Query 004310
Match_columns 762
No_of_seqs 455 out of 2265
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 9.3E-96 3E-100 809.1 35.9 386 53-457 3-402 (403)
2 3u06_A Protein claret segregat 100.0 7.2E-94 2.5E-98 794.9 34.3 378 62-461 5-391 (412)
3 3cob_A Kinesin heavy chain-lik 100.0 2.1E-92 7.2E-97 773.4 30.2 337 122-462 1-337 (369)
4 2rep_A Kinesin-like protein KI 100.0 5.6E-91 1.9E-95 763.8 27.4 338 114-452 10-376 (376)
5 2h58_A Kinesin-like protein KI 100.0 4.2E-90 1.4E-94 746.1 30.8 326 123-453 1-329 (330)
6 3t0q_A AGR253WP; kinesin, alph 100.0 3.3E-90 1.1E-94 752.1 30.1 333 122-456 1-348 (349)
7 2vvg_A Kinesin-2; motor protei 100.0 5.2E-90 1.8E-94 750.1 28.8 330 125-461 3-344 (350)
8 2y65_A Kinesin, kinesin heavy 100.0 4.7E-90 1.6E-94 754.2 25.8 330 123-462 8-343 (365)
9 1f9v_A Kinesin-like protein KA 100.0 2.4E-89 8.1E-94 744.7 28.9 330 124-457 1-346 (347)
10 3bfn_A Kinesin-like protein KI 100.0 1.8E-89 6.2E-94 753.2 26.0 335 120-461 15-356 (388)
11 1goj_A Kinesin, kinesin heavy 100.0 7.5E-89 2.6E-93 742.6 30.2 330 124-461 4-339 (355)
12 3lre_A Kinesin-like protein KI 100.0 3.6E-89 1.2E-93 745.3 27.6 328 117-452 1-355 (355)
13 2owm_A Nckin3-434, related to 100.0 5.4E-89 1.8E-93 762.1 28.0 339 120-462 32-423 (443)
14 3b6u_A Kinesin-like protein KI 100.0 6.6E-89 2.3E-93 746.0 26.1 338 119-462 14-363 (372)
15 1x88_A Kinesin-like protein KI 100.0 4E-89 1.4E-93 746.0 24.2 335 122-460 4-358 (359)
16 1bg2_A Kinesin; motor protein, 100.0 3.4E-89 1.2E-93 737.5 23.4 318 123-452 4-325 (325)
17 1t5c_A CENP-E protein, centrom 100.0 4.3E-88 1.5E-92 735.1 30.0 328 125-462 3-338 (349)
18 1v8k_A Kinesin-like protein KI 100.0 3.5E-88 1.2E-92 747.1 23.8 347 97-457 43-407 (410)
19 2wbe_C Bipolar kinesin KRP-130 100.0 1.4E-88 4.9E-93 744.7 20.2 334 121-461 18-370 (373)
20 2zfi_A Kinesin-like protein KI 100.0 7.5E-88 2.6E-92 737.6 25.6 328 125-459 3-361 (366)
21 2heh_A KIF2C protein; kinesin, 100.0 6.5E-88 2.2E-92 740.7 22.6 345 97-455 23-385 (387)
22 4a14_A Kinesin, kinesin-like p 100.0 1.1E-86 3.9E-91 723.3 27.3 317 125-450 10-344 (344)
23 3nwn_A Kinesin-like protein KI 100.0 3.9E-87 1.3E-91 729.7 22.1 321 122-452 20-359 (359)
24 3gbj_A KIF13B protein; kinesin 100.0 6.1E-86 2.1E-90 719.7 26.2 320 126-451 1-349 (354)
25 1ry6_A Internal kinesin; kines 100.0 9.9E-86 3.4E-90 718.9 25.0 327 127-464 1-343 (360)
26 2nr8_A Kinesin-like protein KI 100.0 1E-85 3.4E-90 718.4 22.8 324 119-452 16-358 (358)
27 3dc4_A Kinesin-like protein NO 100.0 1E-83 3.5E-88 699.2 24.1 313 123-457 19-340 (344)
28 4h1g_A Maltose binding protein 100.0 1.3E-80 4.3E-85 733.1 31.2 336 115-453 363-712 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 2.5E-35 8.6E-40 307.3 9.1 280 105-455 3-292 (298)
30 3kin_B Kinesin heavy chain; mo 99.9 2.4E-27 8.2E-32 220.4 10.5 81 382-462 1-82 (117)
31 2kin_B Kinesin; motor protein, 99.9 5.8E-28 2E-32 218.2 5.2 84 378-461 1-85 (100)
32 4etp_B Spindle POLE BODY-assoc 98.4 4.2E-06 1.4E-10 88.7 15.5 272 96-433 29-309 (333)
33 3ec2_A DNA replication protein 94.8 0.0049 1.7E-07 59.2 -0.1 51 170-220 5-55 (180)
34 2w58_A DNAI, primosome compone 93.3 0.018 6.1E-07 56.1 0.5 51 170-220 20-71 (202)
35 2qgz_A Helicase loader, putati 91.2 0.044 1.5E-06 58.0 0.4 51 171-221 120-170 (308)
36 4b4t_K 26S protease regulatory 91.2 1.2 4.2E-05 49.4 12.0 75 172-246 169-266 (428)
37 4b4t_M 26S protease regulatory 88.5 0.95 3.2E-05 50.5 8.3 125 121-246 118-275 (434)
38 4gkp_A Spindle POLE BODY-assoc 88.3 1.5 5.2E-05 45.9 9.2 264 117-455 4-272 (275)
39 2bjv_A PSP operon transcriptio 85.3 0.18 6.2E-06 51.1 0.3 45 171-220 2-46 (265)
40 2kjq_A DNAA-related protein; s 84.8 0.5 1.7E-05 44.5 3.1 42 170-220 12-53 (149)
41 3bos_A Putative DNA replicatio 83.6 0.3 1E-05 47.6 1.1 45 172-220 25-69 (242)
42 1l8q_A Chromosomal replication 82.7 0.4 1.4E-05 50.1 1.7 48 171-220 7-54 (324)
43 4b4t_J 26S protease regulatory 81.4 6.2 0.00021 43.6 10.5 75 172-246 145-242 (405)
44 4b4t_L 26S protease subunit RP 81.2 3.6 0.00012 45.9 8.6 49 172-220 178-232 (437)
45 2v1u_A Cell division control p 81.0 0.53 1.8E-05 49.5 1.8 47 174-220 14-61 (387)
46 1jbk_A CLPB protein; beta barr 79.9 0.48 1.6E-05 44.0 0.9 27 194-220 34-60 (195)
47 1d2n_A N-ethylmaleimide-sensit 79.7 0.42 1.4E-05 48.7 0.4 47 174-220 32-81 (272)
48 2r62_A Cell division protease 79.2 0.54 1.9E-05 47.5 1.1 51 170-220 6-61 (268)
49 3h4m_A Proteasome-activating n 77.9 0.53 1.8E-05 47.9 0.6 50 171-220 13-68 (285)
50 2z4s_A Chromosomal replication 77.4 0.69 2.3E-05 51.3 1.3 49 169-220 99-147 (440)
51 1g8p_A Magnesium-chelatase 38 77.3 0.71 2.4E-05 48.2 1.3 44 170-220 19-62 (350)
52 3t15_A Ribulose bisphosphate c 77.2 0.78 2.7E-05 47.8 1.6 17 204-220 37-53 (293)
53 2p65_A Hypothetical protein PF 76.5 0.53 1.8E-05 43.8 0.1 27 194-220 34-60 (187)
54 1vec_A ATP-dependent RNA helic 75.2 0.87 3E-05 43.8 1.3 25 194-220 33-57 (206)
55 1qde_A EIF4A, translation init 74.8 0.81 2.8E-05 44.7 0.9 24 194-219 44-67 (224)
56 3uk6_A RUVB-like 2; hexameric 74.6 0.86 2.9E-05 48.1 1.1 46 171-220 40-87 (368)
57 1ixz_A ATP-dependent metallopr 74.6 0.59 2E-05 47.0 -0.2 51 170-220 11-66 (254)
58 2gxq_A Heat resistant RNA depe 73.4 0.91 3.1E-05 43.6 0.8 25 194-220 31-55 (207)
59 1fnn_A CDC6P, cell division co 72.9 1 3.4E-05 47.5 1.1 38 183-220 21-61 (389)
60 2qby_A CDC6 homolog 1, cell di 72.4 1.3 4.5E-05 46.3 1.8 37 184-220 25-62 (386)
61 2c9o_A RUVB-like 1; hexameric 71.0 1.2 4.1E-05 49.3 1.3 46 171-220 33-80 (456)
62 3dkp_A Probable ATP-dependent 70.8 1.1 3.8E-05 44.5 0.8 25 194-220 59-83 (245)
63 3te6_A Regulatory protein SIR3 70.7 0.75 2.6E-05 49.2 -0.5 27 194-220 35-62 (318)
64 3syl_A Protein CBBX; photosynt 70.6 1.3 4.6E-05 45.4 1.4 20 201-220 65-84 (309)
65 3bor_A Human initiation factor 69.8 0.74 2.5E-05 45.9 -0.7 25 194-220 60-84 (237)
66 2qz4_A Paraplegin; AAA+, SPG7, 69.3 1.5 5.2E-05 43.6 1.5 19 202-220 38-56 (262)
67 2pl3_A Probable ATP-dependent 68.5 1.4 4.8E-05 43.5 0.9 25 194-220 55-79 (236)
68 3iuy_A Probable ATP-dependent 67.8 1.4 4.7E-05 43.3 0.8 25 194-220 50-74 (228)
69 2chg_A Replication factor C sm 67.6 1.5 5E-05 41.7 0.9 20 201-220 36-55 (226)
70 1t6n_A Probable ATP-dependent 67.4 1.4 4.8E-05 42.9 0.7 25 194-220 44-68 (220)
71 1iy2_A ATP-dependent metallopr 66.8 1.1 3.6E-05 46.0 -0.3 51 170-220 35-90 (278)
72 4b4t_I 26S protease regulatory 66.7 15 0.00051 41.0 8.8 43 204-246 217-276 (437)
73 3b9p_A CG5977-PA, isoform A; A 66.6 1.2 4.1E-05 45.7 -0.0 50 171-220 17-71 (297)
74 3ly5_A ATP-dependent RNA helic 66.4 1.2 4.1E-05 45.4 -0.0 25 194-220 84-108 (262)
75 3fmo_B ATP-dependent RNA helic 65.7 1.8 6.1E-05 45.2 1.1 27 194-220 122-148 (300)
76 1p9r_A General secretion pathw 65.5 1.8 6E-05 48.0 1.1 27 194-220 158-184 (418)
77 3b6e_A Interferon-induced heli 65.1 0.87 3E-05 43.8 -1.3 24 195-220 42-65 (216)
78 1wrb_A DJVLGB; RNA helicase, D 65.1 1.7 6E-05 43.4 0.9 25 194-220 53-77 (253)
79 3pvs_A Replication-associated 64.5 2.1 7.2E-05 47.6 1.5 38 183-220 30-67 (447)
80 1sxj_C Activator 1 40 kDa subu 64.4 1.8 6.2E-05 45.5 0.9 41 173-220 23-63 (340)
81 3cf0_A Transitional endoplasmi 63.7 1.3 4.6E-05 46.0 -0.3 50 171-220 11-66 (301)
82 1lv7_A FTSH; alpha/beta domain 63.2 2.2 7.4E-05 42.9 1.2 50 171-220 8-62 (257)
83 2qby_B CDC6 homolog 3, cell di 63.2 1.6 5.5E-05 46.0 0.2 37 184-220 25-62 (384)
84 3jvv_A Twitching mobility prot 63.2 1.9 6.3E-05 46.7 0.7 27 194-220 114-140 (356)
85 3eiq_A Eukaryotic initiation f 63.1 2.2 7.5E-05 45.2 1.3 26 193-220 69-94 (414)
86 3fe2_A Probable ATP-dependent 62.8 1.8 6.2E-05 43.1 0.5 25 194-220 59-83 (242)
87 3llm_A ATP-dependent RNA helic 62.7 1.8 6.2E-05 43.1 0.5 26 193-220 68-93 (235)
88 3hnw_A Uncharacterized protein 62.6 75 0.0026 29.8 11.5 41 478-518 86-126 (138)
89 2oxc_A Probable ATP-dependent 62.4 2.1 7.2E-05 42.3 0.9 25 194-220 54-78 (230)
90 3ber_A Probable ATP-dependent 61.9 2.1 7.3E-05 43.1 0.8 25 194-220 73-97 (249)
91 3co5_A Putative two-component 61.6 2.2 7.6E-05 39.2 0.8 19 203-221 27-45 (143)
92 3pfi_A Holliday junction ATP-d 61.4 2.2 7.6E-05 44.5 0.9 44 173-220 27-72 (338)
93 3hnw_A Uncharacterized protein 61.4 44 0.0015 31.4 9.7 55 475-529 76-130 (138)
94 1hqc_A RUVB; extended AAA-ATPa 60.8 3 0.0001 42.9 1.8 45 172-220 9-55 (324)
95 1sxj_D Activator 1 41 kDa subu 59.5 2.7 9.1E-05 43.8 1.1 23 198-220 53-75 (353)
96 3vfd_A Spastin; ATPase, microt 58.6 2 6.8E-05 46.3 -0.1 51 170-220 110-165 (389)
97 1w5s_A Origin recognition comp 58.6 2.7 9.3E-05 44.6 1.0 29 192-220 35-69 (412)
98 3nmd_A CGMP dependent protein 58.5 29 0.001 29.2 7.0 41 471-511 23-63 (72)
99 1q0u_A Bstdead; DEAD protein, 58.5 1.5 5.2E-05 42.8 -0.9 25 194-220 34-58 (219)
100 3fmp_B ATP-dependent RNA helic 58.3 2.9 9.8E-05 46.0 1.1 26 194-219 122-147 (479)
101 2jlq_A Serine protease subunit 57.9 4.3 0.00015 44.8 2.5 27 193-220 10-36 (451)
102 2eyu_A Twitching motility prot 57.7 3.3 0.00011 42.6 1.4 18 203-220 25-42 (261)
103 2j0s_A ATP-dependent RNA helic 57.6 2.6 8.9E-05 44.8 0.6 25 194-220 67-91 (410)
104 3fht_A ATP-dependent RNA helic 57.5 2.9 9.8E-05 44.2 0.9 27 194-220 55-81 (412)
105 2chq_A Replication factor C sm 56.7 3 0.0001 42.6 0.9 41 173-220 15-55 (319)
106 3pey_A ATP-dependent RNA helic 56.5 2.9 0.0001 43.7 0.8 27 194-220 35-61 (395)
107 1njg_A DNA polymerase III subu 55.9 3.4 0.00012 39.5 1.1 17 204-220 46-62 (250)
108 4fcw_A Chaperone protein CLPB; 55.8 3.3 0.00011 42.4 1.0 17 204-220 48-64 (311)
109 1sxj_E Activator 1 40 kDa subu 55.3 3.3 0.00011 43.3 0.9 42 173-220 12-53 (354)
110 3n70_A Transport activator; si 55.2 3.3 0.00011 38.1 0.8 20 201-220 22-41 (145)
111 3a7p_A Autophagy protein 16; c 54.9 85 0.0029 30.0 10.4 43 476-518 91-133 (152)
112 2fz4_A DNA repair protein RAD2 54.5 3.5 0.00012 41.4 0.9 25 195-221 102-126 (237)
113 1xwi_A SKD1 protein; VPS4B, AA 54.5 2.5 8.7E-05 44.5 -0.1 49 172-220 9-62 (322)
114 1iqp_A RFCS; clamp loader, ext 54.3 4.2 0.00014 41.6 1.5 41 173-220 23-63 (327)
115 1s2m_A Putative ATP-dependent 53.4 3.1 0.00011 44.0 0.3 25 194-220 51-75 (400)
116 2z0m_A 337AA long hypothetical 53.3 3.4 0.00012 42.2 0.6 25 194-220 24-48 (337)
117 3fho_A ATP-dependent RNA helic 53.2 4.5 0.00015 45.2 1.6 27 194-220 149-175 (508)
118 1ofh_A ATP-dependent HSL prote 53.2 3.1 0.00011 42.3 0.3 18 203-220 50-67 (310)
119 3u61_B DNA polymerase accessor 52.9 4.2 0.00014 42.1 1.3 41 173-220 24-65 (324)
120 1tue_A Replication protein E1; 52.7 2.8 9.6E-05 42.4 -0.1 27 195-221 48-76 (212)
121 2ewv_A Twitching motility prot 52.7 4 0.00014 44.1 1.1 26 195-220 128-153 (372)
122 1gvn_B Zeta; postsegregational 52.6 5.9 0.0002 41.1 2.3 36 185-220 10-50 (287)
123 2i4i_A ATP-dependent RNA helic 52.4 3.6 0.00012 43.6 0.7 25 194-220 45-69 (417)
124 3d8b_A Fidgetin-like protein 1 51.2 4.3 0.00015 43.3 1.0 20 201-220 115-134 (357)
125 3oiy_A Reverse gyrase helicase 49.2 4.3 0.00015 43.5 0.6 24 194-219 29-52 (414)
126 1d7m_A Cortexillin I; coiled-c 49.1 1.2E+02 0.0041 26.6 9.4 49 484-532 28-76 (101)
127 1u0j_A DNA replication protein 49.0 5 0.00017 41.9 1.1 29 192-220 90-121 (267)
128 3eie_A Vacuolar protein sortin 48.6 4.2 0.00014 42.5 0.4 49 172-220 15-68 (322)
129 3h1t_A Type I site-specific re 48.5 4.1 0.00014 46.2 0.4 21 200-221 196-216 (590)
130 1rif_A DAR protein, DNA helica 48.3 3 0.0001 42.5 -0.7 25 195-221 122-146 (282)
131 1xti_A Probable ATP-dependent 48.1 4.9 0.00017 42.1 0.8 25 194-220 38-62 (391)
132 2oap_1 GSPE-2, type II secreti 48.1 4.5 0.00015 45.9 0.6 19 200-220 259-277 (511)
133 1jr3_A DNA polymerase III subu 47.6 6.1 0.00021 41.3 1.5 35 184-220 21-55 (373)
134 2db3_A ATP-dependent RNA helic 46.6 5 0.00017 43.8 0.6 25 194-220 86-110 (434)
135 1ojl_A Transcriptional regulat 46.2 6.1 0.00021 41.3 1.2 20 201-220 23-42 (304)
136 2k48_A Nucleoprotein; viral pr 46.0 1.4E+02 0.0049 26.7 9.7 27 496-522 76-102 (107)
137 2v4h_A NF-kappa-B essential mo 45.6 74 0.0025 28.8 8.0 69 51-126 29-97 (110)
138 3nmd_A CGMP dependent protein 45.5 85 0.0029 26.4 7.8 21 500-520 31-51 (72)
139 3i5x_A ATP-dependent RNA helic 45.1 6.2 0.00021 44.2 1.1 26 194-219 102-127 (563)
140 2fxo_A Myosin heavy chain, car 45.0 1.8E+02 0.0063 26.5 11.5 36 485-520 52-87 (129)
141 2v1x_A ATP-dependent DNA helic 44.8 7.5 0.00026 44.7 1.8 25 194-220 52-76 (591)
142 3jsv_C NF-kappa-B essential mo 44.7 27 0.00091 30.9 4.8 37 90-126 39-75 (94)
143 3oja_B Anopheles plasmodium-re 44.1 1.3E+02 0.0045 33.7 12.0 18 426-443 391-408 (597)
144 4a2p_A RIG-I, retinoic acid in 43.6 6.4 0.00022 43.4 0.9 25 194-220 15-39 (556)
145 2dhr_A FTSH; AAA+ protein, hex 42.9 5.5 0.00019 45.1 0.2 51 170-220 26-81 (499)
146 3na7_A HP0958; flagellar bioge 42.9 2.5E+02 0.0086 28.4 12.8 37 483-519 34-70 (256)
147 2zan_A Vacuolar protein sortin 42.8 4.8 0.00016 44.5 -0.3 17 204-220 168-184 (444)
148 1in4_A RUVB, holliday junction 42.7 5.6 0.00019 41.9 0.3 44 173-220 23-68 (334)
149 1fuu_A Yeast initiation factor 42.3 3.6 0.00012 43.1 -1.3 25 194-220 51-75 (394)
150 4b3f_X DNA-binding protein smu 41.7 6.1 0.00021 45.7 0.4 26 195-221 198-223 (646)
151 1ic2_A Tropomyosin alpha chain 41.7 1.3E+02 0.0045 25.3 8.7 36 485-520 24-59 (81)
152 4gp7_A Metallophosphoesterase; 41.6 6.4 0.00022 37.2 0.4 17 205-221 11-27 (171)
153 3tbk_A RIG-I helicase domain; 41.3 7.3 0.00025 42.7 0.9 25 194-220 12-36 (555)
154 1qvr_A CLPB protein; coiled co 41.2 5.6 0.00019 47.7 -0.0 42 173-221 168-209 (854)
155 3lw7_A Adenylate kinase relate 40.6 7.4 0.00025 35.4 0.7 16 205-220 3-18 (179)
156 1n0w_A DNA repair protein RAD5 40.5 8.1 0.00028 37.7 1.0 29 192-220 10-41 (243)
157 2qp9_X Vacuolar protein sortin 40.1 6.7 0.00023 41.9 0.4 50 171-220 47-101 (355)
158 4b4t_H 26S protease regulatory 40.1 11 0.00039 42.2 2.2 75 172-246 206-303 (467)
159 3swk_A Vimentin; cytoskeleton, 40.1 50 0.0017 28.5 5.8 54 56-126 3-56 (86)
160 1hv8_A Putative ATP-dependent 40.1 6.6 0.00023 40.5 0.3 26 194-220 36-61 (367)
161 2x8a_A Nuclear valosin-contain 39.8 6.7 0.00023 40.4 0.3 15 206-220 47-61 (274)
162 3pxi_A Negative regulator of g 39.8 9.4 0.00032 44.9 1.6 37 184-220 496-538 (758)
163 2fwr_A DNA repair protein RAD2 39.8 7.8 0.00027 42.3 0.9 25 194-220 101-125 (472)
164 1um8_A ATP-dependent CLP prote 39.7 7.2 0.00025 41.5 0.6 18 203-220 72-89 (376)
165 1wt6_A Myotonin-protein kinase 39.7 1.8E+02 0.0062 25.0 9.2 40 481-520 31-70 (81)
166 1w36_D RECD, exodeoxyribonucle 39.5 7.1 0.00024 45.0 0.5 19 203-221 164-182 (608)
167 2w0m_A SSO2452; RECA, SSPF, un 39.2 9.6 0.00033 36.6 1.3 28 193-220 10-40 (235)
168 4ag6_A VIRB4 ATPase, type IV s 39.0 7.2 0.00025 41.9 0.4 17 204-220 36-52 (392)
169 4gl2_A Interferon-induced heli 38.5 7.7 0.00026 44.6 0.6 25 194-220 15-39 (699)
170 1sxj_B Activator 1 37 kDa subu 38.4 8 0.00027 39.4 0.6 21 200-220 39-59 (323)
171 1c4o_A DNA nucleotide excision 38.3 12 0.00041 43.6 2.1 46 172-222 2-47 (664)
172 2dfs_A Myosin-5A; myosin-V, in 38.1 1.4E+02 0.0048 36.9 11.6 9 294-302 745-753 (1080)
173 3b85_A Phosphate starvation-in 38.0 9.1 0.00031 37.9 0.9 25 194-220 15-39 (208)
174 1e9r_A Conjugal transfer prote 37.9 7.4 0.00025 42.3 0.3 19 202-220 52-70 (437)
175 3ol1_A Vimentin; structural ge 37.9 1E+02 0.0035 28.0 8.0 31 48-78 15-45 (119)
176 1sxj_A Activator 1 95 kDa subu 37.9 6.2 0.00021 44.3 -0.3 17 204-220 78-94 (516)
177 1yks_A Genome polyprotein [con 37.9 11 0.00039 41.3 1.8 21 198-220 5-25 (440)
178 3hws_A ATP-dependent CLP prote 37.9 8 0.00027 41.0 0.6 18 203-220 51-68 (363)
179 1m1j_C Fibrinogen gamma chain; 37.9 3E+02 0.01 30.2 13.1 27 372-398 27-53 (409)
180 2r44_A Uncharacterized protein 37.8 4.9 0.00017 41.8 -1.1 17 204-220 47-63 (331)
181 2qag_C Septin-7; cell cycle, c 37.5 8.8 0.0003 42.4 0.8 24 197-220 25-48 (418)
182 3tr0_A Guanylate kinase, GMP k 37.3 8.2 0.00028 36.8 0.4 16 205-220 9-24 (205)
183 3upu_A ATP-dependent DNA helic 37.2 8.1 0.00028 42.6 0.5 36 181-220 27-62 (459)
184 1lwu_C Fibrinogen gamma chain; 37.2 73 0.0025 34.0 7.8 9 736-744 285-293 (323)
185 3e70_C DPA, signal recognition 37.0 15 0.0005 39.2 2.4 18 203-220 129-146 (328)
186 4etp_A Kinesin-like protein KA 37.0 82 0.0028 34.5 8.5 36 487-522 9-44 (403)
187 1wp9_A ATP-dependent RNA helic 37.0 9.2 0.00031 40.6 0.8 25 194-221 17-41 (494)
188 3cve_A Homer protein homolog 1 36.9 1.2E+02 0.0042 25.5 7.5 30 473-502 6-35 (72)
189 4emc_A Monopolin complex subun 36.6 1.1E+02 0.0037 30.3 8.2 47 474-520 13-59 (190)
190 1r6b_X CLPA protein; AAA+, N-t 36.5 11 0.00038 44.1 1.5 17 204-220 489-505 (758)
191 3sqw_A ATP-dependent RNA helic 36.3 10 0.00035 42.9 1.1 26 194-219 51-76 (579)
192 3cvf_A Homer-3, homer protein 36.1 62 0.0021 27.7 5.7 27 475-501 14-40 (79)
193 3a7p_A Autophagy protein 16; c 36.0 3E+02 0.01 26.3 12.4 63 475-537 69-133 (152)
194 2cvh_A DNA repair and recombin 35.9 11 0.00036 36.2 1.0 28 193-220 7-37 (220)
195 3o0z_A RHO-associated protein 35.7 2.3E+02 0.0079 27.5 10.3 41 469-509 15-55 (168)
196 2ykg_A Probable ATP-dependent 35.7 9.7 0.00033 43.7 0.8 25 194-220 21-45 (696)
197 1qvr_A CLPB protein; coiled co 35.3 11 0.00039 44.9 1.4 37 184-220 563-605 (854)
198 2efr_A General control protein 35.3 2.5E+02 0.0085 26.9 10.4 48 477-524 73-120 (155)
199 3lfu_A DNA helicase II; SF1 he 35.1 12 0.00041 42.6 1.5 19 203-221 22-40 (647)
200 2ic6_A Nucleocapsid protein; h 35.1 2.1E+02 0.0072 24.4 8.7 27 496-522 46-72 (78)
201 3tau_A Guanylate kinase, GMP k 34.8 11 0.00037 36.8 0.9 16 205-220 10-25 (208)
202 3cve_A Homer protein homolog 1 34.6 2E+02 0.0067 24.2 8.4 38 495-532 7-46 (72)
203 3i00_A HIP-I, huntingtin-inter 34.5 1.8E+02 0.006 26.7 8.9 25 53-77 15-39 (120)
204 2qnr_A Septin-2, protein NEDD5 34.4 9.4 0.00032 39.9 0.4 24 197-220 12-35 (301)
205 2px0_A Flagellar biosynthesis 34.3 12 0.00041 39.1 1.2 17 204-220 106-122 (296)
206 1ly1_A Polynucleotide kinase; 34.3 10 0.00036 35.0 0.7 17 204-220 3-19 (181)
207 3pxg_A Negative regulator of g 34.0 16 0.00054 40.5 2.2 42 173-221 178-219 (468)
208 1kgd_A CASK, peripheral plasma 34.0 9.8 0.00033 36.1 0.4 16 205-220 7-22 (180)
209 1zp6_A Hypothetical protein AT 33.9 9.8 0.00034 35.8 0.4 17 204-220 10-26 (191)
210 2r8r_A Sensor protein; KDPD, P 33.5 9.6 0.00033 38.8 0.3 18 204-221 7-24 (228)
211 3a00_A Guanylate kinase, GMP k 33.4 10 0.00035 36.1 0.4 15 206-220 4-18 (186)
212 1lkx_A Myosin IE heavy chain; 33.4 11 0.00038 44.4 0.8 35 186-220 76-111 (697)
213 3oja_B Anopheles plasmodium-re 33.4 1.7E+02 0.0057 32.8 10.6 36 488-523 523-558 (597)
214 3sjb_C Golgi to ER traffic pro 33.4 1.6E+02 0.0054 26.0 7.9 59 58-116 21-81 (93)
215 3trf_A Shikimate kinase, SK; a 33.3 11 0.00038 35.3 0.7 16 205-220 7-22 (185)
216 2eqb_B RAB guanine nucleotide 33.3 2.6E+02 0.0088 24.8 11.3 38 481-518 26-63 (97)
217 2dr3_A UPF0273 protein PH0284; 33.2 13 0.00043 36.3 1.1 28 193-220 10-40 (247)
218 4fi5_A Nucleoprotein; structur 33.1 1.7E+02 0.0057 26.7 8.2 26 496-521 63-88 (113)
219 3mq9_A Bone marrow stromal ant 32.9 2.8E+02 0.0097 30.1 12.1 52 482-534 405-456 (471)
220 3hu3_A Transitional endoplasmi 32.6 11 0.00037 42.4 0.5 19 202-220 237-255 (489)
221 2yhs_A FTSY, cell division pro 32.5 14 0.00049 41.8 1.5 16 205-220 295-310 (503)
222 3iij_A Coilin-interacting nucl 32.2 12 0.00039 35.2 0.6 17 204-220 12-28 (180)
223 1rj9_A FTSY, signal recognitio 32.1 12 0.00041 39.3 0.8 17 204-220 103-119 (304)
224 3sop_A Neuronal-specific septi 32.0 11 0.00038 38.8 0.5 19 202-220 1-19 (270)
225 1qhx_A CPT, protein (chloramph 31.8 12 0.00042 34.7 0.7 17 204-220 4-20 (178)
226 2v26_A Myosin VI; calmodulin-b 31.8 12 0.00042 44.6 0.8 35 186-220 122-157 (784)
