Query 004310
Match_columns 762
No_of_seqs 455 out of 2265
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 1.7E-93 3.7E-98 827.1 30.5 427 45-477 233-665 (670)
2 KOG0243 Kinesin-like protein [ 100.0 1.4E-87 2.9E-92 783.8 36.3 334 124-461 47-399 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 3.9E-87 8.5E-92 752.7 25.6 334 125-463 4-347 (574)
4 KOG0245 Kinesin-like protein [ 100.0 3.1E-85 6.7E-90 751.0 27.2 346 126-477 4-374 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 1.4E-82 3.1E-87 700.0 32.7 330 124-460 5-339 (607)
6 cd01370 KISc_KIP3_like Kinesin 100.0 6E-82 1.3E-86 686.5 32.2 319 127-452 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.9E-80 4E-85 674.6 34.0 318 126-452 1-337 (337)
8 PLN03188 kinesin-12 family pro 100.0 2.6E-80 5.7E-85 728.4 36.0 333 114-461 82-443 (1320)
9 KOG0242 Kinesin-like protein [ 100.0 8.9E-81 1.9E-85 723.3 30.6 333 125-464 5-343 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.6E-79 3.4E-84 669.3 33.4 316 126-450 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.9E-78 4.2E-83 663.1 35.0 328 126-458 1-355 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 7.5E-78 1.6E-82 650.4 33.0 312 126-450 1-322 (322)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5.4E-77 1.2E-81 650.6 35.3 331 126-460 2-351 (352)
14 cd01366 KISc_C_terminal Kinesi 100.0 1.5E-76 3.2E-81 641.3 36.2 328 125-455 1-329 (329)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 2.4E-76 5.2E-81 641.3 34.6 321 126-452 1-333 (333)
16 KOG0241 Kinesin-like protein [ 100.0 7.4E-77 1.6E-81 670.0 31.3 403 125-535 3-436 (1714)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.3E-76 9.4E-81 636.8 35.0 319 126-452 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 2.7E-76 5.9E-81 637.4 32.6 313 127-450 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 1.6E-75 3.5E-80 631.6 34.0 315 127-452 1-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-75 3.7E-80 635.8 33.7 320 127-453 2-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 3.1E-74 6.7E-79 625.1 32.9 315 127-450 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 4.1E-72 9E-77 607.4 35.9 327 127-458 1-334 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 5.4E-72 1.2E-76 605.9 27.7 320 133-452 1-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 1.2E-70 2.5E-75 593.9 35.6 318 127-450 1-328 (328)
25 KOG0247 Kinesin-like protein [ 100.0 2.2E-67 4.8E-72 591.5 31.9 330 123-456 28-440 (809)
26 KOG0246 Kinesin-like protein [ 100.0 2.8E-66 6.2E-71 569.1 27.3 317 127-454 209-543 (676)
27 KOG0244 Kinesin-like protein [ 100.0 3.4E-65 7.3E-70 588.3 12.8 334 134-477 1-343 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 6.3E-62 1.4E-66 559.9 29.6 287 169-460 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.3E-51 2.8E-56 413.1 17.6 176 187-431 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 99.0 3.7E-12 8E-17 148.2 -9.1 273 107-396 287-566 (568)
31 KOG0239 Kinesin (KAR3 subfamil 95.2 0.041 8.9E-07 66.1 7.6 87 169-270 25-111 (670)
32 PF00308 Bac_DnaA: Bacterial d 93.8 0.026 5.7E-07 58.6 1.4 50 170-221 3-52 (219)
33 COG0556 UvrB Helicase subunit 93.4 0.063 1.4E-06 62.1 3.6 92 170-265 3-101 (663)
34 COG0593 DnaA ATPase involved i 91.6 0.19 4.1E-06 57.1 4.4 51 169-221 81-131 (408)
35 TIGR01242 26Sp45 26S proteasom 90.9 1.4 3E-05 49.1 10.4 17 204-220 157-173 (364)
36 PRK14086 dnaA chromosomal repl 90.4 0.12 2.5E-06 61.6 1.3 51 170-222 283-333 (617)
37 PRK06893 DNA replication initi 90.3 0.14 3.1E-06 53.4 1.7 47 170-221 11-57 (229)
38 COG2805 PilT Tfp pilus assembl 90.0 0.13 2.9E-06 56.0 1.3 30 192-221 114-143 (353)
39 PRK12377 putative replication 89.8 0.15 3.3E-06 54.2 1.5 50 172-222 71-120 (248)
40 PRK06620 hypothetical protein; 89.7 0.14 3.1E-06 53.1 1.1 50 169-221 10-62 (214)
41 PRK06835 DNA replication prote 89.6 0.087 1.9E-06 58.3 -0.6 37 185-222 166-202 (329)
42 PRK07952 DNA replication prote 89.2 0.2 4.4E-06 53.2 1.8 50 172-222 69-118 (244)
43 PRK03992 proteasome-activating 89.1 0.39 8.4E-06 54.3 4.1 18 203-220 165-182 (389)
44 PRK08116 hypothetical protein; 89.0 0.14 3E-06 55.0 0.5 50 171-221 81-132 (268)
45 COG2804 PulE Type II secretory 89.0 0.15 3.3E-06 58.9 0.8 30 192-221 247-276 (500)
46 PRK14088 dnaA chromosomal repl 88.6 0.2 4.4E-06 57.5 1.5 50 169-221 99-148 (440)
47 TIGR00362 DnaA chromosomal rep 88.6 0.22 4.8E-06 56.2 1.8 51 169-221 104-154 (405)
48 PRK08084 DNA replication initi 88.4 0.24 5.1E-06 52.0 1.7 48 169-221 16-63 (235)
49 PRK05642 DNA replication initi 88.0 0.27 5.9E-06 51.6 1.8 50 170-221 14-63 (234)
50 PRK00149 dnaA chromosomal repl 87.8 0.27 5.9E-06 56.4 1.8 51 169-221 116-166 (450)
51 PRK14087 dnaA chromosomal repl 87.7 0.26 5.7E-06 56.8 1.7 49 171-221 111-159 (450)
52 PRK08939 primosomal protein Dn 87.5 1.6 3.4E-05 48.0 7.5 51 172-222 124-175 (306)
53 PTZ00454 26S protease regulato 86.9 1.9 4.1E-05 49.1 7.9 50 171-220 141-196 (398)
54 PRK09087 hypothetical protein; 86.6 0.38 8.2E-06 50.4 2.0 48 169-221 15-62 (226)
55 TIGR03420 DnaA_homol_Hda DnaA 85.9 0.43 9.2E-06 48.8 1.9 46 170-220 10-55 (226)
56 COG1474 CDC6 Cdc6-related prot 85.6 0.83 1.8E-05 51.4 4.1 52 193-259 31-83 (366)
57 PRK08903 DnaA regulatory inact 85.1 0.51 1.1E-05 48.7 2.0 49 169-221 12-60 (227)
58 PRK06526 transposase; Provisio 85.0 0.52 1.1E-05 50.3 2.1 44 172-222 73-117 (254)
59 TIGR02928 orc1/cdc6 family rep 82.9 0.66 1.4E-05 51.1 1.8 37 184-220 20-57 (365)
60 COG1484 DnaC DNA replication p 82.4 0.68 1.5E-05 49.4 1.7 49 172-222 76-124 (254)
61 PF04851 ResIII: Type III rest 81.9 0.65 1.4E-05 45.0 1.2 21 202-222 24-44 (184)
62 cd00046 DEXDc DEAD-like helica 81.6 0.6 1.3E-05 42.1 0.8 17 206-222 3-19 (144)
63 PRK08181 transposase; Validate 80.9 0.74 1.6E-05 49.7 1.3 21 200-222 105-125 (269)
64 PRK00411 cdc6 cell division co 80.1 1 2.2E-05 50.2 2.1 34 187-220 38-72 (394)
65 PRK08727 hypothetical protein; 79.9 0.71 1.5E-05 48.3 0.8 45 170-221 14-59 (233)
66 PF13401 AAA_22: AAA domain; P 79.0 0.65 1.4E-05 43.0 0.1 18 203-220 4-21 (131)
67 PF05673 DUF815: Protein of un 79.0 0.57 1.2E-05 49.9 -0.3 131 171-335 23-155 (249)
68 KOG0728 26S proteasome regulat 78.7 28 0.0006 37.7 11.9 71 49-137 20-90 (404)
69 PTZ00361 26 proteosome regulat 78.3 10 0.00022 43.9 9.4 16 205-220 219-234 (438)
70 cd00009 AAA The AAA+ (ATPases 78.2 1.1 2.3E-05 40.9 1.3 19 202-220 18-36 (151)
71 PRK12422 chromosomal replicati 77.6 1.3 2.8E-05 51.2 2.0 51 169-221 105-159 (445)
72 PF01935 DUF87: Domain of unkn 77.4 0.9 2E-05 46.8 0.6 56 382-438 164-219 (229)
73 TIGR02538 type_IV_pilB type IV 77.0 0.94 2E-05 53.7 0.7 28 194-221 307-334 (564)
74 PTZ00112 origin recognition co 76.8 0.83 1.8E-05 56.5 0.2 29 192-220 768-798 (1164)
75 smart00382 AAA ATPases associa 76.7 0.99 2.1E-05 40.5 0.6 18 204-221 3-20 (148)
76 PRK10436 hypothetical protein; 76.7 1 2.2E-05 52.2 0.9 28 194-221 209-236 (462)
77 PF12846 AAA_10: AAA-like doma 76.5 0.98 2.1E-05 47.5 0.6 19 203-221 1-19 (304)
78 PF13191 AAA_16: AAA ATPase do 76.5 1.1 2.4E-05 43.7 0.9 32 189-220 10-41 (185)
79 TIGR02533 type_II_gspE general 76.4 1.1 2.4E-05 52.2 1.1 28 194-221 233-260 (486)
80 cd01131 PilT Pilus retraction 76.1 1.1 2.3E-05 45.9 0.7 19 203-221 1-19 (198)
81 TIGR00631 uvrb excinuclease AB 76.0 2.1 4.5E-05 51.8 3.3 90 172-265 2-98 (655)
82 PF13245 AAA_19: Part of AAA d 76.0 1.2 2.5E-05 39.0 0.8 26 195-221 3-28 (76)
83 PRK06921 hypothetical protein; 75.9 1.1 2.5E-05 48.0 0.9 38 185-222 96-136 (266)
84 PF00270 DEAD: DEAD/DEAH box h 75.0 1.1 2.4E-05 43.0 0.5 26 194-221 7-32 (169)
85 COG3883 Uncharacterized protei 75.0 40 0.00087 36.5 12.1 66 479-545 57-122 (265)
86 KOG0727 26S proteasome regulat 74.1 9.8 0.00021 41.1 7.2 117 129-246 100-249 (408)
87 TIGR01420 pilT_fam pilus retra 73.6 1.4 3E-05 49.0 0.8 28 194-221 113-140 (343)
88 PRK12402 replication factor C 73.4 1.4 3.1E-05 47.7 0.9 43 172-221 12-54 (337)
89 TIGR03015 pepcterm_ATPase puta 72.9 1.7 3.6E-05 45.6 1.3 26 195-220 35-60 (269)
90 KOG4603 TBP-1 interacting prot 71.7 18 0.0004 36.6 8.0 83 40-123 72-180 (201)
91 TIGR02525 plasmid_TraJ plasmid 71.1 1.7 3.8E-05 49.0 0.9 19 202-220 148-166 (372)
92 TIGR02524 dot_icm_DotB Dot/Icm 70.2 1.9 4.1E-05 48.5 0.9 21 201-221 132-152 (358)
93 cd01129 PulE-GspE PulE/GspE Th 70.1 2 4.3E-05 46.1 1.1 28 194-221 71-98 (264)
94 PF13479 AAA_24: AAA domain 69.8 2 4.4E-05 44.3 1.0 20 203-222 3-22 (213)
95 PF09304 Cortex-I_coil: Cortex 69.4 92 0.002 29.4 11.5 67 466-532 18-88 (107)
96 PF01637 Arch_ATPase: Archaeal 68.9 1.5 3.3E-05 44.0 -0.1 28 193-220 10-37 (234)
97 PRK10884 SH3 domain-containing 68.9 8.7 0.00019 40.1 5.4 81 48-128 88-169 (206)
98 PF13207 AAA_17: AAA domain; P 68.4 1.9 4.2E-05 39.4 0.5 16 205-220 1-16 (121)
99 PF00448 SRP54: SRP54-type pro 68.3 1.8 4E-05 44.3 0.3 17 205-221 3-19 (196)
100 KOG2543 Origin recognition com 68.1 2.4 5.2E-05 47.9 1.2 37 205-261 32-68 (438)
101 PF01695 IstB_IS21: IstB-like 68.0 2.2 4.7E-05 43.1 0.7 19 204-222 48-66 (178)
102 PRK09183 transposase/IS protei 67.4 3.6 7.9E-05 43.9 2.4 21 200-222 101-121 (259)
103 PF00437 T2SE: Type II/IV secr 67.1 1.8 3.9E-05 45.9 0.0 26 194-220 119-144 (270)
104 PF13604 AAA_30: AAA domain; P 67.0 2.1 4.4E-05 43.8 0.4 27 194-220 9-35 (196)
105 smart00053 DYNc Dynamin, GTPas 66.0 13 0.00028 39.6 6.2 54 299-365 85-138 (240)
106 PRK13894 conjugal transfer ATP 65.4 2.5 5.5E-05 46.7 0.7 27 193-220 139-165 (319)
107 COG5008 PilU Tfp pilus assembl 65.4 3.9 8.6E-05 44.3 2.1 30 192-221 116-145 (375)
108 PF00004 AAA: ATPase family as 64.5 2.5 5.4E-05 38.7 0.4 15 206-220 1-15 (132)
109 PF07106 TBPIP: Tat binding pr 64.5 30 0.00064 34.5 8.1 59 50-109 76-134 (169)
110 TIGR02782 TrbB_P P-type conjug 63.0 3.1 6.7E-05 45.5 0.8 28 193-221 123-150 (299)
111 TIGR01817 nifA Nif-specific re 62.5 5.8 0.00013 46.6 3.0 122 171-314 192-318 (534)
112 PF14282 FlxA: FlxA-like prote 62.2 46 0.00099 31.0 8.3 55 475-529 20-78 (106)
113 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.1 25 0.00054 33.8 6.8 73 51-124 57-131 (132)
114 cd01377 MYSc_type_II Myosin mo 61.8 29 0.00064 42.5 8.9 37 184-220 71-108 (693)
115 PF13086 AAA_11: AAA domain; P 61.5 3.4 7.3E-05 41.5 0.7 26 195-221 10-35 (236)
116 TIGR00635 ruvB Holliday juncti 61.3 2.9 6.4E-05 44.9 0.3 39 182-220 7-47 (305)
117 cd00124 MYSc Myosin motor doma 61.3 23 0.00049 43.3 7.8 36 185-220 67-103 (679)
118 PRK13833 conjugal transfer pro 61.0 3.6 7.8E-05 45.7 0.9 27 193-220 135-161 (323)
119 COG1201 Lhr Lhr-like helicases 60.9 7.4 0.00016 48.2 3.6 53 194-257 30-82 (814)
120 smart00487 DEXDc DEAD-like hel 60.7 4.3 9.4E-05 38.9 1.3 25 197-222 19-43 (201)
121 PF01580 FtsK_SpoIIIE: FtsK/Sp 60.5 3 6.4E-05 42.3 0.1 17 205-221 40-56 (205)
122 PF08826 DMPK_coil: DMPK coile 60.2 1E+02 0.0023 26.2 9.2 43 480-522 17-59 (61)
123 PF00580 UvrD-helicase: UvrD/R 59.2 3.3 7.1E-05 43.8 0.2 20 202-221 12-31 (315)
124 PF02562 PhoH: PhoH-like prote 58.9 4.8 0.0001 41.9 1.4 19 202-220 18-36 (205)
125 PF05970 PIF1: PIF1-like helic 58.7 4.6 0.0001 45.2 1.3 37 181-220 3-39 (364)
126 PF00910 RNA_helicase: RNA hel 58.6 3.4 7.4E-05 37.9 0.2 26 206-241 1-26 (107)
127 PRK13342 recombination factor 58.2 4.3 9.3E-05 46.2 0.9 38 183-220 16-53 (413)
128 PF06309 Torsin: Torsin; Inte 58.2 3.8 8.2E-05 39.6 0.4 26 205-240 55-80 (127)
129 PF00063 Myosin_head: Myosin h 58.0 3.8 8.2E-05 49.8 0.5 36 185-220 66-102 (689)
130 TIGR03499 FlhF flagellar biosy 58.0 4.2 9E-05 44.0 0.7 17 205-221 196-212 (282)
131 PTZ00424 helicase 45; Provisio 57.5 4.2 9.1E-05 45.3 0.7 26 193-220 57-82 (401)
132 PRK13851 type IV secretion sys 57.5 4.1 8.9E-05 45.6 0.6 28 193-221 153-180 (344)
133 PF13671 AAA_33: AAA domain; P 57.5 4.1 8.8E-05 38.3 0.5 15 206-220 2-16 (143)
134 PRK11388 DNA-binding transcrip 56.9 12 0.00026 45.0 4.4 122 171-314 321-444 (638)
135 PRK11776 ATP-dependent RNA hel 56.6 4.9 0.00011 46.1 1.0 25 194-220 34-58 (460)
136 cd00268 DEADc DEAD-box helicas 55.9 5.4 0.00012 39.9 1.1 25 194-220 29-53 (203)
137 PRK12723 flagellar biosynthesi 55.8 4.9 0.00011 45.7 0.9 18 203-220 174-191 (388)
138 PRK11608 pspF phage shock prot 55.4 7.3 0.00016 43.0 2.1 119 174-314 5-128 (326)
139 KOG0335 ATP-dependent RNA heli 55.3 4.7 0.0001 46.8 0.6 63 194-262 104-189 (482)
140 cd01130 VirB11-like_ATPase Typ 55.2 5.2 0.00011 40.2 0.8 27 193-220 16-42 (186)
141 PF12329 TMF_DNA_bd: TATA elem 54.6 1.5E+02 0.0032 26.0 9.7 50 473-522 4-53 (74)
142 PF13238 AAA_18: AAA domain; P 54.5 4.9 0.00011 36.6 0.5 15 206-220 1-15 (129)
143 PF07728 AAA_5: AAA domain (dy 54.2 4.5 9.8E-05 38.1 0.2 15 206-220 2-16 (139)
144 COG2433 Uncharacterized conser 53.9 26 0.00056 41.8 6.2 77 49-125 418-508 (652)
145 KOG0989 Replication factor C, 53.8 6.5 0.00014 43.4 1.3 28 194-221 47-75 (346)
146 PRK15424 propionate catabolism 53.7 7.7 0.00017 46.0 2.1 128 172-317 216-353 (538)
147 PF06414 Zeta_toxin: Zeta toxi 53.4 6.1 0.00013 40.1 1.0 20 201-220 13-32 (199)
148 PF07724 AAA_2: AAA domain (Cd 52.9 5.4 0.00012 40.1 0.5 17 204-220 4-20 (171)
149 PF08614 ATG16: Autophagy prot 52.8 1.2E+02 0.0025 31.1 10.3 51 472-522 135-185 (194)
150 PF13094 CENP-Q: CENP-Q, a CEN 52.7 1.2E+02 0.0027 29.9 10.1 77 444-520 1-80 (160)
151 COG4962 CpaF Flp pilus assembl 52.7 7.2 0.00016 43.7 1.5 28 193-221 164-191 (355)
152 PRK11192 ATP-dependent RNA hel 52.6 6 0.00013 44.9 0.9 25 194-220 31-55 (434)
153 PHA02544 44 clamp loader, smal 52.0 6 0.00013 42.8 0.8 22 200-221 39-61 (316)
154 PRK13900 type IV secretion sys 51.6 5.9 0.00013 44.1 0.6 28 192-220 150-177 (332)
155 PF03961 DUF342: Protein of un 51.4 79 0.0017 36.6 9.8 88 49-136 330-422 (451)
156 PRK04837 ATP-dependent RNA hel 50.7 6.5 0.00014 44.6 0.8 25 194-220 38-62 (423)
157 PRK13764 ATPase; Provisional 50.7 6 0.00013 47.4 0.6 20 202-221 256-275 (602)
158 PRK13729 conjugal transfer pil 50.6 60 0.0013 38.0 8.4 48 471-518 73-120 (475)
159 COG1579 Zn-ribbon protein, pos 50.2 1.9E+02 0.004 31.1 11.4 40 482-521 32-71 (239)
160 PRK14722 flhF flagellar biosyn 50.1 6.8 0.00015 44.4 0.9 19 203-221 137-155 (374)
161 PRK10590 ATP-dependent RNA hel 49.7 7.7 0.00017 44.7 1.2 25 194-220 31-55 (456)
162 PRK04195 replication factor C 49.6 7.9 0.00017 45.0 1.3 36 185-220 20-56 (482)
163 PF05496 RuvB_N: Holliday junc 49.4 9.7 0.00021 40.4 1.8 42 178-219 23-66 (233)
164 PF03215 Rad17: Rad17 cell cyc 49.3 7 0.00015 46.2 0.8 31 190-220 30-62 (519)
165 KOG0354 DEAD-box like helicase 49.0 9.5 0.00021 46.6 1.8 43 175-220 44-93 (746)
166 TIGR00348 hsdR type I site-spe 49.0 8.6 0.00019 46.7 1.5 30 192-222 248-282 (667)
167 TIGR02881 spore_V_K stage V sp 48.5 7.2 0.00016 41.4 0.7 17 204-220 43-59 (261)
168 PRK06547 hypothetical protein; 48.4 8.6 0.00019 38.6 1.2 26 195-220 7-32 (172)
169 cd01383 MYSc_type_VIII Myosin 48.3 9.3 0.0002 46.6 1.6 36 185-220 73-109 (677)
170 PRK05022 anaerobic nitric oxid 48.3 13 0.00027 43.7 2.7 120 173-314 185-309 (509)
171 PF04849 HAP1_N: HAP1 N-termin 47.7 82 0.0018 34.9 8.5 35 49-83 156-190 (306)
172 smart00242 MYSc Myosin. Large 47.5 9.7 0.00021 46.4 1.6 36 185-220 73-109 (677)
173 COG1219 ClpX ATP-dependent pro 47.2 8.4 0.00018 42.9 0.9 17 203-219 97-113 (408)
174 cd01384 MYSc_type_XI Myosin mo 47.2 9.9 0.00022 46.3 1.7 36 185-220 69-105 (674)
175 PRK10536 hypothetical protein; 47.1 8.7 0.00019 41.5 1.0 41 171-220 51-91 (262)
176 KOG1514 Origin recognition com 47.1 25 0.00053 42.8 4.8 41 193-243 410-452 (767)
177 PF09726 Macoilin: Transmembra 46.8 1.1E+02 0.0025 37.6 10.5 34 499-532 492-525 (697)
178 PF08317 Spc7: Spc7 kinetochor 46.8 1.2E+02 0.0027 33.5 10.0 48 473-520 215-262 (325)
179 cd01385 MYSc_type_IX Myosin mo 46.4 11 0.00023 46.2 1.8 36 185-220 75-111 (692)
180 cd01378 MYSc_type_I Myosin mot 46.1 11 0.00023 46.0 1.7 36 185-220 67-103 (674)
181 PHA00729 NTP-binding motif con 45.9 9.8 0.00021 40.2 1.2 28 194-221 8-35 (226)
182 cd01387 MYSc_type_XV Myosin mo 45.8 11 0.00024 45.9 1.7 36 185-220 68-104 (677)
183 PRK11637 AmiB activator; Provi 45.5 1.4E+02 0.0031 34.1 10.6 41 480-520 81-121 (428)
184 COG1223 Predicted ATPase (AAA+ 45.4 8.9 0.00019 41.6 0.8 17 204-220 152-168 (368)
185 cd01381 MYSc_type_VII Myosin m 45.3 12 0.00025 45.7 1.8 36 185-220 67-103 (671)
186 PRK11637 AmiB activator; Provi 45.3 1.6E+02 0.0035 33.7 11.0 34 487-520 81-114 (428)
187 PRK11448 hsdR type I restricti 45.2 7 0.00015 50.2 -0.0 34 188-222 417-452 (1123)
188 PRK00080 ruvB Holliday junctio 45.2 8.3 0.00018 42.3 0.6 39 183-221 29-69 (328)
189 COG3074 Uncharacterized protei 44.7 1.5E+02 0.0032 26.0 7.8 44 54-107 19-62 (79)
190 PRK10865 protein disaggregatio 44.5 13 0.00027 46.6 2.0 45 172-220 565-615 (857)
191 TIGR00614 recQ_fam ATP-depende 44.4 11 0.00023 43.7 1.3 26 193-220 18-43 (470)
192 PF05729 NACHT: NACHT domain 44.3 10 0.00022 36.0 0.9 16 205-220 2-17 (166)
193 cd01382 MYSc_type_VI Myosin mo 44.2 11 0.00024 46.2 1.5 35 186-220 73-108 (717)
194 COG2256 MGS1 ATPase related to 44.1 11 0.00024 43.1 1.2 43 173-219 22-64 (436)
195 cd01120 RecA-like_NTPases RecA 44.0 9.1 0.0002 35.9 0.6 15 206-220 2-16 (165)
196 smart00763 AAA_PrkA PrkA AAA d 43.9 20 0.00042 40.6 3.2 46 171-220 45-95 (361)
197 PLN03025 replication factor C 43.6 9.2 0.0002 41.9 0.6 17 205-221 36-52 (319)
198 PRK13341 recombination factor 43.3 9.7 0.00021 46.8 0.8 45 173-221 26-70 (725)
199 cd01380 MYSc_type_V Myosin mot 43.3 12 0.00027 45.7 1.6 36 185-220 67-103 (691)
200 COG1222 RPT1 ATP-dependent 26S 43.0 14 0.00031 41.7 1.9 74 173-246 149-245 (406)
201 PRK09039 hypothetical protein; 42.8 1.9E+02 0.0042 32.4 10.8 47 476-522 139-185 (343)
202 PRK00440 rfc replication facto 42.6 9.7 0.00021 40.8 0.6 21 200-220 35-55 (319)
203 PRK01297 ATP-dependent RNA hel 42.4 9.8 0.00021 44.0 0.6 26 193-220 116-141 (475)
204 PRK00131 aroK shikimate kinase 42.4 11 0.00024 36.3 0.9 17 204-220 5-21 (175)
205 PF00735 Septin: Septin; Inte 42.3 9.3 0.0002 41.5 0.4 21 200-220 1-21 (281)
206 PF10481 CENP-F_N: Cenp-F N-te 42.0 94 0.002 33.9 7.6 30 96-125 160-189 (307)
207 PF15290 Syntaphilin: Golgi-lo 42.0 1.9E+02 0.0041 31.7 9.9 12 508-519 107-118 (305)
208 PRK05703 flhF flagellar biosyn 41.6 11 0.00023 43.5 0.7 17 205-221 223-239 (424)
209 PF04102 SlyX: SlyX; InterPro 41.6 1.5E+02 0.0031 25.6 7.5 33 483-515 13-45 (69)
210 TIGR01618 phage_P_loop phage n 41.2 11 0.00024 39.7 0.6 21 203-223 12-32 (220)
211 PF08614 ATG16: Autophagy prot 41.1 64 0.0014 33.0 6.2 70 53-125 116-185 (194)
212 PRK11634 ATP-dependent RNA hel 40.7 12 0.00025 45.4 0.8 25 194-220 36-60 (629)
213 PRK11889 flhF flagellar biosyn 40.7 14 0.0003 42.5 1.4 18 204-221 242-259 (436)
214 PRK00771 signal recognition pa 40.7 17 0.00037 42.0 2.2 20 201-220 93-112 (437)
215 PF09726 Macoilin: Transmembra 40.7 2E+02 0.0044 35.5 11.3 49 483-531 462-510 (697)
216 PF04728 LPP: Lipoprotein leuc 40.4 1E+02 0.0023 25.8 6.1 29 53-81 3-31 (56)
217 PF12775 AAA_7: P-loop contain 40.3 11 0.00024 40.7 0.5 27 193-220 24-50 (272)
218 PRK10884 SH3 domain-containing 40.2 2.4E+02 0.0052 29.5 10.3 31 491-521 121-151 (206)
219 PF06409 NPIP: Nuclear pore co 40.2 3.3E+02 0.0072 29.2 11.1 24 554-577 206-229 (265)
220 cd02021 GntK Gluconate kinase 40.0 11 0.00025 35.8 0.6 15 206-220 2-16 (150)
221 PF08317 Spc7: Spc7 kinetochor 39.9 2.8E+02 0.006 30.8 11.4 16 226-241 8-23 (325)
222 PRK04537 ATP-dependent RNA hel 39.9 13 0.00028 44.4 1.1 25 194-220 39-63 (572)
223 PF06156 DUF972: Protein of un 39.8 1.7E+02 0.0036 27.6 8.2 51 470-520 4-54 (107)
224 KOG0926 DEAH-box RNA helicase 39.8 16 0.00034 45.0 1.7 19 202-220 270-288 (1172)
225 TIGR02237 recomb_radB DNA repa 39.7 16 0.00034 37.0 1.6 18 203-220 12-29 (209)
226 PF02456 Adeno_IVa2: Adenoviru 39.4 13 0.00027 41.4 0.8 16 206-221 90-105 (369)
227 cd01850 CDC_Septin CDC/Septin. 39.3 14 0.0003 40.0 1.1 21 200-220 1-21 (276)
228 PRK13729 conjugal transfer pil 39.1 1.3E+02 0.0029 35.3 8.8 56 466-521 61-116 (475)
229 KOG0736 Peroxisome assembly fa 38.9 30 0.00065 42.6 3.8 22 225-246 785-806 (953)
230 PF13173 AAA_14: AAA domain 38.9 13 0.00028 34.9 0.7 16 205-220 4-19 (128)
231 PLN00206 DEAD-box ATP-dependen 38.8 17 0.00037 42.7 1.9 25 194-220 151-175 (518)
232 PF12718 Tropomyosin_1: Tropom 38.7 2.7E+02 0.0059 27.4 9.9 28 475-502 22-49 (143)
233 PF02534 T4SS-DNA_transf: Type 38.7 21 0.00045 41.1 2.5 18 204-221 45-62 (469)
234 PRK00846 hypothetical protein; 38.6 2.6E+02 0.0057 24.9 8.7 30 485-514 24-53 (77)
235 PHA02653 RNA helicase NPH-II; 38.4 16 0.00035 44.5 1.6 24 194-219 172-195 (675)
236 TIGR01359 UMP_CMP_kin_fam UMP- 38.4 14 0.0003 36.5 0.8 15 206-220 2-16 (183)
237 PF04111 APG6: Autophagy prote 38.3 3.2E+02 0.0069 30.4 11.5 43 473-515 49-91 (314)
238 PRK06995 flhF flagellar biosyn 38.3 13 0.00028 43.6 0.7 18 204-221 257-274 (484)
239 cd01127 TrwB Bacterial conjuga 38.3 13 0.00027 42.5 0.6 18 203-220 42-59 (410)
240 PRK04325 hypothetical protein; 38.3 2.3E+02 0.005 24.8 8.3 22 487-508 22-43 (74)
241 PRK07261 topology modulation p 38.1 14 0.0003 36.9 0.8 15 206-220 3-17 (171)
242 cd01126 TraG_VirD4 The TraG/Tr 37.8 16 0.00035 41.0 1.3 16 206-221 2-17 (384)
243 PF13476 AAA_23: AAA domain; P 37.7 13 0.00028 36.5 0.6 17 204-220 20-36 (202)
244 cd01379 MYSc_type_III Myosin m 37.6 17 0.00037 44.2 1.6 36 185-220 67-103 (653)
245 KOG0953 Mitochondrial RNA heli 37.6 15 0.00033 43.4 1.1 38 205-242 193-236 (700)
246 PF13555 AAA_29: P-loop contai 37.5 13 0.00028 31.5 0.4 15 206-220 26-40 (62)
247 PRK02119 hypothetical protein; 37.3 2.6E+02 0.0057 24.5 8.5 29 487-515 8-36 (73)
248 COG1125 OpuBA ABC-type proline 37.1 14 0.00031 40.1 0.7 59 390-456 145-213 (309)
249 PRK11331 5-methylcytosine-spec 37.0 16 0.00034 42.6 1.1 36 417-456 320-357 (459)
250 cd01123 Rad51_DMC1_radA Rad51_ 36.9 19 0.00041 37.1 1.6 28 193-220 6-36 (235)
251 PF10236 DAP3: Mitochondrial r 36.6 16 0.00036 40.1 1.2 23 199-221 19-41 (309)
252 PRK04328 hypothetical protein; 36.5 19 0.00042 38.1 1.6 27 192-218 9-38 (249)
253 PRK02793 phi X174 lysis protei 36.4 2.5E+02 0.0054 24.5 8.2 26 486-511 20-45 (72)
254 cd01386 MYSc_type_XVIII Myosin 36.3 17 0.00038 44.9 1.4 36 185-220 67-103 (767)
255 COG1419 FlhF Flagellar GTP-bin 36.2 15 0.00033 42.0 0.8 18 203-220 203-220 (407)
256 CHL00081 chlI Mg-protoporyphyr 36.2 10 0.00022 42.6 -0.5 44 170-220 12-55 (350)
257 TIGR03158 cas3_cyano CRISPR-as 36.1 17 0.00036 40.7 1.1 25 196-220 7-31 (357)
258 PF10205 KLRAQ: Predicted coil 36.0 2.3E+02 0.0049 26.7 8.2 19 475-493 34-52 (102)
259 cd02020 CMPK Cytidine monophos 35.6 16 0.00035 34.2 0.8 15 206-220 2-16 (147)
260 TIGR02746 TraC-F-type type-IV 35.3 15 0.00032 45.3 0.6 19 203-221 430-448 (797)
261 PF11932 DUF3450: Protein of u 35.3 1.2E+02 0.0025 32.3 7.3 86 51-139 40-126 (251)
262 PRK00295 hypothetical protein; 35.3 2.6E+02 0.0057 24.1 8.1 8 494-501 11-18 (68)
263 TIGR00602 rad24 checkpoint pro 35.3 15 0.00033 44.5 0.7 38 184-221 89-128 (637)
264 TIGR01313 therm_gnt_kin carboh 35.3 14 0.0003 35.9 0.3 14 206-219 1-14 (163)
265 cd01428 ADK Adenylate kinase ( 35.2 16 0.00035 36.1 0.8 15 206-220 2-16 (194)
266 PRK08118 topology modulation p 35.2 16 0.00036 36.3 0.8 14 206-219 4-17 (167)
267 PRK04406 hypothetical protein; 35.1 3E+02 0.0065 24.3 8.5 33 486-518 9-41 (75)
268 TIGR01241 FtsH_fam ATP-depende 34.9 15 0.00033 42.8 0.6 51 170-220 50-105 (495)
269 PF06048 DUF927: Domain of unk 34.9 18 0.00039 39.2 1.1 28 192-220 183-210 (286)
270 cd00464 SK Shikimate kinase (S 34.9 17 0.00037 34.5 0.8 16 205-220 1-16 (154)
271 TIGR00376 DNA helicase, putati 34.8 17 0.00037 44.1 1.0 17 205-221 175-191 (637)
272 KOG4005 Transcription factor X 34.8 1.9E+02 0.0041 31.0 8.4 39 481-519 97-135 (292)
273 PRK11057 ATP-dependent DNA hel 34.8 17 0.00036 43.7 0.9 25 194-220 33-57 (607)
274 PRK10416 signal recognition pa 34.7 22 0.00048 39.4 1.8 18 203-220 114-131 (318)
275 TIGR02322 phosphon_PhnN phosph 34.3 16 0.00035 36.0 0.6 16 205-220 3-18 (179)
276 COG0630 VirB11 Type IV secreto 34.3 15 0.00033 40.5 0.4 19 203-221 143-161 (312)
277 PRK00736 hypothetical protein; 34.2 2.8E+02 0.006 23.9 8.0 23 489-511 20-42 (68)
278 TIGR00064 ftsY signal recognit 34.0 18 0.0004 39.0 1.0 17 205-221 74-90 (272)
279 TIGR01389 recQ ATP-dependent D 33.9 19 0.00041 42.9 1.2 26 193-220 20-45 (591)
280 KOG0804 Cytoplasmic Zn-finger 33.8 3.3E+02 0.0071 31.9 10.7 13 227-239 190-202 (493)
