BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004310
(762 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 303 bits (775), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/332 (49%), Positives = 218/332 (65%), Gaps = 8/332 (2%)
Query: 125 KGNIRVFCRCRPLNKAENANG--STSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPED 182
KGNIRV R RP+ K E+ G +T+ V FD+ ++ + ++ VF P+
Sbjct: 3 KGNIRVIARVRPVTK-EDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDK-VFSPQA 60
Query: 183 NQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSK 242
+Q+ VF + + +VTS +DG+NVCIFAYGQTG GKT+TMEGT EN G+N R L+ LF +
Sbjct: 61 SQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQ 120
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ-EVPGLTEAQVY 301
+ Y + VS E+YNE +RDLL +P +KLEI+ +G Q VPGLTE QV
Sbjct: 121 EKASDWEYTITVSAAEIYNEVLRDLL---GKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQ 177
Query: 302 GTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361
+++ ++ + G R+ TN NE SSRSH LL V+V+G + G +T L LVDLAG
Sbjct: 178 SVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAG 237
Query: 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDC 421
SERVGK +G RL+E+Q INKSLSALGDVI+AL S+ GH+P+RNSKLT++LQ SL GD
Sbjct: 238 SERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDS 297
Query: 422 KTLMFVQISPSSSDLGETLCSLNFASRVRGIE 453
KTLM VQ+SP + ETL SL FA RVR +E
Sbjct: 298 KTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 262 bits (669), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 220/367 (59%), Gaps = 9/367 (2%)
Query: 114 RKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXX 173
RK+ YN + ++KG IRV+CR RPLN+ E++ ++ + +E +
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQML----TTVDEFTVEHPWKDDKRKQ 56
Query: 174 XXY--VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNY 231
Y VF +Q+ +F TK +V S +DGYNVCIFAYGQTG+GKTFT+ G N G+
Sbjct: 57 HIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTP 116
Query: 232 RTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQE 291
R +ELF + K + + L M+E+Y + + DLL+ S + KLEIK+ ++G
Sbjct: 117 RATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSAR-RLKLEIKKDSKGMVF- 174
Query: 292 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTK 351
V +T + EE+ +L+ G+ R V TN NE SSRSH +L V ++ +L +
Sbjct: 175 VENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAAR 234
Query: 352 SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTH 411
L VDLAGSERV K G +LKE+Q INKSLSALGDVI AL+S + HIPYRN KLT
Sbjct: 235 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTM 294
Query: 412 ILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQ 471
++ SLGG+ KTLMFV +SP+ S+L ET SL +ASRVR I + P++ S E+ + K+
Sbjct: 295 LMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISS-KEMVRLKK 353
Query: 472 MAEKLKQ 478
+ K+
Sbjct: 354 LVAYWKE 360
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 219/376 (58%), Gaps = 19/376 (5%)
Query: 123 ELKGNIRVFCRCRPLNK----AENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVF 178
++KG IRV+CR RPL + A+ N SV EF ++ + VF
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEF------TVEHLWKDDKAKQHMYDRVF 55
Query: 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELF 238
Q+ VF TK +V S +DGYNVCIFAYGQTG+GKTFT+ G N G+ R + ELF
Sbjct: 56 DGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELF 115
Query: 239 RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-KLEIKQAAEGGTQEVPGLTE 297
R+ K + + L M+E+Y + + DLL+ Q + KL+IK+ ++G V +T
Sbjct: 116 RIMKKDSNKFSFSLKAYMVELYQDTLVDLLL--PKQAKRLKLDIKKDSKGMVS-VENVTV 172
Query: 298 AQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLV 357
+ EE+ +++ G+ R T NE SSRSH ++ V ++ NL + L V
Sbjct: 173 VSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFV 232
Query: 358 DLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSL 417
DLAGSERV K G +LKE+Q INKSLSALGDVISAL+S + HIPYRN KLT ++ SL
Sbjct: 233 DLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSL 292
Query: 418 GGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSD-----ISELFKYKQM 472
GG+ KTLMFV ISP+ S+L ET SL +ASRVR I + P++ S + +L Y +
Sbjct: 293 GGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKE 352
Query: 473 AEKLKQDEKETKKLQD 488
K D++E +++QD
Sbjct: 353 QAGRKGDDEELEEIQD 368
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 208/350 (59%), Gaps = 16/350 (4%)
Query: 114 RKQLYNEVIELKGNIRVFCRCRP-LNKAENANGS-TSVVEFDSS---QENELQIVXXXXX 168
R+ L+NE+ EL+GNIRV+CR RP L EN++ S +V EFD + Q E+ +
Sbjct: 2 RRTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQ 61
Query: 169 XXXXXXXYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRG 228
+F +D VF + +V S LDGYNVCIFAYGQTG+GKTFTM + G
Sbjct: 62 VHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--G 119
Query: 229 VNYRTLEELFR-VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-----KLEIK 282
+ T+ +F ++K + Y++ +E+YNE I DLL ++N K EI+
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 283 QAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGE 342
E T + +T ++ E V +LK ++RS ST +NE SSRSH + + + G
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 239
Query: 343 NLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKS 399
N G + L LVDLAGSER+ +V G+RL+E+Q INKSLS LGDVI AL S
Sbjct: 240 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 299
Query: 400 GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
HIP+RNSKLT++LQ SL GD KTLMFV ISPSSS + ETL SL FAS+V
Sbjct: 300 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 246 bits (628), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 231/410 (56%), Gaps = 33/410 (8%)
Query: 54 KIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSE 113
KIA L +I LK +L +K D+ G L+ + L+K++ V
Sbjct: 4 KIAALKEKIAALKEKIAALKEKIK----DTELGMKELNEI--------LIKEETV----- 46
Query: 114 RKQLYNEVIELKGNIRVFCRCRP-LNKAENANGS-TSVVEFDSS---QENELQIVXXXXX 168
R+ L+NE+ EL+GNIRV+ R RP L EN++ S +V EFD + Q E+ +
Sbjct: 47 RRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQ 106
Query: 169 XXXXXXXYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRG 228
+F +D VF + +V S LDGYNV IFAYGQTG+GKTFTM + G
Sbjct: 107 VHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--G 164
Query: 229 VNYRTLEELFR-VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-----KLEIK 282
+ T+ +F ++K + Y++ +E+YNE I DLL ++N K EI+
Sbjct: 165 IIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 224
Query: 283 QAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGE 342
E T + +T ++ E V +LK ++RS ST +NE SSRSH + + + G
Sbjct: 225 HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 284
Query: 343 NLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKS 399
N G + L LVDLAGSER+ +V G+RL+E+Q INKSLSALGDVI AL S
Sbjct: 285 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTK 344
Query: 400 GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
HIP+RNSKLT++LQ SL GD KTLMFV ISPSSS + ETL SL FAS+V
Sbjct: 345 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 209/362 (57%), Gaps = 15/362 (4%)
Query: 101 ELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVE-FDSSQENE 159
E +KK V S R+ L+NE+ EL+GNIRV+CR RP E+ N V+ FD ++
Sbjct: 3 EEIKKILVKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQ 62
Query: 160 -LQIVXXXXXXXXXXXXYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTF 218
+ I +F ++ + +F + ++ S LDGYNVCIFAYGQTG+GKT+
Sbjct: 63 GMTINRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTY 122
Query: 219 TMEGTPENRGVNYRTLEELFR-VSKHRNGIMRYELFVSMLEVYNEKIRDLL-------VE 270
TM + G+ T+ +F + K Y++ +E+YNE I DLL
Sbjct: 123 TMLNPGD--GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQEN 180
Query: 271 NSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSR 330
N K EI+ E T + +T + + V ++LK ++RS ST ANE SSR
Sbjct: 181 NDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSR 240
Query: 331 SHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGD 390
SH + + ++G+N G+K++ L LVDLAGSER+ V GERL+E+Q INKSLS LGD
Sbjct: 241 SHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGD 300
Query: 391 VISALASKSG---HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFAS 447