227 2p5t_B PEZT; postsegregational 31.8 18 0.00062 36.3 2.0 17 204-220 33-49 (253)
228 1w9i_A Myosin II heavy chain; 31.8 12 0.00042 44.5 0.8 21 200-220 169-189 (770)
229 1lvg_A Guanylate kinase, GMP k 31.7 11 0.00037 36.6 0.3 16 205-220 6-21 (198)
230 3b9q_A Chloroplast SRP recepto 31.6 11 0.00039 39.5 0.4 17 204-220 101-117 (302)
231 2ce7_A Cell division protein F 31.5 13 0.00044 41.8 0.9 47 170-220 11-66 (476)
232 2j41_A Guanylate kinase; GMP, 31.4 12 0.0004 35.7 0.5 16 205-220 8-23 (207)
233 2v6i_A RNA helicase; membrane, 31.4 16 0.00056 39.8 1.7 16 205-220 4-19 (431)
234 2gk6_A Regulator of nonsense t 31.3 12 0.00041 43.2 0.6 17 205-221 197-213 (624)
235 3lnc_A Guanylate kinase, GMP k 31.3 14 0.00049 36.2 1.1 16 205-220 29-44 (231)
236 1ye8_A Protein THEP1, hypothet 31.2 12 0.0004 36.1 0.4 15 206-220 3-17 (178)
237 1ypw_A Transitional endoplasmi 30.9 16 0.00053 43.7 1.5 51 170-220 199-255 (806)
238 3efg_A Protein SLYX homolog; x 30.9 1.3E+02 0.0045 25.4 6.9 43 475-517 15-57 (78)
239 4a4z_A Antiviral helicase SKI2 30.9 15 0.0005 45.0 1.3 24 194-219 47-70 (997)
240 1g8x_A Myosin II heavy chain f 30.7 13 0.00044 45.7 0.8 22 199-220 168-189 (1010)
241 3u1c_A Tropomyosin alpha-1 cha 30.6 2.8E+02 0.0095 24.4 12.0 49 474-522 30-78 (101)
242 1kk8_A Myosin heavy chain, str 30.6 13 0.00043 44.8 0.7 34 187-220 152-186 (837)
243 1rz3_A Hypothetical protein rb 30.0 17 0.00058 35.1 1.4 18 203-220 22-39 (201)
244 2ehv_A Hypothetical protein PH 30.0 12 0.00042 36.5 0.4 17 205-221 32-48 (251)
245 1w7j_A Myosin VA; motor protei 30.0 14 0.00047 44.3 0.8 34 187-220 139-173 (795)
246 2ycu_A Non muscle myosin 2C, a 29.9 14 0.00047 45.4 0.8 34 187-220 129-163 (995)
247 2jee_A YIIU; FTSZ, septum, coi 29.6 2.7E+02 0.0092 23.9 9.7 57 468-524 14-70 (81)
248 2bdt_A BH3686; alpha-beta prot 29.6 13 0.00044 35.2 0.4 16 205-220 4-19 (189)
249 2gza_A Type IV secretion syste 29.5 12 0.00042 40.0 0.3 20 199-220 173-192 (361)
250 2pt7_A CAG-ALFA; ATPase, prote 29.5 12 0.00042 39.6 0.3 19 200-220 170-188 (330)
251 3o0z_A RHO-associated protein 29.4 4E+02 0.014 25.8 10.8 10 505-514 121-130 (168)
252 4db1_A Myosin-7; S1DC, cardiac 29.4 14 0.00049 44.1 0.8 22 199-220 167-188 (783)
253 2ic9_A Nucleocapsid protein; h 29.3 2.9E+02 0.01 24.4 8.9 27 496-522 46-72 (96)
254 3c8u_A Fructokinase; YP_612366 29.1 16 0.00055 35.3 1.0 19 202-220 21-39 (208)
255 2z83_A Helicase/nucleoside tri 29.0 18 0.00062 39.8 1.5 16 205-220 23-38 (459)
256 4a2q_A RIG-I, retinoic acid in 28.8 15 0.00052 43.3 0.9 25 194-220 256-280 (797)
257 3vaa_A Shikimate kinase, SK; s 28.7 15 0.00051 35.3 0.7 16 205-220 27-42 (199)
258 1kht_A Adenylate kinase; phosp 28.7 16 0.00053 34.1 0.8 17 204-220 4-20 (192)
259 2b8t_A Thymidine kinase; deoxy 28.6 9.9 0.00034 38.3 -0.6 19 204-222 13-31 (223)
260 2whx_A Serine protease/ntpase/ 28.6 22 0.00076 41.1 2.2 24 195-220 180-203 (618)
261 2orw_A Thymidine kinase; TMTK, 28.5 9.6 0.00033 36.8 -0.7 17 205-221 5-21 (184)
262 1gm5_A RECG; helicase, replica 28.5 14 0.00047 44.1 0.5 39 179-220 368-406 (780)
263 1znw_A Guanylate kinase, GMP k 28.4 14 0.00047 35.8 0.4 16 205-220 22-37 (207)
264 2zj8_A DNA helicase, putative 28.4 13 0.00043 43.4 0.2 21 198-220 36-56 (720)
265 4anj_A Unconventional myosin-V 28.2 15 0.00052 45.2 0.8 35 186-220 126-161 (1052)
266 3lay_A Zinc resistance-associa 28.0 2.7E+02 0.0092 27.1 9.5 63 56-124 81-143 (175)
267 2i3b_A HCR-ntpase, human cance 27.8 14 0.00048 36.0 0.3 16 205-220 3-18 (189)
268 1uf9_A TT1252 protein; P-loop, 27.8 18 0.00061 34.2 1.1 21 200-220 5-25 (203)
269 1kag_A SKI, shikimate kinase I 27.7 16 0.00053 33.8 0.6 16 205-220 6-21 (173)
270 4a2w_A RIG-I, retinoic acid in 27.6 16 0.00054 44.3 0.8 25 194-220 256-280 (936)
271 1oyw_A RECQ helicase, ATP-depe 27.6 8.5 0.00029 43.4 -1.5 25 194-220 33-57 (523)
272 2v66_B Nuclear distribution pr 27.5 1.7E+02 0.0059 26.5 7.4 23 55-77 37-59 (111)
273 3kta_A Chromosome segregation 27.5 15 0.0005 34.4 0.4 16 205-220 28-43 (182)
274 2d7d_A Uvrabc system protein B 27.3 23 0.0008 41.2 2.1 87 171-261 4-97 (661)
275 2oca_A DAR protein, ATP-depend 27.3 12 0.00043 41.1 -0.2 25 195-221 122-146 (510)
276 2qmh_A HPR kinase/phosphorylas 27.0 19 0.00064 36.2 1.1 24 197-220 28-51 (205)
277 3u59_A Tropomyosin beta chain; 26.6 3.2E+02 0.011 23.8 12.0 49 474-522 30-78 (101)
278 1z6g_A Guanylate kinase; struc 26.6 15 0.00052 36.1 0.3 15 206-220 26-40 (218)
279 3swf_A CGMP-gated cation chann 26.6 2.7E+02 0.0092 23.5 7.8 41 480-520 6-50 (74)
280 3kb2_A SPBC2 prophage-derived 26.6 17 0.00058 33.2 0.7 16 205-220 3-18 (173)
281 2og2_A Putative signal recogni 26.5 16 0.00054 39.6 0.4 17 204-220 158-174 (359)
282 4a74_A DNA repair and recombin 26.4 16 0.00053 35.2 0.3 29 192-220 11-42 (231)
283 2ze6_A Isopentenyl transferase 26.3 16 0.00056 36.8 0.5 15 205-219 3-17 (253)
284 1knq_A Gluconate kinase; ALFA/ 26.0 17 0.00057 33.8 0.5 16 205-220 10-25 (175)
285 3dm5_A SRP54, signal recogniti 26.0 22 0.00076 39.6 1.5 21 201-221 98-118 (443)
286 3uie_A Adenylyl-sulfate kinase 25.9 19 0.00065 34.5 0.9 18 203-220 25-42 (200)
287 2fna_A Conserved hypothetical 25.7 18 0.00063 37.0 0.8 17 204-220 31-47 (357)
288 3rc3_A ATP-dependent RNA helic 25.6 17 0.00058 42.6 0.5 21 197-219 151-171 (677)
289 3kl4_A SRP54, signal recogniti 25.5 21 0.00073 39.6 1.3 18 203-220 97-114 (433)
290 3q8t_A Beclin-1; autophagy, AT 25.5 1.8E+02 0.0061 25.5 7.1 49 55-106 6-54 (96)
291 1gku_B Reverse gyrase, TOP-RG; 25.4 21 0.00071 44.0 1.3 23 194-218 64-86 (1054)
292 1r6b_X CLPA protein; AAA+, N-t 25.3 19 0.00064 42.2 0.8 42 173-221 184-225 (758)
293 4e61_A Protein BIM1; EB1-like 25.3 3.7E+02 0.013 24.1 9.4 51 471-521 8-58 (106)
294 1vma_A Cell division protein F 25.1 17 0.00058 38.3 0.4 18 203-220 104-121 (306)
295 1uaa_A REP helicase, protein ( 24.9 17 0.00057 42.1 0.3 19 203-221 15-33 (673)
296 1tev_A UMP-CMP kinase; ploop, 24.9 19 0.00065 33.5 0.7 16 205-220 5-20 (196)
297 2qt1_A Nicotinamide riboside k 24.7 15 0.00053 35.2 -0.0 27 192-220 12-38 (207)
298 3s4r_A Vimentin; alpha-helix, 24.7 3.4E+02 0.012 23.5 10.6 56 469-526 18-73 (93)
299 2xzl_A ATP-dependent helicase 24.6 19 0.00065 43.0 0.7 17 205-221 377-393 (802)
300 3t5d_A Septin-7; GTP-binding p 24.4 18 0.00063 36.6 0.5 21 200-220 5-25 (274)
301 2rhm_A Putative kinase; P-loop 24.4 19 0.00067 33.6 0.6 17 204-220 6-22 (193)
302 3cm0_A Adenylate kinase; ATP-b 24.3 20 0.00069 33.4 0.7 16 205-220 6-21 (186)
303 3pxi_A Negative regulator of g 24.3 30 0.001 40.6 2.3 42 173-221 178-219 (758)
304 1jcd_A Major outer membrane li 24.3 1.5E+02 0.0052 23.3 5.6 28 53-80 4-31 (52)
305 3cvf_A Homer-3, homer protein 24.2 3E+02 0.01 23.5 7.9 38 495-532 13-52 (79)
306 1xx6_A Thymidine kinase; NESG, 24.1 13 0.00045 36.4 -0.7 18 205-222 10-27 (191)
307 2vli_A Antibiotic resistance p 24.0 24 0.00082 32.7 1.2 17 204-220 6-22 (183)
308 3tnu_B Keratin, type II cytosk 23.9 2.1E+02 0.0073 26.0 7.6 16 506-521 79-94 (129)
309 2r2a_A Uncharacterized protein 23.6 18 0.00063 35.6 0.3 16 205-220 7-22 (199)
310 1e6c_A Shikimate kinase; phosp 23.6 20 0.00069 32.9 0.5 16 205-220 4-19 (173)
311 2qor_A Guanylate kinase; phosp 23.6 20 0.0007 34.4 0.6 16 205-220 14-29 (204)
312 1yke_B RNA polymerase II holoe 23.6 2.2E+02 0.0077 27.0 7.8 38 89-126 90-127 (151)
313 3nbx_X ATPase RAVA; AAA+ ATPas 23.5 19 0.00066 40.6 0.5 23 196-220 36-58 (500)
314 2wjy_A Regulator of nonsense t 23.5 20 0.00068 42.8 0.6 17 205-221 373-389 (800)
315 3asz_A Uridine kinase; cytidin 23.5 19 0.00065 34.5 0.3 16 205-220 8-23 (211)
316 1y63_A LMAJ004144AAA protein; 23.5 20 0.00069 33.9 0.5 16 205-220 12-27 (184)
317 1ykh_B RNA polymerase II holoe 23.4 1.5E+02 0.0051 27.5 6.4 38 89-126 90-127 (132)
318 1f2t_A RAD50 ABC-ATPase; DNA d 23.3 21 0.00072 33.1 0.6 16 205-220 25-40 (149)
319 2bbw_A Adenylate kinase 4, AK4 23.2 20 0.00067 35.6 0.4 17 204-220 28-44 (246)
320 3i00_A HIP-I, huntingtin-inter 22.8 3.7E+02 0.013 24.5 8.9 41 480-523 21-61 (120)
321 1ci6_A Transcription factor AT 22.7 3E+02 0.01 22.1 7.5 9 506-514 48-56 (63)
322 2iyv_A Shikimate kinase, SK; t 22.6 21 0.00073 33.3 0.5 15 205-219 4-18 (184)
323 2p6r_A Afuhel308 helicase; pro 22.6 13 0.00044 43.2 -1.2 32 180-220 26-57 (702)
324 1nlf_A Regulatory protein REPA 22.5 28 0.00097 35.2 1.4 35 186-220 11-47 (279)
325 3mq7_A Bone marrow stromal ant 22.5 3.8E+02 0.013 24.5 8.5 18 503-520 72-89 (121)
326 3cf2_A TER ATPase, transitiona 22.5 34 0.0012 41.0 2.3 74 171-244 200-296 (806)
327 3e1s_A Exodeoxyribonuclease V, 22.4 21 0.00073 40.8 0.5 26 194-221 197-222 (574)
328 1nks_A Adenylate kinase; therm 22.3 23 0.00078 32.9 0.7 16 205-220 3-18 (194)
329 3o8b_A HCV NS3 protease/helica 22.2 27 0.00094 40.9 1.4 17 205-221 234-250 (666)
330 2bwj_A Adenylate kinase 5; pho 22.2 23 0.00077 33.3 0.6 16 205-220 14-29 (199)
331 1f5n_A Interferon-induced guan 22.1 4.1E+02 0.014 30.5 11.1 37 501-537 518-554 (592)
332 2w83_C C-JUN-amino-terminal ki 22.1 2E+02 0.007 24.4 6.2 66 57-125 6-71 (77)
333 3l9o_A ATP-dependent RNA helic 22.0 20 0.0007 44.3 0.3 24 194-219 192-215 (1108)
334 4eun_A Thermoresistant glucoki 21.9 22 0.00075 34.1 0.4 16 205-220 31-46 (200)
335 2iut_A DNA translocase FTSK; n 21.9 21 0.0007 41.2 0.3 17 204-220 215-231 (574)
336 1lwu_C Fibrinogen gamma chain; 21.5 2.1E+02 0.0072 30.5 7.9 26 473-498 11-36 (323)
337 1moz_A ARL1, ADP-ribosylation 21.5 29 0.001 31.7 1.2 27 194-220 8-35 (183)
338 2qag_A Septin-2, protein NEDD5 21.5 21 0.00071 38.3 0.2 24 197-220 31-54 (361)
339 2w6b_A RHO guanine nucleotide 21.5 3.1E+02 0.011 21.8 7.1 28 472-499 8-35 (56)
340 2qen_A Walker-type ATPase; unk 21.4 20 0.0007 36.6 0.1 17 204-220 32-48 (350)
341 2xgj_A ATP-dependent RNA helic 21.3 22 0.00075 43.6 0.3 25 194-220 94-118 (1010)
342 3t61_A Gluconokinase; PSI-biol 21.2 24 0.00084 33.6 0.6 17 204-220 19-35 (202)
343 3sja_C Golgi to ER traffic pro 21.2 2.9E+02 0.0099 22.8 6.9 52 58-109 4-57 (65)
344 3na7_A HP0958; flagellar bioge 21.2 4.1E+02 0.014 26.8 9.9 35 480-514 110-144 (256)
345 3he5_A Synzip1; heterodimeric 21.2 2.6E+02 0.009 20.9 6.7 37 478-514 7-43 (49)
346 2pt5_A Shikimate kinase, SK; a 21.1 25 0.00084 32.2 0.6 16 205-220 2-17 (168)
347 3u06_A Protein claret segregat 21.1 2.4E+02 0.0081 31.0 8.5 36 486-521 8-43 (412)
348 1via_A Shikimate kinase; struc 21.0 25 0.00085 32.7 0.6 16 205-220 6-21 (175)
349 2v71_A Nuclear distribution pr 21.0 1.5E+02 0.0053 29.2 6.3 9 510-518 131-139 (189)
350 3m6a_A ATP-dependent protease 20.9 23 0.00078 40.2 0.4 18 203-220 108-125 (543)
351 1htw_A HI0065; nucleotide-bind 20.9 23 0.0008 33.4 0.4 16 205-220 35-50 (158)
352 3tif_A Uncharacterized ABC tra 20.9 23 0.0008 35.5 0.4 16 205-220 33-48 (235)
353 3t98_B Nucleoporin NUP58/NUP45 20.9 3.4E+02 0.012 23.7 7.8 60 51-110 10-84 (93)
354 2b6h_A ADP-ribosylation factor 20.8 34 0.0012 32.2 1.5 29 192-220 18-46 (192)
355 1qf9_A UMP/CMP kinase, protein 20.7 24 0.00083 32.7 0.5 16 205-220 8-23 (194)
356 2c95_A Adenylate kinase 1; tra 20.7 25 0.00087 32.9 0.6 16 205-220 11-26 (196)
357 3bas_A Myosin heavy chain, str 20.7 4E+02 0.014 22.8 9.7 36 479-514 19-54 (89)
358 2v71_A Nuclear distribution pr 20.5 2.6E+02 0.0089 27.6 7.8 65 55-122 90-154 (189)
359 1ukz_A Uridylate kinase; trans 20.4 26 0.00087 33.4 0.5 17 204-220 16-32 (203)
360 2zts_A Putative uncharacterize 20.3 37 0.0013 32.9 1.8 29 192-220 16-47 (251)
361 1a5t_A Delta prime, HOLB; zinc 20.3 34 0.0012 35.8 1.6 22 199-220 19-41 (334)
362 1zd8_A GTP:AMP phosphotransfer 20.3 25 0.00086 34.3 0.5 16 205-220 9-24 (227)
363 3a4m_A L-seryl-tRNA(SEC) kinas 20.2 27 0.00091 35.3 0.7 17 204-220 5-21 (260)
364 3crm_A TRNA delta(2)-isopenten 20.1 30 0.001 36.9 1.1 16 204-219 6-21 (323)
365 1go4_E MAD1 (mitotic arrest de 20.1 1.5E+02 0.005 26.5 5.3 27 51-77 17-43 (100)
366 4ddu_A Reverse gyrase; topoiso 20.0 30 0.001 42.8 1.2 24 194-219 86-109 (1104)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-96 Score=809.12 Aligned_cols=386 Identities=42% Similarity=0.603 Sum_probs=321.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFC 132 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~ 132 (762)
++|..|..+|..++.+..+|. +.++.+..++++++++|.+++.+||+|||+++|++|||||||
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~-----------------~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~v 65 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALK-----------------EKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYL 65 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344555555555555444444 445567888999999999999999999999999999999999
Q ss_pred EeCCCCcc-cccCCCceEEE-ecCCCC-ceEEEee--CCCCceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEE
Q 004310 133 RCRPLNKA-ENANGSTSVVE-FDSSQE-NELQIVS--SDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIF 207 (762)
Q Consensus 133 RvRPl~~~-E~~~~~~~vv~-~~~~~~-~~l~v~~--~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~If 207 (762)
||||+... |........+. ++.... ..+.+.. .....+.|.||+||+++++|++||+.+.|+|+++++|||+|||
T Consensus 66 RvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tif 145 (403)
T 4etp_A 66 RIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIF 145 (403)
T ss_dssp EECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEE
Confidence 99999877 33332222222 222211 1233322 2234578999999999999999999988999999999999999
Q ss_pred eeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEccccccccccCCCC-----CCcccee
Q 004310 208 AYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRDLLVENSNQ-----PSKKLEI 281 (762)
Q Consensus 208 AYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~-----~~~~l~I 281 (762)
|||||||||||||+|+ ++|||||++++||..++. ....+.|.|+|||+|||||+|+|||.+.... ...++.+
T Consensus 146 AYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i 223 (403)
T 4etp_A 146 AYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223 (403)
T ss_dssp EESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCE
T ss_pred EECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceee
Confidence 9999999999999996 469999999999998775 3456899999999999999999999875421 2456789
Q ss_pred eeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccC
Q 004310 282 KQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361 (762)
Q Consensus 282 r~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAG 361 (762)
++++..+.++|.|++++.|.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+||||||
T Consensus 224 ~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAG 303 (403)
T 4etp_A 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 303 (403)
T ss_dssp EEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred EEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCC
Confidence 99888788899999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred cccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC---CccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG---HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 362 SER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~---hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
|||++++++.|+|++|+++||+||++||+||.||+++.. ||||||||||+||||+|||||+|+|||||||+..+++|
T Consensus 304 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~E 383 (403)
T 4etp_A 304 SERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 383 (403)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHH
T ss_pred CccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999997654 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccCCC
Q 004310 439 TLCSLNFASRVRGIESGPA 457 (762)
Q Consensus 439 TLsTLrFAsrak~I~~~p~ 457 (762)
|++||+||+||++|+.+|.
T Consensus 384 Tl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 384 TLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhhcccCCC
Confidence 9999999999999998874
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=7.2e-94 Score=794.91 Aligned_cols=378 Identities=38% Similarity=0.593 Sum_probs=310.6
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCccc
Q 004310 62 IENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAE 141 (762)
Q Consensus 62 i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~~~E 141 (762)
...|+.|...|+++.++ +.+.++.+..+++.++++|.+++.+||+|||+++|++|||||||||||+...|
T Consensus 5 ~~~l~~el~~~~~~~~~----------l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E 74 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEE----------LLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESE 74 (412)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGG
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchh
Confidence 34455555555555543 34556667888999999999999999999999999999999999999999988
Q ss_pred ccCCCceEEEecCCCCceEEEeeCC------CCceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCC
Q 004310 142 NANGSTSVVEFDSSQENELQIVSSD------SSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTG 215 (762)
Q Consensus 142 ~~~~~~~vv~~~~~~~~~l~v~~~~------~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSG 215 (762)
...+. +++.+.+. ..+.+.... ...+.|.||+||+++++|++||+.+.|+|+++++|||+|||||||||||
T Consensus 75 ~~~~~-~~~~~~~~--~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSG 151 (412)
T 3u06_A 75 ENRMC-CTWTYHDE--STVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 151 (412)
T ss_dssp TTSCB-CEEEEEET--TEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSS
T ss_pred ccCcc-eEEEecCC--CEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCC
Confidence 65543 33333322 233333221 1257899999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEccccccccccCCCCCCccceeee--ccCCCeEEe
Q 004310 216 KTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQ--AAEGGTQEV 292 (762)
Q Consensus 216 KTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~--~~~~g~~~V 292 (762)
|||||+|+++++|||||++++||..+.. ....+.|.|+|||+|||||+|+|||.+.. ..+.++. ++. +.++|
T Consensus 152 KTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~----~~~~i~~~~~~~-~~~~v 226 (412)
T 3u06_A 152 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ----KDMEIRMAKNNK-NDIYV 226 (412)
T ss_dssp HHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSC----CCCCEEECSSCT-TSEEE
T ss_pred CeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCC----CCceeeeeecCC-CCEEE
Confidence 9999999999999999999999998865 33468999999999999999999996532 3445554 444 55789
Q ss_pred CCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccccccccch
Q 004310 293 PGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDG 372 (762)
Q Consensus 293 ~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~~kt~~~g 372 (762)
.|++++.|.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+|||||||||.. .|
T Consensus 227 ~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~ 302 (412)
T 3u06_A 227 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TS 302 (412)
T ss_dssp TTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----cc
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999975 47
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 373 ERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 373 ~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
.|++|+++||+||++||+||.||+.++.||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|
T Consensus 303 ~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i 382 (412)
T 3u06_A 303 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 382 (412)
T ss_dssp ------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccc
Q 004310 453 ESGPARKQS 461 (762)
Q Consensus 453 ~~~p~~~~~ 461 (762)
+.++++++.