281 smart00787 Spc7 Spc7 kinetocho 33.6 2.7E+02 0.0058 31.0 9.9 14 302-315 71-84 (312)
282 TIGR00618 sbcc exonuclease Sbc 33.4 41 0.00088 43.1 4.1 17 204-220 27-43 (1042)
283 cd01983 Fer4_NifH The Fer4_Nif 33.4 18 0.00039 30.6 0.7 15 206-220 2-16 (99)
284 TIGR02640 gas_vesic_GvpN gas v 33.2 20 0.00043 38.2 1.1 25 194-220 14-38 (262)
285 KOG3859 Septins (P-loop GTPase 33.1 20 0.00044 39.2 1.1 25 196-220 35-59 (406)
286 PRK12726 flagellar biosynthesi 33.1 18 0.00039 41.4 0.8 19 203-221 206-224 (407)
287 PF14193 DUF4315: Domain of un 33.1 1.6E+02 0.0035 26.6 6.6 36 502-537 15-50 (83)
288 COG4372 Uncharacterized protei 32.8 6.9E+02 0.015 28.8 12.7 53 384-448 8-67 (499)
289 PRK08233 hypothetical protein; 32.7 18 0.0004 35.3 0.7 16 205-220 5-20 (182)
290 TIGR02788 VirB11 P-type DNA tr 32.7 19 0.00042 39.4 0.9 29 191-220 133-161 (308)
291 PF01486 K-box: K-box region; 32.5 3.9E+02 0.0084 24.3 9.4 37 50-86 9-45 (100)
292 PRK10820 DNA-binding transcrip 32.4 18 0.00039 42.6 0.7 123 170-314 199-326 (520)
293 PRK14721 flhF flagellar biosyn 32.4 19 0.00041 41.5 0.8 18 203-220 191-208 (420)
294 PRK11034 clpA ATP-dependent Cl 32.3 24 0.00052 43.7 1.7 18 203-220 488-505 (758)
295 PRK06067 flagellar accessory p 32.3 25 0.00055 36.4 1.7 29 192-220 11-42 (234)
296 TIGR03744 traC_PFL_4706 conjug 32.2 17 0.00038 45.7 0.5 20 202-221 474-493 (893)
297 PF02183 HALZ: Homeobox associ 31.9 89 0.0019 24.9 4.3 38 90-127 4-41 (45)
298 PF07693 KAP_NTPase: KAP famil 31.8 47 0.001 35.8 3.7 20 201-220 18-37 (325)
299 TIGR01613 primase_Cterm phage/ 31.8 20 0.00043 39.0 0.8 27 202-239 75-101 (304)
300 PF11932 DUF3450: Protein of u 31.7 3.2E+02 0.007 29.0 10.0 40 481-520 56-95 (251)
301 PRK10917 ATP-dependent DNA hel 31.6 26 0.00056 42.8 1.8 40 179-221 261-300 (681)
302 PF00485 PRK: Phosphoribulokin 31.6 18 0.00038 36.6 0.4 15 206-220 2-16 (194)
303 TIGR02902 spore_lonB ATP-depen 31.6 20 0.00043 42.5 0.8 42 172-220 62-103 (531)
304 PRK11664 ATP-dependent RNA hel 31.5 21 0.00045 44.6 1.0 32 187-220 6-37 (812)
305 cd02023 UMPK Uridine monophosp 31.5 18 0.00039 36.4 0.5 15 206-220 2-16 (198)
306 PF00261 Tropomyosin: Tropomyo 31.5 3.9E+02 0.0084 28.2 10.4 41 481-521 176-216 (237)
307 PRK06217 hypothetical protein; 31.4 20 0.00043 35.8 0.7 15 206-220 4-18 (183)
308 CHL00181 cbbX CbbX; Provisiona 31.4 19 0.00042 39.1 0.7 15 206-220 62-76 (287)
309 TIGR00929 VirB4_CagE type IV s 31.4 18 0.00039 44.4 0.4 18 203-220 434-451 (785)
310 TIGR02880 cbbX_cfxQ probable R 31.3 19 0.00041 39.0 0.5 15 206-220 61-75 (284)
311 KOG0330 ATP-dependent RNA heli 31.3 27 0.00059 39.8 1.7 26 193-220 90-115 (476)
312 PRK14723 flhF flagellar biosyn 31.2 21 0.00045 44.1 1.0 18 204-221 186-203 (767)
313 PHA01747 putative ATP-dependen 31.1 26 0.00056 39.9 1.6 30 191-220 178-207 (425)
314 PF11559 ADIP: Afadin- and alp 31.0 4.7E+02 0.01 25.4 10.3 40 482-521 74-113 (151)
315 PF02403 Seryl_tRNA_N: Seryl-t 30.9 3.2E+02 0.007 24.9 8.6 61 53-113 36-96 (108)
316 PF14197 Cep57_CLD_2: Centroso 30.9 3.6E+02 0.0077 23.4 8.3 50 471-520 16-65 (69)
317 TIGR02894 DNA_bind_RsfA transc 30.8 3.4E+02 0.0073 27.5 9.1 14 385-398 30-43 (161)
318 PHA02244 ATPase-like protein 30.8 27 0.0006 39.7 1.7 19 200-220 118-136 (383)
319 PF08298 AAA_PrkA: PrkA AAA do 30.8 61 0.0013 36.7 4.4 61 175-239 61-142 (358)
320 TIGR03819 heli_sec_ATPase heli 30.7 22 0.00048 39.7 1.0 28 192-220 168-195 (340)
321 PRK14974 cell division protein 30.7 24 0.00051 39.5 1.2 18 203-220 140-157 (336)
322 PTZ00110 helicase; Provisional 30.7 20 0.00044 42.4 0.7 25 194-220 160-184 (545)
323 PRK13169 DNA replication intia 30.5 2.7E+02 0.0059 26.4 8.0 51 470-520 4-54 (110)
324 COG3598 RepA RecA-family ATPas 30.4 25 0.00053 39.4 1.2 79 176-265 62-143 (402)
325 PRK06696 uridine kinase; Valid 30.4 31 0.00066 35.7 1.9 21 200-220 19-39 (223)
326 COG5019 CDC3 Septin family pro 30.2 26 0.00056 39.6 1.4 20 200-219 20-39 (373)
327 PLN00020 ribulose bisphosphate 30.2 26 0.00056 40.0 1.4 52 169-220 109-165 (413)
328 cd00820 PEPCK_HprK Phosphoenol 30.2 23 0.00049 33.2 0.8 17 204-220 16-32 (107)
329 PRK14531 adenylate kinase; Pro 30.1 23 0.00049 35.5 0.8 15 205-219 4-18 (183)
330 TIGR02173 cyt_kin_arch cytidyl 30.0 22 0.00047 34.4 0.7 16 205-220 2-17 (171)
331 PTZ00014 myosin-A; Provisional 29.8 28 0.00061 43.4 1.8 35 186-220 165-200 (821)
332 cd01124 KaiC KaiC is a circadi 29.8 24 0.00051 34.7 0.9 15 206-220 2-16 (187)
333 PF10412 TrwB_AAD_bind: Type I 29.6 18 0.0004 40.9 0.1 17 204-220 16-32 (386)
334 TIGR03817 DECH_helic helicase/ 29.4 23 0.00049 43.7 0.9 26 193-220 43-68 (742)
335 PRK13767 ATP-dependent helicas 29.3 23 0.00049 44.6 0.8 24 195-220 41-64 (876)
336 PF04111 APG6: Autophagy prote 29.2 2.6E+02 0.0055 31.1 8.9 39 480-518 49-87 (314)
337 TIGR01360 aden_kin_iso1 adenyl 29.1 24 0.00053 34.6 0.9 16 205-220 5-20 (188)
338 TIGR00231 small_GTP small GTP- 29.0 22 0.00047 32.5 0.5 15 206-220 4-18 (161)
339 KOG0250 DNA repair protein RAD 29.0 6.3E+02 0.014 32.7 12.8 20 201-221 61-80 (1074)
340 PRK05580 primosome assembly pr 28.8 24 0.00052 43.0 0.9 38 178-221 143-180 (679)
341 TIGR02639 ClpA ATP-dependent C 28.8 27 0.00059 42.9 1.4 17 204-220 485-501 (731)
342 PRK09361 radB DNA repair and r 28.8 32 0.00069 35.3 1.7 29 192-220 9-40 (225)
343 TIGR02903 spore_lon_C ATP-depe 28.7 26 0.00055 42.4 1.1 42 172-220 151-192 (615)
344 TIGR03689 pup_AAA proteasome A 28.6 23 0.0005 41.8 0.7 16 205-220 218-233 (512)
345 KOG2077 JNK/SAPK-associated pr 28.6 1.6E+02 0.0036 35.1 7.3 37 89-125 52-88 (832)
346 PRK14532 adenylate kinase; Pro 28.6 26 0.00057 34.8 1.0 15 205-219 2-16 (188)
347 PF12325 TMF_TATA_bd: TATA ele 28.5 1.5E+02 0.0032 28.5 6.0 23 55-77 25-47 (120)
348 cd01394 radB RadB. The archaea 28.4 32 0.0007 35.0 1.7 28 193-220 6-36 (218)
349 KOG0726 26S proteasome regulat 28.4 47 0.001 36.8 2.9 43 205-247 221-280 (440)
350 PF08477 Miro: Miro-like prote 28.2 21 0.00046 32.2 0.3 15 206-220 2-16 (119)
351 PF07106 TBPIP: Tat binding pr 28.2 3.6E+02 0.0077 26.8 9.0 50 471-520 83-134 (169)
352 PRK06762 hypothetical protein; 28.1 26 0.00055 34.1 0.8 15 205-219 4-18 (166)
353 PRK12724 flagellar biosynthesi 28.1 24 0.00052 40.8 0.7 19 203-221 223-241 (432)
354 PF06657 Cep57_MT_bd: Centroso 28.0 4.3E+02 0.0093 23.5 8.9 38 43-80 7-44 (79)
355 PRK04040 adenylate kinase; Pro 28.0 25 0.00055 35.7 0.8 16 205-220 4-19 (188)
356 KOG0730 AAA+-type ATPase [Post 28.0 32 0.00069 41.6 1.7 43 204-246 469-528 (693)
357 PRK01172 ski2-like helicase; P 28.0 27 0.00058 42.4 1.1 22 196-219 32-53 (674)
358 cd02025 PanK Pantothenate kina 27.9 18 0.00039 37.7 -0.3 13 208-220 4-16 (220)
359 CHL00195 ycf46 Ycf46; Provisio 27.8 24 0.00052 41.5 0.7 17 204-220 260-276 (489)
360 PRK14729 miaA tRNA delta(2)-is 27.7 27 0.00059 38.4 1.0 14 205-218 6-19 (300)
361 PF15290 Syntaphilin: Golgi-lo 27.6 2.8E+02 0.0062 30.5 8.4 29 472-500 59-87 (305)
362 TIGR00643 recG ATP-dependent D 27.6 28 0.0006 42.0 1.2 39 179-220 235-273 (630)
363 KOG0977 Nuclear envelope prote 27.6 2E+02 0.0044 34.4 8.0 69 51-129 146-214 (546)
364 TIGR03263 guanyl_kin guanylate 27.5 25 0.00055 34.5 0.7 16 205-220 3-18 (180)
365 PRK00300 gmk guanylate kinase; 27.4 26 0.00057 35.2 0.8 17 204-220 6-22 (205)
366 KOG2129 Uncharacterized conser 27.4 3.1E+02 0.0066 31.8 8.9 80 51-136 251-348 (552)
367 PF04420 CHD5: CHD5-like prote 27.4 2.6E+02 0.0055 28.0 7.8 79 57-135 37-118 (161)
368 PF14257 DUF4349: Domain of un 27.3 4.8E+02 0.01 27.7 10.4 22 421-444 94-115 (262)
369 PF10146 zf-C4H2: Zinc finger- 27.3 2.5E+02 0.0054 29.9 8.1 64 54-124 2-65 (230)
370 KOG1803 DNA helicase [Replicat 27.3 24 0.00053 42.1 0.6 18 204-221 202-219 (649)
371 COG1126 GlnQ ABC-type polar am 27.3 28 0.00062 36.9 1.0 14 207-220 32-45 (240)
372 TIGR03345 VI_ClpV1 type VI sec 27.3 34 0.00073 43.0 1.8 17 204-220 597-613 (852)
373 KOG0729 26S proteasome regulat 27.2 31 0.00067 37.7 1.3 40 205-244 213-269 (435)
374 CHL00176 ftsH cell division pr 27.1 25 0.00053 42.7 0.6 46 171-220 179-233 (638)
375 PRK10246 exonuclease subunit S 27.1 64 0.0014 41.5 4.3 16 204-219 31-46 (1047)
376 PF10779 XhlA: Haemolysin XhlA 27.0 3.4E+02 0.0073 23.3 7.4 42 473-514 5-46 (71)
377 PRK14527 adenylate kinase; Pro 26.9 15 0.00033 36.9 -1.1 35 204-238 7-41 (191)
378 KOG1532 GTPase XAB1, interacts 26.9 31 0.00068 37.8 1.2 28 202-239 18-45 (366)
379 TIGR01650 PD_CobS cobaltochela 26.8 25 0.00055 39.2 0.6 41 178-220 39-81 (327)
380 cd01393 recA_like RecA is a b 26.6 36 0.00078 34.7 1.7 29 192-220 5-36 (226)
381 cd01853 Toc34_like Toc34-like 26.6 24 0.00052 37.7 0.3 40 179-220 9-48 (249)
382 PF15188 CCDC-167: Coiled-coil 26.6 3.5E+02 0.0077 24.6 7.6 53 474-526 5-67 (85)
383 PRK13873 conjugal transfer ATP 26.2 27 0.00058 43.5 0.7 16 205-220 443-458 (811)
384 COG1579 Zn-ribbon protein, pos 26.1 4.1E+02 0.009 28.6 9.4 34 485-518 107-140 (239)
385 PF00158 Sigma54_activat: Sigm 26.1 28 0.0006 34.9 0.7 99 200-315 19-122 (168)
386 PLN02200 adenylate kinase fami 26.1 13 0.00029 39.1 -1.7 36 204-239 44-79 (234)
387 PRK15429 formate hydrogenlyase 26.0 29 0.00062 42.3 0.9 121 172-314 373-498 (686)
388 PRK12727 flagellar biosynthesi 25.9 28 0.00061 41.4 0.8 18 204-221 351-368 (559)
389 PRK10867 signal recognition pa 25.8 33 0.00071 39.7 1.3 19 203-221 100-118 (433)
390 cd03274 ABC_SMC4_euk Eukaryoti 25.8 29 0.00064 35.8 0.8 16 205-220 27-42 (212)
391 TIGR03881 KaiC_arch_4 KaiC dom 25.7 38 0.00083 34.8 1.7 27 194-220 8-37 (229)
392 PF13851 GAS: Growth-arrest sp 25.7 1.7E+02 0.0038 30.3 6.4 34 89-122 98-131 (201)
393 COG4942 Membrane-bound metallo 25.6 4.8E+02 0.01 30.3 10.3 41 480-520 65-105 (420)
394 PRK10078 ribose 1,5-bisphospho 25.5 28 0.00061 34.8 0.6 16 205-220 4-19 (186)
395 cd03240 ABC_Rad50 The catalyti 25.4 29 0.00064 35.5 0.7 17 205-221 24-40 (204)
396 PF10923 DUF2791: P-loop Domai 25.3 34 0.00073 39.5 1.2 28 193-220 39-66 (416)
397 cd03272 ABC_SMC3_euk Eukaryoti 25.3 33 0.0007 35.6 1.0 16 205-220 25-40 (243)
398 TIGR03238 dnd_assoc_3 dnd syst 25.2 32 0.00069 40.5 1.0 18 204-221 33-50 (504)
399 PF04548 AIG1: AIG1 family; I 25.2 26 0.00056 36.1 0.3 16 205-220 2-17 (212)
400 COG4096 HsdR Type I site-speci 25.2 40 0.00088 41.8 1.9 31 191-222 174-204 (875)
401 TIGR02397 dnaX_nterm DNA polym 25.1 36 0.00078 37.2 1.4 21 200-220 32-53 (355)
402 COG3842 PotA ABC-type spermidi 24.9 29 0.00062 39.2 0.6 13 208-220 36-48 (352)
403 KOG0739 AAA+-type ATPase [Post 24.8 32 0.0007 38.2 0.9 75 172-246 130-226 (439)
404 COG1136 SalX ABC-type antimicr 24.8 28 0.00061 36.9 0.5 15 206-220 34-48 (226)
405 smart00488 DEXDc2 DEAD-like he 24.8 31 0.00067 37.5 0.8 37 180-221 9-45 (289)
406 smart00489 DEXDc3 DEAD-like he 24.8 31 0.00067 37.5 0.8 37 180-221 9-45 (289)
407 PF08232 Striatin: Striatin fa 24.8 5.2E+02 0.011 25.1 9.1 45 480-524 24-68 (134)
408 cd03279 ABC_sbcCD SbcCD and ot 24.8 32 0.00069 35.3 0.8 19 203-221 28-46 (213)
409 PF08182 Pedibin: Pedibin/Hym- 24.8 1.4E+02 0.003 22.7 3.8 30 486-515 2-31 (35)
410 PRK14530 adenylate kinase; Pro 24.7 30 0.00066 35.4 0.7 16 205-220 5-20 (215)
411 COG1122 CbiO ABC-type cobalt t 24.7 29 0.00064 36.8 0.6 17 204-220 31-47 (235)
412 COG3879 Uncharacterized protei 24.6 5.4E+02 0.012 27.9 9.9 12 439-450 25-36 (247)
413 cd02027 APSK Adenosine 5'-phos 24.6 31 0.00067 33.5 0.7 15 206-220 2-16 (149)
414 PRK05342 clpX ATP-dependent pr 24.5 32 0.00069 39.5 0.9 17 204-220 109-125 (412)
415 PRK14961 DNA polymerase III su 24.4 37 0.00081 38.0 1.4 18 203-220 38-55 (363)
416 PF06156 DUF972: Protein of un 24.4 3.4E+02 0.0074 25.5 7.5 52 50-111 5-56 (107)
417 TIGR02767 TraG-Ti Ti-type conj 24.4 35 0.00075 41.4 1.1 17 204-220 212-228 (623)
418 PRK13721 conjugal transfer ATP 24.3 30 0.00065 43.3 0.7 18 203-220 449-466 (844)
419 PF07888 CALCOCO1: Calcium bin 24.3 7.6E+02 0.016 29.8 11.9 12 353-364 91-102 (546)
420 PRK14963 DNA polymerase III su 24.3 27 0.0006 41.1 0.3 42 173-220 12-53 (504)
421 TIGR01243 CDC48 AAA family ATP 24.2 33 0.00071 42.2 0.9 17 204-220 213-229 (733)
422 TIGR00382 clpX endopeptidase C 24.1 32 0.00069 39.6 0.7 17 204-220 117-133 (413)
423 TIGR01587 cas3_core CRISPR-ass 24.1 32 0.0007 37.8 0.8 15 206-220 2-16 (358)
424 KOG0745 Putative ATP-dependent 24.0 36 0.00079 39.5 1.2 14 206-219 229-242 (564)
425 PRK03839 putative kinase; Prov 24.0 32 0.00069 34.0 0.7 14 206-219 3-16 (180)
426 TIGR01425 SRP54_euk signal rec 23.9 35 0.00075 39.5 1.0 21 201-221 98-118 (429)
427 PRK06851 hypothetical protein; 23.9 50 0.0011 37.5 2.2 28 193-220 20-47 (367)
428 TIGR01351 adk adenylate kinase 23.9 34 0.00073 35.0 0.8 34 206-239 2-35 (210)
429 PF14532 Sigma54_activ_2: Sigm 23.8 30 0.00065 32.9 0.4 27 286-312 69-95 (138)
430 PRK13889 conjugal transfer rel 23.8 32 0.0007 43.8 0.8 28 193-221 353-380 (988)
431 TIGR03877 thermo_KaiC_1 KaiC d 23.8 44 0.00096 34.9 1.7 26 193-218 8-36 (237)
432 TIGR00959 ffh signal recogniti 23.7 37 0.00079 39.3 1.1 19 203-221 99-117 (428)
433 PF12958 DUF3847: Protein of u 23.7 4.1E+02 0.0088 24.2 7.5 44 484-530 4-47 (86)
434 TIGR01074 rep ATP-dependent DN 23.7 33 0.00071 41.4 0.8 20 203-222 14-33 (664)
435 PRK13853 type IV secretion sys 23.7 29 0.00063 43.1 0.3 18 203-220 426-443 (789)
436 cd00071 GMPK Guanosine monopho 23.6 31 0.00067 33.1 0.5 15 206-220 2-16 (137)
437 PF10234 Cluap1: Clusterin-ass 23.6 5E+02 0.011 28.4 9.6 50 478-527 194-243 (267)
438 cd03115 SRP The signal recogni 23.6 34 0.00073 33.6 0.7 15 206-220 3-17 (173)
439 COG4026 Uncharacterized protei 23.6 3.7E+02 0.0081 28.7 8.2 21 57-77 139-159 (290)
440 PF00931 NB-ARC: NB-ARC domain 23.4 36 0.00078 35.8 1.0 28 193-220 7-36 (287)
441 PF08537 NBP1: Fungal Nap bind 23.4 8.3E+02 0.018 27.5 11.2 12 577-588 252-263 (323)
442 TIGR00235 udk uridine kinase. 23.3 31 0.00067 35.2 0.4 17 204-220 7-23 (207)
443 PRK05057 aroK shikimate kinase 23.3 35 0.00075 34.0 0.7 17 204-220 5-21 (172)
444 KOG0652 26S proteasome regulat 23.3 36 0.00079 37.1 0.9 12 206-217 208-219 (424)
445 COG3839 MalK ABC-type sugar tr 23.1 34 0.00073 38.4 0.7 15 206-220 32-46 (338)
446 COG4026 Uncharacterized protei 23.0 6.4E+02 0.014 27.0 9.8 28 480-507 148-175 (290)
447 COG4942 Membrane-bound metallo 23.0 6.1E+02 0.013 29.5 10.5 49 470-518 62-110 (420)
448 smart00787 Spc7 Spc7 kinetocho 23.0 7.7E+02 0.017 27.5 11.1 48 474-521 211-258 (312)
449 COG3829 RocR Transcriptional r 22.9 41 0.0009 39.9 1.4 127 169-323 239-376 (560)
450 PF12774 AAA_6: Hydrolytic ATP 22.9 32 0.00069 36.4 0.4 39 204-242 33-82 (231)
451 COG1382 GimC Prefoldin, chaper 22.9 3.3E+02 0.0071 26.3 7.1 37 483-519 72-108 (119)
452 TIGR02915 PEP_resp_reg putativ 22.9 89 0.0019 35.5 4.0 31 284-314 231-261 (445)
453 PRK14951 DNA polymerase III su 22.9 37 0.00079 41.1 1.0 41 173-220 14-55 (618)
454 PF13094 CENP-Q: CENP-Q, a CEN 22.7 5.9E+02 0.013 25.0 9.4 55 466-520 19-73 (160)
455 PRK15422 septal ring assembly 22.6 4E+02 0.0086 24.0 7.0 26 55-80 6-31 (79)
456 COG1340 Uncharacterized archae 22.6 2.6E+02 0.0056 31.0 7.2 74 49-125 2-75 (294)
457 PRK13169 DNA replication intia 22.6 3.8E+02 0.0081 25.5 7.4 50 49-108 4-53 (110)
458 TIGR02759 TraD_Ftype type IV c 22.5 34 0.00073 41.0 0.5 16 205-220 178-193 (566)
459 PF06810 Phage_GP20: Phage min 22.4 3.5E+02 0.0075 27.0 7.6 64 53-116 20-83 (155)
460 PRK13700 conjugal transfer pro 22.3 32 0.0007 42.2 0.4 48 206-268 188-237 (732)
461 PLN02796 D-glycerate 3-kinase 22.2 23 0.00051 39.8 -0.7 15 206-220 103-117 (347)
462 KOG0804 Cytoplasmic Zn-finger 22.2 1.5E+02 0.0032 34.5 5.4 60 51-110 337-401 (493)
463 PRK15455 PrkA family serine pr 22.1 44 0.00096 40.3 1.4 46 171-217 71-117 (644)
464 PRK13891 conjugal transfer pro 22.1 37 0.00079 42.6 0.8 18 203-220 488-505 (852)
465 PF06632 XRCC4: DNA double-str 22.1 9.6E+02 0.021 27.1 11.8 54 482-535 152-205 (342)
466 PF05529 Bap31: B-cell recepto 22.1 3.6E+02 0.0079 27.3 7.9 15 506-520 158-172 (192)
467 PF06745 KaiC: KaiC; InterPro 22.0 39 0.00085 34.7 0.9 26 194-219 7-35 (226)
468 PF01745 IPT: Isopentenyl tran 22.0 34 0.00073 36.3 0.4 15 206-220 4-18 (233)
469 KOG0735 AAA+-type ATPase [Post 21.9 39 0.00085 41.4 0.9 21 201-221 699-719 (952)
470 PF06637 PV-1: PV-1 protein (P 21.8 1.2E+03 0.027 26.9 12.2 11 404-414 241-251 (442)
471 PRK00279 adk adenylate kinase; 21.8 39 0.00086 34.6 0.8 15 205-219 2-16 (215)
472 PF00025 Arf: ADP-ribosylation 21.8 39 0.00085 33.4 0.8 27 194-220 4-31 (175)
473 TIGR00390 hslU ATP-dependent p 21.8 38 0.00083 39.2 0.8 17 204-220 48-64 (441)
474 cd01858 NGP_1 NGP-1. Autoanti 21.7 40 0.00086 32.6 0.8 20 201-220 100-119 (157)
475 COG0606 Predicted ATPase with 21.7 41 0.00089 39.4 1.0 40 194-238 191-231 (490)
476 PRK05480 uridine/cytidine kina 21.6 44 0.00094 34.0 1.1 18 203-220 6-23 (209)
477 PHA02530 pseT polynucleotide k 21.6 40 0.00086 36.2 0.8 15 205-219 4-18 (300)
478 PF15372 DUF4600: Domain of un 21.5 7.7E+02 0.017 24.1 10.8 69 468-537 9-92 (129)
479 TIGR01547 phage_term_2 phage t 21.5 39 0.00084 38.0 0.8 17 205-221 3-19 (396)
480 COG0324 MiaA tRNA delta(2)-iso 21.4 42 0.00092 37.2 1.0 16 205-220 5-20 (308)
481 PRK09039 hypothetical protein; 21.4 7E+02 0.015 28.0 10.6 39 482-520 138-176 (343)
482 cd02019 NK Nucleoside/nucleoti 21.3 37 0.00081 28.6 0.5 15 206-220 2-16 (69)
483 PRK13830 conjugal transfer pro 21.3 34 0.00073 42.8 0.2 20 201-220 454-473 (818)
484 PRK04182 cytidylate kinase; Pr 21.3 41 0.00089 32.7 0.8 16 205-220 2-17 (180)
485 PLN02678 seryl-tRNA synthetase 21.3 3.8E+02 0.0082 31.4 8.7 63 51-113 38-100 (448)
486 TIGR01970 DEAH_box_HrpB ATP-de 21.3 38 0.00083 42.3 0.7 18 203-220 17-34 (819)
487 PF01926 MMR_HSR1: 50S ribosom 21.2 34 0.00074 31.0 0.2 15 206-220 2-16 (116)
488 TIGR01054 rgy reverse gyrase. 21.2 40 0.00086 43.8 0.8 24 194-219 86-109 (1171)
489 PF00261 Tropomyosin: Tropomyo 21.2 9.8E+02 0.021 25.2 11.4 33 488-520 155-187 (237)
490 COG0467 RAD55 RecA-superfamily 21.1 52 0.0011 34.8 1.6 16 203-218 23-38 (260)
491 PRK14970 DNA polymerase III su 21.1 46 0.00099 37.0 1.2 21 200-220 35-56 (367)
492 TIGR03783 Bac_Flav_CT_G Bacter 21.1 36 0.00079 42.6 0.5 18 203-220 438-455 (829)
493 PRK00091 miaA tRNA delta(2)-is 21.1 42 0.0009 37.1 0.9 15 205-219 6-20 (307)
494 TIGR01243 CDC48 AAA family ATP 21.0 41 0.00088 41.4 0.9 16 205-220 489-504 (733)
495 TIGR03346 chaperone_ClpB ATP-d 21.0 50 0.0011 41.5 1.6 42 175-220 565-612 (852)
496 TIGR02030 BchI-ChlI magnesium 21.0 32 0.00069 38.5 -0.1 28 193-220 15-42 (337)
497 PF04912 Dynamitin: Dynamitin 21.0 2.5E+02 0.0055 31.8 7.2 58 46-103 87-144 (388)
498 PF06785 UPF0242: Uncharacteri 21.0 6.4E+02 0.014 28.5 9.7 65 463-527 112-180 (401)
499 TIGR02236 recomb_radA DNA repa 21.0 53 0.0011 35.7 1.7 23 195-217 84-109 (310)
500 COG3352 FlaC Putative archaeal 21.0 5.2E+02 0.011 26.0 8.2 88 31-127 57-144 (157)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-93 Score=827.07 Aligned_cols=427 Identities=52% Similarity=0.713 Sum_probs=372.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004310 45 QGPALPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGP-DVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIE 123 (762)
Q Consensus 45 ~~~~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~e 123 (762)
.......-+++..|+.+++.+|.++..|..++..+..+..... .+...+..|......|.+++ +|+.+||+|||+++|
T Consensus 233 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 233 EGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444445566788888888888888888887775543210000 12222555666677777888 888999999999999
Q ss_pred cCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCce----eeecCeeeCCCCChhHHHhccchhhhhhc
Q 004310 124 LKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKK----QFKFDYVFKPEDNQEAVFAQTKPVVTSVL 199 (762)
Q Consensus 124 lkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k----~F~FD~VF~~~~tQ~eVf~~~~plV~svl 199 (762)
+||||||||||||+.+.|.......++.++.. ..+.+.......+ .|.||+||+|.++|++||.++.|+|++||
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~l 389 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ--GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSAL 389 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCc--ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHh
Confidence 99999999999999998887644445544433 3455554443333 49999999999999999999999999999
Q ss_pred cCcceeEEeeccCCCCCccccCC-CCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEG-TPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G-~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~ 278 (762)
||||+||||||||||||||||.| +++++|||||++++||..+.....+|.|.+.++|+|||||.|+|||.+.. ...+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~--~~~k 467 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES--YVGK 467 (670)
T ss_pred cCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc--cccc
Confidence 99999999999999999999999 79999999999999999999888899999999999999999999997653 3568
Q ss_pred ceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEe
Q 004310 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVD 358 (762)
Q Consensus 279 l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVD 358 (762)
+.|+++.+++ ..|+|++.+.|.+.+++..+++.|..+|++++|.+|++|||||+||+|+|.+.+..++..+.|.|+|||
T Consensus 468 ~~I~~~~~~~-~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 468 LEIVDDAEGN-LMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVD 546 (670)
T ss_pred eeEEEcCCCc-eecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEee
Confidence 9999999855 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 359 LAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 359 LAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
||||||++++++.|+|++|+++||+||++||+||.||+.+..||||||||||+||||+|||++||+|||+|||...++.|
T Consensus 547 LAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~E 626 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFE 626 (670)
T ss_pred cccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccCCCccccchhHHHHHHHHHHHHH
Q 004310 439 TLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLK 477 (762)
Q Consensus 439 TLsTLrFAsrak~I~~~p~~~~~~~~~~~~~k~~~e~lk 477 (762)
|+++|+||+|++.++.|+++.+........+..+...++
T Consensus 627 tl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~ 665 (670)
T KOG0239|consen 627 TLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEK 665 (670)
T ss_pred hhhccchHHHhhceecccccccccccchhhhhhhhhhhh
Confidence 999999999999999999999888777766655554443
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-87 Score=783.85 Aligned_cols=334 Identities=43% Similarity=0.667 Sum_probs=302.3
Q ss_pred cCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC-CC--CceeeecCeeeCCCCChhHHHhc-cchhhhhhc
Q 004310 124 LKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS-DS--SKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVL 199 (762)
Q Consensus 124 lkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~-~~--~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svl 199 (762)
-.-||+|+|||||++.+|....+..||.+++. ..++.+... .+ ..+.|+||+||+|+++|++||+. +.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~-~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGI-RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCC-cceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence 34689999999999999998888889988875 344555443 12 37899999999999999999988 799999999
Q ss_pred cCcceeEEeeccCCCCCccccCC--------CCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccC
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEG--------TPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVEN 271 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G--------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~ 271 (762)
.|||||||||||||+||||||+| .+.+.|||||++.+||+.++... .+|.|+|||+|+|||.|+|||++.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999999 57789999999999999988765 589999999999999999999987
Q ss_pred CCCCCccceeeecc----CCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeec-cC
Q 004310 272 SNQPSKKLEIKQAA----EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENL-IN 346 (762)
Q Consensus 272 s~~~~~~l~Ir~~~----~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~-~~ 346 (762)
.... +.+++..++ ..|.+.|.||.++.|.++.|++.+|.+|...|.+++|.||++|||||+||+|+|..... ..