VI AL S G HIP+RNSKLT++LQ SL G KTLMFV ISP++ L ET+ SL FAS
Sbjct: 301 VIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
Query: 448 RV 449
+V
Sbjct: 361 KV 362
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 238 bits (607), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 208/368 (56%), Gaps = 17/368 (4%)
Query: 99 EHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRP-LNKAENANGSTSVVEFDSSQE 157
E E K++ + ERK+L+N V++L+GNIRVFCR RP L EN T +S+ E
Sbjct: 26 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 85
Query: 158 NELQIVXXXXXXXXXXXXY----VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTG 213
LQ + + VF P +Q +F P++ S LDGYN+CIFAYGQTG
Sbjct: 86 --LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTG 143
Query: 214 TGKTFTMEGTPENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272
+GKT+TM+G PE+ GV RT++ LF + +RN YE+ + LE+YNE + DLL S
Sbjct: 144 SGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---S 200
Query: 273 NQPSKKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRS 331
N+ K +EI+ A V +TE V + L+ + R+ ST NE SSRS
Sbjct: 201 NE-QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 259
Query: 332 HCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDV 391
H + ++ + G + + + + LVDLAGSE R+ E++ IN+SLS L +V
Sbjct: 260 HAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNV 315
Query: 392 ISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRG 451
I AL K HIPYRNSKLTH+L SLGG+ KTLMF+ +SP E++ SL FA+ V
Sbjct: 316 ILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 375
Query: 452 IESGPARK 459
+ A++
Sbjct: 376 CKMTKAKR 383
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 238 bits (607), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 208/368 (56%), Gaps = 17/368 (4%)
Query: 99 EHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRP-LNKAENANGSTSVVEFDSSQE 157
E E K++ + ERK+L+N V++L+GNIRVFCR RP L EN T +S+ E
Sbjct: 40 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 99
Query: 158 NELQIVXXXXXXXXXXXXY----VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTG 213
LQ + + VF P +Q +F P++ S LDGYN+CIFAYGQTG
Sbjct: 100 --LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTG 157
Query: 214 TGKTFTMEGTPENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272
+GKT+TM+G PE+ GV RT++ LF + +RN YE+ + LE+YNE + DLL S
Sbjct: 158 SGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---S 214
Query: 273 NQPSKKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRS 331
N+ K +EI+ A V +TE V + L+ + R+ ST NE SSRS
Sbjct: 215 NE-QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 273
Query: 332 HCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDV 391
H + ++ + G + + + + LVDLAGSE R+ E++ IN+SLS L +V
Sbjct: 274 HAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNV 329
Query: 392 ISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRG 451
I AL K HIPYRNSKLTH+L SLGG+ KTLMF+ +SP E++ SL FA+ V
Sbjct: 330 ILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 389
Query: 452 IESGPARK 459
+ A++
Sbjct: 390 CKMTKAKR 397
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/338 (44%), Positives = 198/338 (58%), Gaps = 16/338 (4%)
Query: 126 GNIRVFCRCRP-LNKAENANGS-TSVVEFDSS---QENELQIVXXXXXXXXXXXXYVFKP 180
GNIRV+CR RP L EN++ S +V EFD + Q E+ + +F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 181 EDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR- 239
+D VF + +V S LDGYNVCIFAYGQTG+GKTFTM + G+ T+ +F
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 119
Query: 240 VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-----KLEIKQAAEGGTQEVPG 294
++K + Y++ +E+YNE I DLL ++N K EI+ E T +
Sbjct: 120 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 179
Query: 295 LTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHL 354
+T ++ E V +LK ++RS ST +NE SSRSH + + + G N G + L
Sbjct: 180 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 239
Query: 355 WLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKSGHIPYRNSKLTH 411
LVDLAGSER+ +V G+RL+E+Q INKSLS LGDVI AL S HIP+RNSKLT+
Sbjct: 240 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 299
Query: 412 ILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
+LQ SL GD KTLMFV ISPSSS + ETL SL FAS+V
Sbjct: 300 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 199/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKGNIRVFCRCRP-LNKAENANGS-TSVVEFDSS---QENELQIVXXXXXXXXXXXXYVF 178
++GNIRV+CR RP L EN++ S +V EFD + Q E+ + +F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELF 238
+D VF + +V S LDGYNVCIFAYGQTG+GKTFTM + G+ T+ +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 118
Query: 239 R-VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-----KLEIKQAAEGGTQEV 292
++K + Y++ +E+YNE I DLL ++N K EI+ E T +
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 293 PGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKS 352
+T ++ E V +LK ++RS ST +NE SSRSH + + + G N G +
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 238
Query: 353 HLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKSGHIPYRNSKL 409
L LVDLAGS R+ +V G+RL+E+Q INKSLS LGDVI AL S HIP+RNSKL
Sbjct: 239 TLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 410 THILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
T++LQ SL GD KTLMFV ISPSSS + ETL SL FAS+V
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 199/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKGNIRVFCRCRP-LNKAENANGS-TSVVEFDSS---QENELQIVXXXXXXXXXXXXYVF 178
++GNIRV+CR RP L EN++ S +V EFD + Q E+ + +F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELF 238
+D VF + +V S LDGYNVCIFAYGQTG+GKTFTM + G+ T+ +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 118
Query: 239 R-VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-----KLEIKQAAEGGTQEV 292
++K + Y++ +E+YNE I DLL ++N K EI+ E T +
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 293 PGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKS 352
+T ++ E V +LK ++RS ST +NE SSRSH + + + G N G +
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 238
Query: 353 HLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKSGHIPYRNSKL 409
L LVDLAGSER+ +V G+RL+E+Q I KSLS LGDVI AL S HIP+RNSKL
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 410 THILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
T++LQ SL GD KTLMFV ISPSSS + ETL SL FAS+V
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 199/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKGNIRVFCRCRP-LNKAENANGS-TSVVEFDSS---QENELQIVXXXXXXXXXXXXYVF 178
++GNIRV+CR RP L EN++ S +V EFD + Q E+ + +F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELF 238
+D VF + +V S LDGYNVCIFAYGQTG+GKTFTM + G+ T+ +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 118
Query: 239 R-VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK-----KLEIKQAAEGGTQEV 292
++K + Y++ +E+YNE I DLL ++N K EI+ E T +
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 293 PGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKS 352
+T ++ E V +LK ++RS ST +NE SS SH + + + G N G +
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238
Query: 353 HLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKSGHIPYRNSKL 409
L LVDLAGSER+ +V G+RL+E+Q INKSLS LGDVI AL S HIP+RNSKL
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 410 THILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
T++LQ SL GD KTLMFV ISPSSS + ETL SL FAS+V
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 204/358 (56%), Gaps = 17/358 (4%)
Query: 99 EHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRP-LNKAENANGSTSVVEFDSSQE 157
E E K++ + ERK+L+N V++L+GNIRVFCR RP L EN T +S+ E
Sbjct: 29 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 88
Query: 158 NELQIVXXXXXXXXXXXXY----VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTG 213
LQ + + VF P +Q +F P++ S LDGYN+CIFAYGQ+G
Sbjct: 89 --LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSG 146
Query: 214 TGKTFTMEGTPENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272
+GKT+TM+G PE+ GV RT++ LF + +RN YE+ + LE+YNE + DLL S
Sbjct: 147 SGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---S 203
