782 Sum_probs=440.1
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.++|.||+|+++||++|+++||+||++|||||||||+||++|+||.+++++.++ ....++.|+|.+++++++|+|.||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 81 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--CSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhc--cCCCccEEEEEEeCCCcEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999877 556678999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhcc--CCCCccccccccceeeeeeccEEEEEEeeCC---CeeeEEEEcCCCc
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~--~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~---~~~~~W~s~~~~~ 231 (762)
|+|||++||.++|++||+||+++|+++++.. .+...||||||||||+||||++|+|.|++++ +.++.|++.+++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp SSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998776532 3678999999999999999999999999976 5689999999999
Q ss_pred eEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhhh
Q 004309 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (762)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (762)
|++.+.+ ..++||+|+|+|+++..+|++.++|+++|++||+||++||+++.. +. +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~--e~----~---------------- 216 (559)
T 1y4s_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--EE----K---------------- 216 (559)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE--EC----S----------------
T ss_pred eEEeECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--cc----c----------------
Confidence 9998752 458999999999999999999999999999999999999999651 00 0
Q ss_pred hhhcccCCCCccccccccCCCcccceecccceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccc
Q 004309 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg 391 (762)
+ . + .+++|+.+|+.+|+|+|+|+++++++|.+||++++++| .+||+|+|+++||
T Consensus 217 -------~-----------~--~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (559)
T 1y4s_A 217 -------D-----------G--E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (559)
T ss_dssp -------T-----------T--S----CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCS--SCEEEEEEECCCS
T ss_pred -------c-----------c--c----cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhh--hcCeEEEEeccCC
Confidence 0 0 0 03578999999999999999999999999999999999 9999999999999
Q ss_pred cceeeEEEEecCCCCcchhhhhhcccccceEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHH
Q 004309 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (762)
Q Consensus 392 ~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~ 471 (762)
+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~ 347 (559)
T 1y4s_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (559)
T ss_dssp SSCEEEEEEEESSCCTTCSSS---SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHH
T ss_pred ceEEEEEEEcCCcCcchhhhh---cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHH
Confidence 999999999999999998875 55789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecC
Q 004309 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTK 551 (762)
Q Consensus 472 I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~ 551 (762)
||+.|++||+++|.+||++ ++++|++||++||++||+|+++|+.||++|++||||+||+
T Consensus 348 I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~ 406 (559)
T 1y4s_A 348 LRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTH 406 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSS
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecC
Confidence 9999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCC--cccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccc
Q 004309 552 SDG--KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (762)
Q Consensus 552 ~~~--~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~ 629 (762)
+++ +++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|.+|+|++|++|+++
T Consensus 407 ~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~ 486 (559)
T 1y4s_A 407 TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKV 486 (559)
T ss_dssp CSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC---
T ss_pred CCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccc
Confidence 653 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-c--ch--HHHHHHHHHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhc
Q 004309 630 GLKLGKD-T--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQT 697 (762)
Q Consensus 630 ~~~l~~~-e--k~--~~~~~~~~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~ 697 (762)
++++++. + ++ ++.+++|++|++|||++|+++ |.+|++|+||++||||||++++|||++|||||++|+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~-v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 487 DESLEKLADEVDESAKEAEKALTPFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCC-ceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 9998642 2 22 456778999999999999999 999999999999999999999999999999999874
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=3.7e-119 Score=997.19 Aligned_cols=394 Identities=48% Similarity=0.846 Sum_probs=348.6
Q ss_pred cceeeeccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccc
Q 004309 341 FEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKAN 420 (762)
Q Consensus 341 ~~~e~iN~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ 420 (762)
.+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ 86 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP--NKKRNN 86 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCC----C--CCCCCS
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCc--cCCceeEEEEecccceeeEEEecCCCCCcchhhh--hhhcCC
Confidence 369999999999999999999999999999999999 9999999999999999999999999999999873 245799
Q ss_pred eEEEeeeccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCc
Q 004309 421 LKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDK 500 (762)
Q Consensus 421 ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~ 500 (762)
|+||||||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|++
T Consensus 87 ikLYv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~----------- 155 (444)
T 3hjc_A 87 IKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAE----------- 155 (444)
T ss_dssp EEEEETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred eeEEEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccccCCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCC
Q 004309 501 KDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGAN 580 (762)
Q Consensus 501 ~~~~~~~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s 580 (762)
++++|++||++||++||+|+++|+.||++|++||||+||+++++++||++|++|||++|+.|||++|+|
T Consensus 156 -----------d~e~Y~kFw~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s 224 (444)
T 3hjc_A 156 -----------NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDS 224 (444)
T ss_dssp -----------SHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSC
T ss_pred -----------CHHHHHHHHHHHhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCC
Confidence 478999999999999999999999999999999999999987889999999999999999999999999
Q ss_pred HHHHhcChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhh
Q 004309 581 KEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGA 656 (762)
Q Consensus 581 ~~~~~~SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~~k~~ 656 (762)
++++++|||+|.|++||||||||++||||||+++|.+|+||+|+||+++++++++.+ ++ ++.+++|++|++|||++
T Consensus 225 ~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~ 304 (444)
T 3hjc_A 225 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEV 304 (444)
T ss_dssp HHHHHTCGGGHHHHHHTCCEEEECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHhCCcEEEEeCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986433 22 55677899999999999
Q ss_pred cccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeEEECCCChhHHHHHHhhcCCchhh
Q 004309 657 LASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEVE 736 (762)
Q Consensus 657 L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~ 736 (762)
||++ |++|+||+||++||||||++++|||++|||||++|++.++....++..++||||||+||||++|+++.+.+++++
T Consensus 305 L~~k-V~~V~vS~RL~~sP~~lv~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~ 383 (444)
T 3hjc_A 305 LGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDK 383 (444)
T ss_dssp HGGG-CSEEEECSSCSSSSEEEEBCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCH
T ss_pred hcCc-ceEEEecCCCCCCCeEEEcCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchH
Confidence 9999 999999999999999999999999999999999998765544457788999999999999999999877664332
Q ss_pred h--------------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 737 F--------------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 737 ~--------------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
. ++|+.++||+.|++|+++||.+++
T Consensus 384 ~~~~l~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l 422 (444)
T 3hjc_A 384 AVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGL 422 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Confidence 1 899999999999999999998764
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=3.2e-119 Score=993.99 Aligned_cols=387 Identities=49% Similarity=0.837 Sum_probs=338.0
Q ss_pred cCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEeee
Q 004309 348 DVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRR 427 (762)
Q Consensus 348 ~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrr 427 (762)
.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ...+++|+|||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrr 77 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--RKKKNNIKLYVRR 77 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC-----------CCEEEEETT
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCChheeeeccCCCeeeEEEEEccCCCchhhhhh--hhhccceeEEeee
Confidence 36899999999999999999999999999 9999999999999999999999999999999964 2457999999999
Q ss_pred ccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccC
Q 004309 428 VFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFS 507 (762)
Q Consensus 428 VfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~ 507 (762)
|||||+|++|||+||+||||||||+|||||||||+||+|++|++||++|++||+++|.+|+ +
T Consensus 78 VfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la-~----------------- 139 (448)
T 3q6m_A 78 VFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA-E----------------- 139 (448)
T ss_dssp EEEESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT-S-----------------
T ss_pred eEEecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH-h-----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcC
Q 004309 508 DDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKS 587 (762)
Q Consensus 508 ~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~S 587 (762)
++++|++||++||++||+|+++|..||++|++||||+||+++++++||++||+|||++|+.|||++|+|++++++|
T Consensus 140 ----d~e~Y~~f~~~fg~~lK~Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~s 215 (448)
T 3q6m_A 140 ----DKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANS 215 (448)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTS
T ss_pred ----CHHHHHHHHHHHhHHHHhhhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhC
Confidence 7889999999999999999999999999999999999999877899999999999999999999999999999999
Q ss_pred hhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhcccCCce
Q 004309 588 PFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVD 663 (762)
Q Consensus 588 P~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~~k~~L~~~~V~ 663 (762)
||+|.|++||||||||++||||||+|+|.+|+||+|+||++++++|++++ ++ ++.+++|++|++|||++||++ |+
T Consensus 216 p~lE~~k~kG~EVL~l~d~iDe~~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~k-V~ 294 (448)
T 3q6m_A 216 AFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKK-VE 294 (448)
T ss_dssp GGGHHHHHHTCCEEEECSTHHHHHTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGG-CS
T ss_pred hHHHHHHHCCCEEEEecCchHHHHHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCc-ce
Confidence 99999999999999999999999999999999999999999999987544 22 456778999999999999999 99
Q ss_pred eEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeEEECCCChhHHHHHHhhcCCchhhh------
Q 004309 664 DVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEVEF------ 737 (762)
Q Consensus 664 ~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d~~d~~------ 737 (762)
+|+||+||++||||||++++|||++|||||++|+++++.+..++.++|||||||+||||++|+++.+.++++..
T Consensus 295 ~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~ 374 (448)
T 3q6m_A 295 KVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVI 374 (448)
T ss_dssp EEEECSSCSSSSEEEEECSSSCCHHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred EEEecCCCCCCCeEEEeCCcchhHHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999987765544577889999999999999999998766543221
Q ss_pred --------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 738 --------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 738 --------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
++||.++||+.|++||++||.+++
T Consensus 375 lLyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L 406 (448)
T 3q6m_A 375 LLYETALLSSGFSLEDPQTHANRIYRMIKLGL 406 (448)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHhcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999876
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-115 Score=960.31 Aligned_cols=385 Identities=47% Similarity=0.819 Sum_probs=358.4
Q ss_pred CCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEeeec
Q 004309 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (762)
Q Consensus 349 ~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (762)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++. ..+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~--~~~~~ikLYvrrV 76 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK--KKKNNIKLYVRRV 76 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSC--CCCCCCEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCC--cCCeeEEEeccCCCcceeEEEEecCCCchhhhhhh--hccCCeEEEEeee
Confidence 4799999999999999999999999999 99999999999999999999999999999999752 4478999999999
Q ss_pred cccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 004309 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (762)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (762)
||||+|++|||+||+||||||||+|||||||||+||+|++|++||++|++||+++|.+||++
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~------------------ 138 (405)
T 2cge_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED------------------ 138 (405)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------
T ss_pred EecCchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999975
Q ss_pred CchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 004309 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 588 (762)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP 588 (762)
+++|++||++||.+||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.|||+||+|++++++||
T Consensus 139 ----~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp 214 (405)
T 2cge_A 139 ----SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (405)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCT
T ss_pred ----HHHHHHHHHHhhhhhcchhccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCh
Confidence 5799999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred hHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhcccCCcee
Q 004309 589 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDD 664 (762)
Q Consensus 589 ~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~~k~~L~~~~V~~ 664 (762)
|+|.|++||||||||++||||||+++|.+|+|++|++|+++ ++|++++ ++ ++.++++++|++|||++|+++ |.+
T Consensus 215 ~~E~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~-v~~ 292 (405)
T 2cge_A 215 FLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQ-VEK 292 (405)
T ss_dssp THHHHHHHTCCEEEECSHHHHHHHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CSE
T ss_pred HHHHHHhCCCEEEEecCchHHHHHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCc-ceE
Confidence 99999999999999999999999999999999999999999 8886433 22 445778999999999999999 999
Q ss_pred EEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeEEECCCChhHHHHHHhhcCC-chhhh------
Q 004309 665 VKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD-PEVEF------ 737 (762)
Q Consensus 665 V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiLEINP~HPlIk~L~~~~~~d-~~d~~------ 737 (762)
|++|.||++||||||++++|||++|||||++|+++++.+..++..+++|||||+||||++|+++.+.+ +++..