T Consensus 383 ~~~~~~~n~ 391 (412)
T 3u06_A 383 KMTKAKRNR 391 (412)
T ss_dssp CC-------
T ss_pred ccccccccc
Confidence 999887654
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.1e-92 Score=773.38 Aligned_cols=337 Identities=45% Similarity=0.666 Sum_probs=307.4
Q ss_pred hhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhccchhhhhhccC
Q 004310 122 IELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDG 201 (762)
Q Consensus 122 ~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldG 201 (762)
+|++|||||||||||++..|...+...++.. .+...+......+..+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G 78 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRS--VDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDG 78 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEE--CSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTT
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEc--CCcEEEEecCCCCCceEEecCEEECCCCCcceehhhhhhhhHhhhcC
Confidence 5899999999999999999877665433332 22334444444556789999999999999999999999999999999
Q ss_pred cceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcccee
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEI 281 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~I 281 (762)
||+||||||||||||||||+|+++++|||||++++||+.++.....+.|.|+|||+|||||+|+|||.+... ....+.|
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-~~~~l~i 157 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA-KRLKLDI 157 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS-CCCCCEE
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc-CCcceEE
Confidence 999999999999999999999999999999999999999988777789999999999999999999987532 2457899
Q ss_pred eeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccC
Q 004310 282 KQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361 (762)
Q Consensus 282 r~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAG 361 (762)
++++.++ ++|.|++++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+||||||
T Consensus 158 ~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAG 236 (369)
T 3cob_A 158 KKDSKGM-VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236 (369)
T ss_dssp EECTTSC-EEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred EECCCCC-EEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCC
Confidence 9998855 679999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred cccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHH
Q 004310 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLC 441 (762)
Q Consensus 362 SER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLs 441 (762)
|||++++++.|.|++|+++||+||++||+||.||+++..||||||||||+||||+|||||+|+|||||||+..+++||++
T Consensus 237 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~ 316 (369)
T 3cob_A 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHN 316 (369)
T ss_dssp SSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHH
T ss_pred CCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhccccCCCccccc
Q 004310 442 SLNFASRVRGIESGPARKQSD 462 (762)
Q Consensus 442 TLrFAsrak~I~~~p~~~~~~ 462 (762)
||+||+||+.|++.|..+...
T Consensus 317 TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 317 SLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHTCBCCCCCCEEC
T ss_pred HHHHHHHHhhcccCCcccCCH
Confidence 999999999999999887654
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.6e-91 Score=763.79 Aligned_cols=338 Identities=43% Similarity=0.628 Sum_probs=255.9
Q ss_pred HHHHHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecC------CCCceEEEee------------CCCCceeeecC
Q 004310 114 RKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDS------SQENELQIVS------------SDSSKKQFKFD 175 (762)
Q Consensus 114 Rk~l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~------~~~~~l~v~~------------~~~~~k~F~FD 175 (762)
-.+|||++++++|||||||||||+++.|...+...+ .++. .+...+.+.. .....+.|.||
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD 88 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLL-LFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFD 88 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGS-BCCC------CCCCEEECCC-----------------CEEECS
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceE-EEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeec
Confidence 457999999999999999999999999976653221 1211 1122232221 01234689999
Q ss_pred eeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCC----CCCCchhhhHHHHHHHhhcc-CCceeE
Q 004310 176 YVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP----ENRGVNYRTLEELFRVSKHR-NGIMRY 250 (762)
Q Consensus 176 ~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~----~~~GIipRal~~LF~~~~~~-~~~~~~ 250 (762)
+||+++++|++||+.+.|+|+++|+|||+||||||||||||||||+|++ +++|||||++++||+.++.. ...+.|
T Consensus 89 ~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~ 168 (376)
T 2rep_A 89 RVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTY 168 (376)
T ss_dssp EEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred EEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEE
Confidence 9999999999999998899999999999999999999999999999975 36899999999999988754 345899
Q ss_pred EEEEEEEEEEccccccccccCCC-CCCccceeeecc-CCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCC
Q 004310 251 ELFVSMLEVYNEKIRDLLVENSN-QPSKKLEIKQAA-EGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELS 328 (762)
Q Consensus 251 ~V~vS~lEIYNE~I~DLL~~~s~-~~~~~l~Ir~~~-~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~S 328 (762)
.|+|||+|||||+|+|||++... .....+.|+++. ..+.++|.|++++.|.+++|++.+|..|.++|++++|.||+.|
T Consensus 169 ~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~S 248 (376)
T 2rep_A 169 SFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS 248 (376)
T ss_dssp EEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CG
T ss_pred EEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCC
Confidence 99999999999999999987532 223568888884 2355789999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccccccccch----hhhHHHHHHhhhHHHHHHHHHHHhcCCCCccC
Q 004310 329 SRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDG----ERLKESQFINKSLSALGDVISALASKSGHIPY 404 (762)
Q Consensus 329 SRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~~kt~~~g----~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPY 404 (762)
||||+||+|+|.+.+...+....|+|+|||||||||++++++.| +|++|+++||+||++||+||.||+++..||||
T Consensus 249 SRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPY 328 (376)
T 2rep_A 249 SRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPY 328 (376)
T ss_dssp GGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCG
T ss_pred CCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCC
Confidence 99999999999998887788889999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 405 RNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 405 RdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
||||||+||||+|||||+|+|||||||+..+++||++||+||+||+++
T Consensus 329 RdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 329 RNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999864
No 5
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-90 Score=746.06 Aligned_cols=326 Identities=50% Similarity=0.769 Sum_probs=286.6
Q ss_pred hcCCCEEEEEEeCCCCcccccCC-CceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhccchhhhhhccC
Q 004310 123 ELKGNIRVFCRCRPLNKAENANG-STSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDG 201 (762)
Q Consensus 123 elkGnIRV~~RvRPl~~~E~~~~-~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldG 201 (762)
+++|||||+|||||++..|...+ ...++.++..+...+.+.. .+..+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G 79 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH-KGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDG 79 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE-TTEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTT
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC-CCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCC
Confidence 47999999999999999887543 3456777665444444433 445789999999999999999999999999999999
Q ss_pred cceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcccee
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEI 281 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~I 281 (762)
||+||||||||||||||||+|+++++|||||++++||..++.....+.|.|+|||+|||||+|+|||.+.. ..++.+
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---~~~l~i 156 (330)
T 2h58_A 80 FNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEP---QEKLEI 156 (330)
T ss_dssp CCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSS---CCCCCC
T ss_pred CEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccc---cccceE
Confidence 99999999999999999999999999999999999999998887789999999999999999999997642 234556
Q ss_pred ee--ccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEec
Q 004310 282 KQ--AAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDL 359 (762)
Q Consensus 282 r~--~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDL 359 (762)
+. +.. |.++|+|++++.|.|++|++++|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+||||
T Consensus 157 ~~~~~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDL 235 (330)
T 2h58_A 157 RLCPDGS-GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDL 235 (330)
T ss_dssp EECTTSS-CCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred EEeecCC-CCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeC
Confidence 54 444 557799999999999999999999999999999999999999999999999999888788888999999999
Q ss_pred cCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhh
Q 004310 360 AGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGET 439 (762)
Q Consensus 360 AGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ET 439 (762)
|||||.+++++.|.|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 236 AGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ET 315 (330)
T 2h58_A 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSET 315 (330)
T ss_dssp CCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhccc
Q 004310 440 LCSLNFASRVRGIE 453 (762)
Q Consensus 440 LsTLrFAsrak~I~ 453 (762)
++||+||+||++|+
T Consensus 316 l~TL~fA~rak~i~ 329 (330)
T 2h58_A 316 LYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhCc
Confidence 99999999999986
No 6
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=3.3e-90 Score=752.14 Aligned_cols=333 Identities=43% Similarity=0.655 Sum_probs=272.0
Q ss_pred hhcCCCEEEEEEeCCCCcccccCCCceEEEecCCC--CceEEEeeCC--CCceeeecCeeeCCCCChhHHHhccchhhhh
Q 004310 122 IELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQ--ENELQIVSSD--SSKKQFKFDYVFKPEDNQEAVFAQTKPVVTS 197 (762)
Q Consensus 122 ~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~--~~~l~v~~~~--~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~s 197 (762)
++|||||||||||||++..|...+...++.+.... ...+.+.... ...+.|.||+||+++++|++||+++.|+|++
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~ 80 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQS 80 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHHHHHHHG
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHHHHHHHH
Confidence 47999999999999999998877665555432221 2234443332 2357899999999999999999999999999
Q ss_pred hccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEccccccccccCCCC--
Q 004310 198 VLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRDLLVENSNQ-- 274 (762)
Q Consensus 198 vldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~-- 274 (762)
+++|||+||||||||||||||||+|+ ++|||||++++||+.+.. ....+.|.|+|||+|||||+|+|||.+....
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 158 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN 158 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccc
Confidence 99999999999999999999999996 469999999999998765 3445899999999999999999999864321
Q ss_pred -----CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCce
Q 004310 275 -----PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQK 349 (762)
Q Consensus 275 -----~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~ 349 (762)
...++.|++++.++.++|+|++++.|.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+..
T Consensus 159 ~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 238 (349)
T 3t0q_A 159 IDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGET 238 (349)
T ss_dssp --------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCE
T ss_pred cccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCe
Confidence 245788999888777889999999999999999999999999999999999999999999999999999888888
Q ss_pred EEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC---CccCCCCchhhhcccccCCCceeeEE
Q 004310 350 TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG---HIPYRNSKLTHILQSSLGGDCKTLMF 426 (762)
Q Consensus 350 ~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~---hIPYRdSKLT~LLqdsLgGnskT~mI 426 (762)
..|+|+|||||||||++++++.|+|++|+++||+||++||+||.||+++.. ||||||||||+||||+|||||+|+||
T Consensus 239 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi 318 (349)
T 3t0q_A 239 SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMF 318 (349)
T ss_dssp EEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEE
T ss_pred eEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999999999999999999999999987654 99999999999999999999999999
Q ss_pred EecCCCCCChHhhHHHHHHHhHhhccccCC
Q 004310 427 VQISPSSSDLGETLCSLNFASRVRGIESGP 456 (762)
Q Consensus 427 ~~ISP~~~~~~ETLsTLrFAsrak~I~~~p 456 (762)
|||||+..+++||++||+||+||++|+.++
T Consensus 319 ~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 319 VNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999998764
No 7
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=5.2e-90 Score=750.09 Aligned_cols=330 Identities=39% Similarity=0.613 Sum_probs=274.3
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC---------CCCceeeecCeeeCCCCChhHHHhc-cchh
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS---------DSSKKQFKFDYVFKPEDNQEAVFAQ-TKPV 194 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~---------~~~~k~F~FD~VF~~~~tQ~eVf~~-~~pl 194 (762)
.|||||+|||||++..|...+...++.+++. ...+.+... ....+.|.||+||+++++|++||+. +.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEA-SAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGG-GTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCC-CCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 5899999999999999988888778877654 233444321 2346789999999999999999998 6999
Q ss_pred hhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQ 274 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~ 274 (762)
|+++++|||+||||||||||||||||+|+++++|||||++++||+.++.....+.|.|+|||+|||||+|+|||.+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~---- 157 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN---- 157 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT----
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC----
Confidence 9999999999999999999999999999999999999999999999987777799999999999999999999963
Q ss_pred CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCC--ceEEE
Q 004310 275 PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLING--QKTKS 352 (762)
Q Consensus 275 ~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g--~~~~S 352 (762)
...+.|++++.+| ++|.|++++.|.+++|++++|..|.++|++++|.+|+.|||||+||+|+|...+...+ ....|
T Consensus 158 -~~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~s 235 (350)
T 2vvg_A 158 -NTKLPLKEDKTRG-IYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG 235 (350)
T ss_dssp -EEEECEEEETTTE-EEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEE
T ss_pred -CcCceeeEcCCCC-EEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEE
Confidence 3578999998854 6799999999999999999999999999999999999999999999999988765443 35679
Q ss_pred EEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCC
Q 004310 353 HLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPS 432 (762)
Q Consensus 353 kL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~ 432 (762)
+|+|||||||||.+++++.|++++|+++||+||++||+||.||+++..||||||||||+||||+|||||+|+||+||||+
T Consensus 236 kl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~ 315 (350)
T 2vvg_A 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPA 315 (350)
T ss_dssp EEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred EEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhhHHHHHHHhHhhccccCCCcccc
Q 004310 433 SSDLGETLCSLNFASRVRGIESGPARKQS 461 (762)
Q Consensus 433 ~~~~~ETLsTLrFAsrak~I~~~p~~~~~ 461 (762)
..+++||++||+||+||+.|++.|..++.
T Consensus 316 ~~~~~ETl~TL~fA~rak~i~n~~~~n~~ 344 (350)
T 2vvg_A 316 STNYDETMSTLRYADRAKQIKNKPRINED 344 (350)
T ss_dssp GGGHHHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred cccHHHHHHHHHHHHHHhhccccceecCC
Confidence 99999999999999999999999988764
No 8
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=4.7e-90 Score=754.21 Aligned_cols=330 Identities=43% Similarity=0.634 Sum_probs=287.3
Q ss_pred hcCCCEEEEEEeCCCCcccccCCCceEEEecCCC-CceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhcc
Q 004310 123 ELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQ-ENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLD 200 (762)
Q Consensus 123 elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~-~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svld 200 (762)
..+|||||+|||||++..|...+...++.+++.. ...+.+ ..+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 82 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLA 82 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhC
Confidence 4679999999999999999888888888887642 223322 24789999999999999999998 6899999999
Q ss_pred CcceeEEeeccCCCCCccccCCCC---CCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCc
Q 004310 201 GYNVCIFAYGQTGTGKTFTMEGTP---ENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK 277 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~ 277 (762)
|||+||||||||||||||||+|+. .++|||||++++||..+......+.|.|+|||+|||||+|+|||++. ..
T Consensus 83 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~----~~ 158 (365)
T 2y65_A 83 GYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS----KV 158 (365)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT----CC
T ss_pred CCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCC----cC
Confidence 999999999999999999999964 45799999999999999877777899999999999999999999653 35
Q ss_pred cceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEE
Q 004310 278 KLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLV 357 (762)
Q Consensus 278 ~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LV 357 (762)
.+.+++++.++ ++|.|++++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+||
T Consensus 159 ~l~i~e~~~~~-~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lV 237 (365)
T 2y65_A 159 NLSVHEDKNRV-PYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLV 237 (365)
T ss_dssp SBCEEECSSSC-EEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEE
T ss_pred CceEEECCCCC-EEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEE
Confidence 78899998855 57999999999999999999999999999999999999999999999999998888888889999999
Q ss_pred eccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCCh
Q 004310 358 DLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK-SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDL 436 (762)
Q Consensus 358 DLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~ 436 (762)
|||||||++++++.|.+++|+++||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+||||+..++
T Consensus 238 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~ 317 (365)
T 2y65_A 238 DLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNE 317 (365)
T ss_dssp ECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGH
T ss_pred ECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCH
Confidence 99999999999999999999999999999999999999986 57999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhHhhccccCCCccccc
Q 004310 437 GETLCSLNFASRVRGIESGPARKQSD 462 (762)
Q Consensus 437 ~ETLsTLrFAsrak~I~~~p~~~~~~ 462 (762)
+||++||+||+||+.|++.|..|...
T Consensus 318 ~ETl~TL~fA~rak~I~n~~~~n~~~ 343 (365)
T 2y65_A 318 SETKSTLDFGRRAKTVKNVVCVNEEL 343 (365)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCEEEC
T ss_pred HHHHHHHHHHHHHhcccCcceeCCCC
Confidence 99999999999999999999877543
No 9
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.4e-89 Score=744.71 Aligned_cols=330 Identities=44% Similarity=0.659 Sum_probs=274.9
Q ss_pred cCCCEEEEEEeCCCCc-ccccCCCceEEEecC---CC-CceEEEee--CCCCceeeecCeeeCCCCChhHHHhccchhhh
Q 004310 124 LKGNIRVFCRCRPLNK-AENANGSTSVVEFDS---SQ-ENELQIVS--SDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVT 196 (762)
Q Consensus 124 lkGnIRV~~RvRPl~~-~E~~~~~~~vv~~~~---~~-~~~l~v~~--~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~ 196 (762)
|||||||||||||++. .|. ....++.+.. .. ...+.+.. .....+.|.||+||+++++|++||+++.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999987 443 2334444432 11 12344433 23456899999999999999999999899999
Q ss_pred hhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhcc-CCceeEEEEEEEEEEEccccccccccCCCC-
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR-NGIMRYELFVSMLEVYNEKIRDLLVENSNQ- 274 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~- 274 (762)
++++|||+||||||||||||||||+|+ ++|||||++++||..++.. ...+.|.|+|||+|||||+|+|||.+....
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999995 5799999999999988753 345799999999999999999999875432
Q ss_pred ----CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceE
Q 004310 275 ----PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKT 350 (762)
Q Consensus 275 ----~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~ 350 (762)
...++.|++++..+.++|.|++++.|.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+...
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHS 236 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEE
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCcee
Confidence 1346789988777788999999999999999999999999999999999999999999999999999887778888
Q ss_pred EEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC---CCccCCCCchhhhcccccCCCceeeEEE
Q 004310 351 KSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS---GHIPYRNSKLTHILQSSLGGDCKTLMFV 427 (762)
Q Consensus 351 ~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLgGnskT~mI~ 427 (762)
.|+|+|||||||||++++++.|+|++|+++||+||++||+||.||+++. .||||||||||+||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999876 7999999999999999999999999999
Q ss_pred ecCCCCCChHhhHHHHHHHhHhhccccCCC
Q 004310 428 QISPSSSDLGETLCSLNFASRVRGIESGPA 457 (762)
Q Consensus 428 ~ISP~~~~~~ETLsTLrFAsrak~I~~~p~ 457 (762)
||||+..+++||++||+||+||++|+.++.
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999998863
No 10
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-89 Score=753.23 Aligned_cols=335 Identities=33% Similarity=0.520 Sum_probs=257.0
Q ss_pred HhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee--CCCCceeeecCeeeCCCCChhHHHhc-cchhhh
Q 004310 120 EVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS--SDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVT 196 (762)
Q Consensus 120 ~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~--~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~ 196 (762)
.....+|||||+|||||++..|...+...++...+. ..+.+.. .....+.|.||+||+++++|++||+. +.|+|+
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~ 92 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDS--CSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILR 92 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHH
T ss_pred cccCCCCCEEEEEECCCCChhhhccCCCceEEecCC--CeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHH
Confidence 456789999999999999999876655555543222 2233322 22345789999999999999999986 899999
Q ss_pred hhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhcc---CCceeEEEEEEEEEEEccccccccccCCC
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR---NGIMRYELFVSMLEVYNEKIRDLLVENSN 273 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~---~~~~~~~V~vS~lEIYNE~I~DLL~~~s~ 273 (762)
++++|||+||||||||||||||||+|+++++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~-- 170 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA-- 170 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS--
T ss_pred HhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccC--
Confidence 999999999999999999999999999999999999999999988653 345899999999999999999999754
Q ss_pred CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccC-CceEEE
Q 004310 274 QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLIN-GQKTKS 352 (762)
Q Consensus 274 ~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~-g~~~~S 352 (762)
...+.|++++.+| ++|.||+++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+... .....|
T Consensus 171 --~~~l~ired~~~~-v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~s 247 (388)
T 3bfn_A 171 --SGDLVIREDCRGN-ILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREG 247 (388)
T ss_dssp --SCBCCCEECTTSC-EECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEE
T ss_pred --CCCceEEEcCCCC-EEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEE
Confidence 3468899998855 679999999999999999999999999999999999999999999999999876543 345789
Q ss_pred EEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCC
Q 004310 353 HLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPS 432 (762)
Q Consensus 353 kL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~ 432 (762)
+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+|||||||+
T Consensus 248 kL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~ 327 (388)
T 3bfn_A 248 KLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPE 327 (388)
T ss_dssp EEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCS
T ss_pred EEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhhHHHHHHHhHhhccccCCCcccc
Q 004310 433 SSDLGETLCSLNFASRVRGIESGPARKQS 461 (762)
Q Consensus 433 ~~~~~ETLsTLrFAsrak~I~~~p~~~~~ 461 (762)
..+++||++||+||+||+.|++.|..+..
T Consensus 328 ~~~~~ETlsTLrfA~rak~I~n~p~~n~~ 356 (388)
T 3bfn_A 328 RRFYLDTVSALNFAARSKEVINRPFTNES 356 (388)
T ss_dssp GGGHHHHHHHHHHHCSEEEEC--------
T ss_pred cccHHHHHHHHHHHHHHhhCcCcCcccCC
Confidence 99999999999999999999999987653
No 11
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=7.5e-89 Score=742.57 Aligned_cols=330 Identities=41% Similarity=0.666 Sum_probs=304.9
Q ss_pred cCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCc
Q 004310 124 LKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGY 202 (762)
Q Consensus 124 lkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGy 202 (762)
-.|||||+|||||++..|...+...++.+++.. .+.+ ......+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~--~~~~-~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 80 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPD--TCTV-DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGY 80 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTT--EEEE-CSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTC
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCC--eEEE-ccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999988888888887653 3333 334457899999999999999999996 799999999999
Q ss_pred ceeEEeeccCCCCCccccCCC----CCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcc
Q 004310 203 NVCIFAYGQTGTGKTFTMEGT----PENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~G~----~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~ 278 (762)
|+||||||||||||||||+|+ ++++|||||++++||..+......+.|.|+|||+|||||+|+|||++. ...
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~----~~~ 156 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ----NDN 156 (355)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTT----CCS
T ss_pred cceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCc----cCC
Confidence 999999999999999999996 467899999999999998887778999999999999999999999764 346
Q ss_pred ceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEe
Q 004310 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVD 358 (762)
Q Consensus 279 l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVD 358 (762)
+.|++++.+| ++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+|||
T Consensus 157 l~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 235 (355)
T 1goj_A 157 LPVHEEKNRG-VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD 235 (355)
T ss_dssp CCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred ceeEEcCCCC-EeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEE
Confidence 8899998844 679999999999999999999999999999999999999999999999999988888888899999999
Q ss_pred ccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChH
Q 004310 359 LAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK-SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLG 437 (762)
Q Consensus 359 LAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ 437 (762)
||||||++++++.|++++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 236 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ 315 (355)
T 1goj_A 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315 (355)
T ss_dssp CCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHH
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhccccCCCcccc
Q 004310 438 ETLCSLNFASRVRGIESGPARKQS 461 (762)
Q Consensus 438 ETLsTLrFAsrak~I~~~p~~~~~ 461 (762)
||++||+||+||+.|++.|..+..
T Consensus 316 ETl~TL~fA~rak~I~n~~~vn~~ 339 (355)
T 1goj_A 316 ETLSTLRFGMRAKSIKNKAKVNAE 339 (355)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCSS
T ss_pred HHHHHHHHHHHHhhccCCceeCCC
Confidence 999999999999999999987754
No 12
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.6e-89 Score=745.32 Aligned_cols=328 Identities=39% Similarity=0.593 Sum_probs=260.1
Q ss_pred HHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee--------------------CCCCceeeecCe
Q 004310 117 LYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS--------------------SDSSKKQFKFDY 176 (762)
Q Consensus 117 l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~--------------------~~~~~k~F~FD~ 176 (762)
+++..+|++|||||+|||||++..|...+...++.+.+.. .+.+.. .....+.|.||+
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 78 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKH--ILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDA 78 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECSSS--EEEEC------------------------CCEEEECSE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCc--eEEecCCCCcceeecccccccccchhccCCCceEEece
Confidence 5778899999999999999999999988887777665431 111100 012346899999
Q ss_pred eeCCCCChhHHHhc-cchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEE
Q 004310 177 VFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVS 255 (762)
Q Consensus 177 VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS 255 (762)
||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++.......|.|.||
T Consensus 79 vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS 158 (355)
T 3lre_A 79 VFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVS 158 (355)
T ss_dssp EECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred EECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEE
Confidence 99999999999998 58999999999999999999999999999999999999999999999999988777789999999
Q ss_pred EEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEE
Q 004310 256 MLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLL 335 (762)
Q Consensus 256 ~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If 335 (762)
|+|||||+|+|||.+. ..+.+++++.+| ++|.||+++.|.|++|++.+|..|.++|++++|.+|+.|||||+||
T Consensus 159 ~~EIYnE~i~DLL~~~-----~~l~ire~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if 232 (355)
T 3lre_A 159 YLEVYNEQIRDLLVNS-----GPLAVREDTQKG-VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVF 232 (355)
T ss_dssp EEEEETTEEEESSSCC-----CCBEEEECTTSC-EEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEE
T ss_pred EEEEECCEEEECcCCC-----CCceeEEcCCCC-EEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEE
Confidence 9999999999999643 468999999865 5699999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeccC---CceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC---CCCccCCCCch
Q 004310 336 RVSVKGENLIN---GQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK---SGHIPYRNSKL 409 (762)
Q Consensus 336 ~I~V~~~~~~~---g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k---~~hIPYRdSKL 409 (762)
+|+|.+.+... +....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.||+++ ..|||||||||
T Consensus 233 ~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkL 312 (355)
T 3lre_A 233 QIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312 (355)
T ss_dssp EEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHH
T ss_pred EEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHH
Confidence 99999876532 3346799999999999999999999999999999999999999999999874 35999999999
Q ss_pred hhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 410 THILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 410 T~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
|+||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 313 T~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 313 TRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999986
No 13
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=5.4e-89 Score=762.05 Aligned_cols=339 Identities=38% Similarity=0.588 Sum_probs=282.7
Q ss_pred HhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC---------------CCCceeeecCeeeCC----
Q 004310 120 EVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS---------------DSSKKQFKFDYVFKP---- 180 (762)
Q Consensus 120 ~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~---------------~~~~k~F~FD~VF~~---- 180 (762)
...+++|||||+|||||+++.|...+..+++.+++... .+.+... ....+.|.||+||++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~ 110 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATE-RTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTE 110 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSC-EEEECCCC---------------CCCEEEECSEEEEESCTT
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCc-cEEEecCCCcccccccccccccccCCceEecCeEeCCCCcC
Confidence 35789999999999999999998888888888876532 2222211 013578999999976
Q ss_pred ---CCChhHHHhc-cchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhcc---CCceeEEEE
Q 004310 181 ---EDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR---NGIMRYELF 253 (762)
Q Consensus 181 ---~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~---~~~~~~~V~ 253 (762)
.++|++||+. +.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..+... ...+.|.|+
T Consensus 111 ~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~ 190 (443)
T 2owm_A 111 DEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVK 190 (443)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEE
T ss_pred CccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEE
Confidence 4899999998 589999999999999999999999999999999999999999999999988754 346899999
Q ss_pred EEEEEEEccccccccccCCC-CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCce
Q 004310 254 VSMLEVYNEKIRDLLVENSN-QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSH 332 (762)
Q Consensus 254 vS~lEIYNE~I~DLL~~~s~-~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH 332 (762)
|||+|||||+|+|||++... .....+.|++++.+| ++|.||+++.|.+++|++++|..|.++|++++|.||+.|||||
T Consensus 191 vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g-~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 269 (443)
T 2owm_A 191 VSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEG-PYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269 (443)
T ss_dssp EEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTE-EEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEE
T ss_pred EEEEEEECCEeeEccCccccCCcccccceeECCCCC-EeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCe
Confidence 99999999999999987422 234579999998855 6799999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeecc----CCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC---------
Q 004310 333 CLLRVSVKGENLI----NGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS--------- 399 (762)
Q Consensus 333 ~If~I~V~~~~~~----~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~--------- 399 (762)
+||+|+|.+.... ......|+|+|||||||||++++++.|+|++|+.+||+||++||+||.||+++.