Query: 273 NQPSKKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRS 331
N+ K +EI+ A V +TE V + L+ + R+ ST NE SSRS
Sbjct: 204 NE-QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 262
Query: 332 HCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDV 391
H + ++ + G + + + + LVDLAGSE R+ E++ IN+SLS L +V
Sbjct: 263 HAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNV 318
Query: 392 ISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
I AL K HIPYRNSKLTH+L SLGG+ KTLMF+ +SP E++ SL FA+ V
Sbjct: 319 ILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 207/368 (56%), Gaps = 17/368 (4%)
Query: 99 EHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRP-LNKAENANGSTSVVEFDSSQE 157
E E K++ + ERK+L+N V++L+GNIRVFCR RP L EN T +S+ E
Sbjct: 29 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 88
Query: 158 NELQIVXXXXXXXXXXXXY----VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTG 213
LQ + + VF P +Q +F P++ S LDGYN+CIFAYGQTG
Sbjct: 89 --LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTG 146
Query: 214 TGKTFTMEGTPENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272
+GKT+TM+G PE+ GV RT++ LF + +RN YE+ + LE+YNE + DLL S
Sbjct: 147 SGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---S 203
Query: 273 NQPSKKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRS 331
N+ K +EI+ A V +TE V + L+ + R+ ST NE SSRS
Sbjct: 204 NE-QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 262
Query: 332 HCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDV 391
H + ++ + G + + + + LVDLAGSE R+ E++ I +SLS L +V
Sbjct: 263 HAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT----STRMTETKNIKRSLSELTNV 318
Query: 392 ISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRG 451
I AL K HIPYRNSKLTH+L SLGG+ KTLMF+ +SP E++ SL FA+ V
Sbjct: 319 ILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 378
Query: 452 IESGPARK 459
+ A++
Sbjct: 379 CKMTKAKR 386
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 235 bits (599), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 207/368 (56%), Gaps = 17/368 (4%)
Query: 99 EHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRP-LNKAENANGSTSVVEFDSSQE 157
E E K++ + ERK+L+N V++L+ NIRVFCR RP L EN T +S+ E
Sbjct: 32 ELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 91
Query: 158 NELQIVXXXXXXXXXXXXY----VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTG 213
LQ + + VF P +Q +F P++ S LDGYN+CIFAYGQTG
Sbjct: 92 --LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTG 149
Query: 214 TGKTFTMEGTPENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272
+GKT+TM+G PE+ GV RT++ LF + +RN YE+ + LE+YNE + DLL S
Sbjct: 150 SGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---S 206
Query: 273 NQPSKKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRS 331
N+ K +EI+ A V +TE V + L+ + R+ ST NE SSRS
Sbjct: 207 NE-QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 265
Query: 332 HCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDV 391
H + ++ + G + + + + LVDLAGSE R+ E++ IN+SLS L +V
Sbjct: 266 HAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNV 321
Query: 392 ISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRG 451
I AL K HIPYRNSKLTH+L SLGG+ KTLMF+ +SP E++ SL FA+ V
Sbjct: 322 ILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 381
Query: 452 IESGPARK 459
+ A++
Sbjct: 382 CKMTKAKR 389
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 201/354 (56%), Gaps = 39/354 (11%)
Query: 122 IELKGNIRVFCRCRP-------------LNKAENANGSTSVVEFDSSQENELQIVXXXXX 168
+ L+GNIRV+CR RP + K A G+ S+ + NE +I+
Sbjct: 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSL----TINRNEGRILSYNFQ 56
Query: 169 XXXXXXXYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRG 228
+F+P + +F + + +V S LDGYNVCIFAYGQTG+GKT+TM + G
Sbjct: 57 FDM-----IFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--G 109
Query: 229 VNYRTLEELFRVS---KHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQP-------SKK 278
+ TL +F+ + K R YE+ +E+YNE I DLL + + S+K
Sbjct: 110 MIPMTLSHIFKWTANLKERG--WNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQK 167
Query: 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVS 338
+I+ E + +T ++ T +V +LK +++RS +T +NE SSRSH + V
Sbjct: 168 HDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVH 227
Query: 339 VKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK 398
+ G NL G+ ++ L LVDLAGSER+ V GERL+E+Q INKSLS LGDVI AL +
Sbjct: 228 INGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTP 287
Query: 399 SG---HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
+IP+RNSKLT++LQ SL GD KTLMFV I P + + ETL SL FAS+V
Sbjct: 288 DAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 204/358 (56%), Gaps = 18/358 (5%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEA 186
+I+V R RP N+ E +G +V F Q + V VF Q
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTF---QGPDTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 187 VFA-QTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT----PENRGVNYRTLEELFRVS 241
+F KP V +L+GYN +FAYGQTG GK++TM GT P+ RGV R +E++F
Sbjct: 64 IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 123
Query: 242 KHRNGIMRYELFVSMLEVYNEKIRDLLV-ENSNQPSKKLEIKQAAEGGTQEVPGLTEAQV 300
+ Y + VS +E+Y E+IRDLL +N N P + + G V GL E V
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLP-----VHEEKNRGVY-VKGLLEIYV 177
Query: 301 YGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLA 360
+EV+E+++ G R+V +TN N+ SSRSH + +++ +N+ G L+LVDLA
Sbjct: 178 SSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237
Query: 361 GSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGG 419
GSE+VGK G+ L+E++ INKSLSALG VI+AL KS H+PYR+SKLT ILQ SLGG
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG 297
Query: 420 DCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLK 477
+ +T + + SPSS + ETL +L F R + I++ A+ +++S + KQM K K
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN-KAKVNAELSPA-ELKQMLAKAK 353
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 213/366 (58%), Gaps = 36/366 (9%)
Query: 111 SSERKQLYNEVIELKGN---IRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXX 167
SS R+ LY +G+ +RV RCRP+N E A VV+ D + ++ +
Sbjct: 8 SSGRENLY-----FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDV-KLGQVSVKNPKG 61
Query: 168 XXXXXXXXYVFKPEDNQEA----VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222
+ F + A ++ +T +P+V SVL G+N IFAYGQTGTGKT+TMEG
Sbjct: 62 TAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG 121
Query: 223 T---PENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278
PE RGV + + +F +S+ +N +Y + S LE+Y E+IRDLL S +K+
Sbjct: 122 IRGDPEKRGVIPNSFDHIFTHISRSQN--QQYLVRASYLEIYQEEIRDLL---SKDQTKR 176
Query: 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVS 338
LE+K+ + G V L+ +E+ ++ G + RSVG+TN NE SSRSH + ++
Sbjct: 177 LELKERPDTGVY-VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVIT 235
Query: 339 VK-------GENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDV 391
++ GEN I K L LVDLAGSER K GERLKE+ IN SLSALG+V
Sbjct: 236 IECSEVGLDGENHIRVGK----LNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNV 291
Query: 392 ISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
ISAL KS HIPYR+SKLT +LQ SLGG+ KT+M + P+S ++ ETL +L +A+R +
Sbjct: 292 ISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAK 351
Query: 451 GIESGP 456
I++ P
Sbjct: 352 NIKNKP 357
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 206/360 (57%), Gaps = 22/360 (6%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEF-DSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEA 186
I+V CR RPLN +E GS VV+F ++ +EN + I VFKP +QE
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDK-----VFKPNASQEK 67
Query: 187 VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPEN---RGVNYRTLEELFRVSK 242
V+ + K +VT VL GYN IFAYGQT +GKT TMEG + +G+ R + ++F
Sbjct: 68 VYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIY 127
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVP---GLTEAQ 299
+ + + VS E+Y +KIRDLL SK + + VP G TE
Sbjct: 128 AMEVNLEFHIKVSYYEIYMDKIRDLL-----DVSK---VNLSVHEDKNRVPYVKGATERF 179
Query: 300 VYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDL 359