T Consensus 293 V~~s~rl~~sP~~lv~~~~~~s~~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~ 372 (405)
T 2cge_A 293 VVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTK 372 (405)
T ss_dssp EEECSSCCSSSEEEEECSSSCCHHHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHH
T ss_pred EEEEeccCCCCeEEEeccccccHHHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHH
Confidence 99999999999999999999999999999999876554445677899999999999999999876544 22211
Q ss_pred --------ccCCCCCCHHHHHHHHHHhhcCCC
Q 004309 738 --------FSHFLLTGKDDFSNPNSMYTSLKI 761 (762)
Q Consensus 738 --------~sG~~leDp~~fa~ri~~~l~~~~ 761 (762)
++|+.++||+.|++|+++||.+++
T Consensus 373 ~Lyd~AlL~~G~~~~dp~~f~~r~~~ll~~~l 404 (405)
T 2cge_A 373 LLYETALLTSGFSLDEPTSFASRINRLISLGL 404 (405)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Confidence 889999999999999999998764
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=7.2e-94 Score=753.63 Aligned_cols=284 Identities=49% Similarity=0.878 Sum_probs=240.7
Q ss_pred CCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEeeec
Q 004309 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (762)
Q Consensus 349 ~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (762)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ikLYvrrV 76 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSS--CCCCCCCEEEETTE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCc--ccCeeEEEEeccCCceeEEEEEecCCCcchhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 23478999999999
Q ss_pred cccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 004309 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (762)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (762)
||||+|++|||+||+||||||||+|||||||||+||+|++|++||++|++|++++|.+||+
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~------------------- 137 (288)
T 1hk7_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE------------------- 137 (288)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred EeecchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999984
Q ss_pred CchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 004309 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 588 (762)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~SP 588 (762)
++++|++||++||++||+|+++|..||++|++||||+||+++++++||++||+||+++|+.|||+||+|++++++||
T Consensus 138 ---d~e~Y~kf~~~fg~~lK~Gi~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp 214 (288)
T 1hk7_A 138 ---DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (288)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCG
T ss_pred ---CHHHHHHHHHHHhHHHhhhhcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCH
Confidence 47799999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred hHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhccc
Q 004309 589 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALAS 659 (762)
Q Consensus 589 ~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~~k~~L~~ 659 (762)
|+|+|++||||||||++|||||||++|.+|+|++|+||+++ +++++++ ++ ++.+++|++||+|||++||+
T Consensus 215 ~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 215 FLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp GGHHHHTTTCCCEEECSHHHHHHHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHHHHHHCCCEEEEecCchHHHHHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999998 8886433 22 45577899999999999985
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=2.2e-93 Score=754.51 Aligned_cols=290 Identities=41% Similarity=0.786 Sum_probs=248.3
Q ss_pred CCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEeeec
Q 004309 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (762)
Q Consensus 349 ~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (762)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ..+++|+||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~---~~~~~ikLYvrrV 76 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRV 76 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCC--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST---TCCCSEEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCc--cCcceeEEeccccccceeEEEEecCCCCchhhhh---hccCCeEEEEece
Confidence 5799999999999999999999999999 9999999999999999999999999999999875 4578999999999
Q ss_pred cccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 004309 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (762)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (762)
||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||++
T Consensus 77 fI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~------------------ 138 (303)
T 2gq0_A 77 FIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD------------------ 138 (303)
T ss_dssp EEEEEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred EeecchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCC--CcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 004309 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSD--GKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (762)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~--~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~ 586 (762)
++++|++||++||++||+|+++|+.||++|++||||+||+++ ++++||+||++|||++|+.|||++|+|++++++
T Consensus 139 ---d~e~Y~kF~~~fg~~lK~Gi~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 215 (303)
T 2gq0_A 139 ---DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 215 (303)
T ss_dssp ---CHHHHHHHHHHHHHHHTTHHHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhc
Confidence 899999999999999999999999999999999999999965 579999999999999999999999999999999
Q ss_pred ChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCCCcchHHHHHHHHHHHHHHHhhcccCCce--e
Q 004309 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVD--D 664 (762)
Q Consensus 587 SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~ek~~~~~~~~~~L~~~~k~~L~~~~V~--~ 664 (762)
|||+|.|++||||||||++|||||||++|.+|+|++|++|++++++|++.+ ++.||++ |. +
T Consensus 216 sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~~----------------~~~l~~~-~~~~~ 278 (303)
T 2gq0_A 216 SPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLA----------------DGDLGTL-VPRGS 278 (303)
T ss_dssp CGGGHHHHHHTCCEEEECSTTHHHHTTTCCEETTEEEEETTC--------------------------------------
T ss_pred ChHHHHHHHCCCeEEEeCchhHHHHHHHHHhcCCcceEEeeccccCccccc----------------hhhhccc-cccCC
Confidence 999999999999999999999999999999999999999999999885221 3456777 87 9
Q ss_pred EEEeeccCCCCeEEEec
Q 004309 665 VKVSNRLDNTPCVVVTS 681 (762)
Q Consensus 665 V~vS~RL~~sP~~lv~~ 681 (762)
|.+|+||++||||+++.
T Consensus 279 ~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 279 MAISDPNSSSVDKLAAA 295 (303)
T ss_dssp -----------------
T ss_pred ccccCcCCcchHHHHHH
Confidence 99999999999999873
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=6e-91 Score=725.79 Aligned_cols=263 Identities=51% Similarity=0.954 Sum_probs=249.3
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEee
Q 004309 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (762)
Q Consensus 347 N~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (762)
|.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|++ ...+++|+||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~ 76 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYVR 76 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCCEEEEET
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCchheeeecccCCeeEEEEEEccCCCchhhhhh--hhhcCCeeEEEE
Confidence 467899999999999999999999999999 9999999999999999999999999999999974 245789999999
Q ss_pred eccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 004309 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (762)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (762)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||++|++|++++|.+|| +
T Consensus 77 rVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la-~---------------- 139 (268)
T 3pry_A 77 RVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA-E---------------- 139 (268)
T ss_dssp TEEEESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-T----------------
T ss_pred EEEeecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-h----------------
Confidence 99999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 004309 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (762)
Q Consensus 507 ~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~ 586 (762)
++++|++||++||++||+|+++|..||++|++||||+||+++++++||+|||+|||++|+.|||+||+|++++++
T Consensus 140 -----d~e~Y~~f~~~fg~~lK~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~ 214 (268)
T 3pry_A 140 -----DKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVAN 214 (268)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHT
T ss_pred -----CHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHh
Confidence 788999999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred ChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccccccCCC
Q 004309 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK 635 (762)
Q Consensus 587 SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~ 635 (762)
|||+|+|++||||||||+|||||||+|+|++|+||+|+||++++++|++
T Consensus 215 sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 215 SAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp CHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred ChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeecccccCCCcc
Confidence 9999999999999999999999999999999999999999999999874
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=3.3e-90 Score=718.17 Aligned_cols=257 Identities=51% Similarity=0.934 Sum_probs=241.2
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEee
Q 004309 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (762)
Q Consensus 347 N~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (762)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++. ..+++|+||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~--~~~~~ikLYvr 76 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK--KKKNNIKLYVR 76 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC------CCEEEEET
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCc--cCCeeEEEeeccCcceeEEEEEecCCCchhhhhhh--hccCCeEEEEe
Confidence 789999999999999999999999999999 99999999999999999999999999999999752 44789999999
Q ss_pred eccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 004309 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (762)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (762)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||++
T Consensus 77 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d---------------- 140 (260)
T 1usu_A 77 RVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED---------------- 140 (260)
T ss_dssp TEEEESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred eeEeccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 004309 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (762)
Q Consensus 507 ~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~ 586 (762)
+++|++||++||++||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.|||+||+|++++++
T Consensus 141 ------~e~y~~f~~~fg~~lK~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 214 (260)
T 1usu_A 141 ------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEK 214 (260)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHT
T ss_pred ------HHHHHHHHHHHhhhhcchhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 57999999999999999999999999999999999999876789999999999999999999999999999999
Q ss_pred ChhHHHHHhCCCeEEecCCCCcHHHHHHhhhcCCcceEeeccc
Q 004309 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (762)
Q Consensus 587 SP~lE~~~~kg~EVL~l~dpiDE~~i~~L~ef~gkkf~~V~k~ 629 (762)
|||+|.|++||||||||+||||||||++|.+|+||+|+||+++
T Consensus 215 sp~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 215 SPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp CTTHHHHHHTTCCEEEECSHHHHHHHHHHCEETTEEEEETTCC
T ss_pred ChHHHHHHhCCCeEEEeCCchHHHHHHHHHhhCCceEEecccc
Confidence 9999999999999999999999999999999999999999998
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-88 Score=709.95 Aligned_cols=261 Identities=40% Similarity=0.786 Sum_probs=234.9
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCccceeccccccceeeEEEEecCCCCcchhhhhhcccccceEEEee
Q 004309 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (762)
Q Consensus 347 N~~~piW~r~~~evt~eey~~Fyk~~~~~~~~~~PL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (762)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|.+++...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvr 78 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAY--DDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVK 78 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCC--SCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEET
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCc--cCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEe
Confidence 789999999999999999999999999999 999999999999999999999999999999987655455799999999
Q ss_pred eccccccccccchhhhccccceecCCCCCCccchHhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 004309 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (762)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (762)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||++|++|++++|.+||++
T Consensus 79 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~---------------- 142 (263)
T 1y6z_A 79 RVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKET---------------- 142 (263)
T ss_dssp TEEEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred eeEeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHHHHHhHHhhhhcccCHHhHHHHhhhccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 004309 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (762)
Q Consensus 507 ~~~~~~~~~y~~f~~~f~~~lK~G~~eD~~nr~~l~~LLrf~ss~~~~~~~sL~eYv~rmke~Q~~IYY~~g~s~~~~~~ 586 (762)
++++|++||++||.+||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.|||++|++++++++
T Consensus 143 -----d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 217 (263)
T 1y6z_A 143 -----GGDKWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQN 217 (263)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred -----hHHHHHHHHHHHhHHHccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 889999999999999999999999999999999999999976689999999999999999999999999999999
Q ss_pred ChhHHHHHhCCCeEEecCCCCcHHHHHHh--hhcCCcceEeecccc
Q 004309 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYL--MDYEDKKFQNVSKEG 630 (762)
Q Consensus 587 SP~lE~~~~kg~EVL~l~dpiDE~~i~~L--~ef~gkkf~~V~k~~ 630 (762)
|||+|.|++||||||||++||||+||++| ++|+||+|+||++++
T Consensus 218 sp~~E~~~~kg~EVL~l~~~iDe~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 218 SPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp CGGGHHHHHHTCCCEEECSHHHHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred CcHHHHHHhCCCeEEEeCCcHHHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999999999999999999999999 599999999999974
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=4.2e-64 Score=528.46 Aligned_cols=264 Identities=53% Similarity=0.849 Sum_probs=226.6
Q ss_pred hhccccccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccE
Q 004309 71 RSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKI 150 (762)
Q Consensus 71 ~~~~~~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~ 150 (762)
.+|+...+++.||||+++||+||+++||||+++|||||||||+||++|+||.++++|.++ ...+++.|+|.+|+++++
T Consensus 17 ~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~--~~~~~l~I~I~~d~~~~t 94 (281)
T 3peh_A 17 QGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKNI 94 (281)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTTE
T ss_pred HHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhc--cCCCceEEEEEEcCCCcE
Confidence 456667799999999999999999999999999999999999999999999999999987 677889999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhc-cCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC
Q 004309 151 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (762)
Q Consensus 151 L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~-~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~ 229 (762)
|+|.|||+|||+++|.++|+|||+||++.|+++++. +.+..+|||||||||||||||++|+|.|+++++.+|.|+|+++
T Consensus 95 LtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~ 174 (281)
T 3peh_A 95 LSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTAD 174 (281)
T ss_dssp EEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCC
