Query 004311
Match_columns 762
No_of_seqs 474 out of 2962
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 21:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 4E-151 8E-156 1212.7 53.4 685 67-755 34-721 (721)
2 COG0480 FusA Translation elong 100.0 9E-143 2E-147 1224.7 73.5 684 69-760 7-696 (697)
3 PRK00007 elongation factor G; 100.0 6E-132 1E-136 1166.4 79.7 683 68-756 6-692 (693)
4 PRK12739 elongation factor G; 100.0 1E-131 3E-136 1164.1 78.6 683 68-756 4-689 (691)
5 TIGR00484 EF-G translation elo 100.0 5E-131 1E-135 1160.5 80.6 682 67-755 5-688 (689)
6 PRK13351 elongation factor G; 100.0 4E-127 8E-132 1131.0 79.2 679 68-753 4-686 (687)
7 PRK12740 elongation factor G; 100.0 2E-120 5E-125 1071.7 77.3 665 78-752 1-667 (668)
8 PLN00116 translation elongatio 100.0 2E-118 5E-123 1067.0 62.8 674 67-760 14-828 (843)
9 PTZ00416 elongation factor 2; 100.0 6E-117 1E-121 1052.8 64.5 669 68-760 15-821 (836)
10 TIGR00490 aEF-2 translation el 100.0 1E-113 3E-118 1013.6 60.8 635 68-760 15-716 (720)
11 PRK07560 elongation factor EF- 100.0 6E-113 1E-117 1010.7 59.2 642 68-760 16-718 (731)
12 KOG0464 Elongation factor G [T 100.0 1E-110 3E-115 858.6 32.4 672 68-755 33-749 (753)
13 KOG0469 Elongation factor 2 [T 100.0 1E-103 3E-108 823.2 27.9 669 68-759 15-826 (842)
14 KOG0468 U5 snRNP-specific prot 100.0 8.6E-87 1.9E-91 716.4 36.6 668 67-752 123-915 (971)
15 TIGR01394 TypA_BipA GTP-bindin 100.0 2.3E-84 5E-89 742.7 50.3 452 72-749 1-477 (594)
16 PRK10218 GTP-binding protein; 100.0 1E-82 2.2E-87 727.4 51.4 452 70-747 3-480 (607)
17 PRK05433 GTP-binding protein L 100.0 1.8E-82 3.9E-87 730.0 51.5 459 69-743 4-481 (600)
18 TIGR01393 lepA GTP-binding pro 100.0 2.8E-81 6E-86 719.5 52.2 458 70-743 1-478 (595)
19 PRK00741 prfC peptide chain re 100.0 3.6E-79 7.8E-84 691.7 48.2 450 69-550 7-473 (526)
20 KOG0467 Translation elongation 100.0 3.8E-80 8.2E-85 678.0 36.1 643 67-747 4-832 (887)
21 TIGR00503 prfC peptide chain r 100.0 6.6E-76 1.4E-80 665.2 47.0 450 68-548 7-472 (527)
22 KOG0462 Elongation factor-type 100.0 7.5E-75 1.6E-79 618.0 37.7 462 68-743 56-534 (650)
23 COG0481 LepA Membrane GTPase L 100.0 1E-73 2.2E-78 599.7 37.5 461 68-744 5-485 (603)
24 COG1217 TypA Predicted membran 100.0 4.7E-72 1E-76 585.3 37.4 453 70-748 3-480 (603)
25 COG4108 PrfC Peptide chain rel 100.0 7E-63 1.5E-67 514.5 34.1 450 68-545 8-470 (528)
26 cd01886 EF-G Elongation factor 100.0 1.9E-51 4.1E-56 430.4 31.5 270 74-346 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 3.8E-47 8.2E-52 397.7 29.5 265 71-346 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 1.4E-44 3E-49 381.2 30.6 268 74-346 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 1.3E-43 2.9E-48 365.0 27.1 237 74-346 1-237 (237)
30 COG5256 TEF1 Translation elong 100.0 3.7E-37 7.9E-42 323.5 27.2 279 70-459 5-320 (428)
31 PRK12736 elongation factor Tu; 100.0 1.1E-36 2.4E-41 337.1 29.9 273 68-455 8-297 (394)
32 CHL00071 tufA elongation facto 100.0 1.6E-36 3.4E-41 337.5 30.3 273 68-455 8-307 (409)
33 PTZ00141 elongation factor 1- 100.0 2E-36 4.4E-41 338.2 27.2 273 70-455 5-318 (446)
34 PLN00043 elongation factor 1-a 100.0 2E-36 4.4E-41 337.9 25.6 273 70-455 5-318 (447)
35 PRK05306 infB translation init 100.0 1.1E-35 2.4E-40 347.2 31.7 310 70-520 288-629 (787)
36 PLN03126 Elongation factor Tu; 100.0 1E-35 2.2E-40 333.3 29.3 272 69-455 78-376 (478)
37 TIGR00485 EF-Tu translation el 100.0 1.3E-35 2.8E-40 329.1 27.9 272 69-455 9-297 (394)
38 PRK12735 elongation factor Tu; 100.0 4.9E-35 1.1E-39 324.2 29.0 273 68-455 8-299 (396)
39 PRK12317 elongation factor 1-a 100.0 3.8E-35 8.2E-40 329.2 27.6 274 70-456 4-311 (425)
40 PRK00049 elongation factor Tu; 100.0 7.9E-35 1.7E-39 322.2 29.4 273 68-455 8-299 (396)
41 TIGR02034 CysN sulfate adenyly 100.0 1.1E-34 2.4E-39 322.1 26.3 271 74-456 2-301 (406)
42 PLN03127 Elongation factor Tu; 100.0 4.1E-34 8.8E-39 319.1 29.6 273 68-455 57-350 (447)
43 PRK05124 cysN sulfate adenylyl 100.0 4.3E-34 9.4E-39 321.9 28.2 276 70-456 25-329 (474)
44 TIGR00483 EF-1_alpha translati 100.0 4.2E-34 9.1E-39 320.6 27.8 278 69-456 4-313 (426)
45 TIGR00487 IF-2 translation ini 100.0 2.4E-33 5.1E-38 321.2 32.6 308 70-520 85-427 (587)
46 PTZ00327 eukaryotic translatio 100.0 2.7E-32 5.9E-37 303.5 25.8 256 69-456 31-352 (460)
47 CHL00189 infB translation init 100.0 6.6E-32 1.4E-36 312.7 27.0 254 69-454 241-501 (742)
48 KOG0460 Mitochondrial translat 100.0 1.8E-32 3.8E-37 278.1 15.9 269 69-456 51-342 (449)
49 COG0050 TufB GTPases - transla 100.0 1E-31 2.3E-36 267.7 21.0 273 68-455 8-297 (394)
50 PRK05506 bifunctional sulfate 100.0 1.9E-31 4.2E-36 312.4 26.4 274 71-456 23-325 (632)
51 PRK10512 selenocysteinyl-tRNA- 100.0 4E-31 8.6E-36 305.3 26.5 249 74-455 2-260 (614)
52 PRK04000 translation initiatio 100.0 1.3E-30 2.8E-35 289.5 27.9 256 70-457 7-320 (411)
53 PF00009 GTP_EFTU: Elongation 100.0 7.8E-32 1.7E-36 269.1 15.1 144 70-216 1-146 (188)
54 TIGR03680 eif2g_arch translati 100.0 5E-30 1.1E-34 285.2 28.3 254 71-456 3-314 (406)
55 KOG0458 Elongation factor 1 al 100.0 6.3E-30 1.4E-34 277.7 25.3 278 67-453 172-488 (603)
56 TIGR00475 selB selenocysteine- 100.0 7.8E-30 1.7E-34 293.9 26.6 250 74-453 2-259 (581)
57 cd01885 EF2 EF2 (for archaea a 100.0 5.9E-29 1.3E-33 252.7 20.1 128 73-205 1-138 (222)
58 COG3276 SelB Selenocysteine-sp 100.0 2.6E-28 5.5E-33 258.9 22.0 248 74-455 2-256 (447)
59 COG2895 CysN GTPases - Sulfate 100.0 1.5E-28 3.3E-33 251.5 17.4 306 70-488 4-338 (431)
60 KOG0459 Polypeptide release fa 100.0 3E-29 6.4E-34 260.1 12.0 319 69-485 76-431 (501)
61 cd01884 EF_Tu EF-Tu subfamily. 100.0 3.6E-27 7.7E-32 235.8 19.1 127 73-205 3-131 (195)
62 COG0532 InfB Translation initi 99.9 1.4E-26 3.1E-31 252.1 22.4 252 71-454 4-261 (509)
63 COG5257 GCD11 Translation init 99.9 2.9E-26 6.3E-31 231.7 22.7 306 70-517 8-362 (415)
64 COG5258 GTPBP1 GTPase [General 99.9 2.6E-26 5.5E-31 236.6 22.1 285 69-454 114-436 (527)
65 KOG1145 Mitochondrial translat 99.9 1.6E-26 3.5E-31 247.8 20.9 251 70-452 151-405 (683)
66 PRK04004 translation initiatio 99.9 6.7E-26 1.5E-30 260.6 27.2 302 71-451 5-325 (586)
67 TIGR00491 aIF-2 translation in 99.9 1.5E-24 3.2E-29 248.3 29.8 255 72-422 4-283 (590)
68 cd01890 LepA LepA subfamily. 99.9 7.9E-25 1.7E-29 216.4 21.0 129 73-207 1-134 (179)
69 cd01883 EF1_alpha Eukaryotic e 99.9 7.2E-26 1.6E-30 231.5 13.8 133 74-206 1-151 (219)
70 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.6E-25 5.5E-30 225.6 15.9 133 74-206 1-144 (208)
71 COG1160 Predicted GTPases [Gen 99.9 1.8E-25 4E-30 239.7 14.1 199 34-342 136-349 (444)
72 cd01891 TypA_BipA TypA (tyrosi 99.9 2.2E-24 4.7E-29 216.5 20.2 144 71-219 1-144 (194)
73 cd04167 Snu114p Snu114p subfam 99.9 6.2E-24 1.4E-28 216.4 19.5 131 73-205 1-136 (213)
74 PF03764 EFG_IV: Elongation fa 99.9 2.1E-24 4.5E-29 199.1 13.6 119 540-662 1-120 (120)
75 KOG0461 Selenocysteine-specifi 99.9 7.9E-24 1.7E-28 215.2 18.9 246 73-441 8-268 (522)
76 cd01888 eIF2_gamma eIF2-gamma 99.9 9.9E-24 2.1E-28 213.2 15.3 116 73-206 1-151 (203)
77 cd01889 SelB_euk SelB subfamil 99.9 3.7E-23 8.1E-28 207.2 16.9 119 74-206 2-134 (192)
78 cd01684 Tet_like_IV EF-G_domai 99.9 4E-23 8.7E-28 188.1 14.1 115 542-662 1-115 (115)
79 cd04165 GTPBP1_like GTPBP1-lik 99.9 6E-22 1.3E-26 202.4 16.8 140 74-221 1-168 (224)
80 PRK14845 translation initiatio 99.9 5.4E-21 1.2E-25 228.4 27.4 272 85-452 474-781 (1049)
81 cd01683 EF2_IV_snRNP EF-2_doma 99.9 3.6E-22 7.9E-27 195.1 12.8 129 539-672 1-178 (178)
82 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 4.9E-22 1.1E-26 181.9 12.7 116 544-662 1-116 (116)
83 cd00881 GTP_translation_factor 99.9 4.4E-21 9.6E-26 190.7 20.1 142 74-220 1-143 (189)
84 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 2.5E-22 5.5E-27 170.4 8.5 78 667-744 1-80 (80)
85 cd01680 EFG_like_IV Elongation 99.9 1.4E-21 3E-26 179.2 13.3 116 544-662 1-116 (116)
86 PF00679 EFG_C: Elongation fac 99.9 1.8E-21 3.9E-26 169.1 10.7 88 664-751 1-89 (89)
87 cd01693 mtEFG2_like_IV mtEF-G2 99.9 3.5E-21 7.5E-26 177.4 12.1 118 542-662 1-120 (120)
88 smart00838 EFG_C Elongation fa 99.9 1.3E-21 2.8E-26 168.7 8.1 83 665-747 1-83 (85)
89 cd04171 SelB SelB subfamily. 99.8 4.5E-20 9.8E-25 179.1 17.0 115 74-206 2-118 (164)
90 TIGR03594 GTPase_EngA ribosome 99.8 1.7E-20 3.8E-25 211.6 15.7 150 36-205 133-296 (429)
91 PRK00093 GTP-binding protein D 99.8 3.6E-20 7.9E-25 209.3 17.3 150 36-205 135-297 (435)
92 PRK03003 GTP-binding protein D 99.8 4E-20 8.6E-25 210.0 17.0 151 36-206 172-336 (472)
93 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 1.3E-20 2.9E-25 159.5 8.9 78 667-744 1-78 (78)
94 cd01681 aeEF2_snRNP_like_IV Th 99.8 2.7E-20 5.8E-25 183.3 12.4 128 539-671 1-177 (177)
95 PF14492 EFG_II: Elongation Fa 99.8 1.5E-20 3.3E-25 157.0 8.0 75 465-539 1-75 (75)
96 COG1160 Predicted GTPases [Gen 99.8 1E-19 2.2E-24 195.8 16.1 113 73-205 4-125 (444)
97 cd03711 Tet_C Tet_C: C-terminu 99.8 2.5E-20 5.4E-25 157.8 8.8 78 667-744 1-78 (78)
98 PRK09518 bifunctional cytidyla 99.8 1.1E-19 2.3E-24 215.9 15.8 151 36-206 409-575 (712)
99 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 3.8E-20 8.3E-25 156.8 8.4 78 667-744 1-78 (78)
100 COG1159 Era GTPase [General fu 99.8 3.4E-19 7.3E-24 182.0 15.9 115 72-206 6-128 (298)
101 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1E-18 2.2E-23 170.5 17.5 114 73-207 1-117 (168)
102 cd04096 eEF2_snRNP_like_C eEF2 99.8 7.8E-20 1.7E-24 155.7 8.1 78 667-744 1-80 (80)
103 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.7E-19 3.6E-24 153.0 9.4 77 667-743 1-78 (79)
104 PRK09554 feoB ferrous iron tra 99.8 6.6E-19 1.4E-23 208.0 17.7 239 73-343 4-263 (772)
105 KOG0463 GTP-binding protein GP 99.8 4E-19 8.6E-24 182.7 13.2 284 73-457 134-458 (641)
106 cd01514 Elongation_Factor_C El 99.8 2.5E-19 5.5E-24 152.2 8.4 78 667-744 1-79 (79)
107 TIGR00436 era GTP-binding prot 99.8 3.6E-18 7.8E-23 180.3 18.3 111 74-205 2-120 (270)
108 PF02421 FeoB_N: Ferrous iron 99.8 1.1E-18 2.4E-23 166.2 12.6 108 74-204 2-117 (156)
109 cd03709 lepA_C lepA_C: This fa 99.8 6E-19 1.3E-23 149.8 8.7 77 667-743 1-79 (80)
110 PRK15494 era GTPase Era; Provi 99.8 6.5E-18 1.4E-22 183.4 18.2 116 70-205 50-173 (339)
111 KOG1143 Predicted translation 99.8 8E-18 1.7E-22 173.2 17.0 271 73-440 168-471 (591)
112 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.9E-18 1.5E-22 164.6 15.4 117 74-207 1-122 (167)
113 KOG1144 Translation initiation 99.8 5.7E-18 1.2E-22 186.9 15.7 244 73-410 476-738 (1064)
114 cd01894 EngA1 EngA1 subfamily. 99.8 1E-17 2.2E-22 161.1 15.8 111 76-206 1-119 (157)
115 cd01895 EngA2 EngA2 subfamily. 99.7 3.7E-17 8.1E-22 159.6 17.5 116 72-207 2-128 (174)
116 cd01864 Rab19 Rab19 subfamily. 99.7 4.5E-17 9.7E-22 158.8 16.1 114 71-205 2-121 (165)
117 cd01898 Obg Obg subfamily. Th 99.7 6.4E-17 1.4E-21 158.2 16.7 112 74-206 2-128 (170)
118 cd03690 Tet_II Tet_II: This su 99.7 1.1E-17 2.5E-22 143.8 10.0 83 370-453 1-85 (85)
119 TIGR03594 GTPase_EngA ribosome 99.7 3.3E-17 7.2E-22 184.9 16.7 113 74-206 1-121 (429)
120 cd04157 Arl6 Arl6 subfamily. 99.7 5.6E-17 1.2E-21 157.1 15.7 112 74-207 1-119 (162)
121 PRK03003 GTP-binding protein D 99.7 6.5E-17 1.4E-21 183.8 17.7 116 70-205 36-159 (472)
122 cd04151 Arl1 Arl1 subfamily. 99.7 6.1E-17 1.3E-21 156.7 14.8 110 74-207 1-115 (158)
123 cd04154 Arl2 Arl2 subfamily. 99.7 8.3E-17 1.8E-21 158.3 15.5 112 71-206 13-129 (173)
124 PRK00089 era GTPase Era; Revie 99.7 1.6E-16 3.5E-21 169.9 18.7 114 72-205 5-126 (292)
125 cd01897 NOG NOG1 is a nucleola 99.7 1.2E-16 2.6E-21 156.0 16.1 113 73-206 1-127 (168)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.5E-16 3.3E-21 153.7 15.3 109 74-206 1-114 (158)
127 cd01879 FeoB Ferrous iron tran 99.7 1.1E-16 2.3E-21 154.4 13.5 107 77-206 1-115 (158)
128 cd04124 RabL2 RabL2 subfamily. 99.7 1.6E-16 3.5E-21 154.4 14.4 113 74-205 2-117 (161)
129 cd04145 M_R_Ras_like M-Ras/R-R 99.7 5E-16 1.1E-20 150.8 17.8 111 73-205 3-120 (164)
130 cd04092 mtEFG2_II_like mtEFG2_ 99.7 6.3E-17 1.4E-21 138.9 10.0 81 373-453 1-83 (83)
131 PRK09518 bifunctional cytidyla 99.7 2.5E-16 5.4E-21 187.3 18.3 117 69-205 272-396 (712)
132 PRK15467 ethanolamine utilizat 99.7 2.1E-16 4.5E-21 153.1 13.9 100 73-206 2-105 (158)
133 cd04149 Arf6 Arf6 subfamily. 99.7 3.3E-16 7.1E-21 153.4 15.1 110 73-206 10-124 (168)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4.6E-16 9.9E-21 153.3 16.2 111 72-206 15-130 (174)
135 PRK04213 GTP-binding protein; 99.7 4.2E-16 9.2E-21 157.2 16.0 112 71-207 8-145 (201)
136 cd04113 Rab4 Rab4 subfamily. 99.7 2.9E-16 6.3E-21 152.2 14.2 113 74-205 2-118 (161)
137 cd00879 Sar1 Sar1 subfamily. 99.7 3.1E-16 6.8E-21 156.6 14.7 112 71-206 18-134 (190)
138 cd04106 Rab23_lke Rab23-like s 99.7 6E-16 1.3E-20 150.0 16.1 111 74-205 2-119 (162)
139 cd04114 Rab30 Rab30 subfamily. 99.7 3.4E-16 7.5E-21 152.9 14.4 115 70-205 5-125 (169)
140 cd04091 mtEFG1_II_like mtEFG1_ 99.7 1.5E-16 3.3E-21 135.7 10.2 81 373-453 1-81 (81)
141 COG0486 ThdF Predicted GTPase 99.7 2.2E-16 4.8E-21 170.5 13.5 114 73-207 218-339 (454)
142 smart00178 SAR Sar1p-like memb 99.7 5E-16 1.1E-20 154.5 14.8 113 70-206 15-132 (184)
143 PRK00093 GTP-binding protein D 99.7 6.8E-16 1.5E-20 174.5 17.7 113 73-205 2-122 (435)
144 cd04158 ARD1 ARD1 subfamily. 99.7 9.3E-16 2E-20 150.3 16.3 109 74-206 1-114 (169)
145 smart00175 RAB Rab subfamily o 99.7 8.3E-16 1.8E-20 149.1 15.8 111 74-205 2-118 (164)
146 smart00177 ARF ARF-like small 99.7 1.1E-15 2.4E-20 150.7 16.4 112 72-207 13-129 (175)
147 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.1E-15 2.4E-20 148.3 16.1 109 74-206 2-115 (159)
148 cd01865 Rab3 Rab3 subfamily. 99.7 6.9E-16 1.5E-20 150.5 14.8 114 73-205 2-119 (165)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.2E-16 1.8E-20 147.7 14.7 111 74-206 3-121 (157)
150 PLN00223 ADP-ribosylation fact 99.7 1.2E-15 2.6E-20 151.3 16.3 112 72-207 17-133 (181)
151 cd03689 RF3_II RF3_II: this su 99.7 2.3E-16 5.1E-21 135.4 9.5 79 375-453 1-84 (85)
152 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 9.2E-16 2E-20 152.5 15.3 113 74-206 5-123 (183)
153 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 2.7E-16 5.8E-21 135.0 9.7 81 373-453 1-83 (83)
154 cd01861 Rab6 Rab6 subfamily. 99.7 8.6E-16 1.9E-20 148.8 14.5 111 74-205 2-118 (161)
155 cd01860 Rab5_related Rab5-rela 99.7 1.1E-15 2.5E-20 148.2 15.3 113 74-205 3-119 (163)
156 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.4E-15 3.1E-20 153.5 16.5 111 74-205 2-123 (201)
157 cd01863 Rab18 Rab18 subfamily. 99.7 9.3E-16 2E-20 148.6 14.6 113 74-205 2-119 (161)
158 smart00173 RAS Ras subfamily o 99.7 2.5E-15 5.3E-20 146.1 17.6 112 74-205 2-118 (164)
159 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.9E-15 6.2E-20 144.8 18.0 110 74-205 3-119 (162)
160 cd04163 Era Era subfamily. Er 99.7 3E-15 6.6E-20 144.7 18.2 113 73-205 4-124 (168)
161 cd01867 Rab8_Rab10_Rab13_like 99.7 1.4E-15 3E-20 148.7 15.8 113 72-205 3-121 (167)
162 cd01866 Rab2 Rab2 subfamily. 99.7 1.4E-15 3E-20 148.8 15.6 115 72-205 4-122 (168)
163 PRK12299 obgE GTPase CgtA; Rev 99.7 1.6E-15 3.5E-20 163.6 16.9 116 70-206 156-285 (335)
164 cd04120 Rab12 Rab12 subfamily. 99.7 1.4E-15 3E-20 153.2 15.2 111 74-205 2-118 (202)
165 cd01862 Rab7 Rab7 subfamily. 99.7 1.5E-15 3.3E-20 148.6 15.2 111 74-205 2-122 (172)
166 cd04147 Ras_dva Ras-dva subfam 99.7 1.5E-15 3.3E-20 152.8 15.6 110 74-205 1-117 (198)
167 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.1E-15 4.6E-20 147.0 16.1 113 72-205 2-120 (166)
168 cd04175 Rap1 Rap1 subgroup. T 99.7 3.3E-15 7.2E-20 145.3 17.3 110 74-205 3-119 (164)
169 KOG0466 Translation initiation 99.7 1.9E-16 4.1E-21 159.3 8.7 244 68-440 34-336 (466)
170 COG2229 Predicted GTPase [Gene 99.7 2.7E-15 5.8E-20 142.4 15.9 132 72-214 10-143 (187)
171 cd04119 RJL RJL (RabJ-Like) su 99.7 1.9E-15 4.2E-20 147.0 15.2 113 74-205 2-123 (168)
172 PRK12298 obgE GTPase CgtA; Rev 99.7 2E-15 4.3E-20 166.1 17.0 115 70-205 157-288 (390)
173 cd04136 Rap_like Rap-like subf 99.7 3.8E-15 8.2E-20 144.4 17.0 111 73-205 2-119 (163)
174 cd04159 Arl10_like Arl10-like 99.6 3E-15 6.4E-20 143.7 15.9 109 75-206 2-115 (159)
175 PTZ00369 Ras-like protein; Pro 99.6 2.5E-15 5.5E-20 150.1 15.9 113 73-205 6-123 (189)
176 cd00877 Ran Ran (Ras-related n 99.6 1.5E-15 3.3E-20 148.4 14.0 113 74-205 2-117 (166)
177 TIGR03598 GTPase_YsxC ribosome 99.6 1.2E-15 2.6E-20 151.1 13.2 116 69-206 15-143 (179)
178 cd04127 Rab27A Rab27a subfamil 99.6 2.8E-15 6E-20 148.2 15.8 114 71-205 3-133 (180)
179 cd01878 HflX HflX subfamily. 99.6 4.2E-15 9.1E-20 150.3 17.3 116 70-206 39-167 (204)
180 cd01868 Rab11_like Rab11-like. 99.6 3E-15 6.6E-20 145.7 15.7 113 72-205 3-121 (165)
181 cd04122 Rab14 Rab14 subfamily. 99.6 2.9E-15 6.3E-20 146.2 15.3 114 73-205 3-120 (166)
182 PRK05291 trmE tRNA modificatio 99.6 1.4E-15 3.1E-20 171.1 14.6 111 73-205 216-334 (449)
183 cd04139 RalA_RalB RalA/RalB su 99.6 2.7E-15 5.9E-20 145.4 14.6 112 74-205 2-118 (164)
184 cd04115 Rab33B_Rab33A Rab33B/R 99.6 2.6E-15 5.6E-20 147.2 14.5 113 72-205 2-122 (170)
185 cd04155 Arl3 Arl3 subfamily. 99.6 2.7E-15 5.8E-20 147.3 14.6 112 71-206 13-129 (173)
186 PTZ00133 ADP-ribosylation fact 99.6 3.8E-15 8.3E-20 147.9 15.8 111 73-207 18-133 (182)
187 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.7E-15 8.1E-20 145.8 15.5 111 74-208 1-116 (167)
188 TIGR02729 Obg_CgtA Obg family 99.6 3.7E-15 8E-20 160.7 16.9 116 70-206 155-287 (329)
189 cd00154 Rab Rab family. Rab G 99.6 3.8E-15 8.1E-20 142.9 14.8 113 74-205 2-118 (159)
190 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 5.8E-15 1.3E-19 144.0 16.1 110 75-207 2-114 (164)
191 cd04156 ARLTS1 ARLTS1 subfamil 99.6 4.6E-15 1E-19 143.5 15.3 109 74-206 1-115 (160)
192 cd01893 Miro1 Miro1 subfamily. 99.6 5E-15 1.1E-19 144.6 15.7 112 74-206 2-117 (166)
193 cd04123 Rab21 Rab21 subfamily. 99.6 7.1E-15 1.5E-19 142.1 16.5 111 74-205 2-118 (162)
194 TIGR00231 small_GTP small GTP- 99.6 1.4E-15 3E-20 145.3 11.5 112 73-206 2-122 (161)
195 cd04142 RRP22 RRP22 subfamily. 99.6 4.8E-15 1E-19 149.1 15.6 111 74-205 2-129 (198)
196 cd04112 Rab26 Rab26 subfamily. 99.6 4.3E-15 9.2E-20 148.7 14.9 114 74-205 2-119 (191)
197 cd04121 Rab40 Rab40 subfamily. 99.6 8.6E-15 1.9E-19 146.0 16.9 115 70-205 4-123 (189)
198 PRK00454 engB GTP-binding prot 99.6 6.4E-15 1.4E-19 147.8 16.0 116 68-205 20-148 (196)
199 TIGR03156 GTP_HflX GTP-binding 99.6 3.6E-15 7.7E-20 162.3 15.1 114 71-205 188-314 (351)
200 cd04116 Rab9 Rab9 subfamily. 99.6 5.2E-15 1.1E-19 144.9 14.8 114 71-205 4-127 (170)
201 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4.7E-15 1E-19 165.9 16.4 115 71-206 202-324 (442)
202 TIGR02528 EutP ethanolamine ut 99.6 2.1E-15 4.7E-20 143.0 11.7 96 74-205 2-101 (142)
203 cd04137 RheB Rheb (Ras Homolog 99.6 8.9E-15 1.9E-19 144.7 16.5 111 73-205 2-119 (180)
204 cd01881 Obg_like The Obg-like 99.6 5.4E-15 1.2E-19 145.2 14.8 109 77-206 1-134 (176)
205 cd04140 ARHI_like ARHI subfami 99.6 6E-15 1.3E-19 143.8 14.8 112 74-205 3-121 (165)
206 KOG1423 Ras-like GTPase ERA [C 99.6 5.3E-15 1.1E-19 149.9 14.6 118 68-205 68-198 (379)
207 cd04110 Rab35 Rab35 subfamily. 99.6 7.5E-15 1.6E-19 148.0 15.7 114 71-205 5-123 (199)
208 cd04176 Rap2 Rap2 subgroup. T 99.6 5.5E-15 1.2E-19 143.6 14.0 112 74-205 3-119 (163)
209 cd04144 Ras2 Ras2 subfamily. 99.6 1.1E-14 2.5E-19 145.5 16.7 110 74-205 1-119 (190)
210 cd04177 RSR1 RSR1 subgroup. R 99.6 1.6E-14 3.4E-19 141.4 17.3 110 74-205 3-119 (168)
211 PRK12296 obgE GTPase CgtA; Rev 99.6 9.1E-15 2E-19 163.4 17.5 116 69-205 156-297 (500)
212 PLN03118 Rab family protein; P 99.6 7.1E-15 1.5E-19 149.6 15.1 111 73-205 15-133 (211)
213 cd00880 Era_like Era (E. coli 99.6 1.3E-14 2.7E-19 138.8 15.9 110 77-206 1-118 (163)
214 cd04146 RERG_RasL11_like RERG/ 99.6 6.5E-15 1.4E-19 143.5 13.9 112 74-205 1-119 (165)
215 PLN03071 GTP-binding nuclear p 99.6 7.8E-15 1.7E-19 150.0 14.8 116 71-205 12-130 (219)
216 COG0218 Predicted GTPase [Gene 99.6 1.6E-14 3.4E-19 140.5 15.9 133 67-221 19-165 (200)
217 cd04109 Rab28 Rab28 subfamily. 99.6 1.3E-14 2.7E-19 148.2 16.2 111 74-205 2-122 (215)
218 cd00876 Ras Ras family. The R 99.6 1.5E-14 3.2E-19 139.5 15.8 110 74-205 1-117 (160)
219 PRK12297 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.9E-19 160.3 17.4 115 70-205 156-287 (424)
220 PLN03110 Rab GTPase; Provision 99.6 6.7E-15 1.5E-19 150.2 14.0 115 70-205 10-130 (216)
221 cd04126 Rab20 Rab20 subfamily. 99.6 1.6E-14 3.6E-19 147.1 16.5 109 74-206 2-114 (220)
222 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.2E-14 2.6E-19 141.3 14.6 115 74-205 2-120 (164)
223 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 5.7E-15 1.2E-19 145.3 12.3 109 74-205 4-120 (172)
224 cd04125 RabA_like RabA-like su 99.6 1.4E-14 3E-19 144.5 15.1 113 74-205 2-118 (188)
225 cd03691 BipA_TypA_II BipA_TypA 99.6 5.1E-15 1.1E-19 128.0 10.0 81 373-453 1-86 (86)
226 PF00025 Arf: ADP-ribosylation 99.6 1E-14 2.3E-19 143.8 13.3 115 70-208 12-131 (175)
227 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.5E-14 5.4E-19 140.4 15.9 111 74-205 2-119 (170)
228 cd04143 Rhes_like Rhes_like su 99.6 3.1E-14 6.7E-19 147.9 16.7 109 74-205 2-126 (247)
229 PRK11058 GTPase HflX; Provisio 99.6 1.7E-14 3.8E-19 160.4 15.8 113 72-205 197-322 (426)
230 cd03699 lepA_II lepA_II: This 99.6 6.8E-15 1.5E-19 127.0 9.6 80 373-453 1-86 (86)
231 cd04118 Rab24 Rab24 subfamily. 99.6 2.7E-14 5.8E-19 143.0 15.3 112 74-205 2-118 (193)
232 smart00176 RAN Ran (Ras-relate 99.6 1.7E-14 3.8E-19 145.0 13.8 109 78-205 1-112 (200)
233 cd01882 BMS1 Bms1. Bms1 is an 99.6 7.6E-15 1.6E-19 150.5 11.0 160 70-256 37-211 (225)
234 cd01874 Cdc42 Cdc42 subfamily. 99.6 5.5E-14 1.2E-18 138.6 16.2 111 73-206 2-119 (175)
235 PLN03108 Rab family protein; P 99.6 4.8E-14 1E-18 143.3 15.9 116 71-205 5-124 (210)
236 cd04132 Rho4_like Rho4-like su 99.6 3.7E-14 8E-19 141.2 14.7 109 74-205 2-118 (187)
237 cd04117 Rab15 Rab15 subfamily. 99.6 8.8E-14 1.9E-18 135.2 16.7 111 74-205 2-118 (161)
238 cd01892 Miro2 Miro2 subfamily. 99.6 5.2E-14 1.1E-18 138.0 14.7 116 70-205 2-121 (169)
239 cd04134 Rho3 Rho3 subfamily. 99.6 4.4E-14 9.4E-19 141.2 14.4 114 73-206 1-118 (189)
240 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.5E-14 1.2E-18 139.5 14.9 110 74-205 2-117 (182)
241 cd04135 Tc10 TC10 subfamily. 99.6 6E-14 1.3E-18 137.8 14.6 113 74-206 2-118 (174)
242 cd01875 RhoG RhoG subfamily. 99.5 6.7E-14 1.5E-18 140.1 15.0 114 73-206 4-121 (191)
243 cd00157 Rho Rho (Ras homology) 99.5 5.1E-14 1.1E-18 137.6 13.8 114 74-207 2-119 (171)
244 KOG0092 GTPase Rab5/YPT51 and 99.5 3.2E-14 6.9E-19 135.7 11.7 115 73-206 6-124 (200)
245 cd01871 Rac1_like Rac1-like su 99.5 9.2E-14 2E-18 136.9 14.9 113 74-206 3-119 (174)
246 TIGR00437 feoB ferrous iron tr 99.5 3.6E-14 7.9E-19 164.4 14.0 104 79-205 1-112 (591)
247 cd04133 Rop_like Rop subfamily 99.5 9.6E-14 2.1E-18 136.9 14.5 113 73-205 2-118 (176)
248 cd01870 RhoA_like RhoA-like su 99.5 7.9E-14 1.7E-18 137.1 13.6 114 73-206 2-119 (175)
249 cd04111 Rab39 Rab39 subfamily. 99.5 1.4E-13 3E-18 140.0 15.7 112 73-205 3-122 (211)
250 COG0370 FeoB Fe2+ transport sy 99.5 9.5E-14 2.1E-18 156.4 15.3 109 73-204 4-120 (653)
251 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.5E-13 3.3E-18 131.6 14.2 116 70-206 7-128 (205)
252 cd03700 eEF2_snRNP_like_II EF2 99.5 3.3E-14 7.2E-19 124.6 8.9 80 373-452 1-92 (93)
253 KOG0073 GTP-binding ADP-ribosy 99.5 2.9E-13 6.3E-18 125.3 14.8 111 73-207 17-132 (185)
254 smart00174 RHO Rho (Ras homolo 99.5 2.7E-13 6E-18 133.1 15.3 109 75-205 1-115 (174)
255 cd04130 Wrch_1 Wrch-1 subfamil 99.5 4.3E-13 9.3E-18 131.9 15.9 112 74-205 2-117 (173)
256 cd04148 RGK RGK subfamily. Th 99.5 1.9E-13 4.2E-18 139.9 13.7 112 74-205 2-119 (221)
257 cd00882 Ras_like_GTPase Ras-li 99.5 1.8E-13 4E-18 129.1 12.4 108 77-206 1-116 (157)
258 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 4.5E-13 9.7E-18 132.9 15.5 114 72-205 5-122 (182)
259 cd01876 YihA_EngB The YihA (En 99.5 7.1E-13 1.5E-17 128.5 16.3 109 75-205 2-123 (170)
260 PF01926 MMR_HSR1: 50S ribosom 99.5 3.9E-13 8.4E-18 123.1 13.3 107 74-201 1-116 (116)
261 cd04131 Rnd Rnd subfamily. Th 99.5 4.5E-13 9.8E-18 132.4 14.4 112 74-205 3-118 (178)
262 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 1.6E-13 3.4E-18 120.5 9.8 78 373-450 1-90 (94)
263 KOG0078 GTP-binding protein SE 99.5 9.8E-13 2.1E-17 128.0 15.8 120 68-206 8-131 (207)
264 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 1.1E-12 2.3E-17 134.6 16.9 113 73-205 14-130 (232)
265 cd01896 DRG The developmentall 99.5 8.4E-13 1.8E-17 136.1 16.0 131 74-227 2-155 (233)
266 PF10662 PduV-EutP: Ethanolami 99.5 2.7E-13 5.9E-18 126.3 11.1 97 73-205 2-102 (143)
267 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.1E-12 2.5E-17 125.0 14.1 116 72-206 22-142 (221)
268 cd04105 SR_beta Signal recogni 99.4 7.2E-13 1.6E-17 133.8 13.5 116 73-210 1-127 (203)
269 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 1.5E-12 3.3E-17 132.8 15.7 110 73-205 2-118 (222)
270 PTZ00132 GTP-binding nuclear p 99.4 2.4E-12 5.2E-17 131.3 16.1 115 72-205 9-126 (215)
271 cd04103 Centaurin_gamma Centau 99.4 1.3E-12 2.7E-17 126.7 12.7 103 74-204 2-111 (158)
272 cd01873 RhoBTB RhoBTB subfamil 99.4 3.1E-12 6.7E-17 128.3 14.6 66 139-206 65-134 (195)
273 KOG0070 GTP-binding ADP-ribosy 99.4 8.9E-13 1.9E-17 125.7 9.8 113 72-208 17-134 (181)
274 KOG1489 Predicted GTP-binding 99.4 2.6E-12 5.7E-17 131.4 13.6 116 69-205 193-325 (366)
275 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 5.4E-12 1.2E-16 126.8 15.5 114 73-206 1-130 (196)
276 cd04129 Rho2 Rho2 subfamily. 99.4 4.5E-12 9.7E-17 126.4 14.5 110 73-205 2-118 (187)
277 PF00071 Ras: Ras family; Int 99.4 5.7E-12 1.2E-16 122.1 14.1 113 74-205 1-117 (162)
278 KOG1191 Mitochondrial GTPase [ 99.4 3.8E-12 8.2E-17 137.3 13.9 114 69-202 265-387 (531)
279 KOG0075 GTP-binding ADP-ribosy 99.4 3.4E-12 7.3E-17 115.8 9.8 111 74-207 22-137 (186)
280 KOG0080 GTPase Rab18, small G 99.4 3E-12 6.4E-17 117.8 9.6 113 72-205 11-130 (209)
281 PRK09866 hypothetical protein; 99.4 1.7E-11 3.6E-16 137.6 17.3 66 140-205 230-302 (741)
282 KOG0394 Ras-related GTPase [Ge 99.3 4.7E-12 1E-16 119.6 10.7 118 70-206 7-132 (210)
283 COG2262 HflX GTPases [General 99.3 8.2E-12 1.8E-16 133.0 12.6 115 70-205 190-317 (411)
284 COG3596 Predicted GTPase [Gene 99.3 2.6E-11 5.6E-16 122.7 15.4 116 70-205 37-161 (296)
285 COG1163 DRG Predicted GTPase [ 99.3 1.5E-11 3.3E-16 126.5 12.5 135 73-229 64-220 (365)
286 KOG0098 GTPase Rab2, small G p 99.3 1.1E-11 2.3E-16 117.4 10.5 115 72-205 6-124 (216)
287 PF09439 SRPRB: Signal recogni 99.3 1.2E-11 2.5E-16 120.7 11.1 115 72-212 3-132 (181)
288 KOG0093 GTPase Rab3, small G p 99.3 3.2E-11 6.9E-16 109.5 12.6 116 72-206 21-140 (193)
289 cd04104 p47_IIGP_like p47 (47- 99.3 1.7E-11 3.6E-16 123.3 12.0 113 73-205 2-120 (197)
290 PRK13768 GTPase; Provisional 99.3 3.9E-11 8.5E-16 125.2 14.1 69 139-207 96-177 (253)
291 COG1084 Predicted GTPase [Gene 99.3 5.3E-11 1.2E-15 123.2 13.5 114 71-206 167-294 (346)
292 cd04102 RabL3 RabL3 (Rab-like3 99.3 7E-11 1.5E-15 118.9 13.7 114 74-206 2-143 (202)
293 PRK09435 membrane ATPase/prote 99.2 5.5E-11 1.2E-15 127.5 13.6 129 70-207 54-209 (332)
294 KOG0076 GTP-binding ADP-ribosy 99.2 1.9E-11 4.1E-16 114.5 8.6 120 72-207 17-141 (197)
295 PF08477 Miro: Miro-like prote 99.2 2.3E-11 5E-16 111.6 8.4 113 74-203 1-119 (119)
296 PLN00023 GTP-binding protein; 99.2 1.1E-10 2.3E-15 123.4 14.3 116 72-206 21-165 (334)
297 cd01899 Ygr210 Ygr210 subfamil 99.2 2.9E-10 6.4E-15 121.8 15.9 29 317-345 241-270 (318)
298 KOG0079 GTP-binding protein H- 99.2 8.2E-11 1.8E-15 106.9 9.7 116 72-206 8-126 (198)
299 KOG0086 GTPase Rab4, small G p 99.2 1.7E-10 3.6E-15 105.3 10.9 118 70-206 7-128 (214)
300 KOG0087 GTPase Rab11/YPT3, sma 99.2 9.9E-11 2.1E-15 113.6 10.0 118 69-205 11-132 (222)
301 COG0536 Obg Predicted GTPase [ 99.2 3.4E-10 7.4E-15 117.7 14.5 115 70-205 157-288 (369)
302 KOG0095 GTPase Rab30, small G 99.2 2.6E-10 5.6E-15 103.7 10.9 113 70-205 5-125 (213)
303 KOG0090 Signal recognition par 99.1 1.9E-10 4E-15 111.8 9.9 118 73-214 39-167 (238)
304 COG1100 GTPase SAR1 and relate 99.1 7.5E-10 1.6E-14 113.0 15.1 114 73-207 6-126 (219)
305 cd01850 CDC_Septin CDC/Septin. 99.1 4.2E-10 9.2E-15 118.8 13.4 137 73-221 5-173 (276)
306 KOG0072 GTP-binding ADP-ribosy 99.1 9.4E-11 2E-15 106.2 6.7 111 73-207 19-134 (182)
307 PTZ00099 rab6; Provisional 99.1 3.7E-10 8.1E-15 111.3 11.4 68 138-205 27-98 (176)
308 KOG0071 GTP-binding ADP-ribosy 99.1 8.1E-10 1.8E-14 99.7 11.9 111 74-208 19-134 (180)
309 TIGR00073 hypB hydrogenase acc 99.0 2.6E-09 5.6E-14 108.3 14.2 128 69-206 19-162 (207)
310 KOG0088 GTPase Rab21, small G 99.0 3.7E-10 8.1E-15 103.7 7.0 114 73-205 14-131 (218)
311 PRK09602 translation-associate 99.0 3.2E-09 7E-14 117.3 15.6 81 74-175 3-114 (396)
312 KOG0074 GTP-binding ADP-ribosy 99.0 1.7E-09 3.7E-14 97.7 9.9 112 71-206 16-133 (185)
313 PF03029 ATP_bind_1: Conserved 99.0 7.2E-10 1.6E-14 114.3 8.3 66 141-206 92-170 (238)
314 KOG1532 GTPase XAB1, interacts 99.0 4.9E-10 1.1E-14 112.4 6.3 140 70-209 17-198 (366)
315 cd01853 Toc34_like Toc34-like 99.0 1.2E-08 2.6E-13 105.9 15.3 117 69-205 28-162 (249)
316 PF03144 GTP_EFTU_D2: Elongati 99.0 4.8E-10 1E-14 93.9 3.9 67 386-452 1-74 (74)
317 KOG0395 Ras-related GTPase [Ge 98.9 8.8E-09 1.9E-13 103.0 13.1 115 72-206 3-122 (196)
318 KOG0052 Translation elongation 98.9 2.9E-10 6.4E-15 120.6 1.2 133 71-206 6-156 (391)
319 PF03308 ArgK: ArgK protein; 98.9 3.7E-09 8.1E-14 107.3 9.0 128 71-207 28-182 (266)
320 smart00053 DYNc Dynamin, GTPas 98.9 2.5E-08 5.4E-13 102.5 14.8 137 71-207 25-207 (240)
321 TIGR00750 lao LAO/AO transport 98.9 4E-08 8.8E-13 105.3 17.0 131 70-207 32-187 (300)
322 TIGR02836 spore_IV_A stage IV 98.9 3E-08 6.4E-13 106.5 14.9 151 71-226 16-214 (492)
323 COG4917 EutP Ethanolamine util 98.8 6.9E-09 1.5E-13 92.3 7.4 98 73-205 2-103 (148)
324 COG1703 ArgK Putative periplas 98.8 1.3E-08 2.8E-13 104.5 10.3 129 72-207 51-204 (323)
325 KOG0083 GTPase Rab26/Rab37, sm 98.8 2E-09 4.3E-14 96.1 3.6 111 77-205 2-116 (192)
326 PTZ00258 GTP-binding protein; 98.8 1.7E-07 3.6E-12 102.7 18.7 83 71-174 20-126 (390)
327 PRK09601 GTP-binding protein Y 98.8 2.6E-07 5.7E-12 99.9 19.7 81 73-174 3-107 (364)
328 KOG4252 GTP-binding protein [S 98.8 4.2E-09 9.1E-14 98.9 4.8 119 68-205 16-137 (246)
329 KOG0091 GTPase Rab39, small G 98.8 4.2E-08 9.2E-13 91.0 10.7 113 74-205 10-129 (213)
330 TIGR00101 ureG urease accessor 98.8 1.2E-07 2.7E-12 95.2 14.3 56 139-205 91-150 (199)
331 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 8.1E-08 1.8E-12 98.1 13.0 127 74-220 1-140 (232)
332 KOG0097 GTPase Rab14, small G 98.7 7.1E-08 1.5E-12 87.0 10.6 118 69-205 8-129 (215)
333 cd03693 EF1_alpha_II EF1_alpha 98.7 5.3E-08 1.2E-12 84.9 9.7 82 370-455 2-89 (91)
334 KOG0081 GTPase Rab27, small G 98.7 2.4E-08 5.1E-13 92.1 7.2 67 140-206 67-138 (219)
335 PF00350 Dynamin_N: Dynamin fa 98.7 3.7E-08 8.1E-13 96.1 8.2 64 139-202 100-168 (168)
336 KOG0077 Vesicle coat complex C 98.7 7.3E-08 1.6E-12 90.0 9.4 116 71-210 19-139 (193)
337 TIGR00991 3a0901s02IAP34 GTP-b 98.7 3E-07 6.6E-12 96.9 15.2 115 71-205 37-166 (313)
338 cd01342 Translation_Factor_II_ 98.7 9.1E-08 2E-12 80.7 9.0 76 373-452 1-82 (83)
339 cd03698 eRF3_II_like eRF3_II_l 98.7 1.2E-07 2.6E-12 81.2 9.5 78 372-453 1-83 (83)
340 PF05049 IIGP: Interferon-indu 98.6 3.7E-07 8E-12 98.9 13.4 112 72-204 35-153 (376)
341 PRK10463 hydrogenase nickel in 98.6 4.5E-07 9.7E-12 95.0 13.4 27 69-95 101-127 (290)
342 cd01900 YchF YchF subfamily. 98.6 1.5E-07 3.3E-12 98.6 8.3 80 75-175 1-104 (274)
343 cd01859 MJ1464 MJ1464. This f 98.5 3.5E-07 7.6E-12 88.3 9.0 51 155-205 4-54 (156)
344 cd04089 eRF3_II eRF3_II: domai 98.5 6.3E-07 1.4E-11 76.5 9.2 77 372-453 1-82 (82)
345 COG0378 HypB Ni2+-binding GTPa 98.5 1.3E-06 2.8E-11 84.9 12.2 117 72-205 13-155 (202)
346 PF04548 AIG1: AIG1 family; I 98.5 2.1E-06 4.6E-11 87.3 14.5 115 73-207 1-131 (212)
347 KOG2486 Predicted GTPase [Gene 98.4 2.1E-06 4.5E-11 87.3 10.5 115 70-205 134-261 (320)
348 KOG0393 Ras-related small GTPa 98.4 8.1E-07 1.8E-11 87.4 7.4 112 73-205 5-122 (198)
349 KOG1490 GTP-binding protein CR 98.4 1E-06 2.2E-11 95.7 8.5 115 71-206 167-295 (620)
350 KOG0410 Predicted GTP binding 98.3 1.4E-06 3E-11 90.0 8.8 114 72-205 178-307 (410)
351 COG5192 BMS1 GTP-binding prote 98.3 3E-06 6.5E-11 92.6 11.6 121 73-222 70-191 (1077)
352 cd03696 selB_II selB_II: this 98.3 3.4E-06 7.4E-11 72.2 8.7 77 373-453 1-83 (83)
353 cd01858 NGP_1 NGP-1. Autoanti 98.3 3.7E-06 8.1E-11 81.2 9.4 49 157-205 2-52 (157)
354 cd03694 GTPBP_II Domain II of 98.3 5.1E-06 1.1E-10 71.7 9.0 76 374-453 2-87 (87)
355 TIGR00993 3a0901s04IAP86 chlor 98.3 1.3E-05 2.7E-10 91.4 14.5 116 71-206 117-250 (763)
356 TIGR01425 SRP54_euk signal rec 98.2 4.5E-05 9.7E-10 84.6 17.8 132 72-205 100-252 (429)
357 cd03697 EFTU_II EFTU_II: Elong 98.2 5.2E-06 1.1E-10 71.7 8.0 78 373-454 1-86 (87)
358 cd03695 CysN_NodQ_II CysN_NodQ 98.2 7.8E-06 1.7E-10 69.5 8.9 76 373-452 1-80 (81)
359 PRK14722 flhF flagellar biosyn 98.2 7.2E-06 1.6E-10 89.5 10.3 130 71-205 136-294 (374)
360 cd01855 YqeH YqeH. YqeH is an 98.2 9.8E-07 2.1E-11 88.1 3.4 89 40-150 102-190 (190)
361 KOG1486 GTP-binding protein DR 98.2 6.7E-06 1.5E-10 82.0 9.0 83 73-176 63-152 (364)
362 KOG1673 Ras GTPases [General f 98.2 9.3E-06 2E-10 75.1 9.2 113 73-204 21-136 (205)
363 COG0012 Predicted GTPase, prob 98.2 0.00011 2.3E-09 78.8 18.5 82 73-175 3-109 (372)
364 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.6E-06 3.4E-11 83.9 4.0 85 41-150 73-157 (157)
365 cd01856 YlqF YlqF. Proteins o 98.1 5.3E-06 1.1E-10 81.4 7.8 57 147-205 2-59 (171)
366 KOG3883 Ras family small GTPas 98.1 5.6E-05 1.2E-09 69.9 13.4 114 71-205 8-131 (198)
367 PF00735 Septin: Septin; Inte 98.1 2.2E-05 4.8E-10 83.1 12.5 137 73-221 5-172 (281)
368 cd01849 YlqF_related_GTPase Yl 98.1 2.8E-06 6.1E-11 81.9 4.8 88 40-150 62-155 (155)
369 cd01855 YqeH YqeH. YqeH is an 98.1 8.6E-06 1.9E-10 81.3 8.5 54 150-205 21-74 (190)
370 TIGR03596 GTPase_YlqF ribosome 98.1 7.1E-06 1.5E-10 87.0 8.2 56 148-205 5-61 (276)
371 cd03110 Fer4_NifH_child This p 98.1 6.7E-05 1.4E-09 74.1 14.4 81 138-221 91-171 (179)
372 TIGR03597 GTPase_YqeH ribosome 98.1 2.4E-06 5.2E-11 93.9 4.4 155 41-222 131-297 (360)
373 COG5019 CDC3 Septin family pro 98.1 5.8E-05 1.3E-09 80.2 14.4 148 73-232 24-203 (373)
374 KOG1954 Endocytosis/signaling 98.1 1.4E-05 3.1E-10 83.8 9.2 136 71-206 57-225 (532)
375 cd03115 SRP The signal recogni 98.0 2.7E-05 5.9E-10 76.4 10.1 67 138-206 81-153 (173)
376 cd01849 YlqF_related_GTPase Yl 98.0 2.4E-05 5.2E-10 75.4 9.0 41 165-205 1-42 (155)
377 KOG3886 GTP-binding protein [S 98.0 1.2E-05 2.7E-10 79.4 6.7 125 72-216 4-140 (295)
378 cd03114 ArgK-like The function 98.0 3.3E-05 7.2E-10 73.8 9.2 59 138-203 90-148 (148)
379 PRK00771 signal recognition pa 98.0 0.00036 7.9E-09 78.1 18.7 212 71-316 94-336 (437)
380 KOG0448 Mitofusin 1 GTPase, in 98.0 6.7E-05 1.4E-09 84.9 12.6 136 71-208 108-277 (749)
381 cd02036 MinD Bacterial cell di 98.0 0.00023 5E-09 69.9 15.2 82 141-224 64-146 (179)
382 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.1E-05 4.6E-10 83.8 6.9 57 147-205 7-64 (287)
383 PF03193 DUF258: Protein of un 97.9 9.4E-06 2E-10 77.9 3.6 66 73-154 36-101 (161)
384 cd04178 Nucleostemin_like Nucl 97.9 2E-05 4.3E-10 77.3 6.0 56 72-150 117-172 (172)
385 TIGR00064 ftsY signal recognit 97.9 0.00013 2.7E-09 77.1 12.3 133 70-205 70-230 (272)
386 PRK12289 GTPase RsgA; Reviewed 97.9 1.6E-05 3.5E-10 86.5 5.6 87 40-154 152-238 (352)
387 PRK12288 GTPase RsgA; Reviewed 97.9 1.1E-05 2.5E-10 87.7 4.3 65 74-154 207-271 (347)
388 PRK10416 signal recognition pa 97.9 0.00011 2.4E-09 79.2 11.7 133 71-205 113-272 (318)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 7.8E-05 1.7E-09 70.6 9.4 51 155-205 3-55 (141)
390 KOG0096 GTPase Ran/TC4/GSP1 (n 97.8 2.3E-05 4.9E-10 75.3 5.4 116 71-205 9-127 (216)
391 cd03112 CobW_like The function 97.8 0.00013 2.8E-09 70.6 10.9 63 139-204 86-158 (158)
392 PRK13796 GTPase YqeH; Provisio 97.8 2E-05 4.3E-10 86.8 5.6 86 40-151 136-221 (365)
393 TIGR00157 ribosome small subun 97.8 3.3E-05 7.1E-10 80.4 6.0 64 73-153 121-184 (245)
394 TIGR03596 GTPase_YlqF ribosome 97.8 2.8E-05 6E-10 82.5 5.2 88 40-150 80-173 (276)
395 PRK10867 signal recognition pa 97.7 0.0009 1.9E-08 74.8 17.0 209 72-316 100-344 (433)
396 cd03692 mtIF2_IVc mtIF2_IVc: t 97.7 0.00022 4.7E-09 61.1 9.4 72 376-451 4-82 (84)
397 KOG1707 Predicted Ras related/ 97.7 9.9E-05 2.1E-09 82.3 9.0 115 71-207 9-130 (625)
398 KOG2655 Septin family protein 97.7 0.00051 1.1E-08 73.8 14.0 142 73-227 22-194 (366)
399 KOG1547 Septin CDC10 and relat 97.7 0.0006 1.3E-08 68.0 13.0 139 73-225 47-218 (336)
400 cd01856 YlqF YlqF. Proteins o 97.7 3E-05 6.5E-10 76.1 3.8 88 40-150 78-170 (171)
401 TIGR00959 ffh signal recogniti 97.7 0.0016 3.4E-08 72.9 17.7 212 71-316 98-343 (428)
402 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 5.8E-05 1.3E-09 71.5 5.5 55 74-151 85-139 (141)
403 PRK09563 rbgA GTPase YlqF; Rev 97.7 3.1E-05 6.7E-10 82.6 3.7 88 41-151 84-177 (287)
404 TIGR00092 GTP-binding protein 97.7 0.00016 3.4E-09 78.7 9.1 82 73-175 3-109 (368)
405 PRK14974 cell division protein 97.7 0.00025 5.4E-09 76.7 10.6 63 138-205 221-292 (336)
406 PRK12289 GTPase RsgA; Reviewed 97.7 0.00016 3.4E-09 78.9 9.2 47 159-205 85-133 (352)
407 PF00448 SRP54: SRP54-type pro 97.6 0.00016 3.5E-09 72.4 8.3 131 73-205 2-153 (196)
408 TIGR00157 ribosome small subun 97.6 0.00012 2.6E-09 76.1 7.7 53 153-205 26-80 (245)
409 cd01854 YjeQ_engC YjeQ/EngC. 97.6 6.6E-05 1.4E-09 80.0 5.8 66 73-154 162-227 (287)
410 cd00066 G-alpha G protein alph 97.6 0.00048 1E-08 74.5 12.3 81 125-205 146-241 (317)
411 smart00275 G_alpha G protein a 97.6 0.00069 1.5E-08 74.0 13.4 82 124-205 168-264 (342)
412 PRK12727 flagellar biosynthesi 97.6 0.00055 1.2E-08 77.3 12.4 133 71-205 349-497 (559)
413 cd01851 GBP Guanylate-binding 97.6 0.00026 5.6E-09 72.7 8.9 91 70-175 5-103 (224)
414 COG0541 Ffh Signal recognition 97.6 0.00043 9.2E-09 75.4 10.8 214 71-316 99-343 (451)
415 cd01859 MJ1464 MJ1464. This f 97.6 5E-05 1.1E-09 73.2 3.4 50 41-94 74-123 (156)
416 COG1162 Predicted GTPases [Gen 97.6 8.1E-05 1.8E-09 77.9 4.9 66 73-154 165-230 (301)
417 PRK12726 flagellar biosynthesi 97.5 0.00022 4.7E-09 77.4 7.4 132 70-205 204-355 (407)
418 PRK00098 GTPase RsgA; Reviewed 97.5 0.00015 3.2E-09 77.8 6.0 23 73-95 165-187 (298)
419 PRK11889 flhF flagellar biosyn 97.5 0.00032 6.9E-09 76.3 8.4 131 71-205 240-390 (436)
420 PRK00098 GTPase RsgA; Reviewed 97.5 0.00026 5.7E-09 75.8 7.7 46 160-205 77-124 (298)
421 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00028 6.1E-09 75.2 7.7 46 160-205 75-122 (287)
422 KOG2485 Conserved ATP/GTP bind 97.5 0.00028 6.2E-09 73.3 7.3 92 73-180 144-236 (335)
423 COG1161 Predicted GTPases [Gen 97.4 0.00016 3.4E-09 78.3 5.6 56 73-151 133-188 (322)
424 PRK14721 flhF flagellar biosyn 97.4 0.00085 1.9E-08 74.6 10.6 130 72-205 191-339 (420)
425 TIGR03597 GTPase_YqeH ribosome 97.4 0.00061 1.3E-08 75.0 9.4 53 151-205 51-103 (360)
426 KOG4423 GTP-binding protein-li 97.4 2.9E-05 6.2E-10 74.2 -1.3 114 71-205 24-148 (229)