V E+V+E+++ G R + TN NE SSRSH + ++VK ENL N +K L+LVDL
Sbjct: 180 VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDL 239
Query: 360 AGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG-HIPYRNSKLTHILQSSLG 418
AGSE+V K +G L E++ INKSLSALG+VISALA + HIPYR+SKLT ILQ SLG
Sbjct: 240 AGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLG 299
Query: 419 GDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQ 478
G+ +T + + SP+S + ET +L+F R + +++ + +E +K + EK K
Sbjct: 300 GNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 191/354 (53%), Gaps = 28/354 (7%)
Query: 124 LKGNIRVFCRCRPLNKAEN-------------ANGSTSVVEFDSSQENELQIVXXXXXXX 170
LKGNIRVFCR RP+ E S S+ +E +
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 171 XXXXXY----VFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPEN 226
+ VF P Q+ VF + +V S LDGY VCIFAYGQTG+GKTFTMEG P
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 227 ----RGVNYRTLEELFRVSKHRNG-IMRYELFVSMLEVYNEKIRDLLVENSNQP-SKKLE 280
G+ R L LF V++ +G Y S +E+YNE +RDLL + + + E
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 281 IKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV 339
I++A G + V V +EV LL + R+V T NE SSRSH + ++ +
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 340 KGENLINGQKTKSHLWLVDLAGSERVGKIEVDG----ERLKESQFINKSLSALGDVISAL 395
GE+ G + + L LVDLAGSER+ G ERL+E+Q IN SLS LG VI AL
Sbjct: 260 SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL 319
Query: 396 ASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
++K H+PYRNSKLT++LQ+SLGG K LMFV ISP ++ E+L SL FAS+V
Sbjct: 320 SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 202/340 (59%), Gaps = 17/340 (5%)
Query: 124 LKGNIRVFCRCRPLNKAENANGST---SVVEFDSSQE------NELQI---VXXXXXXXX 171
LKGNIRVFCR R ++ + +++ S+ ++++++ Q+ EL I +
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 172 XXXXYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNY 231
+F+ E + + VF + ++ LDG NVC+FAYGQTG+GKTFTM P N G+
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMS-HPTN-GMIP 489
Query: 232 RTLEELFR-VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ 290
+L+++F + + + Y + +E+YNE I DLL + P+ K EIK G
Sbjct: 490 LSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKID-PNTKYEIKHDDIAGKT 548
Query: 291 EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT 350
V ++ + E+ +L + RS +T +N+ SSRSH + + ++G N + + +
Sbjct: 549 TVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESS 608
Query: 351 KSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG-HIPYRNSKL 409
L L+DLAGSER+ +G+RLKE+Q INKSLS LGDVI +L K G H+PYRNSKL
Sbjct: 609 YGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKL 668
Query: 410 THILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRV 449
T++L+ SLGG+ KTLMFV ISP + DL ET+ SL FA++V
Sbjct: 669 TYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV 708
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 189/332 (56%), Gaps = 16/332 (4%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEA 186
NI+V CR RPLN++E G + +F E+ + I VF+ +QE
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQG--EDTVVIASKPYAFDR-----VFQSSTSQEQ 60
Query: 187 VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TPENRGVNYRTLEELFRVSK 242
V+ K +V VL+GYN IFAYGQT +GKT TMEG PE G+ R ++++F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYG 302
+ + + + VS E+Y +KIRDLL + L + + + V G TE V
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLL----DVSKTNLSVHED-KNRVPYVKGCTERFVCS 175
Query: 303 TEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGS 362
+EV + + G R V TN NE SSRSH + ++VK EN QK L+LVDLAGS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 363 ERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCK 422
E+V K +G L E++ INKSLSALG+VISALA S ++PYR+SK+T ILQ SLGG+C+
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 423 TLMFVQISPSSSDLGETLCSLNFASRVRGIES 454
T + + SPSS + ET +L F R + I++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 189/331 (57%), Gaps = 18/331 (5%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEA 186
NI+V CR RPLN++E G + +F + E +V VF+ +QE
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKF----QGEDTVVIASKPYAFDR---VFQSSTSQEQ 60
Query: 187 VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TPENRGVNYRTLEELFRVSK 242
V+ K +V VL+GYN IFAYGQT +GKT TMEG PE G+ R ++++F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLL-VENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVY 301
+ + + + VS E+Y +KIRDLL V +N L + + + V G TE V
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN-----LSVHED-KNRVPYVKGCTERFVC 174
Query: 302 GTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361
+EV + + G R V TN NE SSRSH + ++VK EN QK L+LVDLAG
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDC 421
SE+V K +G L E++ INKSLSALG+VISALA S ++PYR+SK+T ILQ SLGG+C
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294
Query: 422 KTLMFVQISPSSSDLGETLCSLNFASRVRGI 452
+T + + SPSS + ET +L F R + I
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 190/333 (57%), Gaps = 18/333 (5%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEA 186
NI+V CR RPLN++E G V +F E+ + I VF+ +QE
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQG--EDTVMIASKPYAFDR-----VFQSSTSQEQ 60
Query: 187 VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TPENRGVNYRTLEELFRVSK 242
V+ K +V VL+GYN IFAYGQT +GK TMEG PE G+ R ++++F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLL-VENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVY 301
+ + + + VS E+Y +KIRDLL V +N L + + + V G TE V
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN-----LSVHED-KNRVPYVKGCTERFVC 174
Query: 302 GTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361
+EV + + G R V TN NE SSRSH + ++VK EN QK L+LVDLAG
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDC 421
SE+V K +G L E++ INKSLSALG+VISALA S ++PYR+SK+T ILQ SLGG+C
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294
Query: 422 KTLMFVQISPSSSDLGETLCSLNFASRVRGIES 454
+T + + SPSS + ET +L F R + I++
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 213/386 (55%), Gaps = 52/386 (13%)
Query: 111 SSERKQLYNEVIELKGN---IRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXX 167
SS R+ LY +G ++V RCRPL++ E A G ++ D + ++ +
Sbjct: 8 SSGRENLY-----FQGASEALKVVARCRPLSRKEEAAGHEQILTMDV-KLGQVTLRNPRA 61
Query: 168 XXXXXXXXY----VFKPEDNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222
+ V+ Q ++ +T +P++ SVL G+N +FAYGQTGTGKT+TM+G
Sbjct: 62 APGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG 121
Query: 223 T---PENRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278
T PE RGV E +F +S+ +N +Y + S LE+Y E+IRDLL S +P K+
Sbjct: 122 TWVEPELRGVIPNAFEHIFTHISRSQN--QQYLVRASYLEIYQEEIRDLL---SKEPGKR 176
Query: 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVS 338
LE+K+ E G + L+ +E+ ++ G + R+VGST+ NE+SSRSH + ++
Sbjct: 177 LELKENPETGVY-IKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIIT 235
Query: 339 VK-GENLINGQKT--KSHLWLVDLAGSERVGKI------------------------EVD 371
V+ E +GQ L LVDLAGSER K
Sbjct: 236 VECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAG 295
Query: 372 GERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQIS 430
GER KE+ IN SLSALG+VI+ALA ++S HIPYR+SKLT +LQ SLGG+ KT+M +
Sbjct: 296 GERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLG 355
Query: 431 PSSSDLGETLCSLNFASRVRGIESGP 456
P+S E+L +L FA+R + I++ P
Sbjct: 356 PASHSYDESLSTLRFANRAKNIKNKP 381
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQ--------ENELQIVXXXXXXXXXXXXYVF 178
NI+V RCRPLN E + +++ D + E E V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 179 KPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEEL 237
+F A KP++ +VL+G+N IFAYGQTG GKT+TM G E G + + L
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 238 FRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTE 297
F + + + S LE+YNE+IRDL+ N+ KL +K+ G V GL+
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNT-----KLPLKEDKTRGIY-VDGLSM 178
Query: 298 AQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT--KSHLW 355
+V E+ L+ G R V +T N+ SSRSH + V ++ +I ++ L