Confidence 999999999999999999999999999999999875 4567899999999999999999999999998888999999999
Q ss_pred CceEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhh
Q 004309 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEK 309 (762)
Q Consensus 230 ~~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (762)
+.|+|.++++++..++||+|+|||++++.+|+++++|++||++||+||+|||+|+..++.++++++++++ +
T Consensus 175 g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~----~----- 245 (281)
T 3peh_A 175 AKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAK----D----- 245 (281)
T ss_dssp SCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHH----H-----
T ss_pred ccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhh----h-----
Confidence 9999998765567799999999999999999999999999999999999999999999888777542210 0
Q ss_pred hhhhhcccCCCCccccccccCCCcccceecccceeeec
Q 004309 310 EEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN 347 (762)
++.++++.++ +++++ +++++|+|++++++|+|+.+|
T Consensus 246 ~~~~~~~~~~-e~~~~-~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 246 MVNDPNYDSV-KVEET-DDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp HTTCTTSSEE-EECCC-CCTTCCEEEEEEEEEEEEECC
T ss_pred cccccccccc-ccccc-cccccCCcceEEEEEEeEecC
Confidence 0000011111 11121 234567889999999999998
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=3.3e-59 Score=491.40 Aligned_cols=261 Identities=57% Similarity=0.958 Sum_probs=205.0
Q ss_pred cccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEe
Q 004309 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (762)
Q Consensus 76 ~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (762)
..++|.||+++++||+||+++||+|+++|||||||||+||++|+||++++++.++ ...+++.|+|.++++.++|+|.|
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~l~I~D 81 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVTD 81 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhc--cCCCceEEEEEEcCCceEEEEEE
Confidence 4588999999999999999999999999999999999999999999999999877 56677899999999899999999
Q ss_pred CCCCCCHHHHHHHHHHHhcccchhHHHhhhcc-----CCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCC
Q 004309 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADG 230 (762)
Q Consensus 156 NGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~-----~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~ 230 (762)
||+|||+++|.++|++||+||++.|+++++.. .+..+||||||||||+||||++|+|.|+++++.+|.|.+++ |
T Consensus 82 nGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g 160 (269)
T 1qy5_A 82 TGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-N 160 (269)
T ss_dssp CSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-S
T ss_pred CCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-C
Confidence 99999999999999999999999999888753 56789999999999999999999999999877899999999 8
Q ss_pred ceEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCCCCCCCCchhHHhhhhh
Q 004309 231 AFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKE 310 (762)
Q Consensus 231 ~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (762)
.|+|.+.+++...++||+|+|||+++..+|++.++|+++|++||+||+|||+|+..++.+++++++++++++++ +++
T Consensus 161 ~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~---~~~ 237 (269)
T 1qy5_A 161 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEE---KED 237 (269)
T ss_dssp CEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC----------------------
T ss_pred EEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhc---ccc
Confidence 99998864334568999999999999999999999999999999999999999999888777665443221100 000
Q ss_pred hhhhcccCCCCccccccccCCCcccceecccceeeec
Q 004309 311 EETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN 347 (762)
++ +..++ + ++++++++|+|++++++|+|+.+|
T Consensus 238 ~~--~~~~~-~--~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 238 SD--DEAAV-E--EEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ---------------------------CCCEEEEECC
T ss_pred cc--ccccc-c--cccccccccCCceEEEEeeeEecC
Confidence 00 00011 1 112233567888999999999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=5.7e-59 Score=480.92 Aligned_cols=208 Identities=57% Similarity=0.948 Sum_probs=189.4
Q ss_pred cccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccC------------------------
Q 004309 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLG------------------------ 131 (762)
Q Consensus 76 ~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g------------------------ 131 (762)
..++|.||||+++||+||+|+|||||+||||||||||+|||+|+| ++|+++.++|
T Consensus 23 ~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272)
T 3ied_A 23 PVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNE 101 (272)
T ss_dssp ECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred ccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccccccccccccccccccc
Confidence 358999999999999999999999999999999999999999999 8888765431
Q ss_pred ---------C--CCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhcc-CCCCcccccccc
Q 004309 132 ---------E--GDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVG 199 (762)
Q Consensus 132 ---------~--~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~-~~~~~IGqFGIG 199 (762)
+ ...+++.|+|.+|+++++|+|.|||+|||++||.++|+|||+||+++|+++++.+ .+..+|||||||
T Consensus 102 ~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVG 181 (272)
T 3ied_A 102 STDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVG 181 (272)
T ss_dssp ------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCG
T ss_pred ccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccce
Confidence 0 2335689999999999999999999999999999999999999999999998765 578899999999
Q ss_pred ceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCC-----CCCCCCCCeEEEEEecccccccccHHHHHHHHHHHc
Q 004309 200 FYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDT-----WNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYS 274 (762)
Q Consensus 200 FyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~-----~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys 274 (762)
||||||||++|+|+|+ +++.+|.|+|+++|+|+|.+++ .++..++||+|+||||+++.+|+++++|+++|++||
T Consensus 182 FySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys 260 (272)
T 3ied_A 182 FYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYS 260 (272)
T ss_dssp GGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHC
T ss_pred eheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHH
Confidence 9999999999999999 6778999999999999999875 345679999999999999999999999999999999
Q ss_pred CCCCcceEEee
Q 004309 275 EFINFPIYIWA 285 (762)
Q Consensus 275 ~fi~~PI~l~~ 285 (762)
+||+|||+||.
T Consensus 261 ~fi~~PI~l~~ 271 (272)
T 3ied_A 261 EFIKFPIEIWS 271 (272)
T ss_dssp TTCCSCEEECC
T ss_pred hCCCCCeEEEe
Confidence 99999999985
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=1.3e-57 Score=470.37 Aligned_cols=210 Identities=59% Similarity=0.967 Sum_probs=197.0
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.++++||||+++||+||+++||+|+++|||||||||+||++|+||.+++++..+ ...+++.|+|.+|+++++|+|.||
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~L~I~Dn 93 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKL--DSGKELKIDIIPNPQERTLTLVDT 93 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhc--cCCCceEEEEEEeCCccEEEEEeC
Confidence 579999999999999999999999999999999999999999999999999877 566789999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEe
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~ 236 (762)
|+|||++||.++|++||+||++.|+++++.+.+.++||||||||||+||||++|+|.|+++++.+|.|+|++++.|+|.+
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~ 173 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRA 173 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEe
Confidence 99999999999999999999999999887556788999999999999999999999999988889999999999999998
Q ss_pred CCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeee
Q 004309 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEV 289 (762)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~ 289 (762)
++ ++..++||+|+|||++++.+|+++++|+++|++||+||+|||+++.+++.
T Consensus 174 ~~-~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~ 225 (239)
T 3nmq_A 174 DH-GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER 225 (239)
T ss_dssp CC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSCC
T ss_pred cC-CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeeec
Confidence 64 34678999999999999999999999999999999999999999876643
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=2.2e-53 Score=442.89 Aligned_cols=236 Identities=55% Similarity=0.902 Sum_probs=194.1
Q ss_pred cccCCCCCCCCCchhhhhhhhhhhhhhhccccccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhc
Q 004309 45 EKLGAVPNGLSTDSDVAKREAESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSL 124 (762)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l 124 (762)
.+++..+++..++.++++. +..+++.||||+++||++|+++||+|+++|||||||||+||++|+||.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-----------~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l 84 (256)
T 3o0i_A 16 PRGSHMPEETQTQDQPMEE-----------EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 84 (256)
T ss_dssp -------------------------------CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCcccccccccccc-----------ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhc
Confidence 3455555555565555432 23578999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeee
Q 004309 125 TDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVY 204 (762)
Q Consensus 125 ~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~F 204 (762)
+++..+ ...+++.|+|.+|.+.++|+|.|||+|||++||..+|++||+||++.|.+.++.+.+...|||||+||||+|
T Consensus 85 ~~~~~~--~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f 162 (256)
T 3o0i_A 85 TDPSKL--DSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY 162 (256)
T ss_dssp HCGGGG--TTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG
T ss_pred cCchhc--cCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhh
Confidence 999877 566788999999999999999999999999999999999999999999888864456789999999999999
Q ss_pred eeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEe
Q 004309 205 LVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIW 284 (762)
Q Consensus 205 mVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~ 284 (762)
+||++|+|.|+++++.+|.|++.+++.|++.+++ +...++||+|+|+||.+..+|++.++|+++|++||+||+|||+++
T Consensus 163 ~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~-~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~ 241 (256)
T 3o0i_A 163 LVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 241 (256)
T ss_dssp GTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEEC
T ss_pred ccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC-CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEe
Confidence 9999999999998878999999999999999864 345689999999999999999999999999999999999999999
Q ss_pred eeeeeeccCC
Q 004309 285 ASKEVDVDVP 294 (762)
Q Consensus 285 ~~~~~~~~~~ 294 (762)
..++.+++++
T Consensus 242 ~~~~~~~~~~ 251 (256)
T 3o0i_A 242 VEKERDKEVS 251 (256)
T ss_dssp CC--------
T ss_pred eeeeecccCC
Confidence 8876665554
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=2.1e-51 Score=422.83 Aligned_cols=216 Identities=59% Similarity=0.969 Sum_probs=192.5
Q ss_pred cccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEe
Q 004309 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (762)
Q Consensus 76 ~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (762)
..++++||||+++||++|+++||+++++|||||||||+||++++||.+++++..+ ...+++.|+|.++.+.++|+|.|
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~--~~~~~i~I~I~~d~~~~~i~V~D 85 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL--DSGKELHINLIPNKQDRTLTIVD 85 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccc--cCCCceEEEEEEeCCeeEEEEEe
Confidence 3579999999999999999999999999999999999999999999999998876 55667899999999899999999
Q ss_pred CCCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEE
Q 004309 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (762)
Q Consensus 156 NGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~ 235 (762)
||+|||+++|..+|++||+||++.|.+.++.+.+...||+||+||||+|+||++|+|.|++.++.++.|++.+++.|++.
T Consensus 86 nG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~ 165 (228)
T 3t0h_A 86 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 165 (228)
T ss_dssp CSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEe
Confidence 99999999999999999999999998877644467899999999999999999999999998778999999999999998
Q ss_pred eCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeeeccCC
Q 004309 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 294 (762)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~~~~~ 294 (762)
+.+ +...++||+|+|+||.+..+|++.++|+++|++||+||+|||+++..++.+++++
T Consensus 166 ~~~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 166 TDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred ecC-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 864 2356899999999999999999999999999999999999999998776555443
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=6.5e-51 Score=421.54 Aligned_cols=210 Identities=62% Similarity=1.000 Sum_probs=178.1
Q ss_pred ccccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEE
Q 004309 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIR 154 (762)
Q Consensus 75 ~~~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~ 154 (762)
+..+++.||+++++|+++|+++||++|++|||||||||+||++++||.+++++.++ ...+++.|+|.++.+.++|+|.
T Consensus 7 ~~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~--~~~~~~~I~i~~d~~~~~i~I~ 84 (236)
T 2gqp_A 7 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVT 84 (236)
T ss_dssp HTTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEEE
T ss_pred ccccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccc--cCCCceEEEEEEcCCCCEEEEE
Confidence 34588999999999999999999999999999999999999999999999998876 5566789999999888999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcccchhHHHhhhcc-----CCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC
Q 004309 155 DRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (762)
Q Consensus 155 DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~-----~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~ 229 (762)
|||+||+++||.++|++||+||++.|+++++.. .+...||||||||||+||||++|+|.|++.++.++.|++++
T Consensus 85 DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g- 163 (236)
T 2gqp_A 85 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS- 163 (236)
T ss_dssp ECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-
T ss_pred ECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-
Confidence 999999999999999999999999998877643 45679999999999999999999999999877799999998
Q ss_pred CceEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeee
Q 004309 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASK 287 (762)
Q Consensus 230 ~~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~ 287 (762)
|.|++.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++..+
T Consensus 164 g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 164 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 8999987642234679999999999999999999999999999999999999998653
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=3.1e-47 Score=389.80 Aligned_cols=211 Identities=59% Similarity=0.959 Sum_probs=192.3
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.+++.||+++++|+++|+++||+++.+|||||||||+||++++|+.+++++..+ ...+++.|+|..+.+..+|+|.||
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~--~~~~~i~I~i~~~~~~~~i~I~Dn 80 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--GGCCCCCEEEEEEGGGTEEEEEEC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhc--cCCCcEEEEEEECCCCCEEEEEEc
Confidence 578999999999999999999999999999999999999999999999998876 445677899988888889999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEe
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~ 236 (762)
|+||++++|.++|++||+||++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|.+++++.|++.+
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~ 160 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeec
Confidence 99999999999999999999999998887555778999999999999999999999999987779999999999999987
Q ss_pred CCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeee
Q 004309 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEV 289 (762)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~ 289 (762)
.+......+||+|+|+|+.+..+|++.++|+++|++||+|+++||+++..++.