T Consensus 270 ~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~ 349 (443)
T 2owm_A 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349 (443)
T ss_dssp EEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999875431 234567999999999999999999999999999999999999999999998643
Q ss_pred -------------CCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCccccc
Q 004310 400 -------------GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSD 462 (762)
Q Consensus 400 -------------~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~~ 462 (762)
.||||||||||+||||+|||||+|+|||||||+ +++||++||+||+||++|++.|..|+.+
T Consensus 350 ~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d 423 (443)
T 2owm_A 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVD 423 (443)
T ss_dssp --------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC-
T ss_pred cccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccC
Confidence 389999999999999999999999999999997 5999999999999999999999988754
No 14
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=6.6e-89 Score=746.04 Aligned_cols=338 Identities=41% Similarity=0.620 Sum_probs=286.9
Q ss_pred HHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC----CCceeeecCeeeCCCCChhHHHhc-cch
Q 004310 119 NEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD----SSKKQFKFDYVFKPEDNQEAVFAQ-TKP 193 (762)
Q Consensus 119 N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~----~~~k~F~FD~VF~~~~tQ~eVf~~-~~p 193 (762)
+..++.+|||||+|||||++..|...+...++.++.. ...+.+.... ...+.|.||+||+++++|++||+. ++|
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~-~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~p 92 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVK-LGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRP 92 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETT-TTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCC-CCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHH
Confidence 4567889999999999999999988888888877654 3345554432 346799999999999999999998 699
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccCCCC---CCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEcccccccccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP---ENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVE 270 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~ 270 (762)
+|+++++|||+||||||||||||||||+|.. +++|||||++++||..+... ..+.|.|+|||+|||||+|+|||++
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTC-SSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhc-cCCceEEEEEEEEEeCCEEEECCCC
Confidence 9999999999999999999999999999964 45799999999999988763 4579999999999999999999976
Q ss_pred CCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc---CC
Q 004310 271 NSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI---NG 347 (762)
Q Consensus 271 ~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~---~g 347 (762)
.. ...+.|++++.+| ++|.||+++.|.|++|++++|..|.++|++++|.+|+.|||||+||+|+|...+.. .+
T Consensus 172 ~~---~~~l~i~e~~~~~-v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 247 (372)
T 3b6u_A 172 DQ---TKRLELKERPDTG-VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGEN 247 (372)
T ss_dssp CT---TCCBCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CC
T ss_pred CC---CCCceEEECCCCc-EecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCc
Confidence 42 3578999998854 67999999999999999999999999999999999999999999999999876532 23
Q ss_pred ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC-CCccCCCCchhhhcccccCCCceeeEE
Q 004310 348 QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS-GHIPYRNSKLTHILQSSLGGDCKTLMF 426 (762)
Q Consensus 348 ~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLgGnskT~mI 426 (762)
....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.||+++. .||||||||||+||||+|||||+|+||
T Consensus 248 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 327 (372)
T 3b6u_A 248 HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMV 327 (372)
T ss_dssp CEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEE
T ss_pred ceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEE
Confidence 4678999999999999999999999999999999999999999999999864 699999999999999999999999999
Q ss_pred EecCCCCCChHhhHHHHHHHhHhhccccCCCccccc
Q 004310 427 VQISPSSSDLGETLCSLNFASRVRGIESGPARKQSD 462 (762)
Q Consensus 427 ~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~~ 462 (762)
|||||+..+++||++||+||+||++|++.|..++..
T Consensus 328 a~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~ 363 (372)
T 3b6u_A 328 ANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP 363 (372)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--
T ss_pred EEeCCcccCHHHHHHHHHHHHHHhhccccceecCCh
Confidence 999999999999999999999999999999887643
No 15
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4e-89 Score=745.97 Aligned_cols=335 Identities=41% Similarity=0.620 Sum_probs=279.5
Q ss_pred hhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC----CCCceeeecCeeeCCCCChhHHHhc-cchhhh
Q 004310 122 IELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS----DSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVT 196 (762)
Q Consensus 122 ~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~----~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~ 196 (762)
.+.+|||||+|||||++..|...+...++.+++.. ..+.+... ....+.|.||+||+++++|++||+. +.|+|+
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 82 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVR-KEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILD 82 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTT-TEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCC-cEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHH
Confidence 35679999999999999999888888888777653 33443321 1235789999999999999999998 589999
Q ss_pred hhccCcceeEEeeccCCCCCccccCCCCC-----------CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccc
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTMEGTPE-----------NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIR 265 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM~G~~~-----------~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~ 265 (762)
++++|||+||||||||||||||||+|+.. .+|||||++++||+.+.. ..+.|.|+|||+|||||+|+
T Consensus 83 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~ 160 (359)
T 1x88_A 83 EVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELF 160 (359)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEE
T ss_pred HHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceee
Confidence 99999999999999999999999999754 369999999999998865 35799999999999999999
Q ss_pred cccccCCCCCCccceeeeccC-CCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeec
Q 004310 266 DLLVENSNQPSKKLEIKQAAE-GGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENL 344 (762)
Q Consensus 266 DLL~~~s~~~~~~l~Ir~~~~-~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~ 344 (762)
|||.+... ....+.+++++. .+.++|.||+++.|.|++|++++|..|.++|++++|.||++|||||+||+|+|.....
T Consensus 161 DLL~~~~~-~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~ 239 (359)
T 1x88_A 161 DLLNPSSD-VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239 (359)
T ss_dssp ETTCTTSC-TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEE
T ss_pred ehhccccc-ccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecc
Confidence 99987542 245788998874 3557899999999999999999999999999999999999999999999999987653
Q ss_pred c-CC--ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCc
Q 004310 345 I-NG--QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDC 421 (762)
Q Consensus 345 ~-~g--~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGns 421 (762)
. .+ ....|+|+|||||||||++++++.|+|++|+++||+||++||+||.||+++..||||||||||+||||+|||||
T Consensus 240 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns 319 (359)
T 1x88_A 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRT 319 (359)
T ss_dssp CTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSS
T ss_pred cCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCC
Confidence 2 23 24579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCccc
Q 004310 422 KTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460 (762)
Q Consensus 422 kT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~ 460 (762)
+|+|||||||+..+++||++||+||+||++|++.|..|+
T Consensus 320 kt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 320 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred eEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999998764
No 16
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=3.4e-89 Score=737.53 Aligned_cols=318 Identities=43% Similarity=0.644 Sum_probs=294.5
Q ss_pred hcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccC
Q 004310 123 ELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDG 201 (762)
Q Consensus 123 elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldG 201 (762)
..+|||||+|||||++..|...+...++.+++. ..+.+ ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~~-----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 76 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGE--DTVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEG 76 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETT--TEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCC--CeEEE-----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCC
Confidence 457999999999999999988777777777654 23333 24789999999999999999998 68999999999
Q ss_pred cceeEEeeccCCCCCccccCCCCC---CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcc
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTPE---NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~ 278 (762)
||+||||||||||||||||+|+.. ++|||||++++||+.+......+.|.|+|||+|||||+|+|||.+. ...
T Consensus 77 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~----~~~ 152 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS----KTN 152 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT----CCS
T ss_pred CeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC----CCC
Confidence 999999999999999999999754 4699999999999999877777899999999999999999999653 357
Q ss_pred ceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEe
Q 004310 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVD 358 (762)
Q Consensus 279 l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVD 358 (762)
+.+++++.++ ++|.|++++.|.|++|++++|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+|||
T Consensus 153 l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVD 231 (325)
T 1bg2_A 153 LSVHEDKNRV-PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD 231 (325)
T ss_dssp BCEEECTTSC-EEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred ceEEECCCCC-EEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEE
Confidence 8999998855 579999999999999999999999999999999999999999999999999988877888899999999
Q ss_pred ccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 359 LAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 359 LAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
||||||.+++++.|.+++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+||||+..+++|
T Consensus 232 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~E 311 (325)
T 1bg2_A 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESE 311 (325)
T ss_dssp CCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhcc
Q 004310 439 TLCSLNFASRVRGI 452 (762)
Q Consensus 439 TLsTLrFAsrak~I 452 (762)
|++||+||+|||+|
T Consensus 312 Tl~TL~fa~rak~I 325 (325)
T 1bg2_A 312 TKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999987
No 17
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-88 Score=735.06 Aligned_cols=328 Identities=39% Similarity=0.590 Sum_probs=286.3
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcc
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYN 203 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN 203 (762)
.|+|||+|||||++..|...+...++.++... ..+.. ....+.|.||+||+++++|++||+. +.|+|+++++|||
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~i~~---~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n 78 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDN-NVIYQ---VDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 78 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEET-TEEEE---TTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCC-CeEEE---CCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 69999999999999999877765554443322 22221 1245799999999999999999998 5899999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCccceeee
Q 004310 204 VCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQ 283 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~ 283 (762)
+||||||||||||||||+|+++++|||||++++||+.++... ...|.|+|||+|||||+|+|||++.. ..+.+.|++
T Consensus 79 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~--~~~~l~i~e 155 (349)
T 1t5c_A 79 GTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFP-DREFLLRVSYMEIYNETITDLLCGTQ--KMKPLIIRE 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCT-TEEEEEEEEEEEEETTEEEESSSSSC--TTCCEEEEE
T ss_pred cceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCc-CCcEEEEEEEEEEeCCEEEEccCCCC--CCCCceEEE
Confidence 999999999999999999999999999999999999987654 47899999999999999999997643 345789999
Q ss_pred ccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc-----CCceEEEEEEEEe
Q 004310 284 AAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI-----NGQKTKSHLWLVD 358 (762)
Q Consensus 284 ~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~-----~g~~~~SkL~LVD 358 (762)
++.+ .++|.|++++.|.+++|++++|..|.++|++++|.+|+.|||||+||+|.|.+.+.. .+....|+|+|||
T Consensus 156 d~~~-~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVD 234 (349)
T 1t5c_A 156 DVNR-NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234 (349)
T ss_dssp TTTT-EEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEE
T ss_pred CCCC-CEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEE
Confidence 9884 567999999999999999999999999999999999999999999999999887643 2356789999999
Q ss_pred ccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCC--CCccCCCCchhhhcccccCCCceeeEEEecCCCCCCh
Q 004310 359 LAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKS--GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDL 436 (762)
Q Consensus 359 LAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~ 436 (762)
||||||.+++++.|.|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+|||||||. ++
T Consensus 235 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~ 312 (349)
T 1t5c_A 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SF 312 (349)
T ss_dssp CCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CS
T ss_pred CCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CH
Confidence 99999999999999999999999999999999999999865 699999999999999999999999999999997 58
Q ss_pred HhhHHHHHHHhHhhccccCCCccccc
Q 004310 437 GETLCSLNFASRVRGIESGPARKQSD 462 (762)
Q Consensus 437 ~ETLsTLrFAsrak~I~~~p~~~~~~ 462 (762)
+||++||+||+||+.|++.|..|...
T Consensus 313 ~ETlsTL~fA~rak~I~n~~~vn~~~ 338 (349)
T 1t5c_A 313 DETLTALQFASTAKYMKNTPYVNEVS 338 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred HHHHHHHHHHHHHhhcccCceeccCC
Confidence 99999999999999999999887643
No 18
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.5e-88 Score=747.10 Aligned_cols=347 Identities=32% Similarity=0.479 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC----C----C
Q 004310 97 SNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD----S----S 168 (762)
Q Consensus 97 ~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~----~----~ 168 (762)
.-++..|-++|+.+...|+..||+..+ .+||+|+|||||++..|...+...++.+++.. .+.+.... . .
T Consensus 43 ~~~~~~~i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~--~v~v~~~~~~~~~~~~~~ 119 (410)
T 1v8k_A 43 NWEFARMIKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPSKC--LLLVHEPKLKVDLTKYLE 119 (410)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCSSS--EEEEEEEEECTTCCEEEE
T ss_pred cHHHHHHHHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECCCC--EEEEecCccccccccccc
Confidence 456667777899999999999999887 89999999999999999888888888876542 33332111 1 2
Q ss_pred ceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcceeEEeeccCCCCCccccCCCC------CCCCchhhhHHHHHHHh
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP------ENRGVNYRTLEELFRVS 241 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~ 241 (762)
.+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+. .++|||||++++||..+
T Consensus 120 ~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~ 199 (410)
T 1v8k_A 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLK 199 (410)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHH
T ss_pred ceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHH
Confidence 4689999999999999999998 6999999999999999999999999999999963 46899999999999987
Q ss_pred hccC-CceeEEEEEEEEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhccccc
Q 004310 242 KHRN-GIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVG 320 (762)
Q Consensus 242 ~~~~-~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~ 320 (762)
.... ..+.|.|+|||+|||||+|+|||.+. .++.|++++.+| ++|.||+++.|.|++|++.+|..|.++|+++
T Consensus 200 ~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~-----~~l~i~ed~~~~-v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~ 273 (410)
T 1v8k_A 200 NQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK-----AKLRVLEDSRQQ-VQVVGLQEYLVTCADDVIKMINMGSACRTSG 273 (410)
T ss_dssp TSHHHHTTCCEEEEEEEEEETTEEEETTTTT-----EEEEEEECSSCC-EEEETCCCEEESSHHHHHHHHHHHHHTCC--
T ss_pred hhhcccCccEEEEEEEEEeeCCEEEECCCCC-----CCceEEECCCCC-eEecCCEEEEeCCHHHHHHHHHHHHhhCCcc
Confidence 6432 34689999999999999999999643 478999998855 6799999999999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccccccc-cchhhhHHHHHHhhhHHHHHHHHHHHhcCC
Q 004310 321 STNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIE-VDGERLKESQFINKSLSALGDVISALASKS 399 (762)
Q Consensus 321 sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~~kt~-~~g~rlkEa~~INkSLsaLg~VI~ALa~k~ 399 (762)
+|.+|+.|||||+||+|.|.+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+.+.
T Consensus 274 ~T~~N~~SSRSH~Ifti~v~~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~ 348 (410)
T 1v8k_A 274 QTFANSNSSRSHACFQILLRTKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 348 (410)
T ss_dssp ------CCCSSEEEEEEEEESSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC--
T ss_pred cccCCCCCCCceEEEEEEEEeCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998652 468999999999999998876 467889999999999999999999999999
Q ss_pred CCccCCCCchhhhcccc-cCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCC
Q 004310 400 GHIPYRNSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPA 457 (762)
Q Consensus 400 ~hIPYRdSKLT~LLqds-LgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~ 457 (762)
.||||||||||+||||+ |||||+|+|||||||+..+++||++||+||+||+.|...|.
T Consensus 349 ~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 349 AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp ----CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999 69999999999999999999999999999999999987664
No 19
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-88 Score=744.69 Aligned_cols=334 Identities=39% Similarity=0.595 Sum_probs=278.7
Q ss_pred hhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee--CCCCceeeecCeeeCCCCChhHHHhc-cchhhhh
Q 004310 121 VIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS--SDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTS 197 (762)
Q Consensus 121 l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~--~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~s 197 (762)
-.+.++||||||||||++..|...+...++.+++.. .+.+.. .....+.|.||+||+++++|++||+. +.|+|++
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~ 95 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPR--EVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEE 95 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTT--EEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCC--eEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHH
Confidence 346789999999999999999876777777776542 333322 22346899999999999999999998 7999999
Q ss_pred hccCcceeEEeeccCCCCCccccCCCCC-----------CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEcccccc
Q 004310 198 VLDGYNVCIFAYGQTGTGKTFTMEGTPE-----------NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRD 266 (762)
Q Consensus 198 vldGyN~~IfAYGqTGSGKTyTM~G~~~-----------~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~D 266 (762)
+++|||+||||||||||||||||+|+.. ++|||||++++||+.+.... +.|.|+|||+|||||+|+|
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~--~~~~v~vS~~EIYnE~i~D 173 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMME--VEYTMRISYLELYNEELCD 173 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCC--SCEEEEEEEEEEETTEEEE
T ss_pred HhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcC--ceEEEEEEEEEEeCCeEEE
Confidence 9999999999999999999999999754 68999999999999887543 5899999999999999999
Q ss_pred ccccCCCCCCccceeeeccC-CCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc
Q 004310 267 LLVENSNQPSKKLEIKQAAE-GGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI 345 (762)
Q Consensus 267 LL~~~s~~~~~~l~Ir~~~~-~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~ 345 (762)
||.+.. ..++.++++.. .|.++|.||+++.|.+++|++++|..|.++|++++|.+|+.|||||+||+|.|......
T Consensus 174 LL~~~~---~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 250 (373)
T 2wbe_C 174 LLSTDD---TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG 250 (373)
T ss_dssp SSCTTS---CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTC
T ss_pred CCCCCC---CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCC
Confidence 997642 34677888753 46678999999999999999999999999999999999999999999999999875422
Q ss_pred -C--CceEEEEEEEEeccCcccccccccc-hhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCc
Q 004310 346 -N--GQKTKSHLWLVDLAGSERVGKIEVD-GERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDC 421 (762)
Q Consensus 346 -~--g~~~~SkL~LVDLAGSER~~kt~~~-g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGns 421 (762)
. .....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||
T Consensus 251 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns 330 (373)
T 2wbe_C 251 IEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRT 330 (373)
T ss_dssp TTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSS
T ss_pred CCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCc
Confidence 2 2346799999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCcccc
Q 004310 422 KTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQS 461 (762)
Q Consensus 422 kT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~~ 461 (762)
+|+|||||||+..+++||++||+||+||++|++.|..|+.
T Consensus 331 kt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 331 KTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence 9999999999999999999999999999999999987753
No 20
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=7.5e-88 Score=737.60 Aligned_cols=328 Identities=37% Similarity=0.602 Sum_probs=278.2
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC---CCceeeecCeeeCCC--------CChhHHHhc-cc
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD---SSKKQFKFDYVFKPE--------DNQEAVFAQ-TK 192 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~---~~~k~F~FD~VF~~~--------~tQ~eVf~~-~~ 192 (762)
.++|||+|||||++..|...+..+++.+++. .+.+.... ...+.|.||+||+++ ++|++||+. +.
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~---~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~ 79 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGS---TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE 79 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETT---EEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCC---cEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence 4799999999999999988888888877654 33443322 246789999999987 899999998 58
Q ss_pred hhhhhhccCcceeEEeeccCCCCCccccCCCC--CCCCchhhhHHHHHHHhhccC-CceeEEEEEEEEEEEccccccccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP--ENRGVNYRTLEELFRVSKHRN-GIMRYELFVSMLEVYNEKIRDLLV 269 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM~G~~--~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEIYNE~I~DLL~ 269 (762)
|+|+++++|||+||||||||||||||||+|+. +++|||||++++||..++... ..+.|.|+|||+|||||+|+|||.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~ 159 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 159 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccc
Confidence 99999999999999999999999999999984 578999999999999887653 468999999999999999999997
Q ss_pred cCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCC--
Q 004310 270 ENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLING-- 347 (762)
Q Consensus 270 ~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g-- 347 (762)
+.. ...+.|++++.+| ++|.||+++.|.|++|++++|..|.++|++++|.+|+.|||||+||+|+|.+......
T Consensus 160 ~~~---~~~l~ire~~~~g-~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 235 (366)
T 2zfi_A 160 PKN---KGNLRVREHPLLG-PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235 (366)
T ss_dssp TTT---CSCBCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTT
T ss_pred ccc---CCCceEEEcCCCC-EEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCC
Confidence 643 3468999998855 6799999999999999999999999999999999999999999999999987654322
Q ss_pred --ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc------------CCCCccCCCCchhhhc
Q 004310 348 --QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS------------KSGHIPYRNSKLTHIL 413 (762)
Q Consensus 348 --~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~------------k~~hIPYRdSKLT~LL 413 (762)
....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||++ +..||||||||||+||
T Consensus 236 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lL 315 (366)
T 2zfi_A 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLL 315 (366)
T ss_dssp CEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHT
T ss_pred ccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHH
Confidence 24579999999999999999999999999999999999999999999986 3579999999999999
Q ss_pred ccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCcc
Q 004310 414 QSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARK 459 (762)
Q Consensus 414 qdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~ 459 (762)
||+|||||+|+|||||||+..+++||++||+||+||++|++.|..+
T Consensus 316 qdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 316 RENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp GGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred HHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 9999999999999999999999999999999999999999998754
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=6.5e-88 Score=740.69 Aligned_cols=345 Identities=32% Similarity=0.494 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC----C----C
Q 004310 97 SNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD----S----S 168 (762)
Q Consensus 97 ~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~----~----~ 168 (762)
.-++..|.++|+.+...|+.++|+..+ ++||||+|||||++..|...+...++.+++.. .+.+.... . .
T Consensus 23 ~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~--~~~v~~~~~~~~~~~~~~ 99 (387)
T 2heh_A 23 NWEFARMIKEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPSKC--LLLVHEPKLKVDLTKYLE 99 (387)
T ss_dssp CHHHHHHHHHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCBSS--EEEEEEEEECTTCCEEEE
T ss_pred CHhHHHHHHHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECCCC--EEEEeCCCcccccccccc
Confidence 456677778899999999999999888 99999999999999999888887788776542 33322111 1 2
Q ss_pred ceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcceeEEeeccCCCCCccccCCC------CCCCCchhhhHHHHHHHh
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGT------PENRGVNYRTLEELFRVS 241 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~------~~~~GIipRal~~LF~~~ 241 (762)
.+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ..++||+||++++||..+
T Consensus 100 ~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~ 179 (387)
T 2heh_A 100 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLK 179 (387)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHH
T ss_pred ccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHh
Confidence 4689999999999999999998 699999999999999999999999999999996 356899999999999987
Q ss_pred hccC-CceeEEEEEEEEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhccccc
Q 004310 242 KHRN-GIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVG 320 (762)
Q Consensus 242 ~~~~-~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~ 320 (762)
+... ..+.|.|+|||+|||||+|+|||.+. .++.|++++.+| ++|.||+++.|.|++|++++|..|.++|+++
T Consensus 180 ~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~-----~~l~i~ed~~~~-v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~ 253 (387)
T 2heh_A 180 NQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK-----AKLRVLEDGKQQ-VQVVGLQEHLVNSADDVIKMIDMGSACRTSG 253 (387)
T ss_dssp TSHHHHTTTCEEEEEEEEEETTEEEETTTTT-----EECEEEECTTCC-EEEETCCCEEESSHHHHHHHHHHHHHHC---
T ss_pred hcccccCceEEEEEEEEEecCCeEEECCCCC-----ccceEEEcCCCC-EEecCCEEEEeCCHHHHHHHHHHHHhhCCcc
Confidence 6432 34679999999999999999999653 478999998855 6799999999999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccccccc-cchhhhHHHHHHhhhHHHHHHHHHHHhcCC
Q 004310 321 STNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIE-VDGERLKESQFINKSLSALGDVISALASKS 399 (762)
Q Consensus 321 sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~~kt~-~~g~rlkEa~~INkSLsaLg~VI~ALa~k~ 399 (762)
+|.+|+.|||||+||+|.|.+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++.
T Consensus 254 ~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~ 328 (387)
T 2heh_A 254 QTFANSNSSRSHACFQIILRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 328 (387)
T ss_dssp ------CGGGSEEEEEEEEESS-----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcCcCCcccceEEEEEEEEEC-----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999865 2468999999999999998875 467889999999999999999999999999
Q ss_pred CCccCCCCchhhhcccc-cCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccC
Q 004310 400 GHIPYRNSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESG 455 (762)
Q Consensus 400 ~hIPYRdSKLT~LLqds-LgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~ 455 (762)
.||||||||||+||||+ |||||+|+|||||||+..+++||++||+||+||++|+..
T Consensus 329 ~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 329 AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999 699999999999999999999999999999999999764
No 22
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.1e-86 Score=723.30 Aligned_cols=317 Identities=41% Similarity=0.663 Sum_probs=264.9
Q ss_pred CCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccCcc
Q 004310 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDGYN 203 (762)
Q Consensus 125 kGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldGyN 203 (762)
.++|||+|||||++..|...+...++.+++.. ..+.+ +..+.|.||+||+++++|++||+. +.|+|+++++|||
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~~~~----~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n 84 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGL-GRVTL----GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFN 84 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGG-TEEEE----TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCC
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCC-ceEEe----cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999888877777765542 22322 346899999999999999999998 7999999999999
Q ss_pred eeEEeeccCCCCCccccCCC------CCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCc
Q 004310 204 VCIFAYGQTGTGKTFTMEGT------PENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSK 277 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G~------~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~ 277 (762)
+||||||||||||||||+|+ .+++|||||++++||+.++... .++|.|+|||+|||||+|+|||.+.. ..+
T Consensus 85 ~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~--~~~ 161 (344)
T 4a14_A 85 ATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGT--ASR 161 (344)
T ss_dssp EEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCT-TSEEEEEEEEEEEETTEEEETTSSCC--CGG
T ss_pred eeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhccccc-ceeeEEEEehhhhhHHHHHHHHHhcc--ccc
Confidence 99999999999999999997 4689999999999999988654 47999999999999999999997542 346
Q ss_pred cceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc--------CCce
Q 004310 278 KLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI--------NGQK 349 (762)
Q Consensus 278 ~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~--------~g~~ 349 (762)
.+.|++++.++ ++|.|++++.|.+++|++++|..|.++|++++|.+|+.|||||+||+|+|.+.+.. .+..