Sbjct: 179 HRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLN 238
Query: 356 LVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQS 415
LVDLAGSER K GE L E IN SLSALG VIS L + HIPYR+SKLT +LQ
Sbjct: 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQD 298
Query: 416 SLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGP 456
SLGG+ KTLM ISP+S++ ET+ +L +A R + I++ P
Sbjct: 299 SLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKP 339
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 71
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVP 131
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 132 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 71
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 131
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 132 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 71
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 131
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 132 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 15 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 73
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 74 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 133
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 134 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 191
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 192 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 251
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 252 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 311
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 312 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 71
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 131
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 132 LDGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 12 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 70
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 71 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 130
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 131 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 188
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 189 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 248
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 249 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 308
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 309 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V RCRP N AE + S+VE D ++ E+ + Y V
Sbjct: 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMV 62
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 122
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 123 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 180
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 181 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 240
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 241 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 300
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 301 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 191/349 (54%), Gaps = 22/349 (6%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----VFKPED 182
NI+V RCRP N AE + S+VE D ++ E+ + Y VF
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 61
Query: 183 NQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR---------GVN 230
Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P G+
Sbjct: 62 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 121
Query: 231 YRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ 290
RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 122 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 291 EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENLINGQK 349
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E I+G++
Sbjct: 180 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 239
Query: 350 TK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNS 407
L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+PYR S
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 299
Query: 408 KLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGP 456
KLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P
Sbjct: 300 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 188/342 (54%), Gaps = 29/342 (8%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPED-NQEA 186
+RV R RPL E +G S ++ + + +V ED QEA
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG------LGRVTLGRDRHFGFHVVLAEDAGQEA 66
Query: 187 VF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP------ENRGVNYRTLEELFR 239
V+ A +P++ + +G+N +FAYGQTG+GKT+TM + +G+ R + E F+
Sbjct: 67 VYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFK 126
Query: 240 VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQ 299
+ N ++ + VS LEVY E+ RDLL S+ +++++ E G + G+ E
Sbjct: 127 LID-ENDLLDCLVHVSYLEVYKEEFRDLL--EVGTASRDIQLRED-ERGNVVLCGVKEVD 182
Query: 300 VYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN--------GQKTK 351
V G +EV LL+ G R G+T+ N LSSRSH + V+++ GQ
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLV 242
Query: 352 SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS---KSGHIPYRNSK 408
S VDLAGSERV K GERLKES IN SL ALG+VISAL + HIPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302
Query: 409 LTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
+T IL+ SLGG+ KT+M +SPSSSD ETL +LN+ASR +
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 194/358 (54%), Gaps = 23/358 (6%)
Query: 123 ELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXY----V 177
E KG NI+V R RP N AE + S+VE D ++ E+ + Y V
Sbjct: 13 EEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRK-EVSVRTGGLADKSSRKTYTFDMV 71
Query: 178 FKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPENR------- 227
F Q V+ + P++ V+ GYN IFAYGQTGTGKTFTMEG +P
Sbjct: 72 FGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDP 131
Query: 228 --GVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285
G+ RTL ++F K + + + VS+LE+YNE++ DLL +S+ +
Sbjct: 132 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENL 344
+ GL E V+ +EV+++L+ GA R+ +T N SSRSH + V++ E
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 345 INGQKTK--SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
I+G++ L LVDLAGSE +G+ +R +E+ IN+SL LG VI+AL ++ H+
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
PYR SKLT ILQ SLGG +T + ISP+S +L ETL +L +A R + I + P Q
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 183/355 (51%), Gaps = 31/355 (8%)
Query: 123 ELKGNIRVFCRCRPLNKAENANGSTSVVE--------FDSSQE----------NELQIVX 164
+L +++V R RP N E A G VV FD QE ++
Sbjct: 7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIK 66
Query: 165 XXXXXXXXXXXYVFKPEDNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT 223
VF Q VF T KP++ S L+GYN + AYG TG GKT TM G+
Sbjct: 67 KQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Query: 224 PENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQ 283
+ GV Y T+ L++ VS LEVYNE+IRDLLV S L +++
Sbjct: 127 ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVN-----SGPLAVRE 181
Query: 284 AAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGEN 343
+ G V GLT Q +EE+ LL +G + R+ T+ N SSRSH + ++ ++ ++
Sbjct: 182 DTQKGVV-VHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQD 240
Query: 344 ---LINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS--- 397
IN + + L+DLAGSER G R E IN+SL ALG+VI+ALA
Sbjct: 241 KTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR 300
Query: 398 KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452
K+ HIPYRNSKLT +L+ SLGG+C+T+M +SPSS +T +L +A+R + I
Sbjct: 301 KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 186/342 (54%), Gaps = 29/342 (8%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPED-NQEA 186
+RV R RPL E +G S ++ + + +V ED QEA
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG------LGRVTLGRDRHFGFHVVLAEDAGQEA 66
Query: 187 VF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP------ENRGVNYRTLEELFR 239
V+ A +P++ + +G+N +FAYGQTG+GKT+TM + +G+ R + E F+