T Consensus 161 ~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~ 213 (220)
T 2wer_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEV 213 (220)
T ss_dssp CSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCC
T ss_pred ccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 53223568999999999999999999999999999999999999999876533
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=4.3e-47 Score=398.62 Aligned_cols=211 Identities=59% Similarity=0.982 Sum_probs=191.1
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.+++.||+|+++|+++|+++||++|.+|||||||||+||++++|+.+++++.++ ...+.+.|+|..+.+..+|+|.||
T Consensus 45 ~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~--~~~~~i~I~i~~d~~~~~I~I~Dn 122 (264)
T 1yc1_A 45 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKL--DSGKELHINLIPNKQDRTLTIVDT 122 (264)
T ss_dssp EEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--GGCCCCCEEEEEETTTTEEEEEEC
T ss_pred ceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCcccc--CCCCeEEEEEEECCCeeEEEEEEC
Confidence 478999999999999999999999999999999999999999999999998876 445678899988888889999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEe
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~ 236 (762)
|+||+++||.++|++||+||++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.+
T Consensus 123 G~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~ 202 (264)
T 1yc1_A 123 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRT 202 (264)
T ss_dssp SCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEE
T ss_pred CcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEee
Confidence 99999999999999999999999988887555678999999999999999999999999987779999999999999988
Q ss_pred CCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEeeeeeee
Q 004309 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVD 290 (762)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~~~~~~ 290 (762)
.+ .....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++..++.+
T Consensus 203 ~~-~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~ 255 (264)
T 1yc1_A 203 DT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERD 255 (264)
T ss_dssp CC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC---
T ss_pred cC-CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccccc
Confidence 53 234679999999999999999999999999999999999999998865443
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=7e-42 Score=353.74 Aligned_cols=204 Identities=46% Similarity=0.820 Sum_probs=183.0
Q ss_pred ccccchhhcHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeC
Q 004309 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (762)
Q Consensus 77 ~e~~~Fqae~~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (762)
.+++.||+++++|+++|+++||++|.+|||||||||+||++++|+.+++++.+. ....++.|+|.++.++.+|+|.||
T Consensus 24 ~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~--~~~~~~~I~i~~~~~~~~i~I~Dn 101 (235)
T 2ior_A 24 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 101 (235)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGG--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred cccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCcccc--CCCceEEEEEEEcCCceEEEEEEC
Confidence 478999999999999999999999999999999999999999999999988765 445667899998888889999999
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHhhhc--cCCCCccccccccceeeeeeccEEEEEEeeCC---CeeeEEEEcCCCc
Q 004309 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQT--SGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (762)
Q Consensus 157 GiGMt~eeL~~~LgtIa~Sg~~~f~~~~~~--~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~---~~~~~W~s~~~~~ 231 (762)
|+||+++||..+|++||+||++.|.++++. ..+...+|+||+||||+|++|++|+|.|++.+ ..++.|.+++++.
T Consensus 102 G~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~ 181 (235)
T 2ior_A 102 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 181 (235)
T ss_dssp SSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCc
Confidence 999999999999999999999999876541 12356899999999999999999999999975 4589999999999
Q ss_pred eEEEeCCCCCCCCCCeEEEEEecccccccccHHHHHHHHHHHcCCCCcceEEee
Q 004309 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWA 285 (762)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~likkys~fi~~PI~l~~ 285 (762)
|++.+.+ ...+||+|+|+|+++..+|++.++|+++|++||+|+++||+++.
T Consensus 182 ~~i~~~~---~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 182 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred EEEeeCC---CCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 9998742 45799999999999999999999999999999999999999974
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.95 E-value=3.9e-28 Score=228.21 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=89.9
Q ss_pred HHHHHHHHhhcccCCceeEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcccccccccccCCceeEEECCCChhHHHHH
Q 004309 647 KELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELR 726 (762)
Q Consensus 647 ~~L~~~~k~~L~~~~V~~V~vS~RL~~sP~~lv~~e~g~s~~MeRimkaq~~~~~~~~~~~~~kkiLEINP~HPlIk~L~ 726 (762)
..+++|||++||++ |++|++|+||++||||||++++|||++|||||++|+ +.++..||||||||+||||++|+
T Consensus 11 ~~~~~~~K~~L~dk-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~------~~~~~~k~~LEINp~HplIk~L~ 83 (126)
T 1sf8_A 11 GSFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG------QKVPEVKYIFELNPDHVLVKRAA 83 (126)
T ss_dssp -CHHHHHHHHHGGG-SSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTT------SCCCCCCCEEEECTTSHHHHHHH
T ss_pred hHHHHHHHHHhcCc-ccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhc------cccccCCeeeeECCCCHHHHHHH
Confidence 35899999999999 999999999999999999999999999999999884 23456899999999999999998
Q ss_pred HhhcCCchhh---h---------ccCCCCCCHHHHHHHHHHhhcC
Q 004309 727 ERVVKDPEVE---F---------FSHFLLTGKDDFSNPNSMYTSL 759 (762)
Q Consensus 727 ~~~~~d~~d~---~---------~sG~~leDp~~fa~ri~~~l~~ 759 (762)
+. .+++.. . ++||.++||+.|++|+++||..
T Consensus 84 ~~--~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~~ 126 (126)
T 1sf8_A 84 DT--EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS 126 (126)
T ss_dssp HC--CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHC
T ss_pred Hh--cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHhC
Confidence 63 222211 1 8999999999999999999863
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.70 E-value=1.9e-17 Score=179.12 Aligned_cols=150 Identities=20% Similarity=0.364 Sum_probs=110.5
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc-cEEEEEeCCCCCCHHHHHHHHHHHh
Q 004309 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (762)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~LgtIa 173 (762)
-....++..+|+|||+||+||.+ -.|.|.++.++ ..|+|.|||+||+++++...+.+++
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a--------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 78 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA--------------------TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHA 78 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC--------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTC
T ss_pred CCchhCHHHHHHHHHHHHHHCCC--------------------CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccc
Confidence 34456899999999999999963 14566555543 6899999999999999999998888
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCC-eeeEEEEcCCC-ceEEEeCCCCCCCCCCeEEEE
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADG-AFAISEDTWNEPLGRGTEIRL 251 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~-~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L 251 (762)
+|....+ +.+. ....+|++|+|++|++++| +|+|+|++.++ .+|.|..+|+. .+.+.+. ..++||+|++
T Consensus 79 tsK~~~~-~d~~---~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v 149 (333)
T 1b63_A 79 TSKIASL-DDLE---AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEV 149 (333)
T ss_dssp CSSCCSH-HHHH---TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEE
T ss_pred ccCcccc-chhh---hccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEE
Confidence 7743222 1121 2356899999999999999 89999998754 47777777654 4455442 3478999999
Q ss_pred E------------ecccccccccHHHHHHHHHHHcCC
Q 004309 252 H------------LRDEAGEYLEESKLKELVKKYSEF 276 (762)
Q Consensus 252 ~------------Lk~~~~e~l~~~~l~~likkys~f 276 (762)
+ ++....+| .+|++++++|+-.
T Consensus 150 ~~Lf~n~P~r~kflk~~~~e~---~~i~~~~~~~al~ 183 (333)
T 1b63_A 150 LDLFYNTPARRKFLRTEKTEF---NHIDEIIRRIALA 183 (333)
T ss_dssp ESTTTTCHHHHHTCCCHHHHH---HHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhccHHHHH---HHHHHHHHHHhcc
Confidence 8 23222222 7899999999853
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.55 E-value=2.6e-15 Score=164.35 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCCC-----chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC-CccEEEEEeCCCC
Q 004309 86 VSRLMDIIINSLYSN-----KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIG 159 (762)
Q Consensus 86 ~~~ll~ll~~sLYs~-----~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiG 159 (762)
++.|-+.+++.+++. +..+|+|||+||+||.+ . .|.|.+.. +...|+|.|||.|
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a------------------~--~I~I~i~~~~~~~I~V~DnG~G 74 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA------------------T--NIDLKLKDYGVDLIEVSDNGCG 74 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTC------------------S--EEEEEEEGGGTSEEEEEECSCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCcEEEEEEECCCC
Confidence 556666777777764 58999999999999942 1 45555543 3458999999999
Q ss_pred CCHHHHHHHHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCC-eeeEEEEcCCCceEEEeCC
Q 004309 160 MTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAFAISEDT 238 (762)
Q Consensus 160 Mt~eeL~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~-~~~~W~s~~~~~f~I~~~~ 238 (762)
|+.+++...+..+++|....+ .+.......|++|+|++|+++|| +|+|+|++.++ .+|.|..+++|.+.....
T Consensus 75 i~~~~l~~~f~~~~tsK~~~~----~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~- 148 (365)
T 1h7s_A 75 VEEENFEGLTLKHHTSKIQEF----ADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKTP- 148 (365)
T ss_dssp CCGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEEE-
T ss_pred cCHHHHHHHhhhccccccccc----cchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeecc-
Confidence 999999988888877632211 00011234799999999999999 99999998754 489999886666554331
Q ss_pred CCCCCCCCeEEEEE-eccc--c--cccc-----cHHHHHHHHHHHcCCCC
Q 004309 239 WNEPLGRGTEIRLH-LRDE--A--GEYL-----EESKLKELVKKYSEFIN 278 (762)
Q Consensus 239 ~~~~~~~GT~I~L~-Lk~~--~--~e~l-----~~~~l~~likkys~fi~ 278 (762)
....+||+|+++ |-.. . .+|+ +-.+|++++++|+-+-|
T Consensus 149 --~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 149 --YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp --CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred --cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 235789999997 3211 1 1132 34788999999987654
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.5e-14 Score=158.40 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=104.8
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC-CccEEEEEeCCCCCCHHHHHHHHHHHh
Q 004309 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIA 173 (762)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMt~eeL~~~LgtIa 173 (762)
.....++...|+|||+||+||.+ . .|.|.+.. +...|+|.|||.||+.+++...+...+
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a------------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 79 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANA------------------N--QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHY 79 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTC------------------S--EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEE
T ss_pred CCcccCHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccc
Confidence 33446788999999999999953 1 45555543 345899999999999999886443333
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEE--
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL-- 251 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L-- 251 (762)
.|....+ +.+ ......|.+|+|++|+++|| +|+|+|++.++.++.|..+++|.+.... + ...++||+|++
T Consensus 80 tsK~~~~-~Dl---~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~--~~~~~GTtV~v~~ 151 (367)
T 3h4l_A 80 TSKIAKF-QDV---AKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T--TSRNKGTTVLVSQ 151 (367)
T ss_dssp C-------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E--ECCSSEEEEEEES
T ss_pred cCcCCch-hhh---hhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c--ccCCCCeEEEEch
Confidence 3322211 111 12234688899999999999 7999999876678999998666654332 1 23478999999
Q ss_pred -----------EecccccccccHHHHHHHHHHHcCCC
Q 004309 252 -----------HLRDEAGEYLEESKLKELVKKYSEFI 277 (762)
Q Consensus 252 -----------~Lk~~~~e~l~~~~l~~likkys~fi 277 (762)
+++....+| .+|++++++|+-.-
T Consensus 152 LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~~ 185 (367)
T 3h4l_A 152 LFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAIIN 185 (367)
T ss_dssp TTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHHC
T ss_pred hhccCchhhhhhccchHHHH---HHHHHHHHHHHhhC
Confidence 445444444 68999999998643
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.33 E-value=3e-13 Score=146.98 Aligned_cols=155 Identities=26% Similarity=0.332 Sum_probs=102.4
Q ss_pred HHHHH-HcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc-cEEEEEeCCCCCCHHHHHH
Q 004309 90 MDIII-NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 90 l~ll~-~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~ 167 (762)
...|. ...-..+...|.|||.||+||.+ . .|.|.++.++ ..|+|.|||.||+.+++..
T Consensus 17 ~~~Iaagevi~~~~~vv~eLv~NAidA~a------------------~--~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~ 76 (348)
T 3na3_A 17 VNRIAAGEVIQRPANAIKEMIENCLDAKS------------------T--SIQVIVKEGGLKLIQIQDNGTGIRKEDLDI 76 (348)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHTTC------------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGGGT
T ss_pred HHhhcccCcccCHHHHHHHHHHHHHHcCC------------------C--EEEEEEEeCCEEEEEEEECCcCcChHHhhh
Confidence 33443 33446789999999999999942 1 4555555444 4699999999999999876
Q ss_pred HHHHHhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCC-eeeEEEEcCCCce-EEEeCCCCCCCCC
Q 004309 168 NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAF-AISEDTWNEPLGR 245 (762)
Q Consensus 168 ~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~-~~~~W~s~~~~~f-~I~~~~~~~~~~~ 245 (762)
.+...+.|....+ +.+ ......|.+|+|++|..+|| +++|+|+..++ .+|.|...++... .+.+. ...+
T Consensus 77 ~~~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~ 147 (348)
T 3na3_A 77 VCERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQ 147 (348)
T ss_dssp TTSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCS
T ss_pred hhccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCC
Confidence 4433333322211 001 11245699999999999998 89999999754 5889988754221 23332 3478
Q ss_pred CeEEEEE------------ecccccccccHHHHHHHHHHHcCC
Q 004309 246 GTEIRLH------------LRDEAGEYLEESKLKELVKKYSEF 276 (762)
Q Consensus 246 GT~I~L~------------Lk~~~~e~l~~~~l~~likkys~f 276 (762)
||+|++. |+....+ -.+|++++++|+-.