427 COG3640 CooC CO dehydrogenase 97.3 0.0011 2.4E-08 66.5 9.4 63 140-205 134-198 (255)
428 cd02038 FleN-like FleN is a me 97.3 0.0021 4.6E-08 60.7 11.0 63 140-204 45-109 (139)
429 KOG1487 GTP-binding protein DR 97.2 0.00082 1.8E-08 67.8 7.1 113 73-208 60-185 (358)
430 PRK05703 flhF flagellar biosyn 97.2 0.0014 2.9E-08 73.7 9.7 132 72-205 221-370 (424)
431 cd02042 ParA ParA and ParB of 97.2 0.002 4.3E-08 57.3 8.8 82 75-186 2-84 (104)
432 COG0523 Putative GTPases (G3E 97.2 0.005 1.1E-07 66.3 13.2 142 73-222 2-175 (323)
433 PRK12724 flagellar biosynthesi 97.1 0.0015 3.3E-08 72.0 9.1 129 73-205 224-372 (432)
434 PRK13849 putative crown gall t 97.1 0.0024 5.2E-08 65.8 10.2 64 138-203 82-151 (231)
435 cd02037 MRP-like MRP (Multiple 97.1 0.0015 3.2E-08 63.9 7.7 66 138-205 66-134 (169)
436 PRK01889 GTPase RsgA; Reviewed 97.1 0.0024 5.1E-08 70.2 10.0 45 161-205 110-155 (356)
437 cd03111 CpaE_like This protein 97.0 0.003 6.6E-08 56.6 8.6 59 141-201 44-106 (106)
438 PF09547 Spore_IV_A: Stage IV 97.0 0.0057 1.2E-07 66.5 12.0 150 73-227 18-215 (492)
439 PRK06995 flhF flagellar biosyn 97.0 0.003 6.4E-08 71.4 10.2 131 72-205 256-404 (484)
440 TIGR02475 CobW cobalamin biosy 97.0 0.015 3.3E-07 63.4 15.4 25 71-95 3-27 (341)
441 KOG1534 Putative transcription 97.0 0.005 1.1E-07 60.5 10.1 66 140-206 98-178 (273)
442 KOG1491 Predicted GTP-binding 97.0 0.002 4.4E-08 67.7 7.8 83 72-175 20-126 (391)
443 PRK13796 GTPase YqeH; Provisio 97.0 0.0033 7.1E-08 69.4 10.1 51 152-205 58-109 (365)
444 cd03688 eIF2_gamma_II eIF2_gam 97.0 0.0063 1.4E-07 54.1 9.7 68 369-440 2-90 (113)
445 PRK12723 flagellar biosynthesi 97.0 0.0033 7.1E-08 69.5 9.9 132 72-205 174-325 (388)
446 PRK12288 GTPase RsgA; Reviewed 97.0 0.0035 7.6E-08 68.4 10.1 45 161-205 118-163 (347)
447 PRK08099 bifunctional DNA-bind 97.0 0.0043 9.3E-08 69.1 10.9 31 69-99 216-246 (399)
448 PRK11537 putative GTP-binding 97.0 0.0048 1.1E-07 66.6 11.0 65 140-207 91-165 (318)
449 TIGR03371 cellulose_yhjQ cellu 97.0 0.011 2.3E-07 61.4 13.2 82 140-223 115-199 (246)
450 PHA02518 ParA-like protein; Pr 96.9 0.011 2.4E-07 59.6 12.5 66 138-205 75-146 (211)
451 PF02492 cobW: CobW/HypB/UreG, 96.9 0.0034 7.4E-08 61.9 8.1 68 139-208 84-157 (178)
452 cd02117 NifH_like This family 96.8 0.0075 1.6E-07 61.3 10.6 86 137-225 114-206 (212)
453 PRK14723 flhF flagellar biosyn 96.8 0.0046 9.9E-08 73.2 10.0 130 73-205 186-336 (767)
454 KOG0447 Dynamin-like GTP bindi 96.8 0.0078 1.7E-07 66.5 10.9 137 69-207 305-494 (980)
455 PRK06731 flhF flagellar biosyn 96.8 0.0067 1.5E-07 63.7 9.8 133 71-206 74-225 (270)
456 PRK13185 chlL protochlorophyll 96.7 0.014 3.1E-07 61.6 11.9 81 138-224 116-201 (270)
457 COG1419 FlhF Flagellar GTP-bin 96.7 0.005 1.1E-07 67.1 8.3 127 72-206 203-352 (407)
458 cd03702 IF2_mtIF2_II This fami 96.7 0.012 2.6E-07 51.4 9.3 75 374-453 2-79 (95)
459 CHL00072 chlL photochlorophyll 96.7 0.03 6.5E-07 59.8 14.1 82 139-226 115-201 (290)
460 cd02032 Bchl_like This family 96.7 0.022 4.7E-07 60.1 12.7 80 139-224 115-199 (267)
461 PRK01889 GTPase RsgA; Reviewed 96.6 0.0026 5.7E-08 69.9 5.2 25 73-97 196-220 (356)
462 PRK13695 putative NTPase; Prov 96.5 0.0084 1.8E-07 58.8 7.6 40 161-202 94-136 (174)
463 PRK13232 nifH nitrogenase redu 96.5 0.056 1.2E-06 57.2 14.4 85 137-223 114-203 (273)
464 cd04178 Nucleostemin_like Nucl 96.4 0.011 2.5E-07 57.9 8.3 41 165-205 1-43 (172)
465 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.016 3.5E-07 49.9 8.5 77 75-184 2-79 (99)
466 TIGR00257 IMPACT_YIGZ uncharac 96.4 0.041 8.8E-07 55.1 12.1 114 618-734 87-200 (204)
467 cd02040 NifH NifH gene encodes 96.4 0.026 5.6E-07 59.4 11.5 84 139-224 116-205 (270)
468 KOG1424 Predicted GTP-binding 96.4 0.0027 5.8E-08 70.2 3.6 57 72-151 314-370 (562)
469 PRK11568 hypothetical protein; 96.2 0.075 1.6E-06 53.2 12.5 114 618-734 87-200 (204)
470 TIGR03348 VI_IcmF type VI secr 96.2 0.017 3.6E-07 73.3 9.7 116 71-205 110-256 (1169)
471 PF05783 DLIC: Dynein light in 96.1 0.097 2.1E-06 59.3 14.4 22 72-93 25-46 (472)
472 TIGR01287 nifH nitrogenase iro 96.1 0.049 1.1E-06 57.7 11.6 83 139-223 115-203 (275)
473 KOG0780 Signal recognition par 96.1 0.031 6.7E-07 60.0 9.6 130 73-205 102-253 (483)
474 KOG3887 Predicted small GTPase 96.1 0.033 7.1E-07 56.0 9.2 116 73-208 28-151 (347)
475 KOG1533 Predicted GTPase [Gene 96.1 0.0056 1.2E-07 61.3 3.7 67 139-205 96-176 (290)
476 TIGR01281 DPOR_bchL light-inde 96.0 0.043 9.3E-07 57.9 10.8 81 138-224 114-199 (268)
477 PF14578 GTP_EFTU_D4: Elongati 96.0 0.054 1.2E-06 45.6 8.9 71 373-451 5-79 (81)
478 PRK13230 nitrogenase reductase 95.9 0.059 1.3E-06 57.2 11.3 87 138-225 115-206 (279)
479 cd03701 IF2_IF5B_II IF2_IF5B_I 95.9 0.059 1.3E-06 47.3 8.9 74 374-452 2-78 (95)
480 KOG3905 Dynein light intermedi 95.6 0.15 3.3E-06 53.4 12.2 22 71-92 51-72 (473)
481 KOG2484 GTPase [General functi 95.6 0.012 2.6E-07 63.4 4.3 59 70-151 250-308 (435)
482 KOG0082 G-protein alpha subuni 95.5 0.079 1.7E-06 57.3 10.3 81 124-204 179-274 (354)
483 cd03703 aeIF5B_II aeIF5B_II: T 95.5 0.076 1.6E-06 47.5 8.4 78 375-452 3-93 (110)
484 COG0552 FtsY Signal recognitio 95.3 0.064 1.4E-06 57.0 8.5 129 71-204 138-296 (340)
485 COG1162 Predicted GTPases [Gen 95.3 0.093 2E-06 55.4 9.6 44 164-207 80-125 (301)
486 COG3523 IcmF Type VI protein s 95.2 0.063 1.4E-06 66.4 9.0 114 73-206 126-270 (1188)
487 COG0563 Adk Adenylate kinase a 95.0 0.053 1.2E-06 53.4 6.5 107 74-200 2-112 (178)
488 PF06858 NOG1: Nucleolar GTP-b 95.0 0.054 1.2E-06 42.3 5.0 47 157-203 6-58 (58)
489 COG1618 Predicted nucleotide k 94.9 0.14 3.1E-06 48.7 8.7 48 155-204 92-142 (179)
490 PF07015 VirC1: VirC1 protein; 94.9 0.13 2.8E-06 52.3 9.0 64 139-204 83-152 (231)
491 TIGR01007 eps_fam capsular exo 94.8 0.1 2.2E-06 52.6 8.2 66 139-205 127-193 (204)
492 smart00010 small_GTPase Small 94.8 0.047 1E-06 49.5 5.2 19 74-92 2-20 (124)
493 KOG2423 Nucleolar GTPase [Gene 94.7 0.018 3.8E-07 61.7 2.3 59 70-151 305-363 (572)
494 KOG4181 Uncharacterized conser 94.7 0.7 1.5E-05 49.1 13.8 25 70-94 186-210 (491)
495 cd03116 MobB Molybdenum is an 94.7 0.14 3E-06 49.5 8.3 23 73-95 2-24 (159)
496 PF13555 AAA_29: P-loop contai 94.5 0.04 8.7E-07 44.0 3.3 21 74-94 25-45 (62)
497 PRK08084 DNA replication initi 94.5 0.49 1.1E-05 48.9 12.4 24 72-95 45-68 (235)
498 PRK13233 nifH nitrogenase redu 94.4 0.25 5.5E-06 52.2 10.4 80 138-224 117-207 (275)
499 TIGR03018 pepcterm_TyrKin exop 94.4 0.36 7.8E-06 48.8 11.0 57 141-200 150-207 (207)
500 PRK13235 nifH nitrogenase redu 94.4 0.55 1.2E-05 49.6 12.9 84 138-223 116-205 (274)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-151 Score=1212.65 Aligned_cols=685 Identities=63% Similarity=1.017 Sum_probs=663.5
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
.+.+++|||+|++|.++|||||++++||++|.+...++|+++ .+.||+++.|++||||++++.+++.|.++++|+||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiID 110 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---GATMDSMELERQRGITIQSAATYFTWRDYRINIID 110 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccC---ceeeehHHHHHhcCceeeeceeeeeeccceeEEec
Confidence 345689999999999999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
||||+||.-++++|+++.|+||+|+|++.|++.||..+|+++.++++|.|.|+||||+.++++.+++++++.+|..+++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
+|+|++..+.|.|++|+++++++||++++|..+...+||+++.+.+.+.|++|+|.+++.||++.|.||++.+++.++|+
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCccccccccccc-CccceeeccCCCCC-CeEEEEEEEeecC
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQK-NNEEKVILSGNPDG-PLVALAFKLEEGR 384 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~~-p~~~~V~k~~~d~ 384 (762)
.++|+.++.+.|+||+||||++|.||++|||+|++|||+|.|..++.+..+ +.++++.+....++ ||++++||+..++
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~ 350 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGR 350 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecC
Confidence 999999999999999999999999999999999999999999999987732 33344555544444 9999999999999
Q ss_pred CccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEcccccccCceeecC-CCccccccC
Q 004311 385 FGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDG-SVKYTMTSM 463 (762)
Q Consensus 385 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~GdtL~~~-~~~~~l~~~ 463 (762)
+|.+.|+|||+|+|++||.|||.++|+++|+.+|++|+++..++|+++.|||||++.|+++.+|||+++. .....+..+
T Consensus 351 fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidcasGDTftd~~~~~~~m~si 430 (721)
T KOG0465|consen 351 FGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDCASGDTFTDKQNLALSMESI 430 (721)
T ss_pred ccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeeccccccCceeccCccccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 667888999
Q ss_pred CCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceee
Q 004311 464 HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 543 (762)
Q Consensus 464 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~ 543 (762)
++|+||++++|+|.+.+|.++|.+||.++.+|||+|++..|.|++|++|+|||||||||..+||+++||+++++++|+|+
T Consensus 431 ~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~Va 510 (721)
T KOG0465|consen 431 HIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQVA 510 (721)
T ss_pred ecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004311 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (762)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 623 (762)
|||||.+++++.+.||||+||.|||+++...++|++++....+.|.+++.|+.+|++|++++++||.++++.|||.|.|+
T Consensus 511 yRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl 590 (721)
T KOG0465|consen 511 YRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPL 590 (721)
T ss_pred ehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcc
Confidence 99999999999999999999999999999999999988766789999999999999999999999999999999999999
Q ss_pred eEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCC
Q 004311 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD 703 (762)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~ 703 (762)
.|+++.|.||.+|++||++.+|+.|++.||+ +||.+|+|++|||||.|+|.+|+|++|.|+++|++|+|.|.+.+..++
T Consensus 591 ~~~r~~l~Dga~h~vds~elaf~~at~~a~r-~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~ 669 (721)
T KOG0465|consen 591 SNLRIVLQDGAHHPVDSSELAFMKATRNAFR-EAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSED 669 (721)
T ss_pred cceEEEEecCCcCcccccHHHHHHHHHHHHH-HHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999998899
Q ss_pred eEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHh
Q 004311 704 DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 755 (762)
Q Consensus 704 ~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~ 755 (762)
.++|+|.+||++||||+++|||+|+|+|.|+|+|++|++++.+.|++++.++
T Consensus 670 ~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~~ 721 (721)
T KOG0465|consen 670 YKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHKY 721 (721)
T ss_pred eEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999987653
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-143 Score=1224.68 Aligned_cols=684 Identities=50% Similarity=0.830 Sum_probs=654.8
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDT 147 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDT 147 (762)
.+++|||+|+||+|||||||+++||+.+|.+++.|++++| ++++|++++|++|||||+++.+++.|++ ++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCC
Confidence 5789999999999999999999999999999999999999 8999999999999999999999999996 99999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||+||..++.++++.+|+||+|+||.+|++.||+.+|+++.++++|+++|+||||+.++++...++++..+|+..+.++
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
|+||+..+.|.|++|++.++++.|.. |......++|.+..+...++|..+++.+++.||+++++||++.+++.+++.+
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999986 5555568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCcc-ceeeccCCCCCCeEEEEEEEeecCC-
Q 004311 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE-EKVILSGNPDGPLVALAFKLEEGRF- 385 (762)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~V~k~~~d~~- 385 (762)
.|++.+..+.+.|++|+||.+|.|++.|||++++++|+|.+.+.+....+++. +.....++.++|++|+|||+..|++
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~ 321 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFV 321 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCC
Confidence 99999999999999999999999999999999999999999886644433322 2222355779999999999999998
Q ss_pred ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccCC
Q 004311 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (762)
|+++|+|||||+|++||.|+|.+.+++++|.+|+.|+|++++++++++||||+++.|| ++.+|||||+.+.+..++.+.
T Consensus 322 g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~ 401 (697)
T COG0480 322 GKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESME 401 (697)
T ss_pred CeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999887668889999
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeE
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (762)
+|+||++++|+|++++|++||.++|++|++|||++++..|+||||++|+|||||||||+++||+++|||++.+++|+|+|
T Consensus 402 ~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~Y 481 (697)
T COG0480 402 FPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAY 481 (697)
T ss_pred CCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004311 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (762)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 624 (762)
||||.+++...++|++|+||++||+++++.+||++++. ++.|.+.+.++.+|++|+++|++||+|++++|||+||||+
T Consensus 482 rETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~--~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~ 559 (697)
T COG0480 482 RETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGS--GFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVV 559 (697)
T ss_pred EEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCc--ceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceE
Confidence 99999998899999999999999999999999999764 8999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCC--
Q 004311 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-- 702 (762)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~-- 702 (762)
||+|+|.|+.||++||++++|+.|+++||+ +|+++|+|+||||||+|+|.+|++|+|+|+++|++|||+|++++..+
T Consensus 560 dvkv~L~dgs~h~vdss~~af~~a~~~a~~-~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~ 638 (697)
T COG0480 560 DVKVTLLDGSYHEVDSSEMAFKIAASLAFK-EAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGG 638 (697)
T ss_pred eeEEEEEcCccccCCCCHHHHHHHHHHHHH-HHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCC
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999883
Q ss_pred CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhhcccC
Q 004311 703 DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 760 (762)
Q Consensus 703 ~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~~~~~ 760 (762)
++..|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|.+.+++|+.+.++.++
T Consensus 639 ~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~~ 696 (697)
T COG0480 639 GLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRKG 696 (697)
T ss_pred ceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhhcC
Confidence 5689999999999999999999999999999999999999999999999998877653
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=5.7e-132 Score=1166.42 Aligned_cols=683 Identities=49% Similarity=0.824 Sum_probs=647.6
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..++||||+|+||+|+|||||+|+|++.+|.+.+.+.++++ ++++|+.+.|++||+|+++....+.|++++++||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDT 82 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKDHRINIIDT 82 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeC
Confidence 46789999999999999999999999999999888888887 889999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||||+.+++....++++++.++..+.+.
T Consensus 83 PG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 162 (693)
T PRK00007 83 PGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPI 162 (693)
T ss_pred CCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeC-CCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
++|++...+|.|++|++.+..+.|.. ..+..+...++|....+++.+++++|+|.+++.||++|++||++.+++.++++
T Consensus 163 ~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~ 242 (693)
T PRK00007 163 QLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK 242 (693)
T ss_pred EecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHH
Confidence 99999999999999999999999953 44666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccc-cCccceeeccCCCCCCeEEEEEEEeecCC
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ-KNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 385 (762)
+.+++++..+.|+||+|+||++|.|++.|||+|++++|+|.+++...... +.........|++++|++++|||+.+|++
T Consensus 243 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 322 (693)
T PRK00007 243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPF 322 (693)
T ss_pred HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCC
Confidence 99999999999999999999999999999999999999998765432111 11123455678999999999999999998
Q ss_pred -ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccC
Q 004311 386 -GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSM 463 (762)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~ 463 (762)
|+++|+|||||+|++||+|++.+.++.++|.+||.++|.++.+++++.|||||++.|+ ++++||||++.+.+..++++
T Consensus 323 ~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~ 402 (693)
T PRK00007 323 VGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESM 402 (693)
T ss_pred CCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCC
Confidence 9999999999999999999999888899999999999999999999999999999999 88999999988777778888
Q ss_pred CCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceee
Q 004311 464 HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 543 (762)
Q Consensus 464 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~ 543 (762)
.+|+|+++++|+|.++.|.++|.++|++|.+|||+|+|.+|++|||++|+||||||||||++||+++|++++++++|+|+
T Consensus 403 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~ 482 (693)
T PRK00007 403 EFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVA 482 (693)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004311 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (762)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 623 (762)
|||||.++++..+++++|+||++||++++++++|++++ .++.|.+++.++.+|++|+++|++||+|||++||||||||
T Consensus 483 yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~--~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv 560 (693)
T PRK00007 483 YRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPG--KGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPV 560 (693)
T ss_pred EeecccCccccCcccccccCCCCceEEEEEEEEeCCCC--CCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCce
Confidence 99999999888899999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCC
Q 004311 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD 703 (762)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~ 703 (762)
+||+|+|+|+.+|++||++++|+.|+++||+ +|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.+++..++
T Consensus 561 ~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~-~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~ 639 (693)
T PRK00007 561 VDVKVTLFDGSYHDVDSSEMAFKIAGSMAFK-EAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGG 639 (693)
T ss_pred eeEEEEEEecccCCCCCcHHHHHHHHHHHHH-HHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccCC
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999988777
Q ss_pred eEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004311 704 DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 756 (762)
Q Consensus 704 ~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~ 756 (762)
.+.|+|.+|++|++||+++||++|+|+|+|+++|+||++||++.+++|++++.
T Consensus 640 ~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 692 (693)
T PRK00007 640 AKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 (693)
T ss_pred cEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999998764
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.4e-131 Score=1164.13 Aligned_cols=683 Identities=49% Similarity=0.819 Sum_probs=649.0
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..++||||+|+||+|+|||||+++|++.+|.+.+.+.++++ ++++|+.++|++||+|+++....+.|++++++||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDT 80 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKGHRINIIDT 80 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcC
Confidence 35789999999999999999999999999998888888877 889999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+++||||+.+++....++++++.++..+.+.
T Consensus 81 PG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 81 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPI 160 (691)
T ss_pred CCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeC-CCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
++|++...+|.|++|++.+..+.|.. ..+..+...++|.++.+++.+++++|+|.+++.||++|++||++.+++.+++.
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999954 34667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~- 385 (762)
..+++.+..++|+||+|+||++|.|++.|||+|++++|+|.+++..+.............|++++||+++|||+++|++
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 320 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFV 320 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCC
Confidence 9999999999999999999999999999999999999999877654332211223455778999999999999999998
Q ss_pred ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccCC
Q 004311 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (762)
|+++|+|||||+|++||.|++.+.+++++|.+||.++|++..+++++.|||||+|.|+ ++++||||++......++++.
T Consensus 321 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~ 400 (691)
T PRK12739 321 GRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESME 400 (691)
T ss_pred CeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 889999999887777788888
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeE
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (762)
+|+|+++++|+|.+++|+++|.++|++|.++||+|+|.+|++|||++|+||||||||+|++||+++|++++++++|.|+|
T Consensus 401 ~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~y 480 (691)
T PRK12739 401 FPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAY 480 (691)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004311 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (762)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 624 (762)
||||.+.++..+++++|+||++||++++++++|++++ .++.|.+++.++.+|++|+++|++||+|||++||||||||+
T Consensus 481 rEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~--~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~ 558 (691)
T PRK12739 481 RETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEG--KGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMV 558 (691)
T ss_pred eeccCCcccccceeccccCCCCceeEEEEEEEECCCC--CCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCcee
Confidence 9999999988899999999999999999999999875 48999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCe
Q 004311 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 704 (762)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 704 (762)
||+|+|.|+.+|+++|++++|+.|+++||+ +|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..++.
T Consensus 559 ~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~-~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~ 637 (691)
T PRK12739 559 DVKATLYDGSYHDVDSSELAFKIAASMALK-EAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGA 637 (691)
T ss_pred eEEEEEEEeccCCCCCcHHHHHHHHHHHHH-HHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCc
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999987788
Q ss_pred EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004311 705 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 756 (762)
Q Consensus 705 ~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~ 756 (762)
..|+|++|++|+|||+++||++|+|+|+|+++|+||+++|++.+++|+++..
T Consensus 638 ~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (691)
T PRK12739 638 QIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKRK 689 (691)
T ss_pred EEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999997763
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4.9e-131 Score=1160.54 Aligned_cols=682 Identities=49% Similarity=0.826 Sum_probs=649.4
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
..+++||||+|+||+|||||||+|+|++.+|.+.+.+.++++ ++++|+.+.|+++|+|+++....+.|++++++|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g---~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG---AATMDWMEQEKERGITITSAATTVFWKGHRINIID 81 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence 346789999999999999999999999999999888878877 78999999999999999999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
||||.+|..++.++++.+|++|+|+|+.+|+..|++.+|+++.+.++|+++|+||||+.++++.+.++++++.++..+.+
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVP 161 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
.++|++...+|.|++|++.+..++|+++.+..+...++|+++.+++.+++++|+|.+++.||++|++||++.+++.+++.
T Consensus 162 ~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 162 IQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999998878888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~- 385 (762)
+.+++++..+.++||+|+||++|.|++.|||+|++++|+|.+++.......+........|++++||+|+|||+.+|++
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 321 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFV 321 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCC
Confidence 9999999999999999999999999999999999999999876543221111123445678999999999999999998
Q ss_pred ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccCC
Q 004311 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (762)
|+++|+|||||+|+.||+|+|...++++++.+|+.++|.+..+++++.|||||+|.|+ ++.+||||++......++++.
T Consensus 322 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 401 (689)
T TIGR00484 322 GQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERME 401 (689)
T ss_pred CeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCC
Confidence 9999999999999999999999988899999999999999999999999999999999 789999999887777788888
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeE
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (762)
+|+|+++++|+|.++.|.+||.++|++|.++||+|+|.+|++|||++|+||||||||||++||+++|++++++++|.|+|
T Consensus 402 ~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~y 481 (689)
T TIGR00484 402 FPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAY 481 (689)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004311 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (762)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 624 (762)
||||.++++..+++++|+||++||++|+++++|++++ ++.|.+++.++.+|++|+++|++||+|||++||||||||+
T Consensus 482 rEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~---g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~ 558 (689)
T TIGR00484 482 RETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK---GYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVV 558 (689)
T ss_pred eecccCccccccccccccCCCCceEEEEEEEEECCCC---CcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCcee
Confidence 9999999888899999999999999999999999864 8999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCe
Q 004311 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 704 (762)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 704 (762)
||+|+|+++.+|+++|++++|+.|+++||+ +|+++|+|+||||||+|+|.||++++|+||++|++|||+|.+++..++.
T Consensus 559 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~-~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~ 637 (689)
T TIGR00484 559 DIKATLFDGSYHDVDSSEMAFKLAASLAFK-EAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNV 637 (689)
T ss_pred eEEEEEEEeecCCCCCCHHHHHHHHHHHHH-HHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccCCc
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999887788
Q ss_pred EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHh
Q 004311 705 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 755 (762)
Q Consensus 705 ~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~ 755 (762)
+.|+|++|++|+|||+++||++|+|+|+|+++|+||++||++.+++|++++
T Consensus 638 ~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~ 688 (689)
T TIGR00484 638 QKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKR 688 (689)
T ss_pred EEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999765
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=3.6e-127 Score=1131.02 Aligned_cols=679 Identities=48% Similarity=0.795 Sum_probs=642.0
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
.++++|||+|+||+|||||||+++|++.+|.+.+.+.++.+ ++++|+.+.|+++|+|+......+.|+++.++||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG---TTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC---cccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 45789999999999999999999999999998888878777 788999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||.+|..++..+++.+|++|+|+|+.++++.++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPL 160 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeCCC-CCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSN-GEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~-g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
|+|+..+..|.|++|+..++.+.|...+ +..+...++|+.+.+++.+++++|+|.+++.||+++++||++.+++.+++.
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 9999999999999999999999996543 566777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~- 385 (762)
..+++.+..+.++|||||||++|.||+.|||+|++++|+|.+++..+.... ........|++++|++++|||+++|++
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 319 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKD-NGKPVKVDPDPEKPLLALVFKVQYDPYA 319 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCC-CCCceeecCCCCCCeEEEEEEeeecCCC
Confidence 999999999999999999999999999999999999999987654433221 111233568899999999999999998
Q ss_pred ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccCC
Q 004311 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (762)
|+++|+|||||+|++||+|++.+.++.+++.+||.++|.+..+++++.||||+++.|+ ++.+||||++......++++.
T Consensus 320 G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 399 (687)
T PRK13351 320 GKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLT 399 (687)
T ss_pred ceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 889999999887666777788
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeE
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (762)
+|+|+++++|+|.+++|.++|.++|++|.+|||+|++..|++|||++|+||||||||++++||+++|++++++++|.|+|
T Consensus 400 ~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y 479 (687)
T PRK13351 400 FPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAY 479 (687)
T ss_pred CCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004311 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (762)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 624 (762)
||||.+.++..+++++++||++||++|+++++|++++ .++.|.+.+.++.+|++|+++|++||++||++||||||||+
T Consensus 480 ~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~--~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~ 557 (687)
T PRK13351 480 RETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERG--AGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVT 557 (687)
T ss_pred EeeccccccccceeeeccCCCceEEEEEEEEEECCCC--CCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCcee
Confidence 9999999888899999999999999999999999876 36999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCe
Q 004311 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 704 (762)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 704 (762)
||+|+|+|+.+|+++|++++|+.|+++||+ +|+++|+|+||||||+|||.||++++|+||++|++|||+|++++..++.
T Consensus 558 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~-~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 636 (687)
T PRK13351 558 DLRVTVLDGKYHPVDSSESAFKAAARKAFL-EAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDG 636 (687)
T ss_pred eEEEEEEEecCCCCCCCHHHHHHHHHHHHH-HHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCc
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999876554
Q ss_pred EE-EEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHH
Q 004311 705 SV-ITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVK 753 (762)
Q Consensus 705 ~~-i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~ 753 (762)
.. |+|++|++|++||+++||++|+|+|+|+|+|+||++||++.+++|+.
T Consensus 637 ~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 637 EVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred EEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 45 99999999999999999999999999999999999999999999874
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-120 Score=1071.66 Aligned_cols=665 Identities=51% Similarity=0.831 Sum_probs=629.9
Q ss_pred EeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHHHH
Q 004311 78 SAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEV 157 (762)
Q Consensus 78 iG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~ 157 (762)
+||+|||||||+++|++.+|.+.+.++++++ .+++|+.+.|++||+|+......+.|+++.++|||||||.+|..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG---TTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC---cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHH
Confidence 6999999999999999999999888878777 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecCCCcCcc
Q 004311 158 ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQF 237 (762)
Q Consensus 158 ~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~ 237 (762)
.++++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..++..+.++++++.++..+.+.++|+..+..|
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCc
Q 004311 238 QGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARK 317 (762)
Q Consensus 238 ~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~ 317 (762)
.|++|++.++.++|+ ++..+...++|+++.+++.++++.|+|.+++.||+++++|+++.+++.+++...+++.+..+.
T Consensus 158 ~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~ 235 (668)
T PRK12740 158 TGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235 (668)
T ss_pred eEEEECccceEEEec--CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998 567777788999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEee
Q 004311 318 FIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEG 396 (762)
Q Consensus 318 ~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG 396 (762)
|+||+++||++|.|++.|||+|+.++|+|.+++..... .........|++++|++++|||++++++ |+++|+|||||
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG 313 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSG 313 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCC--CCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeee
Confidence 99999999999999999999999999999865542110 1111233468899999999999999998 99999999999
Q ss_pred eecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccCCCCcceeeeeee
Q 004311 397 VIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMHVPEPVMSLAVQ 475 (762)
Q Consensus 397 ~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~~ie 475 (762)
+|++||+|++.+.++.++|.+|+.++|++.++++++.|||||++.|+ ++.+||||++......++++.+++|+++++|+
T Consensus 314 ~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~ 393 (668)
T PRK12740 314 TLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIE 393 (668)
T ss_pred EEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEE
Confidence 99999999999988889999999999999999999999999999999 78999999987767778888899999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeEEeeecccccee
Q 004311 476 PVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFD 555 (762)
Q Consensus 476 p~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~ 555 (762)
|.+++|.++|.++|++|+++||+|+|..|+++||++|.|+|||||||+++||+++|++++.+++|+|+|||||.++++..
T Consensus 394 p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~ 473 (668)
T PRK12740 394 PKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGH 473 (668)
T ss_pred ECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEeccc
Q 004311 556 YLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGAS 635 (762)
Q Consensus 556 ~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~ 635 (762)
+++++++||+++|++|+++++|++.+ .++.|.+++.++.+|++|+++|++||++||++||||||||+||+|+|+++.+
T Consensus 474 ~~~~~~~~~~~~~~~v~l~~ep~~~~--~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~ 551 (668)
T PRK12740 474 GRHKKQSGGHGQFGDVWLEVEPLPRG--EGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSY 551 (668)
T ss_pred ceeccccCCCCceEEEEEEEEECCCC--CceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccc
Confidence 99999999999999999999999865 4799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhh
Q 004311 636 HAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNN 715 (762)
Q Consensus 636 ~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e 715 (762)
|+++|++++|+.|+++||+ +|+++|+|+||||||+|||++|++++|+|+++|++|||+|++++..++.+.|+|++|++|
T Consensus 552 ~~~~s~~~~~~~a~~~a~~-~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e 630 (668)
T PRK12740 552 HSVDSSEMAFKIAARLAFR-EALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAE 630 (668)
T ss_pred ccCCCCHHHHHHHHHHHHH-HHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999987655599999999999
Q ss_pred hhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHH
Q 004311 716 MFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLV 752 (762)
Q Consensus 716 ~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~ 752 (762)
++||+++||++|+|+|+|+++|+||+++|++.+++|+
T Consensus 631 ~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 631 MFGYATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred hhchHHHHHHhcCCeEEEEEEecccccCCHHHHHHHh
Confidence 9999999999999999999999999999999998886
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=2.5e-118 Score=1067.01 Aligned_cols=674 Identities=27% Similarity=0.396 Sum_probs=578.9
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--------
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------- 138 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------- 138 (762)
.++++||||||+||+|||||||+++|++.+|.+.+. ..++ ++++|+.++|++||+|+++....+.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGD---VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 357899999999999999999999999999988763 3333 678999999999999999999999884
Q ss_pred --------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC-----
Q 004311 139 --------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----- 205 (762)
Q Consensus 139 --------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~----- 205 (762)
++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.+.++|+++|+||||+.