T Consensus 204 ~~~~-~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ 282 (1041)
T KOG0243|consen 204 DTSD-KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPE 282 (1041)
T ss_pred cccc-cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCc
Confidence 5432 667777776 55778899999999999999999999999999999999999999999999999964432 22
Q ss_pred C--ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceee
Q 004310 347 G--QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTL 424 (762)
Q Consensus 347 g--~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~ 424 (762)
| ....|+|+||||||||.++++|+.+.|.+||..||+||++||+||+||.++.+|||||+|||||||||||||..||+
T Consensus 283 geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~ 362 (1041)
T KOG0243|consen 283 GEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTC 362 (1041)
T ss_pred chhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeE
Confidence 2 24679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChHhhHHHHHHHhHhhccccCCCcccc
Q 004310 425 MFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQS 461 (762)
Q Consensus 425 mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~ 461 (762)
||+||||+..+++||++||.||.|||+|+|+|..++.
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 9999999999999999999999999999999988863
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-87 Score=752.70 Aligned_cols=334 Identities=44% Similarity=0.669 Sum_probs=302.0
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC----CCCceeeecCeeeCCCCChhHHHhc-cchhhhhhc
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS----DSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVL 199 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~----~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svl 199 (762)
.-+|+|++||||+...+...+...++.++... ..+.+... ....+.|+||.||+++++|++||+. +.|+|++|+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAH-GRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhcccccccccc-ceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 35799999999999988887777777776653 23333222 2356789999999999999999998 699999999
Q ss_pred cCcceeEEeeccCCCCCccccCCC-CCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEGT-PENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G~-~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~ 278 (762)
+|||+||||||||||||||||.|+ ++..|||||++++||..++.......|.|+|||+|||||.|+|||++.+. +.
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~---~~ 159 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP---KG 159 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc---CC
Confidence 999999999999999999999999 77899999999999999998876668999999999999999999987543 68
Q ss_pred ceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeec-cCC--ceEEEEEE
Q 004310 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENL-ING--QKTKSHLW 355 (762)
Q Consensus 279 l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~-~~g--~~~~SkL~ 355 (762)
+.|+++++.| +||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|+.... ..+ ....|+|+
T Consensus 160 l~lre~p~~G-v~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 160 LELREDPKCG-VYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred ceeeEcCCCc-eEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 9999999766 5799999999999999999999999999999999999999999999999998322 222 45679999
Q ss_pred EEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC-CccCCCCchhhhcccccCCCceeeEEEecCCCCC
Q 004310 356 LVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG-HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSS 434 (762)
Q Consensus 356 LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~-hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~ 434 (762)
|||||||||..+++++|+|++||.+||+||++||+||.||++... ||||||||||+||||||||||||+||+||||+..
T Consensus 239 lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~ 318 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSD 318 (574)
T ss_pred eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhh
Confidence 999999999999999999999999999999999999999999776 9999999999999999999999999999999999
Q ss_pred ChHhhHHHHHHHhHhhccccCCCccccch
Q 004310 435 DLGETLCSLNFASRVRGIESGPARKQSDI 463 (762)
Q Consensus 435 ~~~ETLsTLrFAsrak~I~~~p~~~~~~~ 463 (762)
+++||++||+||+||+.|+|.|.+|....
T Consensus 319 ~~~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 319 NYEETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccCCcc
Confidence 99999999999999999999998886553
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-85 Score=750.95 Aligned_cols=346 Identities=35% Similarity=0.594 Sum_probs=304.2
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC--CCceeeecCeeeCCC-------CChhHHHhc-cchhh
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD--SSKKQFKFDYVFKPE-------DNQEAVFAQ-TKPVV 195 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~--~~~k~F~FD~VF~~~-------~tQ~eVf~~-~~plV 195 (762)
.+|+|.|||||++..|....+.+||.+.++ +..++... .....|+||+.|+.. ++|..||++ +.+++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn---~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGN---TTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCC---ceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 469999999999999999989999988776 33444332 334569999999765 489999998 79999
Q ss_pred hhhccCcceeEEeeccCCCCCccccCCCC--CCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEccccccccccCC
Q 004310 196 TSVLDGYNVCIFAYGQTGTGKTFTMEGTP--ENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRDLLVENS 272 (762)
Q Consensus 196 ~svldGyN~~IfAYGqTGSGKTyTM~G~~--~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~DLL~~~s 272 (762)
+.+++|||+||||||||||||||||+|.. +++|||||++++||..+.. ......|+|.|||+|||||+|+|||+.
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~-- 158 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNA-- 158 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhC--
Confidence 99999999999999999999999999987 8999999999999987764 445689999999999999999999973
Q ss_pred CCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc--CC--c
Q 004310 273 NQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI--NG--Q 348 (762)
Q Consensus 273 ~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~--~g--~ 348 (762)
.+....|.+|+.+..|. ||.+|+.+.|.|..|+.++|+.|++.|++++|+||+.|||||+||+|.+.+.... .+ .
T Consensus 159 p~~kg~LRVREHP~lGP-YVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s 237 (1221)
T KOG0245|consen 159 PKSKGGLRVREHPILGP-YVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS 237 (1221)
T ss_pred CCCCCCceeeccCccCh-hHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence 23456899999999775 6999999999999999999999999999999999999999999999999876543 22 5
Q ss_pred eEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-------CCCccCCCCchhhhcccccCCCc
Q 004310 349 KTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK-------SGHIPYRNSKLTHILQSSLGGDC 421 (762)
Q Consensus 349 ~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-------~~hIPYRdSKLT~LLqdsLgGns 421 (762)
...|+|+|||||||||++.+|+.|+|+|||.+|||||.+||.||+||++. +.+||||||.||+||+++|||||
T Consensus 238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS 317 (1221)
T KOG0245|consen 238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS 317 (1221)
T ss_pred eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc
Confidence 67899999999999999999999999999999999999999999999853 34999999999999999999999
Q ss_pred eeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCccccchhHHH-HHHHHHHHHH
Q 004310 422 KTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELF-KYKQMAEKLK 477 (762)
Q Consensus 422 kT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~~~~~~~-~~k~~~e~lk 477 (762)
||+||++|||+..||+|||+|||||+|||.|++.+..|...-..++ ++++.+.+||
T Consensus 318 KTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLk 374 (1221)
T KOG0245|consen 318 KTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLK 374 (1221)
T ss_pred hhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988865433332 2444444444
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-82 Score=699.97 Aligned_cols=330 Identities=43% Similarity=0.640 Sum_probs=305.7
Q ss_pred cCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCc
Q 004310 124 LKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGY 202 (762)
Q Consensus 124 lkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGy 202 (762)
.-++|+|+||+||++..|...++.-+..|.+. +..+.+..+... +.|.||+||.|+++|++||+. +.|+|++||.||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~-~~~v~~~~~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENG-ENTVVLETTKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCC-cceEEEeccccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhccc
Confidence 34789999999999999988887777766664 455555554444 899999999999999999998 699999999999
Q ss_pred ceeEEeeccCCCCCccccCCCCC---CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccc
Q 004310 203 NVCIFAYGQTGTGKTFTMEGTPE---NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKL 279 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l 279 (762)
|+||||||||||||||||.|... ..||+||++++||..+........|+|+|||||||+|+|+|||++. ...+
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~----k~nl 158 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE----KTNL 158 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc----cCCc
Confidence 99999999999999999999765 5699999999999999988888999999999999999999999753 4578
Q ss_pred eeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEec
Q 004310 280 EIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDL 359 (762)
Q Consensus 280 ~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDL 359 (762)
.|.+|.. ++++|+|+++..|.++++++++++.|..+|+++.|+||++|||||+||+|+|.+.+..++....|+|+||||
T Consensus 159 svheDK~-~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDL 237 (607)
T KOG0240|consen 159 SVHEDKN-RVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDL 237 (607)
T ss_pred eeecccC-CCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEc
Confidence 8999844 667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 360 AGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK-SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 360 AGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
||||+++++|++|.-+.|+++||+||+|||+||+||+++ ..|||||||||||||||+|||||+|.+|+|+||+..+..|
T Consensus 238 aGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~E 317 (607)
T KOG0240|consen 238 AGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAE 317 (607)
T ss_pred ccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccc
Confidence 999999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccCCCccc
Q 004310 439 TLCSLNFASRVRGIESGPARKQ 460 (762)
Q Consensus 439 TLsTLrFAsrak~I~~~p~~~~ 460 (762)
|.+||+|+.||+.|++.+..+.
T Consensus 318 T~STl~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 318 TKSTLRFGNRAKTIKNTVWVNL 339 (607)
T ss_pred cccchhhccccccccchhhhhh
Confidence 9999999999999999886654
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6e-82 Score=686.54 Aligned_cols=319 Identities=44% Similarity=0.668 Sum_probs=293.6
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC------------CCCceeeecCeeeCCCCChhHHHhc-cch
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS------------DSSKKQFKFDYVFKPEDNQEAVFAQ-TKP 193 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~------------~~~~k~F~FD~VF~~~~tQ~eVf~~-~~p 193 (762)
||+|||||||++..|...+...++.+.+. ..+.+... ....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD--RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC--CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 69999999999999988888888887654 22222211 2236789999999999999999998 579
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSN 273 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~ 273 (762)
+|+++++|||+||||||||||||||||+|+++++|||||++++||..++.....+.|.|+|||+|||||+|+|||++.
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-- 156 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS-- 156 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC--
Confidence 999999999999999999999999999999999999999999999999887777899999999999999999999764
Q ss_pred CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc---CCceE
Q 004310 274 QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI---NGQKT 350 (762)
Q Consensus 274 ~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~---~g~~~ 350 (762)
...+.++++..++ ++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|+|.+.+.. .+...
T Consensus 157 --~~~l~i~ed~~~~-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~ 233 (338)
T cd01370 157 --SGPLELREDPNQG-IVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVR 233 (338)
T ss_pred --CCCceEEEcCCCC-EEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEE
Confidence 4578999999844 67999999999999999999999999999999999999999999999999988765 55678
Q ss_pred EEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC---CCccCCCCchhhhcccccCCCceeeEEE
Q 004310 351 KSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS---GHIPYRNSKLTHILQSSLGGDCKTLMFV 427 (762)
Q Consensus 351 ~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLgGnskT~mI~ 427 (762)
.|+|+|||||||||.++++..|.+++|+.+||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~ 313 (338)
T cd01370 234 IGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIA 313 (338)
T ss_pred EEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEE
Confidence 8999999999999999999999999999999999999999999999887 8999999999999999999999999999
Q ss_pred ecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 428 QISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 428 ~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
||||+..+++||++||+||+||++|
T Consensus 314 ~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 314 NISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.9e-80 Score=674.60 Aligned_cols=318 Identities=43% Similarity=0.604 Sum_probs=283.6
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcce
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNV 204 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~ 204 (762)
+||||+|||||+...|...+...++..+..+ .+.+... ..+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~--~~~~~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ 76 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSD--TLVWHSH--PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNG 76 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCC--cEEeeCC--CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 4899999999999988866666666655432 2332222 26899999999999999999998 58999999999999
Q ss_pred eEEeeccCCCCCccccCCCCC--------CCCchhhhHHHHHHHhhcc----CCceeEEEEEEEEEEEccccccccccCC
Q 004310 205 CIFAYGQTGTGKTFTMEGTPE--------NRGVNYRTLEELFRVSKHR----NGIMRYELFVSMLEVYNEKIRDLLVENS 272 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G~~~--------~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYNE~I~DLL~~~s 272 (762)
||||||||||||||||+|+.. ++||+||++++||..++.. .....|.|+|||+|||||+|+|||++.
T Consensus 77 ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~- 155 (337)
T cd01373 77 SIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT- 155 (337)
T ss_pred eEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC-
Confidence 999999999999999999753 6899999999999877543 245689999999999999999999754
Q ss_pred CCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCC--ceE
Q 004310 273 NQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLING--QKT 350 (762)
Q Consensus 273 ~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g--~~~ 350 (762)
...+.+++++.+| ++|+|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|...+...+ ...
T Consensus 156 ---~~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 231 (337)
T cd01373 156 ---SRNLKIREDIKKG-VYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIR 231 (337)
T ss_pred ---CCCceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEE
Confidence 3468999998855 5799999999999999999999999999999999999999999999999987665443 356
Q ss_pred EEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc----CCCCccCCCCchhhhcccccCCCceeeEE
Q 004310 351 KSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS----KSGHIPYRNSKLTHILQSSLGGDCKTLMF 426 (762)
Q Consensus 351 ~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~----k~~hIPYRdSKLT~LLqdsLgGnskT~mI 426 (762)
.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..||||||||||+||+|+|||||+|+||
T Consensus 232 ~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I 311 (337)
T cd01373 232 TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTII 311 (337)
T ss_pred EEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999999999999999999999999999999985 46899999999999999999999999999
Q ss_pred EecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 427 VQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 427 ~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
|||||+..+++||++||+||+||+.|
T Consensus 312 ~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 312 ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999986
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.6e-80 Score=728.42 Aligned_cols=333 Identities=40% Similarity=0.609 Sum_probs=289.6
Q ss_pred HHHHHHHhhhc----CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHh
Q 004310 114 RKQLYNEVIEL----KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFA 189 (762)
Q Consensus 114 Rk~l~N~l~el----kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~ 189 (762)
+++|+.+-..- .++|+|||||||++..|. +...++.+.. +.+.+. .+.|.||+||+++++|++||+
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~--g~~iV~~~s~---dsl~I~-----~qtFtFD~VFdp~aTQedVFe 151 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEE--GEMIVQKMSN---DSLTIN-----GQTFTFDSIADPESTQEDIFQ 151 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccC--CCeeEEEcCC---CeEEEe-----CcEEeCCeeeCCCCCHHHHHH
Confidence 34555443333 579999999999998753 3334443322 233331 368999999999999999999
Q ss_pred c-cchhhhhhccCcceeEEeeccCCCCCccccCCCC----------CCCCchhhhHHHHHHHhhcc-----CCceeEEEE
Q 004310 190 Q-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP----------ENRGVNYRTLEELFRVSKHR-----NGIMRYELF 253 (762)
Q Consensus 190 ~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~----------~~~GIipRal~~LF~~~~~~-----~~~~~~~V~ 253 (762)
. +.|+|+++++|||+||||||||||||||||+|+. .++|||||++++||..+... ...+.|.|+
T Consensus 152 ~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~ 231 (1320)
T PLN03188 152 LVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCR 231 (1320)
T ss_pred HHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEE
Confidence 8 5899999999999999999999999999999963 56899999999999987542 234689999
Q ss_pred EEEEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCcee
Q 004310 254 VSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHC 333 (762)
Q Consensus 254 vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~ 333 (762)
|||+|||||+|+|||++. ...+.|+++..+| ++|.||+++.|.|++|+..+|..|..+|++++|.+|..|||||+
T Consensus 232 vSyLEIYNEkI~DLLsp~----~k~L~IRED~kgG-v~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHa 306 (1320)
T PLN03188 232 CSFLEIYNEQITDLLDPS----QKNLQIREDVKSG-VYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHS 306 (1320)
T ss_pred EEEEeeecCcceeccccc----cCCceEEEcCCCC-eEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCce
Confidence 999999999999999754 3468999998866 67999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeecc--C--CceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc-----CCCCccC
Q 004310 334 LLRVSVKGENLI--N--GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-----KSGHIPY 404 (762)
Q Consensus 334 If~I~V~~~~~~--~--g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~-----k~~hIPY 404 (762)
||+|.|...... . +....|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|+. +..||||
T Consensus 307 IFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPY 386 (1320)
T PLN03188 307 VFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPY 386 (1320)
T ss_pred eEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCC
Confidence 999999865432 2 234679999999999999999999999999999999999999999999985 4579999
Q ss_pred CCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCcccc
Q 004310 405 RNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQS 461 (762)
Q Consensus 405 RdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~ 461 (762)
||||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|++.|..+..
T Consensus 387 RDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 387 RDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred CcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 999999999999999999999999999999999999999999999999999987754
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-81 Score=723.33 Aligned_cols=333 Identities=43% Similarity=0.640 Sum_probs=296.1
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC---CCceeeecCeeeCCCCChhHHHhc-cchhhhhhcc
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD---SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLD 200 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~---~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svld 200 (762)
..+|.|+|||||+++.|...+..+.+....+........... .....|.||+||+++++|++||+. ++|+|.+|++
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 357999999999999876666655555543321111111111 114789999999999999999998 8999999999
Q ss_pred CcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccce
Q 004310 201 GYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLE 280 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~ 280 (762)
|||++|||||||||||||||.|..++|||||+++.+||..+.+.. .+.|.|.|||+|||||.|+|||+++. ..+.
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~----~~L~ 159 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG----GDLR 159 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC----CCce
Confidence 999999999999999999999999999999999999999998877 68999999999999999999997653 3499
Q ss_pred eeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEecc
Q 004310 281 IKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLA 360 (762)
Q Consensus 281 Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLA 360 (762)
|++|+.+| ++|+||++..|.|++++..+|..|..+|+++.|++|..|||||+||+|.|.......+. ..|+|+|||||
T Consensus 160 irED~~~g-i~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLA 237 (675)
T KOG0242|consen 160 LREDSEGG-IVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLA 237 (675)
T ss_pred EeEcCCCC-EEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhh
Confidence 99999976 56999999999999999999999999999999999999999999999999887755442 77899999999
Q ss_pred CcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC--CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 361 GSERVGKIEVDGERLKESQFINKSLSALGDVISALASK--SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 361 GSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k--~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
||||+.++++.|.|++||.+||+||++||+||.+|+++ ..||||||||||||||++|||||+|+|||||+|+..+++|
T Consensus 238 GSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 238 GSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99999999999999999999999999999999999976 5699999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccCCCccccchh
Q 004310 439 TLCSLNFASRVRGIESGPARKQSDIS 464 (762)
Q Consensus 439 TLsTLrFAsrak~I~~~p~~~~~~~~ 464 (762)
|.+||+||+||+.|++.+..+.....
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~~~~~ 343 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNVILSD 343 (675)
T ss_pred HHHHHHHHHHhhhcccccccceecch
Confidence 99999999999999999887755443
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.6e-79 Score=669.26 Aligned_cols=316 Identities=37% Similarity=0.600 Sum_probs=285.3
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC------------CCCceeeecCeeeCCCCChhHHHhc-cc
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS------------DSSKKQFKFDYVFKPEDNQEAVFAQ-TK 192 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~------------~~~~k~F~FD~VF~~~~tQ~eVf~~-~~ 192 (762)
.+|+|||||||+...|...+..+++.+.+. ..+.+... ....+.|.||+||+++++|++||+. +.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~ 78 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINS--TTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTAL 78 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCC--CEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHH
Confidence 379999999999999887777777776554 34444332 2246789999999999999999998 68
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCC
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s 272 (762)
|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.+.. |.|+|||+|||||+|+|||++..
T Consensus 79 p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~ 152 (345)
T cd01368 79 PLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSP 152 (345)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCcc
Confidence 999999999999999999999999999999999999999999999998765 89999999999999999998754
Q ss_pred C--CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccC----
Q 004310 273 N--QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN---- 346 (762)
Q Consensus 273 ~--~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~---- 346 (762)
. ...+.+.|+++.. |.++|+|++++.|.|++|++++|..|.++|.+++|.+|.+|||||+||+|+|.+.....
T Consensus 153 ~~~~~~~~l~i~ed~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~ 231 (345)
T cd01368 153 SSTKKRQSLRLREDHN-GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDV 231 (345)
T ss_pred ccccCCCceEEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccc
Confidence 3 2345789999988 55679999999999999999999999999999999999999999999999998765432
Q ss_pred ----CceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc------CCCCccCCCCchhhhcccc
Q 004310 347 ----GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS------KSGHIPYRNSKLTHILQSS 416 (762)
Q Consensus 347 ----g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~------k~~hIPYRdSKLT~LLqds 416 (762)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..||||||||||+||+|+
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~ 311 (345)
T cd01368 232 DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNY 311 (345)
T ss_pred ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999986 5689999999999999999
Q ss_pred cCCCceeeEEEecCCCCCChHhhHHHHHHHhHhh
Q 004310 417 LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVR 450 (762)
Q Consensus 417 LgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak 450 (762)
|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 312 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 312 FDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.9e-78 Score=663.14 Aligned_cols=328 Identities=39% Similarity=0.623 Sum_probs=298.6
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC------CCceeeecCeeeCCC-------CChhHHHhc-c
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD------SSKKQFKFDYVFKPE-------DNQEAVFAQ-T 191 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~------~~~k~F~FD~VF~~~-------~tQ~eVf~~-~ 191 (762)
+||+|||||||++..|...+...++.+++ ..+.+.... ...+.|.||+||+++ ++|++||+. +
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~---~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~ 77 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG---KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLG 77 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC---CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHH
Confidence 68999999999999998888888888876 345554442 356889999999999 999999998 6
Q ss_pred chhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCC-ceeEEEEEEEEEEEcccccccccc
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNG-IMRYELFVSMLEVYNEKIRDLLVE 270 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYNE~I~DLL~~ 270 (762)
.|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|+|||+|||||+|+|||++
T Consensus 78 ~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 78 RELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 8999999999999999999999999999999999999999999999998876544 578999999999999999999986
Q ss_pred CCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc----C
Q 004310 271 NSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI----N 346 (762)
Q Consensus 271 ~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~----~ 346 (762)
.. .....+.++++..+| ++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... .
T Consensus 158 ~~-~~~~~l~i~~~~~~g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~ 235 (356)
T cd01365 158 KK-KNKGNLKVREHPVLG-PYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDL 235 (356)
T ss_pred Cc-cCCcCceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCC
Confidence 53 234578899988755 57999999999999999999999999999999999999999999999999887654 4
Q ss_pred CceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC--------CCCccCCCCchhhhcccccC
Q 004310 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK--------SGHIPYRNSKLTHILQSSLG 418 (762)
Q Consensus 347 g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k--------~~hIPYRdSKLT~LLqdsLg 418 (762)
.....|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.. ..||||||||||+||+|+||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lg 315 (356)
T cd01365 236 TTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLG 315 (356)
T ss_pred CceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcC
Confidence 4568899999999999999999999999999999999999999999999863 47999999999999999999
Q ss_pred CCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCc
Q 004310 419 GDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPAR 458 (762)
Q Consensus 419 GnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~ 458 (762)
|||+|+||+||||...+++||++||+||+++++|++.|..
T Consensus 316 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 316 GNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 9999999999999999999999999999999999999864
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.5e-78 Score=650.40 Aligned_cols=312 Identities=40% Similarity=0.618 Sum_probs=285.1
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC--------CCceeeecCeeeCCCCChhHHHhc-cchhhh
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD--------SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVT 196 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~--------~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~ 196 (762)
++|+|+|||||+.+.|...+..+++.++++ ..+.+.... ...+.|.||+||+++++|++||+. +.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN--PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC--CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHH
Confidence 589999999999999988777888888765 234443211 125789999999999999999998 799999
Q ss_pred hhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCC
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPS 276 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~ 276 (762)
++++|||+||||||||||||||||+|+.+++||+||++++||+.++... ..|.|++||+|||||+|+|||++ .
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~-----~ 151 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND-----R 151 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC-----c
Confidence 9999999999999999999999999999999999999999999887655 57999999999999999999975 3
Q ss_pred ccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEE
Q 004310 277 KKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWL 356 (762)
Q Consensus 277 ~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~L 356 (762)
+.+.++++..++ ++|+|++++.|.|++|++++|+.|.++|.+++|.+|..|||||+||+|+|.+.+. ....|+|+|
T Consensus 152 ~~l~i~~~~~~~-~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~ 227 (322)
T cd01367 152 KRLSVLEDGKGN-VQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSF 227 (322)
T ss_pred cceeEEEcCCCC-EEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEE
Confidence 578999998854 6799999999999999999999999999999999999999999999999988764 567899999
Q ss_pred EeccCcccccccc-cchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCC
Q 004310 357 VDLAGSERVGKIE-VDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSD 435 (762)
Q Consensus 357 VDLAGSER~~kt~-~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~ 435 (762)
|||||||+...++ ..|++++|+.+||+||++|++||.+|+++..||||||||||+||+|+|||||+|+||+||||+..+
T Consensus 228 vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~ 307 (322)
T cd01367 228 IDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASS 307 (322)
T ss_pred eecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhh
Confidence 9999999998764 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHhHhh
Q 004310 436 LGETLCSLNFASRVR 450 (762)
Q Consensus 436 ~~ETLsTLrFAsrak 450 (762)
++||++||+||+|+|
T Consensus 308 ~~eTl~tL~fa~r~k 322 (322)
T cd01367 308 CEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5.4e-77 Score=650.55 Aligned_cols=331 Identities=42% Similarity=0.634 Sum_probs=298.3
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC---CCceeeecCeeeCCCCChhHHHhc-cchhhhhhccC
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD---SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDG 201 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~---~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldG 201 (762)
+||+|+|||||+...|...+...++.++.. ...+.+.... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~-~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGS-SKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCC-CcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999999988778888888765 3455554432 256889999999999999999998 79999999999
Q ss_pred cceeEEeeccCCCCCccccCCCC-----------CCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEcccccccccc
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTP-----------ENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVE 270 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~-----------~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~ 270 (762)
||+||||||||||||||||+|+. +++|||||++++||+.+... ...|.|+|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 99999999999999999999974 34899999999999988765 468999999999999999999986
Q ss_pred CCCCCCccceeeecc-CCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc---C
Q 004310 271 NSNQPSKKLEIKQAA-EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI---N 346 (762)
Q Consensus 271 ~s~~~~~~l~Ir~~~-~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~---~ 346 (762)
.. ...+.+.+++++ ..+.++|+|++++.|.|++|+.++|+.|.++|.+++|.+|..|||||+||+|.|...... .
T Consensus 159 ~~-~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~ 237 (352)
T cd01364 159 ES-DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237 (352)
T ss_pred cc-ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC
Confidence 54 235678899984 235567999999999999999999999999999999999999999999999999876543 2
Q ss_pred CceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEE
Q 004310 347 GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMF 426 (762)
Q Consensus 347 g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI 426 (762)
.....|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 23467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCChHhhHHHHHHHhHhhccccCCCccc
Q 004310 427 VQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460 (762)
Q Consensus 427 ~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~ 460 (762)
+||||...+++||++||+||+++++|++.|..++
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999998765
No 14
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.5e-76 Score=641.26 Aligned_cols=328 Identities=57% Similarity=0.866 Sum_probs=302.6
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhccchhhhhhccCcce
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNV 204 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~ 204 (762)
+|+|+|+||+||+...|. ....+++.+++.+...+.+.......+.|.||+||+++++|++||+.+.|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 699999999999998876 3445677787765456666554366789999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCC-ceeEEEEEEEEEEEccccccccccCCCCCCccceeee
Q 004310 205 CIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNG-IMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQ 283 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~ 283 (762)
||||||+|||||||||+|+.+++||+||++++||..++.... .+.|.|++||+|||||+|+|||++.. ...+.++|++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-~~~~~l~i~~ 158 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP-APKKKLEIKH 158 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-CCCCceEEEE
Confidence 999999999999999999999999999999999998876654 67899999999999999999997653 2356799999
Q ss_pred ccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcc
Q 004310 284 AAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSE 363 (762)
Q Consensus 284 ~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSE 363 (762)
++. |.++|.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||||||||
T Consensus 159 ~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 159 DSK-GETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCc
Confidence 986 5567999999999999999999999999999999999999999999999999998887888899999999999999
Q ss_pred cccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHH
Q 004310 364 RVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSL 443 (762)
Q Consensus 364 R~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTL 443 (762)
+..+.+..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||+|+|+||+||||...+++||++||
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL 317 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL 317 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhccccC
Q 004310 444 NFASRVRGIESG 455 (762)
Q Consensus 444 rFAsrak~I~~~ 455 (762)
+||+++++|++|
T Consensus 318 ~~a~~~~~i~~~ 329 (329)
T cd01366 318 RFASRVRSVELG 329 (329)
T ss_pred HHHHHhhcccCC
Confidence 999999999875
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.4e-76 Score=641.27 Aligned_cols=321 Identities=45% Similarity=0.700 Sum_probs=292.5
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC----CCceeeecCeeeCCCCChhHHHhc-cchhhhhhcc
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD----SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLD 200 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~----~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svld 200 (762)
.||+|+|||||++..|...+..+++.++.. ...+.+.... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDEN-RGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLE 79 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCC-CCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhC
Confidence 389999999999999988888888888755 3445554332 357889999999999999999998 7999999999
Q ss_pred CcceeEEeeccCCCCCccccCCCCC---CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCc
Q 004310 201 GYNVCIFAYGQTGTGKTFTMEGTPE---NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK 277 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~ 277 (762)
|||+||||||||||||||||+|+.. ++|||||++++||..+..... ..|.|+|||+|||||+|+|||.+.. .+
T Consensus 80 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~---~~ 155 (333)
T cd01371 80 GYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ---KK 155 (333)
T ss_pred CCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC---CC
Confidence 9999999999999999999999887 899999999999998876654 6899999999999999999997643 35
Q ss_pred cceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc---CCceEEEEE
Q 004310 278 KLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI---NGQKTKSHL 354 (762)
Q Consensus 278 ~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~---~g~~~~SkL 354 (762)
.+.+++++.+| ++|+|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|+..+.. .+....|+|
T Consensus 156 ~l~i~~~~~~~-~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L 234 (333)
T cd01371 156 KLELKERPDRG-VYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKL 234 (333)
T ss_pred ceeEEEcCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEE
Confidence 78899998855 56999999999999999999999999999999999999999999999999987764 344568999
Q ss_pred EEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC-CccCCCCchhhhcccccCCCceeeEEEecCCCC
Q 004310 355 WLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG-HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSS 433 (762)
Q Consensus 355 ~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~-hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~ 433 (762)
+|||||||||..+++..|.+++|+..||+||.+|++||.+|+++.. ||||||||||+||+|+|||||+|+||+||+|..
T Consensus 235 ~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~ 314 (333)
T cd01371 235 NLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 314 (333)
T ss_pred EEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcc
Confidence 9999999999999999999999999999999999999999998775 999999999999999999999999999999999
Q ss_pred CChHhhHHHHHHHhHhhcc
Q 004310 434 SDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 434 ~~~~ETLsTLrFAsrak~I 452 (762)
.+++||++||+||+|+|.|
T Consensus 315 ~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 315 YNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986
No 16
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-77 Score=669.96 Aligned_cols=403 Identities=35% Similarity=0.546 Sum_probs=328.5
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee------CCCCceeeecCeeeCCC-------CChhHHHhc-
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS------SDSSKKQFKFDYVFKPE-------DNQEAVFAQ- 190 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~------~~~~~k~F~FD~VF~~~-------~tQ~eVf~~- 190 (762)
..+|||.|||||++.+|.+-...+++.++.++ ..++... .....++|.||++|.+. +.|+.||..
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q-~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQ-TVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCc-eeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 35799999999999999998888999998764 2343332 12467899999999865 479999998
Q ss_pred cchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEccccccccc
Q 004310 191 TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRDLLV 269 (762)
Q Consensus 191 ~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~DLL~ 269 (762)
+..+|+++|+|||+||||||||||||||||+|+.+++|||||.++.||..+.. .+....|.|.|||+|||||++||||.