T Consensus 148 GTtV~v~~LF~n~P~R~k~lk~~~~e---~~~i~~~l~~~Al~ 187 (348)
T 3na3_A 148 GTQITVEDLFYNIATRRKALKNPSEE---YGKILEVVGRYSVH 187 (348)
T ss_dssp EEEEEEESTTTTCHHHHHTSCCHHHH---HHHHHHHHHHHHHH
T ss_pred CcEEEECcccccCchhhhhccccHHH---HHHHHHHHHHHHhh
Confidence 9999994 4443333 37899999999854
No 28
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.90 E-value=3.8e-09 Score=106.62 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=88.9
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHH--------HHHHHHH
Q 004309 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL--------IKNLGTI 172 (762)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL--------~~~LgtI 172 (762)
+...++|||.||+||... +. .-.|.|.++.+ ..|+|.|||.||+.+++ .-.++..
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~--a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ 80 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GH--AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 80 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TC--CSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHhc--------------CC--CcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeee
Confidence 477899999999999641 11 23577777654 48999999999999884 2223332
Q ss_pred hcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCce--EEEeCCCCCCCCCCeEEE
Q 004309 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF--AISEDTWNEPLGRGTEIR 250 (762)
Q Consensus 173 a~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f--~I~~~~~~~~~~~GT~I~ 250 (762)
-.+|+ |-... ..-..|..|+|..|+..||++++|+|+..+ ..|.....+ |.. .+...........||+|+
T Consensus 81 hatsK--~~~~~----~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V~ 152 (201)
T 3fv5_A 81 HAGGK--FSNKN----YQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVH 152 (201)
T ss_dssp ---------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEEE
T ss_pred ccccC--cCCCc----ccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEEE
Confidence 22222 32111 112479999999999999999999999754 344333332 321 222211011146899999
Q ss_pred EEecccc--cccccHHHHHHHHHHHcCCC-CcceEEee
Q 004309 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (762)
Q Consensus 251 L~Lk~~~--~e~l~~~~l~~likkys~fi-~~PI~l~~ 285 (762)
+.-.... ..-.+...|.++++.|+-.- ...|.+..
T Consensus 153 f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 153 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9632211 11246688999999997432 35555543
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.88 E-value=1.5e-09 Score=122.44 Aligned_cols=146 Identities=21% Similarity=0.305 Sum_probs=94.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC---CccEEEEEeCCCCCCHHHHHHHHHHHhcccchhH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f 180 (762)
.|+|||+||+||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...+.....+++.
T Consensus 36 vl~nLv~NAida~~~--------g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 36 TVRELIENSLDATDV--------H-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHTTGG--------G-----TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHhhc--------C-----CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 567999999999741 0 11123444444332 33469999999999999998766544222221
Q ss_pred HHhhhccCCCCccccccccceeeeeeccE-----EEEEEeeCCCe-eeEEEE--c----CCCceEEEeCCCCCCCCCCeE
Q 004309 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDK-QYVWES--K----ADGAFAISEDTWNEPLGRGTE 248 (762)
Q Consensus 181 ~~~~~~~~~~~~IGqFGIGFyS~FmVadk-----V~V~Sk~~~~~-~~~W~s--~----~~~~f~I~~~~~~~~~~~GT~ 248 (762)
......|.+|+|++++..+++. +.|.|+..++. ++.|.- . ++..+...+.+ .....+||+
T Consensus 101 -------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 172 (471)
T 1mu5_A 101 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 172 (471)
T ss_dssp -------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCEEE
T ss_pred -------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCCEE
Confidence 1224568899999999999986 99999886543 555541 1 22233333321 123478999
Q ss_pred EEEEecccccccccHHHHHHHHHHHc
Q 004309 249 IRLHLRDEAGEYLEESKLKELVKKYS 274 (762)
Q Consensus 249 I~L~Lk~~~~e~l~~~~l~~likkys 274 (762)
|++.++.+..++ ...|.+++++|+
T Consensus 173 V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 173 VAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEcCCcchH--HHHHHHHHHHHH
Confidence 999987654322 257899999987
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.80 E-value=4.2e-09 Score=120.44 Aligned_cols=148 Identities=21% Similarity=0.285 Sum_probs=96.0
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeC---CccEEEEEeCCCCCCHHHHHHHHHHHhcccchh
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~ 179 (762)
..|+|||+||+||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...|.....+++.
T Consensus 34 qvl~NLV~NAida~~~--------g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~- 99 (530)
T 2zbk_B 34 QTVRELIENSLDATDV--------H-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY- 99 (530)
T ss_dssp HHHHHHHHHHHTTTTT--------T-----TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-
T ss_pred HHHHHHHHHHHHHHhc--------c-----CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-
Confidence 3678999999999641 0 11124566665543 34579999999999999998766544222221
Q ss_pred HHHhhhccCCCCccccccccceeeeeecc-----EEEEEEeeCCCe-eeEEE----Ec--CCCceEEEeCCCCCCCCCCe
Q 004309 180 FVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWE----SK--ADGAFAISEDTWNEPLGRGT 247 (762)
Q Consensus 180 f~~~~~~~~~~~~IGqFGIGFyS~FmVad-----kV~V~Sk~~~~~-~~~W~----s~--~~~~f~I~~~~~~~~~~~GT 247 (762)
......|.+|+|++++..+++ ++.|.|+..++. ++.|. .. ++......+.+ .....+||
T Consensus 100 --------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT 170 (530)
T 2zbk_B 100 --------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGT 170 (530)
T ss_dssp --------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCEE
T ss_pred --------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCCc
Confidence 112456899999999999988 799999876543 55443 11 11122333321 11247899
Q ss_pred EEEEEecccccccccHHHHHHHHHHHcC
Q 004309 248 EIRLHLRDEAGEYLEESKLKELVKKYSE 275 (762)
Q Consensus 248 ~I~L~Lk~~~~e~l~~~~l~~likkys~ 275 (762)
+|++.++.+..++ ...+.+++++|+-
T Consensus 171 ~V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 171 SVAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEEeccchhhH--HHHHHHHHHHHHH
Confidence 9999987654322 2678999999874
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.76 E-value=8.3e-09 Score=113.92 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=97.9
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH-------HHHHHhc
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~-------~LgtIa~ 174 (762)
...|+|||.||+|+.- +. ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+...
T Consensus 34 ~~~v~Elv~N~iD~a~--~~--------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~ 96 (390)
T 1kij_A 34 HHLFKEILDNAVDEAL--AG--------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLH 96 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TT--------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhh--hC--------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeee
Confidence 3478899999999973 21 123677777655 4899999999999998743 2333333
Q ss_pred ccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC-CceEEEeCCCCCCCCCCeEEEEEe
Q 004309 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHL 253 (762)
Q Consensus 175 Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~-~~f~I~~~~~~~~~~~GT~I~L~L 253 (762)
.|.+ |-. .......|.+|+|+.++..++++++|+|+..+ ..|......+ ....+..........+||+|++..
T Consensus 97 ~~~k-f~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P 170 (390)
T 1kij_A 97 SGGK-FEQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP 170 (390)
T ss_dssp EESG-GGG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE
T ss_pred eccc-ccC----ccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEE
Confidence 3332 311 11122468999999999999999999999754 4444333332 122333221110146899999962
Q ss_pred ccccccc----ccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 254 RDEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 254 k~~~~e~----l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
+...| .+...|.+.++.++-.- ..-|.+.
T Consensus 171 --d~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~ 204 (390)
T 1kij_A 171 --DPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQ 204 (390)
T ss_dssp --CHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred --ChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEE
Confidence 22212 35678999999887321 2444443
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.60 E-value=1.6e-08 Score=117.46 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=95.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCc---cEEEEEeCCCCCCHHHHHHHHHHHhcccch
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK---KILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~---~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~ 178 (762)
...|+|||+||+||... ......|.|.+..++ ..|+|.|||.||+.+++...+.... +|.+
T Consensus 39 ~~Vl~ELV~NAIDa~~~---------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~-atsk 102 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE---------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLL-YGSR 102 (621)
T ss_dssp HHHHHHHHHHHHHHHTT---------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCC-CC--
T ss_pred HHHHHHHHHHHHHHHhh---------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhc-cCCc
Confidence 34678999999999741 111224555444333 5799999999999999987554332 2211
Q ss_pred hHHHhhhccCCCCccccccccceeeeeeccE-----EEEEEeeCCC-eeeEEEE-----cCCCceE-EEeCCCCCCCCCC
Q 004309 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDD-KQYVWES-----KADGAFA-ISEDTWNEPLGRG 246 (762)
Q Consensus 179 ~f~~~~~~~~~~~~IGqFGIGFyS~FmVadk-----V~V~Sk~~~~-~~~~W~s-----~~~~~f~-I~~~~~~~~~~~G 246 (762)
|. ......|..|+|++++..+++. ++|.|+..++ .++.+.- .+.+... ....+ ....+|
T Consensus 103 -f~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~~G 173 (621)
T 2q2e_B 103 -FH------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRPHG 173 (621)
T ss_dssp -CC------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCSSC
T ss_pred -cc------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc--CCCCCC
Confidence 21 0112348999999999999887 5999987643 5666653 3333331 12211 234689
Q ss_pred eEEEEEeccccccccc--HHHHHHHHHHHcCCC-CcceEEe
Q 004309 247 TEIRLHLRDEAGEYLE--ESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 247 T~I~L~Lk~~~~e~l~--~~~l~~likkys~fi-~~PI~l~ 284 (762)
|+|++.++.+ |.. ...|.++++.|+-.- ..-|.+.
T Consensus 174 T~V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~ 211 (621)
T 2q2e_B 174 TQIELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLI 211 (621)
T ss_dssp CCEEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEEC
T ss_pred CEEEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 9999998743 333 256778888876432 2444443
No 33
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.59 E-value=1.3e-07 Score=104.40 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=98.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH--------HHHHHHHHh
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~LgtIa 173 (762)
...+.|||.||+||.-. +. .-.|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~--a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lh 95 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GH--AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TC--CSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhc--------------CC--CCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeec
Confidence 56889999999999631 11 23677777655 4899999999999888 555565533
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCC-ceEEEeCCCCCCCCCCeEEEEE
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADG-AFAISEDTWNEPLGRGTEIRLH 252 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L~ 252 (762)
.+|+ |-. ..-...-|..|+|..++-.++.+++|+|+..+ ..|.....++. .-.+..........+||+|+..
T Consensus 96 agsK--f~~----~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~ 168 (390)
T 1s16_A 96 AGGK--FSN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 168 (390)
T ss_dssp EESC--SSS----SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred ccCC--cCC----CcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCCCceEEEEE
Confidence 3333 210 11112468899999999999999999998743 44544333321 1112221111112689999987
Q ss_pred eccccccc----ccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 253 LRDEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 253 Lk~~~~e~----l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
. +..-| .+...|.+.++.++-.. ..-|.+.
T Consensus 169 P--d~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 203 (390)
T 1s16_A 169 P--DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 (390)
T ss_dssp E--CGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred E--CccccCcccccHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22222 36688999999887432 3445554
No 34
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.43 E-value=3.3e-07 Score=101.16 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=97.6
Q ss_pred CchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH--------HHHHHHH
Q 004309 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGT 171 (762)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~Lgt 171 (762)
.+...+.|||.||+||.-. + .--.|.|.++.++ .|+|.|||.||+.++ +.-.|+.
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g--~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~elv~~~ 96 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------G--HCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 96 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------T--CCCEEEEEECTTS-CEEEEECSSCCCCSBCTTTSSBHHHHHHHS
T ss_pred CHHHHHHHHHHhHHHHHhc--------------C--CCCEEEEEEeCCC-EEEEEECCCCcccCcccccCcchHHHhhee
Confidence 3456789999999999631 1 1236777777654 899999999999887 3334553
Q ss_pred HhcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC---CceEEEeCCCCCCCCCCeE
Q 004309 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFAISEDTWNEPLGRGTE 248 (762)
Q Consensus 172 Ia~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~---~~f~I~~~~~~~~~~~GT~ 248 (762)
.-.+|+ |- ...-.-.-|..|+|.-|+=.++.+++|+|+..+ ..|...-.++ ....+.. ....+||+
T Consensus 97 lhagsK--f~----~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~ 165 (391)
T 1ei1_A 97 LHAGGK--FD----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTM 165 (391)
T ss_dssp TTEESC--SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEE
T ss_pred ccccCC--cC----CCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccE
Confidence 433333 21 011112468899999999999999999998743 4443333322 1112211 12368999
Q ss_pred EEEEecccc--c-ccccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 249 IRLHLRDEA--G-EYLEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 249 I~L~Lk~~~--~-e~l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
|+..-...- . .-.+...|...++.++=.. ..-|.+.