T Consensus 162 ~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~ 240 (344)
T 4a14_A 162 DIQLREDERGN-VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQL 240 (344)
T ss_dssp GCEEEECTTSC-EEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CE
T ss_pred cceeeeccCCC-EEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccce
Confidence 79999998855 67999999999999999999999999999999999999999999999999876532 2455
Q ss_pred EEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC---CCCccCCCCchhhhcccccCCCceeeEE
Q 004310 350 TKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK---SGHIPYRNSKLTHILQSSLGGDCKTLMF 426 (762)
Q Consensus 350 ~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k---~~hIPYRdSKLT~LLqdsLgGnskT~mI 426 (762)
..|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||
T Consensus 241 ~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 320 (344)
T 4a14_A 241 LVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMI 320 (344)
T ss_dssp EEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEE
T ss_pred eeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEE
Confidence 7899999999999999999999999999999999999999999999864 4699999999999999999999999999
Q ss_pred EecCCCCCChHhhHHHHHHHhHhh
Q 004310 427 VQISPSSSDLGETLCSLNFASRVR 450 (762)
Q Consensus 427 ~~ISP~~~~~~ETLsTLrFAsrak 450 (762)
+||||+..+++||++||+||+|||
T Consensus 321 ~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 321 ACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999986
No 23
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-87 Score=729.72 Aligned_cols=321 Identities=36% Similarity=0.594 Sum_probs=254.4
Q ss_pred hhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee----------CCCCceeeecCeeeCCCCChhHHHhc-
Q 004310 122 IELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS----------SDSSKKQFKFDYVFKPEDNQEAVFAQ- 190 (762)
Q Consensus 122 ~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~----------~~~~~k~F~FD~VF~~~~tQ~eVf~~- 190 (762)
.+.+|||||||||||++..|.. ++.+..+ ...+.+.. .....+.|.||+||+ +++|++||+.
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~ 92 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE-----MIRYGDD-KRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETV 92 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT-----TEEECTT-SSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHH
T ss_pred CCCCCCEEEEEEcCCCCccccc-----ceeecCC-CcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHH
Confidence 3568999999999999876542 1222221 12222221 223457899999997 5899999998
Q ss_pred cchhhhhhccCcceeEEeeccCCCCCccccCCCCC---CCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccc
Q 004310 191 TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPE---NRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDL 267 (762)
Q Consensus 191 ~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DL 267 (762)
++|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+..... +.|.|+|||+|||||+|+||
T Consensus 93 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~-~~~~v~vS~~EIYnE~i~DL 171 (359)
T 3nwn_A 93 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPT-HAITVRVSYLEIYNESLFDL 171 (359)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTT-SCEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCC-CcEEEEEEEEEEeccccccc
Confidence 58999999999999999999999999999999754 489999999999998876544 78999999999999999999
Q ss_pred cccCCCC--CCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc
Q 004310 268 LVENSNQ--PSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI 345 (762)
Q Consensus 268 L~~~s~~--~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~ 345 (762)
|++.... ....+.+++++. | ++|.|++++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|+|......
T Consensus 172 L~~~~~~~~~~~~~~~~~~~~-g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~ 249 (359)
T 3nwn_A 172 LSTLPYVGPSVTPMTIVENPQ-G-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249 (359)
T ss_dssp TSSSTTSCTTTSCCEEEEETT-E-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---
T ss_pred cccccccccccccceEEecCC-c-eEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc
Confidence 9865432 234566777664 4 67999999999999999999999999999999999999999999999999875433
Q ss_pred --CCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc-CCCCccCCCCchhhhcccccCCCce
Q 004310 346 --NGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSGHIPYRNSKLTHILQSSLGGDCK 422 (762)
Q Consensus 346 --~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~-k~~hIPYRdSKLT~LLqdsLgGnsk 422 (762)
.+....|+|+|||||||||++++++.|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+|||||+
T Consensus 250 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnsk 329 (359)
T 3nwn_A 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329 (359)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred ccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCcc
Confidence 3455789999999999999999999999999999999999999999999997 4579999999999999999999999
Q ss_pred eeEEEecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 423 TLMFVQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 423 T~mI~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
|+|||||||+..+++||++||+||+|||.|
T Consensus 330 t~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 330 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987
No 24
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=6.1e-86 Score=719.68 Aligned_cols=320 Identities=38% Similarity=0.614 Sum_probs=259.5
Q ss_pred CCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee---------CCCCceeeecCeee--------CCCCChhHHH
Q 004310 126 GNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS---------SDSSKKQFKFDYVF--------KPEDNQEAVF 188 (762)
Q Consensus 126 GnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~---------~~~~~k~F~FD~VF--------~~~~tQ~eVf 188 (762)
.||+|+|||||++..|...+..+++.+++. .+.+.. .....+.|.||+|| ++.++|++||
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~---~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy 77 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDAN---KVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVF 77 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETT---EEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCC---eEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHH
Confidence 379999999999999988777778877654 222211 12346889999999 4567899999
Q ss_pred hc-cchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEcccccc
Q 004310 189 AQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRD 266 (762)
Q Consensus 189 ~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~D 266 (762)
+. +.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||..+.. ....+.|.|+|||+|||||+|+|
T Consensus 78 ~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 157 (354)
T 3gbj_A 78 KCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD 157 (354)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred HHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence 98 58999999999999999999999999999999999999999999999987763 34568999999999999999999
Q ss_pred ccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeecc-
Q 004310 267 LLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLI- 345 (762)
Q Consensus 267 LL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~- 345 (762)
||.+.. ....+.+++++.+| ++|.|++++.|.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+....
T Consensus 158 LL~~~~--~~~~l~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 234 (354)
T 3gbj_A 158 LLDPKG--SRQTLKVREHSVLG-PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV 234 (354)
T ss_dssp TTC--------CBCBC-------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT
T ss_pred ccCCCC--CCcceEEEEcCCCC-EEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc
Confidence 997643 23578899998866 56999999999999999999999999999999999999999999999999875322
Q ss_pred ---CCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhc------CCCCccCCCCchhhhcccc
Q 004310 346 ---NGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS------KSGHIPYRNSKLTHILQSS 416 (762)
Q Consensus 346 ---~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~------k~~hIPYRdSKLT~LLqds 416 (762)
......|+|+|||||||||..++++.|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+
T Consensus 235 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqds 314 (354)
T 3gbj_A 235 KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314 (354)
T ss_dssp TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHH
T ss_pred CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHH
Confidence 1234679999999999999999999999999999999999999999999985 4579999999999999999
Q ss_pred cCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhc
Q 004310 417 LGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRG 451 (762)
Q Consensus 417 LgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~ 451 (762)
|||||+|+|||||||+..+++||++||+||+||+.
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred hCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999985
No 25
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=9.9e-86 Score=718.88 Aligned_cols=327 Identities=29% Similarity=0.449 Sum_probs=275.5
Q ss_pred CEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC--------CCceeeecCeeeCCCCChhHHHhc-cchhhhh
Q 004310 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD--------SSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTS 197 (762)
Q Consensus 127 nIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~--------~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~s 197 (762)
||||+|||||++..|...+...++.+++.. .+.+.... ...+.|.||+||+++++|++||+. ++|+|++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~--~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 78 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNC--TLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIID 78 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETT--EEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCC--EEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhh
Confidence 799999999999999888877777776542 33332211 124689999999999999999997 7999999
Q ss_pred hcc-CcceeEEeeccCCCCCccccCCCC-----CCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccC
Q 004310 198 VLD-GYNVCIFAYGQTGTGKTFTMEGTP-----ENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVEN 271 (762)
Q Consensus 198 vld-GyN~~IfAYGqTGSGKTyTM~G~~-----~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~ 271 (762)
+++ |||+||||||||||||||||+|+. +++|||||++++||..++.....+.|.|+|||+|||||+|+|||.+.
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 158 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR 158 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred hccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC
Confidence 996 999999999999999999999974 67999999999999998876666789999999999999999999653
Q ss_pred CCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEE
Q 004310 272 SNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTK 351 (762)
Q Consensus 272 s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~ 351 (762)
..+.+++++.++ ++|.|++++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+ .....
T Consensus 159 -----~~~~~~e~~~~~-~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~ 229 (360)
T 1ry6_A 159 -----KMVAALENGKKE-VVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSL 229 (360)
T ss_dssp ---------------CC-BCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEE
T ss_pred -----ccceeeEcCCCC-EEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcce
Confidence 245677777645 579999999999999999999999999999999999999999999999998643 44678
Q ss_pred EEEEEEeccCcccccccccch-hhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecC
Q 004310 352 SHLWLVDLAGSERVGKIEVDG-ERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQIS 430 (762)
Q Consensus 352 SkL~LVDLAGSER~~kt~~~g-~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~IS 430 (762)
|+|+|||||||||..++++.| .+++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||||||
T Consensus 230 skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~is 309 (360)
T 1ry6_A 230 GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANIS 309 (360)
T ss_dssp EEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEEC
T ss_pred eEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeC
Confidence 999999999999999998876 5789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHhhHHHHHHHhHhhccccCCCccccchh
Q 004310 431 PSSSDLGETLCSLNFASRVRGIESGPARKQSDIS 464 (762)
Q Consensus 431 P~~~~~~ETLsTLrFAsrak~I~~~p~~~~~~~~ 464 (762)
|+..+++||++||+||+||++|++.|..+....+
T Consensus 310 P~~~~~~ETlsTLrfA~rak~i~n~~~~~~~~~n 343 (360)
T 1ry6_A 310 PTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPN 343 (360)
T ss_dssp CBGGGHHHHHHHHHHHHHHCC-------------
T ss_pred CCcccHHHHHHHHHHHHHHhhcccCcccCCCCcc
Confidence 9999999999999999999999998765544333
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1e-85 Score=718.40 Aligned_cols=324 Identities=36% Similarity=0.581 Sum_probs=258.4
Q ss_pred HHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeC----------CCCceeeecCeeeCCCCChhHHH
Q 004310 119 NEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSS----------DSSKKQFKFDYVFKPEDNQEAVF 188 (762)
Q Consensus 119 N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~----------~~~~k~F~FD~VF~~~~tQ~eVf 188 (762)
-.-.+++|||||||||||+...+ ..++.++.. ...+.+... ....+.|.||+||+ +++|++||
T Consensus 16 ~~~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~-~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy 88 (358)
T 2nr8_A 16 PRGSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDD-KRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVY 88 (358)
T ss_dssp -------CCEEEEEEECCCSSCC-----TTTEEECTT-SSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHH
T ss_pred cCCCCCCCCeEEEEEcCCCCCCc-----cceeEECCC-CCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHH
Confidence 34578999999999999986532 234555443 233433222 12356899999995 88999999
Q ss_pred hc-cchhhhhhccCcceeEEeeccCCCCCccccCCCCCC---CCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEcccc
Q 004310 189 AQ-TKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPEN---RGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKI 264 (762)
Q Consensus 189 ~~-~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~---~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I 264 (762)
+. +.|+|+++++|||+||||||||||||||||+|+.++ +|||||++++||+.++.... +.|.|+|||+|||||+|
T Consensus 89 ~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~-~~~~v~vS~~EIYnE~i 167 (358)
T 2nr8_A 89 ETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPT-HAITVRVSYLEIYNESL 167 (358)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTT-SCEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCC-ceEEEEEEEEEEeCCee
Confidence 98 589999999999999999999999999999998764 89999999999999886544 68999999999999999
Q ss_pred ccccccCCC--CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEee
Q 004310 265 RDLLVENSN--QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGE 342 (762)
Q Consensus 265 ~DLL~~~s~--~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~ 342 (762)
+|||++... .....+.|++++. | ++|+|++++.|.+.+|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.
T Consensus 168 ~DLL~~~~~~~~~~~~l~i~e~~~-g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~ 245 (358)
T 2nr8_A 168 FDLLSTLPYVGPSVTPMTIVENPQ-G-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 245 (358)
T ss_dssp EETTSSSTTSCTTTSCCEEEEETT-E-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC
T ss_pred eECcCCccccCccCCceEEEECCC-c-eEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEE
Confidence 999986432 2345788998883 5 67999999999999999999999999999999999999999999999999876
Q ss_pred ecc--CCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-CCCccCCCCchhhhcccccCC
Q 004310 343 NLI--NGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK-SGHIPYRNSKLTHILQSSLGG 419 (762)
Q Consensus 343 ~~~--~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLgG 419 (762)
+.. .+....|+|+|||||||||++++++.|++++|+++||+||++||+||.||+++ ..||||||||||+||||+|||
T Consensus 246 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgG 325 (358)
T 2nr8_A 246 SRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGG 325 (358)
T ss_dssp -------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSS
T ss_pred eccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCC
Confidence 532 34456899999999999999999999999999999999999999999999875 469999999999999999999
Q ss_pred CceeeEEEecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 420 DCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 420 nskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
||+|+|||||||+..+++||++||+||+|||.|
T Consensus 326 nskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 326 NCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp SSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999986
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1e-83 Score=699.23 Aligned_cols=313 Identities=32% Similarity=0.481 Sum_probs=247.8
Q ss_pred hcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCChhHHHhc-cchhhhhhccC
Q 004310 123 ELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQ-TKPVVTSVLDG 201 (762)
Q Consensus 123 elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~tQ~eVf~~-~~plV~svldG 201 (762)
+-.++|||+|||||+.+.|. .+...++.+++..+....+. ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEe----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 45689999999999988774 34566777765322222222 24799999999999999999998 79999999999
Q ss_pred cceeEEeeccCCCCCccccCCCC------CCCCchhhhHHHHHHHhhccCC--ceeEEEEEEEEEEEccccccccccCCC
Q 004310 202 YNVCIFAYGQTGTGKTFTMEGTP------ENRGVNYRTLEELFRVSKHRNG--IMRYELFVSMLEVYNEKIRDLLVENSN 273 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~~~--~~~~~V~vS~lEIYNE~I~DLL~~~s~ 273 (762)
||+||||||||||||||||+|++ +++|||||++++||+.+..... .+.|.|+|||+|||||+|+|||.+...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 5689999999999998875433 357999999999999999999976432
Q ss_pred CCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEE
Q 004310 274 QPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSH 353 (762)
Q Consensus 274 ~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~Sk 353 (762)
.+ .+ + ..+.|++++.|.+.+|++.+|..|.++|++++|.+|+.|||||+||+|+|.+. ...|+
T Consensus 174 ~~--~~--------~-~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~sk 236 (344)
T 3dc4_A 174 MP--MV--------A-ARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSR 236 (344)
T ss_dssp SB--CC--------S-STTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEE
T ss_pred Cc--cc--------c-ccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEE
Confidence 11 00 1 12568999999999999999999999999999999999999999999999753 35799
Q ss_pred EEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCC
Q 004310 354 LWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSS 433 (762)
Q Consensus 354 L~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~ 433 (762)
|+|||||||||++++++.|.+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||+.
T Consensus 237 l~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~ 316 (344)
T 3dc4_A 237 MNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQ 316 (344)
T ss_dssp EEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCG
T ss_pred EEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHhhHHHHHHHhHhhccccCCC
Q 004310 434 SDLGETLCSLNFASRVRGIESGPA 457 (762)
Q Consensus 434 ~~~~ETLsTLrFAsrak~I~~~p~ 457 (762)
.+++||++||+||+||+.....|+
T Consensus 317 ~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 317 CDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999998876665
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.3e-80 Score=733.13 Aligned_cols=336 Identities=40% Similarity=0.628 Sum_probs=270.5
Q ss_pred HHHHHHhhhcCCCEEEEEEeC----CCCcccccCCC-ceEEEecCC----CCceEEEeeC---CCCceeeecCeeeCCCC
Q 004310 115 KQLYNEVIELKGNIRVFCRCR----PLNKAENANGS-TSVVEFDSS----QENELQIVSS---DSSKKQFKFDYVFKPED 182 (762)
Q Consensus 115 k~l~N~l~elkGnIRV~~RvR----Pl~~~E~~~~~-~~vv~~~~~----~~~~l~v~~~---~~~~k~F~FD~VF~~~~ 182 (762)
+..-.++..+.+++||||||| |....|...|. ...+..++. ....+.+... ....+.|.||+||++++
T Consensus 363 ~~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~ 442 (715)
T 4h1g_A 363 AAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ 442 (715)
T ss_dssp HHHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC
T ss_pred HHHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC
Confidence 345567889999999999999 55555544443 344444332 2234444332 33568999999999999
Q ss_pred ChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhcc-CCceeEEEEEEEEEEEc
Q 004310 183 NQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR-NGIMRYELFVSMLEVYN 261 (762)
Q Consensus 183 tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYN 261 (762)
+|++||+.+.|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.++.. .....|.|+|||+||||
T Consensus 443 ~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyn 520 (715)
T 4h1g_A 443 SNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520 (715)
T ss_dssp CHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEC
Confidence 99999999899999999999999999999999999999994 6799999999999987653 34578999999999999
Q ss_pred cccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEe
Q 004310 262 EKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKG 341 (762)
Q Consensus 262 E~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~ 341 (762)
|+|+|||.+... ....+.++++...|.++|.||+++.|.|.+|++.+|..|.++|++++|.+|.+|||||+||+|+|.+
T Consensus 521 e~i~DLl~~~~~-~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~ 599 (715)
T 4h1g_A 521 EAIVDLLNPKID-PNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG 599 (715)
T ss_dssp TEEEESSSCCCC-TTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEE
T ss_pred CEEEECCCCCCC-CCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEE
Confidence 999999986533 3456788888887888999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcC-CCCccCCCCchhhhcccccCCC
Q 004310 342 ENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK-SGHIPYRNSKLTHILQSSLGGD 420 (762)
Q Consensus 342 ~~~~~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLgGn 420 (762)
.+...+....|+|+|||||||||++++++.|+|++|+++||+||++||+||.+|+.+ ..||||||||||+||||+||||
T Consensus 600 ~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn 679 (715)
T 4h1g_A 600 YNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGN 679 (715)
T ss_dssp EETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTT
T ss_pred EecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCC
Confidence 988888889999999999999999999999999999999999999999999999854 5899999999999999999999
Q ss_pred ceeeEEEecCCCCCChHhhHHHHHHHhHhhccc
Q 004310 421 CKTLMFVQISPSSSDLGETLCSLNFASRVRGIE 453 (762)
Q Consensus 421 skT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~ 453 (762)
|+|+|||||||+..+++||++||+||+|||+|+
T Consensus 680 ~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 680 SKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred ceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999996
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=307.31 Aligned_cols=280 Identities=14% Similarity=0.181 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-cccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCCCC
Q 004310 105 KKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLN-KAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDN 183 (762)
Q Consensus 105 ~~~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~-~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~~t 183 (762)
++|.+|+..||+|||.++||||||||||||||.. + ....+.++.. .+.+ .. ..+.|.||+||++.+.
T Consensus 3 dK~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p------~~~~v~y~~~---~I~v-~~--~~k~f~FDRVf~p~s~ 70 (298)
T 2o0a_A 3 STVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP------ENLLFDYENG---VITQ-GL--SEHVYKFNRVIPHLKV 70 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC------TTEEEETTTT---EEEE-TT--TCCEEECSEEEETTTS
T ss_pred hHHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC------ccceeecCcc---ceee-cC--CCceEEeeeEECcccc
Confidence 3688999999999999999999999999999964 3 1233555543 2443 22 3489999999999999
Q ss_pred hh--HHHhccchhhhhhcc-CcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEE
Q 004310 184 QE--AVFAQTKPVVTSVLD-GYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEV 259 (762)
Q Consensus 184 Q~--eVf~~~~plV~svld-GyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEI 259 (762)
|+ +||+++.++|++||| |||+||||||||||||| ||++..+|...+. .. |+|.+++||+||
T Consensus 71 Qe~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~--~~Y~~tlq~veL 135 (298)
T 2o0a_A 71 SEDKFFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ--KQYVITLQFVFL 135 (298)
T ss_dssp CHHHHHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH--HHEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc--cceEEEEEEEEE
Confidence 99 999999999999999 99999999999999999 9999999987754 33 899999999999
Q ss_pred E-ccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecC-hHHHHHHHHHHhhcccccccCCCCCCCCceeEEEE
Q 004310 260 Y-NEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYG-TEEVWELLKSGARVRSVGSTNANELSSRSHCLLRV 337 (762)
Q Consensus 260 Y-NE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S-~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I 337 (762)
| ||.++|||...+.. .+++|+.+.+++ ..|.|++.+.|.+ .+|+..++..+. .+..|+ +.-.|+.+
T Consensus 136 y~Ne~~~DLL~~~~~~--~k~eIk~~~~g~-~iv~~s~~i~V~~~~edv~~~~~~~~------~~~~~~---~gi~i~k~ 203 (298)
T 2o0a_A 136 SDDEFSQDMLLDYSHN--DKDSIKLKFEKH-SISLDSKLVIIENGLEDLPLNFSCDE------HPNLPH---SGMGIIKV 203 (298)
T ss_dssp ECC-CEEETTSCCC--------CEEEECSS-CEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEE
T ss_pred ecCCchHHhcCCCCCC--CcceEEecCCCC-EEecccEEEEccccHHHHHHHhhccc------ccccCC---CCceEEEE
Confidence 9 99999999744332 277899887755 4599999999999 899887762221 122222 23566666
Q ss_pred EEEeeeccCC---ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcc
Q 004310 338 SVKGENLING---QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQ 414 (762)
Q Consensus 338 ~V~~~~~~~g---~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLq 414 (762)
.+...+.... ....-.++|+.+.-.. +...|.+. +..+ -+-.|+++-+|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~~---~~~~----~~~~spi~~il~ 256 (298)
T 2o0a_A 204 QFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKS---IFKK----ESCETPIALVLK 256 (298)
T ss_dssp EEEESCC-------CCCEEEEEEEECSHH--------------------HHHHHHHH---HHTC-----CCCSHHHHHHH
T ss_pred EEecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHhh---cccc----cccCCcHHHHHH
Confidence 6655321111 1123457777764321 12233332 2122 355788888888
Q ss_pred cccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccC
Q 004310 415 SSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESG 455 (762)
Q Consensus 415 dsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~ 455 (762)
.-|. +.|.++++++.-+. +.-.-|..++++..+.+.
T Consensus 257 ~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~ 292 (298)
T 2o0a_A 257 KLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCK 292 (298)
T ss_dssp HHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC-
T ss_pred HHHh-cCcceEEEEecCCC----chhHHHHHHHHhhcccCc
Confidence 6554 56889999997543 233467788888777654
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=2.4e-27 Score=220.39 Aligned_cols=81 Identities=48% Similarity=0.695 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHHhcCC-CCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCCCccc
Q 004310 382 NKSLSALGDVISALASKS-GHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQ 460 (762)
Q Consensus 382 NkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p~~~~ 460 (762)
|+||++||+||.+|+++. .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|++.|..+.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 6999999999999999999999999999999999999999999999999999999998775
Q ss_pred cc
Q 004310 461 SD 462 (762)
Q Consensus 461 ~~ 462 (762)
..
T Consensus 81 ~~ 82 (117)
T 3kin_B 81 EL 82 (117)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 31
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=5.8e-28 Score=218.20 Aligned_cols=84 Identities=46% Similarity=0.669 Sum_probs=79.6
Q ss_pred HHHHhhhHHHHHHHHHHHhcC-CCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhccccCC
Q 004310 378 SQFINKSLSALGDVISALASK-SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGP 456 (762)
Q Consensus 378 a~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I~~~p 456 (762)
+++||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|++.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 357999999999999999987 6899999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 004310 457 ARKQS 461 (762)
Q Consensus 457 ~~~~~ 461 (762)
..+..
T Consensus 81 ~~n~~ 85 (100)
T 2kin_B 81 SVNLE 85 (100)
T ss_dssp CCEEE
T ss_pred eeccC
Confidence 87754
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.39 E-value=4.2e-06 Score=88.72 Aligned_cols=272 Identities=14% Similarity=0.172 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecC
Q 004310 96 LSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFD 175 (762)
Q Consensus 96 l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD 175 (762)
.+..|...-+++.+|...||+|-|-+.|+||.||+|+=+-.-.. +. -+.++-. +..+. ..+..+.|.||
T Consensus 29 ~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~~-----p~--~~~idY~-~~~It---~~~~~~~y~Fn 97 (333)
T 4etp_B 29 QEKFYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNL-----PE--NLLFDYE-NGVIT---QGLSEHVYKFN 97 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSC-----CS--SCEEETT-TTEEE---C--CCCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcEEEEEEECcccC-----Cc--cEEEecc-cceEe---ecCCcceEEEe
Confidence 35566666778888999999999999999999999999876221 11 1233333 22332 33457899999
Q ss_pred eeeCCCC--ChhHHHhccchhhhhhc-cCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCC--ceeE
Q 004310 176 YVFKPED--NQEAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNG--IMRY 250 (762)
Q Consensus 176 ~VF~~~~--tQ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~--~~~~ 250 (762)
+|++... .+..+|++++..++.|+ .+.|+.||..|+.- + +.....|+..+..... .+.|
T Consensus 98 RiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~----w------------~~Lr~~lL~fi~~k~~~Y~~~y 161 (333)
T 4etp_B 98 RVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP----H------------GSLRESLIKFLAEKDTIYQKQY 161 (333)
T ss_dssp EEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC----C------------CHHHHHHHHHHHSTTCHHHHHE
T ss_pred eeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC----c------------HHHHHHHHHHHHhcccccccce
Confidence 9997776 56777889999999999 99999999998641 1 1233444444433311 2678
Q ss_pred EEEEEEEEEEccc-cccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCC
Q 004310 251 ELFVSMLEVYNEK-IRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSS 329 (762)
Q Consensus 251 ~V~vS~lEIYNE~-I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SS 329 (762)
.+++.|+.+-++. ..|||...+......+.++-.. ..+.+ +-+.+.+.+..+...++.+ ..+.-+- -.
T Consensus 162 ~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee--~sI~l-dS~~i~i~~~~~~l~~~~k-------l~~~~~~-~~ 230 (333)
T 4etp_B 162 VITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEK--HSISL-DSKLVIIENGLEDLPLNFS-------ADEHPNL-PH 230 (333)
T ss_dssp EEEEEEEECCSSSCCEESSCC----------CEEET--TEEEC-CSCCEEESSGGGGSCTTSS-------CCC-------
T ss_pred EEEEEEEEEcCCCchhhhhccccccCCCCceEEeec--ceEee-cceEEEeccccccchhhhc-------cccCCCC-CC
Confidence 9999998888776 7899976533222222222221 22222 3444555554432221110 0000000 11
Q ss_pred CceeEEEEEEEeeeccCC---ceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCC
Q 004310 330 RSHCLLRVSVKGENLING---QKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRN 406 (762)
Q Consensus 330 RSH~If~I~V~~~~~~~g---~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRd 406 (762)
..-.|+.+.+...+.... ....-..+||.+-+.. ....|.++|.-= -.-.