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence 56799999999999999999999999999999999999999999999987764 45567899999999999999999998
Q ss_pred cCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeec--cCC
Q 004310 270 ENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENL--ING 347 (762)
Q Consensus 270 ~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~--~~g 347 (762)
|+.+ ...+.++++...| ++|.||++..|.|++|+..+|..|+++|++++|+||..|||||+||.|.|.+.-. .+|
T Consensus 162 Pk~s--sqtlkVrehsvlG-p~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 162 PKGS--SQTLKVREHSVLG-PYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred CCCC--cceeEEeeccccc-ccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccC
Confidence 8654 4688999998877 5699999999999999999999999999999999999999999999999977532 222
Q ss_pred --ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC------CCCccCCCCchhhhcccccCC
Q 004310 348 --QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK------SGHIPYRNSKLTHILQSSLGG 419 (762)
Q Consensus 348 --~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k------~~hIPYRdSKLT~LLqdsLgG 419 (762)
....|+|.|||||||||+.++++.|.|++|+.+||+||++||.||+||+++ +++||||||.||+||+|+|||
T Consensus 239 ~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGG 318 (1714)
T KOG0241|consen 239 HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGG 318 (1714)
T ss_pred cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCC
Confidence 346799999999999999999999999999999999999999999999963 469999999999999999999
Q ss_pred CceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCccccchhH-HHHHHHHHHHHHHh-----HHHHHHHHHHHHHH
Q 004310 420 DCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISE-LFKYKQMAEKLKQD-----EKETKKLQDNLQSV 493 (762)
Q Consensus 420 nskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~~~~~-~~~~k~~~e~lk~~-----e~e~~~L~~~l~~l 493 (762)
||+|+||+||||+++||+|||+||+||.|||.|+|....|...... +.++...+++|... ..+..++++.+++
T Consensus 319 NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~e- 397 (1714)
T KOG0241|consen 319 NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEE- 397 (1714)
T ss_pred CceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHH-
Confidence 9999999999999999999999999999999999998877654332 22333333433321 1122233333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004310 494 QLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRAFAA 535 (762)
Q Consensus 494 q~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~~~~ 535 (762)
..+-.+++...++|++..+|. ++.+++..++....++.+
T Consensus 398 --sekli~ei~~twEEkl~ktE~-in~erq~~L~~~gis~~~ 436 (1714)
T KOG0241|consen 398 --SEKLIKEITVTWEEKLRKTEE-INQERQAQLESMGISLEN 436 (1714)
T ss_pred --HHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 222334455667777777754 344455555544444433
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.3e-76 Score=636.84 Aligned_cols=319 Identities=47% Similarity=0.736 Sum_probs=295.7
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcce
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNV 204 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~ 204 (762)
.+|+|+|||||+...|...+..+++.+++. ..+.+.. ....+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~--~~v~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~ 78 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE--DTVSIAG-SDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG 78 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC--CEEEecC-CCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence 389999999999999877778888888665 3444433 3456899999999999999999998 59999999999999
Q ss_pred eEEeeccCCCCCccccCCCCC---CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcccee
Q 004310 205 CIFAYGQTGTGKTFTMEGTPE---NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEI 281 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~I 281 (762)
||||||||||||||||+|+.. ++||+||++++||+.+.......+|.|++||+|||||.++|||++. ...+.+
T Consensus 79 ~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----~~~l~i 154 (325)
T cd01369 79 TIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----KDNLQV 154 (325)
T ss_pred eEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc----cCCceE
Confidence 999999999999999999987 8999999999999998887777889999999999999999999754 346889
Q ss_pred eeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccC
Q 004310 282 KQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361 (762)
Q Consensus 282 r~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAG 361 (762)
+++..+| ++|+|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||||
T Consensus 155 ~~~~~~~-~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAG 233 (325)
T cd01369 155 HEDKNRG-VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAG 233 (325)
T ss_pred EEcCCCC-EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCC
Confidence 9888755 579999999999999999999999999999999999999999999999999988877888999999999999
Q ss_pred cccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC-CCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhH
Q 004310 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKS-GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETL 440 (762)
Q Consensus 362 SER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETL 440 (762)
||+..+.++.|.+++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||+|+|+||+||||...+++||+
T Consensus 234 sE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl 313 (325)
T cd01369 234 SEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETL 313 (325)
T ss_pred CCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcc
Q 004310 441 CSLNFASRVRGI 452 (762)
Q Consensus 441 sTLrFAsrak~I 452 (762)
+||+||+|+++|
T Consensus 314 ~TL~~a~r~~~i 325 (325)
T cd01369 314 STLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHhhcC
Confidence 999999999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.7e-76 Score=637.38 Aligned_cols=313 Identities=39% Similarity=0.583 Sum_probs=280.8
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCC---ceEEEeeCC--CCceeeecCeeeCCCCChhHHHhc-cchhhhhhcc
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQE---NELQIVSSD--SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLD 200 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~---~~l~v~~~~--~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svld 200 (762)
||+|+|||||+...|.. ...++...+.+. ..+.+.... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~--~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEED--SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccC--CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 79999999999988843 334444432211 234444332 346789999999999999999998 7999999999
Q ss_pred CcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccce
Q 004310 201 GYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLE 280 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~ 280 (762)
|||+||||||||||||||||+|+..++||+||++++||+.++... +.|.|++||+|||||.|+|||++. ...+.
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~----~~~l~ 152 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA----KKELP 152 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC----CCCce
Confidence 999999999999999999999999999999999999999876543 679999999999999999999754 34688
Q ss_pred eeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEecc
Q 004310 281 IKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLA 360 (762)
Q Consensus 281 Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLA 360 (762)
|++++. |.++|+|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|.|.+.+. +....|+|+|||||
T Consensus 153 i~~~~~-~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLA 229 (319)
T cd01376 153 IREDKD-GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLA 229 (319)
T ss_pred EEEcCC-CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECC
Confidence 999887 446799999999999999999999999999999999999999999999999987753 34678999999999
Q ss_pred CcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhH
Q 004310 361 GSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETL 440 (762)
Q Consensus 361 GSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETL 440 (762)
|||+..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||+
T Consensus 230 GsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (319)
T cd01376 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTL 309 (319)
T ss_pred CCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhh
Q 004310 441 CSLNFASRVR 450 (762)
Q Consensus 441 sTLrFAsrak 450 (762)
+||+||+|+|
T Consensus 310 ~TL~fa~r~~ 319 (319)
T cd01376 310 STLNFASRSK 319 (319)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.6e-75 Score=631.61 Aligned_cols=315 Identities=43% Similarity=0.665 Sum_probs=287.9
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCccee
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVC 205 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~ 205 (762)
||+|+|||||+...|.. +..+++.++.+ ..+.+.. ....+.|.||+||+++++|++||+. +.|+|+.+++|||+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~--~~v~~~~-~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND--NTISLEE-STPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC--CEEEEcC-CCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 69999999999998874 45677777664 3444332 2457899999999999999999998 689999999999999
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccceeeecc
Q 004310 206 IFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAA 285 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~ 285 (762)
|||||||||||||||+|+..++||+||++++||..+.... ...|.|++||+|||||+|+|||++.. ..+.+++++
T Consensus 77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----~~l~i~~~~ 151 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----QELRIREDP 151 (321)
T ss_pred EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC----CCceEEECC
Confidence 9999999999999999999999999999999999887655 46899999999999999999997653 578899998
Q ss_pred CCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccC---CceEEEEEEEEeccCc
Q 004310 286 EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN---GQKTKSHLWLVDLAGS 362 (762)
Q Consensus 286 ~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~---g~~~~SkL~LVDLAGS 362 (762)
.+| ++|+|++++.|.|++|+..+|+.|.++|.+++|.+|.+|||||+||+|+|.+.+... +....|+|+|||||||
T Consensus 152 ~~~-~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGs 230 (321)
T cd01374 152 NKG-VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGS 230 (321)
T ss_pred CCC-EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCC
Confidence 855 579999999999999999999999999999999999999999999999999887654 5678899999999999
Q ss_pred ccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC--CCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhH
Q 004310 363 ERVGKIEVDGERLKESQFINKSLSALGDVISALASKS--GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETL 440 (762)
Q Consensus 363 ER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETL 440 (762)
||..+.+ .+.+++|+.+||+||++|++||.+|+++. .||||||||||+||+|+|||||+|+||+||||...+++||+
T Consensus 231 E~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (321)
T cd01374 231 ERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETL 309 (321)
T ss_pred CccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHH
Confidence 9999988 89999999999999999999999999985 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcc
Q 004310 441 CSLNFASRVRGI 452 (762)
Q Consensus 441 sTLrFAsrak~I 452 (762)
+||+||+|+++|
T Consensus 310 ~TL~~a~r~~~i 321 (321)
T cd01374 310 NTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-75 Score=635.81 Aligned_cols=320 Identities=40% Similarity=0.655 Sum_probs=291.1
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCccee
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVC 205 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~ 205 (762)
+|+|+||+||+...|...+...++.+++.+ ..+.+ . ..+.|.||+||+++++|++||+. +.|+|+++++|||+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~~v~~--~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~ 76 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGE-PQVTV--G--TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNAT 76 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCC-CEEEe--c--CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccc
Confidence 699999999999999877777788776653 23332 1 25789999999999999999998 689999999999999
Q ss_pred EEeeccCCCCCccccCCCC------CCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccc
Q 004310 206 IFAYGQTGTGKTFTMEGTP------ENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKL 279 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l 279 (762)
|||||||||||||||+|+. +++|||||++++||+.++......+|.|.|||+|||||+|+|||++.. .....+
T Consensus 77 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~-~~~~~l 155 (341)
T cd01372 77 VLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST-SEKSPI 155 (341)
T ss_pred eeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc-cCCCCc
Confidence 9999999999999999974 579999999999999998877778999999999999999999997653 124578
Q ss_pred eeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc----------CCce
Q 004310 280 EIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI----------NGQK 349 (762)
Q Consensus 280 ~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~----------~g~~ 349 (762)
.++++..++ ++|.|++++.|.|++|++.+|..|.++|..++|.+|..|||||+||+|+|.+.+.. ....
T Consensus 156 ~i~e~~~~~-~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd01372 156 QIREDSKGN-IIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNST 234 (341)
T ss_pred eEEECCCCC-EecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCce
Confidence 999988744 67999999999999999999999999999999999999999999999999987763 3456
Q ss_pred EEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC---CCccCCCCchhhhcccccCCCceeeEE
Q 004310 350 TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS---GHIPYRNSKLTHILQSSLGGDCKTLMF 426 (762)
Q Consensus 350 ~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLgGnskT~mI 426 (762)
..|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||||+|+||
T Consensus 235 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I 314 (341)
T cd01372 235 LTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314 (341)
T ss_pred eeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 78999999999999999999999999999999999999999999999876 799999999999999999999999999
Q ss_pred EecCCCCCChHhhHHHHHHHhHhhccc
Q 004310 427 VQISPSSSDLGETLCSLNFASRVRGIE 453 (762)
Q Consensus 427 ~~ISP~~~~~~ETLsTLrFAsrak~I~ 453 (762)
+||||...+++||++||+||+++++|+
T Consensus 315 ~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 315 ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999985
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.1e-74 Score=625.09 Aligned_cols=315 Identities=44% Similarity=0.675 Sum_probs=276.3
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEE----------eeCCCCceeeecCeeeCCCCChhHHHhc-cchhh
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQI----------VSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVV 195 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v----------~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV 195 (762)
.|+|+||+||+...+.. .+ .++.+. ..+.+ .......+.|.||+||++ ++|++||+. +.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~-~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SI-KLGPDG-KSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCCc----cE-EEcCCC-CEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHH
Confidence 48999999999874432 12 222221 11111 122334678999999999 999999998 68999
Q ss_pred hhhccCcceeEEeeccCCCCCccccCCCC---CCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCC
Q 004310 196 TSVLDGYNVCIFAYGQTGTGKTFTMEGTP---ENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENS 272 (762)
Q Consensus 196 ~svldGyN~~IfAYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s 272 (762)
+++++|||+||||||||||||||||+|+. .++||+||++++||+.++...+ ..|.|++||+|||||+|+|||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRAT-KTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccC-cceEEEEEEEEEECCEeecCCCCCc
Confidence 99999999999999999999999999976 4789999999999999876554 6799999999999999999998763
Q ss_pred C--CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeee--ccCCc
Q 004310 273 N--QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGEN--LINGQ 348 (762)
Q Consensus 273 ~--~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~--~~~g~ 348 (762)
. ...+.+.|++++.+ .++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+ ...+.
T Consensus 153 ~~~~~~~~l~i~e~~~~-~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~ 231 (334)
T cd01375 153 EALESLPAVTILEDSEQ-NIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEV 231 (334)
T ss_pred cccccCCceEEEEcCCC-CEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCc
Confidence 2 13457889998874 4679999999999999999999999999999999999999999999999999873 34455
Q ss_pred eEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC-CCccCCCCchhhhcccccCCCceeeEEE
Q 004310 349 KTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS-GHIPYRNSKLTHILQSSLGGDCKTLMFV 427 (762)
Q Consensus 349 ~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLgGnskT~mI~ 427 (762)
...|+|+|||||||||..++++.|..++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||||+|+||+
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred eEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 678999999999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred ecCCCCCChHhhHHHHHHHhHhh
Q 004310 428 QISPSSSDLGETLCSLNFASRVR 450 (762)
Q Consensus 428 ~ISP~~~~~~ETLsTLrFAsrak 450 (762)
||||+..+++||++||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999984
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.1e-72 Score=607.43 Aligned_cols=327 Identities=52% Similarity=0.757 Sum_probs=302.2
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC--CCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcc
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS--DSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYN 203 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~--~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN 203 (762)
+|+|+|||||+...|...+..+++.+++.+...+.+... ....+.|.||+||+++++|++||+. +.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 699999999999999888888899998776555665442 3456889999999999999999998 5899999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccceeee
Q 004310 204 VCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQ 283 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~ 283 (762)
+||||||+|||||||||+|+.+++||+|+++++||..+........|.|+|||+|||||.|+|||++. .+.+.+++
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~----~~~l~i~~ 156 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS----PKKLEIRE 156 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC----CCCcEEEE
Confidence 99999999999999999999999999999999999988877666789999999999999999999764 35789999
Q ss_pred ccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEee--eccCCceEEEEEEEEeccC
Q 004310 284 AAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGE--NLINGQKTKSHLWLVDLAG 361 (762)
Q Consensus 284 ~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~--~~~~g~~~~SkL~LVDLAG 361 (762)
++. +.++++|++++.|.|++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||||||
T Consensus 157 ~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaG 235 (335)
T smart00129 157 DKK-GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAG 235 (335)
T ss_pred CCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCC
Confidence 887 4567999999999999999999999999999999999999999999999999966 5566678899999999999
Q ss_pred cccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc--CCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhh
Q 004310 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALAS--KSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGET 439 (762)
Q Consensus 362 SER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~--k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ET 439 (762)
+|+..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+|+|+||+||||...+++||
T Consensus 236 se~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eT 315 (335)
T smart00129 236 SERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEET 315 (335)
T ss_pred CCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHH
Confidence 999999999999999999999999999999999998 677999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhccccCCCc
Q 004310 440 LCSLNFASRVRGIESGPAR 458 (762)
Q Consensus 440 LsTLrFAsrak~I~~~p~~ 458 (762)
++||+||+++++|+++|.+
T Consensus 316 l~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 316 LSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHHhhcccCCCc
Confidence 9999999999999999964
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.4e-72 Score=605.87 Aligned_cols=320 Identities=47% Similarity=0.717 Sum_probs=285.3
Q ss_pred EeCCCCcccccCCCceEEEecCCCCceEEE---eeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcceeEEe
Q 004310 133 RCRPLNKAENANGSTSVVEFDSSQENELQI---VSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFA 208 (762)
Q Consensus 133 RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v---~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfA 208 (762)
||||++..|...+....+.+.......... .......+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 999999999988877766654321111111 1123456899999999999999999998 699999999999999999
Q ss_pred eccCCCCCccccCCC--CCCCCchhhhHHHHHHHhhccCCc--eeEEEEEEEEEEEccccccccccCCCCCCccceeeec
Q 004310 209 YGQTGTGKTFTMEGT--PENRGVNYRTLEELFRVSKHRNGI--MRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQA 284 (762)
Q Consensus 209 YGqTGSGKTyTM~G~--~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~ 284 (762)
||+|||||||||+|+ ..++||+||++++||..+...... +.|.|+|||+|||||.|+|||++........+.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 899999999999999999876654 7899999999999999999998764334457999999
Q ss_pred cCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCc----eEEEEEEEEecc
Q 004310 285 AEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQ----KTKSHLWLVDLA 360 (762)
Q Consensus 285 ~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~----~~~SkL~LVDLA 360 (762)
+..|.++|.|++++.|.+.+|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.+...+. ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 9877688999999999999999999999999999999999999999999999999998876654 478999999999
Q ss_pred Cccccccccc-chhhhHHHHHHhhhHHHHHHHHHHHhcC--CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChH
Q 004310 361 GSERVGKIEV-DGERLKESQFINKSLSALGDVISALASK--SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLG 437 (762)
Q Consensus 361 GSER~~kt~~-~g~rlkEa~~INkSLsaLg~VI~ALa~k--~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ 437 (762)
|+|+..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 4889999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhcc
Q 004310 438 ETLCSLNFASRVRGI 452 (762)
Q Consensus 438 ETLsTLrFAsrak~I 452 (762)
||++||+||+++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999986
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.2e-70 Score=593.86 Aligned_cols=318 Identities=49% Similarity=0.751 Sum_probs=288.9
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC----CCceeeecCeeeCCCCChhHHHhc-cchhhhhhccC
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD----SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDG 201 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~----~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldG 201 (762)
+|+||||+||+...| ..+...++.+++. ..+.+.... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN--KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC--CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999998876 3345677777764 345554432 346899999999999999999998 57999999999
Q ss_pred cceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCC-ceeEEEEEEEEEEEccccccccccCCCCCCccce
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNG-IMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLE 280 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~ 280 (762)
+|+||||||+|||||||||+|+.+++||+|+++++||..+..... ...|.|++||+|||+|+|+|||++.. ....+.
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~--~~~~l~ 155 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP--PSKPLS 155 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC--CCCCcE
Confidence 999999999999999999999999999999999999998876653 46899999999999999999997642 346789
Q ss_pred eeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCc--eEEEEEEEEe
Q 004310 281 IKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQ--KTKSHLWLVD 358 (762)
Q Consensus 281 Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~--~~~SkL~LVD 358 (762)
+++++.++ .+|.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|...+..... ...|+|+|||
T Consensus 156 i~~~~~~~-~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VD 234 (328)
T cd00106 156 LREDPKGG-VYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVD 234 (328)
T ss_pred EEEcCCCC-EEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEE
Confidence 99988745 57999999999999999999999999999999999999999999999999998876654 7899999999
Q ss_pred ccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC--CCccCCCCchhhhcccccCCCceeeEEEecCCCCCCh
Q 004310 359 LAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS--GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDL 436 (762)
Q Consensus 359 LAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~ 436 (762)
|||+|+..+.+..+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||+|+|+||+||||...++
T Consensus 235 LaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~ 314 (328)
T cd00106 235 LAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENY 314 (328)
T ss_pred CCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhHhh
Q 004310 437 GETLCSLNFASRVR 450 (762)
Q Consensus 437 ~ETLsTLrFAsrak 450 (762)
+||++||+||+|++
T Consensus 315 ~eTl~tL~~a~r~~ 328 (328)
T cd00106 315 DETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-67 Score=591.48 Aligned_cols=330 Identities=38% Similarity=0.570 Sum_probs=282.2
Q ss_pred hcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEE---------eeCCCCceeeecCeeeCCCCChhHHHhc-cc
Q 004310 123 ELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQI---------VSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TK 192 (762)
Q Consensus 123 elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v---------~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~ 192 (762)
+++..|.|+||+||+.... ++..++.+-+..+..+.. .+.+...+.|.|.+||+|+++|.+||+. +.
T Consensus 28 ~~~d~v~v~~rvrP~~~~~---~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDAS---EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhhcchheeEeecCCCCCc---cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 4567799999999998622 233344443332222221 0122346789999999999999999998 68
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhcc----------------------------
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR---------------------------- 244 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~---------------------------- 244 (762)
|+|.+++.|.|..+|+||-|||||||||+|++.++||+||+++-||..++..
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999544210
Q ss_pred ------------------------------------CCceeEEEEEEEEEEEccccccccccCCCCCC-cc-ceeeeccC
Q 004310 245 ------------------------------------NGIMRYELFVSMLEVYNEKIRDLLVENSNQPS-KK-LEIKQAAE 286 (762)
Q Consensus 245 ------------------------------------~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~-~~-l~Ir~~~~ 286 (762)
..+..|.|+|||+|||||-|||||.+.+.... .+ ..+++|..
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 12356999999999999999999987654332 22 44566655
Q ss_pred CCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc--CCceEEEEEEEEeccCccc
Q 004310 287 GGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI--NGQKTKSHLWLVDLAGSER 364 (762)
Q Consensus 287 ~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~--~g~~~~SkL~LVDLAGSER 364 (762)
|..+|.|+++|.|.+.+|++++|..|.++|.+++|..|..|||||+||+|.|.+.... .+..+.|.|.|||||||||
T Consensus 265 -~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 265 -GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred -CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchh
Confidence 6678999999999999999999999999999999999999999999999999876655 5678899999999999999
Q ss_pred ccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-----CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhh
Q 004310 365 VGKIEVDGERLKESQFINKSLSALGDVISALASK-----SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGET 439 (762)
Q Consensus 365 ~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-----~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ET 439 (762)
..++++.|.||+||.+||.||.+||+||.+|..+ +.+|||||||||++++.+|.|..+.+||+||+|...+|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 9999999999999999999999999999999853 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhccccCC
Q 004310 440 LCSLNFASRVRGIESGP 456 (762)
Q Consensus 440 LsTLrFAsrak~I~~~p 456 (762)
++.|+||.-+..|....
T Consensus 424 l~vlkFaeiaq~v~v~~ 440 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVAR 440 (809)
T ss_pred HHHHHHHHhcccccccC
Confidence 99999999999886544
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-66 Score=569.07 Aligned_cols=317 Identities=36% Similarity=0.565 Sum_probs=281.1
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC--------CCceeeecCeeeCCCCChhHHHhc-cchhhhh
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD--------SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTS 197 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~--------~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~s 197 (762)
.|.|+||-||++..|.......+|.+++.+ .+.+..+. -..+.|.||++|+..++++.||.. ++|||..
T Consensus 209 rI~VCVRKRPLnkkE~~~keiDvisvps~~--~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 209 RICVCVRKRPLNKKELTKKEIDVISVPSKN--VLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred eEEEEeecCCCCchhccccccceEeccccc--eEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 399999999999999988888898887652 33322211 125689999999999999999997 7999999
Q ss_pred hccCcceeEEeeccCCCCCccccCCCC------CCCCchhhhHHHHHHHhhcc-CCceeEEEEEEEEEEEcccccccccc
Q 004310 198 VLDGYNVCIFAYGQTGTGKTFTMEGTP------ENRGVNYRTLEELFRVSKHR-NGIMRYELFVSMLEVYNEKIRDLLVE 270 (762)
Q Consensus 198 vldGyN~~IfAYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYNE~I~DLL~~ 270 (762)
+|+|--+|+||||||||||||||.|+- ...||.-.+.+++|..+... -....+.|+|||||||+.++||||..
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 999999999999999999999998853 23699999999999988752 23357899999999999999999954
Q ss_pred CCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceE
Q 004310 271 NSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT 350 (762)
Q Consensus 271 ~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~ 350 (762)
.++|.+.+|.. +.+.|.||++..|.+.+|++++|+.|+..|+.+.|..|..|||||+||+|.+.... +.+.
T Consensus 367 -----k~KLrvLEDg~-QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~ 437 (676)
T KOG0246|consen 367 -----KKKLRVLEDGN-QQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKL 437 (676)
T ss_pred -----ccceEEeecCC-ceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---ccee
Confidence 46889999887 66789999999999999999999999999999999999999999999999886432 3578
Q ss_pred EEEEEEEeccCcccccc-cccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCC-CceeeEEEe
Q 004310 351 KSHLWLVDLAGSERVGK-IEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGG-DCKTLMFVQ 428 (762)
Q Consensus 351 ~SkL~LVDLAGSER~~k-t~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgG-nskT~mI~~ 428 (762)
.|++.||||||+||... +.++.+...||+.|||||+||..||.||...+.|+|||.||||.+|+|||-| |++|+||+|
T Consensus 438 hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ 517 (676)
T KOG0246|consen 438 HGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIAT 517 (676)
T ss_pred EeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEE
Confidence 89999999999999755 5667788889999999999999999999999999999999999999999988 999999999
Q ss_pred cCCCCCChHhhHHHHHHHhHhhcccc
Q 004310 429 ISPSSSDLGETLCSLNFASRVRGIES 454 (762)
Q Consensus 429 ISP~~~~~~ETLsTLrFAsrak~I~~ 454 (762)
|||.....+.||+|||||+|||....
T Consensus 518 ISPg~~ScEhTLNTLRYAdRVKeLsv 543 (676)
T KOG0246|consen 518 ISPGISSCEHTLNTLRYADRVKELSV 543 (676)
T ss_pred eCCCcchhhhhHHHHHHHHHHHhhcC
Confidence 99999999999999999999997643
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-65 Score=588.32 Aligned_cols=334 Identities=37% Similarity=0.584 Sum_probs=288.1
Q ss_pred eCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcceeEEeeccC
Q 004310 134 CRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQT 212 (762)
Q Consensus 134 vRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqT 212 (762)
|||+...|...|+..|+.+-+.. ..+.+ +...+|+||+||...+.|.++|+. +.|+++.+++|||++++|||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~-pqv~i----g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQt 75 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRT-PQVAI----GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQT 75 (913)
T ss_pred CCCccchHHHhcchhhcccCCCC-Cceee----cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeeccc
Confidence 69999999999998888754442 22322 346789999999999999999998 7999999999999999999999
Q ss_pred CCCCccccCCC----CCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccceeeeccCCC
Q 004310 213 GTGKTFTMEGT----PENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGG 288 (762)
Q Consensus 213 GSGKTyTM~G~----~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g 288 (762)
||||||||.+. .++.|||||+++.+|..+..... ..|.|.|||+|||+|.|+|||.+... ...+.+++ ..|
T Consensus 76 gsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~--~~~i~~~e--~~g 150 (913)
T KOG0244|consen 76 GSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRL--KANIKLRE--PKG 150 (913)
T ss_pred CCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhh--hhceeccc--cCC
Confidence 99999999776 33469999999999998876555 67999999999999999999974321 22244444 346
Q ss_pred eEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc-CCceEEEEEEEEeccCcccccc
Q 004310 289 TQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI-NGQKTKSHLWLVDLAGSERVGK 367 (762)
Q Consensus 289 ~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~-~g~~~~SkL~LVDLAGSER~~k 367 (762)
.+.+.|++++.|.+..++...|..|...|++++|+||..|||||+||+|.+++.... ......++|+|||||||||.++
T Consensus 151 ~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kk 230 (913)
T KOG0244|consen 151 EITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKK 230 (913)
T ss_pred ceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccc
Confidence 677999999999999999999999999999999999999999999999999874433 3344679999999999999999
Q ss_pred cccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC--CccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHH
Q 004310 368 IEVDGERLKESQFINKSLSALGDVISALASKSG--HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNF 445 (762)
Q Consensus 368 t~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~--hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrF 445 (762)
++++|+|++|+.+||.+|++||+||+||..... ||||||||||+||||+||||+.|+||+||||+..|++||++||+|
T Consensus 231 T~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~y 310 (913)
T KOG0244|consen 231 TKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRY 310 (913)
T ss_pred cccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHH
Confidence 999999999999999999999999999997655 999999999999999999999999999999999999999999999
Q ss_pred HhHhhccccCCCccccch-hHHHHHHHHHHHHH
Q 004310 446 ASRVRGIESGPARKQSDI-SELFKYKQMAEKLK 477 (762)
Q Consensus 446 Asrak~I~~~p~~~~~~~-~~~~~~k~~~e~lk 477 (762)
|.|++.|++.|+.++... ..+..++..++.+.
T Consensus 311 a~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~ 343 (913)
T KOG0244|consen 311 ADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQ 343 (913)
T ss_pred hhHHHHhcccccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999887332 23444444444443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-62 Score=559.95 Aligned_cols=287 Identities=46% Similarity=0.706 Sum_probs=269.7
Q ss_pred ceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCc
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGI 247 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~ 247 (762)
...|.||+||++.++|++||+. +.|+++++++|||+||||||||||||||||.|..+++||||+++.+||+.+......
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 5679999999999999999998 789999999999999999999999999999999999999999999999998877766
Q ss_pred eeEEEEEEEEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCC
Q 004310 248 MRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANEL 327 (762)
Q Consensus 248 ~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~ 327 (762)
..|.|.|||+|||||+++|||.+.... +.++.+.. +.+.|.|+++..+.+.+|++.+|++|..+|.++.|.+|..
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~~----~~~~~~~~-~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ 209 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEES----LNIREDSL-LGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDE 209 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCcccc----ccccccCC-CceEeecceEEecCChHHHHHHHHHhhhhcccccchhccc
Confidence 789999999999999999999765322 55666666 4467999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc--CCCCccCC
Q 004310 328 SSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS--KSGHIPYR 405 (762)
Q Consensus 328 SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~--k~~hIPYR 405 (762)
|||||+||++.+.+.+...+....++|+||||||||++..++..+.|++|+..||+||.+||+||.+|.. +..|||||
T Consensus 210 ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyR 289 (568)
T COG5059 210 SSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYR 289 (568)
T ss_pred cccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchh
Confidence 9999999999999998877777778999999999999999999999999999999999999999999997 78899999
Q ss_pred CCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCccc
Q 004310 406 NSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460 (762)
Q Consensus 406 dSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~ 460 (762)
+||||||||++|||+|+|.|||||+|...+++||.+||+||+++++|++.+..+.
T Consensus 290 eskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 290 ESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999988774
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.3e-51 Score=413.11 Aligned_cols=176 Identities=53% Similarity=0.826 Sum_probs=169.3
Q ss_pred HHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEcccccc
Q 004310 187 VFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRD 266 (762)
Q Consensus 187 Vf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~D 266 (762)
||+.+.|+|+.+++|||+||||||||||||||||+|+.+++||+|+++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99986699999999999999999999999999999999999999999988
Q ss_pred ccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccC
Q 004310 267 LLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN 346 (762)
Q Consensus 267 LL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~ 346 (762)
+++++..|.++|.++.|.+|+.|||||+||+|+|.+.+...
T Consensus 58 ---------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 58 ---------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ---------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC
Confidence 78999999999999999999999999999999999877655
Q ss_pred ---CceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCcee
Q 004310 347 ---GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKT 423 (762)
Q Consensus 347 ---g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT 423 (762)
+....|+|+||||||||+.++.+..+++++|++.||+||++|++||.+|++++.||||||||||+||||+|||||+|
T Consensus 99 ~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t 178 (186)
T cd01363 99 SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRT 178 (186)
T ss_pred CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeE
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCC
Q 004310 424 LMFVQISP 431 (762)
Q Consensus 424 ~mI~~ISP 431 (762)
+||+||||
T Consensus 179 ~~i~~vsP 186 (186)
T cd01363 179 LMVACISP 186 (186)
T ss_pred EEEEEeCc
Confidence 99999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.02 E-value=3.7e-12 Score=148.22 Aligned_cols=273 Identities=28% Similarity=0.307 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCC---CCceEEEe---eCCCCceeeecCeeeCC
Q 004310 107 YVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSS---QENELQIV---SSDSSKKQFKFDYVFKP 180 (762)
Q Consensus 107 ~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~---~~~~l~v~---~~~~~~k~F~FD~VF~~ 180 (762)
...+..+++.||+.+.... +++|+|+|+|......+ ......|... -.+.+... ........|.||.+|.+
T Consensus 287 pyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~e--t~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~ 363 (568)
T COG5059 287 PYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEE--TINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDR 363 (568)
T ss_pred chhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHH--HHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhh
Confidence 3457889999999999999 99999999998754211 0011111100 00111111 11223457999999999
Q ss_pred CCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhcc-CCceeEEEEEEEEEE
Q 004310 181 EDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR-NGIMRYELFVSMLEV 259 (762)
Q Consensus 181 ~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEI 259 (762)
...+..++.....+++..++| +++||++++|+++||.- ...++..-.+...|...... ...|.|...+-++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 437 (568)
T COG5059 364 SEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRI 437 (568)
T ss_pred hhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999953 34566666667777655432 334555555666666
Q ss_pred EccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEE
Q 004310 260 YNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSV 339 (762)
Q Consensus 260 YNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V 339 (762)
|-..+.++........ ...+......+.. ...+.........+..... .+...+..+.++.|.+++++|++|....
T Consensus 438 ~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 513 (568)
T COG5059 438 EIDRLLLLREEELSKK--KTKIHKLNKLRHD-LSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHL 513 (568)
T ss_pred HHHHHHHHHHHhcCCh--HHHHHHHHHHHHH-HHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcc
Confidence 6333333332221111 0000000000000 0000011111111222222 5677888999999999999999999887
Q ss_pred EeeeccCCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHh
Q 004310 340 KGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA 396 (762)
Q Consensus 340 ~~~~~~~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa 396 (762)
.+.+...+... +++|||||+||. -+.+-|.++++...+|++|..+|++|.++.
T Consensus 514 ~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 514 NGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 66654443333 899999999999 889999999999999999999999998864
No 31
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.25 E-value=0.041 Score=66.07 Aligned_cols=87 Identities=38% Similarity=0.669 Sum_probs=68.0
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCce
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIM 248 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~ 248 (762)
...+.|+.+......+..-+....+.+..++++++.. +|++|++.+.....|+.-+....++.........
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS- 95 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc-
Confidence 4678888888887777777777778888888888876 8999999999888888888888777654433321
Q ss_pred eEEEEEEEEEEEcccccccccc
Q 004310 249 RYELFVSMLEVYNEKIRDLLVE 270 (762)
Q Consensus 249 ~~~V~vS~lEIYNE~I~DLL~~ 270 (762)
..++.|++.+.|++..