T Consensus 166 V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~ 205 (391)
T 1ei1_A 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR 205 (391)
T ss_dssp EEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE
Confidence 998722211 1 1235678888888886432 3455554
No 35
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.37 E-value=7.1e-07 Score=98.76 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=90.0
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH--------HHHHHHHHhc
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIAK 174 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~LgtIa~ 174 (762)
..+.|||.||+||.. + + + .--.|.|.++.++..|+|.|||.||+.++ +.-.|++.-.
T Consensus 55 ~lv~EivdNsiDe~~--~-----~------g--~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lha 119 (400)
T 1zxm_A 55 KIFDEILVNAADNKQ--R-----D------P--KMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 119 (400)
T ss_dssp HHHHHHHHHHHHHHH--H-----C------T--TCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSE
T ss_pred HHHHHHHhhHHhHHh--h-----c------C--CCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeecc
Confidence 367899999999963 1 1 1 12357777776657999999999999876 3434543333
Q ss_pred ccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeeeEEEEcCCCc-eEEEeCCCCCCCCCCeEEEEE
Q 004309 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLH 252 (762)
Q Consensus 175 Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L~ 252 (762)
+|+ |-.. .-.-.-|..|+|.-++=.++.+++|+++.. ++..|...-..+.. -.+..... ....+||+|+..
T Consensus 120 gsK--f~~~----~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F~ 192 (400)
T 1zxm_A 120 SSN--YDDD----EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITFQ 192 (400)
T ss_dssp ESC--CCGG----GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEEE
T ss_pred cCC--CCCC----cccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEEE
Confidence 333 2111 111256999999999999999999999874 34445333322211 11111100 113579999988
Q ss_pred ecccc---cccccHHH---HHHHHHHHc
Q 004309 253 LRDEA---GEYLEESK---LKELVKKYS 274 (762)
Q Consensus 253 Lk~~~---~e~l~~~~---l~~likkys 274 (762)
....- .+| +.+. |.+.++.++
T Consensus 193 Pd~~iF~~~ef-~~~~~~~l~~rlrelA 219 (400)
T 1zxm_A 193 PDLSKFKMQSL-DKDIVALMVRRAYDIA 219 (400)
T ss_dssp ECGGGGTCSSC-CHHHHHHHHHHHHHHH
T ss_pred EChHHhCceee-cHHHHHHHHHHHHHHH
Confidence 33221 222 4445 556777665
No 36
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.36 E-value=5.9e-07 Score=91.90 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=91.1
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHH-------HHH-HHHH
Q 004309 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (762)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL-------~~~-LgtI 172 (762)
+...++|||.||.||... +.. -.|.|.++.+ ..|+|.|||.||+.+.. .+. |++.
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~--~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~l 98 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHC--KEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCC--CEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCC--CEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeec
Confidence 356789999999999642 112 3577777654 58999999999998763 222 3333
Q ss_pred hcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC---CceEEEeCCCCCCCCCCeEE
Q 004309 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFAISEDTWNEPLGRGTEI 249 (762)
Q Consensus 173 a~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~---~~f~I~~~~~~~~~~~GT~I 249 (762)
-.+|+ |-. ..-...-|..|+|.-++=.++.+++|+++..+ ..|......+ ....+.. ....+||+|
T Consensus 99 hag~K--fd~----~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~g----~~~~~GT~V 167 (220)
T 4duh_A 99 HAGGK--FDD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMV 167 (220)
T ss_dssp TCSSC--CCT----TC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEEE----ECSCCEEEE
T ss_pred ccCCC--cCC----CccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceecc----ccCCCCcEE
Confidence 33332 211 11123469999999999999999999998754 3332222222 1111111 124689999
Q ss_pred EEEecccc---cccccHHHHHHHHHHHcCCCC--cceEEee
Q 004309 250 RLHLRDEA---GEYLEESKLKELVKKYSEFIN--FPIYIWA 285 (762)
Q Consensus 250 ~L~Lk~~~---~e~l~~~~l~~likkys~fi~--~PI~l~~ 285 (762)
+..-...- ..-++.+.|...++.++ |++ .-|.++.
T Consensus 168 ~F~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 168 RFWPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp EEEECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred EEEECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 98633221 10235578888888887 553 4555543
No 37
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.36 E-value=1e-06 Score=96.54 Aligned_cols=151 Identities=9% Similarity=0.117 Sum_probs=89.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
...++|||.||+||... +. --.|.|.++.++ .|+|+|||.||+. |+. |...| +|+ |-
T Consensus 32 ~~~v~ElvdNsiDe~~~--------------g~--a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v--~~lha-gsK--f~ 88 (369)
T 3cwv_A 32 HHLVYFLLDVAYEEARR--------------GE--CRDVVLEVGGDG-SIALFCTSRTVTA-ENL--VRVAT-GAG--FL 88 (369)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TC--CSEEEEEECTTS-CEEEEEEESSCCH-HHH--HHHHT-TTT--GG
T ss_pred HHHHHHHHhhhHhHHhh--------------CC--CCEEEEEEeCCC-EEEEEECCCCcCH-hHe--eeeec-CCC--cC
Confidence 45788999999999631 11 236777776554 8999999999999 554 22223 222 21
Q ss_pred HhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCce-----EEEeC-CCCCCCCCCeEEEEEecc
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-----AISED-TWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f-----~I~~~-~~~~~~~~GT~I~L~Lk~ 255 (762)
.....+..+.-| |.-|+-.++.+++|+|+..+ ..|.....+ |.- ...+. +.+....+||+|+.. +
T Consensus 89 ----~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~-G~~~~~~~~~~~l~~~g~~~~~GT~V~f~--P 159 (369)
T 3cwv_A 89 ----GRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEH-GHPQGEGAAVTPMEPMPVSAERGVRVHFV--P 159 (369)
T ss_dssp ----GSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEET-TEECTTCEEESSCCCCSSCCSEEEEEEEE--E
T ss_pred ----CCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeC-CcccccccccCCceEecccCCCCCEEEEE--E
Confidence 100001122224 87778888899999999753 455444333 221 02211 112224789999987 2
Q ss_pred ccccc----ccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 256 EAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 256 ~~~e~----l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
+..-| .+...|.+.++.++-.- ..-|.+.
T Consensus 160 d~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 193 (369)
T 3cwv_A 160 DATIFEVLAFDRARLSRRCNELAALAPGLRVSFA 193 (369)
T ss_dssp CTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEE
Confidence 22223 46688999999987322 3445553
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.30 E-value=2.2e-06 Score=88.02 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=92.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH-------HHHHHHHHhcc
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED-------LIKNLGTIAKS 175 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee-------L~~~LgtIa~S 175 (762)
..++|+|.||+|+... +. ...|.|.++.+ ..|+|.|||.||+.++ +.-.|++.-.+
T Consensus 43 ~~v~Eiv~NaiD~~~~--------------g~--~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag 105 (226)
T 4emv_A 43 HLVWEIVDNAVDEALS--------------GF--GDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAG 105 (226)
T ss_dssp HHHHHHHHHHHHHHHT--------------TC--CSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--
T ss_pred HHHHHHHHHHHHHHhc--------------CC--CcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeeccc
Confidence 4568999999999631 11 23677777664 4899999999999987 43334333333
Q ss_pred cchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC----CceE-EEeCCCCCCCCCCeEEE
Q 004309 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD----GAFA-ISEDTWNEPLGRGTEIR 250 (762)
Q Consensus 176 g~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~----~~f~-I~~~~~~~~~~~GT~I~ 250 (762)
|+ |-.. .-...-|..|+|.-++=.++.+++|+++..+ ..|......+ .... +.+. .....||+|+
T Consensus 106 ~K--fd~~----~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V~ 175 (226)
T 4emv_A 106 GK--FGQG----GYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKVT 175 (226)
T ss_dssp ------------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEEE
T ss_pred Cc--cCcc----ceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEEE
Confidence 33 3211 1123469999999999999999999998754 4343222222 1112 2221 1246899999
Q ss_pred EEecccc--cccccHHHHHHHHHHHcCCC--CcceEEee
Q 004309 251 LHLRDEA--GEYLEESKLKELVKKYSEFI--NFPIYIWA 285 (762)
Q Consensus 251 L~Lk~~~--~e~l~~~~l~~likkys~fi--~~PI~l~~ 285 (762)
......- ..-++.+.|...++.++ |+ ..-|.++.
T Consensus 176 F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 213 (226)
T 4emv_A 176 FMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTD 213 (226)
T ss_dssp EEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEE
T ss_pred EEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 8633221 11236678888888887 54 45566654
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.04 E-value=8.8e-06 Score=90.14 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=86.6
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHH-------HHH-HHHH
Q 004309 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (762)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL-------~~~-LgtI 172 (762)
+...+.|+|.||+|+.- + +.. -.|.|.++.+ ..|+|.|||.||+.+.. .+. |+..
T Consensus 51 ~~hlv~EivdNsiDea~--a------------g~~--~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~l 113 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEAL--A------------GHA--KQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRL 113 (408)
T ss_dssp THHHHHHHHHHHHHHHH--T------------TSC--CEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHhh--c------------CCC--ceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEec
Confidence 36688999999999953 1 212 3577777654 58999999999998762 233 3333
Q ss_pred hcccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC---CceE-EEeCCCCCCCCCCeE
Q 004309 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFA-ISEDTWNEPLGRGTE 248 (762)
Q Consensus 173 a~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~---~~f~-I~~~~~~~~~~~GT~ 248 (762)
-.+|+ |-.. .-.-.-|..|+|.-++=.++.+++|+++..+ ..|......+ .... +... .....||+
T Consensus 114 haggK--fd~~----~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~~---~~~~~GT~ 183 (408)
T 3lnu_A 114 HAGGK--FNNR----NYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGTV---GKKNTGTR 183 (408)
T ss_dssp --------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEEC---CTTCCEEE
T ss_pred ccCCC--cCCC----ceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEeccC---cCCCCCcE
Confidence 33333 3211 1113458999999999999999999998754 3343222221 1112 2221 12368999
Q ss_pred EEEEecccc--cccccHHHHHHHHHHHcCCC-CcceEEe
Q 004309 249 IRLHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIW 284 (762)
Q Consensus 249 I~L~Lk~~~--~e~l~~~~l~~likkys~fi-~~PI~l~ 284 (762)
|+..-...- ..-++.+.|...++.++=.. ..-|.+.
T Consensus 184 V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~ 222 (408)
T 3lnu_A 184 LRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLH 222 (408)
T ss_dssp EEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 998633221 11136678888888876322 3455554
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.87 E-value=2.7e-05 Score=78.31 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=82.0
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
...++|||.||.|+.-. +. .-.|.|.++.+ ..|+|.|||.||+.+ ..+.|+....
T Consensus 33 ~~~v~Elv~NsiD~~~a--------------g~--~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~- 87 (198)
T 3ttz_A 33 HHLVWEIVDNSIDEALA--------------GY--ANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV- 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TS--CCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-
T ss_pred HHHHHHHHHHHHhHHhc--------------CC--CcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-
Confidence 55778999999998531 11 23566666654 499999999999986 3344543321
Q ss_pred HhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCC-CceEEEeCCCCCCCCCCeEEEEEeccccccc
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHLRDEAGEY 260 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~-~~f~I~~~~~~~~~~~GT~I~L~Lk~~~~e~ 260 (762)
+.+ |+ .-++=.++.+++|+|+..+ ..|......+ ....+... +....+||+|+.. ++..-|
T Consensus 88 e~i-----------~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i--~~~~~~GT~V~F~--Pd~~iF 149 (198)
T 3ttz_A 88 EVI-----------LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV--GTTDKTGTVIRFK--ADGEIF 149 (198)
T ss_dssp HHH-----------HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE--EECSCCEEEEEEE--ECTTTC
T ss_pred ccc-----------ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec--cCCCCCCcEEEEE--ECHHHh
Confidence 111 22 2222345689999998754 4443332222 11111111 1124689999987 333333
Q ss_pred -----ccHHHHHHHHHHHcCCCC--cceEEee
Q 004309 261 -----LEESKLKELVKKYSEFIN--FPIYIWA 285 (762)
Q Consensus 261 -----l~~~~l~~likkys~fi~--~PI~l~~ 285 (762)
.+.+.|.+.++.++ |++ .-|.++.