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhc
Confidence 6889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C----CChhHHHHHHHHH---hccce-eeeee-cCCC----cCccccee------------------eccccee---E
Q 004311 206 --G----ADPWKVLDQARSK---LRHHC-AAVQV-PMGL----EDQFQGLV------------------DLVQLTA---Y 249 (762)
Q Consensus 206 --~----~~~~~~~~~i~~~---l~~~~-~~~~~-pi~~----~~~~~g~i------------------dl~~~~~---~ 249 (762)
+ +++.+++++++.. ++... .++++ |++. ++.+.||. |++..+. +
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~ 248 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 3 5677888888833 22111 12334 5544 33444443 3333222 3
Q ss_pred EeeCCCCCeEEecC--CC---hhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC--CCCChhHHHHHHHHHHhcCcceeee
Q 004311 250 YFHGSNGEKIVTGE--VP---ADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPVF 322 (762)
Q Consensus 250 ~~~~~~g~~~~~~~--i~---~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~ 322 (762)
||++ .++.+...+ .+ .++.+++++++.+|++.+++.|++++++|+++ .+++.+++.. +++.+....+.|+|
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~ 326 (843)
T PLN00116 249 FFDP-ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWL 326 (843)
T ss_pred eEcC-CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhc
Confidence 6654 345454444 33 34677778899999999999999999999987 5799999988 99999999999999
Q ss_pred cccccCCCchHHHHHHHHhcCCCCcccccccccc------cCccceeeccCCCCCCeEEEEEEEeecCC-cc-EEEEEEE
Q 004311 323 MGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLRIY 394 (762)
Q Consensus 323 ~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~-l~~~RV~ 394 (762)
++| +.|||+|++++|+|.+++..+... ..........|++++|++++|||+.++++ |+ ++|+|||
T Consensus 327 ~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVy 399 (843)
T PLN00116 327 PAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
T ss_pred CCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEE
Confidence 876 789999999999998765543321 12223456778999999999999999886 77 9999999
Q ss_pred eeeecCCCeEE----ecCCCeE-----EEcCeEEEeecCcccccccccCCCEEEEccc-ccc-cCceeecCC--Cccccc
Q 004311 395 EGVIRKGDFII----NVNTGKK-----IKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCA-SGDTFTDGS--VKYTMT 461 (762)
Q Consensus 395 sG~l~~g~~v~----~~~~~~~-----~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~-~GdtL~~~~--~~~~l~ 461 (762)
||+|++||+|+ |.+.+++ ++|.+||.++|++.++|+++.|||||+|.|+ ++. +||||++.. .+..++
T Consensus 400 sGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~ 479 (843)
T PLN00116 400 SGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIK 479 (843)
T ss_pred eeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCcccc
Confidence 99999999998 4444433 5899999999999999999999999999999 554 499998876 566778
Q ss_pred cCCCC-cceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc--CceEEEe
Q 004311 462 SMHVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY--KVDATVG 538 (762)
Q Consensus 462 ~~~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~v~v~~~ 538 (762)
++.+| +|+++++|+|.+++|+++|.+||++|.+|||+|++.. ++|||++|+||||||||||++||+++| |++++++
T Consensus 480 ~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s 558 (843)
T PLN00116 480 AMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVS 558 (843)
T ss_pred ccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEc
Confidence 88888 9999999999999999999999999999999999864 899999999999999999999999999 9999999
Q ss_pred CceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCC------------------------------------
Q 004311 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------------------------ 582 (762)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~------------------------------------ 582 (762)
+|+|+|||||.++++..++++ + +++|++|+++++|++++.
T Consensus 559 ~p~V~yrETI~~~~~~~~~~~-~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (843)
T PLN00116 559 DPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKI 634 (843)
T ss_pred CCeEEEEecccccccCcEEEe-c---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCe
Confidence 999999999999987766633 3 678899999999997641
Q ss_pred -------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEeccccc--CCCcHHHHHHHHHHHH
Q 004311 583 -------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAAIYAF 653 (762)
Q Consensus 583 -------~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~ 653 (762)
.+++.|.+++.|..+.++++++|++||+|||++||||||||+||+|+|.|+.+|+ .++.+++|+.|+++||
T Consensus 635 ~~~gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~ 714 (843)
T PLN00116 635 WCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVI 714 (843)
T ss_pred eeecCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHH
Confidence 1238899998887777778889999999999999999999999999999999998 5667789999999999
Q ss_pred HHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCC--eEEEEEEechhhhhchHHHHhhhcCCeE
Q 004311 654 RQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKG 731 (762)
Q Consensus 654 ~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lrs~T~G~a 731 (762)
+ +|+++|+|+||||||+|||+||++++|+||+||++|||+|+++++.++ .+.|+|++|++|||||+++||++|+|+|
T Consensus 715 ~-~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g 793 (843)
T PLN00116 715 Y-ASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 793 (843)
T ss_pred H-HHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCC
Confidence 9 999999999999999999999999999999999999999999988654 4899999999999999999999999999
Q ss_pred EEEEEeCceecCChhH------HHHHHHHhhcccC
Q 004311 732 EFTMEYKEHAPVSQDV------QLQLVKTHNAGRG 760 (762)
Q Consensus 732 ~~~~~f~~y~~v~~~~------~~~i~~~~~~~~~ 760 (762)
+|+|+|+||++||+|+ +.+++.+.|++++
T Consensus 794 ~~~~~f~~y~~v~~dp~~~~~~a~~~~~~~R~rKG 828 (843)
T PLN00116 794 FPQCVFDHWDMMSSDPLEAGSQAAQLVADIRKRKG 828 (843)
T ss_pred eEEEEeceeEECCCCCCCchhHHHHHHHHHHhhCC
Confidence 9999999999998655 5566776666654
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=5.8e-117 Score=1052.84 Aligned_cols=669 Identities=28% Similarity=0.455 Sum_probs=577.5
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---------
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------- 138 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 138 (762)
++++||||+|+||+|||||||+++|++.+|.+++. ..+. ++++|++++|++||+|++++...+.|.
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~ 89 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK--NAGD---ARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDK 89 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeecccchhhHhhcceeeccceEEEeecccccccCC
Confidence 46789999999999999999999999999988663 2222 567999999999999999998888886
Q ss_pred -CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC----C-------
Q 004311 139 -DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----G------- 206 (762)
Q Consensus 139 -~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~----~------- 206 (762)
++.++|+|||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||+. +
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CChhHHHHHHHHHhc-----------cceeeeeecCCCcC--------cccce--------eecccce---eEEeeCCCC
Q 004311 207 ADPWKVLDQARSKLR-----------HHCAAVQVPMGLED--------QFQGL--------VDLVQLT---AYYFHGSNG 256 (762)
Q Consensus 207 ~~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~~--------~~~g~--------idl~~~~---~~~~~~~~g 256 (762)
+++.+++++++..++ ..+.+.++|++.+. .|.|+ ++.+... .++|++ .+
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~-~~ 248 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA-KT 248 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC-CC
Confidence 677889999998765 36788899997765 23333 3444333 336643 35
Q ss_pred CeEEecC-------CChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc--CCCCChhHH--HH-HHHHHHhcCcceeeecc
Q 004311 257 EKIVTGE-------VPADMETFVAEKRRELIELVSEVDDKLGDMFLS--DEPISSGDL--EE-AIRRATVARKFIPVFMG 324 (762)
Q Consensus 257 ~~~~~~~-------i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~~ 324 (762)
+.+...+ +|+.|.+++++++.+|++.+++.||+++++|++ +.+++.+++ .. .+.+.+. +.|+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv--- 324 (836)
T PTZ00416 249 KKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA--- 324 (836)
T ss_pred CEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch---
Confidence 5454443 456688999999999999999999999999999 667888774 23 5666666 899998
Q ss_pred cccCCCchHHHHHHHHhcCCCCccccccccc------ccCccceeeccCCCCCCeEEEEEEEeecCC-cc-EEEEEEEee
Q 004311 325 SAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLRIYEG 396 (762)
Q Consensus 325 SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~-l~~~RV~sG 396 (762)
++.|||+|++++|+|.+++..+.. ...........|++++|++++|||+.++++ |+ ++|+|||||
T Consensus 325 -------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SG 397 (836)
T PTZ00416 325 -------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSG 397 (836)
T ss_pred -------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEee
Confidence 589999999999999876544321 112222456778999999999999999997 88 899999999
Q ss_pred eecCCCeEE----ecCCCeEE-----EcCeEEEeecCcccccccccCCCEEEEccc-c--cccCceeecCCCccccccCC
Q 004311 397 VIRKGDFII----NVNTGKKI-----KVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D--CASGDTFTDGSVKYTMTSMH 464 (762)
Q Consensus 397 ~l~~g~~v~----~~~~~~~~-----ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~--~~~GdtL~~~~~~~~l~~~~ 464 (762)
+|+.||+|+ +.+.+.++ +|.+||.++|++..++++|.|||||+|.|+ + +++| ||++......++++.
T Consensus 398 tL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~ 476 (836)
T PTZ00416 398 TVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMK 476 (836)
T ss_pred eecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccc
Confidence 999999999 44444444 599999999999999999999999999999 5 7899 999887677777887
Q ss_pred CC-cceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-CceEEEeCcee
Q 004311 465 VP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGKPRV 542 (762)
Q Consensus 465 ~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~~~p~V 542 (762)
++ +|+++++|+|.+++|+++|.++|++|.+|||++.+.. ++|||++|+||||+|||+|++||+++| ++++++++|+|
T Consensus 477 ~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V 555 (836)
T PTZ00416 477 YSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVV 555 (836)
T ss_pred cCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEE
Confidence 76 9999999999999999999999999999999999965 899999999999999999999999999 99999999999
Q ss_pred eEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCC----------------------CCCce-----------ee
Q 004311 543 NFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS----------------------PAKFE-----------FE 589 (762)
Q Consensus 543 ~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~----------------------~~~~~-----------~~ 589 (762)
+|||||.+.++..+++++++|+ ++|+++++|++++. ..++. |.
T Consensus 556 ~yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~ 631 (836)
T PTZ00416 556 SYRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFG 631 (836)
T ss_pred EEEEEecccccceEEEECCCCC----eeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeecc
Confidence 9999999999989999998765 38999999997641 01233 44
Q ss_pred ecccCCCC------CcchHH----HHHHHHHHHHhcCCcCCCCeeEEEEEEEeccccc--CCCcHHHHHHHHHHHHHHHH
Q 004311 590 NLLVGQAI------PSNFIP----AIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAAIYAFRQQC 657 (762)
Q Consensus 590 ~~~~~~~~------~~~~~~----~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~~a 657 (762)
.++.|+.+ +.+|++ +|++||+||+++||||||||+||+|+|+++.+|+ .++++++|+.|+++||+ +|
T Consensus 632 ~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~-~a 710 (836)
T PTZ00416 632 PENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFY-AC 710 (836)
T ss_pred CCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHH-HH
Confidence 45555554 555555 9999999999999999999999999999999998 78899999999999999 99
Q ss_pred HHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCC--eEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004311 658 YAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 735 (762)
Q Consensus 658 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~ 735 (762)
+++|+|+||||||+|+|+||++++|+|++||++|||+|+++++.++ .+.|+|++|++|||||+++||++|+|+|+|+|
T Consensus 711 ~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~ 790 (836)
T PTZ00416 711 ELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQC 790 (836)
T ss_pred HhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEE
Confidence 9999999999999999999999999999999999999999988655 48999999999999999999999999999999
Q ss_pred EeCceecCChhH------HHHHHHHhhcccC
Q 004311 736 EYKEHAPVSQDV------QLQLVKTHNAGRG 760 (762)
Q Consensus 736 ~f~~y~~v~~~~------~~~i~~~~~~~~~ 760 (762)
+|+||++||+++ +++++.+.|++++
T Consensus 791 ~F~~y~~vp~dp~~~~~~a~~~~~~~R~rKG 821 (836)
T PTZ00416 791 VFDHWQVVPGDPLEPGSKANEIVLSIRKRKG 821 (836)
T ss_pred EeccEEECCCCCCCchhHHHHHHHHHHHhCC
Confidence 999999998766 5667777666653
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.3e-113 Score=1013.57 Aligned_cols=635 Identities=32% Similarity=0.476 Sum_probs=554.1
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEE----EeecCeeEE
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS----CAWKDYQIN 143 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~i~ 143 (762)
+++++|||+|+||.|||||||+++|++.+|.+++. ..++ .+++|+.++|++||+|+.+.... ++|++++++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~---~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQ---QLYLDFDEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCc---eeecCCCHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 45789999999999999999999999999988763 2333 56899999999999999987765 678899999
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccc
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (762)
|||||||.+|..++.++++.+|++|+|+|+.+|+..+|+.+|+.+...++|.++|+||+|+..+++....+++++.++..
T Consensus 90 liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~ 169 (720)
T TIGR00490 90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKI 169 (720)
T ss_pred EEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred eeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc-------
Q 004311 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS------- 296 (762)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~------- 296 (762)
+..++.++... +++++. ..+.+..++.++.+++.|++
T Consensus 170 ~~~v~~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 170 ITEVNKLIKAM-----------------------------APEEFR-------DKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred hHHHHhhhhcc-----------------------------CCHHHh-------hceEechhhCCHHHHhhhhcccccchh
Confidence 54433332110 011100 11223344555666666665
Q ss_pred --CCCCChhHHHHHHHHHHhcC--cceeeecccccCCCchHHHHHHHHhcCCCCcccccccccc------cCccceeecc
Q 004311 297 --DEPISSGDLEEAIRRATVAR--KFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILS 366 (762)
Q Consensus 297 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~------~~~~~~~~~~ 366 (762)
+..++.+++.+.++...... .|+|++ +.|||+|++++|+|.+++..+... +.+.......
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~----------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPLH----------QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhHH----------HHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 44455666666555444333 588984 799999999999998765433221 1122245567
Q ss_pred CCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-c
Q 004311 367 GNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D 444 (762)
Q Consensus 367 ~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~ 444 (762)
|++++|++++|||+.++++ |+++|+|||||+|++||+|++.+.++.++|++|+.++|.+.+++++|.|||||+|.|+ +
T Consensus 284 ~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 363 (720)
T TIGR00490 284 CDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363 (720)
T ss_pred CCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccc
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cccCceeecCCCc-cccccC-CCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHH
Q 004311 445 CASGDTFTDGSVK-YTMTSM-HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDI 522 (762)
Q Consensus 445 ~~~GdtL~~~~~~-~~l~~~-~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei 522 (762)
+.+||||++.... ..++++ .+|+|+++++|+|.+++|+++|.++|++|++|||+|++.+|++|||++|+||||||||+
T Consensus 364 ~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei 443 (720)
T TIGR00490 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEI 443 (720)
T ss_pred cccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHH
Confidence 8899999987644 345655 57899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceEEEeCceeeEEeeeccccc-eeeeecccCCCCCceEEEEEEEEeCCCCC-------------------
Q 004311 523 YVERIRREYKVDATVGKPRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------- 582 (762)
Q Consensus 523 ~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~i~P~~~~~------------------- 582 (762)
+++||+++||+++++++|+|+|||||.+.++ ..+++ .++|++++++++|++++.
T Consensus 444 ~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~ 517 (720)
T TIGR00490 444 IVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKER 517 (720)
T ss_pred HHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccchHHH
Confidence 9999999999999999999999999999877 44443 347899999999998751
Q ss_pred --------------------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEeccccc--CCC
Q 004311 583 --------------------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDS 640 (762)
Q Consensus 583 --------------------~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 640 (762)
+.+|.|.+.+.|+.+|++|++||++||+||+++||||||||+||+|+|+|+.+|+ +||
T Consensus 518 ~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds 597 (720)
T TIGR00490 518 RRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHR 597 (720)
T ss_pred HHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccC
Confidence 1589999999999999999999999999999999999999999999999999995 889
Q ss_pred cHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchH
Q 004311 641 SELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYS 720 (762)
Q Consensus 641 ~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~ 720 (762)
++++|+.|+++||+ +|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..++.+.|+|++|++|||||+
T Consensus 598 ~~~~f~~a~~~a~~-~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~ 676 (720)
T TIGR00490 598 GPAQVIPAVRSGIF-AAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFA 676 (720)
T ss_pred ccchHHHHHHHHHH-HHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCc
Confidence 99999999999999 99999999999999999999999999999999999999999988767789999999999999999
Q ss_pred HHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhhcccC
Q 004311 721 TALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 760 (762)
Q Consensus 721 ~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~~~~~ 760 (762)
++||++|+|+|+|+|+|+||+++|++.+++++.+.|++++
T Consensus 677 ~~Lrs~T~G~a~~~~~f~~y~~vp~~~~~~ii~~~r~rkg 716 (720)
T TIGR00490 677 GAIRGATSGRCLWSTEHAGFELVPQNLQQEFVMEVRKRKG 716 (720)
T ss_pred HHHHhhCCCCceEEEEecccccCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999988775
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=5.9e-113 Score=1010.73 Aligned_cols=642 Identities=31% Similarity=0.498 Sum_probs=549.6
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee----cCeeEE
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQIN 143 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~ 143 (762)
++++||||+|+||+|||||||+++|++.+|.+.+. +.++ ++++|+.++|++||+|++++...+.| +++.++
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGE---QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCc---ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 46789999999999999999999999999998763 3333 67899999999999999999988877 478999
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccc
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (762)
|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..+++....++++..++..
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~ 170 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKI 170 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887766666666655431
Q ss_pred eeeeeecCCCcCcccceeeccccee----EEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCC
Q 004311 224 CAAVQVPMGLEDQFQGLVDLVQLTA----YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEP 299 (762)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~----~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~ 299 (762)
. ..+.++++...... +.+.+.+|+....+.... ....+..+.+..++. +++++.|+++
T Consensus 171 ~----------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~-----~~~~~~~~~~~~~~~-~~l~e~~~~~-- 232 (731)
T PRK07560 171 I----------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYN-----WAISVPMMQKTGIKF-KDIIDYYEKG-- 232 (731)
T ss_pred H----------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccc-----cceeHHHHHHhCCCH-HHHHHHHhcC--
Confidence 1 12334444433322 234444454433322111 000112233333343 6688888543
Q ss_pred CChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccc------cCccceeeccCCCCCCe
Q 004311 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPL 373 (762)
Q Consensus 300 ~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~p~ 373 (762)
+.+++. .++|++ +.|||+|++++|+|.+++..+... .....+....|++++|+
T Consensus 233 -~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~ 291 (731)
T PRK07560 233 -KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPL 291 (731)
T ss_pred -CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCE
Confidence 233332 348885 789999999999998766543221 11122345678999999
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCcee
Q 004311 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTF 451 (762)
Q Consensus 374 ~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL 451 (762)
+++|||+.+|++ |+++|+|||||+|++||.|++.+.+.+++|.+|+.++|++..+++++.|||||+|.|+ ++.+||||
T Consensus 292 ~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL 371 (731)
T PRK07560 292 VMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETV 371 (731)
T ss_pred EEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEE
Confidence 999999999998 9999999999999999999999999899999999999999999999999999999999 78899999
Q ss_pred ecCCCccccccC-CCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhh
Q 004311 452 TDGSVKYTMTSM-HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRRE 530 (762)
Q Consensus 452 ~~~~~~~~l~~~-~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~ 530 (762)
++......++++ .+|+|+++++|+|.++.|.++|.++|++|++|||+|+|..|++|||++|+||||||||++++||+++
T Consensus 372 ~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~ 451 (731)
T PRK07560 372 VSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRD 451 (731)
T ss_pred eCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 988766777776 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeCceeeEEeeeccccc-eeeeecccCCCCCceEEEEEEEEeCCCCC---------------------------
Q 004311 531 YKVDATVGKPRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGS--------------------------- 582 (762)
Q Consensus 531 f~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~i~P~~~~~--------------------------- 582 (762)
|++++++++|+|+|||||.++++ ..+. + .++|++|+++++|++++.
T Consensus 452 ~~vev~~~~p~V~yrETI~~~~~~~~~~----~--~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (731)
T PRK07560 452 YGIEVVTSEPIVVYRETVRGKSQVVEGK----S--PNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIE 525 (731)
T ss_pred hCCceEecCCEEEEEEecccCccceEEE----C--CCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhh
Confidence 99999999999999999998874 3322 2 345899999999998642
Q ss_pred --------------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccc--cCCCcHHHHH
Q 004311 583 --------------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASH--AVDSSELAFK 646 (762)
Q Consensus 583 --------------~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~--~~~s~~~~~~ 646 (762)
.++|.|++.+.|+.+|++|+++|++||+|||++||||||||+||+|+|.|+++| ..++++++|+
T Consensus 526 ~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~ 605 (731)
T PRK07560 526 AGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVI 605 (731)
T ss_pred cCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHH
Confidence 137999999999999999999999999999999999999999999999999999 4578899999
Q ss_pred HHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhh
Q 004311 647 MAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSM 726 (762)
Q Consensus 647 ~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~ 726 (762)
.|+++||+ +|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.+++..++.+.|+|++|++|||||+++||++
T Consensus 606 ~a~~~a~~-~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~ 684 (731)
T PRK07560 606 PAVRNAIF-AAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSA 684 (731)
T ss_pred HHHHHHHH-HHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhh
Confidence 99999999 99999999999999999999999999999999999999999998777789999999999999999999999
Q ss_pred cCCeEEEEEEeCceecCChhHHHHHHHHhhcccC
Q 004311 727 TQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 760 (762)
Q Consensus 727 T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~~~~~ 760 (762)
|+|+|+|+|+|+||++||++.+++++.+.|++++
T Consensus 685 T~G~~~~~~~f~~y~~v~~~~~~~ii~~~r~rKG 718 (731)
T PRK07560 685 TEGRALWSTEFAGFEPVPDSLQLDIVRQIRERKG 718 (731)
T ss_pred CcCCceEEEEeccceeCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999988774
No 12
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-110 Score=858.60 Aligned_cols=672 Identities=33% Similarity=0.541 Sum_probs=599.3
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
...+||||+|++|+|+||||.++++||.+|.+...|.|++| .+++|++..|++||||++++...|.|+|+++|+|||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddg---dtvtdfla~erergitiqsaav~fdwkg~rinlidt 109 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDG---DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDT 109 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCC---chHHHHHHHHHhcCceeeeeeeecccccceEeeecC
Confidence 35689999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||+||.-++++.+|+.|+++.|+|++.|+++||..+|+++.++++|.++|+||||+..++++..+++++++|+..+..+
T Consensus 110 pghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l 189 (753)
T KOG0464|consen 110 PGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKL 189 (753)
T ss_pred CCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcc-cceeecccceeEEe--eCCCCCeEEecCC----ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC---
Q 004311 228 QVPMGLEDQF-QGLVDLVQLTAYYF--HGSNGEKIVTGEV----PADMETFVAEKRRELIELVSEVDDKLGDMFLSD--- 297 (762)
Q Consensus 228 ~~pi~~~~~~-~g~idl~~~~~~~~--~~~~g~~~~~~~i----~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--- 297 (762)
|+|+++...| .|++|++..+.+.| +..+|+.|...++ ..++.+...+++..|++++++.|+++.++||++
T Consensus 190 ~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~ 269 (753)
T KOG0464|consen 190 QLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDE 269 (753)
T ss_pred EecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhc
Confidence 9999999999 89999998888888 5667888887764 356788888999999999999999999999875
Q ss_pred --CCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEE
Q 004311 298 --EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVA 375 (762)
Q Consensus 298 --~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 375 (762)
+.++.++++.++++.+...+..|++||||.++.||++|||++.-|+|||.++.-- + ..-....+++
T Consensus 270 n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernye-f-----------lqwykddlca 337 (753)
T KOG0464|consen 270 NFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYE-F-----------LQWYKDDLCA 337 (753)
T ss_pred cccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchH-H-----------HhhhhhhHHH
Confidence 4678899999999999999999999999999999999999999999999875321 1 1224567899
Q ss_pred EEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeec
Q 004311 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTD 453 (762)
Q Consensus 376 ~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~ 453 (762)
+.||+.+|+. |.++|.|+|||+|+.+..|+|.+..-.+.+.+++...++++.+|+++.||+|....|+ .+.+|||+..
T Consensus 338 lafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtiva 417 (753)
T KOG0464|consen 338 LAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVA 417 (753)
T ss_pred HhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEe
Confidence 9999999986 9999999999999999999999999999999999999999999999999999999999 8999999975
Q ss_pred CC------------------------CccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCc
Q 004311 454 GS------------------------VKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQ 509 (762)
Q Consensus 454 ~~------------------------~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge 509 (762)
++ +...+.++++|.|||+|.|||.+-+..+.+..+|+.|.+||||++++.|++|||
T Consensus 418 skasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgq 497 (753)
T KOG0464|consen 418 SKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQ 497 (753)
T ss_pred cchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCc
Confidence 43 124577899999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhHHHHHHHHHHhhcCceEEEeCceeeEEeeeccccceeeeecccCCCCCc--eEEEEEEEEeCCCCC-CCCc
Q 004311 510 TIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQ--YGRVIGYIEPLPLGS-PAKF 586 (762)
Q Consensus 510 ~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~--~~~v~~~i~P~~~~~-~~~~ 586 (762)
+++.||||||+|++.+|++|+||+++-+++.+|+|||+|.+......+.....|...+ |.++..+.+|..... -..+
T Consensus 498 til~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kki 577 (753)
T KOG0464|consen 498 TILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKI 577 (753)
T ss_pred eEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeE
Confidence 9999999999999999999999999999999999999999876654444444444444 444444444432211 0112
Q ss_pred eeeeccc-CCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeE
Q 004311 587 EFENLLV-GQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVI 665 (762)
Q Consensus 587 ~~~~~~~-~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~L 665 (762)
+|+-.-. ...+.+--+.||++|+..||.+|||.|+|+.+|+++|.....|....++..+..++.+|+. +|+.+|.-+|
T Consensus 578 efe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvq-ealkkad~~l 656 (753)
T KOG0464|consen 578 EFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQ-EALKKADKQL 656 (753)
T ss_pred EeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHH-HHHhhhhHHH
Confidence 3332111 1112222378999999999999999999999999999999999988888888899999999 9999999999
Q ss_pred eeeeEEEEEEecc-cchHHHHHHHhcCCceeeccccCCC--eEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceec
Q 004311 666 LEPVMLVELKVPT-EFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAP 742 (762)
Q Consensus 666 lEPi~~~eI~~p~-~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~ 742 (762)
+||+|+++|.+.. +++..|+.+|.+|||++.+.+..++ ...|-|.+|++|+.||+..||.+|+|.|.|.++|.+|+.
T Consensus 657 ~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqa 736 (753)
T KOG0464|consen 657 LEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQA 736 (753)
T ss_pred hhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhh
Confidence 9999999998855 8999999999999999999987644 456999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHh
Q 004311 743 VSQDVQLQLVKTH 755 (762)
Q Consensus 743 v~~~~~~~i~~~~ 755 (762)
|.++.+.+|+++.
T Consensus 737 mn~~dk~~il~kr 749 (753)
T KOG0464|consen 737 MNEHDKMEILKKR 749 (753)
T ss_pred cChHHHHHHHHhh
Confidence 9999999998754
No 13
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-103 Score=823.19 Aligned_cols=669 Identities=27% Similarity=0.412 Sum_probs=547.5
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee----------
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------- 137 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---------- 137 (762)
+..+|||+.+|+|+|||||||+++|..++|.|+.. -.++ ++++|+.++|++|||||++..+++-+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe---~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGE---TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCC---ccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 45789999999999999999999999999988642 1233 78999999999999999999988743
Q ss_pred ------cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC----
Q 004311 138 ------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA---- 207 (762)
Q Consensus 138 ------~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~---- 207 (762)
++..+||||.|||+||.+++..|||..|+|++|||+.+|+..||+++++++....+..++|+||+|+.-.
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~ 169 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQL 169 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcC
Confidence 3588999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred ChhHHHHHHHHHhcc-ce----------eeeee-c----CCCcCcccce----------------eecccc-----eeEE
Q 004311 208 DPWKVLDQARSKLRH-HC----------AAVQV-P----MGLEDQFQGL----------------VDLVQL-----TAYY 250 (762)
Q Consensus 208 ~~~~~~~~i~~~l~~-~~----------~~~~~-p----i~~~~~~~g~----------------idl~~~-----~~~~ 250 (762)
..++..+.+++.... +. ..+++ | ++.++.+.|| +|..++ ...+
T Consensus 170 ~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~ 249 (842)
T KOG0469|consen 170 SQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNF 249 (842)
T ss_pred CHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccc
Confidence 223333333332211 10 11121 2 2335666676 444333 3334
Q ss_pred eeCCCCCeEEe-------cCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCcce
Q 004311 251 FHGSNGEKIVT-------GEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI----SSGDLEEAIRRATVARKFI 319 (762)
Q Consensus 251 ~~~~~g~~~~~-------~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~----~~~~l~~~l~~~~~~~~~~ 319 (762)
|++... .|.. .+.++.|..+++.+..++.+++.+...+-...||+..++ ...++...---...+++|+
T Consensus 250 f~~ktk-k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wL 328 (842)
T KOG0469|consen 250 FNPKTK-KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWL 328 (842)
T ss_pred cCccCC-cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhc
Confidence 443332 2221 245678999999999999999998877665556553221 1112211111224567899
Q ss_pred eeecccccCCCchHHHHHHHHhcCCCCcccccccccc------cCccceeeccCCCCCCeEEEEEEEeecCC-cc-EEEE
Q 004311 320 PVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYL 391 (762)
Q Consensus 320 Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~-l~~~ 391 (762)
|-- +.||++|.-+||||..+|+++.+. +++.+..+..||+++|+++||+||..... |+ ++||
T Consensus 329 PAa----------dallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFG 398 (842)
T KOG0469|consen 329 PAA----------DALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFG 398 (842)
T ss_pred chH----------HHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEe
Confidence 974 789999999999999999998653 33444567889999999999999988754 54 8999
Q ss_pred EEEeeeecCCCeEEecCC----CeEE-----EcCeEEEeecCcccccccccCCCEEEEcccc---cccCceeecCCCccc
Q 004311 392 RIYEGVIRKGDFIINVNT----GKKI-----KVPRLVRMHSNEMEDIQEAHAGQIVAVFGVD---CASGDTFTDGSVKYT 459 (762)
Q Consensus 392 RV~sG~l~~g~~v~~~~~----~~~~-----ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~---~~~GdtL~~~~~~~~ 459 (762)
|||||++..|+++++... |+++ .|.+...|||+..++|+.++||+|+++.|+| .++| ||+..+....
T Consensus 399 RVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtG-TiTt~e~AHN 477 (842)
T KOG0469|consen 399 RVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTG-TITTSEAAHN 477 (842)
T ss_pred eeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccC-ceeehhhhcc
Confidence 999999999999997654 4443 3667788999999999999999999999993 3556 9988877777
Q ss_pred cccCCCC-cceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-CceEEE
Q 004311 460 MTSMHVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATV 537 (762)
Q Consensus 460 l~~~~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~ 537 (762)
+..++|. .||+++++|++++.|++||.++|++|++.||.+.+.+ +|+||++|.|.||||||||+++|++.| ++.++.
T Consensus 478 mrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~ 556 (842)
T KOG0469|consen 478 MRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKK 556 (842)
T ss_pred ceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceec
Confidence 8888776 8999999999999999999999999999999999988 589999999999999999999999999 899999
Q ss_pred eCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCC-----------------------------------
Q 004311 538 GKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS----------------------------------- 582 (762)
Q Consensus 538 ~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~----------------------------------- 582 (762)
++|.|+||||+.+.+...+..| .+++++++++.++|++++-
T Consensus 557 sdPvVsYrEtvs~~ss~~~lsK----SpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRK 632 (842)
T KOG0469|consen 557 SDPVVSYRETVSEESSQTCLSK----SPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARK 632 (842)
T ss_pred CCCeeeeecccccccchhhhcc----CCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhhe
Confidence 9999999999999887666544 4677889999999987540
Q ss_pred --------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccccCC--CcHHHHHHHHHHH
Q 004311 583 --------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVD--SSELAFKMAAIYA 652 (762)
Q Consensus 583 --------~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~--s~~~~~~~a~~~a 652 (762)
.+.|.+.+.+.+-++.++++++|..||+||.++|||+||.+++|+|.|.|..+|... ...+.+...+|++
T Consensus 633 IWCfgPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~ 712 (842)
T KOG0469|consen 633 IWCFGPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRV 712 (842)
T ss_pred eeEeCCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHH
Confidence 134667777777788899999999999999999999999999999999999988743 2234577899999
Q ss_pred HHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccC--CCeEEEEEEechhhhhchHHHHhhhcCCe
Q 004311 653 FRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE--GDDSVITAHVPLNNMFGYSTALRSMTQGK 730 (762)
Q Consensus 653 ~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~--~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~ 730 (762)
|+ .+++.|+|+|+||+|.|||+||++++|.||+.|++|||++.+++.. ..++.|+|++|+.|+|||..+|||-|.|+
T Consensus 713 ~y-a~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~Gq 791 (842)
T KOG0469|consen 713 LY-ASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQ 791 (842)
T ss_pred HH-HHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCc
Confidence 99 9999999999999999999999999999999999999999999875 45899999999999999999999999999
Q ss_pred EEEEEEeCceecCChhHH------HHHHHHhhccc
Q 004311 731 GEFTMEYKEHAPVSQDVQ------LQLVKTHNAGR 759 (762)
Q Consensus 731 a~~~~~f~~y~~v~~~~~------~~i~~~~~~~~ 759 (762)
|..+|.|+||+++|+|+. .+++.+-|+.+
T Consensus 792 Afpq~vFdHws~lpgdp~dp~sk~~~iV~~~RKrk 826 (842)
T KOG0469|consen 792 AFPQMVFDHWSILPGDPLDPTSKPGQIVLATRKRK 826 (842)
T ss_pred cccceeeeccccCCCCCCCCCccchHHHHHHHHhc
Confidence 999999999999999874 35555555444
No 14
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-87 Score=716.41 Aligned_cols=668 Identities=23% Similarity=0.322 Sum_probs=524.6
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-----cCee
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQ 141 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~ 141 (762)
..+.++|||+++||-+||||+|.+.|...+..--.. ..+. -..++|.+..|++||++|++...++-. +.+.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~-~~e~---~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l 198 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK-NTEA---DLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYL 198 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccc-cccc---cccccccchhhHhcCceEeecceEEEEecCcCceee
Confidence 356789999999999999999999998776521110 0111 146899999999999999999888744 4589
Q ss_pred EEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-------C----hh
Q 004311 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-------D----PW 210 (762)
Q Consensus 142 i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~-------~----~~ 210 (762)
+|++|||||++|..++..+++.+|++++|||+.+|++.+|+++++++.+.++|+++|+||+|+.-. + ..
T Consensus 199 ~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLr 278 (971)
T KOG0468|consen 199 MNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLR 278 (971)
T ss_pred eeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998521 1 11
Q ss_pred HHHHHHHHHhcc---ceeeeeecCCCcCccc---------------------ceeeccc-----ceeEEeeCCCCCeEE-
Q 004311 211 KVLDQARSKLRH---HCAAVQVPMGLEDQFQ---------------------GLVDLVQ-----LTAYYFHGSNGEKIV- 260 (762)
Q Consensus 211 ~~~~~i~~~l~~---~~~~~~~pi~~~~~~~---------------------g~idl~~-----~~~~~~~~~~g~~~~- 260 (762)
.++++++..++. .-.++--|+..+-.|. |-+|... |...||+..+.+-..
T Consensus 279 Hii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk 358 (971)
T KOG0468|consen 279 HIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKK 358 (971)
T ss_pred HHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccC
Confidence 344555543332 2233334443221111 1133222 666788765432222
Q ss_pred --ecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC--CCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHH
Q 004311 261 --TGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLL 336 (762)
Q Consensus 261 --~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Ll 336 (762)
....+..|.+|++++.+++..++....++-+...+.+ ..+++++++-..|-.+. ..+..||+.. .-+.
T Consensus 359 ~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~~------sgfv 430 (971)
T KOG0468|consen 359 PPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGIE------SGFV 430 (971)
T ss_pred CCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccch------hhhh
Confidence 2234678999999999999988766555555555543 34666666533321110 0122233332 3489
Q ss_pred HHHHhcCCCCccccccccccc------CccceeeccCCCCCCeEEEEEEEeecCC--ccEEEEEEEeeeecCCCeEEecC
Q 004311 337 DGVLSYLPCPTEVSNYALDQK------NNEEKVILSGNPDGPLVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVN 408 (762)
Q Consensus 337 d~i~~~lPsP~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~V~k~~~d~~--G~l~~~RV~sG~l~~g~~v~~~~ 408 (762)
|++++++|+|.+......++. ...-..+..|++++|+++.+.|++.... -..+|+||+||+++.|+.|.+..
T Consensus 431 d~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlg 510 (971)
T KOG0468|consen 431 DMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLG 510 (971)
T ss_pred HhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEee
Confidence 999999999998665544432 1122345679999999999999998654 56899999999999999999876
Q ss_pred CC---------eEEEcCeEEEeecCcccccccccCCCEEEEcccc--cccCceeecCC---CccccccCC-CCcceeeee
Q 004311 409 TG---------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVD--CASGDTFTDGS---VKYTMTSMH-VPEPVMSLA 473 (762)
Q Consensus 409 ~~---------~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~GdtL~~~~---~~~~l~~~~-~~~Pv~~~~ 473 (762)
.+ ....|.+++.+.+++..+|+.|+||.++.|.|++ .....|+++.+ ..+.++++. .+.|+++++
T Consensus 511 eny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKia 590 (971)
T KOG0468|consen 511 ENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVA 590 (971)
T ss_pred ccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEE
Confidence 54 2346889999999999999999999999999993 33344777653 346777765 459999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-CceEEEeCceeeEEeeecccc
Q 004311 474 VQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGKPRVNFREAVTKRA 552 (762)
Q Consensus 474 iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~~~p~V~yrEti~~~~ 552 (762)
++|.+|++++||.++|+|.++.+|.+...+ +|+||++|.|.|||.|++++.+||+-| .|++++++|.|.|.||+.+++
T Consensus 591 veP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vets 669 (971)
T KOG0468|consen 591 VEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETS 669 (971)
T ss_pred eccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeeccc
Confidence 999999999999999999999999998887 799999999999999999999999999 799999999999999999977
Q ss_pred ceeeeecccCCCCCceEEEEEEEEeCCCC-------------------------------------------CCCCceee
Q 004311 553 EFDYLHKKQSGGQGQYGRVIGYIEPLPLG-------------------------------------------SPAKFEFE 589 (762)
Q Consensus 553 ~~~~~~~~~~g~~~~~~~v~~~i~P~~~~-------------------------------------------~~~~~~~~ 589 (762)
...+.... ++.-+.|++..||++.+ ..++|++.
T Consensus 670 sikcfaet----pnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~ 745 (971)
T KOG0468|consen 670 SIKCFAET----PNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILL 745 (971)
T ss_pred chhhhccC----CCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceee
Confidence 76554443 33345678888887643 12346777
Q ss_pred ecccCCCCCcc----hHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccccC--CCcHHHHHHHHHHHHHHHHHHhCCC
Q 004311 590 NLLVGQAIPSN----FIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAV--DSSELAFKMAAIYAFRQQCYAAAKP 663 (762)
Q Consensus 590 ~~~~~~~~~~~----~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~~~a~~~~a~~~a~p 663 (762)
+++...++.++ ++++|.+||+|++++||||+||+++|+|+|.|+...+. +...+.+..++|++++ .|++.|.|
T Consensus 746 dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~Y-safL~AtP 824 (971)
T KOG0468|consen 746 DDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAY-SAFLMATP 824 (971)
T ss_pred cCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHH-HHHHhhch
Confidence 76666555555 46789999999999999999999999999999876443 3333467889999999 99999999
Q ss_pred eEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCC--CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCcee
Q 004311 664 VILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHA 741 (762)
Q Consensus 664 ~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~ 741 (762)
+||||+|.|||++|.+++..|+.+|++|||+|....+.. ....|+|++|+.|+|||.++||..|+|+|.+++.|+||+
T Consensus 825 rLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~ 904 (971)
T KOG0468|consen 825 RLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWR 904 (971)
T ss_pred hhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcc
Confidence 999999999999999999999999999999999887653 478899999999999999999999999999999999999
Q ss_pred cCChhHHHHHH
Q 004311 742 PVSQDVQLQLV 752 (762)
Q Consensus 742 ~v~~~~~~~i~ 752 (762)
+||+|+.++=+
T Consensus 905 ~VPGDpLDKsi 915 (971)
T KOG0468|consen 905 IVPGDPLDKSI 915 (971)
T ss_pred cCCCCcccccc
Confidence 99999987643
No 15
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.3e-84 Score=742.72 Aligned_cols=452 Identities=31% Similarity=0.512 Sum_probs=411.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
||||+|+||+|||||||+++|++.+|.+.+.+.+.+ +++|+.++|++||+|+.+....+.|++++++|||||||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 699999999999999999999999998877655543 599999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPM 231 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 231 (762)
||..++.++++.+|++|||||+.+|++.||+.+|..+...++|+|+|+||+|+.++++.++++++.+.+....
T Consensus 76 DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g------- 148 (594)
T TIGR01394 76 DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG------- 148 (594)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc-------
Confidence 9999999999999999999999999999999999999999999999999999988777777777666542100
Q ss_pred CCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHH
Q 004311 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (762)
Q Consensus 232 ~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (762)
. +.+
T Consensus 149 ------------------------------------------------------~--------------~~e-------- 152 (594)
T TIGR01394 149 ------------------------------------------------------A--------------DDE-------- 152 (594)
T ss_pred ------------------------------------------------------c--------------ccc--------
Confidence 0 000
Q ss_pred HHhcCcceeeecccccCCC----------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEe
Q 004311 312 ATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (762)
Q Consensus 312 ~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (762)
..-+|++++||++|. |+++||+.|++++|+|. .+.++||+++||+++
T Consensus 153 ----~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~-------------------~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 153 ----QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK-------------------GDLDEPLQMLVTNLD 209 (594)
T ss_pred ----cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC-------------------CCCCCCEEEEEEEEE
Confidence 012689999999996 89999999999999996 356899999999999
Q ss_pred ecCC-ccEEEEEEEeeeecCCCeEEecCCC---eEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCC
Q 004311 382 EGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSV 456 (762)
Q Consensus 382 ~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~ 456 (762)
++++ |++++|||+||+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.|||||++.|+ ++.+|||||+..+
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEV 289 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCc
Confidence 9998 9999999999999999999998763 257999999999999999999999999999999 8999999999988
Q ss_pred ccccccCCCCcceeeeeeecCCC---CCHHH------HHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHH
Q 004311 457 KYTMTSMHVPEPVMSLAVQPVSK---DSGGQ------FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERI 527 (762)
Q Consensus 457 ~~~l~~~~~~~Pv~~~~iep~~~---~d~~k------l~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL 527 (762)
+..++++.+++|+++++++|.+. .++.| |.++|.|+.++||+|++..++++++++|+|+|||||+|++++|
T Consensus 290 ~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~l 369 (594)
T TIGR01394 290 PEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETM 369 (594)
T ss_pred cccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHH
Confidence 88899999999999999999855 44444 9999999999999999999999999999999999999999999
Q ss_pred HhhcCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHH
Q 004311 528 RREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEK 607 (762)
Q Consensus 528 ~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 607 (762)
+|+ |+++.+++|+|+||| +.
T Consensus 370 rre-g~e~~~~~P~V~yre-i~---------------------------------------------------------- 389 (594)
T TIGR01394 370 RRE-GFELQVGRPQVIYKE-ID---------------------------------------------------------- 389 (594)
T ss_pred hcc-CceEEEeCCEEEEEe-CC----------------------------------------------------------
Confidence 999 999999999999999 41
Q ss_pred HHHHHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHH
Q 004311 608 GFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGD 687 (762)
Q Consensus 608 g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~ 687 (762)
| .|||||++++|.||++|+|+||++
T Consensus 390 --------g-----------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~ 414 (594)
T TIGR01394 390 --------G-----------------------------------------------KKLEPIEELTIDVPEEHVGAVIEK 414 (594)
T ss_pred --------C-----------------------------------------------eEECCEEEEEEEechHHHHHHHHH
Confidence 0 378999999999999999999999
Q ss_pred HhcCCceeeccccC-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHH
Q 004311 688 INKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQL 749 (762)
Q Consensus 688 l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~ 749 (762)
|++|||+|++++.. +++..|+|.+|+++|+||.++|||+|+|+|+|+++|+||+++|++++.
T Consensus 415 l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 415 LGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred HHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 99999999999985 568999999999999999999999999999999999999999987654
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1e-82 Score=727.37 Aligned_cols=452 Identities=32% Similarity=0.501 Sum_probs=410.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++||||+|+||+|||||||+++|++.+|.+.+...+. .+++|+.++|+++|+|+.+....+.|+++.++||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~-----~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG 77 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ-----ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG 77 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc-----eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCC
Confidence 5799999999999999999999999988876543222 47999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeee
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (762)
|.+|..++.++++.+|++|+|+|+.+|+..||+.+|..+...++|.++|+||+|+.++++.+.++++.+.+..-
T Consensus 78 ~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l------ 151 (607)
T PRK10218 78 HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL------ 151 (607)
T ss_pred cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999998888888887765310
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
+ ...