T Consensus 96 ------~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 96 ------NVVEAYNERLRDLLSE 111 (670)
T ss_pred ------hhHHHHHHHHhhhccc
Confidence 1678899999999964
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.83 E-value=0.026 Score=58.62 Aligned_cols=50 Identities=28% Similarity=0.573 Sum_probs=32.9
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
..|+||.-+.. ..++..|..+..+.+.--..||. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 46999987654 34666776666665552233454 7889999999999873
No 33
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.44 E-value=0.063 Score=62.07 Aligned_cols=92 Identities=27% Similarity=0.351 Sum_probs=58.0
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCC---CCCCCch----hhhHHHHHHHhh
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---PENRGVN----YRTLEELFRVSK 242 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~---~~~~GIi----pRal~~LF~~~~ 242 (762)
..|....-|.|.-+|-.-- ..||+.+-+|...- .-.|.|||||||||-.- -.-|-++ --...+||...+
T Consensus 3 ~~F~l~s~f~PaGDQP~AI---~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEAI---AELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHHHH---HHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 3567777788887775433 34566655555443 34699999999999541 1112222 123456777777
Q ss_pred ccCCceeEEEEEEEEEEEccccc
Q 004310 243 HRNGIMRYELFVSMLEVYNEKIR 265 (762)
Q Consensus 243 ~~~~~~~~~V~vS~lEIYNE~I~ 265 (762)
.--....+..+|||+.-|.-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 66555667788999988865433
No 34
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.63 E-value=0.19 Score=57.11 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=31.7
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-..... +.-.|..+..+-+..-.-|| -||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~~-N~~A~aa~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGPS-NRLAYAAAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCCc-hHHHHHHHHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 45799998555444 44444433322222212355 48999999999999994
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.90 E-value=1.4 Score=49.11 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999877
No 36
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.40 E-value=0.12 Score=61.55 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=36.4
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
..|+||..+-... +...|..+..++...-.+||. ||-||.+|+||||-+.+
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4689987654333 445666566666654457786 89999999999999854
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=90.25 E-value=0.14 Score=53.36 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=32.0
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
..++||..+.... ...+. .+...+-+++|.+++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~~~~----~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LLLLD----SLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HHHHH----HHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4689999886553 22222 12223335788889999999999999884
No 38
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.01 E-value=0.13 Score=56.04 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=26.6
Q ss_pred chhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
-+++..+++--++.|+..|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 357777889999999999999999999983
No 39
>PRK12377 putative replication protein; Provisional
Probab=89.83 E-value=0.15 Score=54.24 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=36.6
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
.+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3566544445667778877777777776654 4688899999999999854
No 40
>PRK06620 hypothetical protein; Validated
Probab=89.66 E-value=0.14 Score=53.07 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=34.2
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcc---eeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYN---VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN---~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||..+...++ ...|..+..+... -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 346899987765544 4467665544431 1444 358999999999999985
No 41
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.56 E-value=0.087 Score=58.31 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=27.5
Q ss_pred hHHHhccchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 185 EAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 185 ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
..+++.+...++.+-.+. -.++-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555666777766544 5699999999999998854
No 42
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.16 E-value=0.2 Score=53.20 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=34.6
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
.+||.-......|..++..+..+++....|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4555543334557777777776766655543 3689999999999998853
No 43
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.09 E-value=0.39 Score=54.27 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=15.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346889999999999765
No 44
>PRK08116 hypothetical protein; Validated
Probab=88.98 E-value=0.14 Score=54.96 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=36.2
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhcc--CcceeEEeeccCCCCCccccC
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLD--GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svld--GyN~~IfAYGqTGSGKTyTM~ 221 (762)
.++||.-. .+..+...|..+..+++.+.+ +.|..++-||.+|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 45676543 355666677777777776643 345679999999999999884
No 45
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.96 E-value=0.15 Score=58.89 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=26.6
Q ss_pred chhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...+..++..-++-|+..|+||||||.||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 456778888999999999999999999995
No 46
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.62 E-value=0.2 Score=57.47 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=35.1
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-+.. ..+...|..+..+... -..||. +|-||++|+||||.|.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 456999986643 4455666665555543 123675 9999999999999985
No 47
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.60 E-value=0.22 Score=56.20 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=33.7
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-.. ...+...|..+..+...--..|| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 45789998443 34455567666555554222344 47889999999999883
No 48
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.36 E-value=0.24 Score=51.98 Aligned_cols=48 Identities=10% Similarity=0.328 Sum_probs=31.7
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-+.. .+...+..+..+.. ......++-||++|+||||.+.
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 345788866654 45556655444432 1222478999999999999984
No 49
>PRK05642 DNA replication initiation factor; Validated
Probab=88.00 E-value=0.27 Score=51.56 Aligned_cols=50 Identities=12% Similarity=0.285 Sum_probs=29.9
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
..|+||.-+... +...+..+..+.+..-+.-.-.++-||.+|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 468899877432 33344333333222111113468999999999999874
No 50
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.78 E-value=0.27 Score=56.42 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=34.2
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-... ..+...|..+..+.+.--..|| .+|-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 457889874432 3455566666555554323455 47889999999999984
No 51
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.70 E-value=0.26 Score=56.76 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=33.2
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.|+||.-+... +++..|..+..++..-=..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 58999866544 445566655555443212345 48999999999999984
No 52
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.50 E-value=1.6 Score=47.97 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=32.9
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccC-cceeEEeeccCCCCCccccCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDG-YNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldG-yN~~IfAYGqTGSGKTyTM~G 222 (762)
.+||.+-..+..+..++..+...+.....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455544333335666666555566655433 234699999999999999854
No 53
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.88 E-value=1.9 Score=49.09 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=29.3
Q ss_pred eeecCeeeCCCCChhHHHhcc-chhhh-hhcc--C--cceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQT-KPVVT-SVLD--G--YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~-~plV~-svld--G--yN~~IfAYGqTGSGKTyTM 220 (762)
.+.|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456666666554444444332 23332 2232 2 2346888999999999876
No 54
>PRK09087 hypothetical protein; Validated
Probab=86.61 E-value=0.38 Score=50.36 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=31.9
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-+...++. .+|..+ ....+-.|-.++-||++||||||-+.
T Consensus 15 ~~~~~~~~Fi~~~~N~-~a~~~l----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESNR-AAVSLV----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCchH-HHHHHH----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 3468899887655443 366533 22222235568999999999999984
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.90 E-value=0.43 Score=48.77 Aligned_cols=46 Identities=15% Similarity=0.420 Sum_probs=31.9
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..|+||....+ .+...++..+.++. .+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 45778776632 44555655444432 456778999999999999987
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=0.83 Score=51.43 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=31.5
Q ss_pred hhhhhhccCccee-EEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEE
Q 004310 193 PVVTSVLDGYNVC-IFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEV 259 (762)
Q Consensus 193 plV~svldGyN~~-IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEI 259 (762)
.++..++.|.-.. ++.||.||+|||.|+ +.+++.++....... .++|-+.+.
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 3445555544444 999999999999887 455555554433221 455555544
No 57
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.07 E-value=0.51 Score=48.69 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=31.4
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||..+... . +..+..+..++.. .+.+..++-||.+|+||||.+.
T Consensus 12 ~~~~~~d~f~~~~-~-~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAGE-N-AELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccCC-c-HHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 3458899887322 2 3344444444332 2345678999999999999873
No 58
>PRK06526 transposase; Provisional
Probab=84.99 E-value=0.52 Score=50.32 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=26.7
Q ss_pred eecCeeeCCCCChhHHHhc-cchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
|.|+ +.+.-++..+..- +...+. .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 4444 3344444444432 233343 4555 78999999999999864
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.86 E-value=0.66 Score=51.11 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=24.4
Q ss_pred hhHHHhccchhhhhhcc-CcceeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVLD-GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svld-GyN~~IfAYGqTGSGKTyTM 220 (762)
.++-++.....+..++. +...+++-||++|+|||+++
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333333344444444 45568999999999999876
No 60
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.41 E-value=0.68 Score=49.40 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=33.9
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
|.|..+-.....+..++..+..++..+-.|.| ++-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 43333333445678888887777766665554 57799999999998854
No 61
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.88 E-value=0.65 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.5
Q ss_pred cceeEEeeccCCCCCccccCC
Q 004310 202 YNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G 222 (762)
.+.-++..|+||||||++|.+
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 355566778999999999963
No 62
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.62 E-value=0.6 Score=42.07 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.9
Q ss_pred EEeeccCCCCCccccCC
Q 004310 206 IFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~G 222 (762)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999864
No 63
>PRK08181 transposase; Validated
Probab=80.91 E-value=0.74 Score=49.66 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.7
Q ss_pred cCcceeEEeeccCCCCCccccCC
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G 222 (762)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999999865
No 64
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.12 E-value=1 Score=50.25 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 187 VFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 187 Vf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-++.....+..++ .+...+++-||++|+|||+++
T Consensus 38 e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 38 QIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3333334444444 345567899999999999887
No 65
>PRK08727 hypothetical protein; Validated
Probab=79.85 E-value=0.71 Score=48.34 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=27.0
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcc-eeEEeeccCCCCCccccC
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYN-VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN-~~IfAYGqTGSGKTyTM~ 221 (762)
..|+||.-+...+ + ....+..+ ..|+. -.|+-||++|+||||-+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHH
Confidence 3578888664333 2 22222222 12332 359999999999999884
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.03 E-value=0.65 Score=42.95 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=13.1
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
+.+++.||.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999877
No 67
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=78.97 E-value=0.57 Score=49.94 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=71.8
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcce-eEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCcee
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNV-CIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMR 249 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~-~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~ 249 (762)
...+|...+-+...+.+.+.+. .+++|..+ .++-||..|+|||.++ ..|+.......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~----~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G---- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTE----QFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG---- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH----HHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC----
Confidence 4667777777766666666554 44555543 3566999999999776 23333222211
Q ss_pred EEEEEEEEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEE-ecChHHHHHHHHHHhhcccccccCCCCCC
Q 004310 250 YELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQ-VYGTEEVWELLKSGARVRSVGSTNANELS 328 (762)
Q Consensus 250 ~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~-V~S~ee~~~lL~~G~~~R~~~sT~~N~~S 328 (762)
+-.+||..+.+.||-.--. .++..+..-.+++.+|+--. =.+...+..+|+-|...| ....-+...|
T Consensus 81 ----LRlIev~k~~L~~l~~l~~-------~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATS 148 (249)
T PF05673_consen 81 ----LRLIEVSKEDLGDLPELLD-------LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATS 148 (249)
T ss_pred ----ceEEEECHHHhccHHHHHH-------HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEec
Confidence 5679999888777641100 01111122233455554111 123455666666665444 3334455667
Q ss_pred CCceeEE
Q 004310 329 SRSHCLL 335 (762)
Q Consensus 329 SRSH~If 335 (762)
.|-|.|-
T Consensus 149 NRRHLv~ 155 (249)
T PF05673_consen 149 NRRHLVP 155 (249)
T ss_pred chhhccc
Confidence 7777763
No 68
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.71 E-value=28 Score=37.72 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCE
Q 004310 49 LPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNI 128 (762)
Q Consensus 49 ~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnI 128 (762)
.-+.+|+.+++.++..-......|..+..+++ ..++.|.+|++.|++. -...-++...-|.-
T Consensus 20 ~y~~~ki~~~~~~v~~kt~nlrrleaqrneln----------~kvr~lreel~~lqe~--------gsyvgev~k~m~k~ 81 (404)
T KOG0728|consen 20 QYYLQKIEELQLQVAEKTQNLRRLEAQRNELN----------AKVRLLREELQLLQEP--------GSYVGEVVKAMGKK 81 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHhcC--------cchHHHHHHhcCcc
Confidence 34788999999999888877888877777543 4466677777666542 12334556667889
Q ss_pred EEEEEeCCC
Q 004310 129 RVFCRCRPL 137 (762)
Q Consensus 129 RV~~RvRPl 137 (762)
+|.|.+.|-
T Consensus 82 kVLVKvhpe 90 (404)
T KOG0728|consen 82 KVLVKVHPE 90 (404)
T ss_pred eEEEEEcCC
Confidence 999999994
No 69
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.30 E-value=10 Score=43.94 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999776
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.18 E-value=1.1 Score=40.93 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.8
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
....++-+|++|+|||+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456889999999999776
No 71
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=77.63 E-value=1.3 Score=51.16 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=34.4
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhh--ccC--cceeEEeeccCCCCCccccC
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSV--LDG--YNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~sv--ldG--yN~~IfAYGqTGSGKTyTM~ 221 (762)
...|+||.-+... ++...|..+..+.... ..| ||. +|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeCC-cHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 4679999866533 4555666665555433 223 453 6789999999999984
No 72
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=77.44 E-value=0.9 Score=46.82 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 382 NKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 382 NkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
.....++-+.+..|.......+--...+...|.+.++.+.+ +.|+.+|--......
T Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~IiDLs~~~~~~~~ 219 (229)
T PF01935_consen 164 SSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGK-IVIIDLSGVDEEVQD 219 (229)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCC-EEEEECCCCCHHHHH
Confidence 33445555555555544433333334455555566655444 455577654444333
No 73
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=77.00 E-value=0.94 Score=53.74 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.8
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566677788999999999999999984
No 74
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.77 E-value=0.83 Score=56.46 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=21.5
Q ss_pred chhhhhhcc--CcceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLD--GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svld--GyN~~IfAYGqTGSGKTyTM 220 (762)
..++..++. |-+.|||-||++|+|||.|+
T Consensus 768 asfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 768 HGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 344555553 45567899999999999887
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.72 E-value=0.99 Score=40.50 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.6
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999884
No 76
>PRK10436 hypothetical protein; Provisional
Probab=76.68 E-value=1 Score=52.24 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=23.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455667778899999999999999984
No 77
>PF12846 AAA_10: AAA-like domain
Probab=76.52 E-value=0.98 Score=47.46 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.3
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999884
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=76.45 E-value=1.1 Score=43.73 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=18.3
Q ss_pred hccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 189 AQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 189 ~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+....++.....|..-+++-+|..|+|||+.+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33445555555777788999999999999875
No 79
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=76.40 E-value=1.1 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667777889999999999999995
No 80
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=76.07 E-value=1.1 Score=45.85 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.4
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999983
No 81
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=76.01 E-value=2.1 Score=51.81 Aligned_cols=90 Identities=28% Similarity=0.353 Sum_probs=55.1
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCC---CCCCch----hhhHHHHHHHhhcc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP---ENRGVN----YRTLEELFRVSKHR 244 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~---~~~GIi----pRal~~LF~~~~~~ 244 (762)
|....=|.|.-.|..-|+. +++.+-+|...- ..+|.|||||||||-.-- ..+-|+ -....+|+..++.-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444557788888877764 455555563222 378999999999996521 112222 12345566555444
Q ss_pred CCceeEEEEEEEEEEEccccc
Q 004310 245 NGIMRYELFVSMLEVYNEKIR 265 (762)
Q Consensus 245 ~~~~~~~V~vS~lEIYNE~I~ 265 (762)
-+...+..+|||+.-|.-..|
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred CCCCeEEEEeeecccCCcccc
Confidence 344457788999999865543
No 82
>PF13245 AAA_19: Part of AAA domain
Probab=75.99 E-value=1.2 Score=38.96 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=17.7
Q ss_pred hhhhccCcceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33334458999999999984
No 83
>PRK06921 hypothetical protein; Provisional
Probab=75.85 E-value=1.1 Score=48.00 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=25.4
Q ss_pred hHHHhccchhhhhhcc---CcceeEEeeccCCCCCccccCC
Q 004310 185 EAVFAQTKPVVTSVLD---GYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 185 ~eVf~~~~plV~svld---GyN~~IfAYGqTGSGKTyTM~G 222 (762)
..++..+...++.+-+ +..-.++-||++|+||||.+.+
T Consensus 96 ~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 96 KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3455555556665432 2345689999999999999853
No 84
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=74.99 E-value=1.1 Score=43.02 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=20.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
++..+++|.| ++..|+||||||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3445566777 7789999999999874
No 85
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.98 E-value=40 Score=36.54 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 004310 479 DEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRAFAATSTQSTLKQV 545 (762)
Q Consensus 479 ~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~~~~~~~~~~~~~~ 545 (762)
....+.+++..+...+.+....+..++.++.+|.++++.+. +|.+.++...|+....+....|-.+
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~-~r~~~l~~raRAmq~nG~~t~Yidv 122 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV-ERQELLKKRARAMQVNGTATSYIDV 122 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCChhHHHHH
Confidence 33333334444444444444445555555556665555543 4566677777776666655445443
No 86
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.08 E-value=9.8 Score=41.06 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=64.3
Q ss_pred EEEEEeCCCCcccccCCCceE---------EE-ecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhcc-chhhhh
Q 004310 129 RVFCRCRPLNKAENANGSTSV---------VE-FDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQT-KPVVTS 197 (762)
Q Consensus 129 RV~~RvRPl~~~E~~~~~~~v---------v~-~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~~-~plV~s 197 (762)
--+||+--...+|....+.+| |. .++..+..+.....+. +-.-.+..|=+-+..-++|-+.+ -|+.+.
T Consensus 100 ny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~e-kpdvsy~diggld~qkqeireavelplt~~ 178 (408)
T KOG0727|consen 100 NYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDE-KPDVSYADIGGLDVQKQEIREAVELPLTHA 178 (408)
T ss_pred ceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCC-CCCccccccccchhhHHHHHHHHhccchHH
Confidence 457888777667654433222 21 1222233333333322 12334444555555555565554 455554
Q ss_pred hc---cCcc--eeEEeeccCCCCCccccCC--------------CC---CCCCchhhhHHHHHHHhhccCC
Q 004310 198 VL---DGYN--VCIFAYGQTGTGKTFTMEG--------------TP---ENRGVNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 198 vl---dGyN--~~IfAYGqTGSGKTyTM~G--------------~~---~~~GIipRal~~LF~~~~~~~~ 246 (762)
-+ =|.+ -.++.||+.|+|||-..-. +. .-.|--||.++++|+..++...
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 33 1332 2589999999999743321 10 1136669999999999887766
No 87
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=73.60 E-value=1.4 Score=49.02 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=20.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..++.--.+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 4444444445778999999999999984
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.43 E-value=1.4 Score=47.74 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=27.1
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
-.||.+.+ |+++.+....++. .|....++-||++|+|||++..
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 35666664 4555544333333 3443357889999999999873
No 89
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.95 E-value=1.7 Score=45.64 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=19.0
Q ss_pred hhhhccCcceeEEeeccCCCCCcccc
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+...++.....++-+|+.|+|||+.+
T Consensus 35 l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 35 LEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 33334444567888999999999877
No 90
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=71.68 E-value=18 Score=36.61 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=54.4
Q ss_pred ccCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHH----------------
Q 004310 40 EFSPVQGPALP-ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHEL---------------- 102 (762)
Q Consensus 40 e~s~~~~~~~~-~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---------------- 102 (762)
+|-.+++..+- +-.++..|..+++.|+..+.....+++++.. .+.-+++...++.|..+.+.
T Consensus 72 qF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s-~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 72 QFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS-ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred hhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45545555444 3357888888888888888888888886654 33345566666655444332
Q ss_pred ---------HHHHHHHHHHHHHHHHHHhhh
Q 004310 103 ---------LKKKYVDVSSERKQLYNEVIE 123 (762)
Q Consensus 103 ---------l~~~~~~e~~~Rk~l~N~l~e 123 (762)
..++|..+...||++||++.+
T Consensus 151 pedk~~v~~~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 151 PEDKEQVYREYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555677888999998875
No 91
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=71.09 E-value=1.7 Score=49.01 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.5
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4556888999999999998
No 92
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.17 E-value=1.9 Score=48.47 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.0
Q ss_pred CcceeEEeeccCCCCCccccC
Q 004310 201 GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~ 221 (762)
--.+.|+-.|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 346889999999999999983
No 93
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=70.14 E-value=2 Score=46.09 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=21.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..++..-.+.|+-.|.||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3455565556678889999999999984
No 94
>PF13479 AAA_24: AAA domain
Probab=69.84 E-value=2 Score=44.31 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.0
Q ss_pred ceeEEeeccCCCCCccccCC
Q 004310 203 NVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~G 222 (762)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 46789999999999988754
No 95
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.36 E-value=92 Score=29.39 Aligned_cols=67 Identities=27% Similarity=0.401 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 466 LFKYKQMAEKLKQDEKETK----KLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRA 532 (762)
Q Consensus 466 ~~~~k~~~e~lk~~e~e~~----~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~ 532 (762)
+..+...++..|....++. .|+..++.++.....+...+..|+.++.++...+..++..+++.+.+.
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444443 355566677777788889999999999999999999888777766654
No 96
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=68.87 E-value=1.5 Score=44.03 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=20.3
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+...+-.|.+.+++-||+.|+|||+.|
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444444567889999999999999876
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.87 E-value=8.7 Score=40.06 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004310 48 ALPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFP-GPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKG 126 (762)
Q Consensus 48 ~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkG 126 (762)
..+...++..|+.+++.++.++..+.++.+....+--. ..+..+.+..|.++++.|++++..-..+...|-.++.+++.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888999999988888887765522211000 01133445567888888888888887777777777777765
Q ss_pred CE
Q 004310 127 NI 128 (762)
Q Consensus 127 nI 128 (762)
++
T Consensus 168 ~~ 169 (206)
T PRK10884 168 TI 169 (206)
T ss_pred HH
Confidence 44
No 98
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=68.43 E-value=1.9 Score=39.40 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.1
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999765
No 99
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=68.32 E-value=1.8 Score=44.34 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57889999999999983
No 100
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=68.12 E-value=2.4 Score=47.92 Aligned_cols=37 Identities=27% Similarity=0.625 Sum_probs=28.6
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEc
Q 004310 205 CIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYN 261 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYN 261 (762)
-|+-||.+||||||++ +.+|+..+. -.|++.++|-|+
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~n~------~~vw~n~~ecft 68 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKLNL------ENVWLNCVECFT 68 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhcCC------cceeeehHHhcc
Confidence 3589999999999987 677776632 257888888885
No 101
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=67.97 E-value=2.2 Score=43.11 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCccccCC
Q 004310 204 VCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G 222 (762)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3589999999999998754
No 102
>PRK09183 transposase/IS protein; Provisional
Probab=67.36 E-value=3.6 Score=43.94 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.5
Q ss_pred cCcceeEEeeccCCCCCccccCC
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G 222 (762)
.|.| |+-||++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4655 55789999999998853
No 103
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=67.11 E-value=1.8 Score=45.87 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=17.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..++.+ .+.|+-.|.||||||.+|
T Consensus 119 ~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 119 FLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHhhcccc-ceEEEEECCCccccchHH
Confidence 34433333 445666799999999998
No 104
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=66.95 E-value=2.1 Score=43.76 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=19.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|..++...+-.++..|..||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 445566555555666899999999998
No 105
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=65.98 E-value=13 Score=39.56 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=35.9
Q ss_pred EecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccc
Q 004310 299 QVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERV 365 (762)
Q Consensus 299 ~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~ 365 (762)
.+.+++++..++..+... ..+. + ..-|.-++.|.|.+.+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 346788888888776542 1111 1 23466788888877653 35999999998643
No 106
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.43 E-value=2.5 Score=46.68 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.3
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++..++.+. ..|+-.|.||||||++|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3455555543 55666799999999777
No 107
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.38 E-value=3.9 Score=44.34 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=24.7
Q ss_pred chhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
-++++.+.--.-+.|+-.|.|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 356777766777889999999999999984
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.53 E-value=2.5 Score=38.72 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=13.2
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999876
No 109
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.49 E-value=30 Score=34.54 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 004310 50 PILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVD 109 (762)
Q Consensus 50 ~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 109 (762)
.+-..|.+|+.++..++.++..|..++..+... ....++...+..+..+++.|..++..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSE-PTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999999998876543 33445677777777777766665544
No 110
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=62.99 E-value=3.1 Score=45.50 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=20.2
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555553 4567888999999999873
No 111
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=62.45 E-value=5.8 Score=46.60 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=63.0
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeE
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRY 250 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~ 250 (762)
.+.||.+++.+..=..+.+.+..+ ...+..|+-+|.+||||++.- ++|+. ....... .
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----a~~~~pvli~Ge~GtGK~~lA-----------~~ih~---~s~r~~~-p-- 249 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----ARSNSTVLLRGESGTGKELIA-----------KAIHY---LSPRAKR-P-- 249 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----hCcCCCEEEECCCCccHHHHH-----------HHHHH---hCCCCCC-C--
Confidence 478888888765544555443222 256778999999999998654 33332 2221111 1
Q ss_pred EEEEEEEEEEccccc-cccccCCC----CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 251 ELFVSMLEVYNEKIR-DLLVENSN----QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 251 ~V~vS~lEIYNE~I~-DLL~~~s~----~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
-|.|.|-.+..+.+- .|+..... ........-+...+|++++.++......--..+..+|+.+.
T Consensus 250 fv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 250 FVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGE 318 (534)
T ss_pred eEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCc
Confidence 122333333222222 12211100 00011111223456888888877777666666777776554
No 112
>PF14282 FlxA: FlxA-like protein
Probab=62.19 E-value=46 Score=31.03 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 475 KLKQDEKETKKLQDNLQSVQL----RLAAREHICRALQEKVKDLENQLAEERKTRIKQE 529 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~lq~----~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e 529 (762)
.++..++.++.|++++..+.. -..........|+.+|..|+.+|+....+..++.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655 2245567778899999999999987666655543
No 113
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.11 E-value=25 Score=33.83 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPG--PDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIEL 124 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~--~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~el 124 (762)
.++.|..++.++..++.+...|+.++...... +.. ......-..|..++..++.++.+.....+.||++|..+
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAE-LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677788888888888888888777743321 110 11233345678888899999999999999999999865
No 114
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=61.85 E-value=29 Score=42.47 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=27.8
Q ss_pred hhHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
.-.||..+......++ .|.|-||+.-|.+|||||.+.
T Consensus 71 ~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 71 PPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 3457766544444333 699999999999999999987
No 115
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=61.50 E-value=3.4 Score=41.48 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=16.3
Q ss_pred hhhhccCcceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444443333 45668999999998874
No 116
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=61.34 E-value=2.9 Score=44.92 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=24.6
Q ss_pred CChhHHHhccchhhhhhccC--cceeEEeeccCCCCCcccc
Q 004310 182 DNQEAVFAQTKPVVTSVLDG--YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 182 ~tQ~eVf~~~~plV~svldG--yN~~IfAYGqTGSGKTyTM 220 (762)
..|+++.+....++.....+ .-..++-||+.|+|||+..
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34666666555555443322 2223677999999999876
No 117
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=61.25 E-value=23 Score=43.28 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=28.0
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 446766554444444 699999999999999999987
No 118
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=61.03 E-value=3.6 Score=45.65 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=18.9
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++..++.+. ..|+-.|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3444444432 34788899999999998
No 119
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=60.90 E-value=7.4 Score=48.15 Aligned_cols=53 Identities=32% Similarity=0.410 Sum_probs=32.8
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEE
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSML 257 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~l 257 (762)
.+..+.+|+|+.|.| +||||||-+- ++| ++..|+..........-+.++||=+
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA--------fLp-il~~l~~~~~~~~~~~i~~lYIsPL 82 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA--------FLP-VINELLSLGKGKLEDGIYALYISPL 82 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH--------HHH-HHHHHHhccCCCCCCceEEEEeCcH
Confidence 556778999999888 9999999764 333 5566665421111222345555544
No 120
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.74 E-value=4.3 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=17.0
Q ss_pred hhccCcceeEEeeccCCCCCccccCC
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
.++++. .-++..|.||||||.++..
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344442 3456678999999998754
No 121
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=60.46 E-value=3 Score=42.31 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
-++.+|+||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 68999999999999883
No 122
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.24 E-value=1e+02 Score=26.18 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
.+++.+.+.....+..+|.+.+...+.|..++..|+.++.+.|
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666677777888888888888888888888876644
No 123
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=59.22 E-value=3.3 Score=43.82 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=15.5
Q ss_pred cceeEEeeccCCCCCccccC
Q 004310 202 YNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~ 221 (762)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 66777888899999999984
No 124
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=58.94 E-value=4.8 Score=41.87 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=14.1
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5668999999999999876
No 125
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=58.69 E-value=4.6 Score=45.21 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=26.3
Q ss_pred CCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 181 EDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 181 ~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..|..+|+.+...+. ......+|..|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~---~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE---NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH---ccCCcEEEEEcCCCCChhHHH
Confidence 3468889887533333 234456788999999999987
No 126
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=58.62 E-value=3.4 Score=37.86 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHh
Q 004310 206 IFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVS 241 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~ 241 (762)
|+-||++|.|||+.+ ...+.+|.+..
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999877 34556666554
No 127
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.23 E-value=4.3 Score=46.19 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=24.5
Q ss_pred ChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 183 NQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 183 tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+.+......+...+-.+.-..++-||+.|+|||+..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 35555554333444444555556777999999999776
No 128
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=58.16 E-value=3.8 Score=39.62 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=18.7
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHH
Q 004310 205 CIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRV 240 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~ 240 (762)
.+--.|.||+||||+- ..+.+.||..
T Consensus 55 VlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 3445799999999975 3556777753
No 129
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=58.01 E-value=3.8 Score=49.76 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=27.4
Q ss_pred hHHHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......+ -.|.|-||+-.|.+|||||.++
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 44676654444443 3789999999999999999986
No 130
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.97 E-value=4.2 Score=44.01 Aligned_cols=17 Identities=47% Similarity=0.595 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999984
No 131
>PTZ00424 helicase 45; Provisional
Probab=57.54 E-value=4.2 Score=45.34 Aligned_cols=26 Identities=42% Similarity=0.685 Sum_probs=20.3
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+..+++|.|+. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3566778999864 6689999999765
No 132
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=57.47 E-value=4.1 Score=45.56 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=19.1
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.++..++. ....|+..|.||||||.+|-
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 34444443 23347788999999999884
No 133
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=57.47 E-value=4.1 Score=38.28 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=13.2
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+.+|..|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999764
No 134
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=56.94 E-value=12 Score=45.03 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=60.7
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeE
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRY 250 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~ 250 (762)
.+.||.+.+.+..=..+.+. +..+. ..+..|+-+|.+||||++.- +++ ......... .
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~----~~~~a-~~~~pvli~Ge~GtGK~~~A-----------~~i---h~~s~r~~~-p-- 378 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHF----GRQAA-KSSFPVLLCGEEGVGKALLA-----------QAI---HNESERAAG-P-- 378 (638)
T ss_pred cccccceEECCHHHHHHHHH----HHHHh-CcCCCEEEECCCCcCHHHHH-----------HHH---HHhCCccCC-C--
Confidence 46788877654433333333 33332 45778999999999998543 222 222211111 1
Q ss_pred EEEEEEEEEEcccc-ccccccCC-CCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 251 ELFVSMLEVYNEKI-RDLLVENS-NQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 251 ~V~vS~lEIYNE~I-~DLL~~~s-~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
-|.|.|-.+..+.+ -+|+.... .........-+...+|+.++.++-.....--..+.++|+.+.
T Consensus 379 fv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 379 YIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGV 444 (638)
T ss_pred eEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCc
Confidence 12222222222222 23443210 001111112223456888888887777666666777776554
No 135
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=56.61 E-value=4.9 Score=46.12 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=19.5
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| +++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4556778988 677789999999763
No 136
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.89 E-value=5.4 Score=39.86 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=18.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3445556877 577889999999873
No 137
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.78 E-value=4.9 Score=45.68 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357888999999999998
No 138
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=55.38 E-value=7.3 Score=42.99 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=59.7
Q ss_pred cCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEE
Q 004310 174 FDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELF 253 (762)
Q Consensus 174 FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~ 253 (762)
||.+++.+..-..+.+.+ ..+ ...+.-|+-+|.+||||++.- ++++. ... +....-+.|.
T Consensus 5 ~~~liG~S~~~~~~~~~i----~~~-a~~~~pVlI~GE~GtGK~~lA-----------~~iH~---~s~-r~~~pfv~v~ 64 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV----SRL-APLDKPVLIIGERGTGKELIA-----------SRLHY---LSS-RWQGPFISLN 64 (326)
T ss_pred cCccEECCHHHHHHHHHH----HHH-hCCCCCEEEECCCCCcHHHHH-----------HHHHH---hCC-ccCCCeEEEe
Confidence 455555444444444333 222 245778899999999998654 33332 221 1111122333
Q ss_pred EEEEEEEccccc-cccccCCC----CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 254 VSMLEVYNEKIR-DLLVENSN----QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 254 vS~lEIYNE~I~-DLL~~~s~----~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
|. .+..+.+- +|+..... ........-+...+|+.++.++......--..+..+|+.+.
T Consensus 65 c~--~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 65 CA--ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred CC--CCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 33 33322222 22221100 00111222245567888888888777766677777777664
No 139
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.32 E-value=4.7 Score=46.80 Aligned_cols=63 Identities=25% Similarity=0.420 Sum_probs=40.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccCCC---------CC-----CCCchhh---------hHHHHHHHhhccCCceeE
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---------PE-----NRGVNYR---------TLEELFRVSKHRNGIMRY 250 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~G~---------~~-----~~GIipR---------al~~LF~~~~~~~~~~~~ 250 (762)
-|..+.+|.+. +|++|||||||+...++ +. ..|..|+ .+.+||..... ..|
T Consensus 104 sip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k----~~~ 177 (482)
T KOG0335|consen 104 SIPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK----FSY 177 (482)
T ss_pred ccceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh----hcc
Confidence 35566778775 99999999999998763 11 1112232 24667765554 345
Q ss_pred EEEEEEEEEEcc
Q 004310 251 ELFVSMLEVYNE 262 (762)
Q Consensus 251 ~V~vS~lEIYNE 262 (762)
.-.+-.+.+|+.
T Consensus 178 ~s~~~~~~~ygg 189 (482)
T KOG0335|consen 178 LSGMKSVVVYGG 189 (482)
T ss_pred cccceeeeeeCC
Confidence 556677788865
No 140
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.22 E-value=5.2 Score=40.24 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=18.6
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+++..++.. ...+.-.|+||||||.+|
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 444555543 334677799999999877
No 141
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.59 E-value=1.5e+02 Score=25.98 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 473 AEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 473 ~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
...++...+.|..|..+-+.+...--.....++.|..++.+++.++.+..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777766666666677777777777777776643
No 142
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=54.53 E-value=4.9 Score=36.63 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999765
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.21 E-value=4.5 Score=38.14 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.4
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999776
No 144
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.85 E-value=26 Score=41.84 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 49 LPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSF--------------PGPDVLDTLRLLSNEHELLKKKYVDVSSER 114 (762)
Q Consensus 49 ~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~~~~l~~~~~~e~~~R 114 (762)
....+.+..|...++.|+.+...|...+.++....- .+......++.+..+++.|+.++.++....