T Consensus 150 ~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 180 (198)
T 3ttz_A 150 TETTVYNYETLQQRIRELA-FLNKGIQITLRD 180 (198)
T ss_dssp CSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEE
T ss_pred ccCCccCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 46688999999987 554 4555543
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.62 E-value=9.2e-05 Score=82.35 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=79.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHHhcc
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKS 175 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~LgtIa~S 175 (762)
.+.|+|.||+|+... ++ .--.|.|.++.++..|+|.|||.||+.+.... .|+++-.+
T Consensus 68 lv~EivdNaiDe~~~-------~g--------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaG 132 (418)
T 1pvg_A 68 IFDEILVNAADNKVR-------DP--------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 132 (418)
T ss_dssp HHHHHHHHHHHHHHH-------CT--------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred HHHHHHhCHHHHHHh-------cC--------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecc
Confidence 567999999999731 11 12367888877768999999999998765221 24444334
Q ss_pred cchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeee--EEEEc---CCCceEEEeCCCCCCCCCCeEE
Q 004309 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESK---ADGAFAISEDTWNEPLGRGTEI 249 (762)
Q Consensus 176 g~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~--~W~s~---~~~~f~I~~~~~~~~~~~GT~I 249 (762)
|+ |-. +.-.-.-|..|||.-.+=.++.+++|+++.. ++..| .|+.. .... .+... ....+||+|
T Consensus 133 gK--fd~----~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~V 202 (418)
T 1pvg_A 133 SN--YDD----DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTKV 202 (418)
T ss_dssp SC--CCT----TSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEEE
T ss_pred cc--cCC----CceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceEE
Confidence 43 210 1111235999999988888999999999863 44444 44422 0112 23332 123689999
Q ss_pred EEEecc
Q 004309 250 RLHLRD 255 (762)
Q Consensus 250 ~L~Lk~ 255 (762)
+.....
T Consensus 203 ~F~PD~ 208 (418)
T 1pvg_A 203 TFKPDL 208 (418)
T ss_dssp EEEECG
T ss_pred EEEECh
Confidence 987543
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.30 E-value=0.00016 Score=66.96 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.|.+||.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++...+....++.+
T Consensus 50 il~nLl~NA~~~~~-----------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~------ 106 (150)
T 1ysr_A 50 AVDNAIANAVKHGG-----------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST------ 106 (150)
T ss_dssp HHHHHHHHHHHTTC-----------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC----------
T ss_pred HHHHHHHHHHhcCC-----------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC------
Confidence 46689999988731 1245566655656667999999999999988764422111100
Q ss_pred hhccCCCCccccccccceeeeeec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
..-+..|+|++-+-.++
T Consensus 107 -------~~~~g~GlGL~i~~~~~ 123 (150)
T 1ysr_A 107 -------ASHSGSGLGLALVAQQA 123 (150)
T ss_dssp --------------CCCHHHHHHH
T ss_pred -------CCCCCCCcCHHHHHHHH
Confidence 11245789988766554
No 43
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.26 E-value=0.00014 Score=73.64 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=46.7
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+. -..+
T Consensus 158 ~il~nLl~NA~~~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~-~~~~------- 213 (268)
T 4ew8_A 158 QTLDHLVENALRQTP----------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFD-RFVG------- 213 (268)
T ss_dssp HHHHHHHHHHHHHSC----------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTS-TTCC-------
T ss_pred HHHHHHHHHHHHhCC----------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHH-HHhc-------
Confidence 467889999988742 1234556665555556799999999999987764221 1111
Q ss_pred hhhccCCCCccccccccceeeeeec
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
..-+..|+|++.+-.++
T Consensus 214 --------~~~~g~GlGL~i~~~~~ 230 (268)
T 4ew8_A 214 --------RDRGGPGLGLALVKALV 230 (268)
T ss_dssp --------CSSCCCTTHHHHHHHHH
T ss_pred --------CCCCCCcccHHHHHHHH
Confidence 11256799987765553
No 44
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.22 E-value=0.00011 Score=67.86 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=59.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+ ....+
T Consensus 47 ~il~nLl~NAi~~~~------------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f----~~~~~---- 100 (152)
T 1id0_A 47 EVMGNVLDNACKYCL------------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIF----DRGQR---- 100 (152)
T ss_dssp HHHHHHHHHHHHHCS------------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGG----SCCCC----
T ss_pred HHHHHHHHHHHHhCc------------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHh----cccee----
Confidence 356689999988842 1345666556556679999999999988776422 11110
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
....-+..|+|++.+-.+++.. +|.+.+... .+.||++++.+.-
T Consensus 101 ------~~~~~~g~GlGL~i~~~~~~~~------------------gG~i~~~~~-----~~~G~~~~i~lP~ 144 (152)
T 1id0_A 101 ------VDTLRPGQGVGLAVAREITEQY------------------EGKIVAGES-----MLGGARMEVIFGR 144 (152)
T ss_dssp ------TTCCCTTCCSCHHHHHHHHHHT------------------TCEEEEEEC-----TTSSEEEEEEECC
T ss_pred ------ccCCCCCcccCHHHHHHHHHHc------------------CCEEEEEeC-----CCCcEEEEEEEec
Confidence 0011256899987665543211 234445432 2458888888754
No 45
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.20 E-value=0.00025 Score=65.82 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=49.7
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.|||.||+.+... . .....+.|.+..+.+.-.|+|.|||.||+ ++...+ ....+
T Consensus 42 ~il~~l~~Nai~h~~~-------~------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~----~~~~~---- 98 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYN-------N------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEAR----QPLFT---- 98 (145)
T ss_dssp HHHHHHHHHHHHTTST-------T------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHT----CCC------
T ss_pred HHHHHHHHHHHHHhcC-------C------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhh----ccccc----
Confidence 3578999999887421 0 11234556665665556799999999999 444322 11110
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEe
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK 215 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk 215 (762)
.. ...+..|+|++-+-.+++++.+.+.
T Consensus 99 ----~~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 99 ----TK--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp -----------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred ----CC--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 00 1124579999888777775555443
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.20 E-value=8.2e-05 Score=72.70 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=45.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||+||+.+.. ....|.|.+.... |+|.|||.||+.+++...+.... ++.
T Consensus 120 ~il~nLl~NAi~~~~------------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~-~~~----- 173 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP------------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFY-RPP----- 173 (222)
T ss_dssp HHHHHHHHHHHHTCC------------------TTCEEEEEECSSE--EEEECSCC------------------------
T ss_pred HHHHHHHHHHHHcCC------------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhc-cCC-----
Confidence 366789999988732 1124666655443 99999999999998776442211 111
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
....+..|+|++-|-.++.. + +|.+.+.. ..+.||+|++.+-.
T Consensus 174 -------~~~~~g~GlGL~i~~~i~~~------~------------gG~i~i~s-----~~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 174 -------GQTATGSGLGLSIVQRIAKL------H------------GMNVEFGN-----AEQGGFEAKVSWLE 216 (222)
T ss_dssp ---------------CTHHHHHHHHHH------T------------TCEEECCB-----CTTSSBEEEEECCC
T ss_pred -------CCCCCcccccHHHHHHHHHH------c------------CCEEEEEc-----CCCCcEEEEEeecC
Confidence 01224679998866555322 1 23334433 23679999998764
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.19 E-value=0.00018 Score=71.39 Aligned_cols=74 Identities=26% Similarity=0.421 Sum_probs=47.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..++
T Consensus 126 ~il~nLl~NA~~~~~----------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~-~~~~------ 182 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP----------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEP-YFTT------ 182 (244)
T ss_dssp HHHHHHHHHHHHTCT----------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTST-TCCS------
T ss_pred HHHHHHHHHHHHhcc----------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcc-cccC------
Confidence 356788888888742 12345666666666667999999999999887653211 1111
Q ss_pred hhhccCCCCccccccccceeeeeec
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
.-.+..|+|++.|-.++
T Consensus 183 --------~~~~g~GlGL~i~~~i~ 199 (244)
T 3d36_A 183 --------KGVKGTGLGMMVVYRII 199 (244)
T ss_dssp --------SGGGCCSCHHHHHHHHH
T ss_pred --------CCCCCcchhHHHHHHHH
Confidence 11245799998776554
No 48
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.19 E-value=0.00028 Score=69.26 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=30.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL 165 (762)
.++|||+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+.+
T Consensus 134 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ-----------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC-----------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 57888888887631 1345666666666667999999999998765
No 49
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.18 E-value=0.00034 Score=76.28 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=62.6
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||.||+.|...-. ... ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|.. ..++...-
T Consensus 234 ~il~NLl~NAik~~~~~~-----~~~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~-f~~~~~~~-- 301 (394)
T 2btz_A 234 HMLFELFKNAMRATVESH-----ESS----LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSY-MYSTAPTP-- 301 (394)
T ss_dssp HHHHHHHHHHHHHHHHTT-----TTC----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCT-TTTCCC----
T ss_pred HHHHHHHHHHHHHhhhcc-----ccC----CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcc-cccCCCCC--
Confidence 356689999999976310 000 012345666655555567999999999999998864422 11111100
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
.. .......+.+|+|++-|-.+++. + +|...+... .+.||+++|+|..
T Consensus 302 ~~--~~~~~~~~G~GLGL~i~~~i~~~------~------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 302 QP--GTGGTPLAGFGYGLPISRLYAKY------F------------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp --------------CCHHHHHHHHHHH------T------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred Cc--ccCCCCCCCccCCHHHHHHHHHH------h------------CCEEEEEec-----CCCceEEEEEecC
Confidence 00 00122356789999776655421 1 234444432 2569999999864
No 50
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.18 E-value=0.00017 Score=69.61 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=35.4
Q ss_pred HHHHhhhcHHHHHHH---HHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 104 FLRELISNASDALDK---IRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 104 fLRELIqNA~DA~~k---~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
.|.+||+||..+... -|...-+ .....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~~-------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 110 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKGK-------PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 110 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHTS-------CSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccC-------CCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhh
Confidence 378999999998510 0000000 11233455555555556799999999999998743
No 51
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.10 E-value=0.00031 Score=76.72 Aligned_cols=117 Identities=25% Similarity=0.277 Sum_probs=67.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||.||+.|...-.- .. ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|.. ..++...-
T Consensus 233 ~il~NLl~NAik~~~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~-f~~~~~~~-- 300 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQE----NQ-----PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSY-TYSTAPTP-- 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TS-----SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTST-TCCSSCCC--
T ss_pred HHHHHHHHHHHHHHHhccc----cc-----CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCc-CccCCCCC--
Confidence 3567899999999863100 00 112345666655555567999999999999998864422 22211100
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
.+ +.......+.+|+|++-|-.+++. + +|...+... .+.||+++|.|..
T Consensus 301 ~~-~~~~~~~~~G~GLGL~i~~~i~~~------~------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 301 VM-DNSRNAPLAGFGYGLPISRLYAKY------F------------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp -------CCCSSCSSCHHHHHHHHHHH------T------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred Cc-CcCCCCCCCCcccCHHHHHHHHHH------h------------CCEEEEEec-----CCccEEEEEEeCC
Confidence 00 000122457789999876555421 1 234444432 2569999999864
No 52
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.08 E-value=0.00037 Score=76.40 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=66.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.|.+||.||+.|...-.- +. ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|.. ..++... ..
T Consensus 247 il~NLl~NAik~t~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~-f~~~~~~--~~ 314 (407)
T 2q8g_A 247 MVFELFKNAMRATMEHHA----NR-----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNY-MYSTAPR--PR 314 (407)
T ss_dssp HHHHHHHHHHHHHHHHST----TT-----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTTCCCC--CC
T ss_pred HHHHHHHHHHHHHhhccc----cC-----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCc-cccCCCC--CC
Confidence 567999999999863100 00 112345666655555567999999999999988753321 1111100 00
Q ss_pred hhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
. +.......|.+|+|++-|-.+++. + +|...+... .+.||+++|+|..
T Consensus 315 ~-~~~~~~~~~G~GLGL~Ivr~i~~~------~------------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 315 V-ETSRAVPLAGFGYGLPISRLYAQY------F------------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp S-SCCSCCCSSCTTCHHHHHHHHHHH------T------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred c-cccCCCCCCCcCCCHHHHHHHHHH------h------------CCEEEEEEc-----CCCceEEEEEECC
Confidence 0 000123457789999766555321 1 234444432 2569999999864
No 53
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.99 E-value=0.00011 Score=70.26 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=58.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC--ccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE--KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~--~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~ 181 (762)
.|.+||.||..+.. ....+.|.|..... .-.|+|.|||.||+.+++...+.. ..++..