T Consensus 152 ------------~---------------------------------------------------------~~~------- 155 (607)
T PRK10218 152 ------------D---------------------------------------------------------ATD------- 155 (607)
T ss_pred ------------C---------------------------------------------------------ccc-------
Confidence 0 000
Q ss_pred HHHHhcCcceeeecccccCCC----------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEE
Q 004311 310 RRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (762)
...-+|++++||++|. |+..||+.|++++|+|. +++++||.++|||
T Consensus 156 -----~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~-------------------~~~~~Pl~~~V~k 211 (607)
T PRK10218 156 -----EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD-------------------VDLDGPFQMQISQ 211 (607)
T ss_pred -----cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEe
Confidence 0012799999999998 69999999999999996 4678999999999
Q ss_pred EeecCC-ccEEEEEEEeeeecCCCeEEecCC-Ce--EEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecC
Q 004311 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT-GK--KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDG 454 (762)
Q Consensus 380 ~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~-~~--~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~ 454 (762)
+++|++ |++++|||++|+|+.||.|++.+. ++ +++|++||.+.|.++.++++|.|||||++.|+ ++.+|||||+.
T Consensus 212 ~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~ 291 (607)
T PRK10218 212 LDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDT 291 (607)
T ss_pred eEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecC
Confidence 999998 999999999999999999999876 44 68899999999999999999999999999999 89999999998
Q ss_pred CCccccccCCCCcceeeeeeecCC---CCCHHHHHH---HHHHHHH---cCCceEEEEcCCCCcEEEEecchhHHHHHHH
Q 004311 455 SVKYTMTSMHVPEPVMSLAVQPVS---KDSGGQFSK---ALNRFQK---EDPTFRVGLDAESGQTIISGMGELHLDIYVE 525 (762)
Q Consensus 455 ~~~~~l~~~~~~~Pv~~~~iep~~---~~d~~kl~~---~L~~L~~---eDPsl~v~~~~etge~il~g~GelHLei~~~ 525 (762)
.++..++.+.+|+|++++++.|++ ..|+.|+.. +|++|.+ +||+|++..++++++++|+|+|||||+|+++
T Consensus 292 ~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e 371 (607)
T PRK10218 292 QNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIE 371 (607)
T ss_pred CCcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHH
Confidence 888888999999999999999999 778888754 5666666 9999999999999999999999999999999
Q ss_pred HHHhhcCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHH
Q 004311 526 RIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAI 605 (762)
Q Consensus 526 rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i 605 (762)
||+++ |+|+.+++|+|+|||| + +
T Consensus 372 ~lrre-g~e~~~~~P~V~yret--~-----g------------------------------------------------- 394 (607)
T PRK10218 372 NMRRE-GFELAVSRPKVIFREI--D-----G------------------------------------------------- 394 (607)
T ss_pred HHHhC-CceEEEeCCEEEEEEE--C-----C-------------------------------------------------
Confidence 99999 9999999999999998 0 0
Q ss_pred HHHHHHHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHH
Q 004311 606 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVA 685 (762)
Q Consensus 606 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~ 685 (762)
+.||||++++|.||++|+|+||
T Consensus 395 ----------------------------------------------------------~klEPi~~v~i~vP~e~~G~V~ 416 (607)
T PRK10218 395 ----------------------------------------------------------RKQEPYENVTLDVEEQHQGSVM 416 (607)
T ss_pred ----------------------------------------------------------EEeCCeEEEEEEechhhHHHHH
Confidence 1259999999999999999999
Q ss_pred HHHhcCCceeeccccC-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC-hhH
Q 004311 686 GDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS-QDV 747 (762)
Q Consensus 686 ~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~-~~~ 747 (762)
++|++|||++++++.. +++..|+|.+|+++++||.++|+|+|+|+|+|++.|+||+++| +++
T Consensus 417 ~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 417 QALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred HHHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 9999999999999985 5789999999999999999999999999999999999999998 554
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.8e-82 Score=730.01 Aligned_cols=459 Identities=31% Similarity=0.513 Sum_probs=405.4
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----CeeEE
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQIN 143 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~ 143 (762)
.++||||+|+||+|||||||+++|++.+|.+.+.+ .+ .+++|++++|++||+|+.+....+.|+ ++.++
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~---~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ln 77 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MK---AQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILN 77 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cc---cccccCchHHhhcCCcccccEEEEEEEccCCCcEEEE
Confidence 46899999999999999999999999999886531 13 679999999999999999999999886 68999
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccc
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (762)
|||||||.+|..++.++++.+|++|+|+|+++|++.||...|..+...++|+++|+||+|+..++.....+++.+.++..
T Consensus 78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 78 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID 157 (600)
T ss_pred EEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988999999999999997665544444443333210
Q ss_pred eeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004311 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (762)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (762)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeec
Q 004311 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (762)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d 383 (762)
..+++++||++|.|+++|+++|.+.+|+|. .+.++||.++||++++|
T Consensus 158 --------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~-------------------~~~~~pl~~~Vfd~~~d 204 (600)
T PRK05433 158 --------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPK-------------------GDPDAPLKALIFDSWYD 204 (600)
T ss_pred --------------cceEEEEecCCCCCHHHHHHHHHHhCcccc-------------------CCCCCCceEEEEEEEec
Confidence 113678899999999999999999999996 35789999999999999
Q ss_pred CC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc-c---c-ccccCceeecCCCc
Q 004311 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCASGDTFTDGSVK 457 (762)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~~GdtL~~~~~~ 457 (762)
++ |+++++||++|+|++||+|++.+.++.++|.+|+.+.+ +..+++++.||||+.+. | + ++++||||++..++
T Consensus 205 ~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~ 283 (600)
T PRK05433 205 NYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNP 283 (600)
T ss_pred CCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCc
Confidence 98 99999999999999999999999999999999996655 88899999999998874 4 3 68899999988766
Q ss_pred --cccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhh
Q 004311 458 --YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRRE 530 (762)
Q Consensus 458 --~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~ 530 (762)
..++++..|+|+++++++|.+.+|+++|.++|++|++|||+|++. +||++.++.| ||+|||||+++||+++
T Consensus 284 ~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e 361 (600)
T PRK05433 284 AEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLERE 361 (600)
T ss_pred cccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999999999999999999986 6899999999 9999999999999999
Q ss_pred cCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHH
Q 004311 531 YKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFK 610 (762)
Q Consensus 531 f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~ 610 (762)
||+++.+++|+|+||||+.+. . .+.|.|
T Consensus 362 ~~~~v~~~~P~V~Yreti~~g-------------~-------------------~~~~~~-------------------- 389 (600)
T PRK05433 362 FDLDLITTAPSVVYEVTLTDG-------------E-------------------VIEVDN-------------------- 389 (600)
T ss_pred hCceEEEecCEEEEEEEEeCC-------------c-------------------EEEEEC--------------------
Confidence 999999999999999998751 0 111111
Q ss_pred HHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhc
Q 004311 611 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINK 690 (762)
Q Consensus 611 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~ 690 (762)
| .|+| ||++++ .||||||+++|.+|++|+|+||++|++
T Consensus 390 ------p-~~~p----------------ds~~~~-------------------~llEP~~~~~i~~P~~~~G~vm~~~~~ 427 (600)
T PRK05433 390 ------P-SKLP----------------DPGKIE-------------------EIEEPIVKATIIVPQEYVGAVMELCQE 427 (600)
T ss_pred ------c-ccCC----------------Cccccc-------------------eEECCEEEEEEEecHHHHHHHHHHHHH
Confidence 1 1333 343321 799999999999999999999999999
Q ss_pred CCceeeccccCCCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004311 691 RKGMIVGNDQEGDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 691 rrg~i~~~~~~~~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
|||++++++..++...|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 428 rRG~~~~~~~~~~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 428 KRGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred cCCEEeCcEecCCeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 99999999987778999999999999 999999999999999999999999986
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.8e-81 Score=719.53 Aligned_cols=458 Identities=30% Similarity=0.502 Sum_probs=402.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--C---eeEEE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--D---YQINI 144 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~---~~i~l 144 (762)
++||||+|+||+|||||||+++|++.+|.+++. ..+ .+++|+.++|+++|+|+.+....+.|+ + +.++|
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~---~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~l 74 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMR---EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNL 74 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---ccc---ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEE
Confidence 369999999999999999999999999988653 123 678999999999999999999888884 3 78999
Q ss_pred EeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccce
Q 004311 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 145 iDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (762)
||||||.+|..++.++++.||++|+|+|+++|++.||...|..+...++|+++|+||+|+..++.....+++.+.++.
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~-- 152 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL-- 152 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999888899999999999999765544444444333221
Q ss_pred eeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004311 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (762)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (762)
T Consensus 153 -------------------------------------------------------------------------------- 152 (595)
T TIGR01393 153 -------------------------------------------------------------------------------- 152 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecC
Q 004311 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (762)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 384 (762)
...+++++||++|.||++|+++|.+++|+|. .++++||.++||++++|+
T Consensus 153 ------------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~-------------------~~~~~pl~~~V~~~~~d~ 201 (595)
T TIGR01393 153 ------------DASEAILASAKTGIGIEEILEAIVKRVPPPK-------------------GDPDAPLKALIFDSHYDN 201 (595)
T ss_pred ------------CcceEEEeeccCCCCHHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEEEEEeC
Confidence 0123678899999999999999999999996 357899999999999999
Q ss_pred C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc-c---c-ccccCceeecCCCc-
Q 004311 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCASGDTFTDGSVK- 457 (762)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~~GdtL~~~~~~- 457 (762)
+ |+++++||++|+|++||+|++.+.++.++|.+|+.+.+.. .+++++.||||+.+. | + ++++||||++.+++
T Consensus 202 ~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~ 280 (595)
T TIGR01393 202 YRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPA 280 (595)
T ss_pred CCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcc
Confidence 8 9999999999999999999999999999999999776665 899999999998864 4 4 68899999988766
Q ss_pred -cccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhhc
Q 004311 458 -YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREY 531 (762)
Q Consensus 458 -~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~f 531 (762)
.+++++.+|+|+++++++|.+.+|+++|.++|++|.+|||+|++. +||+|.++.| ||+|||||+++||+++|
T Consensus 281 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~re~ 358 (595)
T TIGR01393 281 KEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREF 358 (595)
T ss_pred ccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHHHh
Confidence 378889999999999999999999999999999999999999986 5899988885 99999999999999999
Q ss_pred CceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHH
Q 004311 532 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 611 (762)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~ 611 (762)
|+++.+++|+|+||||+.+ | + .+. |.|
T Consensus 359 ~~~v~~~~P~V~Yreti~~-------------g--~----~~~-------------~~~--------------------- 385 (595)
T TIGR01393 359 NLDLITTAPSVIYRVYLTN-------------G--E----VIE-------------VDN--------------------- 385 (595)
T ss_pred CCeeEEecCEEEEEEEecC-------------C--c----EEE-------------EEC---------------------
Confidence 9999999999999999863 1 1 111 111
Q ss_pred HHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcC
Q 004311 612 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 691 (762)
Q Consensus 612 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~r 691 (762)
| .|||+.|. -|.||||||+++|.+|++|+|+||++|++|
T Consensus 386 -----p-~~~p~~~~-----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~r 424 (595)
T TIGR01393 386 -----P-SDLPDPGK-----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEK 424 (595)
T ss_pred -----c-ccCCCccc-----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHc
Confidence 2 37777651 158999999999999999999999999999
Q ss_pred CceeeccccC-CCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004311 692 KGMIVGNDQE-GDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 692 rg~i~~~~~~-~~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
||++++++.. +++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 425 RG~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 425 RGVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred CCEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 9999999985 458999999999997 999999999999999999999999973
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.6e-79 Score=691.65 Aligned_cols=450 Identities=29% Similarity=0.509 Sum_probs=409.2
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC-ccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
.+++|||+|+||+|||||||+++|++.+|.+.+.+.++++. ....++|+++.|++||+|+.+....+.|+++.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 46899999999999999999999999999999988887542 12456899999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||.+|..++.++++.+|++|+|+|+.+|+..+++.+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
++|++.+..|.|++|++.++++.|....|.. ..+.+.+++.||++|++|+++..+ +++.+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~~ 226 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLRE 226 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHHH
Confidence 9999999999999999999999996433321 134567889999999999998754 66666
Q ss_pred HH-----------HHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEE
Q 004311 308 AI-----------RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (762)
Q Consensus 308 ~l-----------~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (762)
.+ ++++..+.++|||||||++|.||+.|||+|++++|+|.++... .....+ .+.||+++
T Consensus 227 ~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~-~~~~~~~~ 296 (526)
T PRK00741 227 ELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------EREVEP-TEEKFSGF 296 (526)
T ss_pred HHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------ceeecC-CCCceEEE
Confidence 66 8899999999999999999999999999999999999754321 011112 45679999
Q ss_pred EEEEee--c-CC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCcee
Q 004311 377 AFKLEE--G-RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTF 451 (762)
Q Consensus 377 V~k~~~--d-~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL 451 (762)
|||+.+ + ++ |+++|+|||||++++||+|+|.++++++++++++.++|.+++++++|.||||+++.|+ ++++||||
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL 376 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTF 376 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCc
Confidence 999995 3 46 9999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ecCCCccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc
Q 004311 452 TDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY 531 (762)
Q Consensus 452 ~~~~~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f 531 (762)
+..+ +..++++.+|+|+++++|+|+++.|++||.+||++|.+||| +++..|++|+|++|+|||+|||||+++||+++|
T Consensus 377 ~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey 454 (526)
T PRK00741 377 TQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEY 454 (526)
T ss_pred cCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 9866 66788899999999999999999999999999999999995 999999999999999999999999999999999
Q ss_pred CceEEEeCceeeEEeeecc
Q 004311 532 KVDATVGKPRVNFREAVTK 550 (762)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~ 550 (762)
|+++.+++|+|++-.-+..
T Consensus 455 ~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 455 NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred CCEEEEecCCccEEEEEeC
Confidence 9999999999999887753
No 20
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-80 Score=677.95 Aligned_cols=643 Identities=24% Similarity=0.378 Sum_probs=484.4
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
...+.|||||+++|+|||||||.++|+...|.|+.. ..+. -+++|+.++|+.||||++++.++...+++.+||||
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~r--lagk---irfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSR--LAGK---IRFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechh--hccc---eeeccccchhhhhceeeeccccccccCceEEEEec
Confidence 346789999999999999999999999999988763 3444 67999999999999999999999989999999999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC----CChh-------HHHHH
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG----ADPW-------KVLDQ 215 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~----~~~~-------~~~~~ 215 (762)
+|||+||.+++..|.+.+|+++++||+.+|+..||..+++++...+..+++|+||||+.- ..+. +.+++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999642 3333 44555
Q ss_pred HHHHhccceeeeeecCCCcCcccceeec------ccceeEEeeCCCCCeEEecCCC------------------------
Q 004311 216 ARSKLRHHCAAVQVPMGLEDQFQGLVDL------VQLTAYYFHGSNGEKIVTGEVP------------------------ 265 (762)
Q Consensus 216 i~~~l~~~~~~~~~pi~~~~~~~g~idl------~~~~~~~~~~~~g~~~~~~~i~------------------------ 265 (762)
++..+|.... |++.+ +.....+|++.+|+.++.+.+.
T Consensus 159 vn~~i~~~~~-------------~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al 225 (887)
T KOG0467|consen 159 VNGVIGQFLG-------------GIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAAL 225 (887)
T ss_pred hhhHHHHhhc-------------chhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhh
Confidence 5555442111 11110 0122344555555554433321
Q ss_pred ---------------------------hhhHHHHHHHHHHHHH-HHhcCCHHHHHHHhcC--CCCChhHHHHHHHHHHhc
Q 004311 266 ---------------------------ADMETFVAEKRRELIE-LVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVA 315 (762)
Q Consensus 266 ---------------------------~~~~~~~~~~~~~l~e-~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~ 315 (762)
+-|.+++.+..=.+.+ .+...|.+-+++.... ..+-..+++..+. .++
T Consensus 226 ~k~lwgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im 303 (887)
T KOG0467|consen 226 LKFLWGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIM 303 (887)
T ss_pred hhhhccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHH
Confidence 1122223332222222 2222333444444432 2333444443332 346
Q ss_pred CcceeeecccccCCCchHHHHHHHHhcCCCCccccccccc---cc------CccceeeccCCCCCCeEEEEEEEeecC--
Q 004311 316 RKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD---QK------NNEEKVILSGNPDGPLVALAFKLEEGR-- 384 (762)
Q Consensus 316 ~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~---~~------~~~~~~~~~~~~~~p~~~~V~k~~~d~-- 384 (762)
.+|+|+- +..+-+++.++|+|.+.+..+.. .. .........|+.++|..+||.|+...+
T Consensus 304 ~~wLPls----------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k 373 (887)
T KOG0467|consen 304 STWLPLS----------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLK 373 (887)
T ss_pred Hhhcccc----------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchh
Confidence 7899984 45677778999999987765422 11 112233456899999999999998764
Q ss_pred ---Cc-cEEEEEEEeeeecCCCeEEecCC-------CeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceee
Q 004311 385 ---FG-QLTYLRIYEGVIRKGDFIINVNT-------GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFT 452 (762)
Q Consensus 385 ---~G-~l~~~RV~sG~l~~g~~v~~~~~-------~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~ 452 (762)
.. .++|+|||||+++.||.++.... -...+|.++|+++|.+.++.+++++|++++|.|- ......|||
T Consensus 374 ~lp~~~l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~ 453 (887)
T KOG0467|consen 374 YLPQSRLLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLC 453 (887)
T ss_pred hCchhhheeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceec
Confidence 23 58999999999999999998765 1345899999999999999999999999999884 223344888
Q ss_pred cCCCccc-cccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc
Q 004311 453 DGSVKYT-MTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY 531 (762)
Q Consensus 453 ~~~~~~~-l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f 531 (762)
+.....+ +......+|.++++|+|.++.+.++|.++|+.|..-||++.+.. +++||+++...||+|||.|+.+|++ |
T Consensus 454 s~~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-f 531 (887)
T KOG0467|consen 454 SKVPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-F 531 (887)
T ss_pred ccCCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-h
Confidence 8744333 33233448999999999999999999999999999999999988 5899999999999999999999999 8
Q ss_pred -CceEEEeCceeeEEeeeccccceeeeecccCCC-------CCceEEEEEEEEeCCCC----------------------
Q 004311 532 -KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGG-------QGQYGRVIGYIEPLPLG---------------------- 581 (762)
Q Consensus 532 -~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~-------~~~~~~v~~~i~P~~~~---------------------- 581 (762)
++++.+++|.|+||||+.+.+... ..++-| .++ ..+.+++.|+..-
T Consensus 532 a~i~i~vSeP~vpfrET~~e~s~l~---~~~~I~~~~~~~~~~~-~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~ 607 (887)
T KOG0467|consen 532 AKIEISVSEPLVPFRETIIEDSDLL---ANLSIGQETKCLPRGQ-LKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQ 607 (887)
T ss_pred hceEEEecCCccchhhhccccchhh---hhhhcCcccccccccc-eeEEeeecccccceeccccccchhccchhcccccc
Confidence 899999999999999995432211 000000 000 0122222222100
Q ss_pred -----------------------------------------------CCCCceeeecccCCC---------CCcchHHHH
Q 004311 582 -----------------------------------------------SPAKFEFENLLVGQA---------IPSNFIPAI 605 (762)
Q Consensus 582 -----------------------------------------------~~~~~~~~~~~~~~~---------~~~~~~~~i 605 (762)
..++|+|.+....-. +.+ +-+++
T Consensus 608 ~~i~e~~k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~i 686 (887)
T KOG0467|consen 608 VPIDESQKGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESI 686 (887)
T ss_pred ccccccccccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHH
Confidence 011233322211100 112 55889
Q ss_pred HHHHHHHHhcCCcCCCCeeEEEEEEEecccccCCC---cHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchH
Q 004311 606 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDS---SELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQG 682 (762)
Q Consensus 606 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g 682 (762)
..||+.++..||||.||+.+++|.+..+...+.++ ..++..+|++.+|| +|++...|+|+.|||.|+|++..|++|
T Consensus 687 vsgfql~~~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr-~Afl~~~pRl~~aMYsC~I~t~~e~LG 765 (887)
T KOG0467|consen 687 VSGFQLATSSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCR-AAFLCWSPRIMAAMYSCDIQTASEVLG 765 (887)
T ss_pred hhhHhhhhccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHH-HHHhcCCHHHhhhheeeeeeehHHHhh
Confidence 99999999999999999999999999855444333 12467889999999 999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeccccCC--CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhH
Q 004311 683 SVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDV 747 (762)
Q Consensus 683 ~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 747 (762)
+||.+|++|+|+|+++++.+ +.|.|+|++|+.|+|||+.++|..|+|.|+.++.|+||+.++.|+
T Consensus 766 kvYAVlskR~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 766 KVYAVLSKRHGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred hHHhhhhhhcchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCC
Confidence 99999999999999999874 689999999999999999999999999999999999999998854
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=6.6e-76 Score=665.18 Aligned_cols=450 Identities=28% Similarity=0.491 Sum_probs=396.9
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecC-CCccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRG-RDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
...++|||+|+||+|+|||||+++||+.+|.+...+.+++ +....+++|+++.|++||+|+.+....++|++++++|||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 3568999999999999999999999999999999888874 322357899999999999999999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
||||.+|..++.++++.+|++|+|+|+..|+..+++.+|+.+...++|+++|+||+|+.++++.+.++++...++..+.+
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEec------CCChh----hHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTG------EVPAD----METFVAEKRRELIELVSEVDDKLGDMFLS 296 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~------~i~~~----~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (762)
+++||+.+..|.|++|++.++.++|....|...... +.|.. ..+.+.++++++ |.+++.+++
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~------- 238 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNE------- 238 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhccc-------
Confidence 999999999999999999999999965444433322 12211 122344556665 666665543
Q ss_pred CCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEE
Q 004311 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (762)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (762)
++ ++++..+.++|||||||++|.||+.|||.|++++|+|.++... .....+ .++||+++
T Consensus 239 ---~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~---------~~~~~~-~~~~~~~~ 297 (527)
T TIGR00503 239 ---FD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD---------TRTVEP-TEEKFSGF 297 (527)
T ss_pred ---cC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC---------ceecCC-CCCCeeEE
Confidence 22 3556778999999999999999999999999999999754321 011222 56789999
Q ss_pred EEEEee--cC-C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCcee
Q 004311 377 AFKLEE--GR-F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTF 451 (762)
Q Consensus 377 V~k~~~--d~-~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL 451 (762)
|||+.+ || + |+++|+|||||+|++|++|+|.++|+++++++++.++|.+++++++|.|||||++.|+ ++++||||
T Consensus 298 VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl 377 (527)
T TIGR00503 298 VFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTF 377 (527)
T ss_pred EEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEe
Confidence 999998 85 6 9999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ecCCCccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc
Q 004311 452 TDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY 531 (762)
Q Consensus 452 ~~~~~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f 531 (762)
|+.. +..++++.+|+|+++++|+|+++.|++||.+||++|++||| +++..|++|+|++|+|||||||||+++||+++|
T Consensus 378 ~~~~-~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey 455 (527)
T TIGR00503 378 TQGE-KIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEY 455 (527)
T ss_pred cCCC-ceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 9844 67778889999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CceEEEeCceeeEEeee
Q 004311 532 KVDATVGKPRVNFREAV 548 (762)
Q Consensus 532 ~v~v~~~~p~V~yrEti 548 (762)
|+++.+++|.|+.--=+
T Consensus 456 ~v~v~~~~~~v~~~rw~ 472 (527)
T TIGR00503 456 NVEARYEPVNVATARWV 472 (527)
T ss_pred CCeEEEeCCCceEEEEE
Confidence 99999999999865433
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-75 Score=617.98 Aligned_cols=462 Identities=31% Similarity=0.486 Sum_probs=398.0
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC---eeEEE
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQINI 144 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~l 144 (762)
+.++|||++||+|+|||||||.++||..+|.+.+. ....+++|..+.|||||||+.+...++.|++ +.+||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~------~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNL 129 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN------IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNL 129 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCC------CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEe
Confidence 44899999999999999999999999999977542 2226799999999999999999999999998 99999
Q ss_pred EeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccce
Q 004311 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 145 iDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (762)
||||||+||..|+.+.+..||||||||||.+|+++||...+..|.++|+.+|.|+||+|+++++++++..++.+.|+..+
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988875432
Q ss_pred eeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004311 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (762)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (762)
.
T Consensus 210 ~------------------------------------------------------------------------------- 210 (650)
T KOG0462|consen 210 A------------------------------------------------------------------------------- 210 (650)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecC
Q 004311 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (762)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 384 (762)
+++.+||++|.|+..+|++|++.+|+|. ...++||.|++|.++.|+
T Consensus 211 ---------------~~i~vSAK~G~~v~~lL~AII~rVPpP~-------------------~~~d~plr~Lifds~yD~ 256 (650)
T KOG0462|consen 211 ---------------EVIYVSAKTGLNVEELLEAIIRRVPPPK-------------------GIRDAPLRMLIFDSEYDE 256 (650)
T ss_pred ---------------ceEEEEeccCccHHHHHHHHHhhCCCCC-------------------CCCCcchHHHhhhhhhhh
Confidence 3777899999999999999999999997 467899999999999999
Q ss_pred C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecC--cccccccccCCCEEEEcc-c-ccccCceeecCCC---
Q 004311 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSN--EMEDIQEAHAGQIVAVFG-V-DCASGDTFTDGSV--- 456 (762)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~--~~~~v~~a~aGdIv~i~g-l-~~~~GdtL~~~~~--- 456 (762)
+ |.|+++||..|.+++||+|....+++...++.+-+|..+ ...+++...+|+|++..+ + +..+|||++....
T Consensus 257 y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~ 336 (650)
T KOG0462|consen 257 YRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKA 336 (650)
T ss_pred hcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcc
Confidence 8 999999999999999999999998888777766655443 334445566677777555 5 7899999987652
Q ss_pred ccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCC---c-EEEEecchhHHHHHHHHHHhhcC
Q 004311 457 KYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESG---Q-TIISGMGELHLDIYVERIRREYK 532 (762)
Q Consensus 457 ~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etg---e-~il~g~GelHLei~~~rL~~~f~ 532 (762)
...++.++.+.||+++...|.+.+|...|.+++.+|+.+|+++.+..+ .++ + +.+.++|.|||||+++||++|||
T Consensus 337 v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg 415 (650)
T KOG0462|consen 337 VETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLEREYG 415 (650)
T ss_pred cCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHhcC
Confidence 245677788899999999999999999999999999999999999874 333 3 67899999999999999999999
Q ss_pred ceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHH
Q 004311 533 VDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEA 612 (762)
Q Consensus 533 v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a 612 (762)
.++.+++|.|+||--..+..+ +.+ ..| ..|-+
T Consensus 416 ~elivt~PtV~Yr~~~~~~~~-----------------~~i-~np--------~~fp~---------------------- 447 (650)
T KOG0462|consen 416 AELIVTPPTVPYRVVYSNGDE-----------------ILI-SNP--------ALFPD---------------------- 447 (650)
T ss_pred ceeeecCCcceEEEEecCCce-----------------eee-cCh--------hhCCC----------------------
Confidence 999999999999954332211 000 011 00000
Q ss_pred HhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCC
Q 004311 613 ANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 692 (762)
Q Consensus 613 ~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 692 (762)
.+.+ ...|||+...+|.+|+||+|.|+..++.||
T Consensus 448 ----------------------~~~v------------------------~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rR 481 (650)
T KOG0462|consen 448 ----------------------PSDV------------------------KEFLEPYVEATIITPDEYVGAVIELCSERR 481 (650)
T ss_pred ----------------------cccc------------------------hhhcCceEEEEEECcHHHHHHHHHHHHHhh
Confidence 0000 146899999999999999999999999999
Q ss_pred ceeeccccC-CCeEEEEEEechhhhhc-hHHHHhhhcCCeEEEEEEeCceecC
Q 004311 693 GMIVGNDQE-GDDSVITAHVPLNNMFG-YSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 693 g~i~~~~~~-~~~~~i~a~~P~~e~~g-~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
|...++... +.+..++..+|++|+.| |...|.|.|+|+|+|.++|++|++-
T Consensus 482 geq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~s 534 (650)
T KOG0462|consen 482 GEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQAS 534 (650)
T ss_pred hheecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccccc
Confidence 999999876 67889999999999998 9999999999999999999999943
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-73 Score=599.67 Aligned_cols=461 Identities=30% Similarity=0.512 Sum_probs=404.9
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-----eeE
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-----YQI 142 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i 142 (762)
+.++|||++||+|.|||||||.++|+..+|.++.. ....+++|+++.|++||||++.....+.|+. |.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R------em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~l 78 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER------EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVL 78 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChH------HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEE
Confidence 45789999999999999999999999999987653 1126799999999999999999999988753 899
Q ss_pred EEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhcc
Q 004311 143 NIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRH 222 (762)
Q Consensus 143 ~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 222 (762)
||||||||+||..++.+++..|.||+|||||+.|+++||.....+|.+.++-+|.|+||+|++.++++++.+++.+.+|.
T Consensus 79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGi 158 (603)
T COG0481 79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGI 158 (603)
T ss_pred EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCCh
Q 004311 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (762)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (762)
.+..
T Consensus 159 d~~d---------------------------------------------------------------------------- 162 (603)
T COG0481 159 DASD---------------------------------------------------------------------------- 162 (603)
T ss_pred Ccch----------------------------------------------------------------------------
Confidence 5321
Q ss_pred hHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEee
Q 004311 303 GDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE 382 (762)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 382 (762)
.+.+||++|.||+++|++|++.+|+|. .++++|+.|++|..+.
T Consensus 163 ------------------av~~SAKtG~gI~~iLe~Iv~~iP~P~-------------------g~~~~pLkALifDS~y 205 (603)
T COG0481 163 ------------------AVLVSAKTGIGIEDVLEAIVEKIPPPK-------------------GDPDAPLKALIFDSWY 205 (603)
T ss_pred ------------------heeEecccCCCHHHHHHHHHhhCCCCC-------------------CCCCCcceEEEEeccc
Confidence 344699999999999999999999997 6899999999999999
Q ss_pred cCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE-ccc----ccccCceeecCCC
Q 004311 383 GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV-FGV----DCASGDTFTDGSV 456 (762)
Q Consensus 383 d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i-~gl----~~~~GdtL~~~~~ 456 (762)
|++ |.++++||+.|++++||+|..+.+|++..|.++..+.. ...+.+++.||+++.+ +|+ +++.|||++...+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 998 99999999999999999999999999999999987776 6778999999999873 454 7899999985544
Q ss_pred c--cccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHh
Q 004311 457 K--YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRR 529 (762)
Q Consensus 457 ~--~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~ 529 (762)
+ .++++++-..|++++.+.|.+..|.+.|.++|.||..+|.+|.++ +||.+-+-.| +|-|||||+++||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 3 578888889999999999999999999999999999999999875 5787765444 799999999999999
Q ss_pred hcCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHH
Q 004311 530 EYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGF 609 (762)
Q Consensus 530 ~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~ 609 (762)
||++++..+.|.|.|+-..++..+.. +. .|.
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g~~~~-----------------i~-NPs------------------------------- 393 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDGEEIE-----------------VD-NPS------------------------------- 393 (603)
T ss_pred hhCcceEecCCceEEEEEEcCCcEEE-----------------ec-ChH-------------------------------
Confidence 99999999999999996544321110 00 010
Q ss_pred HHHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHh
Q 004311 610 KEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDIN 689 (762)
Q Consensus 610 ~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~ 689 (762)
.+| +-. .+. .+.||+.++.|.+|++|+|.||..++
T Consensus 394 ----------~~P----------------~~~----------~I~---------~i~EP~v~~~ii~P~eylG~vm~Lcq 428 (603)
T COG0481 394 ----------DLP----------------DPN----------KIE---------EIEEPYVKATIITPQEYLGNVMELCQ 428 (603)
T ss_pred ----------hCC----------------Chh----------hhh---------eeeCceeEEEEeCcHHHHHHHHHHHH
Confidence 001 000 011 57799999999999999999999999
Q ss_pred cCCceeeccccCC-CeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 690 KRKGMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 690 ~rrg~i~~~~~~~-~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
.+||...+++.-+ .+..+...+|++|+ ++|.+.|+|.|+|+|||.++|.+|++-+
T Consensus 429 ~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~ 485 (603)
T COG0481 429 EKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD 485 (603)
T ss_pred HhcCceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccc
Confidence 9999999999875 78999999999998 7999999999999999999999998753
No 24
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-72 Score=585.26 Aligned_cols=453 Identities=32% Similarity=0.516 Sum_probs=407.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.++||||||+|+|||||||++.||..+|.......+... +||+.+.|++|||||-+..+.+.|++++||++||||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ER-----vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAER-----VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhh-----hcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 478999999999999999999999999998876666654 999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeee
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (762)
|.||.+++++.++..|+++|+|||.+|..+||+.+++.|.+.+++.|+|+||+|+++++++++++++.+.|-.
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~------- 150 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE------- 150 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999998887665410
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
+...||.
T Consensus 151 -----------------------------------------------------L~A~deQ-------------------- 157 (603)
T COG1217 151 -----------------------------------------------------LGATDEQ-------------------- 157 (603)
T ss_pred -----------------------------------------------------hCCChhh--------------------
Confidence 1011111
Q ss_pred HHHHhcCcceeeecccccCCC----------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEE
Q 004311 310 RRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (762)
--+|++..||+.|. .+++|++.|.+|+|.|. .+.++||.++|+-
T Consensus 158 -------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-------------------~~~d~PlQ~qvt~ 211 (603)
T COG1217 158 -------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-------------------GDLDEPLQMQVTQ 211 (603)
T ss_pred -------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEe
Confidence 02678888887764 57899999999999997 5789999999999
Q ss_pred EeecCC-ccEEEEEEEeeeecCCCeEEecCCC---eEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecC
Q 004311 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDG 454 (762)
Q Consensus 380 ~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~ 454 (762)
..++++ |++..|||++|++|+||.|.....+ ..-||++++-+.|-++.++++|.||||++|.|+ ++..|||+|++
T Consensus 212 Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~ 291 (603)
T COG1217 212 LDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDP 291 (603)
T ss_pred eccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCC
Confidence 999999 9999999999999999999877654 345899999999999999999999999999999 99999999999
Q ss_pred CCccccccCCCCcceeeeeeecCCCC----C-----HHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHH
Q 004311 455 SVKYTMTSMHVPEPVMSLAVQPVSKD----S-----GGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVE 525 (762)
Q Consensus 455 ~~~~~l~~~~~~~Pv~~~~iep~~~~----d-----~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~ 525 (762)
.++..++.+.+-+|.+++.+..+++. + -.++.+.|.+-.+.+-+|+|+--++-..+.++|.|||||-|+++
T Consensus 292 ~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE 371 (603)
T COG1217 292 DNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIE 371 (603)
T ss_pred CCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHH
Confidence 99999999999999999999877652 1 24688889998999999999865556889999999999999999
Q ss_pred HHHhhcCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHH
Q 004311 526 RIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAI 605 (762)
Q Consensus 526 rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i 605 (762)
.+||+ |.|+.+|.|+|.||| +.
T Consensus 372 ~MRRE-GfEl~VsrP~Vi~ke-id-------------------------------------------------------- 393 (603)
T COG1217 372 NMRRE-GFELQVSRPEVIIKE-ID-------------------------------------------------------- 393 (603)
T ss_pred Hhhhc-ceEEEecCceEEEEe-cC--------------------------------------------------------
Confidence 99999 999999999999998 21
Q ss_pred HHHHHHHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHH
Q 004311 606 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVA 685 (762)
Q Consensus 606 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~ 685 (762)
| .++||+-.+.|.||++|.|.|+
T Consensus 394 ---------------------------G------------------------------~~~EP~E~v~iDv~ee~~G~Vi 416 (603)
T COG1217 394 ---------------------------G------------------------------VKCEPFEEVTIDVPEEHQGAVI 416 (603)
T ss_pred ---------------------------C------------------------------cCcCcceeEEecCchhhhhHHH
Confidence 0 3458999999999999999999
Q ss_pred HHHhcCCceeeccccC-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHH
Q 004311 686 GDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQ 748 (762)
Q Consensus 686 ~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 748 (762)
..|..|.|...+|.+. +|+..+...+|.+-+.||.+++-++|+|.|.....|+||+|+.+++.
T Consensus 417 e~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~ 480 (603)
T COG1217 417 EKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIG 480 (603)
T ss_pred HHHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccccc
Confidence 9999999999999987 57999999999999999999999999999999999999999987654
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-63 Score=514.48 Aligned_cols=450 Identities=27% Similarity=0.502 Sum_probs=373.9
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC-ccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
...+.|++|||.|||||||||++.||...|+|...|.|..+. ...+.+||++.|++|||++.++...|+|+++.+||+|
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLD 87 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLD 87 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccC
Confidence 356789999999999999999999999999999999887653 3467899999999999999999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
||||.||...+.+.|..+|.||.||||..|+++||+.+++-|+..++|++-|+||||+.+.++.+.++++.+.|+..+.|
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAP 167 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCC-CeEE---ecCCCh-hhHHHHH-HHHHHHHHHHhcCCHHHHHHHhc-CCC
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNG-EKIV---TGEVPA-DMETFVA-EKRRELIELVSEVDDKLGDMFLS-DEP 299 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g-~~~~---~~~i~~-~~~~~~~-~~~~~l~e~~~~~dd~l~e~~l~-~~~ 299 (762)
+.|||+.+..|.|+.|+.+.....|.+..+ .... ...+.. +..+... ..++.+.|.+. ...+ +.+
T Consensus 168 itWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E--------L~~~a~~~ 239 (528)
T COG4108 168 ITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE--------LVQGAGNE 239 (528)
T ss_pred ccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH--------HHHhhccc
Confidence 999999999999999999998888866432 1111 011100 1111110 11122211110 0000 011
Q ss_pred CChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEE
Q 004311 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (762)
Q Consensus 300 ~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (762)
.+. .++..+...|||||||++|.||+.+|+.++++.|+|..++... . .. ...+..|.+||||
T Consensus 240 Fd~--------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-------~--~v-~p~e~kfsGFVFK 301 (528)
T COG4108 240 FDL--------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-------R--EV-EPTEDKFSGFVFK 301 (528)
T ss_pred cCH--------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-------C--cc-cCCCCccceEEEE
Confidence 111 2345677899999999999999999999999999998554220 0 00 1234459999999
Q ss_pred Eee--cCC--ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecC
Q 004311 380 LEE--GRF--GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDG 454 (762)
Q Consensus 380 ~~~--d~~--G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~ 454 (762)
+.. ||. .++||.||.||.+.+|+++...++|+..+++.-..+++.+++.+++|.||||++|.+- ..++|||++..
T Consensus 302 IQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G 381 (528)
T COG4108 302 IQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG 381 (528)
T ss_pred EEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC
Confidence 986 453 8899999999999999999999999999999999999999999999999999999887 78999999987
Q ss_pred CCccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCce
Q 004311 455 SVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVD 534 (762)
Q Consensus 455 ~~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~ 534 (762)
....++++..-.|=+...|..+++....+|.++|.+|++|- .+++.....+++.+|...|.||+||+.+||++||+++
T Consensus 382 -e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve 459 (528)
T COG4108 382 -EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEG-AVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVE 459 (528)
T ss_pred -ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcC-eeEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCe
Confidence 55667776666788888999999999999999999999997 4556666678999999999999999999999999999
Q ss_pred EEEeCceeeEE
Q 004311 535 ATVGKPRVNFR 545 (762)
Q Consensus 535 v~~~~p~V~yr 545 (762)
+.+.+..++.-
T Consensus 460 ~~~e~~~~~~a 470 (528)
T COG4108 460 AVFEPVNFSTA 470 (528)
T ss_pred EEEeeccceEE
Confidence 99876655443
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.9e-51 Score=430.40 Aligned_cols=270 Identities=59% Similarity=0.951 Sum_probs=262.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+|+||+|||||||+++|++.+|.+.+.+.++++ ++++|+.++|++||+|+++....+.|++++++|||||||.+|
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG---GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC---ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH
Confidence 79999999999999999999999999988888888 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 233 (762)
..++.++++.+|++|+|||+..|++.+|..+|+.+...++|+++|+||+|+.++++...++++++.++..+.+.++|++.
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004311 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (762)
Q Consensus 234 ~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (762)
...|.|++|++.+++|.|...+|......++|+++.+.+.++|.+|+|.+++.||+|||+||++++++.+++.+.|++++
T Consensus 158 ~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~ 237 (270)
T cd01886 158 EDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGT 237 (270)
T ss_pred CCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999955567778889999999999999999999999999999999999999999999999999999
Q ss_pred hcCcceeeecccccCCCchHHHHHHHHhcCCCC
Q 004311 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (762)
Q Consensus 314 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP 346 (762)
..+.++|||||||.++.|++.|||.|.+++|+|
T Consensus 238 ~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 238 IANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=3.8e-47 Score=397.69 Aligned_cols=265 Identities=33% Similarity=0.559 Sum_probs=244.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCC-CccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGR-DGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++|||+|+||+|+|||||+++|++.+|.+.+.+.+++. ..-.+++|+.+.|++||+|+......++|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 47999999999999999999999999999998888731 01166899999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeee
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (762)
|.+|..++..+++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999998999999999999999999889999999999999999999
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCC-eEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGE-KIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~-~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (762)
|++.+..|.|++|++.+++|.|....|. .....++|+++. |.+++.||+|||+|+++++.+.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 9999999999999999999999433333 455566776654 7889999999999999999999999999
Q ss_pred HHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCC
Q 004311 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (762)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP 346 (762)
+++++..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=1.4e-44 Score=381.23 Aligned_cols=268 Identities=36% Similarity=0.562 Sum_probs=256.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+++||+|+|||||+++|++..+.+.+.+.+..+ .+++|+.+.|+++|+|+......+.|+++.+++|||||+.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG---TTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC---cccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH
Confidence 79999999999999999999999998888888877 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 233 (762)
..++..+++.+|++|+|+|+..+...++..+|+++...++|.++|+||+|+.++++.+.++++++.++..+.++++|++.
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004311 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (762)
Q Consensus 234 ~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (762)
+..|.|++|++.++++.|.+ ++.....++|+++.+.+.++|.+|+|.+++.||+|||+||++.+++.+++.+.+++++
T Consensus 158 ~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~ 235 (268)
T cd04170 158 GDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRAL 235 (268)
T ss_pred CCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999965 3335667899999999999999999999999999999999999999999999999999
Q ss_pred hcCcceeeecccccCCCchHHHHHHHHhcCCCC
Q 004311 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (762)
Q Consensus 314 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP 346 (762)
..+.++||+||||+++.|++.||+++.+++|+|
T Consensus 236 ~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 236 RAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=1.3e-43 Score=365.01 Aligned_cols=237 Identities=43% Similarity=0.687 Sum_probs=221.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+++||+|+|||||+++|++.+|.+.+.+.++++ .+++|+.++|++||+|+......+.|++++++|||||||.+|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~---~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG---TTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC---cccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch
Confidence 79999999999999999999999999999988888 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 233 (762)
..++.++++.+|++|+|+|+.+|+..+++.+|+.+.+.++|+++|+||+|+.++++.+.++++++.++..++++|+|+
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~-- 155 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG-- 155 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004311 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (762)
Q Consensus 234 ~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (762)
+++.. + .. .+.+.+|+|.+++.||+|||+||++++++.+++.+.+++++
T Consensus 156 ------~~~~~------~--------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~ 204 (237)
T cd04168 156 ------LAPNI------C--------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARI 204 (237)
T ss_pred ------Eeeee------e--------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 22110 0 01 12358899999999999999999999999999999999999
Q ss_pred hcCcceeeecccccCCCchHHHHHHHHhcCCCC
Q 004311 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (762)
Q Consensus 314 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP 346 (762)
..+.++|||||||.++.|++.|||.|++++|+|
T Consensus 205 ~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 205 AKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 30
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-37 Score=323.50 Aligned_cols=279 Identities=26% Similarity=0.320 Sum_probs=225.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceee--------e--eecCCCccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI--------H--EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~--------~--~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+...|++++||+|||||||+.+|||..|.+++. . .-.+.++++|++|.+++||+||+|++.+...|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456899999999999999999999999998762 1 123345789999999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhH
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWK 211 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~ 211 (762)
+.++++|+|||.||..++..+.++||+|||||||..| +..||+++.-+++..|+.- |+++||||...++ ++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd-e~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD-EE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC-HH
Confidence 9999999999999999999999999999999999998 8999999999999999885 7899999998754 22
Q ss_pred HHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q 004311 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (762)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (762)
.++++.+.++.
T Consensus 164 rf~ei~~~v~~--------------------------------------------------------------------- 174 (428)
T COG5256 164 RFEEIVSEVSK--------------------------------------------------------------------- 174 (428)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 33333332211
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcC-cceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccC
Q 004311 292 DMFLSDEPISSGDLEEAIRRATVAR-KFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKN 358 (762)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~-~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~ 358 (762)
|.+.+... +-+|.+.+||++|.|+.. ||+++. .+..|.
T Consensus 175 -----------------l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~----------- 225 (428)
T COG5256 175 -----------------LLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPE----------- 225 (428)
T ss_pred -----------------HHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCC-----------
Confidence 00000000 013344448888888754 566654 444443
Q ss_pred ccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCE
Q 004311 359 NEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQI 437 (762)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdI 437 (762)
...+.||++.|.+++.-.. |++..|||.+|.|++||+|++.+.+..-.|+.+. .+.++++.+.|||.