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444443321100 011234456677788888999999888888
Q ss_pred HHHHHHhhhcC
Q 004310 115 KQLYNEVIELK 125 (762)
Q Consensus 115 k~l~N~l~elk 125 (762)
..|-+++.+++
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 88888877766
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=53.84 E-value=6.5 Score=43.44 Aligned_cols=28 Identities=36% Similarity=0.351 Sum_probs=18.9
Q ss_pred hhhhhccC-cceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDG-YNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldG-yN~~IfAYGqTGSGKTyTM~ 221 (762)
++...+.+ ----.+-||+.|+|||.|..
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 33333433 33346789999999999973
No 146
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=53.67 E-value=7.7 Score=46.00 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=64.8
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhh----ccCCc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSK----HRNGI 247 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~----~~~~~ 247 (762)
|.||.+++.+..=..+. ..+.. +...+..|+-+|.+||||++.- ++++..|.... .+...
T Consensus 216 ~~f~~iiG~S~~m~~~~----~~i~~-~A~s~~pVLI~GE~GTGKe~~A-----------~~IH~~~~~~~~~~S~r~~~ 279 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVR----QTILL-YARSSAAVLIQGETGTGKELAA-----------QAIHREYFARHDARQGKKSH 279 (538)
T ss_pred cchhheeeCCHHHHHHH----HHHHH-HhCCCCcEEEECCCCCCHHHHH-----------HHHHHhhcccccccCccCCC
Confidence 66777766544222222 22222 3456789999999999998543 55555432111 11111
Q ss_pred eeEEEEEEEEEEEcccccc-ccccCCC--CC---CccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcc
Q 004310 248 MRYELFVSMLEVYNEKIRD-LLVENSN--QP---SKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVR 317 (762)
Q Consensus 248 ~~~~V~vS~lEIYNE~I~D-LL~~~s~--~~---~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R 317 (762)
.-+.|.|+. +..+.+-. |+..... .. ..+...-+...+|+.++.++.+.+..--..+.++|+.+.-.|
T Consensus 280 pfv~inCaa--l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 280 PFVAVNCGA--IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred CeEEeeccc--CChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 122233332 22222222 2211000 00 012223334567889998888888777777777776654333
No 147
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=53.43 E-value=6.1 Score=40.11 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=14.9
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
..-..||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34467899999999999776
No 148
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=52.93 E-value=5.4 Score=40.07 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999965
No 149
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=52.78 E-value=1.2e+02 Score=31.11 Aligned_cols=51 Identities=33% Similarity=0.510 Sum_probs=28.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 472 MAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 472 ~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
+.+.++...+.+..+++++..++.++...++.++.++++..+|-++.....
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555566666666666666666666666655555554433
No 150
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.70 E-value=1.2e+02 Score=29.88 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=36.2
Q ss_pred HHHhHhhccccCCCcc--ccchhHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 444 NFASRVRGIESGPARK--QSDISELFKYKQM-AEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 444 rFAsrak~I~~~p~~~--~~~~~~~~~~k~~-~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+|.+++..+..-|... ..+...+.+.+.. ...+....+.+..|+.++...+..+......++.|+..++.++.++.+
T Consensus 1 rl~~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 1 RLLRRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred ChHhhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777755544432 2222333332222 222333444455555555555555555555555555555544444433
No 151
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=52.67 E-value=7.2 Score=43.66 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=21.2
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.++-.++++. +-|+-.|.||||||.++-
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 4455555665 778999999999998763
No 152
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.63 E-value=6 Score=44.92 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=20.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556778887 788899999999864
No 153
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=51.98 E-value=6 Score=42.77 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.8
Q ss_pred cCc-ceeEEeeccCCCCCccccC
Q 004310 200 DGY-NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 200 dGy-N~~IfAYGqTGSGKTyTM~ 221 (762)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3567779999999999873
No 154
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.56 E-value=5.9 Score=44.08 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=19.4
Q ss_pred chhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..++..++.+. ..|+..|.||||||.+|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34455444433 34777899999999988
No 155
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=51.42 E-value=79 Score=36.58 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004310 49 LPILQKIACLSSEIENLKRDHTSLLHHVKSISTDS---FPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELK 125 (762)
Q Consensus 49 ~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elk 125 (762)
..+..++..|..+++.++.++..+...+..+.... ....+....+..+...+..|.+++.+...+...|.+++....
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~ 409 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERSY 409 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677888899999999988888888776544311 112345667778888888888888888888899999999883
Q ss_pred --CCEEEEEEeCC
Q 004310 126 --GNIRVFCRCRP 136 (762)
Q Consensus 126 --GnIRV~~RvRP 136 (762)
+.|.|.=++.|
T Consensus 410 ~~~~I~v~~~vyp 422 (451)
T PF03961_consen 410 KEARIKVRKRVYP 422 (451)
T ss_pred cceEEEECCEEEC
Confidence 33444444555
No 156
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.70 E-value=6.5 Score=44.61 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=19.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.|+ ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 45567889885 55669999999864
No 157
>PRK13764 ATPase; Provisional
Probab=50.68 E-value=6 Score=47.44 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.6
Q ss_pred cceeEEeeccCCCCCccccC
Q 004310 202 YNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~ 221 (762)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34458999999999999984
No 158
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.61 E-value=60 Score=37.98 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 471 QMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 471 ~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
+...+..+.++++..++.+++.+.......++.++.+++++..|+.|+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555554444444444444444444444444443
No 159
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.23 E-value=1.9e+02 Score=31.13 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 482 ETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 482 e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
.+++++.++..+...+.+.+.....++.++..++..+++.
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 160
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.14 E-value=6.8 Score=44.37 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=15.7
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
...|.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466789999999999983
No 161
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=49.73 E-value=7.7 Score=44.66 Aligned_cols=25 Identities=44% Similarity=0.690 Sum_probs=20.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|..+++|.| |++-++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4567788988 677789999999874
No 162
>PRK04195 replication factor C large subunit; Provisional
Probab=49.64 E-value=7.9 Score=45.01 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=24.4
Q ss_pred hHHHhccchhhhhhccCc-ceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVLDGY-NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svldGy-N~~IfAYGqTGSGKTyTM 220 (762)
+++-+.....+.....|. .-.++-||+.|+|||++.
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333334445555555554 456888999999999877
No 163
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=49.38 E-value=9.7 Score=40.43 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=28.0
Q ss_pred eCCCCChhHHHhccchhhhhhcc-C-cceeEEeeccCCCCCccc
Q 004310 178 FKPEDNQEAVFAQTKPVVTSVLD-G-YNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 178 F~~~~tQ~eVf~~~~plV~svld-G-yN~~IfAYGqTGSGKTyT 219 (762)
|++-..|+.+-...+.+++.+.. | .=..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34445688998887788887754 2 233578899999999843
No 164
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=49.31 E-value=7 Score=46.15 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=23.8
Q ss_pred ccchhhhhhccCcc--eeEEeeccCCCCCcccc
Q 004310 190 QTKPVVTSVLDGYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 190 ~~~plV~svldGyN--~~IfAYGqTGSGKTyTM 220 (762)
+++..++..+.|.. ..++-+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 45667777665553 46788999999999987
No 165
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=49.01 E-value=9.5 Score=46.57 Aligned_cols=43 Identities=28% Similarity=0.405 Sum_probs=32.0
Q ss_pred CeeeCCCCChhHHHhc-c------chhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 175 DYVFKPEDNQEAVFAQ-T------KPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 175 D~VF~~~~tQ~eVf~~-~------~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++-+++++-|..+|.. . ..+++.+| |.|+.|.+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 5566677777777743 1 35899999 99986655 9999999853
No 166
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=48.99 E-value=8.6 Score=46.72 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=19.3
Q ss_pred chhhhhhcc-----CcceeEEeeccCCCCCccccCC
Q 004310 192 KPVVTSVLD-----GYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 192 ~plV~svld-----GyN~~IfAYGqTGSGKTyTM~G 222 (762)
..++.++.. |.+.+++.. .||||||+||..
T Consensus 248 ~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 248 KKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 345555554 344455443 899999999963
No 167
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.51 E-value=7.2 Score=41.38 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.-++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 44778999999999887
No 168
>PRK06547 hypothetical protein; Provisional
Probab=48.44 E-value=8.6 Score=38.63 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=17.9
Q ss_pred hhhhccCcceeEEeeccCCCCCcccc
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..+..+.-.-|.-+|.+|||||+.-
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34444445555677799999999765
No 169
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=48.31 E-value=9.3 Score=46.58 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=28.0
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 357776554444444 699999999999999999886
No 170
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=48.30 E-value=13 Score=43.71 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=61.2
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEE
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYEL 252 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V 252 (762)
.|+.+.+....=..+++.+ .. +...+..|+-+|.+||||++.- ++++.. ...... . -|
T Consensus 185 ~~~~iig~s~~~~~~~~~i----~~-~a~~~~pVlI~Ge~GtGK~~~A-----------~~ih~~---s~r~~~--p-~v 242 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI----EV-VAASDLNVLILGETGVGKELVA-----------RAIHAA---SPRADK--P-LV 242 (509)
T ss_pred cCCceeecCHHHHHHHHHH----HH-HhCCCCcEEEECCCCccHHHHH-----------HHHHHh---CCcCCC--C-eE
Confidence 5666666544333444332 22 3456889999999999998654 333332 221111 1 23
Q ss_pred EEEEEEEEccccc-cccccCCC----CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 253 FVSMLEVYNEKIR-DLLVENSN----QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 253 ~vS~lEIYNE~I~-DLL~~~s~----~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
.|.|-.+..+.+- .|+..... ........-+..++|++++.++-.....--..+.++|+.+.
T Consensus 243 ~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~ 309 (509)
T PRK05022 243 YLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE 309 (509)
T ss_pred EEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCC
Confidence 3333333332222 22221100 00011111234567888888888887666667777776554
No 171
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=47.71 E-value=82 Score=34.92 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 004310 49 LPILQKIACLSSEIENLKRDHTSLLHHVKSISTDS 83 (762)
Q Consensus 49 ~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~ 83 (762)
....-.+..|+.+++.|..|...|+.++..+..+.
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34556678899999999999999999988777553
No 172
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=47.55 E-value=9.7 Score=46.41 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=27.2
Q ss_pred hHHHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......+ -.|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 45676654433333 3699999999999999999987
No 173
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.24 E-value=8.4 Score=42.88 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=13.8
Q ss_pred ceeEEeeccCCCCCccc
Q 004310 203 NVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyT 219 (762)
.+-|+..|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34578899999999964
No 174
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=47.21 E-value=9.9 Score=46.30 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=26.6
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 346665443333333 689999999999999999987
No 175
>PRK10536 hypothetical protein; Provisional
Probab=47.12 E-value=8.7 Score=41.51 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=28.4
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|.|-.|-+-+..|..... .+.+ +.-++..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 4666666666666655444 2233 348899999999999876
No 176
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=47.07 E-value=25 Score=42.83 Aligned_cols=41 Identities=32% Similarity=0.539 Sum_probs=29.0
Q ss_pred hhhhhhc--cCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc
Q 004310 193 PVVTSVL--DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH 243 (762)
Q Consensus 193 plV~svl--dGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~ 243 (762)
..+.+++ +|--+|+.--|..|||||.|+. ..+..|-...++
T Consensus 410 ~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~----------~Vm~~Lq~~s~~ 452 (767)
T KOG1514|consen 410 DFLRSFISDQGLGSCMYISGVPGTGKTATVL----------EVMKELQTSSAQ 452 (767)
T ss_pred HHHHhhcCCCCCceeEEEecCCCCCceehHH----------HHHHHHHHHHhh
Confidence 3444444 4777799999999999999984 456666654443
No 177
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.77 E-value=1.1e+02 Score=37.55 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 499 AREHICRALQEKVKDLENQLAEERKTRIKQETRA 532 (762)
Q Consensus 499 ~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~ 532 (762)
..|..+.+.+.....+|.||.+||+.+.+.|..+
T Consensus 492 ~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~a 525 (697)
T PF09726_consen 492 QLEKRLAEERRQRASLEKQLQEERKARKEEEEKA 525 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 4455556666667778888988888877766543
No 178
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.77 E-value=1.2e+02 Score=33.54 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 473 AEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 473 ~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
.+.+.....++...+.++..++.++...+..++.+.++..++..++++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444443
No 179
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=46.41 E-value=11 Score=46.19 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=26.7
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346665443333333 689999999999999999987
No 180
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=46.12 E-value=11 Score=46.02 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=27.1
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 346765544344433 699999999999999999987
No 181
>PHA00729 NTP-binding motif containing protein
Probab=45.87 E-value=9.8 Score=40.25 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
++..+..|-=..|+.+|.+|+||||...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3444433222479999999999998764
No 182
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=45.76 E-value=11 Score=45.94 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.5
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 346766544444433 799999999999999999987
No 183
>PRK11637 AmiB activator; Provisional
Probab=45.54 E-value=1.4e+02 Score=34.13 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+.++..++.++..++.++...+..+..++.++.+++.++..
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
No 184
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=45.40 E-value=8.9 Score=41.64 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 35788999999998654
No 185
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=45.33 E-value=12 Score=45.72 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=27.0
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 346665544333333 699999999999999999987
No 186
>PRK11637 AmiB activator; Provisional
Probab=45.25 E-value=1.6e+02 Score=33.74 Aligned_cols=34 Identities=12% Similarity=0.365 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 487 QDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 487 ~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
..++..++.++...+..+..++.++..++.++.+
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444443
No 187
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=45.24 E-value=7 Score=50.23 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=0.0
Q ss_pred Hhc--cchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 188 FAQ--TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 188 f~~--~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
|+. +..+++.+.+|...+++. .+||||||+||.+
T Consensus 417 YQ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 417 YQEDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 188
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=45.21 E-value=8.3 Score=42.32 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=23.5
Q ss_pred ChhHHHhccchhhhhhcc--CcceeEEeeccCCCCCccccC
Q 004310 183 NQEAVFAQTKPVVTSVLD--GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 183 tQ~eVf~~~~plV~svld--GyN~~IfAYGqTGSGKTyTM~ 221 (762)
.|+++-+....++..... +.-..++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 344544444444444322 222357789999999998874
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.68 E-value=1.5e+02 Score=26.00 Aligned_cols=44 Identities=34% Similarity=0.407 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHH
Q 004310 54 KIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKY 107 (762)
Q Consensus 54 ~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 107 (762)
-|.-|+-+|..||.+..+|.+++++. ....+.|..+++.|+..-
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~----------q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNA----------QHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777643 234455556666665443
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=44.48 E-value=13 Score=46.65 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=27.7
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcc------eeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYN------VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN------~~IfAYGqTGSGKTyTM 220 (762)
.-+++|++. ...-..+...|..+..|.+ ++++-+|++|+|||++.
T Consensus 565 ~l~~~viGQ----~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIGQ----NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeCC----HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 446677764 4444443333444333322 57788899999999976
No 191
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.45 E-value=11 Score=43.71 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=19.9
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 355678889975 55679999999764
No 192
>PF05729 NACHT: NACHT domain
Probab=44.31 E-value=10 Score=35.97 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999877
No 193
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=44.19 E-value=11 Score=46.17 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=26.7
Q ss_pred HHHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 186 AVFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 186 eVf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||..+......+ -.|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 4666554434433 3799999999999999999987
No 194
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.11 E-value=11 Score=43.08 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=33.3
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
+||.|++ |+.+.....++-.-+-.|.=...+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4555554 777887777776777778888899999999999964
No 195
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=44.02 E-value=9.1 Score=35.92 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
++-||.+|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999876
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=43.91 E-value=20 Score=40.59 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=27.6
Q ss_pred eee-cC-eeeCCCCChhHHHhccchhhhhhccC---cceeEEeeccCCCCCcccc
Q 004310 171 QFK-FD-YVFKPEDNQEAVFAQTKPVVTSVLDG---YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~-FD-~VF~~~~tQ~eVf~~~~plV~svldG---yN~~IfAYGqTGSGKTyTM 220 (762)
.|. || .||+.+...+.+.+ .+.....| .+..+.-.|++|||||...
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~----~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVN----YFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eccccchhccCcHHHHHHHHH----HHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 443 45 68875444443333 33333333 4566888999999999644
No 197
>PLN03025 replication factor C subunit; Provisional
Probab=43.57 E-value=9.2 Score=41.86 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.3
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++-||+.|+|||++..
T Consensus 36 ~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 36 NLILSGPPGTGKTTSIL 52 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35669999999999884
No 198
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=43.30 E-value=9.7 Score=46.77 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=26.4
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
+||.+++ |+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4555543 44444332233333334444567889999999998873
No 199
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=43.25 E-value=12 Score=45.67 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=27.0
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 346665544333333 799999999999999999886
No 200
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.01 E-value=14 Score=41.71 Aligned_cols=74 Identities=20% Similarity=0.440 Sum_probs=42.2
Q ss_pred ecCeeeCCCCChhHHHhcc-chhhhh-hcc--Ccc--eeEEeeccCCCCCccccC--------------CCC---CCCCc
Q 004310 173 KFDYVFKPEDNQEAVFAQT-KPVVTS-VLD--GYN--VCIFAYGQTGTGKTFTME--------------GTP---ENRGV 229 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~-~plV~s-vld--GyN--~~IfAYGqTGSGKTyTM~--------------G~~---~~~GI 229 (762)
+|+.|=+-+..-+++.+.+ -||.+- .+. |.. -.|+-||+.|+|||-.-- |+. .--|=
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 3344434333344455443 344432 221 333 258999999999985331 110 01244
Q ss_pred hhhhHHHHHHHhhccCC
Q 004310 230 NYRTLEELFRVSKHRNG 246 (762)
Q Consensus 230 ipRal~~LF~~~~~~~~ 246 (762)
=+|.+++||....++..
T Consensus 229 GaRlVRelF~lArekaP 245 (406)
T COG1222 229 GARLVRELFELAREKAP 245 (406)
T ss_pred chHHHHHHHHHHhhcCC
Confidence 48999999999888766
No 201
>PRK09039 hypothetical protein; Validated
Probab=42.77 E-value=1.9e+02 Score=32.43 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 476 LKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 476 lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
+.....++..|+.++..++..+.+.+...+..+.++.+|+.+|...-
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666666777777766666643
No 202
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=42.62 E-value=9.7 Score=40.82 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.2
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344444788999999999877
No 203
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.44 E-value=9.8 Score=43.96 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=20.5
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+..+++|.|+.+ .++||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45677889999755 559999999765
No 204
>PRK00131 aroK shikimate kinase; Reviewed
Probab=42.41 E-value=11 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.+|+-+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999764
No 205
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=42.31 E-value=9.3 Score=41.49 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.3
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388999999999999999643
No 206
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=41.97 E-value=94 Score=33.88 Aligned_cols=30 Identities=37% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004310 96 LSNEHELLKKKYVDVSSERKQLYNEVIELK 125 (762)
Q Consensus 96 l~~~~~~l~~~~~~e~~~Rk~l~N~l~elk 125 (762)
....|++|+++|.+|..+||+|--++..|.
T Consensus 160 ~~sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 160 SDSKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 357899999999999999999999988877
No 207
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.95 E-value=1.9e+02 Score=31.73 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 004310 508 QEKVKDLENQLA 519 (762)
Q Consensus 508 ~e~~~~Le~ql~ 519 (762)
+|+-...|.||+
T Consensus 107 EEECHRVEAQLA 118 (305)
T PF15290_consen 107 EEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.64 E-value=11 Score=43.46 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.5
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
+|+-.|+||+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999984
No 209
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.63 E-value=1.5e+02 Score=25.56 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 483 TKKLQDNLQSVQLRLAAREHICRALQEKVKDLE 515 (762)
Q Consensus 483 ~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le 515 (762)
+.-+.+.++.+...+...+..+..|+.++..|.
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433334444444443333
No 210
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=41.19 E-value=11 Score=39.69 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.4
Q ss_pred ceeEEeeccCCCCCccccCCC
Q 004310 203 NVCIFAYGQTGTGKTFTMEGT 223 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~G~ 223 (762)
...++-||..|+|||++.-+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999987543
No 211
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.15 E-value=64 Score=33.01 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELK 125 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elk 125 (762)
..|..|...+..|+.++..|..++++.... ...+.+++..|.-++..+.+++.+-..+.+.|...+++.+
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~---~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKA---NEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432211 0123444445555555566666666777777777766554
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=40.74 E-value=12 Score=45.36 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=19.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4566778877 677889999999874
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.74 E-value=14 Score=42.54 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999983
No 214
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=40.71 E-value=17 Score=42.04 Aligned_cols=20 Identities=35% Similarity=0.317 Sum_probs=16.6
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
+.-..|+-+|.+|+|||+|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CCCeEEEEECCCCCcHHHHH
Confidence 33567888999999999997
No 215
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.71 E-value=2e+02 Score=35.48 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 483 TKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETR 531 (762)
Q Consensus 483 ~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~ 531 (762)
+..++.+.+.++.++.......+.=.+.+..||.+|.+|++.+...|..
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQ 510 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQ 510 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555444444444455666666666666666555543
No 216
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.42 E-value=1e+02 Score=25.82 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSIST 81 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~~ 81 (762)
.||+.|..+|+.|+.+...|.+++..+..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999886653
No 217
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.29 E-value=11 Score=40.69 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=19.5
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
-+++..+.. +-.++-+|++|+|||-++
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 355555543 556789999999999776
No 218
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.18 E-value=2.4e+02 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 491 QSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 491 ~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
.+++.+++..+.....|+++..+|.++++..
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555666666666665553
No 219
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=40.17 E-value=3.3e+02 Score=29.19 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=17.4
Q ss_pred CCCCCCcccccchhhhcCCCCCCC
Q 004310 554 KPPLAPSKMRMPLRRISNFVPPQS 577 (762)
Q Consensus 554 k~~~~~~~~~~~~~~~~~~~~~~~ 577 (762)
-.+.+|.-+-.+|++.-.+-|||+
T Consensus 206 gl~~spyL~A~~l~~~M~~~pppp 229 (265)
T PF06409_consen 206 GLPYSPYLMAEALQREMGHQPPPP 229 (265)
T ss_pred CCcCchHHhHHHHHHhhCCCCcCC
Confidence 577888777788877767666554
No 220
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=40.03 E-value=11 Score=35.85 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 221
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.88 E-value=2.8e+02 Score=30.81 Aligned_cols=16 Identities=6% Similarity=0.299 Sum_probs=8.8
Q ss_pred CCCchhhhHHHHHHHh
Q 004310 226 NRGVNYRTLEELFRVS 241 (762)
Q Consensus 226 ~~GIipRal~~LF~~~ 241 (762)
++..-|-.+++.|+.+
T Consensus 8 ~~~~~~isL~~FL~~~ 23 (325)
T PF08317_consen 8 DEDYEPISLQDFLNMT 23 (325)
T ss_pred cCCCCCcCHHHHHHHh
Confidence 3445555666666543
No 222
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.88 E-value=13 Score=44.36 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=20.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4567889998 456789999999764
No 223
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=39.82 E-value=1.7e+02 Score=27.59 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=31.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 470 KQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 470 k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+.+.+.+.+.++.+..+-+++..++..+....+....|+-+...|...|.+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777777777666666666666666555555555544
No 224
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=39.75 E-value=16 Score=45.03 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.4
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556778899999999876
No 225
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.71 E-value=16 Score=37.00 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...+.-||.+|||||.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567889999999999654
No 226
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=39.38 E-value=13 Score=41.35 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.3
Q ss_pred EEeeccCCCCCccccC
Q 004310 206 IFAYGQTGTGKTFTME 221 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~ 221 (762)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3459999999999774
No 227
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=39.25 E-value=14 Score=39.97 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.8
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|++..|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999665
No 228
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.10 E-value=1.3e+02 Score=35.27 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 466 LFKYKQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 466 ~~~~k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
.+..+.....+.+.+....+|+++++.++.++.........+++++++++.++..-
T Consensus 61 ~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 61 TFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344444556666667777777777776666555555566677776666665543
No 229
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.92 E-value=30 Score=42.63 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=16.8
Q ss_pred CCCCchhhhHHHHHHHhhccCC
Q 004310 225 ENRGVNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 225 ~~~GIipRal~~LF~~~~~~~~ 246 (762)
+..|++-|++.+|...+.....
T Consensus 785 DSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 785 DSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CccccHHHHHHHHHHHhhcccC
Confidence 3468999999999988775543
No 230
>PF13173 AAA_14: AAA domain
Probab=38.90 E-value=13 Score=34.93 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.3
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999887
No 231
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=38.77 E-value=17 Score=42.66 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=19.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 4566788987 577779999999764
No 232
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.72 E-value=2.7e+02 Score=27.35 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 475 KLKQDEKETKKLQDNLQSVQLRLAAREH 502 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~lq~~l~~~e~ 502 (762)
+++..+.....+..++..++.+....+.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~ 49 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEE 49 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 233
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=38.66 E-value=21 Score=41.07 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.6
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999873
No 234
>PRK00846 hypothetical protein; Provisional
Probab=38.56 E-value=2.6e+02 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 485 KLQDNLQSVQLRLAAREHICRALQEKVKDL 514 (762)
Q Consensus 485 ~L~~~l~~lq~~l~~~e~~~~~l~e~~~~L 514 (762)
-..+-++.+...+...+..+..|+++++.|
T Consensus 24 fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 24 FQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344433333333333343333333
No 235
>PHA02653 RNA helicase NPH-II; Provisional
Probab=38.45 E-value=16 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
++..+++|.+ |+..|+||||||..
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhH
Confidence 4555667765 48899999999954
No 236
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=38.37 E-value=14 Score=36.51 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999753
No 237
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.33 E-value=3.2e+02 Score=30.37 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 473 AEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLE 515 (762)
Q Consensus 473 ~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le 515 (762)
.++++..+++...+.+++..++.+....+..+..++++..+++
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555544444444444444444443
No 238
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.31 E-value=13 Score=43.62 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
.+|.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 478889999999999983
No 239
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=38.31 E-value=13 Score=42.48 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
+--++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345788999999999765
No 240
>PRK04325 hypothetical protein; Provisional
Probab=38.28 E-value=2.3e+02 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004310 487 QDNLQSVQLRLAAREHICRALQ 508 (762)
Q Consensus 487 ~~~l~~lq~~l~~~e~~~~~l~ 508 (762)
.+.++.+...+...+..+..|+
T Consensus 22 E~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 22 EDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 241
>PRK07261 topology modulation protein; Provisional
Probab=38.12 E-value=14 Score=36.85 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999654
No 242
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=37.76 E-value=16 Score=40.99 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=14.0
Q ss_pred EEeeccCCCCCccccC
Q 004310 206 IFAYGQTGTGKTFTME 221 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~ 221 (762)
++.+|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 243
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=37.69 E-value=13 Score=36.48 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45677999999999877
No 244
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=37.63 E-value=17 Score=44.21 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=26.5
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.+|+.+......++ .|.|-||+.-|.+|||||.|+
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346665433333333 589999999999999999987
No 245
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=37.55 E-value=15 Score=43.43 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=25.9
Q ss_pred eEEeeccCCCCCccccCC---CCC---CCCchhhhHHHHHHHhh
Q 004310 205 CIFAYGQTGTGKTFTMEG---TPE---NRGVNYRTLEELFRVSK 242 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G---~~~---~~GIipRal~~LF~~~~ 242 (762)
.||..|+|.|||||--.- ... -.|=+-....++|+...
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~n 236 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLN 236 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhh
Confidence 399999999999997642 111 13445566678887554
No 246
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.46 E-value=13 Score=31.53 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.5
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999766
No 247
>PRK02119 hypothetical protein; Provisional
Probab=37.29 E-value=2.6e+02 Score=24.45 Aligned_cols=29 Identities=10% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 487 QDNLQSVQLRLAAREHICRALQEKVKDLE 515 (762)
Q Consensus 487 ~~~l~~lq~~l~~~e~~~~~l~e~~~~Le 515 (762)
.+.+..++.+++-.+..+..|.+.+....
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq 36 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQ 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 248
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=37.08 E-value=14 Score=40.09 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCC----ccCC--CCchhhhccccc----CCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCC
Q 004310 390 DVISALASKSGH----IPYR--NSKLTHILQSSL----GGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGP 456 (762)
Q Consensus 390 ~VI~ALa~k~~h----IPYR--dSKLT~LLqdsL----gGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p 456 (762)
-|+.||+..... =||- |.---.-||+-+ ..-++|+++|| .+.+|. ++.|+|+--+..|.
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-----HDidEA---~kLadri~vm~~G~ 213 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-----HDIDEA---LKLADRIAVMDAGE 213 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-----cCHHHH---HhhhceEEEecCCe
Confidence 477888765442 2442 111111233322 33468999997 466665 68899987666554
No 249
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=37.04 E-value=16 Score=42.55 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=22.5
Q ss_pred cCCCceeeEEEecCCCCCChHhhHHHHHHHh--HhhccccCC
Q 004310 417 LGGDCKTLMFVQISPSSSDLGETLCSLNFAS--RVRGIESGP 456 (762)
Q Consensus 417 LgGnskT~mI~~ISP~~~~~~ETLsTLrFAs--rak~I~~~p 456 (762)
+.-..+..+|+|.+..... +..|.+|- |-.-|...|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 4556789999999887654 44555554 344444444
No 250
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=36.92 E-value=19 Score=37.06 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.6
Q ss_pred hhhhhhccC---cceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDG---YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldG---yN~~IfAYGqTGSGKTyTM 220 (762)
+-++.++.| ...++.-||++|||||.-+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456677775 4567889999999999765
No 251
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=36.58 E-value=16 Score=40.09 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.7
Q ss_pred ccCcceeEEeeccCCCCCccccC
Q 004310 199 LDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 199 ldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
-.+-+..++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 45677789999999999999984
No 252
>PRK04328 hypothetical protein; Provisional
Probab=36.47 E-value=19 Score=38.11 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=21.7
Q ss_pred chhhhhhccC---cceeEEeeccCCCCCcc
Q 004310 192 KPVVTSVLDG---YNVCIFAYGQTGTGKTF 218 (762)
Q Consensus 192 ~plV~svldG---yN~~IfAYGqTGSGKTy 218 (762)
-+-++.++.| ....++-+|.+|||||.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 3457777876 57889999999999974
No 253
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.39 E-value=2.5e+02 Score=24.50 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 486 LQDNLQSVQLRLAAREHICRALQEKV 511 (762)
Q Consensus 486 L~~~l~~lq~~l~~~e~~~~~l~e~~ 511 (762)
+.+.++.+...+...+..+..|+.++
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 254
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=36.29 E-value=17 Score=44.91 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=27.2
Q ss_pred hHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 346766544344433 699999999999999999987
No 255
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.20 E-value=15 Score=41.98 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
..-|.-.|+||-|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 556777899999999998
No 256
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=36.19 E-value=10 Score=42.57 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=29.4
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..|.|+.|-+. +++= ..++..+.+-.-+.|+-+|.+|||||+.+
T Consensus 12 ~~~pf~~ivGq----~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----HHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 46888888774 3322 23444444433346889999999999987
No 257
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=36.08 E-value=17 Score=40.66 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.6
Q ss_pred hhhccCcceeEEeeccCCCCCcccc
Q 004310 196 TSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 196 ~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+.+.+|.+..++..++||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 4567788777888999999999874
No 258
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.05 E-value=2.3e+02 Score=26.67 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=7.1
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 004310 475 KLKQDEKETKKLQDNLQSV 493 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~l 493 (762)
.|+..+..+++++.+++.+
T Consensus 34 ~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 34 QLKEKEQALRKLEQENDSL 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 259
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=35.63 E-value=16 Score=34.19 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.5
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999653
No 260
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=35.34 E-value=15 Score=45.29 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
|.-++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4456788999999999983
No 261
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.33 E-value=1.2e+02 Score=32.29 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEE
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRV 130 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV 130 (762)
.-++++.+..+-+.|..++..|..+++.+..+ .......+.....+.+.|+.........++.|.--+.++-+.+.-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~---~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVY---NEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777788888888888887766554 244677788888899999999988888888887776666666666
Q ss_pred EEEeC-CCCc
Q 004310 131 FCRCR-PLNK 139 (762)
Q Consensus 131 ~~RvR-Pl~~ 139 (762)
|+.-- |+..
T Consensus 117 ~v~~d~Pf~~ 126 (251)
T PF11932_consen 117 FVELDLPFLL 126 (251)
T ss_pred HHhcCCCCCh
Confidence 55533 4443
No 262
>PRK00295 hypothetical protein; Provisional
Probab=35.32 E-value=2.6e+02 Score=24.08 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 004310 494 QLRLAARE 501 (762)
Q Consensus 494 q~~l~~~e 501 (762)
+.+++-.+
T Consensus 11 E~kla~qE 18 (68)
T PRK00295 11 ESRQAFQD 18 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 263
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.31 E-value=15 Score=44.46 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=22.7
Q ss_pred hhHHHhccchhhhhhccCc--ceeEEeeccCCCCCccccC
Q 004310 184 QEAVFAQTKPVVTSVLDGY--NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 184 Q~eVf~~~~plV~svldGy--N~~IfAYGqTGSGKTyTM~ 221 (762)
|......+..++..+.-+. .-.++-||++|+|||.++.
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3333333444444443222 1247889999999999874
No 264
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=35.28 E-value=14 Score=35.87 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.2
Q ss_pred EEeeccCCCCCccc
Q 004310 206 IFAYGQTGTGKTFT 219 (762)
Q Consensus 206 IfAYGqTGSGKTyT 219 (762)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999854
No 265
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=35.23 E-value=16 Score=36.11 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.9
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 266
>PRK08118 topology modulation protein; Reviewed
Probab=35.19 E-value=16 Score=36.25 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=12.1
Q ss_pred EEeeccCCCCCccc
Q 004310 206 IFAYGQTGTGKTFT 219 (762)
Q Consensus 206 IfAYGqTGSGKTyT 219 (762)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 267
>PRK04406 hypothetical protein; Provisional
Probab=35.09 E-value=3e+02 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 486 LQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 486 L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
+.+.+..++.+++-.+..+..|.+.+.....++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333
No 268
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=34.95 E-value=15 Score=42.85 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=29.0
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhh-hc----cCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTS-VL----DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~s-vl----dGyN~~IfAYGqTGSGKTyTM 220 (762)
...+||.|.+.+...+.+.+.+..+-.. .+ ....-.|+-||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 3577888877655444443322211100 01 112235888999999999886
No 269
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.92 E-value=18 Score=39.20 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=21.7
Q ss_pred chhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||+ ..+.--+..+--||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 445667778899999999999877
No 270
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=34.86 E-value=17 Score=34.51 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999654
No 271
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=34.85 E-value=17 Score=44.06 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++-.|+.|+|||||+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45689999999999985
No 272
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.80 E-value=1.9e+02 Score=31.00 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 481 KETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLA 519 (762)
Q Consensus 481 ~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ 519 (762)
.++++|.++.+.++.+-.....+.+.|-.+..+|...|.