T Consensus 231 ~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i~~~-------~~~~ 283 (333)
T 4etp_B 231 SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSIFKK-------ESAE 283 (333)
T ss_dssp --CEEEEEEEEECC--------CCCEEEEEEEECSHH--------------------HHHHHHSCC-----------CCC
T ss_pred CCceEEEEEEEecCcccccccCCcceeEEEEEecChh--------------------HHHHHHhhcCcc-------cccC
Confidence 244566777665443211 1124478898886543 122333332211 1335
Q ss_pred CchhhhcccccCCCceeeEEEecCCCC
Q 004310 407 SKLTHILQSSLGGDCKTLMFVQISPSS 433 (762)
Q Consensus 407 SKLT~LLqdsLgGnskT~mI~~ISP~~ 433 (762)
|+++-+|+.-| -+.|.++++++.-..
T Consensus 284 spi~~ilkkLl-~~TKS~flfnl~~~~ 309 (333)
T 4etp_B 284 TPIALVLKKLI-SDTKSFFLLNLNDSK 309 (333)
T ss_dssp CHHHHHHHHHH-HHSBCEEEEEECCST
T ss_pred CCHHHHHHHHH-hhCcceEEEEcCCcc
Confidence 67777776544 456889999997543
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.79 E-value=0.0049 Score=59.17 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=39.8
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+.++||.....+..|.++++.+..++.++-......++-||++|+|||+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 346888876666678899988888887765444556788999999999887
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.31 E-value=0.018 Score=56.05 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=36.8
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcc-eeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYN-VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN-~~IfAYGqTGSGKTyTM 220 (762)
..++||.....+..+..+++.+..++...-.++. ..|+-||++|+|||+.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 3567887666555677777776666665544432 67889999999999886
No 35
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.21 E-value=0.044 Score=58.04 Aligned_cols=51 Identities=14% Similarity=0.295 Sum_probs=35.6
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.++||.+......+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 367776554443556677666666666544445678889999999999884
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.17 E-value=1.2 Score=49.44 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=45.0
Q ss_pred eecCeeeCCCCChhHHHhcc-chhhh-hhcc--Cc--ceeEEeeccCCCCCccccCC--------------C---CCCCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPVVT-SVLD--GY--NVCIFAYGQTGTGKTFTMEG--------------T---PENRG 228 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~plV~-svld--Gy--N~~IfAYGqTGSGKTyTM~G--------------~---~~~~G 228 (762)
-+||.|-+-+..-+++.+.+ .|+.. ..+. |. .-.|+-||+.|+|||+..-. + ..-.|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 46666666544334443332 23222 1222 22 23599999999999976532 1 22357
Q ss_pred chhhhHHHHHHHhhccCC
Q 004310 229 VNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 229 IipRal~~LF~~~~~~~~ 246 (762)
--.+.++++|........
T Consensus 249 e~e~~ir~lF~~A~~~aP 266 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENAP 266 (428)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHcCC
Confidence 778899999998876554
No 37
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.95 Score=50.48 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=67.9
Q ss_pred hhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCC--C--------CceeeecCeeeCCCCChhHHHhc
Q 004310 121 VIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSD--S--------SKKQFKFDYVFKPEDNQEAVFAQ 190 (762)
Q Consensus 121 l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~--~--------~~k~F~FD~VF~~~~tQ~eVf~~ 190 (762)
+......-+.++++..+...+...... -|.++......+.+.... . ..-.-+||.|-+-+..-+++.+.
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~ 196 (434)
T 4b4t_M 118 VVKTSSRQTVFLPMVGLVDPDKLKPND-LVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEA 196 (434)
T ss_dssp EEEETTSCEEEEECCSSSCTTTSCSSE-EEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHH
T ss_pred EEEcCCCCeEEEecccccCHhHCCCCC-EEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHH
Confidence 344455566778887766554332222 222332222222222211 1 11235677777766555555544
Q ss_pred c-chhhh-hhcc--C--cceeEEeeccCCCCCccccCC--------------C---CCCCCchhhhHHHHHHHhhccCC
Q 004310 191 T-KPVVT-SVLD--G--YNVCIFAYGQTGTGKTFTMEG--------------T---PENRGVNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 191 ~-~plV~-svld--G--yN~~IfAYGqTGSGKTyTM~G--------------~---~~~~GIipRal~~LF~~~~~~~~ 246 (762)
+ .|+.. ..+. | +--.|+-||+.|+|||++.-. + ..-.|--.+.++.+|........
T Consensus 197 v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 197 IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp THHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC
Confidence 2 34332 2232 2 234689999999999976531 1 23357778899999988776554
No 38
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=88.34 E-value=1.5 Score=45.90 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=125.0
Q ss_pred HHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCceeeecCeeeCCC--CChhHHHhccchh
Q 004310 117 LYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPE--DNQEAVFAQTKPV 194 (762)
Q Consensus 117 l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k~F~FD~VF~~~--~tQ~eVf~~~~pl 194 (762)
|-|-+.|+||.||.|+=+-.-.- ... +.+|-. ...+. ..+..+.|.|++|.+.. ..++-+|++++..
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l-----~~~--~~IdY~-~~tI~---~~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y 72 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEI-----SEK--LIVNYS-DESIE---DMKNHKTYKFTKLIQNFSHQNKDLFKEDLHVY 72 (275)
T ss_dssp ------------CEEEEEETTTS-----CTT--EEEETT-TTEEE---ETTTTEEEECSEEEEECSSSCCCGGGTHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccC-----Ccc--EEEecc-cceec---cCCCccEEEEEeeeccccCCHHHHHHHHHHHH
Confidence 66899999999999998854221 111 233333 22332 34556899999999644 3455566779999
Q ss_pred hhhhc-cCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccc-cccccccCC
Q 004310 195 VTSVL-DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEK-IRDLLVENS 272 (762)
Q Consensus 195 V~svl-dGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~-I~DLL~~~s 272 (762)
.+.|+ .+.|+.||..++.--+ -+.-..+..+... .. ..|.+.+.|+=+-.+. =-|||....
T Consensus 73 ~DmCL~k~~NfnlISiS~~~~~------------~lr~~ll~f~~~~----y~-~~y~itlQ~V~Ls~~~~S~Dll~~~~ 135 (275)
T 4gkp_A 73 IDFCLKRRENFNLFSVGSSNIP------------NTFEKLLAFFKNN----YF-DKFVITLQYVMLSDNADSQDLLSNNK 135 (275)
T ss_dssp HHHHHHTTCCEEEEEECCSSCC------------SHHHHHHHHHHHH----TT-TTEEEEEEEEEEC----CEETTCC--
T ss_pred HHHHhccCCCceEEEecCCCcH------------HHHHHHHHHHHHh----cc-ccceEEEEEEEecCCCcccccccCCc
Confidence 99888 7999999999864421 2233333333322 21 3578888887666444 448886543
Q ss_pred CCC-CccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEE
Q 004310 273 NQP-SKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTK 351 (762)
Q Consensus 273 ~~~-~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~ 351 (762)
... ...+.++.+.+ .+.+ +-+.+.+.+..+...+ .-..-+......-.|+++.+...+... ...
T Consensus 136 ~~~~d~eI~Lk~e~~--sI~l-dS~~i~i~~~~~~~~~----------~~~~~~~~~~~Gi~IlKfq~~~~~~~e--~~p 200 (275)
T 4gkp_A 136 DGGKDVEIKLKIEES--TISL-GSTLITLDEITDKLQI----------KKKYSQLNHQNGIGLSKFQFFCLQDIE--PIP 200 (275)
T ss_dssp --------CEEECSS--CEEE-CSCCEEGGGCCSCC------------CCSCC-----CCEEEEEEEEEETTCSS--CCC
T ss_pred cccCCcceeEEeecc--eeee-cceEEEeccCccccch----------hhhccCCCCCCCceEEEEEEEeccCCC--CCc
Confidence 221 11233333222 2222 2223333322211111 000011111223346666665443222 122
Q ss_pred EEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCC
Q 004310 352 SHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISP 431 (762)
Q Consensus 352 SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP 431 (762)
-.++||.+-+..- ...|.+++. ... +-.|.++-+|+.- -...|-+++.++.-
T Consensus 201 idfYFiei~~~~t--------------------~~~L~~~~s----~~~---~~~spi~~iLk~L-L~~TKS~flfni~~ 252 (275)
T 4gkp_A 201 IDFYFIEIYQPSI--------------------YPILKRSTG----TES---NLNSPLEIVLKKI-FHDTKSAFVFQIDH 252 (275)
T ss_dssp EEEEEEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHH-HHHSBCCEEEEESS
T ss_pred eeEEEEEecCHHH--------------------HHHHHhccC----CCC---CCCCcHHHHHHHH-HhcCcceEEEEccC
Confidence 3678888866531 122222221 111 1127777666643 45678899999964
Q ss_pred CCCChHhhHHHHHHHhHhhccccC
Q 004310 432 SSSDLGETLCSLNFASRVRGIESG 455 (762)
Q Consensus 432 ~~~~~~ETLsTLrFAsrak~I~~~ 455 (762)
. ++.-..|..+.++.++++-
T Consensus 253 ~----~n~~~lL~ls~~l~~~~~~ 272 (275)
T 4gkp_A 253 S----AEVYDILKLSSHLSFIRNP 272 (275)
T ss_dssp C----TTHHHHHHHHHHHTTCCCC
T ss_pred c----chHHHHHHHHHHhccccCc
Confidence 3 2344678888888888753
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.34 E-value=0.18 Score=51.13 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=22.1
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 37888887654333333332 232222 3467888999999999775
No 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.78 E-value=0.5 Score=44.48 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=25.2
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+.||.-+. .. +.+.+.....+ .|. .++-||++|+|||+.+
T Consensus 12 ~~~~~~~f~~-g~-n~~~~~~l~~~-----~g~--~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 12 DYPSFDKFLG-TE-NAELVYVLRHK-----HGQ--FIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCCCCCCCCS-CC-THHHHHHCCCC-----CCS--EEEEESSSTTTTCHHH
T ss_pred CccchhhcCc-Cc-cHHHHHHHHhc-----CCC--EEEEECCCCCCHHHHH
Confidence 3466665333 33 33344433333 443 5667999999999987
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.64 E-value=0.3 Score=47.62 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=27.8
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+.||.++.. ..+..++.....++. .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 567765552 233455544333332 234567899999999999877
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.74 E-value=0.4 Score=50.11 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=29.8
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+||..... ..+...+..+..++..-- +....++-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 5788886532 233444544444443321 13346889999999999887
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.41 E-value=6.2 Score=43.58 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=45.6
Q ss_pred eecCeeeCCCCChhHHHhcc-chhhh-hhcc--C--cceeEEeeccCCCCCccccCC--------------C---CCCCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPVVT-SVLD--G--YNVCIFAYGQTGTGKTFTMEG--------------T---PENRG 228 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~plV~-svld--G--yN~~IfAYGqTGSGKTyTM~G--------------~---~~~~G 228 (762)
-+||.|-+-+..-+++.+.+ .|+.. ..+. | .--.|+-||+.|+|||+..-- + ..-.|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 45666666544444444432 33332 2233 2 234699999999999976521 1 12356
Q ss_pred chhhhHHHHHHHhhccCC
Q 004310 229 VNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 229 IipRal~~LF~~~~~~~~ 246 (762)
--.+.++++|........
T Consensus 225 ese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 778899999998876654
No 44
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.23 E-value=3.6 Score=45.90 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=27.3
Q ss_pred eecCeeeCCCCChhHHHhcc-chhhh-hhccCc----ceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPVVT-SVLDGY----NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~plV~-svldGy----N~~IfAYGqTGSGKTyTM 220 (762)
.+||.|-+-+..-+++.+.+ .|+.. ..+.++ --.|+-||+.|+|||++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 45666665444333333332 23322 223322 346999999999999764
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.95 E-value=0.53 Score=49.48 Aligned_cols=47 Identities=32% Similarity=0.345 Sum_probs=29.9
Q ss_pred cCeeeCCCCChhHHHhccchhhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 174 FDYVFKPEDNQEAVFAQTKPVVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 174 FD~VF~~~~tQ~eVf~~~~plV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
.+.+++.-..+++..+.....+..++ .+...+++-||++|+|||+.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333333345555555555555554 345568999999999999877
No 46
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.86 E-value=0.48 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=20.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..+..+....|+-||++|+|||+.+
T Consensus 34 l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 34 TIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 333344466677899999999999887
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.69 E-value=0.42 Score=48.71 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=28.0
Q ss_pred cCeeeCCCCChhHHHhccchhhhhhc---cCcceeEEeeccCCCCCcccc
Q 004310 174 FDYVFKPEDNQEAVFAQTKPVVTSVL---DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 174 FD~VF~~~~tQ~eVf~~~~plV~svl---dGyN~~IfAYGqTGSGKTyTM 220 (762)
++.+++.+.....+......++..+. ......|+-||++|+|||+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 34444433333344433222443332 566778999999999999876
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.17 E-value=0.54 Score=47.48 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=32.5
Q ss_pred eeeecCeeeCCCCChhHHHhccchh-----hhhhccCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPV-----VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~pl-----V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+.||.+.+.+...+.+.+.+..+ ...+-......|+-||++|+|||+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 3578899888877666665533221 11111122345899999999999876
No 49
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.92 E-value=0.53 Score=47.94 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred eeecCeeeCCCCChhHHHhccc-h-----hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTK-P-----VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~-p-----lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+.||.+.+.+..-+.+.+.+. + +....--....+|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 5788888875544444433321 1 111111123456899999999999876
No 50
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=77.42 E-value=0.69 Score=51.27 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=29.9
Q ss_pred ceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 169 KKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 169 ~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
...|+||...... ++...+..+..++.. .|..-.++-||++|+|||+.+
T Consensus 99 ~~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 99 NPDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CTTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 3468888755322 233344444444333 231346889999999999988
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.34 E-value=0.71 Score=48.23 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=28.8
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..|.||.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 458899887743 33221 222333444456999999999999876
No 52
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.24 E-value=0.78 Score=47.77 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-||++|+|||+..
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999865
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.51 E-value=0.53 Score=43.77 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=20.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..+..+....|+-||++|+|||+.+
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 333344466677899999999999876
No 54
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.23 E-value=0.87 Score=43.76 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=18.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4455677866 567889999999754
No 55
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.80 E-value=0.81 Score=44.71 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=19.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678876 67889999999987
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.61 E-value=0.86 Score=48.10 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=31.5
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcce--eEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNV--CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~--~IfAYGqTGSGKTyTM 220 (762)
.+.||.+.+ |+.+......++..+..|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 355777665 445544444555555566654 7899999999999876
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.56 E-value=0.59 Score=47.00 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=28.2
Q ss_pred eeeecCeeeCCCCChhHHHhccchhh-hhhccCc----ceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVV-TSVLDGY----NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV-~svldGy----N~~IfAYGqTGSGKTyTM 220 (762)
..++||.|.+.+....++-+-+..+- ..++++. ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 35788888776543333322111110 0112211 223899999999999887
No 58
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.42 E-value=0.91 Score=43.60 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=18.8
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 3455677876 567789999999873
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.92 E-value=1 Score=47.53 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=26.3
Q ss_pred ChhHHHhccchhhhhhccCcc-e--eEEeeccCCCCCcccc
Q 004310 183 NQEAVFAQTKPVVTSVLDGYN-V--CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 183 tQ~eVf~~~~plV~svldGyN-~--~IfAYGqTGSGKTyTM 220 (762)
.+++..+.....+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 345555555555666655543 3 6899999999999876
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.40 E-value=1.3 Score=46.32 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=23.9
Q ss_pred hhHHHhccchhhhhhcc-CcceeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVLD-GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svld-GyN~~IfAYGqTGSGKTyTM 220 (762)
+++..+.....+..++. +...+++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 44444444444444433 44558899999999999876
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.03 E-value=1.2 Score=49.33 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=31.9
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcc--eeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN--~~IfAYGqTGSGKTyTM 220 (762)
.+.||.|.+ |+++.+.+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456677765 56666655556666656643 35788999999999875
No 62
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.78 E-value=1.1 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=19.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556678877 578889999999863
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=70.70 E-value=0.75 Score=49.16 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=21.4
Q ss_pred hhhhhc-cCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVL-DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svl-dGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++ .|...+|+-||++|+|||.++
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334433 678889999999999999876
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.64 E-value=1.3 Score=45.39 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.4
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446899999999999876
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=69.77 E-value=0.74 Score=45.88 Aligned_cols=25 Identities=40% Similarity=0.741 Sum_probs=19.8
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4566778877 577899999999773
No 66
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.27 E-value=1.5 Score=43.63 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.2
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4457899999999999876
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=68.48 E-value=1.4 Score=43.53 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=18.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455678877 566789999999864
No 68
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.80 E-value=1.4 Score=43.31 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45667788775 67789999999764
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.59 E-value=1.5 Score=41.67 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=16.0
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
|....++-||++|+|||+.+
T Consensus 36 ~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 36 KNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 33335999999999999876
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.37 E-value=1.4 Score=42.92 Aligned_cols=25 Identities=20% Similarity=0.479 Sum_probs=18.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4556677877 566779999999765
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.79 E-value=1.1 Score=45.96 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=27.8
Q ss_pred eeeecCeeeCCCCChhHHHhccchhh-hhhccCc----ceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVV-TSVLDGY----NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV-~svldGy----N~~IfAYGqTGSGKTyTM 220 (762)
..+.||.|.+.+....++.+.+..+- ..++++. ...|+-||++|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 35778887765443333322211110 0112221 123899999999999877
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.70 E-value=15 Score=40.98 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=32.4
Q ss_pred eeEEeeccCCCCCccccC--------------CC---CCCCCchhhhHHHHHHHhhccCC
Q 004310 204 VCIFAYGQTGTGKTFTME--------------GT---PENRGVNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~--------------G~---~~~~GIipRal~~LF~~~~~~~~ 246 (762)
-.|+-||+.|+|||...- |+ ....|--.+.++.+|........
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAP 276 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCS
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCC
Confidence 569999999999997542 21 23457778999999998876654
No 73
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.59 E-value=1.2 Score=45.67 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=29.2
Q ss_pred eeecCeeeCCCCChhHHHhcc-chhh-hhhcc---CcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQT-KPVV-TSVLD---GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~-~plV-~svld---GyN~~IfAYGqTGSGKTyTM 220 (762)
...||.+.+.+..-+.+.+.+ .++. ...+. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888877544333333322 2221 11222 23567899999999999876
No 74
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=66.45 E-value=1.2 Score=45.37 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=19.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 4556778876 678899999999763
No 75
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.69 E-value=1.8 Score=45.18 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|..--++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677774445788999999999764
No 76
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=65.46 E-value=1.8 Score=47.96 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=21.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..++..-...|.-.|+||||||.||
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 445555556678899999999999998
No 77
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=65.14 E-value=0.87 Score=43.77 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=17.9
Q ss_pred hhhhccCcceeEEeeccCCCCCcccc
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..+++|.+ ++..|+||||||++.
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344556765 567899999999876
No 78
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=65.09 E-value=1.7 Score=43.36 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4566778877 466689999999764
No 79
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=64.55 E-value=2.1 Score=47.63 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=28.2
Q ss_pred ChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 183 NQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 183 tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+.+......+...+-.|.-..++-||++|+|||+..
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 46677755555655555666578999999999999776
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.38 E-value=1.8 Score=45.53 Aligned_cols=41 Identities=34% Similarity=0.547 Sum_probs=25.2
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+.+++ |+.+.+.....|. .|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHH
Confidence 4555664 4555544333332 343223778999999999987
No 81
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=63.72 E-value=1.3 Score=45.97 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=28.5
Q ss_pred eeecCeeeCCCCChhHHHhcc-chhhh-hhc----cCcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQT-KPVVT-SVL----DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~-~plV~-svl----dGyN~~IfAYGqTGSGKTyTM 220 (762)
.+.||.|.+.+..-+.+.+.+ .|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 367777777544433444332 12110 011 123456899999999999776
No 82
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.23 E-value=2.2 Score=42.86 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=28.6
Q ss_pred eeecCeeeCCCCChhHHHhccchhhh-hhcc----CcceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVT-SVLD----GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~-svld----GyN~~IfAYGqTGSGKTyTM 220 (762)
.+.||.+.+.+..-+.+.+.+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 46788887755443333332211111 1111 22346899999999999876
No 83
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.20 E-value=1.6 Score=46.00 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=25.3
Q ss_pred hhHHHhccchhhhhhccC-cceeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVLDG-YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svldG-yN~~IfAYGqTGSGKTyTM 220 (762)
+++..+.....+..++.| ...+|+-||++|+|||+.+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 445555544555555444 3458999999999999876
No 84
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.17 E-value=1.9 Score=46.71 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=20.1
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+.+++.-....|.-.|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344444444557888999999999998
No 85
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.15 E-value=2.2 Score=45.21 Aligned_cols=26 Identities=38% Similarity=0.693 Sum_probs=20.8
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 35667788888 577899999999873
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=62.78 E-value=1.8 Score=43.06 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=18.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.|+ +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 34556788774 55679999999874
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=62.68 E-value=1.8 Score=43.09 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.7
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 34555566754 577899999999755
No 88
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.57 E-value=75 Score=29.79 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 478 QDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 478 ~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
..++++..|+.++...+.++.........+++++..|+.++
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333
No 89
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.45 E-value=2.1 Score=42.27 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=18.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455677877 466789999999773
No 90
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.94 E-value=2.1 Score=43.11 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=18.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4556678876 456679999999874
No 91
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=61.57 E-value=2.2 Score=39.22 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
+..|+-||.+|+|||+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 4457889999999998764
No 92
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.45 E-value=2.2 Score=44.48 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=28.7
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhc--cCcceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVL--DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svl--dGyN~~IfAYGqTGSGKTyTM 220 (762)
.||.+.+ ++.+...+...+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4565554 4555555445555443 344557899999999999766
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.36 E-value=44 Score=31.37 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 475 KLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQE 529 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e 529 (762)
.....+.++..+..++..+...+...+...+.+..++.++..++.+..++..+.+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777777777777777777777777777777777665555443
No 94
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.85 E-value=3 Score=42.91 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=27.7
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhc--cCcceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVL--DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svl--dGyN~~IfAYGqTGSGKTyTM 220 (762)
..||.+.+. ..+...+..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~----~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 456666553 344444334444332 234567888999999999776
No 95
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.47 E-value=2.7 Score=43.77 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=17.2
Q ss_pred hccCcceeEEeeccCCCCCcccc
Q 004310 198 VLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 198 vldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..|.-..++-||++|+|||+++
T Consensus 53 l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHH
T ss_pred HhcCCCCEEEEECCCCCCHHHHH
Confidence 33453334888999999999876
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.61 E-value=2 Score=46.31 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=29.0
Q ss_pred eeeecCeeeCCCCChhHHHhcc-chhh-hhhcc---CcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQT-KPVV-TSVLD---GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~-~plV-~svld---GyN~~IfAYGqTGSGKTyTM 220 (762)
..+.||.+.+.+..-+.+.+.+ .++. ..++. ....+|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3467888877443333333222 1111 11112 22357999999999999876
No 97
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=58.60 E-value=2.7 Score=44.62 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=20.9
Q ss_pred chhh-hhhccC---cceeEEe--eccCCCCCcccc
Q 004310 192 KPVV-TSVLDG---YNVCIFA--YGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV-~svldG---yN~~IfA--YGqTGSGKTyTM 220 (762)
...+ ..+..| ...+++- ||+.|+|||+.+
T Consensus 35 ~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 35 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 3344 555555 4567888 999999999876
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.52 E-value=29 Score=29.24 Aligned_cols=41 Identities=15% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 471 QMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKV 511 (762)
Q Consensus 471 ~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~ 511 (762)
++...++...++++.....+..++.++.+++..++.|+.++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 99
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=58.46 E-value=1.5 Score=42.78 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=18.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34566678764 56789999999863
No 100
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=58.30 E-value=2.9 Score=45.96 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=20.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 44566777666789999999999976
No 101
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=57.91 E-value=4.3 Score=44.76 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.2
Q ss_pred hhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++..++.|.+. ++..|+||||||...
T Consensus 10 ~~i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 10 EVDEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CCCGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 457778888775 567799999999863
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.66 E-value=3.3 Score=42.62 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.3
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...+.-.|+||||||.++
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 446778899999999988
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.63 E-value=2.6 Score=44.81 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=19.5
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4566778887 567789999999764
No 104
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.49 E-value=2.9 Score=44.17 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=20.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 456677775566788899999999873
No 105
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=56.75 E-value=3 Score=42.57 Aligned_cols=41 Identities=32% Similarity=0.322 Sum_probs=25.2
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+.+.+ |+++.+.....+. .|....++-||+.|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 4555443 4455544333333 344344899999999999876
No 106
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=56.47 E-value=2.9 Score=43.65 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=19.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|....++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 445667774455788899999999764
No 107
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.90 E-value=3.4 Score=39.46 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..++-||+.|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999876
No 108
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.76 E-value=3.3 Score=42.38 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..++-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999876
No 109
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.29 E-value=3.3 Score=43.32 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||.+.+ |+.+.+.....+...-.+.+ ++-||+.|+|||+++
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSDQPRDLPH--LLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTTCTTCCCC--EEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHhhCCCCCe--EEEECCCCCCHHHHH
Confidence 4565553 55555544333311112233 788999999999887
No 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=55.15 E-value=3.3 Score=38.05 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=16.3
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 44566899999999999765
No 111
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.92 E-value=85 Score=30.03 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 476 LKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 476 lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
++...+.+..+++++..++.++...+...+.++++..+|-++.
T Consensus 91 l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 91 IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555555555444443333
No 112
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=54.46 E-value=3.5 Score=41.44 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=18.0
Q ss_pred hhhhccCcceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
+..++++.+ ++.+|+||+|||+...
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 334566655 5667899999998763
No 113
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=54.46 E-value=2.5 Score=44.53 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=28.2
Q ss_pred eecCeeeCCCCChhHHHhcc-chhh-hhhccCc---ceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPVV-TSVLDGY---NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~plV-~svldGy---N~~IfAYGqTGSGKTyTM 220 (762)
..||.|.+.+..-+.+.+.+ .|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46777776544333333322 2221 1233332 246889999999999876
No 114
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=54.28 E-value=4.2 Score=41.58 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=25.5
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||.+.+ |+++.+.....+. .|....++-||+.|+|||++.