Sbjct: 67 VYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFK 126
Query: 240 VSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQ 299
+ N ++ + VS LEVY E+ RDLL S+ +++++ E G + G+ E
Sbjct: 127 LID-ENDLLDCLVHVSYLEVYKEEFRDLL--EVGTASRDIQLRED-ERGNVVLCGVKEVD 182
Query: 300 VYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN--------GQKTK 351
V G +EV LL+ G R G+T+ N LSSRSH + V++K GQ
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLV 242
Query: 352 SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS---KSGHIPYRNSK 408
S VDLAGSERV K GE KES IN SL ALG+VISAL + +IPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSK 302
Query: 409 LTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
+T IL+ SLGG+ KT+M +SPSSSD ETL +LN+ASR +
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 187/351 (53%), Gaps = 22/351 (6%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEA 186
NI+V+ R RPLN E S VV+ +E + F PE Q
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 187 VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG--TPE---------NRGVNYRTL 234
V++ P++ VL+GYN +FAYGQTGTGKT TM G T E + G+ R L
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 235 EELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEI-KQAAEGGTQEVP 293
LF + R + Y + +S LE+YNE++ DLL S + K+ I + + G+ +
Sbjct: 144 SHLF--DELRMMEVEYTMRISYLELYNEELCDLL---STDDTTKIRIFDDSTKKGSVIIQ 198
Query: 294 GLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVK-GENLINGQKT-- 350
GL E V+ ++V++LL+ G R +T N SSRSH + + V EN I G+
Sbjct: 199 GLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLK 258
Query: 351 KSHLWLVDLAGSERVGKIEVD-GERLKESQFINKSLSALGDVISALASKSGHIPYRNSKL 409
L LVDLAGSE V K + G R++E+ IN+SL LG VI+AL ++ H+PYR SKL
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKL 318
Query: 410 THILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460
T +LQ SLGG KT + ISP D+ ETL +L +A R + I++ P Q
Sbjct: 319 TRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 191/350 (54%), Gaps = 31/350 (8%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSSQ------ENELQIVXXXXXXXXXXXXYVFKPE 181
++V R RP+N+ E + VV+ D+++ L + F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 182 D--------NQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYR 232
D Q+ VF + ++ + DGYN CIFAYGQTG+GK++TM GT + G+ R
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 233 TLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQE 291
LF R K N +++ VS +E+YNEK+RDLL + + L++++ + G
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLL--DPKGSRQTLKVREHSVLGPY- 179
Query: 292 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKG-----ENLIN 346
V GL++ V +++ L+ G + R+V +TN NE SSRSH + ++++ ++ +
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239
Query: 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG------ 400
G+K L LVDLAGSER K G+RLKE INKSL+ LG VISALA +S
Sbjct: 240 GEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNK 298
Query: 401 HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
+PYR+S LT +L+ SLGG+ KT M +SP++ + ETL +L +A R +
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 166/294 (56%), Gaps = 33/294 (11%)
Query: 199 LDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELF-RVSKHRNGI--MRYELFVS 255
+GY+ CIFAYGQTG+GK++TM GTP+ G+ RT E+LF R++ ++ + Y + VS
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192
Query: 256 MLEVYNEKIRDLLVE-NSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314
EVYNE +RDLL N+P L+++++ G V LTE V G EE+ ++ G
Sbjct: 193 YFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPY-VKDLTEVPVRGLEEIIRWMRIGD 251
Query: 315 RVRSVGSTNANELSSRSHCLLRVSVK--GENLINGQKTK--SHLWLVDLAGSERVGKIEV 370
R+V ST N+ SSRSH + + +K +L T+ S + LVDLAGSER E
Sbjct: 252 GSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEA 311
Query: 371 DGERLKESQFINKSLSALGDVISALAS------------KSGH----------IPYRNSK 408
G+RL+E INKSL+ LG VI+ALA KSG +PYR+S
Sbjct: 312 TGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSV 371
Query: 409 LTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSD 462
LT +L+ SLGG+ KT M ISP +D ETL +L +A + + I + Q D
Sbjct: 372 LTWLLKDSLGGNSKTAMIACISP--TDYDETLSTLRYADQAKRIRTRAVVNQVD 423
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 185/353 (52%), Gaps = 24/353 (6%)
Query: 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQ 184
+G + V R RPLN E + G T+ V + + ++ VF +
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDN----NVIYQVDGSKSFNFDRVFHGNETT 58
Query: 185 EAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSK- 242
+ V+ + P++ S + GYN IFAYGQT +GKT+TM G+ ++ GV R + ++F+ K
Sbjct: 59 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKK 118
Query: 243 --HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQV 300
R ++R VS +E+YNE I DLL Q K L I++ V LTE V
Sbjct: 119 FPDREFLLR----VSYMEIYNETITDLLC--GTQKMKPLIIREDVNRNVY-VADLTEEVV 171
Query: 301 YGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV----KGE-NLINGQKTKSHLW 355
Y +E + + G + R G T N+ SSRSH + R+ + KGE + G SHL
Sbjct: 172 YTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLN 231
Query: 356 LVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK--SGHIPYRNSKLTHIL 413
LVDLAGSER + G RLKE IN+SL LG VI L+ G I YR+SKLT IL
Sbjct: 232 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRIL 291
Query: 414 QSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISEL 466
Q+SLGG+ KT + I+P S D ETL +L FAS + +++ P + EL
Sbjct: 292 QNSLGGNAKTRIICTITPVSFD--ETLTALQFASTAKYMKNTPYVNEVSTDEL 342
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 191/370 (51%), Gaps = 39/370 (10%)
Query: 115 KQLYNEVIELKG-NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXX 173
+Q+ + I + G +++V R RP N E + S +++ S +
Sbjct: 8 QQMGRDPINMPGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFS 67
Query: 174 XXYVF----KPED----NQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP 224
Y + PED +Q+ V+ + ++ +GYNVCIFAYGQTG GK++TM G
Sbjct: 68 FDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ 127
Query: 225 E--NRGVNYRTLEELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK--L 279
E +G+ + E+LF R++ N M Y + VS +E+Y E++RDLL P K L
Sbjct: 128 EKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-----NPKNKGNL 182
Query: 280 EIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV 339
+++ G V L++ V ++ +L+ SG + R+V +TN NE SSRSH + +
Sbjct: 183 RVREHPLLGPY-VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF 241
Query: 340 -----KGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISA 394
E I +K S + LVDLAGSER G RLKE INKSL+ LG VISA
Sbjct: 242 TQKRHDAETNITTEKV-SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 300
Query: 395 LA------------SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCS 442
LA K+ IPYR+S LT +L+ +LGG+ +T M +SP+ + ETL +
Sbjct: 301 LAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLST 360
Query: 443 LNFASRVRGI 452
L +A R + I
Sbjct: 361 LRYADRAKQI 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 184/358 (51%), Gaps = 38/358 (10%)
Query: 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVF----KPE 181
+++V R RP N E + S +++ S + Y + PE
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 182 D----NQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPE--NRGVNYRTL 234
D +Q+ V+ + ++ +GYNVCIFAYGQTG GK++TM G E +G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 235 EELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK--LEIKQAAEGGTQE 291
E+LF R++ N M Y + VS +E+Y E++RDLL P K L +++ G
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-----NPKNKGNLRVREHPLLGPY- 177
Query: 292 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV-----KGENLIN 346
V L++ V ++ +L+ SG + R+V +TN NE SSRSH + + E I
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---------- 396
+K S + LVDLAGSER G RLKE INKSL+ LG VISALA
Sbjct: 238 TEKV-SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 397 --SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452
K+ IPYR+S LT +L+ +LGG+ +T M +SP+ + ETL +L +A R + I
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 184/358 (51%), Gaps = 38/358 (10%)
Query: 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVF----KPE 181
+++V R RP N E + S +++ S + Y + PE