T Consensus 226 --------~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie----~~~~~~~~a~~GD~ 293 (428)
T COG5256 226 --------RPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIE----MHHEEISQAEPGDN 293 (428)
T ss_pred --------CCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeee----ecccccccCCCCCe
Confidence 3478999999999998655 9999999999999999999999999888888887 33789999999999
Q ss_pred EE--Eccc---ccccCceeecCCCccc
Q 004311 438 VA--VFGV---DCASGDTFTDGSVKYT 459 (762)
Q Consensus 438 v~--i~gl---~~~~GdtL~~~~~~~~ 459 (762)
+. ++|+ |++.||.+++..+++.
T Consensus 294 i~~~vrgv~~~dI~~Gdv~~~~~n~~t 320 (428)
T COG5256 294 VGFNVRGVEKNDIRRGDVIGHSDNPPT 320 (428)
T ss_pred EEEEecCCchhccCCccEeccCCCCcc
Confidence 88 6776 7999999998876543
No 31
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.1e-36 Score=337.11 Aligned_cols=273 Identities=27% Similarity=0.352 Sum_probs=218.6
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..+..+||+++||+|||||||+++|+...+.. +..+. ...+.+|.+++|+++|+|++.....+.++++.++||||
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~---g~~~~--~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDt 82 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAER---GLNQA--KDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDC 82 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhh---ccccc--cchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEEC
Confidence 35668999999999999999999998543321 11110 01236999999999999999998888888999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
|||.+|...+.+++..+|++++|+|+.+|+..||++++.++...++| +|+++||||+... .+..+.+.+
T Consensus 83 PGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~-------- 152 (394)
T PRK12736 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEM-------- 152 (394)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999999 4789999998521 111111110
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
++.
T Consensus 153 -----------------------------------------------------------------------------~i~ 155 (394)
T PRK12736 153 -----------------------------------------------------------------------------EVR 155 (394)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHHHhcCcceeeecccccCCC--------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEE
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAF 378 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 378 (762)
+.+...-.....+|++++||++|. ++..|++.+.+++|.|. .+.++||.++|+
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~-------------------~~~~~p~r~~I~ 216 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE-------------------RDTDKPFLMPVE 216 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEE
Confidence 111111111234789999999983 68999999999999775 346789999999
Q ss_pred EEeecCC-ccEEEEEEEeeeecCCCeEEecCC--CeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccCce
Q 004311 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDT 450 (762)
Q Consensus 379 k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 450 (762)
+++.+++ |.+++|||++|+|+.||+|++.+. +...+|++|.. ...++++|.|||++++ .|+ +++.|++
T Consensus 217 ~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~v 292 (394)
T PRK12736 217 DVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQV 292 (394)
T ss_pred EEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceE
Confidence 9999998 999999999999999999998876 56678988874 2468899999999974 787 5889999
Q ss_pred eecCC
Q 004311 451 FTDGS 455 (762)
Q Consensus 451 L~~~~ 455 (762)
|++.+
T Consensus 293 l~~~~ 297 (394)
T PRK12736 293 LAKPG 297 (394)
T ss_pred EecCC
Confidence 99875
No 32
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.6e-36 Score=337.46 Aligned_cols=273 Identities=26% Similarity=0.363 Sum_probs=219.5
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..+..+||+++||+|||||||+++|++..+.+... .... ...+|+.++|+++|+|+++....+++++.+++|+||
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~--~~~~---~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDt 82 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA--KAKK---YDEIDSAPEEKARGITINTAHVEYETENRHYAHVDC 82 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc--cccc---cccccCChhhhcCCEeEEccEEEEccCCeEEEEEEC
Confidence 34667999999999999999999999887766321 0111 347899999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
|||.+|...+.+++..+|++++|||+.+|+..||++++..+...++| +|+++||||+... .+..+.+.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~-------- 152 (409)
T CHL00071 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVEL-------- 152 (409)
T ss_pred CChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999999 5689999998532 111111111
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
++.
T Consensus 153 -----------------------------------------------------------------------------~l~ 155 (409)
T CHL00071 153 -----------------------------------------------------------------------------EVR 155 (409)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHHHhcCcceeeecccccCCC------------------chHHHHHHHHhcCCCCcccccccccccCccceeeccCC
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNK------------------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGN 368 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~------------------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~ 368 (762)
..++..-.....+|++++||++|. |+..|++++.+++|.|. .+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~-------------------~~ 216 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPE-------------------RD 216 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCC-------------------CC
Confidence 112111111224788888888875 46889999999988875 34
Q ss_pred CCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecC--CCeEEEcCeEEEeecCcccccccccCCCEEE--Eccc
Q 004311 369 PDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVN--TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV 443 (762)
Q Consensus 369 ~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~--i~gl 443 (762)
.+.||.++|++++.+++ |.+++|||++|+++.||.|.+.+ .+...+|++|... ..++++|.|||+|+ +.|+
T Consensus 217 ~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i 292 (409)
T CHL00071 217 TDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRGI 292 (409)
T ss_pred CCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcCC
Confidence 67899999999999998 99999999999999999998764 3566789888753 34789999999997 4576
Q ss_pred ---ccccCceeecCC
Q 004311 444 ---DCASGDTFTDGS 455 (762)
Q Consensus 444 ---~~~~GdtL~~~~ 455 (762)
+++.||+|++.+
T Consensus 293 ~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 293 QKEDIERGMVLAKPG 307 (409)
T ss_pred CHHHcCCeEEEecCC
Confidence 588999999875
No 33
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2e-36 Score=338.22 Aligned_cols=273 Identities=25% Similarity=0.296 Sum_probs=221.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee---------eecCC-CccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------EVRGR-DGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~---------~v~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+...||+++||+|||||||+++|++..|.+.+.+ .+..+ ..+++++|..++|++||+|++.....++|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999999999887532 11122 2356789999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC---
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVPR-LAFINKLDRMGAD--- 208 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-------~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~--- 208 (762)
+.++|||||||.+|..++..++..+|+||||||+.+|+ ..||+++|.++...++|. |+++||||+...+
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999998 489999999999999996 6899999965432
Q ss_pred --hhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC
Q 004311 209 --PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (762)
Q Consensus 209 --~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (762)
+.++.+++...|+..
T Consensus 165 ~~~~~i~~~i~~~l~~~--------------------------------------------------------------- 181 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKV--------------------------------------------------------------- 181 (446)
T ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 222233332222100
Q ss_pred CHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchH------------HHHHHHHhcCCCCcccccccc
Q 004311 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYAL 354 (762)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~~ 354 (762)
-....-+|++.+||++|.|+. .|++.+.. ++.|.
T Consensus 182 --------------------------g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~-~~~~~------- 227 (446)
T PTZ00141 182 --------------------------GYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT-LEPPK------- 227 (446)
T ss_pred --------------------------CCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC-CCCCC-------
Confidence 000012778888999999985 48888754 44443
Q ss_pred cccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCccccccccc
Q 004311 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (762)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~ 433 (762)
.+.+.||.++|..++..++ |+++.|||.+|+|+.||+|.+.+.+...+|++|... ..++++|.
T Consensus 228 ------------~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~ 291 (446)
T PTZ00141 228 ------------RPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH----HEQLAEAV 291 (446)
T ss_pred ------------cCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec----CcccCEEC
Confidence 2457899999999999987 999999999999999999999999988899988743 46899999
Q ss_pred CCCEEEE--ccc---ccccCceeecCC
Q 004311 434 AGQIVAV--FGV---DCASGDTFTDGS 455 (762)
Q Consensus 434 aGdIv~i--~gl---~~~~GdtL~~~~ 455 (762)
|||.+++ .++ ++..|++|++..
T Consensus 292 aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 292 PGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred CCCEEEEEECCCCHHHcCCceEEecCC
Confidence 9999885 555 578999999864
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2e-36 Score=337.93 Aligned_cols=273 Identities=25% Similarity=0.282 Sum_probs=219.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee--eec--------CCCccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--EVR--------GRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~--~v~--------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+..+||+++||+|||||||+++||+.+|.+.+.+ .+. ..+.+++++|..++|++||+|++.....++|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999999999999876542 111 123457899999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcc-------hhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC---
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVPR-LAFINKLDRMGAD--- 208 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~--- 208 (762)
+.++|||||||.+|..++..+++.+|+||+|||+.+|.. .||+++|.++...++|. |+++||||+...+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999999843 79999999999999975 7889999986221
Q ss_pred --hhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC
Q 004311 209 --PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (762)
Q Consensus 209 --~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (762)
+.+++++++..++.
T Consensus 165 ~~~~~i~~ei~~~l~~---------------------------------------------------------------- 180 (447)
T PLN00043 165 ARYDEIVKEVSSYLKK---------------------------------------------------------------- 180 (447)
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 22223333222210
Q ss_pred CHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchH------------HHHHHHHhcCCCCcccccccc
Q 004311 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYAL 354 (762)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~~ 354 (762)
..+. ..-+|++.+||++|.|+. .|++.+.. +|.|.
T Consensus 181 -----------~g~~--------------~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~------- 227 (447)
T PLN00043 181 -----------VGYN--------------PDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPK------- 227 (447)
T ss_pred -----------cCCC--------------cccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCc-------
Confidence 0000 011567777999999984 37777754 55453
Q ss_pred cccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCccccccccc
Q 004311 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (762)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~ 433 (762)
.+.+.||.++|..++..++ |+++.|||.+|++++||+|.+.+.+...+|+.|.. ...++++|.
T Consensus 228 ------------~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~----~~~~v~~a~ 291 (447)
T PLN00043 228 ------------RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEM----HHESLQEAL 291 (447)
T ss_pred ------------cccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEE----CCeEeCEec
Confidence 3457899999999999887 99999999999999999999999998889999874 356899999
Q ss_pred CCCEEE--Eccc---ccccCceeecCC
Q 004311 434 AGQIVA--VFGV---DCASGDTFTDGS 455 (762)
Q Consensus 434 aGdIv~--i~gl---~~~~GdtL~~~~ 455 (762)
|||.++ +.++ +++.|+.|++..
T Consensus 292 aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 292 PGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred CCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999988 4565 578999999863
No 35
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.1e-35 Score=347.23 Aligned_cols=310 Identities=23% Similarity=0.323 Sum_probs=247.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+.++|+|+||+|||||||+++|.... +..+ ..+|+|.......+.|+++.++||||||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--------v~~~-------------e~~GIT~~iga~~v~~~~~~ItfiDTPG 346 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--------VAAG-------------EAGGITQHIGAYQVETNGGKITFLDTPG 346 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--------cccc-------------ccCceeeeccEEEEEECCEEEEEEECCC
Confidence 466899999999999999999995311 1111 1378999888888999999999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeee
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (762)
|.+|...+.++++.+|++|||+|+++|+..||.++|..+...++|+|+++||+|+.++++..+..++... +..
T Consensus 347 he~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~~------ 419 (787)
T PRK05306 347 HEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GLV------ 419 (787)
T ss_pred CccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-ccc------
Confidence 9999999999999999999999999999999999999999999999999999999876655444443221 000
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
.+ +
T Consensus 420 -------------------------------------------------------------~e-----------~----- 422 (787)
T PRK05306 420 -------------------------------------------------------------PE-----------E----- 422 (787)
T ss_pred -------------------------------------------------------------HH-----------H-----
Confidence 00 0
Q ss_pred HHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccE
Q 004311 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQL 388 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l 388 (762)
++..+|++++||++|.||++|+++|...... . ...++++.|+.++||+++.|++ |.+
T Consensus 423 -----~g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~----------------~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 423 -----WGGDTIFVPVSAKTGEGIDELLEAILLQAEV-L----------------ELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred -----hCCCceEEEEeCCCCCCchHHHHhhhhhhhh-h----------------hcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 1223688999999999999999998752210 0 0125678899999999999998 999
Q ss_pred EEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-cc-ccCceeecCCCc---------
Q 004311 389 TYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFTDGSVK--------- 457 (762)
Q Consensus 389 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~~~~~~--------- 457 (762)
+++||++|+|+.||.|++.+ ++.+|+.|.+....++++|.|||+|.|.|| ++ .+||||+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999853 467888888888889999999999999999 66 899999843211
Q ss_pred ---------------cccccCCCC--c---ceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecch
Q 004311 458 ---------------YTMTSMHVP--E---PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGE 517 (762)
Q Consensus 458 ---------------~~l~~~~~~--~---Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~Ge 517 (762)
..+..+..+ . ..+.+.|.+......+.|..+|.+|..+++.+.+- -.|.|.
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~---------~~~vG~ 626 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII---------HSGVGA 626 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE---------eeccCC
Confidence 112222111 1 26899999999999999999999999999988763 477887
Q ss_pred hHH
Q 004311 518 LHL 520 (762)
Q Consensus 518 lHL 520 (762)
+.-
T Consensus 627 it~ 629 (787)
T PRK05306 627 ITE 629 (787)
T ss_pred CCH
Confidence 753
No 36
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1e-35 Score=333.34 Aligned_cols=272 Identities=25% Similarity=0.351 Sum_probs=217.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+..+||+++||+|||||||+++|++..+.+... ...+ ...+|+.++|+++|+|++.....++++++.++|||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~--~~~~---~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP 152 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGS--APKK---YDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 152 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccc--cccc---cccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC
Confidence 4678999999999999999999999988866431 2222 4579999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
||.+|..++..++..+|++++|||+.+|+..||+++|..+...++| +|+++||||+... ++..+.+.+.
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~-------- 222 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLELVELE-------- 222 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH--HHHHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999999 5789999998542 1111211111
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
+..
T Consensus 223 -----------------------------------------------------------------------------i~~ 225 (478)
T PLN03126 223 -----------------------------------------------------------------------------VRE 225 (478)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHHhcCcceeeecccccCCC------------------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCC
Q 004311 308 AIRRATVARKFIPVFMGSAFKNK------------------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNP 369 (762)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~------------------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~ 369 (762)
.++..-.....+|++.+||++|. ++..|++.|.++.|.|. .+.
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~-------------------r~~ 286 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQ-------------------RQT 286 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCC-------------------Ccc
Confidence 11110001123566666776653 25679999988877664 345
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCC--eEEEcCeEEEeecCcccccccccCCCEEEE--ccc-
Q 004311 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV- 443 (762)
Q Consensus 370 ~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl- 443 (762)
+.||.++|..+|..++ |.++.|+|.+|+|++||.|++.+.+ ...+|+.|... ..++++|.|||.+++ .|+
T Consensus 287 ~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~ 362 (478)
T PLN03126 287 DLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQ 362 (478)
T ss_pred ccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCc
Confidence 7899999999999988 9999999999999999999998765 45678888743 468999999999886 676
Q ss_pred --ccccCceeecCC
Q 004311 444 --DCASGDTFTDGS 455 (762)
Q Consensus 444 --~~~~GdtL~~~~ 455 (762)
+++.|++|++.+
T Consensus 363 ~~di~rG~VL~~~~ 376 (478)
T PLN03126 363 KADIQRGMVLAKPG 376 (478)
T ss_pred HHHcCCccEEecCC
Confidence 578999999875
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.3e-35 Score=329.12 Aligned_cols=272 Identities=25% Similarity=0.357 Sum_probs=215.6
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.++.+||+++||+|||||||+++|++... ..+..+. ...+.+|..++|+++|+|++.....++++++.++|||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~--~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtp 83 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAA--RAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhcccc--cccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECC
Confidence 46689999999999999999999975422 1111111 113579999999999999999999898889999999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
||.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+... ++..+.+.+.
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~-------- 153 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEME-------- 153 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999976 68999998531 1111111100
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
+.+
T Consensus 154 -----------------------------------------------------------------------------i~~ 156 (394)
T TIGR00485 154 -----------------------------------------------------------------------------VRE 156 (394)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHHhcCcceeeecccccCCC--------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEE
Q 004311 308 AIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (762)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (762)
.++..-.....+|++++||++|. ++..|++.+.+++|.|. .+.++||.++|++
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~-------------------~~~~~p~r~~V~~ 217 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE-------------------RETDKPFLMPIED 217 (394)
T ss_pred HHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC-------------------CCCCCCeEEEEEE
Confidence 11110001123789999999875 56789999988888775 3467899999999
Q ss_pred EeecCC-ccEEEEEEEeeeecCCCeEEecCC--CeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccCcee
Q 004311 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTF 451 (762)
Q Consensus 380 ~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL 451 (762)
++.+++ |++++|||.+|++++||+|++.+. ++..+|+.|... ..++++|.|||.+++ .|+ +++.|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999998 999999999999999999998763 567789888852 467899999999975 776 57899999
Q ss_pred ecCC
Q 004311 452 TDGS 455 (762)
Q Consensus 452 ~~~~ 455 (762)
++.+
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9863
No 38
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.9e-35 Score=324.20 Aligned_cols=273 Identities=25% Similarity=0.342 Sum_probs=216.9
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..+...||+++||+|||||||+++|++..+.. +.. .....+.+|..++|+++|+|++.....+++++.+++||||
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~---g~~--~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDt 82 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GGG--EAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDC 82 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhc---CCc--ccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEEC
Confidence 34667999999999999999999998754311 110 1011347999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
|||.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+... .+..+.+...
T Consensus 83 PGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~~e------- 153 (396)
T PRK12735 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEME------- 153 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999976 57999998531 1111111111
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
+.
T Consensus 154 ------------------------------------------------------------------------------i~ 155 (396)
T PRK12735 154 ------------------------------------------------------------------------------VR 155 (396)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 01
Q ss_pred HHHHHHHhcCcceeeecccccCC----------CchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEE
Q 004311 307 EAIRRATVARKFIPVFMGSAFKN----------KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~----------~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (762)
+.+...-.....+|++++||++| .|+..|++++.+.+|.|. .+.++||.++
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~-------------------~~~~~p~r~~ 216 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPE-------------------RAIDKPFLMP 216 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCC-------------------ccCCCCeEEE
Confidence 11110000112378888999998 478999999999999774 3467899999
Q ss_pred EEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC--CeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccC
Q 004311 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASG 448 (762)
Q Consensus 377 V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 448 (762)
|..++..++ |.++.|||.+|++++||+|++.+. ++..+|+.|.. ...++++|.|||.+++ .|+ +++.|
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG 292 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERG 292 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcc
Confidence 999999987 999999999999999999998875 45678888874 3468999999999986 777 68899
Q ss_pred ceeecCC
Q 004311 449 DTFTDGS 455 (762)
Q Consensus 449 dtL~~~~ 455 (762)
++|++.+
T Consensus 293 ~vl~~~~ 299 (396)
T PRK12735 293 QVLAKPG 299 (396)
T ss_pred eEEEcCC
Confidence 9999875
No 39
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.8e-35 Score=329.21 Aligned_cols=274 Identities=27% Similarity=0.353 Sum_probs=221.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee--e--------ecCCCccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--E--------VRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~--~--------v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+...||+++||+|||||||+++|++..|.+.... . -.....+++++|+.++|+++|+|++.....+++++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4578999999999999999999999999886531 0 01113357899999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCC--CcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChh---HHH
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG--GVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW---KVL 213 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~--gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~---~~~ 213 (762)
+.++|||||||.+|...+..+++.+|++|+|+|+.+ ++..|+..++..+...++| +++++||+|+...+.. ...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999888875 7889999998642211 111
Q ss_pred HHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004311 214 DQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDM 293 (762)
Q Consensus 214 ~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~ 293 (762)
+++.+.+
T Consensus 164 ~~i~~~l------------------------------------------------------------------------- 170 (425)
T PRK12317 164 EEVSKLL------------------------------------------------------------------------- 170 (425)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccCccc
Q 004311 294 FLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEE 361 (762)
Q Consensus 294 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~ 361 (762)
...-.....+|++.+||++|.|+++ |+++| +.+|.|.
T Consensus 171 ----------------~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~-------------- 219 (425)
T PRK12317 171 ----------------KMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPE-------------- 219 (425)
T ss_pred ----------------HhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCc--------------
Confidence 0000001135788899999999975 77776 4466653
Q ss_pred eeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE
Q 004311 362 KVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (762)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 440 (762)
.+.+.||.++|..++..++ |+++.|||.+|+++.||+|.+.+.+...+|+.|.. ...+++.|.|||.|++
T Consensus 220 -----~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v~i 290 (425)
T PRK12317 220 -----KPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM----HHEELPQAEPGDNIGF 290 (425)
T ss_pred -----cccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE----CCcccCEECCCCeEEE
Confidence 3467899999999999987 99999999999999999999999998889999874 3468999999999875
Q ss_pred --ccc---ccccCceeecCCC
Q 004311 441 --FGV---DCASGDTFTDGSV 456 (762)
Q Consensus 441 --~gl---~~~~GdtL~~~~~ 456 (762)
.|+ ++..|++|++..+
T Consensus 291 ~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 291 NVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EECCCCHHHccCccEecCCCC
Confidence 566 5789999998654
No 40
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=7.9e-35 Score=322.24 Aligned_cols=273 Identities=25% Similarity=0.353 Sum_probs=216.4
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
+.+..+||+++||+|||||||+++|++..... +. ......+.+|+.++|++||+|+++....+.+++.+++|+||
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~---g~--~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDt 82 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GG--AEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDC 82 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhc---cC--CcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEEC
Confidence 34678999999999999999999998743211 10 01011237899999999999999999888889999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
|||.+|...+..++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+... .+..+.+...
T Consensus 83 PG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~--~~~~~~~~~~------- 153 (396)
T PRK00049 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEME------- 153 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcch--HHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999986 58999998531 1111111111
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
+.
T Consensus 154 ------------------------------------------------------------------------------i~ 155 (396)
T PRK00049 154 ------------------------------------------------------------------------------VR 155 (396)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 11
Q ss_pred HHHHHHHhcCcceeeecccccCCC----------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEE
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (762)
+.+...-.....+|++++||++|. |+..|+++|.+++|.|. .+.++||.++
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~-------------------~~~~~p~r~~ 216 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPE-------------------RAIDKPFLMP 216 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCC-------------------CCCCCCeEEE
Confidence 111110001124778888998875 68899999999998775 3467899999
Q ss_pred EEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC--CeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccC
Q 004311 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASG 448 (762)
Q Consensus 377 V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 448 (762)
|..+|..++ |.++.|||.+|++++||+|.+.+. ++..+|+.|... .+++++|.|||.+++ .|+ ++..|
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G 292 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERG 292 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcc
Confidence 999999987 999999999999999999998765 567788888743 468999999999886 776 67899
Q ss_pred ceeecCC
Q 004311 449 DTFTDGS 455 (762)
Q Consensus 449 dtL~~~~ 455 (762)
++|++.+
T Consensus 293 ~vl~~~~ 299 (396)
T PRK00049 293 QVLAKPG 299 (396)
T ss_pred eEEecCC
Confidence 9999865
No 41
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.1e-34 Score=322.12 Aligned_cols=271 Identities=23% Similarity=0.277 Sum_probs=211.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcee--eeeec----------CCCccccccCChhhhhhhcceeecceEEEeecCee
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR----------GRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQ 141 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~--~~~v~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 141 (762)
||+++||+|||||||+++||+.+|.+.+ .+.++ +.+.++|++|+.++|++||+|++.....++|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999999999876 22221 12456889999999999999999999999999999
Q ss_pred EEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHh
Q 004311 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKL 220 (762)
Q Consensus 142 i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l 220 (762)
++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++| +++|+||||+...+ .+.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886 67899999986433 12222222111
Q ss_pred ccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCC
Q 004311 221 RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI 300 (762)
Q Consensus 221 ~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 300 (762)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (406)
T TIGR02034 161 L------------------------------------------------------------------------------- 161 (406)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccCccceeeccCC
Q 004311 301 SSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGN 368 (762)
Q Consensus 301 ~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~ 368 (762)
..++ .... ..+|++.+||++|.|++. |++.+.. +|.|. .+
T Consensus 162 ------~~~~-~~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~-------------------~~ 213 (406)
T TIGR02034 162 ------AFAE-QLGF-RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVER-------------------DA 213 (406)
T ss_pred ------HHHH-HcCC-CCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCC-------------------Cc
Confidence 0000 0001 135677789999999875 5666643 45443 23
Q ss_pred CCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc---c
Q 004311 369 PDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV---D 444 (762)
Q Consensus 369 ~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl---~ 444 (762)
.+.||.+.|..++...+ +.-..|+|.+|+|++||+|.+.+.+...+|+.|... ..++++|.|||.+++..- +
T Consensus 214 ~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~ 289 (406)
T TIGR02034 214 QDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDEID 289 (406)
T ss_pred CCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCccc
Confidence 56788887777654322 222569999999999999999998988999999743 347899999999997542 5
Q ss_pred cccCceeecCCC
Q 004311 445 CASGDTFTDGSV 456 (762)
Q Consensus 445 ~~~GdtL~~~~~ 456 (762)
+..|++|++++.
T Consensus 290 i~rG~vl~~~~~ 301 (406)
T TIGR02034 290 ISRGDLLAAADS 301 (406)
T ss_pred cCCccEEEcCCC
Confidence 788999998754
No 42
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.1e-34 Score=319.09 Aligned_cols=273 Identities=25% Similarity=0.340 Sum_probs=211.7
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..+..+||+++||+|||||||+++|+... .+.+..... ....+|..++|++||+|++.....+++++++++|+||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAV--AFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccce--eeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 45678999999999999999999996332 111111111 0126899999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
|||.+|...+..++..+|++++|||+.+|+..||++++..+...++|. |+++||||+... .+..+.+...+
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i------ 203 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMEL------ 203 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHH------
Confidence 999999999999999999999999999999999999999999999995 688999998531 11111111110
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
.
T Consensus 204 -------------------------------------------------------------------------------~ 204 (447)
T PLN03127 204 -------------------------------------------------------------------------------R 204 (447)
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHHHHhcCcceeeeccccc---CCCc-------hHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEE
Q 004311 307 EAIRRATVARKFIPVFMGSAF---KNKG-------VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~---~~~G-------i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (762)
+.+...-.....+|++.+||+ +|.| +..|++++.+++|.|. .+.++||.++
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~-------------------r~~~~pfr~~ 265 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPV-------------------RVLDKPFLMP 265 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCC-------------------cccccceEee
Confidence 000000000123566666665 5555 7899999999999775 3457899999
Q ss_pred EEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC----CeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccc
Q 004311 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT----GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCA 446 (762)
Q Consensus 377 V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~----~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~ 446 (762)
|..+|..++ |.++.|||.+|++++||.|++.+. +...+|+.|... ..++++|.|||.+++ .|+ +++
T Consensus 266 I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~ 341 (447)
T PLN03127 266 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQ 341 (447)
T ss_pred EEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCC
Confidence 999999987 999999999999999999998754 356788888744 357899999999984 776 588
Q ss_pred cCceeecCC
Q 004311 447 SGDTFTDGS 455 (762)
Q Consensus 447 ~GdtL~~~~ 455 (762)
.|++|++..
T Consensus 342 rG~Vl~~~~ 350 (447)
T PLN03127 342 RGQVICKPG 350 (447)
T ss_pred CccEEecCC
Confidence 999999863
No 43
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=4.3e-34 Score=321.89 Aligned_cols=276 Identities=23% Similarity=0.261 Sum_probs=213.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcee--eeeec----------CCCccccccCChhhhhhhcceeecceEEEee
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR----------GRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~--~~~v~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (762)
+...||+|+||+|||||||+++||+.+|.+.+ .+.+. +...++|++|+.++|++||+|++.....+++
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45689999999999999999999999999875 22221 2234578999999999999999999999999
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 216 (762)
++++++|||||||.+|..++..+++.+|++|+|||+.+|+..||++++..+...+++ +|+++||||+...+ .+.++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888865 68899999986432 1122222
Q ss_pred HHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Q 004311 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (762)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (762)
.+.+
T Consensus 184 ~~~l---------------------------------------------------------------------------- 187 (474)
T PRK05124 184 REDY---------------------------------------------------------------------------- 187 (474)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccCccceee
Q 004311 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (762)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~ 364 (762)
...+. ........|++.+||++|.|++. |++. .+.+|.|.
T Consensus 188 ---------~~~~~-~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~-L~~i~~~~----------------- 239 (474)
T PRK05124 188 ---------LTFAE-QLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEV-LETVDIQR----------------- 239 (474)
T ss_pred ---------HHHHH-hcCCCCCceEEEEEeecCCCcccccccccccchhhHHHH-HhhcCCCC-----------------
Confidence 00000 00001246788889999999865 4553 35555543
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc
Q 004311 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV 443 (762)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl 443 (762)
.+.+.||.+.|..++...+ ..-..|||.+|+|+.||+|++.+.++..+|+.|... ..++++|.|||.|++..-
T Consensus 240 --~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~L~ 313 (474)
T PRK05124 240 --VVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLVLE 313 (474)
T ss_pred --CCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEEeC
Confidence 2456899998888765332 222569999999999999999999988999999843 346899999999997542
Q ss_pred ---ccccCceeecCCC
Q 004311 444 ---DCASGDTFTDGSV 456 (762)
Q Consensus 444 ---~~~~GdtL~~~~~ 456 (762)
+++.|++|++.+.
T Consensus 314 ~~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 314 DEIDISRGDLLVAADE 329 (474)
T ss_pred CccccCCccEEECCCC
Confidence 6789999998754
No 44
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=4.2e-34 Score=320.63 Aligned_cols=278 Identities=25% Similarity=0.335 Sum_probs=219.6
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee----------eecCCCccccccCChhhhhhhcceeecceEEEeec
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (762)
.+..+||+++||+|||||||+++|++.+|.+.... .-...+.+++++|..++|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35679999999999999999999999999876421 00122345788999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC---cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG---VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLD 214 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g---v~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~ 214 (762)
++.++|||||||.+|...+..+++.+|++|+|+|+.++ ...|+..++..+...+++ +++++||+|+...+.. .++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~-~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE-EFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH-HHH
Confidence 99999999999999999999999999999999999999 778888888888777764 7889999999643221 111
Q ss_pred HHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004311 215 QARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMF 294 (762)
Q Consensus 215 ~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 294 (762)
.+.+.
T Consensus 163 ~~~~e--------------------------------------------------------------------------- 167 (426)
T TIGR00483 163 AIKKE--------------------------------------------------------------------------- 167 (426)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccCccce
Q 004311 295 LSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEK 362 (762)
Q Consensus 295 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~ 362 (762)
+.+.++..-.....+|++.+||++|.|+.+ |+++|. .+|.|.
T Consensus 168 ----------i~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~-~~~~~~--------------- 221 (426)
T TIGR00483 168 ----------VSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALD-ALEPPE--------------- 221 (426)
T ss_pred ----------HHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHh-cCCCCC---------------
Confidence 000011000011236788889999999975 888885 455553
Q ss_pred eeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE-
Q 004311 363 VILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV- 440 (762)
Q Consensus 363 ~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i- 440 (762)
.+.+.||.++|..++..++ |+++.|||.+|+++.||+|.+.+.+...+|++|... ..++++|.|||.+++
T Consensus 222 ----~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~ 293 (426)
T TIGR00483 222 ----KPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH----HEQIEQAEPGDNIGFN 293 (426)
T ss_pred ----CccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC----CcccCEEcCCCEEEEE
Confidence 2457899999999999988 999999999999999999999999988899998743 467999999999885
Q ss_pred -ccc---ccccCceeecCCC
Q 004311 441 -FGV---DCASGDTFTDGSV 456 (762)
Q Consensus 441 -~gl---~~~~GdtL~~~~~ 456 (762)
.|+ +++.|++|++...
T Consensus 294 l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 294 VRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred ECCCChhhcccceEEecCCC
Confidence 665 5789999988653
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=2.4e-33 Score=321.21 Aligned_cols=308 Identities=25% Similarity=0.329 Sum_probs=237.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe-eEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTP 148 (762)
.+-++|+++||+|||||||+++|.... +.. ...+|+|.+.....+.|++. .++|||||
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--------v~~-------------~e~~GIT~~ig~~~v~~~~~~~i~~iDTP 143 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--------VAQ-------------GEAGGITQHIGAYHVENEDGKMITFLDTP 143 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--------ccc-------------ccCCceeecceEEEEEECCCcEEEEEECC
Confidence 355789999999999999999995321 110 11368898888888888665 99999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (762)
||.+|...+.++++.+|++|+|+|+.+|+..||.+++..+...++|+++++||+|+.++++++..+++.. ++..+
T Consensus 144 Ghe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~~---- 218 (587)
T TIGR00487 144 GHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLVP---- 218 (587)
T ss_pred CCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhhH----
Confidence 9999999999999999999999999999999999999999999999999999999977655443333221 11000
Q ss_pred ecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004311 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (762)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (762)
+
T Consensus 219 ---------------------------------------------------------------~---------------- 219 (587)
T TIGR00487 219 ---------------------------------------------------------------E---------------- 219 (587)
T ss_pred ---------------------------------------------------------------H----------------
Confidence 0
Q ss_pred HHHHHhcCcceeeecccccCCCchHHHHHHHHhc--CCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-
Q 004311 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY--LPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (762)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~--lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~- 385 (762)
.++...|++.+||++|.|+++|++++... ++. ...+++.|+.++|++++.+++
T Consensus 220 -----~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~-------------------l~~~~~~~~~~~V~ev~~~~g~ 275 (587)
T TIGR00487 220 -----DWGGDTIFVPVSALTGDGIDELLDMILLQSEVEE-------------------LKANPNGQASGVVIEAQLDKGR 275 (587)
T ss_pred -----hcCCCceEEEEECCCCCChHHHHHhhhhhhhhcc-------------------ccCCCCCCceeEEEEEEEeCCC
Confidence 01112467888999999999999998642 111 124577899999999999997
Q ss_pred ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-cc-ccCceeecCCC-------
Q 004311 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFTDGSV------- 456 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~~~~~------- 456 (762)
|.+++++|++|+|+.||.|.+.+. ..+|..++ ......+++|.||++|.|.|+ ++ .+||+|.-..+
T Consensus 276 G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~---~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~ 350 (587)
T TIGR00487 276 GPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMI---DENGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLV 350 (587)
T ss_pred cEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEE---CCCCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHH
Confidence 999999999999999999998763 23454444 445567899999999999999 55 89999973211
Q ss_pred -----------------ccccccCCC-----CcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe
Q 004311 457 -----------------KYTMTSMHV-----PEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG 514 (762)
Q Consensus 457 -----------------~~~l~~~~~-----~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g 514 (762)
...+..+.. ..|.+.+.|.+......+.|.++|.++..+++.+.+.. .|
T Consensus 351 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~---------~~ 421 (587)
T TIGR00487 351 AEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH---------SG 421 (587)
T ss_pred HHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE---------ee
Confidence 011122211 13789999999999999999999999999999987743 67
Q ss_pred cchhHH
Q 004311 515 MGELHL 520 (762)
Q Consensus 515 ~GelHL 520 (762)
.|.++-
T Consensus 422 vG~i~~ 427 (587)
T TIGR00487 422 VGGITE 427 (587)
T ss_pred cCCCch
Confidence 777753
No 46
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.7e-32 Score=303.51 Aligned_cols=256 Identities=19% Similarity=0.256 Sum_probs=201.5
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-----------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----------- 137 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----------- 137 (762)
.+...||+++||+|||||||+.+|. ...+|.+++|++||+|++.....+.+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLt------------------g~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~ 92 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALS------------------GVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTC 92 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHh------------------CCCcccchhhHHhCCchhccccccccccCcccCCccc
Confidence 3456899999999999999999993 22467889999999999887765521
Q ss_pred ----c------------------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHHcCCC
Q 004311 138 ----K------------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVP 194 (762)
Q Consensus 138 ----~------------------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~~~p 194 (762)
. .+.++|||||||.+|..++..++..+|++++||||.+| ++.||++++..+...+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~ 172 (460)
T PTZ00327 93 YQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLK 172 (460)
T ss_pred ccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCC
Confidence 1 24799999999999999999999999999999999996 799999999999989987
Q ss_pred -EEEEEeCCCCCCCC-hhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHH
Q 004311 195 -RLAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFV 272 (762)
Q Consensus 195 -~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~ 272 (762)
+|+|+||+|+...+ ..+..+++.+.+
T Consensus 173 ~iIVvlNKiDlv~~~~~~~~~~ei~~~l---------------------------------------------------- 200 (460)
T PTZ00327 173 HIIILQNKIDLVKEAQAQDQYEEIRNFV---------------------------------------------------- 200 (460)
T ss_pred cEEEEEecccccCHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 57899999985321 111111111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccc
Q 004311 273 AEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNY 352 (762)
Q Consensus 273 ~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~ 352 (762)
+.. .....|++.+||++|.|++.|++.|.+.+|.|.
T Consensus 201 -------------------------------------~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~----- 236 (460)
T PTZ00327 201 -------------------------------------KGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPK----- 236 (460)
T ss_pred -------------------------------------Hhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCC-----
Confidence 000 123578999999999999999999999999875
Q ss_pred cccccCccceeeccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeecCCCeEEecCCC-------------
Q 004311 353 ALDQKNNEEKVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTG------------- 410 (762)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~------------- 410 (762)
.+.+.||.++|...|... + |.++.|+|.+|++++||+|.+.+.+
T Consensus 237 --------------r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 302 (460)
T PTZ00327 237 --------------RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRP 302 (460)
T ss_pred --------------CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCcccccc
Confidence 345789999998776432 3 8899999999999999999998754
Q ss_pred eEEEcCeEEEeecCcccccccccCCCEEEEc-----cc---ccccCceeecCCC
Q 004311 411 KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSV 456 (762)
Q Consensus 411 ~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~ 456 (762)
...+|++|.. ...++++|.|||.++|. ++ +...|++|+.++.
T Consensus 303 ~~~~VksI~~----~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 303 IRTRIVSLFA----ENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred ceEEEEEEEE----CCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 2457878773 45689999999999874 44 4678999998653
No 47
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=6.6e-32 Score=312.67 Aligned_cols=254 Identities=24% Similarity=0.323 Sum_probs=203.1
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec----CeeEEE
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----DYQINI 144 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~l 144 (762)
..+.++|+|+||+|||||||+++|....... ...+|+|.......+.|. +..++|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~---------------------~e~~GiTq~i~~~~v~~~~~~~~~kItf 299 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ---------------------KEAGGITQKIGAYEVEFEYKDENQKIVF 299 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc---------------------ccCCccccccceEEEEEEecCCceEEEE
Confidence 3577999999999999999999996533321 112677777666555553 589999
Q ss_pred EeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccce
Q 004311 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 145 iDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (762)
||||||.+|...+.++++.+|++|||||+.+|+..||.++|..+...++|+|+|+||+|+.+++.....+++... +.
T Consensus 300 iDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l-- 376 (742)
T CHL00189 300 LDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL-- 376 (742)
T ss_pred EECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc--
Confidence 999999999999999999999999999999999999999999999999999999999999765433333222110 00
Q ss_pred eeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004311 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (762)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (762)
+ .+
T Consensus 377 ----------------------------------------------------------------------l------~e- 379 (742)
T CHL00189 377 ----------------------------------------------------------------------I------PE- 379 (742)
T ss_pred ----------------------------------------------------------------------c------hH-
Confidence 0 00
Q ss_pred HHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecC
Q 004311 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (762)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 384 (762)
..+..+|++++||++|.|+++|+++|..+.+.+. ..++++.|+.++|+++..|+
T Consensus 380 ---------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~-----------------lk~~~~~~~~g~V~e~~iD~ 433 (742)
T CHL00189 380 ---------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED-----------------LKADPTQLAQGIILEAHLDK 433 (742)
T ss_pred ---------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc-----------------ccCCCCCCceEEEEEEEEcC
Confidence 0123578999999999999999999987643211 12456789999999999999
Q ss_pred C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc--ccccCceeecC
Q 004311 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV--DCASGDTFTDG 454 (762)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl--~~~~GdtL~~~ 454 (762)
+ |.++++||++|+|+.||.|.+.+ +..+|+.+.+....++++|.||++|.|.|+ ...+||+|.-.
T Consensus 434 ~~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~ 501 (742)
T CHL00189 434 TKGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVF 501 (742)
T ss_pred CCceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEe
Confidence 8 99999999999999999999875 456788888888899999999999999999 46789988643
No 48
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-32 Score=278.06 Aligned_cols=269 Identities=27% Similarity=0.364 Sum_probs=211.9
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHH---hcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEE
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILF---YTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINII 145 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~---~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 145 (762)
.+..-||+-|||+|||||||+.++.. ..|..... . -.-.|.-|+|+.|||||......++...+.+--+
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~-----k---ydeID~APEEkaRGITIn~aHveYeTa~RhYaH~ 122 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFK-----K---YDEIDKAPEEKARGITINAAHVEYETAKRHYAHT 122 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccc-----c---HhhhhcChhhhhccceEeeeeeeeeccccccccC
Confidence 34568999999999999999998842 21111000 0 1235788999999999999999999999999999
Q ss_pred eCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC-CChhHHHHHHHHHhccc
Q 004311 146 DTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG-ADPWKVLDQARSKLRHH 223 (762)
Q Consensus 146 DTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~-~~~~~~~~~i~~~l~~~ 223 (762)
|+|||.||...++.+....|+|||||.|++|..+||++++-+|++-+++. ++|+||.|... .+..+.++
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVE--------- 193 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVE--------- 193 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999995 78999999852 11111111
Q ss_pred eeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004311 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (762)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (762)
-
T Consensus 194 -------------------------------------------------------------------------------m 194 (449)
T KOG0460|consen 194 -------------------------------------------------------------------------------M 194 (449)
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred HHHHHHHHHHhcCcceeeecccccC---C----Cc---hHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCe
Q 004311 304 DLEEAIRRATVARKFIPVFMGSAFK---N----KG---VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPL 373 (762)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~---~----~G---i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~ 373 (762)
|+++.|...-..+.-.||++|||+- | .| |..|||++.+|+|-|. ++.+.||
T Consensus 195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~-------------------R~~~~pF 255 (449)
T KOG0460|consen 195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE-------------------RDLDKPF 255 (449)
T ss_pred HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc-------------------cccCCCc
Confidence 1122222222234458999999863 2 23 6789999999999997 6789999
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeE--EEcCeEEEeecCcccccccccCCCEEE--Eccc---cc
Q 004311 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKK--IKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV---DC 445 (762)
Q Consensus 374 ~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~--~ki~~i~~~~g~~~~~v~~a~aGdIv~--i~gl---~~ 445 (762)
++.|-.++..++ |+++.||+..|+||+|+++-+...++. ..|+.|-. .+..+++|.|||-++ ++|+ ++
T Consensus 256 l~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiem----F~K~ld~a~AGDn~G~LlRGik~~dv 331 (449)
T KOG0460|consen 256 LLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEM----FRKSLDEAQAGDNLGALLRGIKREDV 331 (449)
T ss_pred eeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHH----HHHHHHhcccccceehhhhcCCHHHH
Confidence 999999999997 999999999999999999998876654 34555542 245789999999988 6788 78
Q ss_pred ccCceeecCCC
Q 004311 446 ASGDTFTDGSV 456 (762)
Q Consensus 446 ~~GdtL~~~~~ 456 (762)
+.|-.++.++.
T Consensus 332 kRGmvl~~pGs 342 (449)
T KOG0460|consen 332 KRGMVLAKPGS 342 (449)
T ss_pred hcccEEecCCc
Confidence 89988887764
No 49
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-31 Score=267.72 Aligned_cols=273 Identities=27% Similarity=0.366 Sum_probs=209.0
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..+..-||+.|||+|||||||+.++..... +.+ .....--.-.|..|+|++|||||..+...++..+..+-.+|+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la---~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDc 82 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---KKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDC 82 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHH---hhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccC
Confidence 356678999999999999999999853221 100 000000123577899999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
|||.||...++.+..++|++|||++|.+|.++||++++-.+++.++|. ++|+||+|+.+.
T Consensus 83 PGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd------------------- 143 (394)
T COG0050 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD------------------- 143 (394)
T ss_pred CChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc-------------------
Confidence 999999999999999999999999999999999999999999999986 788999998641
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
.+|+|.+..+--+|+++|
T Consensus 144 --------------------------------------------------~ellelVemEvreLLs~y------------ 161 (394)
T COG0050 144 --------------------------------------------------EELLELVEMEVRELLSEY------------ 161 (394)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHc------------
Confidence 112222221111222222
Q ss_pred HHHHHHHhcCcceeeecccccCCC--------chHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEE
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAF 378 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 378 (762)
-..+.-.||+.+||+.-. -|.+||+++.+|+|.|. ++.+.||.+.|-
T Consensus 162 ------~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe-------------------r~~dkPflmpvE 216 (394)
T COG0050 162 ------GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE-------------------RDIDKPFLMPVE 216 (394)
T ss_pred ------CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC-------------------Ccccccccccce
Confidence 122334788888887633 26889999999999997 678999999999
Q ss_pred EEeecCC-ccEEEEEEEeeeecCCCeEEecCCCe--EEEcCeEEEeecCcccccccccCCCEEE--Eccc---ccccCce
Q 004311 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV---DCASGDT 450 (762)
Q Consensus 379 k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~~Gdt 450 (762)
.++...+ |++++|||-.|+|+.|+.+.+..-.. +..++.+- ..+...++..|||-++ ++|. ++..|..
T Consensus 217 dvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 217 DVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred eeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceE
Confidence 9998876 99999999999999999999875442 22333322 2245678999999877 5676 6788988
Q ss_pred eecCC
Q 004311 451 FTDGS 455 (762)
Q Consensus 451 L~~~~ 455 (762)
|+.++
T Consensus 293 Lakpg 297 (394)
T COG0050 293 LAKPG 297 (394)
T ss_pred eecCC
Confidence 88765
No 50
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=312.42 Aligned_cols=274 Identities=23% Similarity=0.248 Sum_probs=210.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceee------------eeecCCCccccccCChhhhhhhcceeecceEEEeec
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEI------------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (762)
...||+|+||+|||||||+++|++..|.+... |..++...+++++|..++|+++|+|++.....++++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 44579999999999999999999999988631 111233345789999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQAR 217 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~ 217 (762)
+.+++|||||||.+|...+..++..+|++|+|||+.+|+..||++++..+...++| +++++||||+...+. +.++++.