T Consensus 23 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp STTTCCS----CHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhhC----CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 3555443 5555554333333 344334889999999999876
No 115
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=53.40 E-value=3.1 Score=44.01 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=19.1
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4556677877 567789999999764
No 116
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=53.35 E-value=3.4 Score=42.20 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=18.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 3445667776 566789999999765
No 117
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=53.23 E-value=4.5 Score=45.23 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.+-.++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 456677774456788899999999873
No 118
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=53.18 E-value=3.1 Score=42.31 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999876
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=52.88 E-value=4.2 Score=42.11 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=25.1
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccC-cceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDG-YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldG-yN~~IfAYGqTGSGKTyTM 220 (762)
+||.+.+ |+++.......+. .| ....++-||++|+|||+++
T Consensus 24 ~~~~ivg----~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECIL----PAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSCC----CHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHhC----cHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 4555554 4444443333333 33 3356788899999999887
No 120
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.71 E-value=2.8 Score=42.41 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=19.7
Q ss_pred hhhhccC--cceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDG--YNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldG--yN~~IfAYGqTGSGKTyTM~ 221 (762)
+..++.| ..-||+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3444555 23479999999999998763
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.70 E-value=4 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=18.7
Q ss_pred hhhhccCcceeEEeeccCCCCCcccc
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..+.-.....|.-.|+||||||.++
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 33333334456888999999999988
No 122
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.65 E-value=5.9 Score=41.12 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=22.9
Q ss_pred hHHHhccchhhhhhccCc-----ceeEEeeccCCCCCcccc
Q 004310 185 EAVFAQTKPVVTSVLDGY-----NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 185 ~eVf~~~~plV~svldGy-----N~~IfAYGqTGSGKTyTM 220 (762)
+++......++..++.|+ -..|+..|+.|||||+..
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 344443444555555442 356889999999999764
No 123
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.41 E-value=3.6 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.|+ +..++||||||.+.
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 34566788875 66789999999764
No 124
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=51.18 E-value=4.3 Score=43.31 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=16.9
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
+....|+-||++|+|||+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 45567999999999999876
No 125
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.20 E-value=4.3 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=18.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455677876 57889999999984
No 126
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=49.15 E-value=1.2e+02 Score=26.55 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 484 KKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRA 532 (762)
Q Consensus 484 ~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~ 532 (762)
.+|...+..++.+.+.++..++.++.++.+.-.-+..++..+++.|.|.
T Consensus 28 ~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RL 76 (101)
T 1d7m_A 28 DQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARL 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455556677777888889999999999888888888888888777653
No 127
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=48.97 E-value=5 Score=41.87 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=22.9
Q ss_pred chhhhhhccCc---ceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGY---NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGy---N~~IfAYGqTGSGKTyTM 220 (762)
...+...++|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34567778876 348999999999999765
No 128
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=48.63 E-value=4.2 Score=42.55 Aligned_cols=49 Identities=31% Similarity=0.480 Sum_probs=27.3
Q ss_pred eecCeeeCCCCChhHHHhcc-chhh-hhhccCc---ceeEEeeccCCCCCcccc
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPVV-TSVLDGY---NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~plV-~svldGy---N~~IfAYGqTGSGKTyTM 220 (762)
..||.|.+.+..-+.+.+.+ .|+. ...+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777776443333333322 1111 1222222 346899999999999876
No 129
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=48.50 E-value=4.1 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=15.8
Q ss_pred cCcceeEEeeccCCCCCccccC
Q 004310 200 DGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.|.+.++++ ++||||||.++.
T Consensus 196 ~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 196 QGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp TTCSEEEEE-ECTTSCHHHHHH
T ss_pred cCCCceEEE-ecCCCChHHHHH
Confidence 366655554 999999999874
No 130
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=48.27 E-value=3 Score=42.54 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=17.2
Q ss_pred hhhhccCcceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
+..+++|.++. ..++||||||.+..
T Consensus 122 i~~~l~~~~~l--l~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRRI--LNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEEE--ECCCTTSCHHHHHH
T ss_pred HHHHHhcCCeE--EEcCCCCCcHHHHH
Confidence 44455565543 38999999998763
No 131
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=48.08 E-value=4.9 Score=42.13 Aligned_cols=25 Identities=20% Similarity=0.479 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556777876 566789999999765
No 132
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=48.06 E-value=4.5 Score=45.86 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.8
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|.+ |.-.|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5665 677899999999987
No 133
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=47.55 E-value=6.1 Score=41.31 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=21.9
Q ss_pred hhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
|+.+.+.....+.. ......++-||+.|+|||+++
T Consensus 21 ~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 21 QEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred cHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 55555443333322 223346889999999999876
No 134
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=46.61 E-value=5 Score=43.78 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=19.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.| +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 4556678877 577789999999864
No 135
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=46.17 E-value=6.1 Score=41.26 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.6
Q ss_pred CcceeEEeeccCCCCCcccc
Q 004310 201 GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM 220 (762)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678899999999999765
No 136
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.03 E-value=1.4e+02 Score=26.74 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 496 RLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 496 ~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
.+..|......++.++.+|+.+|++..
T Consensus 76 tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 76 TLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788889999999988887753
No 137
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.64 E-value=74 Score=28.84 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKG 126 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkG 126 (762)
+..+|......|.....++..|+++..... .....+..|..+.+..+..|..|..-|-+++-+..++..
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~-------~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHK-------IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHH
Confidence 455666667777777777777777666322 123568889999999999999999999999998877653
No 138
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.46 E-value=85 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004310 500 REHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 500 ~e~~~~~l~e~~~~Le~ql~e 520 (762)
+.+.++..++.+++|+.+|++
T Consensus 31 K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 139
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=45.12 E-value=6.2 Score=44.17 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=19.7
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.+..++.|.+-.+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566755555678889999999986
No 140
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=44.97 E-value=1.8e+02 Score=26.52 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 485 KLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 485 ~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
.|+.+++.-+..+...++.|..|..+-.+|+.++.+
T Consensus 52 ~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e 87 (129)
T 2fxo_A 52 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555554444444444433
No 141
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=44.83 E-value=7.5 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=19.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+|..+++|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 5567788888 577889999999753
No 142
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.68 E-value=27 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004310 90 LDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKG 126 (762)
Q Consensus 90 ~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkG 126 (762)
...+..|..+.+..+..|..|..-|-++|-+..++..
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ 75 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 75 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567888999999999999999999999988776653
No 143
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.14 E-value=1.3e+02 Score=33.70 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=7.7
Q ss_pred EEecCCCCCChHhhHHHH
Q 004310 426 FVQISPSSSDLGETLCSL 443 (762)
Q Consensus 426 I~~ISP~~~~~~ETLsTL 443 (762)
+||-.+....+...+..+
T Consensus 391 ~cc~~~~~~~~~~~~~~l 408 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYI 408 (597)
T ss_dssp EEEECCSSHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHh
Confidence 455444444444333333
No 144
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.65 E-value=6.4 Score=43.40 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=18.8
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4455677877 566789999999774
No 145
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.85 E-value=5.5 Score=45.07 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=28.1
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhh-hhccCc----ceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVT-SVLDGY----NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~-svldGy----N~~IfAYGqTGSGKTyTM 220 (762)
..++||.|.+.+..-.++.+.+..+-. ..+... ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 357888887754433333222111100 122222 224899999999999876
No 146
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.85 E-value=2.5e+02 Score=28.39 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 483 TKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLA 519 (762)
Q Consensus 483 ~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ 519 (762)
+..+++.+..++.++...+.....++.++..++..+.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~ 70 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 147
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=42.82 E-value=4.8 Score=44.48 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999876
No 148
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.71 E-value=5.6 Score=41.90 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=25.0
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhc-cC-cceeEEeeccCCCCCcccc
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVL-DG-YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svl-dG-yN~~IfAYGqTGSGKTyTM 220 (762)
.||.+|+ |+.+.+.+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5666665 3444444333333221 12 1134677999999999877
No 149
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=42.32 E-value=3.6 Score=43.09 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4566677877 466789999999874
No 150
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.73 E-value=6.1 Score=45.68 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=17.6
Q ss_pred hhhhccCcceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
|..++..... .+-.|+.|||||+|+.
T Consensus 198 V~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 4445543333 3567999999999974
No 151
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.73 E-value=1.3e+02 Score=25.31 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 485 KLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 485 ~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
.+...+.....+....+..+..|+.++..++..+..
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555554443
No 152
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.55 E-value=6.4 Score=37.22 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.2
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
++.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999998873
No 153
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=41.26 E-value=7.3 Score=42.74 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=18.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3445667876 466789999999774
No 154
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.23 E-value=5.6 Score=47.66 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=26.7
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.||.|++.+ +.. ..+++.+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr~----~~i---~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGRD----EEI---RRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSCH----HHH---HHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCcH----HHH---HHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 566666543 222 334444444555567889999999998874
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.62 E-value=7.4 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999744
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=40.45 E-value=8.1 Score=37.71 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=21.3
Q ss_pred chhhhhhccC-c--ceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDG-Y--NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldG-y--N~~IfAYGqTGSGKTyTM 220 (762)
-+-++.++.| . ...+.-+|++|||||..+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 4556777743 3 346778999999999876
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=40.11 E-value=6.7 Score=41.87 Aligned_cols=50 Identities=30% Similarity=0.464 Sum_probs=27.6
Q ss_pred eeecCeeeCCCCChhHHHhcc-chhh-hhhccC---cceeEEeeccCCCCCcccc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQT-KPVV-TSVLDG---YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~-~plV-~svldG---yN~~IfAYGqTGSGKTyTM 220 (762)
...||.|.+.+..-+.+.+.+ .|+- ...+.+ ....|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 356777776544333333322 1211 122222 2246888999999999876
No 158
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.07 E-value=11 Score=42.24 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=45.0
Q ss_pred eecCeeeCCCCChhHHHhcc-chhhh-hhccCc----ceeEEeeccCCCCCccccCC--------------C---CCCCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQT-KPVVT-SVLDGY----NVCIFAYGQTGTGKTFTMEG--------------T---PENRG 228 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~-~plV~-svldGy----N~~IfAYGqTGSGKTyTM~G--------------~---~~~~G 228 (762)
.+||.|-+-+..-+++.+.+ .|+.. ..+.++ --.|+-||+.|+|||++.-- . ..-.|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 56666665544333333332 23322 233332 34699999999999976421 1 23357
Q ss_pred chhhhHHHHHHHhhccCC
Q 004310 229 VNYRTLEELFRVSKHRNG 246 (762)
Q Consensus 229 IipRal~~LF~~~~~~~~ 246 (762)
--.+.++.+|........
T Consensus 286 esek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 286 EGARMVRELFEMARTKKA 303 (467)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 778899999988876654
No 159
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.06 E-value=50 Score=28.52 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004310 56 ACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKG 126 (762)
Q Consensus 56 ~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkG 126 (762)
.+|+.+|..+..+...|.-+.. .+....+.++.+|..|...|...=|++.-++.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~d-----------------n~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrk 56 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERD-----------------NLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 56 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666665555444 34566677888898898888888888877664
No 160
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=40.06 E-value=6.6 Score=40.47 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=17.9
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.. .++..++||||||.+.
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 3445566632 3567799999999874
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.81 E-value=6.7 Score=40.36 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=13.7
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|+-||+.|+|||+.+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 889999999999776
No 162
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.80 E-value=9.4 Score=44.93 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=24.2
Q ss_pred hhHHHhccchhhhhhccCcc------eeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVLDGYN------VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svldGyN------~~IfAYGqTGSGKTyTM 220 (762)
|..+...+...+..+..|.. +.|+-||++|+|||+..
T Consensus 496 q~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 496 QDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 55555444444444444443 26899999999999876
No 163
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=39.76 E-value=7.8 Score=42.28 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=18.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..+++|.+ ++..|+||||||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445566655 566789999999875
No 164
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=39.72 E-value=7.2 Score=41.50 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.4
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 165
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.67 E-value=1.8e+02 Score=24.95 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 481 KETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 481 ~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+++.+.+.....++.+|.+.+..++.|..+++.++.++.+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666777777777777777777777666655
No 166
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=39.52 E-value=7.1 Score=44.99 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.8
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3467889999999999873
No 167
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=39.19 E-value=9.6 Score=36.63 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=18.6
Q ss_pred hhhhhhcc-Ccc--eeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLD-GYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svld-GyN--~~IfAYGqTGSGKTyTM 220 (762)
+.++.++. |.. ..+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34555554 332 34566899999999876
No 168
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=39.01 E-value=7.2 Score=41.88 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..++..|+||||||+++
T Consensus 36 ~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 34566799999999887
No 169
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.53 E-value=7.7 Score=44.62 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=19.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4455677876 577799999999875
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.42 E-value=8 Score=39.38 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.0
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|.-..++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 343333888999999999876
No 171
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=38.31 E-value=12 Score=43.63 Aligned_cols=46 Identities=35% Similarity=0.543 Sum_probs=31.4
Q ss_pred eecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCC
Q 004310 172 FKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 172 F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G 222 (762)
|.+... .|...|..-++. ++..+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 444443 788888777654 45555566432 34679999999999963
No 172
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.10 E-value=1.4e+02 Score=36.93 Aligned_cols=9 Identities=22% Similarity=0.136 Sum_probs=4.4
Q ss_pred CceEEEecC
Q 004310 294 GLTEAQVYG 302 (762)
Q Consensus 294 gLte~~V~S 302 (762)
|.|.+.+..
T Consensus 745 G~TKVF~r~ 753 (1080)
T 2dfs_A 745 GKTKIFFRA 753 (1080)
T ss_dssp CSSEEEECT
T ss_pred ccccchhcc
Confidence 455555443
No 173
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=38.03 E-value=9.1 Score=37.94 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=17.3
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+++.+-.|--++ -.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 444454555444 4799999999876
No 174
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=37.92 E-value=7.4 Score=42.31 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.4
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
.+.-++.+|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4667889999999999886
No 175
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.92 E-value=1e+02 Score=27.96 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004310 48 ALPILQKIACLSSEIENLKRDHTSLLHHVKS 78 (762)
Q Consensus 48 ~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~ 78 (762)
..-+-.-|.+|+.+|..+..+...|.-++..
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn 45 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDN 45 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666778888888777777776666553
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.90 E-value=6.2 Score=44.34 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57889999999999876
No 177
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=37.90 E-value=11 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.4
Q ss_pred hccCcceeEEeeccCCCCCcccc
Q 004310 198 VLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 198 vldGyN~~IfAYGqTGSGKTyTM 220 (762)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 456776 467889999999874
No 178
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=37.89 E-value=8 Score=40.98 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999765
No 179
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.88 E-value=3e+02 Score=30.22 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=20.6
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHhcC
Q 004310 372 GERLKESQFINKSLSALGDVISALASK 398 (762)
Q Consensus 372 g~rlkEa~~INkSLsaLg~VI~ALa~k 398 (762)
..-++--..+.++|..|.+.+..|.+.
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn~ 53 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATNS 53 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 344556667899999999999988653
No 180
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=37.79 E-value=4.9 Score=41.81 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-||++|+|||+.+
T Consensus 47 ~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCEEEESCCCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35788999999999876
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=37.46 E-value=8.8 Score=42.38 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=20.4
Q ss_pred hhccCcceeEEeeccCCCCCcccc
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+++|++..|.-.|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 468999999999999999999865
No 182
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=37.25 E-value=8.2 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999776
No 183
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=37.20 E-value=8.1 Score=42.63 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 181 EDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 181 ~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..|.+.+..+.. .+.+| +..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~---~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMK---AIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHH---HHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHH---HHhcC-CCEEEEEeCCCCCHHHHH
Confidence 4567777654322 22223 337889999999999876
No 184
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.17 E-value=73 Score=34.05 Aligned_cols=9 Identities=11% Similarity=0.763 Sum_probs=6.4
Q ss_pred ceeeecccc
Q 004310 736 KTLVWSPLK 744 (762)
Q Consensus 736 ~~~~~~~~~ 744 (762)
..|+|.+.+
T Consensus 285 ~GI~W~~w~ 293 (323)
T 1lwu_C 285 DGIIWATWH 293 (323)
T ss_dssp CSSEEGGGS
T ss_pred CceEEccCC
Confidence 568898763
No 185
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=37.04 E-value=15 Score=39.21 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.4
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778899999999887
No 186
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.03 E-value=82 Score=34.49 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 487 QDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 487 ~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
+.++..++.+..++++.++.++.+++++++++.++.
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555544
No 187
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=36.97 E-value=9.2 Score=40.55 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=18.1
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..+++| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34556677 45567899999998763
No 188
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.86 E-value=1.2e+02 Score=25.46 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 473 AEKLKQDEKETKKLQDNLQSVQLRLAAREH 502 (762)
Q Consensus 473 ~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~ 502 (762)
.++++..+.+...|+..++.++.++.....
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554433
No 189
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.59 E-value=1.1e+02 Score=30.32 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 474 EKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 474 e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~e 520 (762)
+.+......+.+|+.++..+..++..++..++.|++++..++++...
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34556666778888888888888888888888888888888777754
No 190
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.50 E-value=11 Score=44.13 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47899999999999876
No 191
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=36.28 E-value=10 Score=42.88 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=19.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
+|..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 55566744444567888999999986
No 192
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.06 E-value=62 Score=27.71 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004310 475 KLKQDEKETKKLQDNLQSVQLRLAARE 501 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~lq~~l~~~e 501 (762)
+++..+.....|+..+..++.++....
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344444444445555555544444333
No 193
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.04 E-value=3e+02 Score=26.33 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=30.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc
Q 004310 475 KLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL--AEERKTRIKQETRAFAATS 537 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql--~eer~~~~~~e~~~~~~~~ 537 (762)
.+...+.++..++..+..+...+.++...+..++.++..|.-++ .+.+..+++.|...+...+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555444433332 2344555555555554444
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=35.90 E-value=11 Score=36.21 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=20.8
Q ss_pred hhhhhhcc-Ccc--eeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLD-GYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svld-GyN--~~IfAYGqTGSGKTyTM 220 (762)
+-++.++. |.. ..+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45666665 443 46888999999999776
No 195
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.73 E-value=2.3e+02 Score=27.48 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 469 YKQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQE 509 (762)
Q Consensus 469 ~k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e 509 (762)
+..+.++++.+-+...+++....++...+...+..++.|++
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~ 55 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQE 55 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444444444444444433333333333
No 196
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=35.66 E-value=9.7 Score=43.75 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=18.5
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++..+++|.| ++..++||||||...
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Confidence 3445667877 467789999999753
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.35 E-value=11 Score=44.95 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=23.5
Q ss_pred hhHHHhccchhhhhhccCcc------eeEEeeccCCCCCcccc
Q 004310 184 QEAVFAQTKPVVTSVLDGYN------VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 184 Q~eVf~~~~plV~svldGyN------~~IfAYGqTGSGKTyTM 220 (762)
|......+...|..+..|.. ..|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 34444444444444444421 58899999999999876
No 198
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=35.30 E-value=2.5e+02 Score=26.88 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 477 KQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKT 524 (762)
Q Consensus 477 k~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~ 524 (762)
...+.+++.|...+.....+....+..+..|+..+.+|+..|..++..
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek 120 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888888888888999999998888876443
No 199
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=35.11 E-value=12 Score=42.58 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.2
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
++.++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 5567888999999999985
No 200
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.07 E-value=2.1e+02 Score=24.41 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 496 RLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 496 ~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
.+..|......|+.++.+|+.+|++..
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 46 TLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788889999999988887753
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=34.77 E-value=11 Score=36.76 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666899999999876
No 202
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=34.63 E-value=2e+02 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.362 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 004310 495 LRLAAREHICRALQEKVKDLENQLAEER--KTRIKQETRA 532 (762)
Q Consensus 495 ~~l~~~e~~~~~l~e~~~~Le~ql~eer--~~~~~~e~~~ 532 (762)
.++.+.+.....|++++..++++|++.+ ...++.|...
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666666665543 3333344433
No 203
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.47 E-value=1.8e+02 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVK 77 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~ 77 (762)
.-|..|+.+|..|+.++..+..+.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888877777777766
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=34.36 E-value=9.4 Score=39.87 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=16.6
Q ss_pred hhccCcceeEEeeccCCCCCcccc
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+++|++..|...|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 368899999999999999999765
No 205
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=34.35 E-value=12 Score=39.14 Aligned_cols=17 Identities=47% Similarity=0.739 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|.-.|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35566799999999998
No 206
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.25 E-value=10 Score=34.97 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35888999999999743
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=34.02 E-value=16 Score=40.53 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=25.4
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.||.|.+. ++.... +++.+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~i~~---l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHHHHH---HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46666553 333332 3333333444567889999999998774
No 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=33.95 E-value=9.8 Score=36.10 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999765
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=33.86 E-value=9.8 Score=35.82 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.+|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999765
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=33.47 E-value=9.6 Score=38.85 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=16.2
Q ss_pred eeEEeeccCCCCCccccC
Q 004310 204 VCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~ 221 (762)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568999999999999985
No 211
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=33.44 E-value=10 Score=36.13 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.5
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 212
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=33.43 E-value=11 Score=44.42 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 186 AVFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 186 eVf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||..+...-..+ -++.|-||+.-|.+|||||.+.
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 3565443322222 3799999999999999999875
No 213
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.43 E-value=1.7e+02 Score=32.81 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 488 DNLQSVQLRLAAREHICRALQEKVKDLENQLAEERK 523 (762)
Q Consensus 488 ~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~ 523 (762)
.+++..+.+..+.++..+.+++++.+++.++++.++
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhh
Confidence 334444444444455555555666666666655433
No 214
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=33.36 E-value=1.6e+02 Score=25.98 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 58 LSSEIENLKRDHTSLLHHVKSISTDS-FPG-PDVLDTLRLLSNEHELLKKKYVDVSSERKQ 116 (762)
Q Consensus 58 l~~~i~~lk~e~~~l~~~~~~~~~~~-~~~-~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~ 116 (762)
...+.+.|+.|+..|+.|...+...+ |++ .-+.+.++.+.++++.++..+......-..
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQA 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888877554331 111 115566777778888877777665544433
No 215
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=33.33 E-value=11 Score=35.32 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999643
No 216
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.27 E-value=2.6e+02 Score=24.81 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 481 KETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQL 518 (762)
Q Consensus 481 ~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql 518 (762)
.++.+|+..+..-+..-...+.....+..++.+|...|
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333444444444444444433
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=33.17 E-value=13 Score=36.29 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=19.2
Q ss_pred hhhhhhccC-c--ceeEEeeccCCCCCcccc
Q 004310 193 PVVTSVLDG-Y--NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 193 plV~svldG-y--N~~IfAYGqTGSGKTyTM 220 (762)
+-++.++.| . ...+.-+|++|||||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345555533 3 335778999999999875
No 218
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=33.15 E-value=1.7e+02 Score=26.65 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 496 RLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 496 ~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
.+..|......|+.++.+|+.+|++.
T Consensus 63 tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 63 TLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888664
No 219
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.88 E-value=2.8e+02 Score=30.09 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 482 ETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRAFA 534 (762)
Q Consensus 482 e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~~~ 534 (762)
.+.+.++++..++.+...++.-...|++.++.-..| ++.+.+.++.|+..+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 456 (471)
T 3mq9_A 405 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-GQKKVEELEGEITTLN 456 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444555555555555555556666655554444 3345555555554443
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=32.57 E-value=11 Score=42.43 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=16.0
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
....|+-||++|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 4457999999999999865
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=32.48 E-value=14 Score=41.83 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.2
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 6777899999999887
No 222
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.16 E-value=12 Score=35.18 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+..|..|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999754
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=32.12 E-value=12 Score=39.33 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.+|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35556699999999988
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=32.05 E-value=11 Score=38.76 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=15.7
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557788899999999776
No 225
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=31.77 E-value=12 Score=34.72 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999654
No 226
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=31.76 E-value=12 Score=44.64 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 186 AVFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 186 eVf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||+.+...-..+ -++.|-||+.-|.+|||||.+.
T Consensus 122 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 3565443333332 3799999999999999999775
No 227
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=31.75 E-value=18 Score=36.31 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|+.|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999653
No 228
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=31.75 E-value=12 Score=44.54 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.7
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 799999999999999999875
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=31.73 E-value=11 Score=36.55 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999877
No 230
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.61 E-value=11 Score=39.46 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.+|.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677899999999988
No 231
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=31.49 E-value=13 Score=41.75 Aligned_cols=47 Identities=30% Similarity=0.379 Sum_probs=28.0
Q ss_pred eeeecCeeeCCCCChhHHHhccchhhhhh-----ccC----cceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQTKPVVTSV-----LDG----YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~~plV~sv-----ldG----yN~~IfAYGqTGSGKTyTM 220 (762)
..++||.|.+.+. +-+++..++..+ +.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~----~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEE----AIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHH----HHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHH----HHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3567888776543 333333333322 111 2245899999999999875
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=31.44 E-value=12 Score=35.65 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999765
No 233
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=31.41 E-value=16 Score=39.83 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999874
No 234
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.35 E-value=12 Score=43.16 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=14.5
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++..|+.|||||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 46779999999999974
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=31.28 E-value=14 Score=36.20 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=9.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999876
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.17 E-value=12 Score=36.08 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.95 E-value=16 Score=43.70 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=30.9
Q ss_pred eeeecCeeeCCCCChhHHHhcc-chhhh-hhcc----CcceeEEeeccCCCCCcccc
Q 004310 170 KQFKFDYVFKPEDNQEAVFAQT-KPVVT-SVLD----GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 170 k~F~FD~VF~~~~tQ~eVf~~~-~plV~-svld----GyN~~IfAYGqTGSGKTyTM 220 (762)
..+.||.|.+.+..-+.+.+.+ .|+.. .++. ....+|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3577888877666555555443 22211 1222 22346889999999999766
No 238
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.88 E-value=1.3e+02 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 475 KLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQ 517 (762)
Q Consensus 475 ~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~q 517 (762)
.+...+..+.-+.+.++.+...+...+..+..|+.++..|.++
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444333
No 239
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=30.87 E-value=15 Score=45.05 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=18.0
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
+|..+++|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677765 67899999999954
No 240
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=30.73 E-value=13 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred ccCcceeEEeeccCCCCCcccc
Q 004310 199 LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 199 ldGyN~~IfAYGqTGSGKTyTM 220 (762)
-++.|-||+..|.+|||||.+.
T Consensus 168 ~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 168 DDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHTCCEEEEEEESTTSSHHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchHH
Confidence 3799999999999999999774
No 241
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.64 E-value=2.8e+02 Score=24.36 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 474 EKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 474 e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
.+++..+....+...++..++.++...+..+..+++.+.+....|.+..
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555444443
No 242
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=30.61 E-value=13 Score=44.84 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 187 VFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 187 Vf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
||..+...-..+ -++.|-||+..|.+|||||.+.
T Consensus 152 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 152 LFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 555433322222 3799999999999999999875
No 243
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.03 E-value=17 Score=35.07 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|.-.|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888899999999776
No 244
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.00 E-value=12 Score=36.46 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
++.-+|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999998773
No 245
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=29.98 E-value=14 Score=44.30 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=24.4
Q ss_pred HHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 187 VFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 187 Vf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
||..+...-..+ -++.|-||+.-|.+|||||.+.
T Consensus 139 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 139 IFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 555433322232 3799999999999999999764
No 246
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=29.89 E-value=14 Score=45.39 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=24.7
Q ss_pred HHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 187 VFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 187 Vf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
||..+...-..+ -++.|-||+.-|.+|||||.+.
T Consensus 129 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 129 VYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 555433322222 3799999999999999999886
No 247
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.64 E-value=2.7e+02 Score=23.91 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 468 KYKQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKT 524 (762)
Q Consensus 468 ~~k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~ 524 (762)
+.++.++.+.....++.+|+.+...+.....+.......+..+...|.++...+...