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444444333333333333333333433333
No 273
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=34.75 E-value=17 Score=43.72 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..++.|.|+.+ .++||||||.+.
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 4556788988755 479999999754
No 274
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.70 E-value=22 Score=39.36 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|.-.|++|+|||.|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346667799999999998
No 275
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=34.31 E-value=16 Score=36.00 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+|+-.|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999877
No 276
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.29 E-value=15 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.7
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
.-+|+-.|.||||||+.|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457888999999999984
No 277
>PRK00736 hypothetical protein; Provisional
Probab=34.19 E-value=2.8e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004310 489 NLQSVQLRLAAREHICRALQEKV 511 (762)
Q Consensus 489 ~l~~lq~~l~~~e~~~~~l~e~~ 511 (762)
.++.+...+...+..+..|+.++
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 278
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=33.99 E-value=18 Score=39.03 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
+|...|++|+|||.|..
T Consensus 74 vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIA 90 (272)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 45555999999999973
No 279
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=33.86 E-value=19 Score=42.89 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=20.2
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+|..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 355678899985 55569999999874
No 280
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.80 E-value=3.3e+02 Score=31.87 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=7.9
Q ss_pred CCchhhhHHHHHH
Q 004310 227 RGVNYRTLEELFR 239 (762)
Q Consensus 227 ~GIipRal~~LF~ 239 (762)
.||+++.+..-|.
T Consensus 190 ~gi~t~~c~Hsfh 202 (493)
T KOG0804|consen 190 TGILTILCNHSFH 202 (493)
T ss_pred cceeeeecccccc
Confidence 4666666666664
No 281
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.60 E-value=2.7e+02 Score=31.03 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=7.9
Q ss_pred ChHHHHHHHHHHhh
Q 004310 302 GTEEVWELLKSGAR 315 (762)
Q Consensus 302 S~ee~~~lL~~G~~ 315 (762)
+..|+.+.|..|..
T Consensus 71 sC~EL~~~I~egr~ 84 (312)
T smart00787 71 SCKELKKYISEGRD 84 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666543
No 282
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.43 E-value=41 Score=43.09 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=13.6
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
+.+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55677899999998654
No 283
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.42 E-value=18 Score=30.64 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.3
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 566788899999876
No 284
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=33.17 E-value=20 Score=38.24 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=17.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..+..|.++ +-+|.+|+|||...
T Consensus 14 ~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 34444456655 45899999999665
No 285
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.11 E-value=20 Score=39.22 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=0.0
Q ss_pred hhhccCcceeEEeeccCCCCCcccc
Q 004310 196 TSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 196 ~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++-+||.--|+|.|.||-|||..|
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHH
No 286
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.11 E-value=18 Score=41.40 Aligned_cols=19 Identities=47% Similarity=0.515 Sum_probs=15.8
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
.-.|.-.|++|+|||+|+.
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999999984
No 287
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.10 E-value=1.6e+02 Score=26.57 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004310 502 HICRALQEKVKDLENQLAEERKTRIKQETRAFAATS 537 (762)
Q Consensus 502 ~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~~~~~~ 537 (762)
..+..+|+++++|+.+..+.....+-+-+|++.-++
T Consensus 15 ~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp 50 (83)
T PF14193_consen 15 EKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTP 50 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344567778888888888877777777666654433
No 288
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.77 E-value=6.9e+02 Score=28.85 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhcC------CCCccCCCCchhhhcccccC-CCceeeEEEecCCCCCChHhhHHHHHHHhH
Q 004310 384 SLSALGDVISALASK------SGHIPYRNSKLTHILQSSLG-GDCKTLMFVQISPSSSDLGETLCSLNFASR 448 (762)
Q Consensus 384 SLsaLg~VI~ALa~k------~~hIPYRdSKLT~LLqdsLg-GnskT~mI~~ISP~~~~~~ETLsTLrFAsr 448 (762)
+...||.||..+++. ..|.- | || -.-.|.+|++|=...---.-||.-|-.+++
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarLr--------l----F~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARLR--------L----FGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHHh--------H----hccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 567899999998752 11210 0 11 134577777775544444456666655543
No 289
>PRK08233 hypothetical protein; Provisional
Probab=32.66 E-value=18 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=12.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999765
No 290
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=32.65 E-value=19 Score=39.36 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=20.4
Q ss_pred cchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 191 TKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 191 ~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
...++..++.+. ..|.-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 345666666544 45666799999999876
No 291
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.48 E-value=3.9e+02 Score=24.31 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 004310 50 PILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPG 86 (762)
Q Consensus 50 ~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~ 86 (762)
-|......+..++..|+.++..|......+.-+.+..
T Consensus 9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~ 45 (100)
T PF01486_consen 9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLES 45 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 5677788888999999999998888877666655554
No 292
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=32.45 E-value=18 Score=42.64 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=63.8
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCcee
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMR 249 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~ 249 (762)
..+.||.+++.+..-..+.+.++.+ ...+.-|+-+|.+||||++.- ++++. ... +... .
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----A~~~~pvlI~GE~GtGK~~lA-----------~aiH~---~s~-r~~~-p 257 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----AMLDAPLLITGDTGTGKDLLA-----------YACHL---RSP-RGKK-P 257 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----hCCCCCEEEECCCCccHHHHH-----------HHHHH---hCC-CCCC-C
Confidence 4588999888765444455443322 235777999999999998654 33332 111 1111 1
Q ss_pred EEEEEEEEEEEccccc-cccccCCCC----CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 250 YELFVSMLEVYNEKIR-DLLVENSNQ----PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 250 ~~V~vS~lEIYNE~I~-DLL~~~s~~----~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
-+.+.|-.+..+.+- .|+...... ...+..+-+...+|++++.++-+....--..+.++|+.|.
T Consensus 258 -fv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 258 -FLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 326 (520)
T ss_pred -eEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 122333333322221 233211100 0001111223456888888888777666667777776653
No 293
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.40 E-value=19 Score=41.54 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=15.7
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356788999999999998
No 294
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=32.34 E-value=24 Score=43.67 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.7
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
.+.++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357899999999999886
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=32.29 E-value=25 Score=36.41 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=21.3
Q ss_pred chhhhhhccCc---ceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGY---NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGy---N~~IfAYGqTGSGKTyTM 220 (762)
-+-++.++.|- ..+++.+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 45567777543 567888899999998654
No 296
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=32.18 E-value=17 Score=45.67 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=17.1
Q ss_pred cceeEEeeccCCCCCccccC
Q 004310 202 YNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~ 221 (762)
.|+-.+..|+||||||++|-
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47777888999999999983
No 297
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.86 E-value=89 Score=24.92 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004310 90 LDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGN 127 (762)
Q Consensus 90 ~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGn 127 (762)
+..-..|...++.|+..|..-..+...|..+++.+++.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666666666666666654
No 298
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=31.79 E-value=47 Score=35.78 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.9
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
.-+.+|.-||+=|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999877
No 299
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=31.77 E-value=20 Score=39.02 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred cceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHH
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR 239 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~ 239 (762)
.-.++|.||..|+||+..+ .++..||.
T Consensus 75 ~~~~~~l~G~g~nGKStl~-----------~~l~~l~G 101 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQ-----------NLLSNLLG 101 (304)
T ss_pred ceEEEEEECCCCCcHHHHH-----------HHHHHHhC
Confidence 4567999999999998665 46666663
No 300
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.70 E-value=3.2e+02 Score=28.96 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 481 KETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 481 ~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
.+++.+..+++.++......+.....+++++.+|+.++..
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555555555544444
No 301
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=31.64 E-value=26 Score=42.76 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 179 ~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+...|..+..+ +....-.++..-++..|+||||||.+..
T Consensus 261 ~lt~~Q~~ai~~---I~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAE---ILADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHH---HHHhhhccCCceEEEECCCCCcHHHHHH
Confidence 466667776654 2233334555568999999999997653
No 302
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=31.61 E-value=18 Score=36.56 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999765
No 303
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=31.60 E-value=20 Score=42.50 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=25.5
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||.+++.+.. -. .+...++.+....|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~~----i~---~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG----IK---ALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH----HH---HHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 356666664422 22 2222334555667788999999999654
No 304
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=31.51 E-value=21 Score=44.55 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 187 VFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 187 Vf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
||..-..+++.+-++. .|+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 4444445666665544 4677999999999876
No 305
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=31.50 E-value=18 Score=36.35 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999887
No 306
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=31.49 E-value=3.9e+02 Score=28.23 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 481 KETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 481 ~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
..++.|...+.....+....+..+..|+..+..|+..|..+
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555543
No 307
>PRK06217 hypothetical protein; Validated
Probab=31.41 E-value=20 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999543
No 308
>CHL00181 cbbX CbbX; Provisional
Probab=31.41 E-value=19 Score=39.10 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 566999999999876
No 309
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=31.38 E-value=18 Score=44.38 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.2
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
|.-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677888999999999998
No 310
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=31.31 E-value=19 Score=39.05 Aligned_cols=15 Identities=40% Similarity=0.476 Sum_probs=13.2
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-+|++|+|||+.-
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 788999999999765
No 311
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.26 E-value=27 Score=39.85 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=20.2
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..|..++.|.++... .+||||||-+.
T Consensus 90 ~aiP~~L~g~dvIgl--AeTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGL--AETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEE--eccCCCchhhh
Confidence 456778899997555 49999999765
No 312
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.23 E-value=21 Score=44.12 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
.+|.-.|+||+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 478889999999999983
No 313
>PHA01747 putative ATP-dependent protease
Probab=31.14 E-value=26 Score=39.89 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=26.7
Q ss_pred cchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 191 TKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 191 ~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.-|+|++...+-|.-++=.|+.|+||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 568888777889999999999999999986
No 314
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.98 E-value=4.7e+02 Score=25.38 Aligned_cols=40 Identities=33% Similarity=0.551 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 482 ETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 482 e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
.+..|+..+..++.++...+.....++.+++.++..+..+
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433
No 315
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.94 E-value=3.2e+02 Score=24.91 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSE 113 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~ 113 (762)
.....+..++..++.+...+..++.......-...++......+.+++..+...+.+...+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555433322111234444555556666665555544443
No 316
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.92 E-value=3.6e+02 Score=23.43 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 471 QMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 471 ~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
.+..++...+.+++.|..+-...-.++...-..+..|++++..|..+|.+
T Consensus 16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555556666666666655544
No 317
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.82 E-value=3.4e+02 Score=27.55 Aligned_cols=14 Identities=43% Similarity=0.411 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhcC
Q 004310 385 LSALGDVISALASK 398 (762)
Q Consensus 385 LsaLg~VI~ALa~k 398 (762)
|.|+-.|=..|+.-
T Consensus 30 L~AFeEvg~~L~RT 43 (161)
T TIGR02894 30 LSAFEEVGRALNRT 43 (161)
T ss_pred HHHHHHHHHHHccc
Confidence 55555555555433
No 318
>PHA02244 ATPase-like protein
Probab=30.79 E-value=27 Score=39.70 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=14.6
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|.++ +-+|+||+|||+..
T Consensus 118 ~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred cCCCE--EEECCCCCCHHHHH
Confidence 45554 55899999999766
No 319
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=30.78 E-value=61 Score=36.65 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=38.5
Q ss_pred CeeeCCCCChhHHHhccchhhhhhccCcc---eeEEeeccCCCCCc---------------cccCCCCC--C-CCchhhh
Q 004310 175 DYVFKPEDNQEAVFAQTKPVVTSVLDGYN---VCIFAYGQTGTGKT---------------FTMEGTPE--N-RGVNYRT 233 (762)
Q Consensus 175 D~VF~~~~tQ~eVf~~~~plV~svldGyN---~~IfAYGqTGSGKT---------------yTM~G~~~--~-~GIipRa 233 (762)
|.+|+-+.+-+.+ ...+.++-.|+. -.+.-.|++|+||| ||+.|+|- + -+++|.-
T Consensus 61 ~~~~G~~~~i~~l----V~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~ 136 (358)
T PF08298_consen 61 DEFYGMEETIERL----VNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKE 136 (358)
T ss_pred ccccCcHHHHHHH----HHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHh
Confidence 4677754433322 224455555554 46888999999998 56666642 2 4778887
Q ss_pred HHHHHH
Q 004310 234 LEELFR 239 (762)
Q Consensus 234 l~~LF~ 239 (762)
+.+.|.
T Consensus 137 ~r~~~~ 142 (358)
T PF08298_consen 137 LRREFE 142 (358)
T ss_pred HHHHHH
Confidence 777763
No 320
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=30.72 E-value=22 Score=39.74 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=21.3
Q ss_pred chhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..++..++.+. ..|+-.|.||||||.+|
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 45566666644 67888999999999876
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=30.68 E-value=24 Score=39.53 Aligned_cols=18 Identities=50% Similarity=0.612 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 457888999999999998
No 322
>PTZ00110 helicase; Provisional
Probab=30.65 E-value=20 Score=42.40 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=19.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.|+ ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 34567899876 56679999999874
No 323
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.54 E-value=2.7e+02 Score=26.41 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 470 KQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 470 k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+.+.+.+.+.+..+..+-.++..++..+.+.-+....|+-+...|...|.+
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666666655555555543
No 324
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=30.42 E-value=25 Score=39.41 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=42.6
Q ss_pred eeeCCCCChhHHHhccch-hhhhhc-cCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHH-hhccCCceeEEE
Q 004310 176 YVFKPEDNQEAVFAQTKP-VVTSVL-DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRV-SKHRNGIMRYEL 252 (762)
Q Consensus 176 ~VF~~~~tQ~eVf~~~~p-lV~svl-dGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~-~~~~~~~~~~~V 252 (762)
+|=..+.++.+--....| +|+.++ .||. .|.||..|.|||+.+. ..+|.--+-.++|.. ..+ .+ -.+
T Consensus 62 ~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL----~l~IalaaG~~lfG~~v~e-pG---kvl 131 (402)
T COG3598 62 QVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL----YLCIALAAGKNLFGNKVKE-PG---KVL 131 (402)
T ss_pred EehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHH----HHHHHHHhhHHHhcccccC-CC---eEE
Confidence 554444444443333333 555444 4554 5889999999998774 234444444667752 222 11 134
Q ss_pred EEEEEEEEccccc
Q 004310 253 FVSMLEVYNEKIR 265 (762)
Q Consensus 253 ~vS~lEIYNE~I~ 265 (762)
+|| +|.|-|.+.
T Consensus 132 yvs-lEl~re~~L 143 (402)
T COG3598 132 YVS-LELYREDIL 143 (402)
T ss_pred EEE-eccChHHHH
Confidence 455 588866543
No 325
>PRK06696 uridine kinase; Validated
Probab=30.37 E-value=31 Score=35.74 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=16.9
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.+....|.-.|.+|||||+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 456667888899999999765
No 326
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=30.23 E-value=26 Score=39.64 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.4
Q ss_pred cCcceeEEeeccCCCCCccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyT 219 (762)
.|+.-+|++.|+.|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 69999999999999999963
No 327
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=30.22 E-value=26 Score=40.05 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=31.4
Q ss_pred ceeeecCeeeCCCCChhHHHhc-cchhhhhhcc--Cc--ceeEEeeccCCCCCcccc
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLD--GY--NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svld--Gy--N~~IfAYGqTGSGKTyTM 220 (762)
.+++.||.+.+.----..+.+. +..+....+. |. ---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 3457777776544443444443 3455555553 22 234677999999999863
No 328
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=30.16 E-value=23 Score=33.24 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34667899999999876
No 329
>PRK14531 adenylate kinase; Provisional
Probab=30.08 E-value=23 Score=35.48 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
-|+.+|..|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999965
No 330
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=30.02 E-value=22 Score=34.38 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999655
No 331
>PTZ00014 myosin-A; Provisional
Probab=29.82 E-value=28 Score=43.45 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=26.2
Q ss_pred HHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 186 AVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 186 eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
.||..+......++ .|.|-||+.-|.+|||||.+.
T Consensus 165 HifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 165 HVFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36765544444433 699999999999999999765
No 332
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=29.76 E-value=24 Score=34.66 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=12.8
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 333
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=29.61 E-value=18 Score=40.88 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=12.6
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
--++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34678899999999766
No 334
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=29.40 E-value=23 Score=43.71 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.0
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+..+++|.|+++. -+||||||...
T Consensus 43 ~ai~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 345677899997665 48999999864
No 335
>PRK13767 ATP-dependent helicase; Provisional
Probab=29.28 E-value=23 Score=44.57 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=18.3
Q ss_pred hhhhccCcceeEEeeccCCCCCcccc
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..+++|.|+.| ..+||||||...
T Consensus 41 i~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 445678998655 559999999864
No 336
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.18 E-value=2.6e+02 Score=31.10 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
++++..++.+...+..++...+.....+..++.+++.+.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444333
No 337
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.12 E-value=24 Score=34.61 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999865
No 338
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=29.00 E-value=22 Score=32.48 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.9
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|..+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999865
No 339
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.98 E-value=6.3e+02 Score=32.72 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=15.3
Q ss_pred CcceeEEeeccCCCCCccccC
Q 004310 201 GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~ 221 (762)
|-++. |.-|+.||||+-.|.
T Consensus 61 g~~vN-fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILT 80 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHH
Confidence 44444 888999999998774
No 340
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.85 E-value=24 Score=43.04 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=23.9
Q ss_pred eCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 178 FKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 178 F~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
+.....|.++++.+. ... ++ ..++.+|.||||||.+..
T Consensus 143 ~~Lt~~Q~~ai~~i~---~~~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAIR---AAA--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHHH---hcc--CC-CcEEEECCCCChHHHHHH
Confidence 344556766665431 111 33 448899999999997764
No 341
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=28.82 E-value=27 Score=42.91 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
+.++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46788999999999876
No 342
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=28.80 E-value=32 Score=35.32 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=21.3
Q ss_pred chhhhhhccCc---ceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGY---NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGy---N~~IfAYGqTGSGKTyTM 220 (762)
-+-++.++.|- ...+.-||.+|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45567777543 456789999999999765
No 343
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=28.72 E-value=26 Score=42.35 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=28.2
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
-.||.+++.+ .... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGqs----~~~~---~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK---ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHH---HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4677776533 2222 2344455677777888999999999776
No 344
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=28.63 E-value=23 Score=41.84 Aligned_cols=16 Identities=38% Similarity=0.735 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999999765
No 345
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=28.60 E-value=1.6e+02 Score=35.15 Aligned_cols=37 Identities=30% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004310 89 VLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELK 125 (762)
Q Consensus 89 ~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elk 125 (762)
-+-+|+.|.+.++.|...|..|..+|++++...++..
T Consensus 52 hevELElLrEDNEQl~tqYErEkalR~q~eqKfie~e 88 (832)
T KOG2077|consen 52 HEVELELLREDNEQLITQYEREKALRTQLEQKFIEGE 88 (832)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcchH
Confidence 3456888999999999999999999999998765543
No 346
>PRK14532 adenylate kinase; Provisional
Probab=28.59 E-value=26 Score=34.84 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
.|+..|..|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 488899999999965
No 347
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.51 E-value=1.5e+02 Score=28.52 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 004310 55 IACLSSEIENLKRDHTSLLHHVK 77 (762)
Q Consensus 55 ~~~l~~~i~~lk~e~~~l~~~~~ 77 (762)
|..+..++..++.++..|..+-+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~ 47 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERD 47 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 348
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=28.44 E-value=32 Score=35.05 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=20.1
Q ss_pred hhhhhhcc-Ccc--eeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLD-GYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svld-GyN--~~IfAYGqTGSGKTyTM 220 (762)
+-++.++. |+. ..+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 34566675 444 34789999999999765
No 349
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=47 Score=36.82 Aligned_cols=43 Identities=33% Similarity=0.560 Sum_probs=31.0
Q ss_pred eEEeeccCCCCCccccC--------------CC---CCCCCchhhhHHHHHHHhhccCCc
Q 004310 205 CIFAYGQTGTGKTFTME--------------GT---PENRGVNYRTLEELFRVSKHRNGI 247 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~--------------G~---~~~~GIipRal~~LF~~~~~~~~~ 247 (762)
.|+-||..|+|||..-- |+ ..-.|==|+.+++||+..++....
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apS 280 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS 280 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCc
Confidence 47899999999985432 21 112456699999999998876653
No 350
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=28.24 E-value=21 Score=32.15 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.8
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999654
No 351
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.20 E-value=3.6e+02 Score=26.84 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004310 471 QMAEKLKQDEKETKKLQDNLQSVQLRL--AAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 471 ~~~e~lk~~e~e~~~L~~~l~~lq~~l--~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
++.+.+.....+++.|+.++..+...+ .+....+..+++++..++.+|..
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555443 23344455555555555555544
No 352
>PRK06762 hypothetical protein; Provisional
Probab=28.11 E-value=26 Score=34.11 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.3
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
+|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 566789999999863
No 353
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.10 E-value=24 Score=40.78 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
...|+..|++|+|||+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457778999999999873
No 354
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=28.03 E-value=4.3e+02 Score=23.46 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=30.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004310 43 PVQGPALPILQKIACLSSEIENLKRDHTSLLHHVKSIS 80 (762)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~ 80 (762)
|...+...+..-|..|++++..|+.+|..|..+.+.+.
T Consensus 7 ~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d 44 (79)
T PF06657_consen 7 PSQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMD 44 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556888899999999999999999988777543
No 355
>PRK04040 adenylate kinase; Provisional
Probab=28.02 E-value=25 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999765
No 356
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=32 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=29.8
Q ss_pred eeEEeeccCCCCCccccCCCCCC-----------------CCchhhhHHHHHHHhhccCC
Q 004310 204 VCIFAYGQTGTGKTFTMEGTPEN-----------------RGVNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G~~~~-----------------~GIipRal~~LF~~~~~~~~ 246 (762)
-.|+.||+.|+|||.+-.--..+ -|=--+++.++|+...+...
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP 528 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAP 528 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC
Confidence 35999999999999765432111 24445888899987776554
No 357
>PRK01172 ski2-like helicase; Provisional
Probab=27.99 E-value=27 Score=42.38 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=16.9
Q ss_pred hhhccCcceeEEeeccCCCCCccc
Q 004310 196 TSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 196 ~svldGyN~~IfAYGqTGSGKTyT 219 (762)
..+.+|.| ++..++||||||..
T Consensus 32 ~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 32 EQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHhcCCc--EEEECCCCchHHHH
Confidence 34567777 57778999999975
No 358
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=27.93 E-value=18 Score=37.73 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.2
Q ss_pred eeccCCCCCcccc
Q 004310 208 AYGQTGTGKTFTM 220 (762)
Q Consensus 208 AYGqTGSGKTyTM 220 (762)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999887
No 359
>CHL00195 ycf46 Ycf46; Provisional
Probab=27.79 E-value=24 Score=41.45 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999765
No 360
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=27.69 E-value=27 Score=38.44 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=12.6
Q ss_pred eEEeeccCCCCCcc
Q 004310 205 CIFAYGQTGTGKTF 218 (762)
Q Consensus 205 ~IfAYGqTGSGKTy 218 (762)
.|+-.|+||||||-
T Consensus 6 ii~I~GpTasGKS~ 19 (300)
T PRK14729 6 IVFIFGPTAVGKSN 19 (300)
T ss_pred EEEEECCCccCHHH
Confidence 68889999999995
No 361
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.62 E-value=2.8e+02 Score=30.45 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004310 472 MAEKLKQDEKETKKLQDNLQSVQLRLAAR 500 (762)
Q Consensus 472 ~~e~lk~~e~e~~~L~~~l~~lq~~l~~~ 500 (762)
...-|.+.+--++-|+..|.+-+.+|..+
T Consensus 59 YLTPLQQKEV~iRHLkakLkes~~~l~dR 87 (305)
T PF15290_consen 59 YLTPLQQKEVCIRHLKAKLKESENRLHDR 87 (305)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444333
No 362
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=27.58 E-value=28 Score=42.04 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 179 ~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+...|..+..+ ++...-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~---I~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKE---ILQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHH---HHHHhccCCCccEEEECCCCCcHHHHH
Confidence 455557666654 222222233345789999999999765
No 363
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.56 E-value=2e+02 Score=34.40 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEE
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIR 129 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIR 129 (762)
|+..|..++.++..+|..+..|..++..+. .....|..+++.++..+-+|...|..+.|.+++|.--|.
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk----------~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLK----------AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 556666666666666666666666655432 334556666777777777888888888888888874443
No 364
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=27.45 E-value=25 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999754
No 365
>PRK00300 gmk guanylate kinase; Provisional
Probab=27.45 E-value=26 Score=35.22 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999999654
No 366
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=27.40 E-value=3.1e+02 Score=31.80 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSER---------------- 114 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~R---------------- 114 (762)
..-.|+.|+.+|..++.++..-..+..+ +. .+...+-....++++.|+++++.|...|
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~e-k~-----~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslem 324 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQE-KL-----MQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEM 324 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4455677788888888777765554442 10 1222333445778888888888876666
Q ss_pred --HHHHHHhhhcCCCEEEEEEeCC
Q 004310 115 --KQLYNEVIELKGNIRVFCRCRP 136 (762)
Q Consensus 115 --k~l~N~l~elkGnIRV~~RvRP 136 (762)
-+++|+..+-.|.+-|..---|
T Consensus 325 deery~Ne~~~~g~s~~Va~~asa 348 (552)
T KOG2129|consen 325 DEERYLNEFVDFGDSVEVALHASA 348 (552)
T ss_pred HHHHHHhhhhccCCceeeecccch
Confidence 3467777777777666654433
No 367
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.36 E-value=2.6e+02 Score=27.98 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCEEEEEE
Q 004310 57 CLSSEIENLKRDHTSLLHHVKSISTDS-FPG-PDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEV-IELKGNIRVFCR 133 (762)
Q Consensus 57 ~l~~~i~~lk~e~~~l~~~~~~~~~~~-~~~-~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l-~elkGnIRV~~R 133 (762)
....+.++|+.|+..|++|.+.++..+ |++ .-..+.++.+.+|++.+++........-....+.+ .-+.+-+.++++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLR 116 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666677777777777777543321 110 11455666777777777666665554444444433 234444555555
Q ss_pred eC
Q 004310 134 CR 135 (762)
Q Consensus 134 vR 135 (762)
+.
T Consensus 117 ~~ 118 (161)
T PF04420_consen 117 FW 118 (161)
T ss_dssp --
T ss_pred ee
Confidence 44
No 368
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.35 E-value=4.8e+02 Score=27.73 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=13.9
Q ss_pred ceeeEEEecCCCCCChHhhHHHHH
Q 004310 421 CKTLMFVQISPSSSDLGETLCSLN 444 (762)
Q Consensus 421 skT~mI~~ISP~~~~~~ETLsTLr 444 (762)
....|-+-|-+ ..+++.+..|.
T Consensus 94 ~~~~ltiRVP~--~~~~~~l~~l~ 115 (262)
T PF14257_consen 94 RSASLTIRVPA--DKFDSFLDELS 115 (262)
T ss_pred ceEEEEEEECH--HHHHHHHHHHh
Confidence 34444455544 57888888887
No 369
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.34 E-value=2.5e+02 Score=29.92 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004310 54 KIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIEL 124 (762)
Q Consensus 54 ~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~el 124 (762)
+|.+++.++..+..-...+.+++..+ .+.+..|.++..+.+.|..++..-..+=+.+|.++..|
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~-------e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESL-------ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTL 65 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 370
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=27.34 E-value=24 Score=42.15 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
...+--|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 345668999999999984
No 371
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=27.31 E-value=28 Score=36.92 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=11.3
Q ss_pred EeeccCCCCCcccc
Q 004310 207 FAYGQTGTGKTFTM 220 (762)
Q Consensus 207 fAYGqTGSGKTyTM 220 (762)
.-.|++|||||..+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 372
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=27.27 E-value=34 Score=42.96 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
+.++-+|+||+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999876
No 373
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.18 E-value=31 Score=37.67 Aligned_cols=40 Identities=30% Similarity=0.568 Sum_probs=25.5
Q ss_pred eEEeeccCCCCCccccCCCC--C---------------CCCchhhhHHHHHHHhhcc
Q 004310 205 CIFAYGQTGTGKTFTMEGTP--E---------------NRGVNYRTLEELFRVSKHR 244 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G~~--~---------------~~GIipRal~~LF~~~~~~ 244 (762)
.|+.||+.|+|||..--.-. . --|--.|.+++||.....+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 58999999999996542210 0 0133357777788766544
No 374
>CHL00176 ftsH cell division protein; Validated
Probab=27.14 E-value=25 Score=42.74 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=27.2
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhcc---------CcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLD---------GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svld---------GyN~~IfAYGqTGSGKTyTM 220 (762)
.+.||.|.+-+...+++ ..++..+-+ .....|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~~~~k~~l----~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGIEEAKEEF----EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccChHHHHHHH----HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 46777777654433333 223322211 11235899999999999876
No 375
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=27.06 E-value=64 Score=41.46 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=12.8
Q ss_pred eeEEeeccCCCCCccc
Q 004310 204 VCIFAYGQTGTGKTFT 219 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyT 219 (762)
+.+.-+|+||||||..
T Consensus 31 ~l~~I~G~tGaGKSti 46 (1047)
T PRK10246 31 GLFAITGPTGAGKTTL 46 (1047)
T ss_pred CEEEEECCCCCCHHHH
Confidence 4556789999999874
No 376
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.97 E-value=3.4e+02 Score=23.34 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 473 AEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDL 514 (762)
Q Consensus 473 ~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~L 514 (762)
.+++...+..+..+.+.+..++.+.+..+.....+.+++.++
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 377
>PRK14527 adenylate kinase; Provisional
Probab=26.87 E-value=15 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhhhHHHHH
Q 004310 204 VCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELF 238 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF 238 (762)
..|+.+|..|||||.....-.+..|+..-...+++
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~ 41 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDIL 41 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHH
Confidence 46899999999998754322222344443344444
No 378
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=26.87 E-value=31 Score=37.84 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=21.4
Q ss_pred cceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHH
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR 239 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~ 239 (762)
.-+||+..|..|||||.-| +|...+|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~----------QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM----------QRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHH----------HHHHHHHhh
Confidence 3579999999999999765 455555553
No 379
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.75 E-value=25 Score=39.19 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=23.6
Q ss_pred eCCCCChhHHHhc--cchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 178 FKPEDNQEAVFAQ--TKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 178 F~~~~tQ~eVf~~--~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+-|..+..-+|+. +..++..+.- +.-|+-+|.+|+|||...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 3344444444442 2334444433 445888999999999665
No 380
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=26.63 E-value=36 Score=34.71 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=21.0
Q ss_pred chhhhhhcc-Cc--ceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLD-GY--NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svld-Gy--N~~IfAYGqTGSGKTyTM 220 (762)
-+-++.++. |+ ...+.-+|.+|||||..+
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 355667775 33 446788999999999766
No 381
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=26.61 E-value=24 Score=37.65 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 179 ~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++++|....+.-..+-+. ......|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 3455555555432222222 334457888999999999876
No 382
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.60 E-value=3.5e+02 Score=24.59 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 474 EKLKQDEKETKKLQDNLQSVQLRLAA----------REHICRALQEKVKDLENQLAEERKTRI 526 (762)
Q Consensus 474 e~lk~~e~e~~~L~~~l~~lq~~l~~----------~e~~~~~l~e~~~~Le~ql~eer~~~~ 526 (762)
.++...++.+...+..++.+..+|.. .+.....+.+++...|++|..-|++.-
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 34455666777777777777766642 233445555566666666666555433
No 383
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=26.23 E-value=27 Score=43.48 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
-.+..|+||||||+.|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999998
No 384
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.12 E-value=4.1e+02 Score=28.55 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 485 KLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 485 ~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
.|.+++..+..+....+..+..+++++..++..+
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334333333333
No 385
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=26.12 E-value=28 Score=34.87 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=53.3
Q ss_pred cCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccc-cccccCCC----C
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIR-DLLVENSN----Q 274 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~-DLL~~~s~----~ 274 (762)
..++..|+-+|.+||||+..- +.|+........ . -|.|.|-.+..|.+- .|+..... .
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA--------------~~IH~~s~r~~~-p--fi~vnc~~~~~~~~e~~LFG~~~~~~~~~ 81 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA--------------RAIHNNSPRKNG-P--FISVNCAALPEELLESELFGHEKGAFTGA 81 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH--------------HHHHHCSTTTTS----EEEEETTTS-HHHHHHHHHEBCSSSSTTT
T ss_pred hCCCCCEEEEcCCCCcHHHHH--------------HHHHHhhhcccC-C--eEEEehhhhhcchhhhhhhcccccccccc
Confidence 467799999999999998443 344443322222 1 122222222223222 23322111 0
Q ss_pred CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhh
Q 004310 275 PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGAR 315 (762)
Q Consensus 275 ~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~ 315 (762)
.......-+..++|+.++.++.......-..+.++|+.+.-
T Consensus 82 ~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~ 122 (168)
T PF00158_consen 82 RSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKF 122 (168)
T ss_dssp SSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE
T ss_pred ccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchh
Confidence 11122333456779999999888888777888888877643
No 386
>PLN02200 adenylate kinase family protein
Probab=26.07 E-value=13 Score=39.10 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=22.4
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHH
Q 004310 204 VCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR 239 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~ 239 (762)
..|+..|..|||||+--..-....|+..-...+|++
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR 79 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLR 79 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHH
Confidence 468999999999996532222334555544555554
No 387
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=26.02 E-value=29 Score=42.30 Aligned_cols=121 Identities=13% Similarity=0.202 Sum_probs=58.3
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEE
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYE 251 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~ 251 (762)
+.|+.+++.+..-..+.+.+. . +...+..|+-+|.+|||||+.- ++++. .... .+.. -
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~----~-~a~~~~pVLI~GE~GTGK~~lA-----------~~ih~---~s~r-~~~~--~ 430 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVE----M-VAQSDSTVLILGETGTGKELIA-----------RAIHN---LSGR-NNRR--M 430 (686)
T ss_pred ccccceeecCHHHHHHHHHHH----H-HhCCCCCEEEECCCCcCHHHHH-----------HHHHH---hcCC-CCCC--e
Confidence 455556555443333333322 2 2356778999999999999643 22322 2211 1111 1
Q ss_pred EEEEEEEEEccccc-cccccCCCC----CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 252 LFVSMLEVYNEKIR-DLLVENSNQ----PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 252 V~vS~lEIYNE~I~-DLL~~~s~~----~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
+.+.|-.+..+.+- +|+...... .......-+..++|+.++.++-.....--..+..+|+.+.