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~-~~~~~i~ 181 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ-EVFDEIV 181 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchh-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988865 678999999864221 1111111
Q ss_pred HHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC
Q 004311 218 SKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSD 297 (762)
Q Consensus 218 ~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 297 (762)
..+
T Consensus 182 ~~i----------------------------------------------------------------------------- 184 (632)
T PRK05506 182 ADY----------------------------------------------------------------------------- 184 (632)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCChhHHHHHHHHHHhcCcceeeecccccCCCchH------------HHHHHHHhcCCCCcccccccccccCccceeec
Q 004311 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYALDQKNNEEKVIL 365 (762)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 365 (762)
.+.+. .... ...|++++||++|.|++ .|++.+. .+|.|.
T Consensus 185 --------~~~~~-~~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~-~~~~~~------------------ 235 (632)
T PRK05506 185 --------RAFAA-KLGL-HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLE-TVEIAS------------------ 235 (632)
T ss_pred --------HHHHH-HcCC-CCccEEEEecccCCCccccccCCCcccHhHHHHHHh-cCCCCC------------------
Confidence 00000 0000 22567788999999987 3666664 344442
Q ss_pred cCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-
Q 004311 366 SGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV- 443 (762)
Q Consensus 366 ~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl- 443 (762)
...++||.+.|..++...+ +.-..|+|.+|+|++||+|.+.+.++..+|+.|... ..++++|.|||.|++.--
T Consensus 236 -~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~ 310 (632)
T PRK05506 236 -DRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP----DGDLDEAFAGQAVTLTLAD 310 (632)
T ss_pred -CcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC----CceeCEEcCCCeEEEEecC
Confidence 2356899998887765432 233569999999999999999999988999999733 346899999999997432
Q ss_pred --ccccCceeecCCC
Q 004311 444 --DCASGDTFTDGSV 456 (762)
Q Consensus 444 --~~~~GdtL~~~~~ 456 (762)
++..|++|+++++
T Consensus 311 ~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 311 EIDISRGDMLARADN 325 (632)
T ss_pred ccccCCccEEecCCC
Confidence 6789999998764
No 51
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.98 E-value=4e-31 Score=305.26 Aligned_cols=249 Identities=22% Similarity=0.279 Sum_probs=202.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 152 (762)
.|+++||+|||||||+++|. | ..+|..++|+++|+|++.....+.. ++..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g---------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---G---------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---C---------------CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH
Confidence 48999999999999999993 1 1257788899999999988777765 457899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC-hhHHHHHHHHHhccceeeeeec
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVP 230 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~p 230 (762)
|...+..++..+|++++|||+.+|+..||++++..+...++|. ++|+||+|+...+ .....+++.+.+
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l---------- 133 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL---------- 133 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999996 7999999985321 111111111111
Q ss_pred CCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004311 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (762)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (762)
.
T Consensus 134 -------------------------------------------------------------------------------~ 134 (614)
T PRK10512 134 -------------------------------------------------------------------------------R 134 (614)
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEE
Q 004311 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (762)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~ 389 (762)
.. .....|++.+||++|.|++.|++.|.++. .|. .+.++||.++|..++..++ |+++
T Consensus 135 ~~--~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~-------------------~~~~~~~rl~Id~vf~v~G~GtVv 192 (614)
T PRK10512 135 EY--GFAEAKLFVTAATEGRGIDALREHLLQLP-ERE-------------------HAAQHRFRLAIDRAFTVKGAGLVV 192 (614)
T ss_pred hc--CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-ccc-------------------cCcCCCceEEEEEEeccCCCeEEE
Confidence 00 01136888999999999999999998754 343 2356899999999999887 9999
Q ss_pred EEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--cc-c---ccccCceeecCC
Q 004311 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FG-V---DCASGDTFTDGS 455 (762)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l---~~~~GdtL~~~~ 455 (762)
.|+|.+|+++.||+|.+.+.+...+|++|.. ...++++|.||+.+++ .| + +++.||+|++..
T Consensus 193 tGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~----~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 193 TGTALSGEVKVGDTLWLTGVNKPMRVRGLHA----QNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEEecceEecCCEEEEcCCCCcEEEEEEec----CCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 9999999999999999998888888888773 3468999999999986 66 6 678999999763
No 52
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.98 E-value=1.3e-30 Score=289.53 Aligned_cols=256 Identities=23% Similarity=0.306 Sum_probs=200.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (762)
+.-.||+++||+|||||||+++|. ..++|..++|++||+|+......+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~------------------~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~ 68 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT------------------GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAY 68 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh------------------CeecccCHhHHhcCcEEEecccccccccccccCccccc
Confidence 445899999999999999999992 225889999999999999876554442
Q ss_pred ---------------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHHcCCC-EEEEEeC
Q 004311 139 ---------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-RLAFINK 201 (762)
Q Consensus 139 ---------------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~~p-~iiviNK 201 (762)
.+.++|||||||.+|...+..++..+|++++|+|+.++. ..++..++..+...+++ +++|+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK 148 (411)
T PRK04000 69 TTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNK 148 (411)
T ss_pred cccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEe
Confidence 268999999999999999999999999999999999998 89999999988888874 7999999
Q ss_pred CCCCCCChh-HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHH
Q 004311 202 LDRMGADPW-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELI 280 (762)
Q Consensus 202 ~D~~~~~~~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~ 280 (762)
+|+...+.. ...+++...+
T Consensus 149 ~Dl~~~~~~~~~~~~i~~~l------------------------------------------------------------ 168 (411)
T PRK04000 149 IDLVSKERALENYEQIKEFV------------------------------------------------------------ 168 (411)
T ss_pred eccccchhHHHHHHHHHHHh------------------------------------------------------------
Confidence 998542110 0111111110
Q ss_pred HHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCcc
Q 004311 281 ELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE 360 (762)
Q Consensus 281 e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~ 360 (762)
. .. .....|++.+||++|.|++.|++.|.+++|.|.
T Consensus 169 ---------------~--------------~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~------------- 204 (411)
T PRK04000 169 ---------------K--------------GT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE------------- 204 (411)
T ss_pred ---------------c--------------cc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC-------------
Confidence 0 00 012468888999999999999999999998774
Q ss_pred ceeeccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeecCCCeEEecCCCe------------EEEcCeEE
Q 004311 361 EKVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLV 419 (762)
Q Consensus 361 ~~~~~~~~~~~p~~~~V~k~~~d~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~ 419 (762)
.+.+.|+.++|..+|..+ + |.++.|||.+|++++||.|.+.+.++ ..+|++|.
T Consensus 205 ------~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~ 278 (411)
T PRK04000 205 ------RDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLR 278 (411)
T ss_pred ------CCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEE
Confidence 345789999999988432 3 67999999999999999999988653 35788876
Q ss_pred EeecCcccccccccCCCEEEEc-----cc---ccccCceeecCCCc
Q 004311 420 RMHSNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSVK 457 (762)
Q Consensus 420 ~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~~ 457 (762)
. ...++++|.|||.+++. ++ ++..|+.|++++.+
T Consensus 279 ~----~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 279 A----GGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred E----CCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCC
Confidence 3 24689999999998874 44 56789999987543
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=7.8e-32 Score=269.14 Aligned_cols=144 Identities=35% Similarity=0.488 Sum_probs=125.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe--ecCeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDT 147 (762)
+++|||+++||+|||||||+++|++..+.+.+.+..... .+.+|..+.|+++|+|+......+. +.++.++||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDt 77 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK---NAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDT 77 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH---HCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccc---cccccccchhhhcccccccccccccccccccceeeccc
Confidence 478999999999999999999999999887654333322 4578999999999999999999999 99999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHH
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQA 216 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i 216 (762)
|||.+|..++.++++.+|++|+|||+.+|+..|+.+++..+...++|+++|+||||+...++.+.++++
T Consensus 78 PG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~ 146 (188)
T PF00009_consen 78 PGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEI 146 (188)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHH
T ss_pred ccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999733333333333
No 54
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=5e-30 Score=285.15 Aligned_cols=254 Identities=22% Similarity=0.317 Sum_probs=198.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec------------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------ 138 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 138 (762)
...||+++||+|||||||+++|. ...+|..++|++||+|+......+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt------------------~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 64 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT------------------GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYT 64 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh------------------CeecccCHhHHHcCceeEecccccccccccccCcccccc
Confidence 34689999999999999999992 124788999999999999876554321
Q ss_pred --------------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHHcCCC-EEEEEeCC
Q 004311 139 --------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-RLAFINKL 202 (762)
Q Consensus 139 --------------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~~p-~iiviNK~ 202 (762)
+..++|||||||.+|...+..++..+|++|+|||+.+|. ..|+.+++..+...+++ +++++||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~ 144 (406)
T TIGR03680 65 TEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKI 144 (406)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 468999999999999999999999999999999999998 89999999988888765 78999999
Q ss_pred CCCCCChh-HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004311 203 DRMGADPW-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (762)
Q Consensus 203 D~~~~~~~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (762)
|+...+.. ...+++.+.
T Consensus 145 Dl~~~~~~~~~~~~i~~~-------------------------------------------------------------- 162 (406)
T TIGR03680 145 DLVSKEKALENYEEIKEF-------------------------------------------------------------- 162 (406)
T ss_pred ccCCHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence 98642110 111111110
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccc
Q 004311 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (762)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~ 361 (762)
+... ....+|++.+||++|.|++.|+++|...+|.|.
T Consensus 163 ---------------------------l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~-------------- 199 (406)
T TIGR03680 163 ---------------------------VKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPE-------------- 199 (406)
T ss_pred ---------------------------hhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCC--------------
Confidence 0000 012368899999999999999999999998774
Q ss_pred eeeccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeecCCCeEEecCCCe------------EEEcCeEEE
Q 004311 362 KVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVR 420 (762)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~d~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~ 420 (762)
.+.+.|+.++|..++..+ + |.++.|||.+|+|++||+|.+.+.+. ..+|+.|..
T Consensus 200 -----~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~ 274 (406)
T TIGR03680 200 -----RDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA 274 (406)
T ss_pred -----CCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE
Confidence 345789999999888543 2 56999999999999999999987642 246777763
Q ss_pred eecCcccccccccCCCEEEEc-----cc---ccccCceeecCCC
Q 004311 421 MHSNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSV 456 (762)
Q Consensus 421 ~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~ 456 (762)
...++++|.|||.++|. ++ ++..|+.|+.++.
T Consensus 275 ----~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 275 ----GGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ----CCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 34689999999999962 45 5678999998753
No 55
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.3e-30 Score=277.66 Aligned_cols=278 Identities=23% Similarity=0.275 Sum_probs=219.4
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee----------eecCCCccccccCChhhhhhhcceeecceEEEe
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCA 136 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~ 136 (762)
..++...|.+++||+|+|||||..+|||..|.++... .-.....++|++|...+||+||+|++.....|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 3455678999999999999999999999999886521 001125679999999999999999999999999
Q ss_pred ecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCC
Q 004311 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGAD 208 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~ 208 (762)
-+.+.++|+|+|||.||...++.+...||++||||||+.| ...||+++...++.+|+. .||++||||..+++
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 9999999999999999999999999999999999999876 357999999999999987 48899999998775
Q ss_pred hhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCH
Q 004311 209 PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDD 288 (762)
Q Consensus 209 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd 288 (762)
++.+++|...++....
T Consensus 332 -q~RF~eIk~~l~~fL~--------------------------------------------------------------- 347 (603)
T KOG0458|consen 332 -QDRFEEIKNKLSSFLK--------------------------------------------------------------- 347 (603)
T ss_pred -HHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 3445555555432110
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH---------------HHHHHHhcCCCCccccccc
Q 004311 289 KLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP---------------LLDGVLSYLPCPTEVSNYA 353 (762)
Q Consensus 289 ~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~---------------Lld~i~~~lPsP~~~~~~~ 353 (762)
+...+.. ..-+|+|+ |+++|+|+-. ||+.|.. +-.|.
T Consensus 348 -------~~~gf~e-----------s~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~------ 399 (603)
T KOG0458|consen 348 -------ESCGFKE-----------SSVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPE------ 399 (603)
T ss_pred -------HhcCccc-----------CCcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCC------
Confidence 0000000 01256776 8888888643 4444433 32232
Q ss_pred ccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccc
Q 004311 354 LDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEA 432 (762)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a 432 (762)
...+.||++-|..++..+. |..++|||.+|.|.+||+||+++......|+.|- .+..+...+
T Consensus 400 -------------~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~----~~~~~~~~a 462 (603)
T KOG0458|consen 400 -------------RPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLT----SNDEPKTWA 462 (603)
T ss_pred -------------CcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeee----cCCCcceeE
Confidence 2356699999999999987 8899999999999999999999998888888876 346688999
Q ss_pred cCCCEEE--Eccc---ccccCceeec
Q 004311 433 HAGQIVA--VFGV---DCASGDTFTD 453 (762)
Q Consensus 433 ~aGdIv~--i~gl---~~~~GdtL~~ 453 (762)
.|||-|. +.|+ .+..|+++++
T Consensus 463 ~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 463 VAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred eeCCEEEEecCccChhhcccceeeec
Confidence 9999988 4665 5788999985
No 56
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=7.8e-30 Score=293.91 Aligned_cols=250 Identities=22% Similarity=0.280 Sum_probs=202.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+++||+|||||||+++|.. ..+|..++|+++|+|++.....+.+++..++|||||||.+|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg------------------~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTG------------------IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhC------------------ccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH
Confidence 799999999999999999942 12466778899999999999899999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChh-HHHHHHHHHhccceeeeeecC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW-KVLDQARSKLRHHCAAVQVPM 231 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~-~~~~~i~~~l~~~~~~~~~pi 231 (762)
...+..++..+|++|+|+|+.+|+..||.+++..+...++| +++|+||+|+.+.+.. ...+++.+.
T Consensus 64 ~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~------------ 131 (581)
T TIGR00475 64 ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI------------ 131 (581)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999 9999999998532110 001111110
Q ss_pred CCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHH
Q 004311 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (762)
Q Consensus 232 ~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (762)
+..
T Consensus 132 -----------------------------------------------------------------------------l~~ 134 (581)
T TIGR00475 132 -----------------------------------------------------------------------------LNS 134 (581)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEE
Q 004311 312 ATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTY 390 (762)
Q Consensus 312 ~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~ 390 (762)
.......|++.+||++|.|++++++.+.+.++.... ...++||.++|..++..++ |+++.
T Consensus 135 -~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~------------------~~~~~p~r~~Id~~f~v~G~GtVv~ 195 (581)
T TIGR00475 135 -YIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDI------------------KRIQKPLRMAIDRAFKVKGAGTVVT 195 (581)
T ss_pred -hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC------------------cCcCCCcEEEEEEEEecCCcEEEEE
Confidence 000113678888999999999999998776553220 1246899999999999887 99999
Q ss_pred EEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccCceeec
Q 004311 391 LRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTFTD 453 (762)
Q Consensus 391 ~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~~ 453 (762)
|+|.+|+++.||+|.+.+.+...+|+.|.. +..++++|.||+.++| .|+ ++..|..+++
T Consensus 196 G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~----~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~ 259 (581)
T TIGR00475 196 GTAFSGEVKVGDNLRLLPINHEVRVKAIQA----QNQDVEIAYAGQRIALNLMDVEPESLKRGLLILT 259 (581)
T ss_pred EEEecceEecCCEEEECCCCceEEEeEEEE----CCccCCEEECCCEEEEEeCCCCHHHcCCceEEcC
Confidence 999999999999999999999999999973 3467999999999995 566 4678855544
No 57
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=5.9e-29 Score=252.72 Aligned_cols=128 Identities=48% Similarity=0.689 Sum_probs=118.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec----------CeeE
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------DYQI 142 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------~~~i 142 (762)
|||+|+||+|||||||+++|++.+|.+.+.. .+. .+++|+.+.|++||+|+.+....+.|. ++.+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i 75 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLI 75 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCc---eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEE
Confidence 8999999999999999999999999876532 222 678999999999999999998888776 7899
Q ss_pred EEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 143 NIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 143 ~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+|||||||.+|..++..+++.+|++|+|+|+.+|+..||+.+++++...++|+++|+||+|+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 58
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.6e-28 Score=258.87 Aligned_cols=248 Identities=25% Similarity=0.341 Sum_probs=209.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+..||++||||||+.++. ...+|..++|++||+|++....++..+++.+.|||+|||.+|
T Consensus 2 ii~t~GhidHgkT~L~~alt------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~ 63 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF 63 (447)
T ss_pred eEEEeeeeeccchhhhhhhc------------------ccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH
Confidence 58999999999999999992 336788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMG 232 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 232 (762)
...+..++...|.|+||||+++|++.||.+++..+...+++. ++|+||+|+.+. .+ +++.
T Consensus 64 i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r-~e~~---------------- 124 (447)
T COG3276 64 ISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--AR-IEQK---------------- 124 (447)
T ss_pred HHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HH-HHHH----------------
Confidence 999999999999999999999999999999999999999998 999999998532 11 1111
Q ss_pred CcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHH
Q 004311 233 LEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRA 312 (762)
Q Consensus 233 ~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~ 312 (762)
.++++..++
T Consensus 125 -------------------------------------------i~~Il~~l~---------------------------- 133 (447)
T COG3276 125 -------------------------------------------IKQILADLS---------------------------- 133 (447)
T ss_pred -------------------------------------------HHHHHhhcc----------------------------
Confidence 111111110
Q ss_pred HhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEE
Q 004311 313 TVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYL 391 (762)
Q Consensus 313 ~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~ 391 (762)
-.-.|+|..|+.+|.||++|-+.|.+..- +. ..+.+.||..+|...|..++ |+++.|
T Consensus 134 ---l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~------------------e~d~~~~fri~IDraFtVKGvGTVVtG 191 (447)
T COG3276 134 ---LANAKIFKTSAKTGRGIEELKNELIDLLE-EI------------------ERDEQKPFRIAIDRAFTVKGVGTVVTG 191 (447)
T ss_pred ---cccccccccccccCCCHHHHHHHHHHhhh-hh------------------hhccCCceEEEEeeEEEeccccEEEEe
Confidence 01256788899999999999999977654 11 25788999999999999998 999999
Q ss_pred EEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccCceeecCC
Q 004311 392 RIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTFTDGS 455 (762)
Q Consensus 392 RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~~~~ 455 (762)
-|+||+++.||++++.+.|+..+|++|. .....+++|.||+-|++ .|. ++..|+.|.++.
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~v~VRsIq----~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKEVRVRSIQ----AHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEeeeeEEECCEEEEecCCCeEEEEeee----ecCcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999999999999999987 44467899999999995 565 567898888764
No 59
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=251.47 Aligned_cols=306 Identities=21% Similarity=0.254 Sum_probs=219.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceee------------eeecCCCccccccCChhhhhhhcceeecceEEEee
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI------------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (762)
+...++..+|++|.|||||+.+||+.+..+..- +.--+...++...|-++.||+.||||+.+..+|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345679999999999999999999998876431 11111123577899999999999999999999999
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQA 216 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i 216 (762)
+.++|.+.|||||+.|...|..+.+.||.||++|||..|+..||+++--.+...|++. ++.+||||+.+.+ ++..++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 7889999997654 2233333
Q ss_pred HHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Q 004311 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (762)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (762)
...+... .+++
T Consensus 163 ~~dy~~f--------------------------------------------------------a~~L------------- 173 (431)
T COG2895 163 VADYLAF--------------------------------------------------------AAQL------------- 173 (431)
T ss_pred HHHHHHH--------------------------------------------------------HHHc-------------
Confidence 3222100 0000
Q ss_pred CCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccCccceee
Q 004311 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (762)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~ 364 (762)
.+....++|+ ||+.|.||-. ||+.+-..-.
T Consensus 174 ---------------~~~~~~~IPi---SAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i-------------------- 215 (431)
T COG2895 174 ---------------GLKDVRFIPI---SALLGDNVVSKSENMPWYKGPTLLEILETVEI-------------------- 215 (431)
T ss_pred ---------------CCCcceEEec---hhccCCcccccccCCCcccCccHHHHHhhccc--------------------
Confidence 0001123444 8888877632 3332211000
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEcc-
Q 004311 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFG- 442 (762)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~g- 442 (762)
.......||...|-.+..-.. =+---|+|-||++++||.|.+.+.|++.+|++|..+.| ++++|.||+-+.+.=
T Consensus 216 ~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~ 291 (431)
T COG2895 216 ADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVLA 291 (431)
T ss_pred cccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEEc
Confidence 012345567766655432111 12334788899999999999999999999999998865 567899999888643
Q ss_pred --cccccCceeecCCCccccccCCCCcceeeeeeecCCCCCHHHHHHH
Q 004311 443 --VDCASGDTFTDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKA 488 (762)
Q Consensus 443 --l~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~ 488 (762)
+|...||.|+....++. ..-.+..-++++.=+|..+...-.|..+
T Consensus 292 deidisRGd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr~Y~lK~~ 338 (431)
T COG2895 292 DEIDISRGDLIVAADAPPA-VADAFDADVVWMDEEPLLPGRSYDLKIA 338 (431)
T ss_pred ceeecccCcEEEccCCCcc-hhhhcceeEEEecCCCCCCCceEEEEec
Confidence 37899999998766543 2334556678888787777654433333
No 60
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3e-29 Score=260.05 Aligned_cols=319 Identities=20% Similarity=0.253 Sum_probs=244.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceee----------eeecCCCccccccCChhhhhhhcceeecceEEEeec
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEI----------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~----------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (762)
++...|+.++||+++||||+-+.+++.+|.++++ ..-+..|+++|++|+..+|+++|-|+....++|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4678899999999999999999999999887653 223556889999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChh
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVPR-LAFINKLDRMGADPW 210 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-------~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~ 210 (762)
..+++++|+|||..|..+++.+..+||.+++|++|..|. ..||+++..+++..++.. |+++||||-+..+|.
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 999999999999999999999999999999999997663 369999999999999876 788999999877654
Q ss_pred -HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHH
Q 004311 211 -KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDK 289 (762)
Q Consensus 211 -~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~ 289 (762)
+..+++..++...... +-|.+
T Consensus 236 ~eRy~E~~~k~~~fLr~----------------------~g~n~------------------------------------ 257 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRK----------------------LGFNP------------------------------------ 257 (501)
T ss_pred hhhHHHHHHHHHHHHHH----------------------hcccC------------------------------------
Confidence 3344444443211000 00000
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhc--CCCCcccccccccccCccceeeccC
Q 004311 290 LGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY--LPCPTEVSNYALDQKNNEEKVILSG 367 (762)
Q Consensus 290 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~--lPsP~~~~~~~~~~~~~~~~~~~~~ 367 (762)
.....++|+ |.++|.++++..+.++-+ .|++.+... ......+
T Consensus 258 -----------------------~~d~~f~p~---sg~tG~~~k~~~~s~cpwy~gp~fl~~ld---------~l~~~~R 302 (501)
T KOG0459|consen 258 -----------------------KPDKHFVPV---SGLTGANVKDRTDSVCPWYKGPIFLEYLD---------ELPHLER 302 (501)
T ss_pred -----------------------CCCceeeec---ccccccchhhcccccCCcccCCccceehh---------ccCcccc
Confidence 001134554 888899888877644332 233332110 0111236
Q ss_pred CCCCCeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEE--Eccc--
Q 004311 368 NPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV-- 443 (762)
Q Consensus 368 ~~~~p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~--i~gl-- 443 (762)
+.++|+++.|...+.| .|++.+|+|-||++++||.+.++++++...|.+|| .+..+++.+.+||.+- +.|+
T Consensus 303 ~~~GP~~~pI~~Kykd-mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~----~ddvE~~~~~pGenvk~rlkgiee 377 (501)
T KOG0459|consen 303 ILNGPIRCPVANKYKD-MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIY----SDDVETDRVAPGENVKLRLKGIEE 377 (501)
T ss_pred cCCCCEEeehhhhccc-cceEEEEEecccceecCCeEEEccCCcceEEEEEe----cccceeeeccCCcceEEEecccch
Confidence 7899999999877665 58999999999999999999999999999999998 5578999999999987 6787
Q ss_pred -ccccCceeecCCCcc-----------ccccCCCCcceeeeeeecCCCCCHHHH
Q 004311 444 -DCASGDTFTDGSVKY-----------TMTSMHVPEPVMSLAVQPVSKDSGGQF 485 (762)
Q Consensus 444 -~~~~GdtL~~~~~~~-----------~l~~~~~~~Pv~~~~iep~~~~d~~kl 485 (762)
++.+|.+||+++++. +++...+..|-++|.++-....++-.+
T Consensus 378 edi~~GfiL~~~~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i 431 (501)
T KOG0459|consen 378 EDISPGFILCSPNNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI 431 (501)
T ss_pred hhccCceEEecCCCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee
Confidence 789999999998753 233334456778887776655554444
No 61
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=3.6e-27 Score=235.76 Aligned_cols=127 Identities=30% Similarity=0.425 Sum_probs=113.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeec-CCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVR-GRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~-~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.||+++||+|||||||+++|++..... +..+ .+ .+.+|+.++|++||+|++.....+++++.+++|+|||||.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~---g~~~~~~---~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKK---GGAKFKK---YDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc---ccccccc---cccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 689999999999999999999864321 1111 11 3579999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~ 205 (762)
+|..++.++++.+|++++|||+.+|+..|++++|..+.+.++| +|+|+||||+.
T Consensus 77 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 77 DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999998 67899999985
No 62
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.4e-26 Score=252.10 Aligned_cols=252 Identities=29% Similarity=0.353 Sum_probs=199.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---CeeEEEEeC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDT 147 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDT 147 (762)
+-+-|+++||+|||||||++.+-.. +|..+ -.-|||.......+.++ ...+.||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t--------~Va~~-------------EaGGITQhIGA~~v~~~~~~~~~itFiDT 62 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKT--------NVAAG-------------EAGGITQHIGAYQVPLDVIKIPGITFIDT 62 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcC--------ccccc-------------cCCceeeEeeeEEEEeccCCCceEEEEcC
Confidence 3456999999999999999999321 12222 12589999999998884 479999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||..|.....++...+|.+|||||+.+|+.+||.+.+..++..++|+++++||+|++.++++....++.+. |..+.
T Consensus 63 PGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~E-- 139 (509)
T COG0532 63 PGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVPE-- 139 (509)
T ss_pred CcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCHh--
Confidence 999999999999999999999999999999999999999999999999999999999999988887776554 21110
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
+
T Consensus 140 ----------------------------------------------------------------------------~--- 140 (509)
T COG0532 140 ----------------------------------------------------------------------------E--- 140 (509)
T ss_pred ----------------------------------------------------------------------------h---
Confidence 0
Q ss_pred HHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-c
Q 004311 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-G 386 (762)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G 386 (762)
++.-+.++.+||++|+|+++||+++.-..- . ..++.+++.|..+.|.....+++ |
T Consensus 141 -------~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae------v-----------~elka~~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 141 -------WGGDVIFVPVSAKTGEGIDELLELILLLAE------V-----------LELKANPEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred -------cCCceEEEEeeccCCCCHHHHHHHHHHHHH------H-----------HhhhcCCCCcceEEEEEEEeccCCC
Confidence 111245666799999999999999853211 0 12345788999999999999997 9
Q ss_pred cEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-c-cccCceeecC
Q 004311 387 QLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFTDG 454 (762)
Q Consensus 387 ~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~~~ 454 (762)
.++.+-|+.|+|+.||.|...... ..+..+.-....+++.+.++--+-+.|+ + ...||....-
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~-----g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~ 261 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEY-----GRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVV 261 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCC-----CceEEeehhcCCCccccCCCCCeEEeccccccccCceEEec
Confidence 999999999999999999886533 3344555666778888888877888888 3 3467766543
No 63
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-26 Score=231.72 Aligned_cols=306 Identities=22% Similarity=0.307 Sum_probs=215.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (762)
+.--||+++||+|||||||+.+|. .-++|.+.+|-+|||||+..++....-
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als------------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y 69 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS------------------GVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECY 69 (415)
T ss_pred CcceEeeeeeecccchhhheehhh------------------ceeeechhHHHhcCcEEEeccccCceEeCCCCCCCccc
Confidence 345799999999999999999992 347899999999999998877554221
Q ss_pred ---------------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHHcCCC-EEEEEeC
Q 004311 139 ---------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVP-RLAFINK 201 (762)
Q Consensus 139 ---------------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~~~p-~iiviNK 201 (762)
-+++.|+|.|||.-+...|.++....|+|||||+|++. .++||++++-.+.-.++. +|++-||
T Consensus 70 ~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNK 149 (415)
T COG5257 70 TTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNK 149 (415)
T ss_pred ccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecc
Confidence 16799999999999999999999999999999999986 699999999999888877 5788899
Q ss_pred CCCCCCChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004311 202 LDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (762)
Q Consensus 202 ~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (762)
+|+... ++.+++.++.
T Consensus 150 IDlV~~--E~AlE~y~qI-------------------------------------------------------------- 165 (415)
T COG5257 150 IDLVSR--ERALENYEQI-------------------------------------------------------------- 165 (415)
T ss_pred cceecH--HHHHHHHHHH--------------------------------------------------------------
Confidence 999632 2222222111
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccc
Q 004311 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (762)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~ 361 (762)
.+|+++. . ..-.|++.+||..+.+|+.|+++|.+++|.|.
T Consensus 166 ----------k~FvkGt--------------~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~-------------- 205 (415)
T COG5257 166 ----------KEFVKGT--------------V--AENAPIIPISAQHKANIDALIEAIEKYIPTPE-------------- 205 (415)
T ss_pred ----------HHHhccc--------------c--cCCCceeeehhhhccCHHHHHHHHHHhCCCCc--------------
Confidence 1111110 0 01257888899999999999999999999997
Q ss_pred eeeccCCCCCCeEEEEEEEeecCC---------ccEEEEEEEeeeecCCCeEEecCCC-----eEEE----cCeEEEeec
Q 004311 362 KVILSGNPDGPLVALAFKLEEGRF---------GQLTYLRIYEGVIRKGDFIINVNTG-----KKIK----VPRLVRMHS 423 (762)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~d~~---------G~l~~~RV~sG~l~~g~~v~~~~~~-----~~~k----i~~i~~~~g 423 (762)
.|.+.|..+||.+.|..+. |=+.-|-+..|.|+.||+|-+.+.- .+.. .+.|..+++
T Consensus 206 -----rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~a 280 (415)
T COG5257 206 -----RDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQA 280 (415)
T ss_pred -----cCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEe
Confidence 6889999999999987532 3477889999999999999876532 1111 234444444
Q ss_pred CcccccccccCCCEEEEc-ccc--cccCceeecCCCccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceE
Q 004311 424 NEMEDIQEAHAGQIVAVF-GVD--CASGDTFTDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFR 500 (762)
Q Consensus 424 ~~~~~v~~a~aGdIv~i~-gl~--~~~GdtL~~~~~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~ 500 (762)
.. ..+++|.+|-.+++. +|| +..+|-|+..- .-.+-..|+...++.++- ..|+++.-.+-..+
T Consensus 281 g~-~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V---~G~pG~lPpv~~~~~ie~----------~LL~RvvG~~~e~k 346 (415)
T COG5257 281 GG-EDVEEARPGGLVGVGTKLDPTLTKADALVGQV---VGKPGTLPPVWTSIRIEY----------HLLERVVGTKEELK 346 (415)
T ss_pred CC-eeeeeccCCceEEEecccCcchhhhhhhcccc---ccCCCCCCCceEEEEEEe----------eehhhhhCcccccc
Confidence 44 479999999998873 453 44555554321 111122344445555552 23444444444555
Q ss_pred EEEcCCCCcEEEEecch
Q 004311 501 VGLDAESGQTIISGMGE 517 (762)
Q Consensus 501 v~~~~etge~il~g~Ge 517 (762)
++- -.++|.++...|.
T Consensus 347 vep-ik~~E~Lml~VGt 362 (415)
T COG5257 347 VEP-IKTNEVLMLNVGT 362 (415)
T ss_pred ccc-ccCCCeEEEEeec
Confidence 432 3567777766554
No 64
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=236.59 Aligned_cols=285 Identities=22% Similarity=0.341 Sum_probs=218.8
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC-ccccccCChhhhhhhcceeecceEEEeec---------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWK--------- 138 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 138 (762)
.....+|+..||+|||||||+.+|. + |..++|+ ....+.|..+.|.++|.|-+.+..-+.+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--t------G~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--T------GRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--e------cCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 4456799999999999999999983 2 3345554 34678999999999999988777666553
Q ss_pred --------------CeeEEEEeCCCCcCcHHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004311 139 --------------DYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 139 --------------~~~i~liDTPG~~df~~~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~ 202 (762)
+..+.|+||-||+.+...+++++ ...|..+||+.|++|++..|++++..+...++|+|++++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 26789999999999999999998 56899999999999999999999999999999999999999
Q ss_pred CCCCC-ChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004311 203 DRMGA-DPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (762)
Q Consensus 203 D~~~~-~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (762)
|.... ....+++++.+.|.. ...+.+++..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~-v~Rip~~vk~------------------------------------------------ 296 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKR-VGRIPLIVKD------------------------------------------------ 296 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHH-hcccceeeec------------------------------------------------
Confidence 99643 355666666666543 1111111100
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCc-ceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCcc
Q 004311 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARK-FIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE 360 (762)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~-~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~ 360 (762)
.+|. ..+ ..+...++ .+|+|.+|+.+|.|++ +|+.+..+||.-.
T Consensus 297 ----~~d~----------------v~a-a~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr------------- 341 (527)
T COG5258 297 ----TDDV----------------VLA-AKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRR------------- 341 (527)
T ss_pred ----cchh----------------HHh-hhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCccc-------------
Confidence 0110 001 11223344 7999999999999998 6666667888642
Q ss_pred ceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC--C--eEEEcCeEEEeecCcccccccccCC
Q 004311 361 EKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--G--KKIKVPRLVRMHSNEMEDIQEAHAG 435 (762)
Q Consensus 361 ~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~--~~~ki~~i~~~~g~~~~~v~~a~aG 435 (762)
..+..+||.|||.|+|...+ |.++.|-|-+|.++.||++++.+. | .+.+|++|. .++..|++|.||
T Consensus 342 -----~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe----mh~~rvdsa~aG 412 (527)
T COG5258 342 -----RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE----MHHYRVDSAKAG 412 (527)
T ss_pred -----ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE----EeeEEeccccCC
Confidence 13678999999999999998 999999999999999999998764 3 356777776 345689999999
Q ss_pred CEEE--Eccc---ccccCceeecC
Q 004311 436 QIVA--VFGV---DCASGDTFTDG 454 (762)
Q Consensus 436 dIv~--i~gl---~~~~GdtL~~~ 454 (762)
+|+. +.|+ .+..|.+|...
T Consensus 413 ~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 413 SIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred cEEEEEecccCHHHHhcceEecCC
Confidence 9987 5677 47788777664
No 65
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-26 Score=247.84 Aligned_cols=251 Identities=26% Similarity=0.343 Sum_probs=200.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (762)
.+-+-|.|+||+|||||||+++|-...-+.. . .-|||.......+.. +|..++|+|||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-----E----------------~GGITQhIGAF~V~~p~G~~iTFLDTP 209 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-----E----------------AGGITQHIGAFTVTLPSGKSITFLDTP 209 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-----h----------------cCCccceeceEEEecCCCCEEEEecCC
Confidence 4567899999999999999999943221111 1 147887777665544 57899999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (762)
||..|..+..|+...+|.+||||.|.+|+.+||.+.+..++..++|+|+.+||+|++++++++...++... |..+
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi~~---- 284 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GIVV---- 284 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-CccH----
Confidence 99999999999999999999999999999999999999999999999999999999999999888887543 1000
Q ss_pred ecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004311 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (762)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (762)
|.
T Consensus 285 ---------------------------------------------------------------E~--------------- 286 (683)
T KOG1145|consen 285 ---------------------------------------------------------------ED--------------- 286 (683)
T ss_pred ---------------------------------------------------------------HH---------------
Confidence 00
Q ss_pred HHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-cc
Q 004311 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (762)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~ 387 (762)
.+.-++++.+||++|.|++.|.+++.-..- ...+..++++|+-++|.....|++ |.
T Consensus 287 ------~GGdVQvipiSAl~g~nl~~L~eaill~Ae-----------------~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 287 ------LGGDVQVIPISALTGENLDLLEEAILLLAE-----------------VMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred ------cCCceeEEEeecccCCChHHHHHHHHHHHH-----------------HhhcccCCCCCceEEEEEeeecCCccc
Confidence 012256777799999999999999864211 122346799999999999999998 99
Q ss_pred EEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-cc-ccCceee
Q 004311 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFT 452 (762)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~ 452 (762)
++.+-|-.|||++|+.+.... .-.||..++= ..-.++++|.+|.-+-|.|+ ++ ..||-+.
T Consensus 344 ~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D---~nGk~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 344 VATVIVKRGTLKKGSVLVAGK--SWCKVRALFD---HNGKPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred eeEEEEeccccccccEEEEec--hhhhhhhhhh---cCCCCccccCCCCceEeecccCCCCCCceEE
Confidence 999999999999999987643 3346666664 44467999999999999999 65 5687554
No 66
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.95 E-value=6.7e-26 Score=260.59 Aligned_cols=302 Identities=24% Similarity=0.284 Sum_probs=184.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+-+.|+|+||+|||||||+++|..........+.....-. .++.+....+...|.+.......+.+. .++|||||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIG-ATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeec-eeeccccccccccceeccccccccccC--CEEEEECCCh
Confidence 4467999999999999999999543221111110000000 111111111111122111101111111 3899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC-CChhHHHHHHHHHhccceeeeee
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~ 229 (762)
.+|...+.++++.+|++|+|+|+.+|+..||..++..+...++|+++++||+|+.. +..... ..+.+.+..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~------- 153 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK------- 153 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh-------
Confidence 99999999999999999999999999999999999999999999999999999852 100000 000000000
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
-+....+...+...++.. +|.+..+..+.+.. +
T Consensus 154 ----------------------------------~~~~v~~~f~~~l~ev~~------------~L~~~g~~~e~~~~-~ 186 (586)
T PRK04004 154 ----------------------------------QSQRVQQELEEKLYELIG------------QLSELGFSADRFDR-V 186 (586)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHHH------------HHHhcCCChhhhhh-h
Confidence 000111111111112221 23333333333222 1
Q ss_pred HHHHhcCcceeeecccccCCCchHHHHHHHHh----cCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC
Q 004311 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLS----YLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~----~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 385 (762)
+. ....+|++.+||++|.|+++|++.+.. ++|.+.. .+++.|+.+.|++++.+++
T Consensus 187 ~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~------------------~~~~~~~~~~V~ev~~~~g 245 (586)
T PRK04004 187 KD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK------------------IDVEGPGKGTVLEVKEERG 245 (586)
T ss_pred hc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc------------------cCCCCCeEEEEEEEEEeCC
Confidence 11 234578888899999999999998854 3444431 3567899999999999998
Q ss_pred -ccEEEEEEEeeeecCCCeEEecCCCe--EEEcCeEEEee--------cCcccccccccCCCEEEE--ccc-ccccCcee
Q 004311 386 -GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMH--------SNEMEDIQEAHAGQIVAV--FGV-DCASGDTF 451 (762)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl-~~~~GdtL 451 (762)
|++++++|++|+|++||.|...+.+. ..+|..|+... ++....++++.|..-+-+ .|+ +...|+.+
T Consensus 246 ~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 246 LGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred CceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 99999999999999999999887653 35788887552 123455666666554444 365 44556543
No 67
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.94 E-value=1.5e-24 Score=248.28 Aligned_cols=255 Identities=25% Similarity=0.279 Sum_probs=168.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee--------------
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------------- 137 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 137 (762)
.+-|+|+||+|||||||+++|....-.... ..|+|.......+.+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e---------------------~ggiTq~iG~~~v~~~~~~~~~~~~~~~~ 62 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE---------------------AGGITQHIGATEIPMDVIEGICGDLLKKF 62 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccc---------------------CCceecccCeeEeeecccccccccccccc
Confidence 456999999999999999999754221111 122333322222222
Q ss_pred ----cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHH
Q 004311 138 ----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVL 213 (762)
Q Consensus 138 ----~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~ 213 (762)
+...+.|||||||.+|...+.++++.+|++|+|+|+++|+..|+.+++..+...++|+++++||+|+........-
T Consensus 63 ~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 63 KIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred ccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccC
Confidence 1124899999999999999999999999999999999999999999999999999999999999998531100000
Q ss_pred HHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004311 214 DQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDM 293 (762)
Q Consensus 214 ~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~ 293 (762)
..+.+... ..+......+.+....++..+++
T Consensus 143 ~~f~e~sa-----------------------------------------k~~~~v~~~~~~~~~~lv~~l~~-------- 173 (590)
T TIGR00491 143 RPFMESFS-----------------------------------------KQEIQVQQNLDTKVYNLVIKLHE-------- 173 (590)
T ss_pred chHHHHHH-----------------------------------------hhhHHHHHHHHHHHHHHHHHHHh--------
Confidence 00000000 00000111111122222222221
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhc----CCCCcccccccccccCccceeeccCCC
Q 004311 294 FLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY----LPCPTEVSNYALDQKNNEEKVILSGNP 369 (762)
Q Consensus 294 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~----lPsP~~~~~~~~~~~~~~~~~~~~~~~ 369 (762)
..+..+.+.. + .-++..+|++.+||++|.|+++|++++..+ ++... ..++
T Consensus 174 ----~G~~~e~~~~-i---~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l------------------~~~~ 227 (590)
T TIGR00491 174 ----EGFEAERFDR-V---TDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQL------------------KLEE 227 (590)
T ss_pred ----cCccHHhhhh-h---hhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhh------------------ccCC
Confidence 1122211111 1 123445789999999999999999998643 22211 2357
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCe--EEEcCeEEEee
Q 004311 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMH 422 (762)
Q Consensus 370 ~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~ 422 (762)
++|+.+.|..++.+++ |.++.++|++|+|++||.|...+.+. ..+|..|+...
T Consensus 228 ~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~ 283 (590)
T TIGR00491 228 EGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR 283 (590)
T ss_pred CCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCC
Confidence 7899999999999987 99999999999999999999988763 45777776543
No 68
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=7.9e-25 Score=216.37 Aligned_cols=129 Identities=41% Similarity=0.639 Sum_probs=112.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-----cCeeEEEEeC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQINIIDT 147 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDT 147 (762)
|||+++|++|+|||||+++|+...+.+...+ ...++.++.+.|+++|+|.......+.| ++..++||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt 74 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDT 74 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC------CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEEC
Confidence 8999999999999999999999887664311 1156788899999999999988877755 4678999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
|||.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+.+.
T Consensus 75 ~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 75 PGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred CCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 999999999999999999999999999998888988888887889999999999998643
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.93 E-value=7.2e-26 Score=231.46 Aligned_cols=133 Identities=25% Similarity=0.372 Sum_probs=116.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeee--eec-----CCC---ccccccCChhhhhhhcceeecceEEEeecCeeEE
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIH--EVR-----GRD---GVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~--~v~-----~~~---~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (762)
||+++||+|||||||+++|++.+|.+.+.+ .+. .+. .+++++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 799999999999999999999999987643 221 221 1346899999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCC-------CcchhHHHHHHHHHHcC-CCEEEEEeCCCCCC
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVG-------GVQSQSITVDRQMRRYE-VPRLAFINKLDRMG 206 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~-------gv~~qt~~~~~~~~~~~-~p~iiviNK~D~~~ 206 (762)
+||||||.+|...+..+++.+|++|+|||+.+ ++..|+.+++..+...+ .|+++|+||||+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999998 56778999998888777 46788999999974
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.93 E-value=2.6e-25 Score=225.63 Aligned_cols=133 Identities=26% Similarity=0.344 Sum_probs=116.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcee--eeeec--------CCCccccccCChhhhhhhcceeecceEEEeecCeeEE
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR--------GRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~--~~~v~--------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (762)
||+|+||+|||||||+++|++.+|.+.. .+.++ +....++++|..+.|+++|+|++.....+.|++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6999999999999999999999998862 22221 1112367899999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCC
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMG 206 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~ 206 (762)
|||||||.+|...+..+++.+|++|+|+|+.++...++..++..+...++| +|+|+||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 999999999999999999999999999999999999999999988888876 567899999864
No 71
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=1.8e-25 Score=239.73 Aligned_cols=199 Identities=20% Similarity=0.229 Sum_probs=164.2
Q ss_pred cccccCcccccccccccccccccccCCCCc-chh-hccC--CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC
Q 004311 34 AALLQGNFHLQSRQFSAGGNLARAKDDKEP-WWK-ESME--RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD 109 (762)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~--~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~ 109 (762)
+=|+++++++||.|+.++++|+|++....+ .++ ...+ ....|||+|+||+|||||+|+|+.+.+.+. .+.
T Consensus 136 slG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv-----~~~- 209 (444)
T COG1160 136 SLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIV-----SDI- 209 (444)
T ss_pred hcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEe-----cCC-
Confidence 348899999999999999999998865542 221 1111 457899999999999999999998877662 222
Q ss_pred ccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc----------CcH-HHHHHHHHhcCEEEEEEeCCCCcc
Q 004311 110 GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV----------DFT-VEVERALRVLDGAILVLCSVGGVQ 178 (762)
Q Consensus 110 ~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~----------df~-~~~~~al~~aD~aIlVvDa~~gv~ 178 (762)
.|+|+++....++|++..+.||||+|.. .|. ..+..++..||.+++|+||.+|+.