T Consensus 47 il~nLl~NAi~~~~----------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~-~~~~~~--- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSP----------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDR-FYRVDK--- 106 (177)
T ss_dssp HHHHHHHHHHHTCC----------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTST-TCCCC----
T ss_pred HHHHHHHHHHHhCC----------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhh-hccCCC---
Confidence 56789999998742 12345566644433 346899999999998877643321 111110
Q ss_pred HhhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEec
Q 004309 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (762)
Q Consensus 182 ~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (762)
......+..|+|++.+-.+++. . +|.+.+... .+.||++++.|.
T Consensus 107 ------~~~~~~~g~GlGL~iv~~~~~~------~------------~G~i~i~~~-----~~~Gt~~~i~lP 150 (177)
T 3sl2_A 107 ------ARTRKLGGTGLGLAIAKEMVQA------H------------GGDIWADSI-----EGKGTTITFTLP 150 (177)
T ss_dssp -----------CCCCCCHHHHHHHHHHH------T------------TCCEEEEEE-----TTTEEEEEEEEE
T ss_pred ------CCCCCCCCCCcCHHHHHHHHHH------c------------CCEEEEEec-----CCCCeEEEEEEe
Confidence 0112235789999866555321 1 234455432 245899888865
No 54
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.99 E-value=0.0003 Score=77.60 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=64.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~ 182 (762)
..|.+||.||+.|...-.-. .+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|.. ..++... .
T Consensus 256 ~vl~NLl~NAik~~~~~~~~---~~-----~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~-f~~~~~~--~ 324 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYED---RK-----EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNY-MYSTAPR--P 324 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---CS-----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTC-------
T ss_pred HHHHHHHHHHHHHHHhhccc---cC-----CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCc-ccccCCC--C
Confidence 35668999999998642100 00 012345666655555567999999999999998754321 1111110 0
Q ss_pred hhhccCCCCccccccccceeeeeeccEEEEEEeeCCCeeeEEEEcCCCceEEEeCCCCCCCCCCeEEEEEecc
Q 004309 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (762)
Q Consensus 183 ~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (762)
.+. .......+.+|+|++-|-.+++. + +|...+... .+.||+++|+|..
T Consensus 325 ~~~-~~~~~~~~G~GLGL~I~k~iv~~------~------------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 325 SLE-PTRAAPLAGFGYGLPISRLYARY------F------------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp ---------CC--CTTHHHHHHHHHHH------T------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred Ccc-ccCCCCcCCeecCHHHHHHHHHH------h------------CCEEEEEec-----CCCCEEEEEEecC
Confidence 000 00122356789999776555421 1 234445432 2569999999864
No 55
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.82 E-value=0.00029 Score=76.64 Aligned_cols=58 Identities=29% Similarity=0.354 Sum_probs=38.9
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
...|.+||.||+.|...- ... +....+.+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 240 ~~il~NLl~NAik~~~~~------~~~--~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~ 297 (388)
T 1gkz_A 240 DYILPELLKNAMRATMES------HLD--TPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR 297 (388)
T ss_dssp HHHHHHHHHHHHHHHHHT------CTT--CTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT
T ss_pred HHHHHHHHHHHHHHhhcc------ccC--CCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH
Confidence 357889999999998631 000 0011234566665555556799999999999988765
No 56
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.81 E-value=0.00026 Score=66.48 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f~~~ 183 (762)
.|.+||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..++.
T Consensus 51 il~nll~NAik~~------------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~-f~~~~------ 105 (161)
T 1bxd_A 51 AVANMVVNAARYG------------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQP-FVRGD------ 105 (161)
T ss_dssp HHHHHHHHHHTTC------------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCC-CCCCS------
T ss_pred HHHHHHHHHHhhc------------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCC-ceeCC------
Confidence 5568999997652 1345666666666667999999999998876542211 11111
Q ss_pred hhccCCCCccccccccceeeeeec
Q 004309 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 184 ~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
...-.+..|+|++-|-.++
T Consensus 106 -----~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 106 -----SARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp -----CCCCCCCCSCCCCTTHHHH
T ss_pred -----CCCCCCCcccCHHHHHHHH
Confidence 1111256899998776554
No 57
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.71 E-value=0.00036 Score=62.86 Aligned_cols=43 Identities=30% Similarity=0.506 Sum_probs=31.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee 164 (762)
.++|||+||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~~-----------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHAA-----------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCSS-----------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhCC-----------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 57789999987731 1345666666666 7799999999998654
No 58
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.58 E-value=0.0021 Score=70.01 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=35.0
Q ss_pred HHHhhhcHHHHH----HHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 105 LRELISNASDAL----DKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 105 LRELIqNA~DA~----~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
|.+||.||.|+. +.++. . |......+.|.+..+.+.-.|+|.|||.||+.+.+.+
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~-~-------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 169 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIA-K-------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 169 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHH-T-------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHh-c-------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHH
Confidence 889999999996 11111 0 0011233444444444445699999999999998743
No 59
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0072 Score=74.97 Aligned_cols=144 Identities=15% Similarity=0.225 Sum_probs=79.3
Q ss_pred HHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH-------HHHH-HHHHhc
Q 004309 104 FLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED-------LIKN-LGTIAK 174 (762)
Q Consensus 104 fLRELIqNA~D-A~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee-------L~~~-LgtIa~ 174 (762)
.+-|.|.||+| |++ +. ..-.|.|+++.+++.|+|.|||-||+-+. ..+. |++.-.
T Consensus 63 l~~EildNsiDea~a---------------g~-~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhA 126 (1177)
T 4gfh_A 63 IFDEILVNAADNKVR---------------DP-SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 126 (1177)
T ss_dssp HHHHHHHHHHHHHHH---------------CT-TCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred EeeEEEEChHhHHhh---------------CC-CCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeecccccc
Confidence 45699999999 443 11 11268888887788999999999997531 1122 333333
Q ss_pred ccchhHHHhhhccCCCCccccccccceeeeeeccEEEEEEeeC-CCeee--EEEEcCC--CceEEEeCCCCCCCCCCeEE
Q 004309 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD--GAFAISEDTWNEPLGRGTEI 249 (762)
Q Consensus 175 Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVadkV~V~Sk~~-~~~~~--~W~s~~~--~~f~I~~~~~~~~~~~GT~I 249 (762)
+|+ |- .+.-.-.-|..|||.--+=.++.++.|.+... ++..| .|+.... +.-.+... .....||+|
T Consensus 127 GgK--Fd----~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~V 197 (1177)
T 4gfh_A 127 SSN--YD----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTKV 197 (1177)
T ss_dssp ESC--CC----CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEEE
T ss_pred ccC--cC----CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceEE
Confidence 333 21 01111235999999855555677766666532 33434 3432211 11123332 233579999
Q ss_pred EEEeccc---ccccccHHHHHHHHHHH
Q 004309 250 RLHLRDE---AGEYLEESKLKELVKKY 273 (762)
Q Consensus 250 ~L~Lk~~---~~e~l~~~~l~~likky 273 (762)
+-.-... ..+| +.+.+....++.
T Consensus 198 ~F~PD~~iF~~~~~-~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 198 TFKPDLTRFGMKEL-DNDILGVMRRRV 223 (1177)
T ss_dssp EEEECHHHHTCSSC-CHHHHHHHHHHH
T ss_pred EEEeCHHhcCCcEe-CHHHHHHHHHHH
Confidence 8764322 1223 556665555554
No 60
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.51 E-value=0.0012 Score=61.10 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=35.9
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC----------ccEEEEEeCCCCCCHHHHHHHHHHHh
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE----------KKILSIRDRGIGMTKEDLIKNLGTIA 173 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~----------~~~L~I~DNGiGMt~eeL~~~LgtIa 173 (762)
.|.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++...+.. .
T Consensus 52 il~nLl~NAik~~~~---------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~-~ 115 (160)
T 1r62_A 52 VLLNIVRNALQALGP---------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYP-M 115 (160)
T ss_dssp HHHHHHHHHHHHHGG---------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------
T ss_pred HHHHHHHHHHHHhhc---------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCc-c
Confidence 566899999988631 02234455544433 446899999999999988754321 1
Q ss_pred cccchhHHHhhhccCCCCccccccccceeeeeec
Q 004309 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 174 ~Sg~~~f~~~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
.++ . -+..|+|++.+-.++
T Consensus 116 ~~~------------~---~~g~GlGL~i~~~~~ 134 (160)
T 1r62_A 116 VSG------------R---EGGTGLGLSIARNLI 134 (160)
T ss_dssp -----------------------CHHHHHHHHHH
T ss_pred ccC------------C---CCCCccCHHHHHHHH
Confidence 110 0 145789987665553
No 61
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.47 E-value=0.00085 Score=61.67 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
.|.+||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 51 il~nll~NAi~~~~----------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 51 VLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp HHHHHHHHHHHHHC----------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG
T ss_pred HHHHHHHHHHHhcC----------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh
Confidence 45689999998852 1234555555555556799999999999887764
No 62
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.23 E-value=0.0013 Score=66.29 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=43.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEE--EeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhH
Q 004309 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIK--LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (762)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~--~d~~~~~L~I~DNGiGMt~eeL~~~LgtIa~Sg~~~f 180 (762)
..|..||+||..+.. ...+...|.|. .+.+.-.|+|.|||+||+.+++...|... .++..
T Consensus 141 ~il~NLl~NAik~~~---------------~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~-- 202 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSK---------------KDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQF-YRVDS-- 202 (258)
T ss_dssp HHHHHHHHHHHHTCC---------------TTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTT-CCCC---
T ss_pred HHHHHHHHHHHhcCc---------------CCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhcccc-ccCCC--
Confidence 356688999987742 11122344444 44444569999999999998876433211 11110
Q ss_pred HHhhhccCCCCccccccccceeeeeec
Q 004309 181 VEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (762)
Q Consensus 181 ~~~~~~~~~~~~IGqFGIGFyS~FmVa 207 (762)
....-.+..|+|++-|-.++
T Consensus 203 -------~~~~~~~G~GLGL~i~~~iv 222 (258)
T 2c2a_A 203 -------SLTYEVPGTGLGLAITKEIV 222 (258)
T ss_dssp ---------------CCCTHHHHHHHH
T ss_pred -------CCCCCCCCcchHHHHHHHHH
Confidence 00112245799998665553
No 63
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=95.93 E-value=0.0087 Score=54.19 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=32.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL 165 (762)
.++|||+||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHSQ-----------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHTC-----------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcCC-----------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 57899999987631 1345666666666667999999999986554
No 64
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.33 E-value=0.0089 Score=53.31 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=31.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee 164 (762)
.++||++||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 43 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHAN-----------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCTT-----------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 67789999976631 1345666666666 7799999999998765
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=94.03 E-value=0.026 Score=58.68 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Q 004309 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (762)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 167 (762)
.|.+||+||..|.. ....+.|.+..+.+.-.|+|.|||+||+.+++..
T Consensus 248 vl~nLl~NA~k~~~----------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTC----------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhcc----------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 57789999988741 1234566666665666799999999999887653
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=87.02 E-value=0.39 Score=48.53 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=29.6
Q ss_pred HHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCCccEEEEEeCCCC--CCHHHH
Q 004309 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIG--MTKEDL 165 (762)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiG--Mt~eeL 165 (762)
+.=||+||.+|.. ....+.|.+..+.+...|+|.|+|.| +..+.+
T Consensus 151 l~NLl~NA~~a~~----------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~ 197 (247)
T 4fpp_A 151 VLNIAQIAASALP----------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVL 197 (247)
T ss_dssp HHHHHHHHHTTCT----------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHH
T ss_pred HHHHHHHHHHhcC----------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHH
Confidence 4457888887742 12345666666666677999999977 554433
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=79.42 E-value=2.6 Score=45.88 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=31.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEeCC-ccEEEEEeCCCCCCHH
Q 004309 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKE 163 (762)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~e 163 (762)
...+.||+.||+.+.- +. .....+.|++..+.+ .-.|+|.|+|.|++..
T Consensus 299 ~l~v~El~~Nav~Ha~---------~~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 299 VHAISEFVENAVEHGY---------AT----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHBC---------CS----CCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHhcc---------cC----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 4688999999998841 00 123456666666533 4579999999999865
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=68.64 E-value=3.1 Score=41.23 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEe--CCccEEEEEeCCCCCCHHHHHHHH
Q 004309 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD--KEKKILSIRDRGIGMTKEDLIKNL 169 (762)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d--~~~~~L~I~DNGiGMt~eeL~~~L 169 (762)
+-.||.||.+|++.. . .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+.|
T Consensus 110 lgnLi~na~~Ai~~~----~-~~-----~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQA----V-SR-----ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHH----B-CT-----TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHHhh----h-cc-----CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 456999999998742 1 11 1234456666655 455679999999999987766533
Done!