T Consensus 431 v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~ 498 (686)
T PRK15429 431 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 498 (686)
T ss_pred EEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCC
Confidence 22333222221111 232211000 0011111133456888888877777666667777776654
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.94 E-value=28 Score=41.42 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
.+|.-.|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 445556999999999983
No 389
>PRK10867 signal recognition particle protein; Provisional
Probab=25.84 E-value=33 Score=39.74 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.8
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4567888999999999873
No 390
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.79 E-value=29 Score=35.83 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456799999999988
No 391
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=25.74 E-value=38 Score=34.79 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=19.5
Q ss_pred hhhhhcc-Cc--ceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLD-GY--NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svld-Gy--N~~IfAYGqTGSGKTyTM 220 (762)
-++.++. |+ ..++.-+|++|+|||+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3555553 43 457888999999999765
No 392
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.71 E-value=1.7e+02 Score=30.31 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004310 89 VLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVI 122 (762)
Q Consensus 89 ~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~ 122 (762)
....+..|.-+++.|..+|.+...+|..|+....
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999999999998754
No 393
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.55 E-value=4.8e+02 Score=30.35 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+.++++++.++..+..++.+-+.....+...+.+++..|..
T Consensus 65 ~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 65 EKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 33333444444444444433333334444444444444433
No 394
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=25.45 E-value=28 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999665
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=25.42 E-value=29 Score=35.53 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=15.0
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
+++-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 88899999999998763
No 396
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=25.35 E-value=34 Score=39.47 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=24.6
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.-++.+-+|...+-|..|.-||||||.+
T Consensus 39 ~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 39 RDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 3457777999999999999999999987
No 397
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.28 E-value=33 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
++.-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 5557899999999887
No 398
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=25.25 E-value=32 Score=40.46 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
-.|+-+|++|||||+.|-
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 357789999999999886
No 399
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=25.18 E-value=26 Score=36.06 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 400
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=25.15 E-value=40 Score=41.75 Aligned_cols=31 Identities=32% Similarity=0.318 Sum_probs=24.6
Q ss_pred cchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 191 TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 191 ~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
+..+++++-+|.+- ++---.||+|||||-+-
T Consensus 174 I~rv~Eaf~~g~~r-aLlvMATGTGKTrTAia 204 (875)
T COG4096 174 IRRVIEAFSKGQNR-ALLVMATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHhcCCce-EEEEEecCCCcceeHHH
Confidence 35678888899999 44456799999999864
No 401
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=25.12 E-value=36 Score=37.24 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=16.5
Q ss_pred cCc-ceeEEeeccCCCCCcccc
Q 004310 200 DGY-NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGy-N~~IfAYGqTGSGKTyTM 220 (762)
.|. .-+++-||+.|+|||.+.
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 443 446889999999999776
No 402
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.87 E-value=29 Score=39.17 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=11.5
Q ss_pred eeccCCCCCcccc
Q 004310 208 AYGQTGTGKTFTM 220 (762)
Q Consensus 208 AYGqTGSGKTyTM 220 (762)
-.|++|||||+++
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999887
No 403
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.83 E-value=32 Score=38.17 Aligned_cols=75 Identities=25% Similarity=0.438 Sum_probs=45.9
Q ss_pred eecCeeeCCCCChhHHHhcc-chh-hhhhccCcc---eeEEeeccCCCCCccccCC--CCCC---------------CCc
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPV-VTSVLDGYN---VCIFAYGQTGTGKTFTMEG--TPEN---------------RGV 229 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~pl-V~svldGyN---~~IfAYGqTGSGKTyTM~G--~~~~---------------~GI 229 (762)
-.++-|-+-+..-+.+-+.+ -|+ ...+|.|.- ..|+-||+.|+||+|.--. +..+ -|=
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 34455555444444444442 443 345565554 5799999999999995422 1110 255
Q ss_pred hhhhHHHHHHHhhccCC
Q 004310 230 NYRTLEELFRVSKHRNG 246 (762)
Q Consensus 230 ipRal~~LF~~~~~~~~ 246 (762)
--+.+..||....+...
T Consensus 210 SEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 56888999998877665
No 404
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=24.83 E-value=28 Score=36.88 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.4
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999765
No 405
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=24.78 E-value=31 Score=37.50 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 180 PEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 180 ~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
+...|.++-+.+ .+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 355566655443 334446654 5666799999998874
No 406
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=24.78 E-value=31 Score=37.50 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 180 PEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 180 ~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
+...|.++-+.+ .+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 355566655443 334446654 5666799999998874
No 407
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=24.77 E-value=5.2e+02 Score=25.13 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKT 524 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~ 524 (762)
+-|-.+|+..+..++-+....+.....|...++.||..|..+|..
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888888888888889999999998888776653
No 408
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=24.77 E-value=32 Score=35.28 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.1
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
+.++.-.|++|||||..|.
T Consensus 28 ~~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 28 NGLFLICGPTGAGKSTILD 46 (213)
T ss_pred cCEEEEECCCCCCHHHHHH
Confidence 3456678999999998773
No 409
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=24.75 E-value=1.4e+02 Score=22.70 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 486 LQDNLQSVQLRLAAREHICRALQEKVKDLE 515 (762)
Q Consensus 486 L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le 515 (762)
|+.++..+|..+++=++.+..|+++-++|.
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~ 31 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELS 31 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 556677777777777777777777766554
No 410
>PRK14530 adenylate kinase; Provisional
Probab=24.73 E-value=30 Score=35.43 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
-|+-.|.+|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999999654
No 411
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.72 E-value=29 Score=36.79 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
-++..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999765
No 412
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.65 E-value=5.4e+02 Score=27.85 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=5.6
Q ss_pred hHHHHHHHhHhh
Q 004310 439 TLCSLNFASRVR 450 (762)
Q Consensus 439 TLsTLrFAsrak 450 (762)
+++++-++-...
T Consensus 25 ~~~~~l~~~~~a 36 (247)
T COG3879 25 SLAMLLAGVMLA 36 (247)
T ss_pred HHHHHHHHHHHH
Confidence 445554444443
No 413
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=24.56 E-value=31 Score=33.48 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.2
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998644
No 414
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=24.52 E-value=32 Score=39.53 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-+|+||+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46889999999999765
No 415
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.43 E-value=37 Score=37.99 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
.-+++-||+.|+|||++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 446789999999999866
No 416
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.42 E-value=3.4e+02 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 50 PILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVS 111 (762)
Q Consensus 50 ~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~ 111 (762)
.+...+..|..+|..+-.++..|+.++.++ ...-..|.-|++.|++.+.+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l----------~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQEL----------LEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888888888777743 2334445555555555544433
No 417
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=24.35 E-value=35 Score=41.38 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.-++++|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 45789999999999976
No 418
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=24.35 E-value=30 Score=43.27 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.1
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
|.-++..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445677899999999998
No 419
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.28 E-value=7.6e+02 Score=29.76 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=7.4
Q ss_pred EEEEEeccCccc
Q 004310 353 HLWLVDLAGSER 364 (762)
Q Consensus 353 kL~LVDLAGSER 364 (762)
.++.||=.|.=+
T Consensus 91 qfcYv~~~g~V~ 102 (546)
T PF07888_consen 91 QFCYVDQKGEVR 102 (546)
T ss_pred EEEEECCCccEE
Confidence 456677776643
No 420
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.27 E-value=27 Score=41.10 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=25.6
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||.|.+ |+.+.+.....+.. +.....++-||+.|+|||.+.
T Consensus 12 ~~~dvvG----q~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVVG----QEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhcC----hHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 4555554 56665544333332 122334689999999999776
No 421
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=24.23 E-value=33 Score=42.18 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45889999999999775
No 422
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=24.13 E-value=32 Score=39.64 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 46899999999999765
No 423
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=24.10 E-value=32 Score=37.79 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.5
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
++..|+||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999764
No 424
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=36 Score=39.49 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=11.9
Q ss_pred EEeeccCCCCCccc
Q 004310 206 IFAYGQTGTGKTFT 219 (762)
Q Consensus 206 IfAYGqTGSGKTyT 219 (762)
|+..|+||||||+.
T Consensus 229 vLllGPtGsGKTll 242 (564)
T KOG0745|consen 229 VLLLGPTGSGKTLL 242 (564)
T ss_pred EEEECCCCCchhHH
Confidence 57789999999964
No 425
>PRK03839 putative kinase; Provisional
Probab=24.00 E-value=32 Score=34.02 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=12.1
Q ss_pred EEeeccCCCCCccc
Q 004310 206 IFAYGQTGTGKTFT 219 (762)
Q Consensus 206 IfAYGqTGSGKTyT 219 (762)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999864
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.94 E-value=35 Score=39.51 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=17.2
Q ss_pred CcceeEEeeccCCCCCccccC
Q 004310 201 GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~ 221 (762)
|....|+-.|.+|+|||+|..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 334678999999999999973
No 427
>PRK06851 hypothetical protein; Provisional
Probab=23.90 E-value=50 Score=37.48 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=23.0
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+.+++++|-+-.++-.|..|+|||++|
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 3455666777888999999999999988
No 428
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=23.90 E-value=34 Score=34.96 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhhhHHHHHH
Q 004310 206 IFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR 239 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~ 239 (762)
|+.+|..|||||+.-.--.+..|+..-.+.+|++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHH
Confidence 6789999999986432112234555555555554
No 429
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=23.82 E-value=30 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=19.1
Q ss_pred CCCeEEeCCceEEEecChHHHHHHHHH
Q 004310 286 EGGTQEVPGLTEAQVYGTEEVWELLKS 312 (762)
Q Consensus 286 ~~g~~~V~gLte~~V~S~ee~~~lL~~ 312 (762)
.+|++++.++....-..-..+.++|..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHH
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHh
Confidence 458888888877777666777777765
No 430
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=23.81 E-value=32 Score=43.77 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.3
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
..|..++.|.+.+ +..|..|+||||+|-
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 4677788887765 488999999999874
No 431
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=23.76 E-value=44 Score=34.94 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=18.5
Q ss_pred hhhhhhcc-Cc--ceeEEeeccCCCCCcc
Q 004310 193 PVVTSVLD-GY--NVCIFAYGQTGTGKTF 218 (762)
Q Consensus 193 plV~svld-Gy--N~~IfAYGqTGSGKTy 218 (762)
+-++.++. |+ ..+++-+|.+|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 34555554 43 4678899999999985
No 432
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.71 E-value=37 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.9
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
-..|+..|.+|||||.|..
T Consensus 99 p~vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCG 117 (428)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4578888999999999873
No 433
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.69 E-value=4.1e+02 Score=24.23 Aligned_cols=44 Identities=30% Similarity=0.485 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 484 KKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQET 530 (762)
Q Consensus 484 ~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~ 530 (762)
.+|+.++...+.++...++..+.|+.+.+.|+. .+|+.+-.-.+
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k---~eRK~RtHRLi 47 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK---KERKERTHRLI 47 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345555555556666666666666666666655 23444444333
No 434
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=23.67 E-value=33 Score=41.44 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.4
Q ss_pred ceeEEeeccCCCCCccccCC
Q 004310 203 NVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~G 222 (762)
.+.++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34578889999999999964
No 435
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=23.66 E-value=29 Score=43.08 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.1
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
.+-.+.+|+||||||.++
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345788999999999887
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=23.63 E-value=31 Score=33.10 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=11.5
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|.-.|++|||||.-+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999543
No 437
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.57 E-value=5e+02 Score=28.38 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 478 QDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIK 527 (762)
Q Consensus 478 ~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~ 527 (762)
..+..+++.+.+++..+.+|...+...=+..++.+.||.+|++.....++
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~ 243 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677778888888888888877777778888888888776665554
No 438
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.57 E-value=34 Score=33.58 Aligned_cols=15 Identities=47% Similarity=0.605 Sum_probs=12.5
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
+.-.|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999876
No 439
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.56 E-value=3.7e+02 Score=28.70 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 004310 57 CLSSEIENLKRDHTSLLHHVK 77 (762)
Q Consensus 57 ~l~~~i~~lk~e~~~l~~~~~ 77 (762)
+|+.+++.+..+...|..+..
T Consensus 139 e~kekl~E~~~EkeeL~~ele 159 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELE 159 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444334444443333
No 440
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.40 E-value=36 Score=35.84 Aligned_cols=28 Identities=25% Similarity=0.212 Sum_probs=20.6
Q ss_pred hhhhhhcc--CcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLD--GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svld--GyN~~IfAYGqTGSGKTyTM 220 (762)
.+++.+.+ .-...|.-||..|+|||...
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 34444444 66778999999999999654
No 441
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=23.35 E-value=8.3e+02 Score=27.46 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=4.8
Q ss_pred CCCCcccccccc
Q 004310 577 SPRPPQKKNTMR 588 (762)
Q Consensus 577 ~~~~~~~~~~~~ 588 (762)
+|.++-...|.+
T Consensus 252 SP~R~~npL~TS 263 (323)
T PF08537_consen 252 SPRRPVNPLFTS 263 (323)
T ss_pred CCCcCCCCCccc
Confidence 444443333433
No 442
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=23.33 E-value=31 Score=35.15 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=13.3
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|.-.|.+|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34667899999999654
No 443
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=23.27 E-value=35 Score=34.03 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.+|+-.|.+|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 46899999999999765
No 444
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=36 Score=37.06 Aligned_cols=12 Identities=58% Similarity=1.113 Sum_probs=0.0
Q ss_pred EEeeccCCCCCc
Q 004310 206 IFAYGQTGTGKT 217 (762)
Q Consensus 206 IfAYGqTGSGKT 217 (762)
++.||+.|+|||
T Consensus 208 vLmYGPPGTGKT 219 (424)
T KOG0652|consen 208 VLMYGPPGTGKT 219 (424)
T ss_pred eEeeCCCCCcHH
No 445
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=23.13 E-value=34 Score=38.41 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=12.8
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
+.-.|++|||||.++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 446
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.05 E-value=6.4e+02 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRAL 507 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l 507 (762)
.++...|.+++.+++.++.+.++.++.+
T Consensus 148 ~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 148 QKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333333
No 447
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.05 E-value=6.1e+02 Score=29.53 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 470 KQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 470 k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
..+...++..+.++..+..++......+...+..+..+...+..|+.|.
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666665555
No 448
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.97 E-value=7.7e+02 Score=27.47 Aligned_cols=48 Identities=27% Similarity=0.289 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 474 EKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 474 e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
++++....++...+..++.++.++...+..++...++..+++.++++.
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555544444444444444444444443
No 449
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=22.93 E-value=41 Score=39.89 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=67.2
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCce
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIM 248 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~ 248 (762)
...|+||.+.+....=.++-+.+ .-..+.+++|+-+|.||+||- ++-++++.+ .. +...
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~a-----kr~A~tdstVLi~GESGTGKE-----------lfA~~IH~~---S~-R~~~- 297 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELA-----KRIAKTDSTVLILGESGTGKE-----------LFARAIHNL---SP-RANG- 297 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHH-----HhhcCCCCcEEEecCCCccHH-----------HHHHHHHhc---Cc-ccCC-
Confidence 34689999988664332222221 235788999999999999993 111222211 11 1111
Q ss_pred eEEEEEEEEEEEcccccc-cc-----cc--C---CCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcc
Q 004310 249 RYELFVSMLEVYNEKIRD-LL-----VE--N---SNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVR 317 (762)
Q Consensus 249 ~~~V~vS~lEIYNE~I~D-LL-----~~--~---s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R 317 (762)
-|+.|-+--|=+ || .- + ......+--.-+.+++|+.++..+.+.+..=-.-++++|+...-.
T Consensus 298 ------PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~- 370 (560)
T COG3829 298 ------PFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIE- 370 (560)
T ss_pred ------CeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEE-
Confidence 122232222221 11 00 0 011111223345567788888888888877777788888766433
Q ss_pred cccccC
Q 004310 318 SVGSTN 323 (762)
Q Consensus 318 ~~~sT~ 323 (762)
.+++|.
T Consensus 371 rvG~t~ 376 (560)
T COG3829 371 RVGGTK 376 (560)
T ss_pred ecCCCC
Confidence 344444
No 450
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=22.93 E-value=32 Score=36.38 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=24.6
Q ss_pred eeEEeeccCCCCCccccC------CC-----CCCCCchhhhHHHHHHHhh
Q 004310 204 VCIFAYGQTGTGKTFTME------GT-----PENRGVNYRTLEELFRVSK 242 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~------G~-----~~~~GIipRal~~LF~~~~ 242 (762)
-+-..+|++|+|||.|+- |- .-..++-..++..||.-+.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~ 82 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLA 82 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHh
Confidence 344569999999999984 32 1234666666666665443
No 451
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=3.3e+02 Score=26.31 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 483 TKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLA 519 (762)
Q Consensus 483 ~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ 519 (762)
+.+|.+..+.+..++...+.+.+.+++++++|...|.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544443
No 452
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=22.90 E-value=89 Score=35.51 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.0
Q ss_pred ccCCCeEEeCCceEEEecChHHHHHHHHHHh
Q 004310 284 AAEGGTQEVPGLTEAQVYGTEEVWELLKSGA 314 (762)
Q Consensus 284 ~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~ 314 (762)
...+|+.++.++......--..+.++|+.+.
T Consensus 231 ~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~ 261 (445)
T TIGR02915 231 YAHGGTLFLDEIGDLPLNLQAKLLRFLQERV 261 (445)
T ss_pred ECCCCEEEEechhhCCHHHHHHHHHHHhhCe
Confidence 4556888888888877766677777777664
No 453
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.86 E-value=37 Score=41.14 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=25.8
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCc-ceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGY-NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGy-N~~IfAYGqTGSGKTyTM 220 (762)
+||.|.+ |+.+......+ +-.|. .-.++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~---l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNA---LTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777765 55555432222 22332 245788999999999876
No 454
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.74 E-value=5.9e+02 Score=25.03 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 466 LFKYKQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 466 ~~~~k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
.+.+..+...-...+..+......++.++..+...+...+.-.+.+..|++....
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~ 73 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKA 73 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444333
No 455
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.58 E-value=4e+02 Score=23.99 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 004310 55 IACLSSEIENLKRDHTSLLHHVKSIS 80 (762)
Q Consensus 55 ~~~l~~~i~~lk~e~~~l~~~~~~~~ 80 (762)
+..|..+|+..=+.+..|..++++++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 456
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.57 E-value=2.6e+02 Score=30.97 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004310 49 LPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELK 125 (762)
Q Consensus 49 ~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elk 125 (762)
++.+.++..+..++..++.....+...-.++.... ..+...-+.+..+..++.++...-...|..+-+++++++
T Consensus 2 ~~~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~---~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 2 LAMLDKLDELELKRKQLKEEIEELKEKRDELRKEA---SELAEKRDELNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766666555444333221 112333456677777788888888888999999999987
No 457
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.56 E-value=3.8e+02 Score=25.49 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 004310 49 LPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYV 108 (762)
Q Consensus 49 ~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 108 (762)
..+..++..|..+|..+-.++..|++++.++ ...-..|.-|++.|++.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el----------~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAEL----------LEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888887743 2334445555555554444
No 458
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=22.48 E-value=34 Score=40.98 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3688999999999543
No 459
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.42 E-value=3.5e+02 Score=27.00 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQ 116 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~ 116 (762)
.++..+..++..++.++.....+++++....-...++...+..|..+++..+..|..+....+.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554422222446777888888888777777777655554
No 460
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=22.34 E-value=32 Score=42.21 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=28.5
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccC-CceeEEEEEEEEEE-Ecccccccc
Q 004310 206 IFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRN-GIMRYELFVSMLEV-YNEKIRDLL 268 (762)
Q Consensus 206 IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEI-YNE~I~DLL 268 (762)
++..|.||||||.+|. +|.+.+..+. ...-|.....|++- |++.. |.+
T Consensus 188 ~li~GttGSGKS~~i~--------------~LL~~ir~RGdrAIIyD~~GeFv~~FY~p~~-DiI 237 (732)
T PRK13700 188 FCLHGTVGAGKSEVIR--------------RLANYARQRGDMVVIYDRSGEFVKSYYDPSI-DKI 237 (732)
T ss_pred eEEeCCCCCCHHHHHH--------------HHHHHHHHcCCeEEEEeCCCchHHHhcCCcc-cee
Confidence 5778999999998763 3443333332 22345566777754 55543 543
No 461
>PLN02796 D-glycerate 3-kinase
Probab=22.24 E-value=23 Score=39.76 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=12.3
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|---|.+|||||+.+
T Consensus 103 IGI~G~sGSGKSTLa 117 (347)
T PLN02796 103 IGISAPQGCGKTTLV 117 (347)
T ss_pred EEEECCCCCcHHHHH
Confidence 455699999999876
No 462
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.20 E-value=1.5e+02 Score=34.51 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCCCCC----ccHHHHHHHHHHHHHHHHHHHHHH
Q 004310 51 ILQKIACLSS-EIENLKRDHTSLLHHVKSISTDSFPG----PDVLDTLRLLSNEHELLKKKYVDV 110 (762)
Q Consensus 51 ~~~~~~~l~~-~i~~lk~e~~~l~~~~~~~~~~~~~~----~~~~~~l~~l~~~~~~l~~~~~~e 110 (762)
+-+.+..+.. +|++.|..+..+..++++++.+..-. .-+++.+.++..+.+.+..++.++
T Consensus 337 ~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 337 YEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555655 99999999999999998766553211 113444555555555444444443
No 463
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=22.14 E-value=44 Score=40.29 Aligned_cols=46 Identities=17% Similarity=0.412 Sum_probs=25.2
Q ss_pred eee-cCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCc
Q 004310 171 QFK-FDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKT 217 (762)
Q Consensus 171 ~F~-FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKT 217 (762)
.|. |+.+|+-+..-+.+.+-....+.. ++.-...++-.|++|+|||
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~g-l~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQG-LEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHh-cCCCCceEEEecCCCCCch
Confidence 343 566776443333333211111111 2445567888999999999
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=22.11 E-value=37 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.8
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
++-.+..|+||||||+.|
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 556789999999999988
No 465
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.08 E-value=9.6e+02 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004310 482 ETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRAFAA 535 (762)
Q Consensus 482 e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~~~~ 535 (762)
+..+|+.+...+..++...-.....+++.+-.---.+..++|.+|.+..+.+++
T Consensus 152 enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 152 ENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444443333333333333333344455566666555555444
No 466
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.05 E-value=3.6e+02 Score=27.31 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004310 506 ALQEKVKDLENQLAE 520 (762)
Q Consensus 506 ~l~e~~~~Le~ql~e 520 (762)
.+.+++++++++|.+
T Consensus 158 ~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 158 KLSEEIEKLKKELEK 172 (192)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455555555544
No 467
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=21.99 E-value=39 Score=34.70 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=18.6
Q ss_pred hhhhhcc-C--cceeEEeeccCCCCCccc
Q 004310 194 VVTSVLD-G--YNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svld-G--yN~~IfAYGqTGSGKTyT 219 (762)
-++.++. | .+..++.+|.+|||||.-
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 3455563 3 356789999999999843
No 468
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=21.98 E-value=34 Score=36.31 Aligned_cols=15 Identities=47% Similarity=0.565 Sum_probs=11.4
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
+.-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 466899999999764
No 469
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.94 E-value=39 Score=41.42 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.1
Q ss_pred CcceeEEeeccCCCCCccccC
Q 004310 201 GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~ 221 (762)
-....|+-||+.|+||||-..
T Consensus 699 r~~~giLLyGppGcGKT~la~ 719 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLAS 719 (952)
T ss_pred ccccceEEECCCCCcHHHHHH
Confidence 345569999999999999763
No 470
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=21.81 E-value=1.2e+03 Score=26.85 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=7.5
Q ss_pred CCCCchhhhcc
Q 004310 404 YRNSKLTHILQ 414 (762)
Q Consensus 404 YRdSKLT~LLq 414 (762)
+|||-+-|.|.
T Consensus 241 WRDSii~R~Ld 251 (442)
T PF06637_consen 241 WRDSIIPRSLD 251 (442)
T ss_pred HHHHHHhhhhh
Confidence 67777777663
No 471
>PRK00279 adk adenylate kinase; Reviewed
Probab=21.80 E-value=39 Score=34.60 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
.|+.+|..|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999964
No 472
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=21.78 E-value=39 Score=33.45 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=20.8
Q ss_pred hhhhhcc-CcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLD-GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svld-GyN~~IfAYGqTGSGKTyTM 220 (762)
++..+.. .....|+..|..|||||.-+
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHH
Confidence 4555554 77888999999999999543
No 473
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=21.78 E-value=38 Score=39.24 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.-|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35888999999999765
No 474
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=21.73 E-value=40 Score=32.61 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.8
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34567777999999999765
No 475
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=41 Score=39.37 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=25.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchh-hhHHHHH
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNY-RTLEELF 238 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIip-Ral~~LF 238 (762)
+.-.+..|.| ++.||+.|||||.... .-+||+| ....++.
T Consensus 191 leiAAAGgHn--Ll~~GpPGtGKTmla~---Rl~~lLPpls~~E~l 231 (490)
T COG0606 191 LEIAAAGGHN--LLLVGPPGTGKTMLAS---RLPGLLPPLSIPEAL 231 (490)
T ss_pred HHHHHhcCCc--EEEecCCCCchHHhhh---hhcccCCCCChHHHH
Confidence 4445556666 6889999999997763 2356664 3334443
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=21.56 E-value=44 Score=33.97 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=14.2
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|.-.|.+|||||+..
T Consensus 6 ~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345777899999999765
No 477
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=21.56 E-value=40 Score=36.15 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
+|+..|..|||||+-
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 678899999999865
No 478
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.54 E-value=7.7e+02 Score=24.15 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 468 KYKQMAEKLKQDEKETKKLQDNLQSVQL---------------RLAAREHICRALQEKVKDLENQLAEERKTRIKQETRA 532 (762)
Q Consensus 468 ~~k~~~e~lk~~e~e~~~L~~~l~~lq~---------------~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~ 532 (762)
.|....+...+.++++..|++.+..+.. ........++.|+..-..|++|+.. ..-+++||.++
T Consensus 9 RYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~-~e~rLeQEsKA 87 (129)
T PF15372_consen 9 RYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKD-YEWRLEQESKA 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3555566666677777777766554332 1123344555666666666666644 34567777777
Q ss_pred HHhcc
Q 004310 533 FAATS 537 (762)
Q Consensus 533 ~~~~~ 537 (762)
|..+.
T Consensus 88 yhk~n 92 (129)
T PF15372_consen 88 YHKAN 92 (129)
T ss_pred HHHHh
Confidence 77666
No 479
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=21.50 E-value=39 Score=38.01 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
-++++|..|||||+++.
T Consensus 3 ~~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIA 19 (396)
T ss_pred eEEEeCCCCcccHHHHH
Confidence 36899999999999885
No 480
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=21.40 E-value=42 Score=37.18 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-+|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999664
No 481
>PRK09039 hypothetical protein; Validated
Probab=21.35 E-value=7e+02 Score=28.04 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 482 ETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 482 e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
++..|+.+++.++.+++..+..+...+++.++.+.+++.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444444444444444433
No 482
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=21.34 E-value=37 Score=28.55 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.7
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998655
No 483
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=21.31 E-value=34 Score=42.76 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.8
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
|-++-.+..|+||||||+.|
T Consensus 454 ~d~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 454 DDVGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 33556899999999999988
No 484
>PRK04182 cytidylate kinase; Provisional
Probab=21.30 E-value=41 Score=32.67 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|.+|||||...
T Consensus 2 ~I~i~G~~GsGKstia 17 (180)
T PRK04182 2 IITISGPPGSGKTTVA 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999654
No 485
>PLN02678 seryl-tRNA synthetase
Probab=21.27 E-value=3.8e+02 Score=31.39 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSE 113 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~ 113 (762)
+-....+|..++..|+.+.+.+..++..+....-...++...++.|.+++..|..++.+...+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666665322111011123333445555555555555444333
No 486
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=21.26 E-value=38 Score=42.33 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=14.6
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
|..++..|+||||||..+
T Consensus 17 ~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 446778899999999765
No 487
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=21.22 E-value=34 Score=31.04 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.2
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999655
No 488
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=21.18 E-value=40 Score=43.85 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=18.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.+..++.|.+.+ +.++||||||+.
T Consensus 86 ~i~~il~G~d~v--i~ApTGsGKT~f 109 (1171)
T TIGR01054 86 WAKRVLRGDSFA--IIAPTGVGKTTF 109 (1171)
T ss_pred HHHHHhCCCeEE--EECCCCCCHHHH
Confidence 456788999765 567999999964
No 489
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.16 E-value=9.8e+02 Score=25.18 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 488 DNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 488 ~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+++..++............+++++..|+.+|.+
T Consensus 155 ~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 155 NNLKSLEASEEKASEREDEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334455555555555544
No 490
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.14 E-value=52 Score=34.76 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.4
Q ss_pred ceeEEeeccCCCCCcc
Q 004310 203 NVCIFAYGQTGTGKTF 218 (762)
Q Consensus 203 N~~IfAYGqTGSGKTy 218 (762)
...++-||..|||||.
T Consensus 23 g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 23 GSVVLITGPPGTGKTI 38 (260)
T ss_pred CcEEEEEcCCCCcHHH
Confidence 4567889999999984
No 491
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.12 E-value=46 Score=37.03 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.5
Q ss_pred cCc-ceeEEeeccCCCCCcccc
Q 004310 200 DGY-NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGy-N~~IfAYGqTGSGKTyTM 220 (762)
.|. ...++-||+.|+|||++.
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 453 347778999999999876
No 492
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=21.11 E-value=36 Score=42.57 Aligned_cols=18 Identities=39% Similarity=0.659 Sum_probs=16.1
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
|.-++..|+||||||+.|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 667788999999999988
No 493
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=21.10 E-value=42 Score=37.08 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
.|+..|+||||||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999843
No 494
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=21.04 E-value=41 Score=41.36 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-||++|+|||+..
T Consensus 489 giLL~GppGtGKT~la 504 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLA 504 (733)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999765
No 495
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=21.04 E-value=50 Score=41.46 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=25.6
Q ss_pred CeeeCCCCChhHHHhccchhhhhhccCc------ceeEEeeccCCCCCcccc
Q 004310 175 DYVFKPEDNQEAVFAQTKPVVTSVLDGY------NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 175 D~VF~~~~tQ~eVf~~~~plV~svldGy------N~~IfAYGqTGSGKTyTM 220 (762)
.+|++ |...-+.+...|..+..|. .+.++-+|++|+|||++.
T Consensus 565 ~~v~G----Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 565 ERVVG----QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred cccCC----ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 44665 3344444334444444442 356778899999999876
No 496
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=21.01 E-value=32 Score=38.50 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=22.6
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++-.+++..-+-++-.|.+|+|||..+
T Consensus 15 al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 15 ALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred HHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 4566677766677889999999999876
No 497
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.00 E-value=2.5e+02 Score=31.83 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHH
Q 004310 46 GPALPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELL 103 (762)
Q Consensus 46 ~~~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 103 (762)
+..-....|+..|+.++..|+.|+.......+....+.....++...+..|..++..|
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 3445688999999999999999999887766643222222223444455555444444
No 498
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.96 E-value=6.4e+02 Score=28.53 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 463 ISELFKYKQMAEKLK----QDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIK 527 (762)
Q Consensus 463 ~~~~~~~k~~~e~lk----~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~ 527 (762)
.+.+........+.+ +.|..+..++++.+.++.+|.+....|.+.+++...|-.+|+|+..-+.+
T Consensus 112 ~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 112 KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
No 499
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=20.96 E-value=53 Score=35.71 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=0.0
Q ss_pred hhhhccCc---ceeEEeeccCCCCCc
Q 004310 195 VTSVLDGY---NVCIFAYGQTGTGKT 217 (762)
Q Consensus 195 V~svldGy---N~~IfAYGqTGSGKT 217 (762)
++.+|.|- ...+.-||.+|||||
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT 109 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKT 109 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHH
No 500
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.96 E-value=5.2e+02 Score=26.02 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 004310 31 EDSVSNGRQEFSPVQGPALPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDV 110 (762)
Q Consensus 31 e~~~~~~~~e~s~~~~~~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e 110 (762)
||.+-.-.-++...+...-.+..+|..|...++.++..+..+.+... +=.....+.+....++|.+...+.
T Consensus 57 eNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~N---------pf~s~~~qes~~~veel~eqV~el 127 (157)
T COG3352 57 ENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFN---------PFMSKTPQESRGIVEELEEQVNEL 127 (157)
T ss_pred HhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcCCC
Q 004310 111 SSERKQLYNEVIELKGN 127 (762)
Q Consensus 111 ~~~Rk~l~N~l~elkGn 127 (762)
...--..-+.+.++.|+
T Consensus 128 ~~i~emv~~d~~~l~g~ 144 (157)
T COG3352 128 KMIVEMVIKDLRELYGV 144 (157)
T ss_pred HHHHHHHhccchhhcCC
Done!