T Consensus 210 --------------aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~ 275 (444)
T COG1160 210 --------------AGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS 275 (444)
T ss_pred --------------CCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch
Confidence 8999999999999999999999999973 222 335788999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCe
Q 004311 179 SQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEK 258 (762)
Q Consensus 179 ~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~ 258 (762)
.|+.++..++.+.+.+++||+||||+...+
T Consensus 276 ~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-------------------------------------------------- 305 (444)
T COG1160 276 EQDLRIAGLIEEAGRGIVIVVNKWDLVEED-------------------------------------------------- 305 (444)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEccccCCch--------------------------------------------------
Confidence 999999999999999999999999984321
Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHH
Q 004311 259 IVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDG 338 (762)
Q Consensus 259 ~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~ 338 (762)
+.+.+++++.+++.+.+..|.|++|+||++|.|++.|+++
T Consensus 306 ----------------------------------------~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 306 ----------------------------------------EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred ----------------------------------------hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHH
Confidence 1133455566777777888999999999999999999999
Q ss_pred HHhc
Q 004311 339 VLSY 342 (762)
Q Consensus 339 i~~~ 342 (762)
+.+.
T Consensus 346 i~~~ 349 (444)
T COG1160 346 IKEI 349 (444)
T ss_pred HHHH
Confidence 8654
No 72
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=2.2e-24 Score=216.54 Aligned_cols=144 Identities=43% Similarity=0.619 Sum_probs=122.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
++|||+++|++|+|||||+++|++..+.+.....+. .+.+|+.+.|+.+|+|+......+.+++..++|||||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~-----~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~ 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVE-----ERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCccc-----ccccccchhHHhcccccccceeEEEECCEEEEEEECCCc
Confidence 479999999999999999999998766654322111 356888999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHH
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSK 219 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~ 219 (762)
.+|...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+....++++.+.
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999988888888888888889999999999999765554444444443
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=6.2e-24 Score=216.38 Aligned_cols=131 Identities=37% Similarity=0.485 Sum_probs=115.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----CeeEEEEeC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQINIIDT 147 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDT 147 (762)
|||+|+||+|+|||||+++|++..+.+.+.++. .....+++|..+.|+++|+|+......+.+. .+.+++|||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~--~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDt 78 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKD--GWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDT 78 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccc--cCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEEC
Confidence 799999999999999999999998887643222 2223668999999999999999988888764 378999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
|||.+|...+..+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 79 pG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999999998899888888888889999999999985
No 74
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.92 E-value=2.1e-24 Score=199.08 Aligned_cols=119 Identities=43% Similarity=0.623 Sum_probs=111.9
Q ss_pred ceeeEEeeeccccc-eeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCc
Q 004311 540 PRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSL 618 (762)
Q Consensus 540 p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl 618 (762)
|+|+|||||+++++ ....++++.|+.++|+.+.++++|.+ +++|.|.+++.++.+|++|+++|++||++++++|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 88999999999999999999999998 459999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCC
Q 004311 619 IGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAK 662 (762)
Q Consensus 619 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~ 662 (762)
+||||+||+|+|.++.+|+++|++.+|+.|+++||+ +||++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~-~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFR-EALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHH-HHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHH-HHHHhcC
Confidence 999999999999999999999999999999999999 9999985
No 75
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=7.9e-24 Score=215.17 Aligned_cols=246 Identities=23% Similarity=0.256 Sum_probs=197.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---------CeeEE
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---------DYQIN 143 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------~~~i~ 143 (762)
-|++++||+|+|||||..+|.... . +...|..+..++||+|.+.....+... ..++.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~-----------S---TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~t 73 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELG-----------S---TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFT 73 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhc-----------c---chhhccCCcccccceeEeecceeeecccccccCccccceeE
Confidence 699999999999999999994321 1 456788899999999999887766432 36789
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCCh-hHHHHHHHHHhcc
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP-WKVLDQARSKLRH 222 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~-~~~~~~i~~~l~~ 222 (762)
|+|+|||..+...++.+....|..++|||+..|.+.||.+++-.........++|+||+|....+. ...++....++
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~-- 151 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKV-- 151 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999888888888999999999743211 11111111111
Q ss_pred ceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCCh
Q 004311 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (762)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (762)
T Consensus 152 -------------------------------------------------------------------------------- 151 (522)
T KOG0461|consen 152 -------------------------------------------------------------------------------- 151 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhcCcceeeecccccCC----CchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEE
Q 004311 303 GDLEEAIRRATVARKFIPVFMGSAFKN----KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAF 378 (762)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~~SA~~~----~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 378 (762)
.+.|. .+.++.-.|++.+||+.| ++|++|.+.+...+--|. +|+.+||.++|.
T Consensus 152 ---~KtLe-~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~-------------------Rd~~gpflm~vD 208 (522)
T KOG0461|consen 152 ---RKTLE-STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK-------------------RDEEGPFLMAVD 208 (522)
T ss_pred ---HHHHH-hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC-------------------cCCCCCeEEEee
Confidence 11111 122334478999999999 899999999988776665 689999999999
Q ss_pred EEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc
Q 004311 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (762)
Q Consensus 379 k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 441 (762)
..+.-++ |++..|.|.+|+++.|+.|-.+--+...||+.+..+ +.+|.+|.+||-.+++
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf----~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMF----KQRVTSAAAGDRAGFC 268 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHH----hhhhhhhhcccceeee
Confidence 9999987 999999999999999999999888877788877643 4579999999998864
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=9.9e-24 Score=213.18 Aligned_cols=116 Identities=24% Similarity=0.323 Sum_probs=100.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------------- 138 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 138 (762)
+||+++||+|||||||+++|. ...+|..+.|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~------------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS------------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYR 62 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh------------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccc
Confidence 589999999999999999992 223678888999999998888777774
Q ss_pred -------------C------eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHHcCC-CEEE
Q 004311 139 -------------D------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEV-PRLA 197 (762)
Q Consensus 139 -------------~------~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~~~-p~ii 197 (762)
+ ++++|||||||.+|...+.+++..+|++++|+|+.++ ...++...+..+...++ |+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iii 142 (203)
T cd01888 63 SKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIII 142 (203)
T ss_pred cccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEE
Confidence 3 7899999999999999999999999999999999984 67788888888877776 5789
Q ss_pred EEeCCCCCC
Q 004311 198 FINKLDRMG 206 (762)
Q Consensus 198 viNK~D~~~ 206 (762)
|+||+|+..
T Consensus 143 vvNK~Dl~~ 151 (203)
T cd01888 143 VQNKIDLVK 151 (203)
T ss_pred EEEchhccC
Confidence 999999853
No 77
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=3.7e-23 Score=207.23 Aligned_cols=119 Identities=26% Similarity=0.390 Sum_probs=104.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--------------C
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------------D 139 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------------~ 139 (762)
||+++||+|+|||||+++|+...+ .+.+|....|+++|+|+......+.+. +
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~--------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS--------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEEN 67 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc--------------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccC
Confidence 799999999999999999975321 345788889999999999988888776 7
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
+.+++||||||.+|......+++.+|++++|+|+.++...++...+..+...++|+++++||+|+..
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 8999999999999988888999999999999999999988888877777778999999999999863
No 78
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.90 E-value=4e-23 Score=188.13 Aligned_cols=115 Identities=24% Similarity=0.293 Sum_probs=105.0
Q ss_pred eeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCC
Q 004311 542 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGH 621 (762)
Q Consensus 542 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~ 621 (762)
|+|||||+++++. .. .++.++++||++|.++++|++++ .++.|.+++.++.+|++|+++|++|++++|++||| ||
T Consensus 1 VaYRETI~~~~~~-~~-~~~~~~~~~~a~v~l~veP~~~g--~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG-VE-HIEVPPNPFWATVGLRVEPLPRG--SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE-EE-EEccCCCcEEEEEEEEEEECCCC--CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999999773 33 44455777899999999999865 47999999999999999999999999999999999 99
Q ss_pred CeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCC
Q 004311 622 PVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAK 662 (762)
Q Consensus 622 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~ 662 (762)
||+||+|+|.++.+|+++|++++|+.|+++|++ +|+.+|+
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~-~a~~~a~ 115 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLR-QALKKAG 115 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHH-HHHHhcC
Confidence 999999999999999999999999999999999 9999874
No 79
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=6e-22 Score=202.36 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=111.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCc-cccccCChhhhhhhcceeecce--------------------
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAA-------------------- 132 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~-------------------- 132 (762)
+|+++||.++|||||+++|.. +.. +++.. ....+|.+++|.++|+|.....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~------~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~ 72 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GEL------DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS 72 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCc------CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc
Confidence 378999999999999999964 221 12211 1346788999999999874333
Q ss_pred ----EEEeecCeeEEEEeCCCCcCcHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 133 ----TSCAWKDYQINIIDTPGHVDFTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 133 ----~~~~~~~~~i~liDTPG~~df~~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
..++..++.++|+|||||.+|...+.+++. .+|++++|+|+.+|...++..++..+...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 123345789999999999999999999986 79999999999999999999999999999999999999999865
Q ss_pred C-ChhHHHHHHHHHhc
Q 004311 207 A-DPWKVLDQARSKLR 221 (762)
Q Consensus 207 ~-~~~~~~~~i~~~l~ 221 (762)
. ...+.++++.+.+.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4 24566677766664
No 80
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.88 E-value=5.4e-21 Score=228.39 Aligned_cols=272 Identities=24% Similarity=0.254 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC------------------eeEEEEe
Q 004311 85 KTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------------YQINIID 146 (762)
Q Consensus 85 KTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------------~~i~liD 146 (762)
||||+++|-... | ......|||.+.....+.++. ..++|||
T Consensus 474 KTtLLD~iR~t~--------v-------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiD 532 (1049)
T PRK14845 474 NTTLLDKIRKTR--------V-------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFID 532 (1049)
T ss_pred cccHHHHHhCCC--------c-------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEE
Confidence 999999993211 1 122347999998888877652 1389999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC-CCChh---HHHHHHHHHhcc
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM-GADPW---KVLDQARSKLRH 222 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~-~~~~~---~~~~~i~~~l~~ 222 (762)
||||.+|.....++++.+|++++|+|+.+|+..||..++..+...++|+++|+||+|+. +++.. .....+
T Consensus 533 TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~------ 606 (1049)
T PRK14845 533 TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNF------ 606 (1049)
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhh------
Confidence 99999999888888999999999999999999999999999999999999999999985 22210 000000
Q ss_pred ceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCCh
Q 004311 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (762)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (762)
.........++-+.+.+. .. .|.+..+..
T Consensus 607 ----------------------------------------------~~q~~~~~~el~~~l~~v----~~-~L~~~G~~~ 635 (1049)
T PRK14845 607 ----------------------------------------------NEQDQHALTELEIKLYEL----IG-KLYELGFDA 635 (1049)
T ss_pred ----------------------------------------------hhhHHHHHHHHHHHHHHH----hh-HHHhcCcch
Confidence 000011111111111000 00 011111111
Q ss_pred hHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEee
Q 004311 303 GDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE 382 (762)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 382 (762)
+.+. .+ -.+...+|++.+||++|.||++|+++|....+.-.+. ....++++|+.++|..++.
T Consensus 636 e~~~-~~---~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~--------------~L~~~~~~~~~g~VlEv~~ 697 (1049)
T PRK14845 636 DRFD-RV---QDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEE--------------RLKLNVEGYAKGTILEVKE 697 (1049)
T ss_pred hhhh-hh---hhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhh--------------hhccCCCCceEEEEEEEEE
Confidence 1110 11 1124568899999999999999999886533211100 0124577899999999999
Q ss_pred cCC-ccEEEEEEEeeeecCCCeEEecCCCe--EEEcCeEEEee--------cCcccccccccCCCEEEEc--cc-ccccC
Q 004311 383 GRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMH--------SNEMEDIQEAHAGQIVAVF--GV-DCASG 448 (762)
Q Consensus 383 d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~--------g~~~~~v~~a~aGdIv~i~--gl-~~~~G 448 (762)
+++ |.++.+.|++|+|++||.|...+.+. ..+|..|+... +.....++++.|+.-|-|. |+ +...|
T Consensus 698 ~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG 777 (1049)
T PRK14845 698 EKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAG 777 (1049)
T ss_pred ecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCC
Confidence 998 99999999999999999999987654 45677666321 2234577888887776664 77 56777
Q ss_pred ceee
Q 004311 449 DTFT 452 (762)
Q Consensus 449 dtL~ 452 (762)
+.+.
T Consensus 778 ~~~~ 781 (1049)
T PRK14845 778 SPIR 781 (1049)
T ss_pred CeEE
Confidence 7654
No 81
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.87 E-value=3.6e-22 Score=195.08 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=109.2
Q ss_pred CceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCC-------------------------------------
Q 004311 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 581 (762)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------- 581 (762)
+|.|+|||||...+...+..+. .++++++++.++|++++
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks----~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAET----PNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCceeeEC----CCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 5999999999987765444443 45567999999999642
Q ss_pred ------CCCCceeeecccCCC----CCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEeccccc--CCCcHHHHHHHH
Q 004311 582 ------SPAKFEFENLLVGQA----IPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAA 649 (762)
Q Consensus 582 ------~~~~~~~~~~~~~~~----~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~ 649 (762)
..++|+|.|.+.+.. +..+++++|++||+||+++||||||||+||+|+|.++.+|. .++++++|+.|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 124588888776433 44578899999999999999999999999999999999998 788999999999
Q ss_pred HHHHHHHHHHhCCCeEeeeeEEE
Q 004311 650 IYAFRQQCYAAAKPVILEPVMLV 672 (762)
Q Consensus 650 ~~a~~~~a~~~a~p~LlEPi~~~ 672 (762)
++||+ +|+++|+|+||||||.|
T Consensus 157 r~a~~-~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACY-SAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHH-HHHHHCCCEEEcceEeC
Confidence 99999 99999999999999975
No 82
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.87 E-value=4.9e-22 Score=181.90 Aligned_cols=116 Identities=59% Similarity=0.951 Sum_probs=111.0
Q ss_pred EEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004311 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (762)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 623 (762)
|||||+++++....+++++||.+||+.|+++++|++++ .++.|.+++.++.+|++|+++|++|+++++++|||+||||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g--~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRG--SGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCC--CCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 89999999987799999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCC
Q 004311 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAK 662 (762)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~ 662 (762)
+||+|+|.++.+|+.+|++++|+.|+++|++ +|+.+|+
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~-~al~~a~ 116 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFK-EAFKKAK 116 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHH-HHHHhcC
Confidence 9999999999999999999999999999999 9999874
No 83
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=4.4e-21 Score=190.73 Aligned_cols=142 Identities=46% Similarity=0.686 Sum_probs=117.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+++|.+|+|||||+++|+...........+. ...++....+..+|+|+......+.+.+..++||||||+.+|
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE-----ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee-----cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH
Confidence 689999999999999999988766543321111 245777788889999999888888999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC-CChhHHHHHHHHHh
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSKL 220 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l 220 (762)
...+..+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.. .+.....+++.+.+
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888888999999999999975 33334444444443
No 84
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=2.5e-22 Score=170.39 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=74.5
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCe--EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD--SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||.|+|.||++++|+|+++|++|||+|++++..++. +.|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998876544 8999999999999999999999999999999999999986
No 85
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.87 E-value=1.4e-21 Score=179.20 Aligned_cols=116 Identities=30% Similarity=0.450 Sum_probs=110.7
Q ss_pred EEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004311 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (762)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 623 (762)
|||||.++++..+.+++++||.++|++|.++++|++++ .++.|.+++.++.+|++|+++|++||++++++|||||+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~--~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERG--SGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCC--CCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 99999999988889999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCC
Q 004311 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAK 662 (762)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~ 662 (762)
+||+|+|.++.+|..++++++|+.|+++||+ +||++|+
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~-~al~~a~ 116 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFE-SAAQKAG 116 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHH-HHHHhcC
Confidence 9999999999999999999999999999999 9999874
No 86
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.86 E-value=1.8e-21 Score=169.07 Aligned_cols=88 Identities=43% Similarity=0.806 Sum_probs=83.1
Q ss_pred eEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccC-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceec
Q 004311 664 VILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAP 742 (762)
Q Consensus 664 ~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~ 742 (762)
+||||||+++|.+|++++|+|+++|++|||+|.++... ++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999988 78999999999999999999999999999999999999999
Q ss_pred CChhHHHHH
Q 004311 743 VSQDVQLQL 751 (762)
Q Consensus 743 v~~~~~~~i 751 (762)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999998874
No 87
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.85 E-value=3.5e-21 Score=177.45 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=105.1
Q ss_pred eeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCC--CCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcC
Q 004311 542 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSP--AKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLI 619 (762)
Q Consensus 542 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~ 619 (762)
|+|||||.++++..+++++++||.+||++|.++++|++++.. .++.|.+.+ ++.+|++|+++|++|+++++++|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 689999999988779999999999999999999999986642 246666555 78899999999999999999999999
Q ss_pred CCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCC
Q 004311 620 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAK 662 (762)
Q Consensus 620 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~ 662 (762)
||||+||+|+|.++.+|+.+|++..+ .|+++|++ +|+.+|+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~-~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQ-KALKSAG 120 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHH-HHHHhcc
Confidence 99999999999999999988776656 88999999 9999874
No 88
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=1.3e-21 Score=168.65 Aligned_cols=83 Identities=48% Similarity=0.868 Sum_probs=79.5
Q ss_pred EeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 665 ILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 665 LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||||.++|.||++++|+|+++|++|||+|.+++..++.+.|+|++|+++++||.++||++|+|+|+++++|+||+++|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECC
Confidence 68999999999999999999999999999999999777789999999999999999999999999999999999999999
Q ss_pred hhH
Q 004311 745 QDV 747 (762)
Q Consensus 745 ~~~ 747 (762)
++.
T Consensus 81 ~~~ 83 (85)
T smart00838 81 KSI 83 (85)
T ss_pred hhh
Confidence 654
No 89
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=4.5e-20 Score=179.06 Aligned_cols=115 Identities=26% Similarity=0.359 Sum_probs=95.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-CeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~d 152 (762)
+|+++|++|+|||||+++|... ..+..+.+..+++|+......+.+. +..+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~------------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI------------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc------------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH
Confidence 7999999999999999999421 0123344556788888877777776 88999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCC-CEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-PRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~-p~iiviNK~D~~~ 206 (762)
|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 99888899999999999999999888888887777666676 8999999999853
No 90
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=1.7e-20 Score=211.56 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=119.4
Q ss_pred cccCcccccccccccccccccccCCCCcchh---hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccc
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWK---ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVG 112 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~ 112 (762)
++.+++.+|+.|+.+..++++.+....+... ...+...+|+++|++|+|||||+++|+.....+. .
T Consensus 133 g~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-----~------ 201 (429)
T TIGR03594 133 GFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIV-----S------ 201 (429)
T ss_pred CCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeec-----C------
Confidence 5668899999999999988876643322211 1123457899999999999999999975433221 1
Q ss_pred cccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHH-----------HHHHHHHhcCEEEEEEeCCCCcchhH
Q 004311 113 AKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV-----------EVERALRVLDGAILVLCSVGGVQSQS 181 (762)
Q Consensus 113 ~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~-----------~~~~al~~aD~aIlVvDa~~gv~~qt 181 (762)
..+|+|++.....+.+++..+.+|||||+.++.. ....+++.+|++|+|+|+.++.+.++
T Consensus 202 ---------~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~ 272 (429)
T TIGR03594 202 ---------DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD 272 (429)
T ss_pred ---------CCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH
Confidence 1268888888888888999999999999865421 23567899999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 182 ITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 182 ~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
..+++.+.+.++|+++|+||||+.
T Consensus 273 ~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 273 LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHHHcCCcEEEEEECcccC
Confidence 999999999999999999999985
No 91
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.6e-20 Score=209.27 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=118.3
Q ss_pred cccCcccccccccccccccccccCCCCcchh--hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWK--ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (762)
++.+++.+|+.|+.+..++.+.+....+... .......+|+++|++|+|||||+|+|+.....+. .
T Consensus 135 g~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-----~------- 202 (435)
T PRK00093 135 GLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIV-----S------- 202 (435)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceee-----c-------
Confidence 3456888999999999888776643211111 1123467899999999999999999986543321 1
Q ss_pred ccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH-----------HHHHHHHHhcCEEEEEEeCCCCcchhHH
Q 004311 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT-----------VEVERALRVLDGAILVLCSVGGVQSQSI 182 (762)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~-----------~~~~~al~~aD~aIlVvDa~~gv~~qt~ 182 (762)
..+|+|++.....+.+++..+.||||||+.+.. ....++++.+|++|+|+|+.+|...|+.
T Consensus 203 --------~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 203 --------DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL 274 (435)
T ss_pred --------CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH
Confidence 126889988888888999999999999974321 2235688999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCC
Q 004311 183 TVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 183 ~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.++.++.+.++|+++++||||+.
T Consensus 275 ~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 275 RIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCC
Confidence 99999999999999999999985
No 92
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=4e-20 Score=210.03 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=117.9
Q ss_pred cccCcccccccccccccccccccCCCCcch-h--hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccc
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWW-K--ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVG 112 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~ 112 (762)
+++.++++||.|+.+..++.+.+....+.. . ......++|+++|++|+|||||+++|+.....+ +.
T Consensus 172 g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~-----~s------ 240 (472)
T PRK03003 172 GLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSV-----VD------ 240 (472)
T ss_pred CCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCccc-----cc------
Confidence 566789999999999999887665433221 1 112457899999999999999999997543211 11
Q ss_pred cccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc---------CcHHHH--HHHHHhcCEEEEEEeCCCCcchhH
Q 004311 113 AKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV---------DFTVEV--ERALRVLDGAILVLCSVGGVQSQS 181 (762)
Q Consensus 113 ~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---------df~~~~--~~al~~aD~aIlVvDa~~gv~~qt 181 (762)
...|+|++.....+.+++..+.||||||.. +|...+ ..+++.+|++|+|+|++++...+.
T Consensus 241 ---------~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~ 311 (472)
T PRK03003 241 ---------DVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQD 311 (472)
T ss_pred ---------CCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHH
Confidence 126788888878888899999999999963 233222 356789999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 182 ITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 182 ~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
..++..+...++|+|+|+||||+..
T Consensus 312 ~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 312 QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999988889999999999999853
No 93
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.83 E-value=1.3e-20 Score=159.47 Aligned_cols=78 Identities=63% Similarity=0.990 Sum_probs=75.7
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||.++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999998777889999999999999999999999999999999999999986
No 94
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.83 E-value=2.7e-20 Score=183.29 Aligned_cols=128 Identities=26% Similarity=0.306 Sum_probs=107.4
Q ss_pred CceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCC-------------------------------------
Q 004311 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 581 (762)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------- 581 (762)
+|.|+|||||...+......+. .++..+++++++|++..
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s----~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKS----PNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCccEEEEc----CCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 5999999999987743232222 34456899999998632
Q ss_pred ------CCCCceeeecccCCCC----CcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccccC--CCcHHHHHHHH
Q 004311 582 ------SPAKFEFENLLVGQAI----PSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAV--DSSELAFKMAA 649 (762)
Q Consensus 582 ------~~~~~~~~~~~~~~~~----~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~ 649 (762)
..++|+|.|...+... +++|+++|++||++|+++||||||||+||+|+|.++.+|.. ++.+++|+.|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 1245888887776555 78999999999999999999999999999999999999985 78889999999
Q ss_pred HHHHHHHHHHhCCCeEeeeeEE
Q 004311 650 IYAFRQQCYAAAKPVILEPVML 671 (762)
Q Consensus 650 ~~a~~~~a~~~a~p~LlEPi~~ 671 (762)
++||+ +|+++|+|+||||||.
T Consensus 157 r~a~~-~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 157 RRACY-AAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHH-HHHhhCCCEEEccccC
Confidence 99999 9999999999999984
No 95
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.82 E-value=1.5e-20 Score=157.03 Aligned_cols=75 Identities=44% Similarity=0.866 Sum_probs=70.6
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeC
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGK 539 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~ 539 (762)
+|+|+++++|+|.++.|.++|.+||++|.+|||+|++.+|++|||++|+||||+||||+++||+++||++++++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999873
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1e-19 Score=195.76 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=99.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.|+|+|++|+|||||+|+|+...-++ |++. +|+|.+......+|.++.|.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-----V~D~---------------pGvTRDr~y~~~~~~~~~f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-----VSDT---------------PGVTRDRIYGDAEWLGREFILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE-----eecC---------------CCCccCCccceeEEcCceEEEEECCCCCc
Confidence 579999999999999999996544333 3333 89999999999999999999999999864
Q ss_pred c-----H----HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 153 F-----T----VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f-----~----~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
. . .++..|+..||++|||||+.+|++++++.+.+.++..++|+|+|+||+|..
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 2 2 345788999999999999999999999999999998889999999999974
No 97
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.82 E-value=2.5e-20 Score=157.77 Aligned_cols=78 Identities=27% Similarity=0.489 Sum_probs=75.7
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999998877899999999999999999999999999999999999999974
No 98
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.1e-19 Score=215.93 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=118.1
Q ss_pred cccCcccccccccccccccccccCCCCcchhh-----ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCc
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKE-----SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG 110 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~ 110 (762)
++..++++||.|+.++.++.+.+....+.... ..+..++|+++|++|+|||||+|+|+.....+ +.
T Consensus 409 g~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~-----v~---- 479 (712)
T PRK09518 409 GLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAV-----VN---- 479 (712)
T ss_pred CCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccc-----cC----
Confidence 45578899999999999988766443322111 12456899999999999999999997543221 11
Q ss_pred cccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc---------CcHHH--HHHHHHhcCEEEEEEeCCCCcch
Q 004311 111 VGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV---------DFTVE--VERALRVLDGAILVLCSVGGVQS 179 (762)
Q Consensus 111 ~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---------df~~~--~~~al~~aD~aIlVvDa~~gv~~ 179 (762)
...|+|++.....+.+++..+.||||||+. +|... ...+++.+|++|+|+|++++.+.
T Consensus 480 -----------~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~ 548 (712)
T PRK09518 480 -----------DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISE 548 (712)
T ss_pred -----------CCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCH
Confidence 126788888888888999999999999963 23322 24567899999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 180 QSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 180 qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
++..++..+...++|+++|+||||+..
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 999999999889999999999999853
No 99
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.81 E-value=3.8e-20 Score=156.81 Aligned_cols=78 Identities=53% Similarity=0.917 Sum_probs=75.8
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999877789999999999999999999999999999999999999986
No 100
>COG1159 Era GTPase [General function prediction only]
Probab=99.81 E-value=3.4e-19 Score=182.02 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=95.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
---|||+|+||+|||||+|+|+...-+| +++. ..+|+......+..++.++.|+||||..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisI-----vS~k---------------~QTTR~~I~GI~t~~~~QiIfvDTPGih 65 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRNRIRGIVTTDNAQIIFVDTPGIH 65 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEe-----ecCC---------------cchhhhheeEEEEcCCceEEEEeCCCCC
Confidence 3469999999999999999998654444 2333 5667777777788889999999999973
Q ss_pred C--------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 152 D--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 d--------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
. ....+..++..+|++++|+|+.++....++.++..+...+.|+++++||+|+..
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 2 344567788999999999999999999999999999988899999999999854
No 101
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1e-18 Score=170.45 Aligned_cols=114 Identities=32% Similarity=0.383 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---CeeEEEEeCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDTPG 149 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG 149 (762)
+.|+|+|++|+|||||+++|+...-.. ...+++|.......+.+. +..+++|||||
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG 59 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA---------------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPG 59 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc---------------------ccCCCeEEeeccEEEecccCCcceEEEEeCCC
Confidence 359999999999999999996421110 012455665555556654 78999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
+.+|...+..+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 60 HEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred cHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 9999888888999999999999999998888888888888899999999999998643
No 102
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.80 E-value=7.8e-20 Score=155.68 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=74.3
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCC--CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||+++|.+|++++|+|+++|++|||.|.+++..+ +...|+|++|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999988753 458999999999999999999999999999999999999986
No 103
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.80 E-value=1.7e-19 Score=152.96 Aligned_cols=77 Identities=25% Similarity=0.547 Sum_probs=74.3
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
||||+++|.||++|+|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999865 68999999999999999999999999999999999999975
No 104
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=6.6e-19 Score=208.01 Aligned_cols=239 Identities=17% Similarity=0.151 Sum_probs=173.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+|+|. |...+ +.+ ..|+|++.....+.++++++++|||||+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt---g~~~~------------vgn------~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT---GARQR------------VGN------WAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCc------------cCC------CCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 579999999999999999994 32211 111 178899988888999999999999999988
Q ss_pred cHHH----------HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC-CChhHHHHHHHHH
Q 004311 153 FTVE----------VERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSK 219 (762)
Q Consensus 153 f~~~----------~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~ 219 (762)
|... ...++ ..+|++|+|+|+++.. +....+.++.+.++|+++++||+|+.. .......+++.+.
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~ 140 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR 140 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH
Confidence 7531 11222 3789999999998853 345577788889999999999999863 3445567888889
Q ss_pred hccceeeeeecCCCc-CcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC-CHHHHHHHhcC
Q 004311 220 LRHHCAAVQVPMGLE-DQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV-DDKLGDMFLSD 297 (762)
Q Consensus 220 l~~~~~~~~~pi~~~-~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~-dd~l~e~~l~~ 297 (762)
++....++..+.+.+ +++.+.++... .. .+ ....+.|+++.+.+.+.+..+.+.+++. ++.++.+|+++
T Consensus 141 LG~pVvpiSA~~g~GIdeL~~~I~~~~------~~-~~--~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEg 211 (772)
T PRK09554 141 LGCPVIPLVSTRGRGIEALKLAIDRHQ------AN-EN--VELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEG 211 (772)
T ss_pred hCCCEEEEEeecCCCHHHHHHHHHHhh------hc-cC--CcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcC
Confidence 998877777666554 33333333221 00 01 1124567777787888888887777765 78899999998
Q ss_pred CCCChh------HHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcC
Q 004311 298 EPISSG------DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYL 343 (762)
Q Consensus 298 ~~~~~~------~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~l 343 (762)
+....+ ++.+.+++.+......|.+++++.+..+++.+++.++...
T Consensus 212 D~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 212 DIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred chHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 755443 4455555555555567889999999999999999998654
No 105
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.80 E-value=4e-19 Score=182.66 Aligned_cols=284 Identities=18% Similarity=0.215 Sum_probs=206.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcc-ccccCChhhhhhhcceeecceEEE----------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLEREKGITIQSAATSC---------------- 135 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~-~~~~d~~~~e~~~giTi~~~~~~~---------------- 135 (762)
.+|+++|.+|+|||||+..|.. ++.+++... .+-+..++.|.+.|-|-....-.+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 4699999999999999988832 233444322 334566677777776654433322
Q ss_pred ---eec------CeeEEEEeCCCCcCcHHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 136 ---AWK------DYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 136 ---~~~------~~~i~liDTPG~~df~~~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
+|- -..++|||.+||+.|...+.-++ ...|...|+|-++.|+...|++++.++...++|+++|++|+|.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 221 15799999999999988876666 4579999999999999999999999999999999999999999
Q ss_pred CCCCh-hHHHHHHHHHhccceeeeeecC--CCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004311 205 MGADP-WKVLDQARSKLRHHCAAVQVPM--GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (762)
Q Consensus 205 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi--~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (762)
..++. ++.+.-+.+.+....+ -.+|+ .+-++ ++ ..+..
T Consensus 286 CPANiLqEtmKll~rllkS~gc-rK~PvlVrs~DD------Vv-~~A~N------------------------------- 326 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGC-RKLPVLVRSMDD------VV-HAAVN------------------------------- 326 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCc-ccCcEEEecccc------eE-Eeecc-------------------------------
Confidence 98774 4555555555543211 11221 11000 00 00000
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccc
Q 004311 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (762)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~ 361 (762)
+...+.+|+|.+|..+|.+++ ||.+..+.++....
T Consensus 327 -------------------------------F~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~------------- 361 (641)
T KOG0463|consen 327 -------------------------------FPSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ------------- 361 (641)
T ss_pred -------------------------------CccccccceEEeccccCCChH-HHHHHHhhcCcccc-------------
Confidence 112357999999999999997 77888788775431
Q ss_pred eeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCC----eEEEcCeEEEeecCcccccccccCCC
Q 004311 362 KVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG----KKIKVPRLVRMHSNEMEDIQEAHAGQ 436 (762)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~----~~~ki~~i~~~~g~~~~~v~~a~aGd 436 (762)
.+.+.|.-.+|..+|+.|+ |+++.|..++|+|+.+|.+...++- -...|+.|. +++.+|..+++|+
T Consensus 362 -----~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQ 432 (641)
T KOG0463|consen 362 -----LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQ 432 (641)
T ss_pred -----cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccc
Confidence 3567888999999999999 9999999999999999999987653 234566665 7888999999999
Q ss_pred EEE--Eccc---ccccCceeecCCCc
Q 004311 437 IVA--VFGV---DCASGDTFTDGSVK 457 (762)
Q Consensus 437 Iv~--i~gl---~~~~GdtL~~~~~~ 457 (762)
-.. +.++ +++.|.++.++...
T Consensus 433 tASFALKKIkr~~vRKGMVmVsp~lk 458 (641)
T KOG0463|consen 433 TASFALKKIKRKDVRKGMVMVSPKLK 458 (641)
T ss_pred hhhhHhhhcchhhhhcceEEecCCCC
Confidence 855 5666 78899988887643
No 106
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.79 E-value=2.5e-19 Score=152.23 Aligned_cols=78 Identities=49% Similarity=0.914 Sum_probs=75.8
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 744 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 744 (762)
||||.++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|++|+++++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999999877 899999999999999999999999999999999999999985
No 107
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=3.6e-18 Score=180.31 Aligned_cols=111 Identities=23% Similarity=0.147 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.|+++|++|+|||||+|+|+.....+ +... .++|..........++.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-----vs~~---------------~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-----TSPK---------------AQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-----cCCC---------------CCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999997532211 1111 455555444444556778999999998543
Q ss_pred --------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 154 --------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 154 --------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
...+..+++.+|++++|+|++.+...+ ..++..+...+.|+++|+||+|+.
T Consensus 62 ~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 62 KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223456789999999999999876554 566777777899999999999985
No 108
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=1.1e-18 Score=166.18 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=83.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+|+|... -.+.+ ++ +|+|+......+.+++..+.|+||||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~---~~~v~------------n~------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGA---KQKVG------------NW------PGTTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT---SEEEE------------ES------TTSSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCC---Cceec------------CC------CCCCeeeeeEEEEecCceEEEEECCCcccC
Confidence 6999999999999999999533 22221 11 788999999999999999999999997544
Q ss_pred H----H--HHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 154 T----V--EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 154 ~----~--~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
. . .+..++ ...|++|+|+||+. ..+...+..++.+.++|+++++||+|.
T Consensus 61 ~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 61 SSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp SSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHH
T ss_pred CCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 2 1 123444 57899999999987 466777888899999999999999996
No 109
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.78 E-value=6e-19 Score=149.80 Aligned_cols=77 Identities=18% Similarity=0.388 Sum_probs=73.7
Q ss_pred eeeEEEEEEecccchHHHHHHHhcCCceeeccccCC-CeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004311 667 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 667 EPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
|||++++|.||++++|+|+++|++|||+|.+++..+ +...|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999998765 58999999999999 599999999999999999999999986
No 110
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=6.5e-18 Score=183.45 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=88.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+..+|+++|++|+|||||+|+|+.....+ +.. ..++|.......+.+++.+++||||||
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-----vs~---------------k~~tTr~~~~~~~~~~~~qi~~~DTpG 109 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-----VTP---------------KVQTTRSIITGIITLKDTQVILYDTPG 109 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-----ccC---------------CCCCccCcEEEEEEeCCeEEEEEECCC
Confidence 345689999999999999999997432211 111 145566655566778899999999999
Q ss_pred CcCc--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 HVDF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df--------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.+. ......+++.+|++|+|+|+.++....+..++..+...+.|.++|+||+|+.
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 8542 1223346789999999999998877777777777777889999999999985
No 111
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=8e-18 Score=173.18 Aligned_cols=271 Identities=18% Similarity=0.202 Sum_probs=195.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc-ccCChhhhhhhcceeecceEEEeec-------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA-KMDSMDLEREKGITIQSAATSCAWK------------- 138 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~-~~d~~~~e~~~giTi~~~~~~~~~~------------- 138 (762)
.+++++|..|+|||||+..|.. +..++|...++ -+..++.|.+.|-|-......+.++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQ--------geLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQ--------GELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeeec--------ccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 4699999999999999988832 23444443322 2556777888777765554443322
Q ss_pred --------CeeEEEEeCCCCcCcHHHHHHHHHh--cCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004311 139 --------DYQINIIDTPGHVDFTVEVERALRV--LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 139 --------~~~i~liDTPG~~df~~~~~~al~~--aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (762)
...++|||.+||.+|...+..++.. .|.|+|||+|..|+.-.|++++..+...++|++++++|||+....
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 2679999999999999988888865 699999999999999999999999999999999999999997542
Q ss_pred -hhHHHHHHHHHhc---cceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHh
Q 004311 209 -PWKVLDQARSKLR---HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVS 284 (762)
Q Consensus 209 -~~~~~~~i~~~l~---~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~ 284 (762)
.+++++++.+.+. ....|.-+
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~V------------------------------------------------------- 344 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRV------------------------------------------------------- 344 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEe-------------------------------------------------------
Confidence 4566666666553 33222111
Q ss_pred cCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceee
Q 004311 285 EVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (762)
Q Consensus 285 ~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~ 364 (762)
-+.++-..+-+. ....+++|+|+.|..+|+|++ |+..+.+.||+-..+...
T Consensus 345 ---------------t~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e~------------ 395 (591)
T KOG1143|consen 345 ---------------TTKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEER------------ 395 (591)
T ss_pred ---------------echHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChHHH------------
Confidence 011122222222 456789999999999999998 566666777654422111
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC--C--eEEEcCeEEEeecCcccccccccCCCEEE
Q 004311 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--G--KKIKVPRLVRMHSNEMEDIQEAHAGQIVA 439 (762)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~ 439 (762)
..-...|.-..|..+|..|. |.++-|-.-+|.++.|+.+.+.+. | .+.+|..|. +.+.++..++||+-..
T Consensus 396 -~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAs 470 (591)
T KOG1143|consen 396 -IQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAAS 470 (591)
T ss_pred -HHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCcccee
Confidence 01134566678888899998 999999999999999999998764 3 345666776 6667888899999766
Q ss_pred E
Q 004311 440 V 440 (762)
Q Consensus 440 i 440 (762)
+
T Consensus 471 l 471 (591)
T KOG1143|consen 471 L 471 (591)
T ss_pred e
Confidence 5
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=6.9e-18 Score=164.60 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=83.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+++|++|+|||||+++|....... .+ .... ....|+......+.+++..+.+|||||+.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~--------~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KG--------LPPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cC--------Cccc--ccCCccccceEEEEECCEEEEEEECCCChhh
Confidence 68999999999999999996532210 00 0000 1233555555667788999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHH----HcCCCEEEEEeCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~~----~~~~p~iiviNK~D~~~~ 207 (762)
...+...++.+|++|+|+|+.+..... ....+..+. ..++|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999999999998653222 222233322 247999999999998643
No 113
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.7e-18 Score=186.89 Aligned_cols=244 Identities=22% Similarity=0.220 Sum_probs=158.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------------- 138 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 138 (762)
+-+||+||+|.|||-|++.+-.. +|..+ ...|||.+....+|...
T Consensus 476 PIcCilGHVDTGKTKlld~ir~t--------NVqeg-------------eaggitqqIgAt~fp~~ni~e~tk~~~~~~K 534 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGT--------NVQEG-------------EAGGITQQIGATYFPAENIREKTKELKKDAK 534 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcc--------ccccc-------------cccceeeeccccccchHHHHHHHHHHHhhhh
Confidence 46899999999999999999321 12222 12466666666665432
Q ss_pred ----CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHH
Q 004311 139 ----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLD 214 (762)
Q Consensus 139 ----~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~ 214 (762)
--.+.+||||||..|.....++...||.||+|||..+|+.+||.+.+.+++..+.|+||++||+|+...+...--.
T Consensus 535 ~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 535 KRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 1358899999999999999999999999999999999999999999999999999999999999986321000000
Q ss_pred HHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004311 215 QARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMF 294 (762)
Q Consensus 215 ~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 294 (762)
.+...|... ..+.+..+......++-.+++..-. .+.|
T Consensus 615 ~i~~~lkkQ-----------------------------------------~k~v~~EF~~R~~~ii~efaEQgLN-~~Ly 652 (1064)
T KOG1144|consen 615 PIVEALKKQ-----------------------------------------KKDVQNEFKERLNNIIVEFAEQGLN-AELY 652 (1064)
T ss_pred hHHHHHHHh-----------------------------------------hHHHHHHHHHHHHHHHHHHHHcccc-hhhe
Confidence 000000000 0011111111122222222211000 0112
Q ss_pred hcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeE
Q 004311 295 LSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLV 374 (762)
Q Consensus 295 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 374 (762)
.++ .-++.++-++.+||.+|.||.+||-+|+++...-... .-..-..+.
T Consensus 653 ykN---------------k~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~----------------kl~y~~ev~ 701 (1064)
T KOG1144|consen 653 YKN---------------KEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE----------------KLAYVDEVQ 701 (1064)
T ss_pred eec---------------ccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH----------------HHhhhhhee
Confidence 221 2246678899999999999999999998764322100 001223455
Q ss_pred EEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCC
Q 004311 375 ALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG 410 (762)
Q Consensus 375 ~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~ 410 (762)
+.|..+-.-++ |+-.-+-+..|.|+.||.|.+.+.+
T Consensus 702 cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~ 738 (1064)
T KOG1144|consen 702 CTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQ 738 (1064)
T ss_pred eEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCC
Confidence 66666666666 8877777889999999999987654
No 114
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1e-17 Score=161.10 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=89.0
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHH
Q 004311 76 GISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV 155 (762)
Q Consensus 76 ~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 155 (762)
+++|++|+|||||+++|+...... .. ...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-----~~---------------~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-----VE---------------DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-----ec---------------CCCCceeCceeEEEEECCeEEEEEECCCCCCchh
Confidence 589999999999999996431110 11 1246676666677778889999999999988654
Q ss_pred --------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 156 --------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 156 --------~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.+...++.+|++++|+|+.++....+..+++.+...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 61 GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 456778999999999999988888888888888888999999999999864
No 115
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=3.7e-17 Score=159.63 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=90.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|+.....+. +..+++|.......+.+++..+++|||||+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV--------------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec--------------------cCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 36799999999999999999964322110 0124566666666677788899999999985
Q ss_pred CcH-----------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 152 DFT-----------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 152 df~-----------~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
++. .....+++.+|++++|+|+..+...+...++..+...+.|+++++||+|+...
T Consensus 62 ~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 62 RKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred cccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 441 12345678999999999999998888888888888889999999999998643
No 116
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=4.5e-17 Score=158.76 Aligned_cols=114 Identities=20% Similarity=0.146 Sum_probs=82.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
..++|+++|++|+|||||+++|+... .. . +....++.+.....+.+++ ..++|||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~------~-------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 60 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FS------E-------------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTA 60 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Cc------c-------------cCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 45899999999999999999995321 10 0 0001112222333455555 578999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----HcCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~----~~~~p~iiviNK~D~~ 205 (762)
|+.+|...+...++.+|++++|+|+.+....+....|.... ..++|+++|+||+|+.
T Consensus 61 G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred ChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999998999999999999999999876655544453322 2478999999999985
No 117
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=6.4e-17 Score=158.17 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe-eEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG~~d 152 (762)
||+++|++|||||||+++|...... +.. ..+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~------v~~---------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK------IAD---------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc------ccC---------------CCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 7999999999999999999532211 111 134455555556667776 999999999742
Q ss_pred -------cHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHH-HHHH-----cCCCEEEEEeCCCCCC
Q 004311 153 -------FTVEVERALRVLDGAILVLCSVGG-VQSQSITVDR-QMRR-----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 -------f~~~~~~al~~aD~aIlVvDa~~g-v~~qt~~~~~-~~~~-----~~~p~iiviNK~D~~~ 206 (762)
+...+.+.++.+|++++|+|+.++ ...+....|. .+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 61 GASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred cccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 334455667779999999999987 3444433333 2322 3689999999999853
No 118
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.73 E-value=1.1e-17 Score=143.77 Aligned_cols=83 Identities=29% Similarity=0.472 Sum_probs=78.3
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-cccc
Q 004311 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCAS 447 (762)
Q Consensus 370 ~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~ 447 (762)
++||+++|||+.+|++ |+++|+|||||+|++||.|++.. ++.+++.+||.++|.++.++++|.|||||++.|+ ++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 4799999999999998 99999999999999999999887 6678999999999999999999999999999999 8999
Q ss_pred Cceeec
Q 004311 448 GDTFTD 453 (762)
Q Consensus 448 GdtL~~ 453 (762)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999863
No 119
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=3.3e-17 Score=184.92 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=95.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc--
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV-- 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-- 151 (762)
.|+|+|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.|++..+++|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~-----v~~---------------~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~ 60 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI-----VSD---------------TPGVTRDRKYGDAEWGGREFILIDTGGIEED 60 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce-----ecC---------------CCCcccCceEEEEEECCeEEEEEECCCCCCc
Confidence 38999999999999999996433221 111 26888888888899999999999999983
Q ss_pred ------CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 152 ------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 ------df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.+...+..+++.+|++++|+|+..+....+..+++.+.+.++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 61 DDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred chhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 3455677889999999999999999999999999999999999999999999853
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=5.6e-17 Score=157.15 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=79.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
||+++|.+|+|||||+++|......... + ....|.+ ...+.+++..+++|||||+.+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~---------------~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~ 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---I---------------VPTVGFN----VESFEKGNLSFTAFDMSGQGKY 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---e---------------cCccccc----eEEEEECCEEEEEEECCCCHhh
Confidence 5899999999999999999542110100 0 0012222 2345677889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHH------HcCCCEEEEEeCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR------RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~------~~~~p~iiviNK~D~~~~ 207 (762)
...+..+++.+|++|+|+|+.+...... ...+..+. ..++|+++|+||+|+.+.