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 182 D----NQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPE--NRGVNYRTL 234
D +Q+ V+ + ++ +GYNVCIFAYGQTG GK++TM G E +G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 235 EELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK--LEIKQAAEGGTQE 291
E+LF R++ N M Y + VS +E+Y E++RDLL P K L +++ G
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-----NPKNKGNLRVREHPLLGPY- 177
Query: 292 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV-----KGENLIN 346
V L++ V ++ +L+ SG + R+V +TN NE SSRSH + + E I
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---------- 396
+K S + LVDLAGSER G RLKE INKSL+ LG VISALA
Sbjct: 238 TEKV-SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 397 --SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452
K+ IPYR+S LT +L+ +LGG+ +T M +SP+ + ETL +L +A R + I
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 184/358 (51%), Gaps = 38/358 (10%)
Query: 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVF----KPE 181
+++V R RP N E + S +++ S + Y + PE
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 182 D----NQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPE--NRGVNYRTL 234
D +Q+ V+ + ++ +GYNVCIFAYGQTG GK++TM G E +G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 235 EELF-RVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK--LEIKQAAEGGTQE 291
E+LF R++ N M Y + VS +E+Y E++RDLL P K L +++ G
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL-----NPKNKGNLRVREHPLLGPY- 177
Query: 292 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV-----KGENLIN 346
V L++ V ++ +L+ SG + R+V +TN NE SSRSH + + E I
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---------- 396
+K S + LVDLAGSER G RLKE INKSL+ LG VISALA
Sbjct: 238 TEKV-SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 397 --SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452
K+ IPYR+S LT +L+ +LGG+ +T M +SP+ + ETL +L +A R + I
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 158/282 (56%), Gaps = 22/282 (7%)
Query: 183 NQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPEN---RGVNYRTLEELF 238
+Q+ V+ K VV+ LDGYN I YGQTG GKT+TM G EN RG+ R L+++F
Sbjct: 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVF 143
Query: 239 RVSKHR--NGIMRYELFVSMLEVYNEKIRDLL-----VENSNQPSKKLEIKQAAEGGTQE 291
R+ + R + I + VS LE+YNE + DLL V S P +E Q
Sbjct: 144 RMIEERPTHAI---TVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVF----- 195
Query: 292 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGEN--LINGQK 349
+ GL+ E+ + LL G R + S N+ SSRSHC+ + ++ + L +
Sbjct: 196 IKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKY 255
Query: 350 TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSGHIPYRNSK 408
S + LVDLAGSER+GK +G+ LKE+ +INKSLS L I AL K HIP+R K
Sbjct: 256 ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCK 315
Query: 409 LTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
LTH L+ SLGG+C ++ I ++ L ETL SL FASR++
Sbjct: 316 LTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 186/359 (51%), Gaps = 18/359 (5%)
Query: 111 SSERKQLYNEVIELKGNIRVFCRCRPL-NKAENANGSTSVVEFDSSQENELQIVXXXXXX 169
SS R+ LY + + +RV R RP + A+ V DS L+I
Sbjct: 8 SSGRENLYFQGPPAR--VRVAVRLRPFVDGTAGASDPPCVRGMDSC---SLEIANWRNHQ 62
Query: 170 XXXXXXY--VFKPEDNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPEN 226
+ + Q+ ++A + +P++ +L+G N + AYG TG GKT TM G+PE
Sbjct: 63 ETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQ 122
Query: 227 RGVNYRTLEELFRVSKHRNGIMR-YELFVSM--LEVYNEKIRDLLVENSNQPSKKLEIKQ 283
GV R L +L ++++ R + L V+M LE+Y EK+ DLL + S L I++
Sbjct: 123 PGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL----DPASGDLVIRE 178
Query: 284 AAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV-KGE 342
G +PGL++ + + +R R+VG+T N+ SSRSH +L V V + E
Sbjct: 179 DCRGNIL-IPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRE 237
Query: 343 NLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHI 402
L ++ + L+L+DLAGSE + G RLKES IN SL LG V+ AL +
Sbjct: 238 RLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRV 297
Query: 403 PYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQS 461
PYR+SKLT +LQ SLGG +++ I+P +T+ +LNFA+R + + + P +S
Sbjct: 298 PYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNES 356
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 171/342 (50%), Gaps = 33/342 (9%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSS-----QENELQI-VXXXXXXXXXXXXYVFKPE 181
I V R RPLNK E A V+ S E +L++ + + F
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 182 DNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT------PENRGVNYRTL 234
+ E V+ T +P+V ++ +G FAYGQTG+GKT TM G ++G+
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 235 EELFRVS---KHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ- 290
++F + ++RN + E++V+ E+YN K+ DLL +KK +++ + Q
Sbjct: 193 RDVFLLKNQPRYRN--LNLEVYVTFFEIYNGKVFDLL-------NKKAKLRVLEDSRQQV 243
Query: 291 EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT 350
+V GL E V ++V +++ G+ R+ G T AN SSRSH ++ ++ + ++G+
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK-- 301
Query: 351 KSHLWLVDLAGSERVGKIE-VDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKL 409
LVDLAG+ER D + E INKSL AL + I AL H P+R SKL
Sbjct: 302 ---FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 358
Query: 410 THILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
T +L+ S +G + +T M ISP S TL +L +A RV+
Sbjct: 359 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 170/342 (49%), Gaps = 33/342 (9%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSS-----QENELQI-VXXXXXXXXXXXXYVFKPE 181
I V R RPLNK E A V+ S E +L++ + + F
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 182 DNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT------PENRGVNYRTL 234
+ E V+ T +P+V ++ +G FAYGQTG+GKT TM G ++G+
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172
Query: 235 EELFRVSK---HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ- 290
++F + +R + E++V+ E+YN K+ DLL +KK +++ +G Q
Sbjct: 173 RDVFLLKNQPCYRK--LGLEVYVTFFEIYNGKLFDLL-------NKKAKLRVLEDGKQQV 223
Query: 291 EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT 350
+V GL E V ++V +++ G+ R+ G T AN SSRSH ++ ++ + ++G+
Sbjct: 224 QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGK-- 281
Query: 351 KSHLWLVDLAGSERVGKIE-VDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKL 409
LVDLAG+ER D + E INKSL AL + I AL H P+R SKL
Sbjct: 282 ---FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 338
Query: 410 THILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
T +L+ S +G + +T M ISP S TL +L +A RV+
Sbjct: 339 TQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 171/342 (50%), Gaps = 33/342 (9%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSS-----QENELQI-VXXXXXXXXXXXXYVFKPE 181
I V R RPLNK E A V+ S E +L++ + + F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 182 DNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT------PENRGVNYRTL 234
+ E V+ T +P+V ++ +G FAYGQTG+GKT TM G ++G+
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 235 EELFRVS---KHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ- 290
++F + ++RN + E++V+ E+YN K+ DLL +KK +++ + Q
Sbjct: 121 RDVFLLKNQPRYRN--LNLEVYVTFFEIYNGKVFDLL-------NKKAKLRVLEDSRQQV 171
Query: 291 EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT 350
+V GL E V ++V +++ G+ R+ G T AN SSRSH ++ ++ + ++G+
Sbjct: 172 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK-- 229
Query: 351 KSHLWLVDLAGSERVGKIE-VDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKL 409
LVDLAG+ER D + E INKSL AL + I AL H P+R SKL
Sbjct: 230 ---FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 286
Query: 410 THILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
T +L+ S +G + +T M ISP S TL +L +A RV+
Sbjct: 287 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 151/286 (52%), Gaps = 23/286 (8%)
Query: 176 YVFKPEDNQEAVFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPE------NRG 228
Y F E V+ T +P+V ++ + FAYGQTG+GKT TM G ++G
Sbjct: 145 YAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKG 204