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 248
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.57 E-value=13 Score=35.15 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999876
No 249
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=29.50 E-value=12 Score=40.04 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=14.8
Q ss_pred ccCcceeEEeeccCCCCCcccc
Q 004310 199 LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 199 ldGyN~~IfAYGqTGSGKTyTM 220 (762)
-.|.+++ -.|+||||||+++
T Consensus 173 ~~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEE--EEESSSSCHHHHH
T ss_pred hcCCEEE--EECCCCCCHHHHH
Confidence 3566544 4599999999877
No 250
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=29.47 E-value=12 Score=39.59 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=14.6
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|. .+.-.|+||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 454 4556799999999876
No 251
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.38 E-value=4e+02 Score=25.82 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 004310 505 RALQEKVKDL 514 (762)
Q Consensus 505 ~~l~e~~~~L 514 (762)
+.|++++.+|
T Consensus 121 r~L~Ekl~~l 130 (168)
T 3o0z_A 121 KEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 252
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=29.38 E-value=14 Score=44.08 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.1
Q ss_pred ccCcceeEEeeccCCCCCcccc
Q 004310 199 LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 199 ldGyN~~IfAYGqTGSGKTyTM 220 (762)
-++.|-||+.-|.+|||||.+.
T Consensus 167 ~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 167 TDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hhCCCceEEEeCCCCCCCchHH
Confidence 3799999999999999999875
No 253
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.33 E-value=2.9e+02 Score=24.42 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 496 RLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 496 ~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
.+..|......|+.++.+|+.+|++..
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 46 TLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888899988888887643
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=29.07 E-value=16 Score=35.34 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=14.6
Q ss_pred cceeEEeeccCCCCCcccc
Q 004310 202 YNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 202 yN~~IfAYGqTGSGKTyTM 220 (762)
..-.|.-.|++|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3345667799999999766
No 255
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=29.03 E-value=18 Score=39.85 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
-++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3567799999999873
No 256
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.78 E-value=15 Score=43.34 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.1
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4556678877 466789999999774
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=28.71 E-value=15 Score=35.26 Aligned_cols=16 Identities=44% Similarity=0.470 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999654
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=28.67 E-value=16 Score=34.11 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999754
No 259
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=28.63 E-value=9.9 Score=38.34 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCccccCC
Q 004310 204 VCIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM~G 222 (762)
..++-||..|||||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4678899999999988753
No 260
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=28.58 E-value=22 Score=41.06 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=19.4
Q ss_pred hhhhccCcceeEEeeccCCCCCcccc
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..++.|.|+ +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 6677788775 67789999999874
No 261
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=28.55 E-value=9.6 Score=36.82 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++-||..|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998874
No 262
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=28.53 E-value=14 Score=44.11 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 179 KPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 179 ~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..-|.+++.. +....-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~---I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQE---IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHH---HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHH---HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 456667777654 333344566567888999999999765
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=28.44 E-value=14 Score=35.82 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999876
No 264
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=28.43 E-value=13 Score=43.37 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=15.9
Q ss_pred hccCcceeEEeeccCCCCCcccc
Q 004310 198 VLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 198 vldGyN~~IfAYGqTGSGKTyTM 220 (762)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 445555 678899999999764
No 265
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=28.22 E-value=15 Score=45.24 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.7
Q ss_pred HHHhccchhhhhh-ccCcceeEEeeccCCCCCcccc
Q 004310 186 AVFAQTKPVVTSV-LDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 186 eVf~~~~plV~sv-ldGyN~~IfAYGqTGSGKTyTM 220 (762)
.||+.+...-..+ -++.|-||+.-|.+|||||.+.
T Consensus 126 HIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 126 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 4666543333333 3799999999999999999775
No 266
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.01 E-value=2.7e+02 Score=27.06 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004310 56 ACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIEL 124 (762)
Q Consensus 56 ~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~el 124 (762)
.+...+...++.+....+.+++.+-....++ ...++.+.++..+|+.++.. +|-+..+++.+.
T Consensus 81 ~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~D---eakI~aL~~Ei~~Lr~qL~~---~R~k~~~em~Ke 143 (175)
T 3lay_A 81 DDYYTQTSALRQQLISKRYEYNALLTASSPD---TAKINAVAKEMESLGQKLDE---QRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 4456666677777777777777655433333 35677778888888776654 556677777666
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.84 E-value=14 Score=36.00 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|+.|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999887
No 268
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=27.77 E-value=18 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=15.9
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
++....|.-.|..|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 444567888999999999653
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.70 E-value=16 Score=33.80 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999754
No 270
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=27.62 E-value=16 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.1
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 4556678877 466789999999874
No 271
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=27.56 E-value=8.5 Score=43.36 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=18.6
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+|..+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 45567788875 55679999999854
No 272
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.50 E-value=1.7e+02 Score=26.49 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 004310 55 IACLSSEIENLKRDHTSLLHHVK 77 (762)
Q Consensus 55 ~~~l~~~i~~lk~e~~~l~~~~~ 77 (762)
+..|+.+|..|+.....|...+.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 273
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=27.48 E-value=15 Score=34.43 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5677899999999765
No 274
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=27.27 E-value=23 Score=41.15 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=51.3
Q ss_pred eeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCC---CCCCch----hhhHHHHHHHhhc
Q 004310 171 QFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP---ENRGVN----YRTLEELFRVSKH 243 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~---~~~GIi----pRal~~LF~~~~~ 243 (762)
.|....=|.|...|..-++. ++..+-+|... ....|.|||||||||-.-- ..+-|+ .....+|+..+..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 47777778999999888764 45555566432 3557999999999996310 111111 1234445554443
Q ss_pred cCCceeEEEEEEEEEEEc
Q 004310 244 RNGIMRYELFVSMLEVYN 261 (762)
Q Consensus 244 ~~~~~~~~V~vS~lEIYN 261 (762)
--+......+.||+.-|.
T Consensus 80 ~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 80 FFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HCTTSEEEEECCCEEEEE
T ss_pred HcCCCcEEEccccccccC
Confidence 322234556667665554
No 275
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=27.26 E-value=12 Score=41.10 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=17.6
Q ss_pred hhhhccCcceeEEeeccCCCCCccccC
Q 004310 195 VTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 195 V~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
|..++.|.+ ++..|+||||||.+..
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 344555644 4667999999998863
No 276
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=27.00 E-value=19 Score=36.19 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=18.7
Q ss_pred hhccCcceeEEeeccCCCCCcccc
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM 220 (762)
++++-+...|+-.|+||||||...
T Consensus 28 ~~v~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 28 VLVDIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEEEETTEEEEEECCCTTTTHHHH
T ss_pred EEEEECCEEEEEECCCCCCHHHHH
Confidence 445666677899999999998654
No 277
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.62 E-value=3.2e+02 Score=23.80 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 474 EKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEER 522 (762)
Q Consensus 474 e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer 522 (762)
.+++..+....++..++..++.++...+......++.+.+....|.+..
T Consensus 30 ~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 30 ADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555554443
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.58 E-value=15 Score=36.14 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.3
Q ss_pred EEeeccCCCCCcccc
Q 004310 206 IFAYGQTGTGKTFTM 220 (762)
Q Consensus 206 IfAYGqTGSGKTyTM 220 (762)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 279
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.57 E-value=2.7e+02 Score=23.53 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAR----EHICRALQEKVKDLENQLAE 520 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~----e~~~~~l~e~~~~Le~ql~e 520 (762)
++.+.+|...++.+|.+++.. +..-..|+.++..||.++..
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556666666666665533 33334455556666665544
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=26.57 E-value=17 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999754
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.50 E-value=16 Score=39.56 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.+|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999988
No 282
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=26.37 E-value=16 Score=35.25 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=20.2
Q ss_pred chhhhhhcc-Ccc--eeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLD-GYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svld-GyN--~~IfAYGqTGSGKTyTM 220 (762)
-+-++.++. |.. -.+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 345566663 433 35778899999999876
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=26.29 E-value=16 Score=36.84 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.5
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999963
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=26.00 E-value=17 Score=33.83 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
+|+-.|..|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999999765
No 285
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=26.00 E-value=22 Score=39.60 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.1
Q ss_pred CcceeEEeeccCCCCCccccC
Q 004310 201 GYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 201 GyN~~IfAYGqTGSGKTyTM~ 221 (762)
+....|+..|.+|+|||+|..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHH
Confidence 334678889999999999983
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=25.87 E-value=19 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=14.5
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|.-.|.+|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456777899999999765
No 287
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.69 E-value=18 Score=36.96 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999876
No 288
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=25.64 E-value=17 Score=42.65 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=16.4
Q ss_pred hhccCcceeEEeeccCCCCCccc
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyT 219 (762)
..++|.+ |+..|+||||||+.
T Consensus 151 r~l~rk~--vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 151 RAMQRKI--IFHSGPTNSGKTYH 171 (677)
T ss_dssp HTSCCEE--EEEECCTTSSHHHH
T ss_pred HhcCCCE--EEEEcCCCCCHHHH
Confidence 4567754 68889999999984
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.49 E-value=21 Score=39.55 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+..|.+|+|||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455666799999999987
No 290
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=25.47 E-value=1.8e+02 Score=25.47 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHH
Q 004310 55 IACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKK 106 (762)
Q Consensus 55 ~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 106 (762)
+..|..+|+.++.+-..|.+++..+..+ ...+...|..+..+.+.|...
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke---~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKN---RKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhH
Confidence 3567888888888888888888865543 133555666666666665543
No 291
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=25.45 E-value=21 Score=43.97 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=17.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTF 218 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTy 218 (762)
.+..+++|.| +++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3455678876 5677899999994
No 292
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.32 E-value=19 Score=42.22 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=25.9
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.||.|++. ++.... +++.+.......++-||++|+|||+.+.
T Consensus 184 ~~d~~iGr----~~~i~~---l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 184 GIDPLIGR----EKELER---AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCCCCSC----HHHHHH---HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred CCCCccCC----HHHHHH---HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 45665553 333322 3333334455567889999999998874
No 293
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.27 E-value=3.7e+02 Score=24.13 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 471 QMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 471 ~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
.+...+.+...++..|..++..++......+....-+..|++++|--.++.
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777777777777777777777777777776665553
No 294
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=25.12 E-value=17 Score=38.28 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=15.2
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...|+-.|++|||||+|+
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 346778899999999988
No 295
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=24.91 E-value=17 Score=42.09 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.2
Q ss_pred ceeEEeeccCCCCCccccC
Q 004310 203 NVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM~ 221 (762)
++.++..|..|||||+|+.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp SSEEEECCCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHH
Confidence 4567788999999999996
No 296
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.89 E-value=19 Score=33.54 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999653
No 297
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=24.69 E-value=15 Score=35.19 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=18.4
Q ss_pred chhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+|..+-.|.. |.-.|.+|||||+..
T Consensus 12 ~~~~~~~~~~~~--i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 12 SGLVPRGSKTFI--IGISGVTNSGKTTLA 38 (207)
T ss_dssp --CCCCSCCCEE--EEEEESTTSSHHHHH
T ss_pred ccccccCCCCeE--EEEECCCCCCHHHHH
Confidence 456666666754 556799999999654
No 298
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.67 E-value=3.4e+02 Score=23.49 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 469 YKQMAEKLKQDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERKTRI 526 (762)
Q Consensus 469 ~k~~~e~lk~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~~~~ 526 (762)
+...+++++..|.+.+.|..++..++.+-. ......++..+.+|..++.....++.
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~ 73 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKA 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777877777766665422 23445567778888877777544443
No 299
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.56 E-value=19 Score=43.01 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++..|+.|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 46789999999999974
No 300
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=24.43 E-value=18 Score=36.65 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=17.2
Q ss_pred cCcceeEEeeccCCCCCcccc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM 220 (762)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999655
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.35 E-value=19 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999754
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=24.29 E-value=20 Score=33.43 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 303
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.27 E-value=30 Score=40.59 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=25.5
Q ss_pred ecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccC
Q 004310 173 KFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 173 ~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.||.|.+. ++.... +++.+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG~----~~~i~~---l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIGR----SKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCCC----HHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----hHHHHH---HHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 45655553 333332 3333334555568889999999997763
No 304
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.25 E-value=1.5e+02 Score=23.32 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSIS 80 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~ 80 (762)
.++..|..+++.|..+...|..++..+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888887777777777543
No 305
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.25 E-value=3e+02 Score=23.50 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 004310 495 LRLAAREHICRALQEKVKDLENQLAEER--KTRIKQETRA 532 (762)
Q Consensus 495 ~~l~~~e~~~~~l~e~~~~Le~ql~eer--~~~~~~e~~~ 532 (762)
.++.+.+.....|++++..++.+|++.+ ...++.|...
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555666655555543 3333344433
No 306
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=24.07 E-value=13 Score=36.39 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=15.1
Q ss_pred eEEeeccCCCCCccccCC
Q 004310 205 CIFAYGQTGTGKTFTMEG 222 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~G 222 (762)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 578899999999987754
No 307
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=24.03 E-value=24 Score=32.73 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=10.0
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999754
No 308
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.87 E-value=2.1e+02 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004310 506 ALQEKVKDLENQLAEE 521 (762)
Q Consensus 506 ~l~e~~~~Le~ql~ee 521 (762)
.++..+..|+.+|...
T Consensus 79 ~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 79 DARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3444444455444443
No 309
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=23.58 E-value=18 Score=35.56 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999876
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.57 E-value=20 Score=32.95 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788899999999654
No 311
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=23.56 E-value=20 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999654
No 312
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.56 E-value=2.2e+02 Score=26.95 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004310 89 VLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKG 126 (762)
Q Consensus 89 ~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkG 126 (762)
-.+.|..|..|++...+++.+...+...++.++.++-+
T Consensus 90 Q~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888999999888888888777777777666543
No 313
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=23.53 E-value=19 Score=40.56 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=17.1
Q ss_pred hhhccCcceeEEeeccCCCCCcccc
Q 004310 196 TSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 196 ~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
..+..|. -|+-||++|+|||+..
T Consensus 36 ~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 36 LAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHhcCC--eeEeecCchHHHHHHH
Confidence 3344454 5678999999999876
No 314
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=23.49 E-value=20 Score=42.84 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++..|+.|||||+|+.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999974
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=23.49 E-value=19 Score=34.52 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999766
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=23.48 E-value=20 Score=33.92 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 317
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.39 E-value=1.5e+02 Score=27.48 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004310 89 VLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKG 126 (762)
Q Consensus 89 ~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkG 126 (762)
-.+.|..|..+++...+++.+...+...++..+.++-+
T Consensus 90 Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999999999999988887643
No 318
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=23.30 E-value=21 Score=33.14 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
...-||++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467899999999765
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.16 E-value=20 Score=35.64 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999765
No 320
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.85 E-value=3.7e+02 Score=24.50 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEERK 523 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~eer~ 523 (762)
..++..|+.+++.+.. +.+..+..|+.++..|+.+|++.+.
T Consensus 21 kreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 21 YREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555422 3445667777888888888877664
No 321
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.72 E-value=3e+02 Score=22.10 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004310 506 ALQEKVKDL 514 (762)
Q Consensus 506 ~l~e~~~~L 514 (762)
.|+.++..|
T Consensus 48 ~L~~E~~~L 56 (63)
T 1ci6_A 48 SLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 322
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.65 E-value=21 Score=33.34 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCccc
Q 004310 205 CIFAYGQTGTGKTFT 219 (762)
Q Consensus 205 ~IfAYGqTGSGKTyT 219 (762)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478889999999964
No 323
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=22.58 E-value=13 Score=43.17 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 180 PEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 180 ~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
+..-|.+++.. +++|.| ++..|+||||||...
T Consensus 26 l~~~Q~~~i~~-------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 26 LFPPQAEAVEK-------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCCHHHHHH-------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHH-------HhCCCc--EEEEcCCccHHHHHH
Confidence 33446666543 455665 577889999999765
No 324
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=22.51 E-value=28 Score=35.23 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHhccchhhhhhccCcc--eeEEeeccCCCCCcccc
Q 004310 186 AVFAQTKPVVTSVLDGYN--VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 186 eVf~~~~plV~svldGyN--~~IfAYGqTGSGKTyTM 220 (762)
+.+...-+-++.++.|+. .++.-+|+.|||||..+
T Consensus 11 ~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 11 EAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp HHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHH
T ss_pred HHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHH
Confidence 333333333444554543 35778999999999765
No 325
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.50 E-value=3.8e+02 Score=24.54 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004310 503 ICRALQEKVKDLENQLAE 520 (762)
Q Consensus 503 ~~~~l~e~~~~Le~ql~e 520 (762)
.++.|+.+|++|..+|++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555555544
No 326
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=22.49 E-value=34 Score=40.99 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=44.0
Q ss_pred eeecCeeeCCCCChhHHHhcc-chhhh-hhccCcc----eeEEeeccCCCCCccccC------CC-----------CCCC
Q 004310 171 QFKFDYVFKPEDNQEAVFAQT-KPVVT-SVLDGYN----VCIFAYGQTGTGKTFTME------GT-----------PENR 227 (762)
Q Consensus 171 ~F~FD~VF~~~~tQ~eVf~~~-~plV~-svldGyN----~~IfAYGqTGSGKTyTM~------G~-----------~~~~ 227 (762)
...||.|-+-+..-+++.+.+ -|+.. ..+.++. ..|+-||+.|+|||...- |. ....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 456777777666555555543 34332 3455544 369999999999996542 11 1223
Q ss_pred CchhhhHHHHHHHhhcc
Q 004310 228 GVNYRTLEELFRVSKHR 244 (762)
Q Consensus 228 GIipRal~~LF~~~~~~ 244 (762)
|-....++.+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 44456666777665543
No 327
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.38 E-value=21 Score=40.85 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=18.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCccccC
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTME 221 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM~ 221 (762)
.+..++.+ ..++-.|..|||||+++.
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHHH
Confidence 33444443 456778999999999873
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=22.30 E-value=23 Score=32.91 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999654
No 329
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=22.23 E-value=27 Score=40.86 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCccccC
Q 004310 205 CIFAYGQTGTGKTFTME 221 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM~ 221 (762)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 36788999999997653
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=22.23 E-value=23 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 331
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.10 E-value=4.1e+02 Score=30.50 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004310 501 EHICRALQEKVKDLENQLAEERKTRIKQETRAFAATS 537 (762)
Q Consensus 501 e~~~~~l~e~~~~Le~ql~eer~~~~~~e~~~~~~~~ 537 (762)
+.+.+.+++.++.|++.+.++++..+++-.+.++...
T Consensus 518 ~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~ 554 (592)
T 1f5n_A 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888888777766666555443
No 332
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.08 E-value=2e+02 Score=24.40 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004310 57 CLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELK 125 (762)
Q Consensus 57 ~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elk 125 (762)
.+..++.+|-.|+.+|..--..+.. .+.++...+++|..+.+.|+..+......|-++--.+.|+.
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnv---vk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNI---VKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888776553322 23557778899999999999999888888888777776654
No 333
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=21.98 E-value=20 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=18.2
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.|..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4455677765 57889999999965
No 334
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=21.91 E-value=22 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|.-.|..|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999765
No 335
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=21.87 E-value=21 Score=41.20 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
.-++..|.||||||+++
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 55788999999999887
No 336
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.49 E-value=2.1e+02 Score=30.50 Aligned_cols=26 Identities=12% Similarity=0.044 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004310 473 AEKLKQDEKETKKLQDNLQSVQLRLA 498 (762)
Q Consensus 473 ~e~lk~~e~e~~~L~~~l~~lq~~l~ 498 (762)
.+++.+.+..+.....+++.++..+.
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 33333333333333333444433333
No 337
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=21.47 E-value=29 Score=31.74 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=19.6
Q ss_pred hhhhhcc-CcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLD-GYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svld-GyN~~IfAYGqTGSGKTyTM 220 (762)
+++.++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3344554 45667888999999999655
No 338
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.47 E-value=21 Score=38.25 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=20.8
Q ss_pred hhccCcceeEEeeccCCCCCcccc
Q 004310 197 SVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 197 svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 457899999999999999999755
No 339
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.47 E-value=3.1e+02 Score=21.83 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004310 472 MAEKLKQDEKETKKLQDNLQSVQLRLAA 499 (762)
Q Consensus 472 ~~e~lk~~e~e~~~L~~~l~~lq~~l~~ 499 (762)
++...-....++..|+++...+...+.+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555444444444433
No 340
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=21.36 E-value=20 Score=36.59 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999776
No 341
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.34 E-value=22 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=18.4
Q ss_pred hhhhhccCcceeEEeeccCCCCCcccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.+..++.|.| ++..++||||||...
T Consensus 94 ai~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 94 AISCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHHH
Confidence 3444566766 677899999999763
No 342
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=21.24 E-value=24 Score=33.60 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999754
No 343
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.21 E-value=2.9e+02 Score=22.78 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCC-CCC-ccHHHHHHHHHHHHHHHHHHHHH
Q 004310 58 LSSEIENLKRDHTSLLHHVKSISTDS-FPG-PDVLDTLRLLSNEHELLKKKYVD 109 (762)
Q Consensus 58 l~~~i~~lk~e~~~l~~~~~~~~~~~-~~~-~~~~~~l~~l~~~~~~l~~~~~~ 109 (762)
...+.+.|+.|+..|+.+...++..+ |++ .-+.+.+..+.++++.+...+..
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667777888888888877554331 110 01445566666666666655543
No 344
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.19 E-value=4.1e+02 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 480 EKETKKLQDNLQSVQLRLAAREHICRALQEKVKDL 514 (762)
Q Consensus 480 e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~L 514 (762)
++++..+.+.++.++..+...+.....+++.+..+
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333
No 345
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.17 E-value=2.6e+02 Score=20.89 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 478 QDEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDL 514 (762)
Q Consensus 478 ~~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~L 514 (762)
+.+.++..|.++.+.+..+---..+.+.-|+.++..|
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianl 43 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3444555555554444443333333333344444333
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.13 E-value=25 Score=32.25 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999653
No 347
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.11 E-value=2.4e+02 Score=30.98 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 486 LQDNLQSVQLRLAAREHICRALQEKVKDLENQLAEE 521 (762)
Q Consensus 486 L~~~l~~lq~~l~~~e~~~~~l~e~~~~Le~ql~ee 521 (762)
|.+++.+++.+....++.++.+++++++++++|.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555443
No 348
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.01 E-value=25 Score=32.74 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4777899999999643
No 349
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.98 E-value=1.5e+02 Score=29.22 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 004310 510 KVKDLENQL 518 (762)
Q Consensus 510 ~~~~Le~ql 518 (762)
.+.+++..+
T Consensus 131 SleD~e~kl 139 (189)
T 2v71_A 131 SLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 350
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=20.92 E-value=23 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCCcccc
Q 004310 203 NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 203 N~~IfAYGqTGSGKTyTM 220 (762)
...++-||++|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 336788999999999776
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=20.90 E-value=23 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
++.-.|+.|||||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999876
No 352
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.89 E-value=23 Score=35.47 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
++.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999765
No 353
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.86 E-value=3.4e+02 Score=23.70 Aligned_cols=60 Identities=13% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-CCCccHHHH--------------HHHHHHHHHHHHHHHHHH
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVKSISTDS-FPGPDVLDT--------------LRLLSNEHELLKKKYVDV 110 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~-~~~~~~~~~--------------l~~l~~~~~~l~~~~~~e 110 (762)
+...+.+++..|+..+..+..+.+.+..+...+ +.-.++... +..+.++.+.+++.|...
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999998888877644322 221223333 344455566666666654
No 354
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=20.77 E-value=34 Score=32.22 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=22.4
Q ss_pred chhhhhhccCcceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLDGYNVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svldGyN~~IfAYGqTGSGKTyTM 220 (762)
.++.+..+.-...-|...|.+|+|||..+
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHH
Confidence 45666666666777999999999999654
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=20.75 E-value=24 Score=32.72 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999753
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.70 E-value=25 Score=32.88 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999754
No 357
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.68 E-value=4e+02 Score=22.76 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004310 479 DEKETKKLQDNLQSVQLRLAAREHICRALQEKVKDL 514 (762)
Q Consensus 479 ~e~e~~~L~~~l~~lq~~l~~~e~~~~~l~e~~~~L 514 (762)
.++++.+++..++.........+..+..+.++..+|
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333333333
No 358
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.45 E-value=2.6e+02 Score=27.60 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004310 55 IACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVI 122 (762)
Q Consensus 55 ~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~ 122 (762)
+..|+.+|..|+..+..|...+.++... .++++...+.....++.+..+|.......--|-+++.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~---NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQA---NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333221 1223333344444444455555544333333333333
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.36 E-value=26 Score=33.37 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999999754
No 360
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.35 E-value=37 Score=32.85 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=20.4
Q ss_pred chhhhhhcc-Cc--ceeEEeeccCCCCCcccc
Q 004310 192 KPVVTSVLD-GY--NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 192 ~plV~svld-Gy--N~~IfAYGqTGSGKTyTM 220 (762)
-+-++.++. |+ ...+.-+|.+|+|||.-+
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 345677775 44 335778999999999543
No 361
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.31 E-value=34 Score=35.81 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=16.7
Q ss_pred ccCc-ceeEEeeccCCCCCcccc
Q 004310 199 LDGY-NVCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 199 ldGy-N~~IfAYGqTGSGKTyTM 220 (762)
-.|. .-.++-||+.|+|||.+.
T Consensus 19 ~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 19 QAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HTTCCCSEEEEECCTTSCHHHHH
T ss_pred HcCCcceeEEEECCCCchHHHHH
Confidence 3443 346888999999999875
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=20.25 E-value=25 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 004310 205 CIFAYGQTGTGKTFTM 220 (762)
Q Consensus 205 ~IfAYGqTGSGKTyTM 220 (762)
.|+-.|..|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999754
No 363
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=20.20 E-value=27 Score=35.26 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCcccc
Q 004310 204 VCIFAYGQTGTGKTFTM 220 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyTM 220 (762)
..|+-.|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36888999999999754
No 364
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.14 E-value=30 Score=36.85 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=13.4
Q ss_pred eeEEeeccCCCCCccc
Q 004310 204 VCIFAYGQTGTGKTFT 219 (762)
Q Consensus 204 ~~IfAYGqTGSGKTyT 219 (762)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688899999999963
No 365
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.13 E-value=1.5e+02 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004310 51 ILQKIACLSSEIENLKRDHTSLLHHVK 77 (762)
Q Consensus 51 ~~~~~~~l~~~i~~lk~e~~~l~~~~~ 77 (762)
+-.+|.+|..+-..|+.+...|..++.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544444444
No 366
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=20.02 E-value=30 Score=42.81 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=18.5
Q ss_pred hhhhhccCcceeEEeeccCCCCCccc
Q 004310 194 VVTSVLDGYNVCIFAYGQTGTGKTFT 219 (762)
Q Consensus 194 lV~svldGyN~~IfAYGqTGSGKTyT 219 (762)
.+..++.|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4556677876 57888999999983
Done!