Query: 229 VNYRTLEELFRVSKHRN-GIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEG 287
+ ++F + K N + +++ + E+Y+ K+ DLL ++K +++ +G
Sbjct: 205 IYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL-------NRKTKLRVLEDG 257
Query: 288 GTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN 346
Q +V GL E +V E+V +L+ G R+ G T+AN SSRSH + ++ ++ + ++
Sbjct: 258 KQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH 317
Query: 347 GQKTKSHLWLVDLAGSERVGKI-EVDGERLKESQFINKSLSALGDVISALASKSGHIPYR 405
G+ L+DLAG+ER D + E INKSL AL + I AL H P+R
Sbjct: 318 GK-----FSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFR 372
Query: 406 NSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
SKLT +L+ S +G + +T M ISP + TL +L +A+RV+
Sbjct: 373 ASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 124/250 (49%), Gaps = 31/250 (12%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFK----PEDN 183
I+V CR RPLN+AE G + +F + YVF P
Sbjct: 8 IKVMCRFRPLNEAEILRGDKFIPKFKGEE----------TVVIGQGKPYVFDRVLPPNTT 57
Query: 184 QEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TPENRGVNYRTLEELFR 239
QE V+ A K +V VL+GYN IFAYGQT +GKT TMEG P+ G+ R ++F
Sbjct: 58 QEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFD 117
Query: 240 VSKHRNGIMRYELFVSMLEVYNEKIRDLL-VENSNQPSKKLEIKQAAEGGTQEVP---GL 295
+ + + + VS E+Y +KIRDLL V +N A VP G
Sbjct: 118 HIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL---------AVHEDKNRVPYVKGC 168
Query: 296 TEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLW 355
TE V EEV +++ G R V TN NE SSRSH + +++K EN+ +K L+
Sbjct: 169 TERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLY 228
Query: 356 LVDLAGSERV 365
LVDLAGSE+V
Sbjct: 229 LVDLAGSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 165/343 (48%), Gaps = 35/343 (10%)
Query: 128 IRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVXXXXXXXXXXXXYVFKPEDNQEAV 187
I+V R RPL++ E + ++ + +N + Y+ + E + V
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDII----TVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKV 57
Query: 188 FAQT-----------KPVVTSVLDGYNVC-IFAYGQTGTGKTFTMEGT-----PENRGVN 230
F T KP++ + + VC FAYGQTG+GKT+TM G+ + G+
Sbjct: 58 FDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIF 117
Query: 231 YRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQ 290
++F + +F+S E+Y K+ DLL +K ++ A E G +
Sbjct: 118 QYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL--------QKRKMVAALENGKK 169
Query: 291 EV--PGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQ 348
EV L +V EE+ + G +R +G + N+ SSRSH +L + +K IN
Sbjct: 170 EVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKN 226
Query: 349 KTKSHLWLVDLAGSER-VGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNS 407
+ + +DLAGSER + + + + IN+SL AL + I A+ S HIP+R+S
Sbjct: 227 TSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDS 286
Query: 408 KLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
+LT +L+ G K++M ISP+ S +TL +L ++SRV+
Sbjct: 287 ELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 26/284 (9%)
Query: 176 YVFKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM------EGTPENRG 228
+ F +Q+ ++ A P+V +L+G+ AYGQTGTGK+++M E PE+ G
Sbjct: 67 HAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLG 126
Query: 229 VNYRTLEELF-RV-SKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAE 286
+ R L ++F RV ++ N +++ S +E+YNEK DLL + P ++
Sbjct: 127 ILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRC-- 184
Query: 287 GGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN 346
T ++ ++ +L+ G R R V TN N SSRSH ++ + VK +
Sbjct: 185 ---------TCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT--- 232
Query: 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRN 406
S + +VDLAGSE V + +G +E IN L ++ V+ ++A+ IPYR+
Sbjct: 233 ---HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRD 289
Query: 407 SKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450
S LT +LQ+SL ISP DL ETL +L F + +
Sbjct: 290 SVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 143/285 (50%), Gaps = 26/285 (9%)
Query: 176 YVFKPEDNQEAVF-AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM------EGTPENRG 228
+ F +Q+ ++ A P+V +L+G+ AYGQTGTGK+++M E PE+ G
Sbjct: 67 HAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLG 126
Query: 229 VNYRTLEELF-RV-SKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAE 286
+ R L ++F RV ++ N +++ S +E+YNEK DLL + P ++
Sbjct: 127 ILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRC-- 184
Query: 287 GGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN 346
T ++ ++ +L+ G R R V TN N SSRSH ++ + VK +
Sbjct: 185 ---------TCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT--- 232
Query: 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRN 406
S + +VDLAGSE V + +G +E IN L ++ V+ ++A+ IPYR+
Sbjct: 233 ---HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRD 289
Query: 407 SKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRG 451
S LT +LQ+SL ISP DL ETL +L F + +
Sbjct: 290 SVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 382 NKSLSALGDVISALASKS-GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETL 440
NKSLSALG+VISALA + H+PYR+SK+T ILQ SLGG+C+T + + SPS + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 441 CSLNFASRVRGIES 454
+L F R + I++
Sbjct: 61 STLMFGQRAKTIKN 74
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 381 INKSLSALGDVISALASKS-GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGET 439
INKSLSALG+VISALA + H+PYR+SK+T ILQ SL G+C+T + + SPS + ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 440 LCSLNFASRVRGIES 454
+L F R + I++
Sbjct: 64 KSTLMFGQRAKTIKN 78
>pdb|3LHL|A Chain A, Crystal Structure Of A Putative Agmatinase From
Clostridium Difficile
Length = 287
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 195 VTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRN 245
+ + L+G N+ + F GTPE GVNYR +E+F++ K+ N
Sbjct: 188 IVNXLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSN 238
>pdb|3CX6|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
pdb|3CX7|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 203
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 345 INGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVIS 393
IN ++K L L L G + + +DG+ L+E Q K L+ALGD++S
Sbjct: 128 INDYRSKRTLGLGSLYGENDL--LGLDGDPLRERQMAEKQLAALGDILS 174
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 132/346 (38%), Gaps = 83/346 (23%)
Query: 183 NQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTL-------- 234
Q+ + A KP+ ++ G+ + +G GTGKT E + +
Sbjct: 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVK 89
Query: 235 ---EELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQE 291
E + R ++RN R LFV + +N+ +D + + + G T E
Sbjct: 90 EIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF------IGATTE 143
Query: 292 VPG-------LTEAQVY-----GTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV 339
P L+ A+VY TE++ ++L T A E +R + + +
Sbjct: 144 NPSFELNSALLSRARVYLLKSLSTEDIEQVL-----------TQAMEDKTRGYGGQDIVL 192
Query: 340 KGEN------LINGQKTKSHLWL---VDLAGSERVGK--------IEVDGERLKESQFIN 382
E L+NG ++ L D+A + GK E+ GER ++F N
Sbjct: 193 PDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER--SARFDN 250
Query: 383 KSLSALGDVISAL-ASKSGHIP----YRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLG 437
K D+ISAL S G P Y +++ + GGD + ++ +S D+G
Sbjct: 251 KG-DRFYDLISALHKSVRGSAPDAALYWYARII-----TAGGDPLYVARRCLAIASEDVG 304
Query: 438 E--------TLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEK 475
+ + + +RV GPA + I++ Y A K
Sbjct: 305 NADPRAMQVAIAAWDCFTRV-----GPAEGERAIAQAIVYLACAPK 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,445,540
Number of Sequences: 62578
Number of extensions: 784951
Number of successful extensions: 1877
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 94
length of query: 762
length of database: 14,973,337
effective HSP length: 106
effective length of query: 656
effective length of database: 8,340,069
effective search space: 5471085264
effective search space used: 5471085264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)