T Consensus 59 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 59 RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999999987643322 11222221 247999999999998643
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=6.5e-17 Score=183.80 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=95.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
..+++|+|+|++|+|||||+|+|+.....+ +. ...|+|.+.....+.|++..++||||||
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~-----v~---------------~~~gvT~d~~~~~~~~~~~~~~l~DT~G 95 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV-----VE---------------DVPGVTRDRVSYDAEWNGRRFTVVDTGG 95 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc-----cc---------------CCCCCCEeeEEEEEEECCcEEEEEeCCC
Confidence 456899999999999999999996432211 11 1368888888888889999999999999
Q ss_pred CcC--------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 HVD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~d--------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.. |...+..+++.||++|+|+|+..+.......++..+...++|+++|+||+|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 96 WEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 863 44556778999999999999999988878888888888899999999999985
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=6.1e-17 Score=156.71 Aligned_cols=110 Identities=21% Similarity=0.165 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++++|||||+++|..... .++. + |+......+.+.+..+++|||||+.+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-----------------~~~~-----~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-----------------VTTI-----P--TIGFNVETVTYKNLKFQVWDLGGQTSI 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-----------------cCcC-----C--ccCcCeEEEEECCEEEEEEECCCCHHH
Confidence 489999999999999999943110 0000 1 222222345667889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHH-HH---HcCCCEEEEEeCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQ-MR---RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~-~~---~~~~p~iiviNK~D~~~~ 207 (762)
...+..+++.+|++|+|+|+.+..... ....|.. .. ..++|+++|+||+|+..+
T Consensus 57 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 998999999999999999998753222 1222222 22 247899999999998643
No 123
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=8.3e-17 Score=158.32 Aligned_cols=112 Identities=22% Similarity=0.230 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
.-.+|+++|++|+|||||+++|.... . . . .+. |+......+.+++..+++|||||+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~------~---------~---~~~----t~g~~~~~~~~~~~~l~l~D~~G~ 68 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--I------D---------T---ISP----TLGFQIKTLEYEGYKLNIWDVGGQ 68 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--C------C---------C---cCC----ccccceEEEEECCEEEEEEECCCC
Confidence 34679999999999999999995321 0 0 0 001 222222345566889999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHH----HHcCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM----RRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~----~~~~~p~iiviNK~D~~~ 206 (762)
..|...+..+++.+|++|+|+|+.+...... ...+... ...++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 69 KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 9999888999999999999999987633222 1122222 225789999999999864
No 124
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=1.6e-16 Score=169.93 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=84.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
-..|+++|++|+|||||+|+|+...-.+ +... .++|..........++.++.||||||+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~-----vs~~---------------~~tt~~~i~~i~~~~~~qi~~iDTPG~~ 64 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRHRIRGIVTEDDAQIIFVDTPGIH 64 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee-----cCCC---------------CCcccccEEEEEEcCCceEEEEECCCCC
Confidence 4579999999999999999997432211 1111 2333333333334456899999999985
Q ss_pred Cc--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 DF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df--------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+. ...+..++..+|++++|+|+..+.......++..+...++|+++|+||+|+.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 65 KPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 53 2344567889999999999998777777777877777789999999999985
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.72 E-value=1.2e-16 Score=155.97 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
|+|+++|++|+|||||+++|+...... +...+.|.......+.+++..++||||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV---------------------APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc---------------------CCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999996432100 01134455555556667789999999999853
Q ss_pred cH--------HHHHHHH-HhcCEEEEEEeCCCCcc---hhHHHHHHHHHHc--CCCEEEEEeCCCCCC
Q 004311 153 FT--------VEVERAL-RVLDGAILVLCSVGGVQ---SQSITVDRQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~--------~~~~~al-~~aD~aIlVvDa~~gv~---~qt~~~~~~~~~~--~~p~iiviNK~D~~~ 206 (762)
.. .....++ ..+|++|+|+|+.+... ......+..+... ++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 60 RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 21 1112222 33699999999987532 1222344444444 799999999999853
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=1.5e-16 Score=153.72 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++|+|||||+++++.... .. ...|+......+.+.+..+.+|||||+..|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT----------------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKI 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC----------------------CCCCcCcceEEEEECCEEEEEEECCCChhh
Confidence 489999999999999999964320 00 011222333446667889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHH----HHcCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQM----RRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~-qt~~~~~~~----~~~~~p~iiviNK~D~~~ 206 (762)
...+...++.+|++++|+|+..+... .....+... ...+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 88889999999999999999976322 222333332 235789999999999864
No 127
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=1.1e-16 Score=154.42 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHHH
Q 004311 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (762)
Q Consensus 77 iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 156 (762)
++|++|+|||||++++..... . ....+|+|+......+++++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---K------------------VGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---c------------------ccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC
Confidence 589999999999999953210 0 0012678888888888898899999999999877642
Q ss_pred ------HHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 157 ------VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 157 ------~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
...++. .+|++|+|+|+... .+....+.++.+.++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 60 SEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred ChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 344454 89999999999874 3334555667778999999999999853
No 128
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=1.6e-16 Score=154.41 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=81.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++|+|||||+++++...-.. . .....+.++......+......+++|||||+..|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP--------Q-----------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------C-----------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 68999999999999999996432100 0 0001122332222333444578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHHc--CCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~~--~~p~iiviNK~D~~ 205 (762)
...+..+++.+|++|+|+|++++...+....|. .+.+. ++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999999999998877666554443 33333 78999999999973
No 129
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=5e-16 Score=150.80 Aligned_cols=111 Identities=22% Similarity=0.225 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
-+|+++|.+|+|||||+++++...... .+ ..++.......+.+++ ..+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~----------------~~------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT----------------DY------DPTIEDSYTKQCEIDGQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc----------------cc------CCCccceEEEEEEECCEEEEEEEEECCCC
Confidence 479999999999999999997532210 00 0001111111222333 57889999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH----HcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~----~~~~p~iiviNK~D~~ 205 (762)
.+|...+...++.+|++++|+|+.+....+...-|. ... ..++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 999999999999999999999998765444333222 222 2478999999999985
No 130
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.70 E-value=6.3e-17 Score=138.86 Aligned_cols=81 Identities=36% Similarity=0.667 Sum_probs=77.3
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCce
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDT 450 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 450 (762)
|+++|||+++|++ |+++|+|||+|+|++||.|++...+++++|++|+.++|.+..++++|.||||+++.|+ ++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 5799999999998 9999999999999999999999888889999999999999999999999999999999 8999999
Q ss_pred eec
Q 004311 451 FTD 453 (762)
Q Consensus 451 L~~ 453 (762)
|+.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 973
No 131
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.5e-16 Score=187.28 Aligned_cols=117 Identities=23% Similarity=0.363 Sum_probs=97.7
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
...+++|+|+|++|+|||||+|+|+.....+ +.+ ..|+|.+......+|++..+++||||
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-----v~~---------------~pGvT~d~~~~~~~~~~~~~~liDT~ 331 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV-----VED---------------TPGVTRDRVSYDAEWAGTDFKLVDTG 331 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee-----ecC---------------CCCeeEEEEEEEEEECCEEEEEEeCC
Confidence 3457899999999999999999997432211 111 26888888888889999999999999
Q ss_pred CCcC--------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 149 GHVD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~d--------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
|+.. |...+..+++.+|++|+|+|+.++.......++..+...++|+++|+||+|+.
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9753 45566788999999999999999998888888888889999999999999974
No 132
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.69 E-value=2.1e-16 Score=153.13 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC--
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (762)
++|+++|++|+|||||+++|...... .. ....+.|... .+|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~----------------------------~~--~~~~v~~~~~--~~iDtpG~~~ 49 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL----------------------------AR--KTQAVEFNDK--GDIDTPGEYF 49 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc----------------------------Cc--cceEEEECCC--CcccCCcccc
Confidence 47999999999999999998421100 00 1111223222 37999997
Q ss_pred --cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 --~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.++..++..+++.+|++|+|+|++++....+..++.. ..++|+++++||+|+..
T Consensus 50 ~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 50 SHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 4566667778899999999999998865554433332 34789999999999854
No 133
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=3.3e-16 Score=153.44 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|+.|+|||||+++|.... . .... ..-|.++ ..+.+.+..+++|||||+.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~---------------~~~~---~t~g~~~----~~~~~~~~~~~l~Dt~G~~~ 65 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--S---------------VTTI---PTVGFNV----ETVTYKNVKFNVWDVGGQDK 65 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--C---------------cccc---CCcccce----EEEEECCEEEEEEECCCCHH
Confidence 579999999999999999995311 0 0000 0012222 23445778999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
|...+..+++.+|++|+|+|+++..... ....|.... ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9888888999999999999998753222 223333332 23689999999999853
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.69 E-value=4.6e-16 Score=153.30 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=80.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.++|+++|++|+|||||+++|+..... . ...|+......+.+++..+.+|||||+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-----------------~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-----------------H-------TSPTIGSNVEEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-----------------C-------cCCccccceEEEEECCeEEEEEECCCCH
Confidence 468999999999999999999532100 0 0113333334566778899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HH-HHHHHHH---cCCCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-IT-VDRQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~-~~~~~~~---~~~p~iiviNK~D~~~ 206 (762)
.|...+..+++.+|++|+|+|+++...... .. +...+.. .++|+++++||+|+.+
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 999999999999999999999987643221 22 2222222 3689999999999864
No 135
>PRK04213 GTP-binding protein; Provisional
Probab=99.69 E-value=4.2e-16 Score=157.19 Aligned_cols=112 Identities=20% Similarity=0.286 Sum_probs=76.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|....- .....+|+|+.... +.++ .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~---------------------~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV---------------------RVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---------------------ccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 456899999999999999999953210 01122566665433 3344 6999999995
Q ss_pred c-----------CcHHHHHH----HHHhcCEEEEEEeCCCC-----------cchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 151 V-----------DFTVEVER----ALRVLDGAILVLCSVGG-----------VQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 151 ~-----------df~~~~~~----al~~aD~aIlVvDa~~g-----------v~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
. .|...+.. .+..+|++++|+|+... ...++..++..+...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 2 33333333 34457899999999653 2234566777777789999999999998
Q ss_pred CCC
Q 004311 205 MGA 207 (762)
Q Consensus 205 ~~~ 207 (762)
...
T Consensus 143 ~~~ 145 (201)
T PRK04213 143 IKN 145 (201)
T ss_pred cCc
Confidence 643
No 136
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.69 E-value=2.9e-16 Score=152.23 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=80.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++++|||||+++|+...-.... ....|.........+......+++|||||+.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-------------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-------------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHH
Confidence 6999999999999999999743211100 000122222222233333468899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH---HcCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|+|+.++.+.+....|.. .. ..++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 9988999999999999999998776665554533 22 2478999999999984
No 137
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.69 E-value=3.1e-16 Score=156.59 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=80.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+-.+|+++|+.|+|||||+++|.... ... ...|+......+.+.+..+.+|||||+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~--~~~----------------------~~~T~~~~~~~i~~~~~~~~l~D~~G~ 73 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDR--LAQ----------------------HVPTLHPTSEELTIGNIKFKTFDLGGH 73 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------------------cCCccCcceEEEEECCEEEEEEECCCC
Confidence 34679999999999999999995321 000 011223334456677889999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHH----HHcCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~----~~~~~p~iiviNK~D~~~ 206 (762)
.+|...+..+++.+|++|+|+|+.+..... ....+... ...+.|+++++||+|+..
T Consensus 74 ~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 74 EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 999888889999999999999998653222 22222222 235699999999999864
No 138
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=6e-16 Score=150.02 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=79.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee----cCeeEEEEeCCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPG 149 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~liDTPG 149 (762)
+|+++|.+++|||||+++|....-. . +..+.+..+.....+.+ ....++||||||
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--------K-------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------C-------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc
Confidence 5999999999999999999642110 0 00111222221222222 246899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~---~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++++|+|+.+....+....|..... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999999999999999999999988766555555543332 379999999999984
No 139
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=3.4e-16 Score=152.91 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+..++|+++|++|+|||||+++|+.. .. ..+ ....++.+.....+.+.+ ..+.+|||
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~--~~------~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~ 63 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQG--LF------PPG-------------QGATIGVDFMIKTVEIKGEKIKLQIWDT 63 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC--CC------CCC-------------CCCceeeEEEEEEEEECCEEEEEEEEEC
Confidence 45689999999999999999999531 11 001 001222233333455555 46788999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH----HHHcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ----MRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~----~~~~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.++...+....|.. ....++|+++|+||+|+.
T Consensus 64 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 64 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9999999999999999999999999987755544444432 223478999999999984
No 140
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.68 E-value=1.5e-16 Score=135.74 Aligned_cols=81 Identities=75% Similarity=1.249 Sum_probs=77.2
Q ss_pred eEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEcccccccCceee
Q 004311 373 LVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFT 452 (762)
Q Consensus 373 ~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~GdtL~ 452 (762)
|+++|||+.+|++|+++|+|||+|+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+++.+||||+
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~~~~Gdtl~ 80 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGIDCASGDTFT 80 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCCcccCCEec
Confidence 57999999999889999999999999999999999988899999999999999999999999999999999999999996
Q ss_pred c
Q 004311 453 D 453 (762)
Q Consensus 453 ~ 453 (762)
+
T Consensus 81 ~ 81 (81)
T cd04091 81 D 81 (81)
T ss_pred C
Confidence 3
No 141
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.2e-16 Score=170.55 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=96.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+++|+|.||+|||||+|+|+....+| |.+- +|+|++.....+..+|+.+.++||+|..+
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AI-----VTdI---------------~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAI-----VTDI---------------AGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceE-----ecCC---------------CCCccceEEEEEEECCEEEEEEecCCccc
Confidence 589999999999999999999887766 3333 89999999999999999999999999864
Q ss_pred cHHHH--------HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 153 FTVEV--------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 153 f~~~~--------~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
=...+ ..++..||.+++|+|++++...+...++. +...++|+++|+||.|+...
T Consensus 278 t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 278 TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 33332 45678999999999999987777777766 56678999999999999643
No 142
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=5e-16 Score=154.51 Aligned_cols=113 Identities=17% Similarity=0.098 Sum_probs=81.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++-.+|+++|.+|+|||||+++|.... ... . ..|.......+.+++..+.+|||||
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~--~~~---------------~-------~~t~~~~~~~~~~~~~~~~~~D~~G 70 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR--LAQ---------------H-------QPTQHPTSEELAIGNIKFTTFDLGG 70 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCC--Ccc---------------c-------CCccccceEEEEECCEEEEEEECCC
Confidence 344789999999999999999995321 000 0 0122222344566788999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
+..+...+..+++.+|++|+|+|+++..... ....+..+. ..++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 71 HQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999988999999999999999998753222 222232222 25799999999999864
No 143
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=6.8e-16 Score=174.49 Aligned_cols=113 Identities=22% Similarity=0.310 Sum_probs=93.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
++|+|+|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.|.+..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~-----v~~---------------~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI-----VAD---------------TPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-----eCC---------------CCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 479999999999999999996432211 111 267788888888889999999999999987
Q ss_pred --------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 153 --------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 --------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+...+..+++.+|++|+|+|+.++....+..++..+.+.++|+++|+||+|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 62 DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 33345678899999999999999988888888888888999999999999964
No 144
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=9.3e-16 Score=150.33 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..++|||||+++|.... . .. ...|+......+.+.+..+++|||||+.+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~---------------~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~ 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F---------------MQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKL 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C---------------CC-------cCCcCceeEEEEEECCEEEEEEECCCChhc
Confidence 48899999999999999995321 0 00 011222223345677899999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
...+..+++.+|++|+|+|+++...... ...+..... .+.|+++|.||+|+..
T Consensus 57 ~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 57 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 9999999999999999999987532222 222232321 2479999999999853
No 145
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=8.3e-16 Score=149.13 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=80.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|++|+|||||+++|+...-.. ...+.++.......+.+++ ..+++|||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE---------------------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 69999999999999999996321100 0012223332333444444 688999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
.|.......++.+|++|+|+|+.+....+....|.. ... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999989999999999999999988766655544533 222 468999999999974
No 146
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.67 E-value=1.1e-15 Score=150.71 Aligned_cols=112 Identities=19% Similarity=0.147 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|..++|||||+++|... .. .++. + |+......+.+++..+.+|||||+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~--~~---------------~~~~-----~--t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG--ES---------------VTTI-----P--TIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CC---------------CCcC-----C--ccccceEEEEECCEEEEEEECCCCh
Confidence 357999999999999999999421 10 0110 1 2222223445678899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~-qt~~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
.|...+...++.+|++|+|+|+++.... .....|..+.. .++|+++|.||+|+.+.
T Consensus 69 ~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 69 KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999999999999999999999865322 22334443322 36899999999998643
No 147
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.67 E-value=1.1e-15 Score=148.28 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..++|||||+++|... .. ..+. + |+......+......+.+|||||+..|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~---------------~~~~-----p--t~g~~~~~~~~~~~~~~l~D~~G~~~~ 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EI---------------VTTI-----P--TIGFNVETVEYKNISFTVWDVGGQDKI 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CC---------------cccC-----C--CCCcceEEEEECCEEEEEEECCCCHhH
Confidence 5899999999999999999421 11 0110 1 111112234567789999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~-qt~~~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
...+..+++.+|++|+|+|+++.... +....|..+.. .+.|++++.||+|+..
T Consensus 58 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 58 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 99899999999999999999864322 22233333322 3589999999999854
No 148
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.67 E-value=6.9e-16 Score=150.48 Aligned_cols=114 Identities=18% Similarity=0.069 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|+++|.+|+|||||+++|+...-.. .+. ...|++..............+.+|||||+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~----------------~~~---~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~ 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS----------------AFV---STVGIDFKVKTVFRNDKRVKLQIWDTAGQER 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCC---CceeeEEEEEEEEECCEEEEEEEEECCChHH
Confidence 469999999999999999996421100 000 0012222222222222346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
|...+...++.+|++++|+|+++....+...-|. .+.. .+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 9999999999999999999998764444333332 2222 367899999999985
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=8.2e-16 Score=147.68 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=83.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++|+|||||+++|+...... ..+ .+++|.......+.+.+..+++|||||+.++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI-----VSD---------------IAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe-----ccC---------------CCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 69999999999999999996432111 011 1466666666677788889999999999876
Q ss_pred HHH--------HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 154 TVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~--------~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
... +...+..+|++++|+|+...........+.. ..+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 63 EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 432 3456789999999999998666665555554 56899999999999853
No 150
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=1.2e-15 Score=151.34 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=79.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|..++|||||+++|... .. ... . + |+......+++++..+++|||||+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~--~~---------------~~~---~--p--t~g~~~~~~~~~~~~~~i~D~~Gq~ 72 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLG--EI---------------VTT---I--P--TIGFNVETVEYKNISFTVWDVGGQD 72 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC--CC---------------ccc---c--C--CcceeEEEEEECCEEEEEEECCCCH
Confidence 357999999999999999999421 11 000 0 1 2222223456778999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
.|...+...++.+|++|+|+|+++...... ...+..... .++|++++.||+|+...
T Consensus 73 ~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 999999999999999999999987543222 222222211 36899999999998654
No 151
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.67 E-value=2.3e-16 Score=135.40 Aligned_cols=79 Identities=22% Similarity=0.496 Sum_probs=75.5
Q ss_pred EEEEEEee---cCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCc
Q 004311 375 ALAFKLEE---GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGD 449 (762)
Q Consensus 375 ~~V~k~~~---d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gd 449 (762)
++|||+.+ ||+ |+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|+ ++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 998 9999999999999999999999888889999999999999999999999999999999 899999
Q ss_pred eeec
Q 004311 450 TFTD 453 (762)
Q Consensus 450 tL~~ 453 (762)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
No 152
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=9.2e-16 Score=152.45 Aligned_cols=113 Identities=23% Similarity=0.233 Sum_probs=77.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEE-eecCeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC-AWKDYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~i~liDTPG~~d 152 (762)
.|+++|++|+|||||++++++.... ... ...|.+........ .+.+..+++|||||+..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~-----------------~~~---~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV-----------------NTV---PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK 64 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC-----------------CcC---CccccceeEEEeeccCCCceEEEEEECCCcHh
Confidence 4899999999999999999643211 000 01122222211111 23567899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-----HHHHHHHcCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-----VDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-----~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
|...+...++.+|++|+|+|+++....+... ++......++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 9888888999999999999998764332222 22223345799999999999853
No 153
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.67 E-value=2.7e-16 Score=135.03 Aligned_cols=81 Identities=46% Similarity=0.786 Sum_probs=77.2
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCce
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDT 450 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 450 (762)
|+++|||+.+|++ |+++|+|||+|+|++||.|++...++.+++.+|+.++|.+..+++++.||||+++.|+ ++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 5789999999997 9999999999999999999999988889999999999999999999999999999999 8999999
Q ss_pred eec
Q 004311 451 FTD 453 (762)
Q Consensus 451 L~~ 453 (762)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 963
No 154
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=8.6e-16 Score=148.76 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=81.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|++++|||||+++|+...-.. +..++++.+.....+.+++ ..+++|||||+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN---------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc---------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 79999999999999999996432111 1123444444444455554 578999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-H-HHc--CCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M-RRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~-~~~--~~p~iiviNK~D~~ 205 (762)
+|...+...++.+|++|+|+|+.+..+.+....|.. . ... ++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 999889999999999999999988755554443333 2 223 48999999999984
No 155
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=1.1e-15 Score=148.19 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=78.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++++|||||+++|+...-.. ......|.+.......+...+..+.+|||||+.+|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~ 63 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE-------------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-------------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 68999999999999999997432110 00111233333333344444578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88888889999999999999876443333333 33333 357899999999985
No 156
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.4e-15 Score=153.47 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=78.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee---cCeeEEEEeCCCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTPGH 150 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG~ 150 (762)
+|+++|.+|+|||||+++|+...-. .. ..+.+..+.....+.+ ....+.||||||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~--------~~-------------~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS--------QH-------------YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--------CC-------------CCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 6899999999999999999642110 00 0011111222222333 3467899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-H-------HcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R-------RYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~-~-------~~~~p~iiviNK~D~~ 205 (762)
..|...+...++.+|++|+|+|.+.....+....|... . ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 99999899999999999999999887665555444322 1 1468999999999985
No 157
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=9.3e-16 Score=148.61 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=79.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++|+|||||+++|+....... .+...|.+.......+......+.+|||||+.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-------------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-------------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 689999999999999999964321110 1111233333222223333468999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-H----HHcCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M----RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~----~~~~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|+|+.+....+....|.. + ...++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 8888889999999999999987665555444432 2 23478899999999985
No 158
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=2.5e-15 Score=146.10 Aligned_cols=112 Identities=20% Similarity=0.147 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.|+++|++|+|||||+++|+...-.. ++.+.. + +.......+......+.+|||||+.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~----------------~~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 61 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD----------------DYDPTI---E-DSYRKQIEIDGEVCLLDILDTAGQEEF 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCch---h-hhEEEEEEECCEEEEEEEEECCCcccc
Confidence 68999999999999999997432110 000000 0 000111112223367889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH----HcCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~----~~~~p~iiviNK~D~~ 205 (762)
...+...++.+|++++|+|+.+....+....|.. .. ..++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 62 SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999987654443333322 22 2368999999999985
No 159
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=2.9e-15 Score=144.82 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|.+|+|||||+++|+...-.. . +.+. .+.+. ...+..++ ..+++|||||+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~--------~--------~~~t---~~~~~---~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVD--------E--------YDPT---IEDSY---RKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcC--------C--------cCCc---chheE---EEEEEECCEEEEEEEEECCCCc
Confidence 58999999999999999997432100 0 0000 01011 11222333 568899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH----HcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~~p~iiviNK~D~~ 205 (762)
+|...+..+++.+|++++|+|..+....+....| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 61 EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999875443433322 2222 2478999999999985
No 160
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=3e-15 Score=144.75 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=82.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.|+++|.+|+|||||+++|+...-.. +... .+.+.......+...+..+.+|||||+.+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~-----~~~~---------------~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEe-----ccCC---------------CCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 579999999999999999996432110 0110 12233333333455668899999999865
Q ss_pred cHH--------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 153 FTV--------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~--------~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
... .....+..+|++++|+|+.+........+++.+...+.|.++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 432 34556889999999999998866666777777777889999999999985
No 161
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=1.4e-15 Score=148.71 Aligned_cols=113 Identities=20% Similarity=0.098 Sum_probs=79.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|.+|+|||||++++....- ... ..+.++.......+.+++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 61 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--------NPS-------------FISTIGIDFKIRTIELDGKKIKLQIWDTAG 61 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--------Ccc-------------cccCccceEEEEEEEECCEEEEEEEEeCCc
Confidence 57899999999999999999964211 000 001111122222233343 5789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-HH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-RR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~-~~---~~~p~iiviNK~D~~ 205 (762)
+.+|.......++.+|++|+|+|++++...+....|... .. .++|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 62 QERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999998888899999999999999887655544444332 22 368999999999985
No 162
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=1.4e-15 Score=148.85 Aligned_cols=115 Identities=20% Similarity=0.119 Sum_probs=81.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.-+|+++|++|+|||||+++++...-.... + ...|.+.......+......+++|||||+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~-----~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------D-----LTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------C-----CccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 358999999999999999999643211100 0 012333333333333334689999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
+|.......++.+|++|+|+|+++....+....|.. +.. .++|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 998888999999999999999997666655554443 222 368999999999985
No 163
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.6e-15 Score=163.62 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=84.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (762)
+-+..|+|||.+|||||||+++|...... +.++ .++|+......+.+ ++..+.++|||
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~---------------va~y------pfTT~~p~~G~v~~~~~~~~~i~D~P 214 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPK---------------IADY------PFTTLHPNLGVVRVDDYKSFVIADIP 214 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCc---------------cCCC------CCceeCceEEEEEeCCCcEEEEEeCC
Confidence 45678999999999999999999532111 1111 46688888888888 45789999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH-----cCCCEEEEEeCCCCCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR-----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-----~~~p~iiviNK~D~~~ 206 (762)
|..+ +...+.+.+..+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 215 Gli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 215 GLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 9853 445567778889999999999865433443334 33333 3689999999999853
No 164
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.66 E-value=1.4e-15 Score=153.17 Aligned_cols=111 Identities=22% Similarity=0.174 Sum_probs=81.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
.|+++|..|+|||||+.+++... . ..+....++.+.....+.+++ ..+++|||+|+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f-------------------~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--F-------------------CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--C-------------------CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 48899999999999999996421 1 000111222222223344554 788999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~iiviNK~D~~ 205 (762)
+|...+..+++.+|++|+|+|.++..+.+....|..... .++|+++|.||+|+.
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999999999999999999998877776665554332 368999999999984
No 165
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.66 E-value=1.5e-15 Score=148.57 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|++|+|||||+++|+...-. .. . ....|.+. ....+.+.+ ..+++|||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~--------~~-----~------~~t~~~~~--~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS--------NQ-----Y------KATIGADF--LTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------cC-----c------CCccceEE--EEEEEEECCEEEEEEEEeCCChH
Confidence 6999999999999999999643210 00 0 00011111 112233443 567899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH--HH------cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM--RR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~--~~------~~~p~iiviNK~D~~ 205 (762)
+|.......++.+|++|+|+|+.++...+....|... .. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 9999889999999999999999876544443334321 11 278999999999985
No 166
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=1.5e-15 Score=152.84 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=77.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|+.|+|||||+++|+...-. .. + ..++.......+.+++ ..++||||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--------~~-----~---------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--------PK-----Y---------RRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--------cc-----C---------CCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999743210 00 0 0011111122344445 678999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH----HcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~----~~~~p~iiviNK~D~~ 205 (762)
+|......+++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 99888888999999999999998865544333332 222 2479999999999985
No 167
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=2.1e-15 Score=147.03 Aligned_cols=113 Identities=20% Similarity=0.130 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 149 (762)
+.+|+++|.+|+|||||+++++...-.. +....++.......+..+ ...+.+|||||
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE---------------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAG 60 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 3579999999999999999996321100 001122222222233333 35789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
+.+|...+...++.+|++|+|+|+++.........|.. ... .++|++++.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 61 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred cHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 99999988999999999999999987654444333333 222 368999999999974
No 168
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.66 E-value=3.3e-15 Score=145.34 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=75.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 151 (762)
+|+++|.+|+|||||+++++.. .... . + ..++.......+..+ .+.+++|||||+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~--~~~~-----~---------~------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG--IFVE-----K---------Y------DPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCc-----c---------c------CCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 6899999999999999999632 1100 0 0 000111111223344 4567899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~----~~~~p~iiviNK~D~~ 205 (762)
.|...+...++.+|++|+|+|.......+... .+.... ..++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 61 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred cchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 99999999999999999999997765444332 223322 2468999999999984
No 169
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.9e-16 Score=159.29 Aligned_cols=244 Identities=21% Similarity=0.305 Sum_probs=173.8
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee----------
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------- 137 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---------- 137 (762)
+.+...||+-+||+.|||||++.++ +|.. +-..+.|-+|.||++...++...
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAi---SGv~---------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCpr 95 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAI---SGVH---------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPR 95 (466)
T ss_pred hheeeeeecceeccccCcceeeeee---ccce---------------EEEehhhhhcceeEEeccccceEEecCCCCCCC
Confidence 3455789999999999999999888 3321 11234566788888776655321
Q ss_pred -------c------------C--------eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHH
Q 004311 138 -------K------------D--------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMR 189 (762)
Q Consensus 138 -------~------------~--------~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-v~~qt~~~~~~~~ 189 (762)
. + +.+.|+|+|||.=+...+..+....|+|+|+|.+++. .++||-+++....
T Consensus 96 P~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaave 175 (466)
T KOG0466|consen 96 PGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVE 175 (466)
T ss_pred cchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHH
Confidence 0 0 5689999999998899999999999999999999875 6899999998888
Q ss_pred HcCCCE-EEEEeCCCCCCCCh-hHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChh
Q 004311 190 RYEVPR-LAFINKLDRMGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPAD 267 (762)
Q Consensus 190 ~~~~p~-iiviNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~ 267 (762)
-+++.. +++-||+|+...+. .+..+++.+
T Consensus 176 iM~LkhiiilQNKiDli~e~~A~eq~e~I~k------------------------------------------------- 206 (466)
T KOG0466|consen 176 IMKLKHIIILQNKIDLIKESQALEQHEQIQK------------------------------------------------- 206 (466)
T ss_pred HhhhceEEEEechhhhhhHHHHHHHHHHHHH-------------------------------------------------
Confidence 777765 67789999863221 111122211
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCc
Q 004311 268 METFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPT 347 (762)
Q Consensus 268 ~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~ 347 (762)
|+.+. . ..-.|++.+||.-+.+|+.+.++|++.+|-|.
T Consensus 207 --------------------------Fi~~t--------------~--ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 207 --------------------------FIQGT--------------V--AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred --------------------------HHhcc--------------c--cCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 11110 0 01257888899999999999999999999997
Q ss_pred ccccccccccCccceeeccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeecCCCeEEecCC-------Ce
Q 004311 348 EVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNT-------GK 411 (762)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~--------~-G~l~~~RV~sG~l~~g~~v~~~~~-------~~ 411 (762)
+|...|..+.|.+.|... . |-++-|-+..|.|+.||.+-+.+. |+
T Consensus 245 -------------------Rdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~ 305 (466)
T KOG0466|consen 245 -------------------RDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGN 305 (466)
T ss_pred -------------------cccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCc
Confidence 566777777887777542 2 568999999999999999987542 11
Q ss_pred -EEE--cCeEEEeecCcccccccccCCCEEEE
Q 004311 412 -KIK--VPRLVRMHSNEMEDIQEAHAGQIVAV 440 (762)
Q Consensus 412 -~~k--i~~i~~~~g~~~~~v~~a~aGdIv~i 440 (762)
..+ .++|..+.+ +..+.+.|.+|-.+++
T Consensus 306 ~~C~Pi~SrI~sL~A-E~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 306 IKCRPIFSRIVSLFA-EQNDLQFAVPGGLIGV 336 (466)
T ss_pred EEEeeHHHHHHHHHh-hhccceeecCCceeee
Confidence 111 223333333 3457788888887776
No 170
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.7e-15 Score=142.40 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=103.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGH 150 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 150 (762)
.-.|+++|..++||||++.++.+....+.... ... +... ..|.+|+......+.+.+ +.+.|+|||||
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-~~~--------~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEAD-ASS--------VSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQ 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecc-ccc--------cccc--cccceeEeecccceEEcCcceEEEecCCCc
Confidence 35799999999999999999977655432210 000 0000 035578888888888776 99999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcC-CCEEEEEeCCCCCCCChhHHHH
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDRMGADPWKVLD 214 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~-~p~iiviNK~D~~~~~~~~~~~ 214 (762)
.+|.-.+.-.++.++++|++||++.+.....+.++......+ +|++|++||.|+.++.+.+.+.
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~ 143 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIR 143 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHH
Confidence 999999999999999999999999998887778888877777 9999999999998776544333
No 171
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.65 E-value=1.9e-15 Score=146.97 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++++|||||+++|+...-.. . + ...-|.+.......+......+++|||||+.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~---------------~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-K---------------Y---LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-C---------------C---CCccceeEEEEEEEECCeEEEEEEEECCccHHH
Confidence 69999999999999999996432100 0 0 000122222222223334578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH--------cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--------YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--------~~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|+|.++....+....|.. +.+ .+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 9888888999999999999987655444443422 221 358899999999984
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=2e-15 Score=166.08 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=83.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (762)
+.+-.|+|+|.+|||||||+|+|..... . +.+. +++|+......+.+.+ ..+.|+|||
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~---~---vs~~---------------p~TT~~p~~Giv~~~~~~~i~~vDtP 215 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKP---K---VADY---------------PFTTLVPNLGVVRVDDERSFVVADIP 215 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcc---c---ccCC---------------CCCccCcEEEEEEeCCCcEEEEEeCC
Confidence 3456899999999999999999953221 1 1211 6778888888888875 469999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCC----CcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVG----GVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~----gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
|..+ +...+.+.+..+|++++|+|+.. ....+...+.+.+.. .++|.++|+||+|+.
T Consensus 216 Gi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 216 GLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 9854 34456778899999999999872 122223344444444 368999999999985
No 173
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.65 E-value=3.8e-15 Score=144.44 Aligned_cols=111 Identities=19% Similarity=0.113 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (762)
.+|+++|.+|+|||||+++++...-.. .+.+ ++.......+..+ ...+.||||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----------------~~~~------t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE----------------KYDP------TIEDSYRKQIEVDGQQCMLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCC------chhhhEEEEEEECCEEEEEEEEECCCc
Confidence 369999999999999999997432100 0000 0000111122233 356789999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
.+|...+...++.+|++++|+|.++.........| ..+.. .++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99998888999999999999999875444333332 33322 368999999999984
No 174
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.65 E-value=3e-15 Score=143.74 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=77.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH
Q 004311 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 154 (762)
|+++|++|+|||||+++|....-. .++. + |+......+.+++..+.+|||||+..|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~----------------~~~~-----~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS----------------EDTI-----P--TVGFNMRKVTKGNVTLKVWDLGGQPRFR 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC----------------cCcc-----C--CCCcceEEEEECCEEEEEEECCCCHhHH
Confidence 799999999999999999532110 0010 1 2222223345567889999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 155 VEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 155 ~~~~~al~~aD~aIlVvDa~~gv~~-qt~~~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
..+..+++.+|++++|+|+...... +....+..+.. .++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 59 SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999999999999999864322 22233333322 4789999999999864
No 175
>PTZ00369 Ras-like protein; Provisional
Probab=99.65 E-value=2.5e-15 Score=150.10 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|+++|.+|+|||||+++++...-.- .+.+ ..|.+. .....+......+++|||||+.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~----------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFID----------------EYDP---TIEDSY-RKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcCC---chhhEE-EEEEEECCEEEEEEEEeCCCCcc
Confidence 579999999999999999996422100 0000 011111 11122333446789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH----HcCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~----~~~~p~iiviNK~D~~ 205 (762)
|...+..+++.+|++|+|+|+++....+....|.. .. ..++|+++|.||+|+.
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999988765444443332 22 2378999999999984
No 176
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.65 E-value=1.5e-15 Score=148.39 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=78.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..|+|||||+++++...-. .. + ....|+.+.........+...+.+|||||+.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--------~~-----~------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE--------KK-----Y------VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------CC-----C------CCceeeEEEEEEEEECCEEEEEEEEECCCChhh
Confidence 6899999999999999999742110 00 0 001122222111122234478999999999998
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHHc--CCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~--~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|+|++++...+....|.. +.+. ++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 63 GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 8777788899999999999998766665544432 2222 69999999999985
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=1.2e-15 Score=151.09 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=84.1
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.++..+|+|+|++|+|||||+++|+..... .. +.. ..|.|..... +.++ ..+.+||||
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~---~~~---------------~~~~t~~~~~--~~~~-~~~~liDtp 72 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL-AR---TSK---------------TPGRTQLINF--FEVN-DGFRLVDLP 72 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc---ccC---------------CCCcceEEEE--EEeC-CcEEEEeCC
Confidence 356789999999999999999999643211 00 111 1344544332 2333 379999999
Q ss_pred CCc----------CcHHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 149 GHV----------DFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~----------df~~~~~~al~---~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
|+. +|...+..+++ .+|++++|+|+..+...++..+++.+...++|+++++||+|+..
T Consensus 73 G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 73 GYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 963 24444444554 46899999999999999999888888889999999999999853
No 178
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=2.8e-15 Score=148.24 Aligned_cols=114 Identities=13% Similarity=0.039 Sum_probs=78.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee------------c
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------K 138 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------~ 138 (762)
...+|+++|.+|+|||||++++....-. +. ....++.+.....+.+ .
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~--------~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN--------PK-------------FITTVGIDFREKRVVYNSSGPGGTLGRGQ 61 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--------cc-------------CCCccceEEEEEEEEEcCccccccccCCC
Confidence 3467999999999999999999642110 00 0011111111111111 2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH----cCCCEEEEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~----~~~p~iiviNK~D~~ 205 (762)
...+.||||||+.+|...+...++.+|++|+|+|+++....+....|.. ... .+.|+++|.||+|+.
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 3678999999999999999999999999999999987655555444432 222 367899999999984
No 179
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=4.2e-15 Score=150.33 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe-eEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTP 148 (762)
+.+.+|+|+|++|+|||||+++|+...... .+ ..+.|+......+.+.+. .+.+||||
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~------~~---------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~ 97 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA------ED---------------QLFATLDPTTRRLRLPDGREVLLTDTV 97 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc------CC---------------ccceeccceeEEEEecCCceEEEeCCC
Confidence 346799999999999999999996432110 00 023344444445555554 89999999
Q ss_pred CCcCc-HH-------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---HcCCCEEEEEeCCCCCC
Q 004311 149 GHVDF-TV-------EVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR---RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~df-~~-------~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~~p~iiviNK~D~~~ 206 (762)
|+.+. .. .....+..+|++++|+|+.++........|. ... ..++|+++|+||+|+..
T Consensus 98 G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 98 GFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 98432 11 1123456899999999999876554433332 222 23689999999999853
No 180
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=3e-15 Score=145.68 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|.+++|||||+++|+...-.. +..+.++.......+..++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 61 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL---------------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAG 61 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 3579999999999999999996321110 0012222222223333444 5789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
+..|.......++.+|++|+|+|+.+....+...-|.. +.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99998888899999999999999987555444433322 222 258999999999974
No 181
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=2.9e-15 Score=146.18 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|+.|+|||||+++|+... ... +.. ...|.++......+......+.+|||||+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 63 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMA--------------DCP---HTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC--------------CCC---cccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 579999999999999999996321 100 000 0012222222222222346789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
|...+...++.+|++|+|+|.++....+....|.. ... .+.|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 64 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999999999999999998766555544433 222 357899999999985
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=1.4e-15 Score=171.10 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=87.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.+++..+++|||||+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v~~------~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI--------------VTD------IAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------cCC------CCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 589999999999999999996432211 111 267788877778888999999999999987
Q ss_pred cHHH--------HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 153 FTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~--------~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+... ....++.+|++|+|+|++++...+....|.. ..++|+++|+||+|+.
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 6432 3346788999999999998877666666665 4578999999999985
No 183
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=2.7e-15 Score=145.42 Aligned_cols=112 Identities=22% Similarity=0.206 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++|+...-.-.. . ....+ .. .....+......+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~----~-----~~~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~ 61 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDY----E-----PTKAD----------SY-RKKVVLDGEDVQLNILDTAGQEDY 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc----C-----Ccchh----------hE-EEEEEECCEEEEEEEEECCChhhh
Confidence 6999999999999999999743211000 0 00000 00 011122334468999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHH----HcCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~----~~~~p~iiviNK~D~~ 205 (762)
......+++.+|++++|+|......... ...+.... ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 9999999999999999999876532221 12222222 2579999999999985
No 184
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.64 E-value=2.6e-15 Score=147.25 Aligned_cols=113 Identities=21% Similarity=0.206 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|++|+|||||+++++... . . .+....+........+.+.+ +.+++|||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~------~-------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F------P-------------ERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C------C-------------CccccceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 4789999999999999999996321 0 0 00111222222223344444 7899999999
Q ss_pred CcCcHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH----cCCCEEEEEeCCCCC
Q 004311 150 HVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~-~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~----~~~p~iiviNK~D~~ 205 (762)
+.+|.. .+...++.+|++|+|+|+.+....+....|.. +.. .++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999874 46777899999999999998877777766653 333 358999999999984
No 185
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.64 E-value=2.7e-15 Score=147.26 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+-.+|+++|++|+|||||+++|....- . .. ....|++ ...+.+.+..+.+|||||+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~--~---------------~~---~~t~g~~----~~~i~~~~~~~~~~D~~G~ 68 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI--S---------------HI---TPTQGFN----IKTVQSDGFKLNVWDIGGQ 68 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC--c---------------cc---CCCCCcc----eEEEEECCEEEEEEECCCC
Confidence 346799999999999999999953210 0 00 0012322 2345567889999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHH----HHHcCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQ----MRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~----~~~~~~p~iiviNK~D~~~ 206 (762)
.+|...+...++.+|++++|+|+.+..... ....+.. ....++|+++++||+|+..
T Consensus 69 ~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 999888889999999999999998642221 2222222 2335799999999999854
No 186
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=3.8e-15 Score=147.87 Aligned_cols=111 Identities=19% Similarity=0.164 Sum_probs=77.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|..++|||||++++... .. ..+ . + |+......+.+.+..+++|||||+.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~--~~---------------~~~---~--~--T~~~~~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLG--EV---------------VTT---I--P--TIGFNVETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cc---------------ccc---C--C--ccccceEEEEECCEEEEEEECCCCHh
Confidence 56999999999999999999421 11 000 0 1 22222234556789999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
|...+..+++.+|++|+|+|+++..... ....+..... .+.|+++|.||.|+...
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9999999999999999999997642211 1222332221 36899999999998643
No 187
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.64 E-value=3.7e-15 Score=145.79 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..++|||||+++|... ... . ...|+......+.+++..+++|||||+.+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~-------~---------------~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~ 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPK-------K---------------VAPTVGFTPTKLRLDKYEVCIFDLGGGANF 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCc-------c---------------ccCcccceEEEEEECCEEEEEEECCCcHHH
Confidence 4899999999999999999532 000 0 011222223456678899999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHHH----cCCCEEEEEeCCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~~p~iiviNK~D~~~~~ 208 (762)
...+..+++.+|++|+|+|+.+....+. ...+..+.. .++|+++|+||+|+.++.
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 9999999999999999999987543332 223333322 478999999999997653
No 188
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=3.7e-15 Score=160.74 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (762)
+-+-.|+|+|.+|||||||+++|......+ .++ ..+|.......+.+.+ ..+.|+|||
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~v---------------a~y------~fTT~~p~ig~v~~~~~~~~~i~D~P 213 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------ADY------PFTTLVPNLGVVRVDDGRSFVIADIP 213 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccc---------------cCC------CCCccCCEEEEEEeCCceEEEEEeCC
Confidence 456799999999999999999995321111 111 3456666666677776 899999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCCC---cchhHHHHH-HHHHH-----cCCCEEEEEeCCCCCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVGG---VQSQSITVD-RQMRR-----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~g---v~~qt~~~~-~~~~~-----~~~p~iiviNK~D~~~ 206 (762)
|+.+ +.....+.+..+|++|+|+|++.. ...+....| +++.. .++|+++|+||+|+..
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 9863 334556677789999999999864 222233333 22322 3689999999999853
No 189
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=3.8e-15 Score=142.86 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=78.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++++|||||+++|+........ ....+.+..............+++|||||+..|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY-------------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF 62 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc-------------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHH
Confidence 6999999999999999999643221100 001122222222222234578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHHc---CCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY---EVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~~---~~p~iiviNK~D~~ 205 (762)
......+++.+|++|+|+|+.+.........|. ..... ++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999999998754444433343 33333 48999999999984
No 190
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.63 E-value=5.8e-15 Score=143.98 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=79.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH
Q 004311 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 154 (762)
|+++|..|+|||||+++|...... .++. .|+......+.+++..+.+|||||+.+|.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~----------------~~~~-------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~ 58 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL----------------ESVV-------PTTGFNSVAIPTQDAIMELLEIGGSQNLR 58 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc----------------cccc-------ccCCcceEEEeeCCeEEEEEECCCCcchh
Confidence 789999999999999999632110 0000 11112224456778999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH--HcCCCEEEEEeCCCCCCC
Q 004311 155 VEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR--RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 155 ~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~--~~~~p~iiviNK~D~~~~ 207 (762)
..+..+++.+|++|+|+|+++....... ..+..+. ..++|+++|.||+|+...
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 9999999999999999999876433322 2223332 257999999999998654
No 191
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.63 E-value=4.6e-15 Score=143.53 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 152 (762)
.|+++|.+|+|||||+++|....-. .. ....|.++ ..+.+ .+..+.+|||||+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-----------------~~---~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-----------------TT---IPTVGFNV----EMLQLEKHLSLTVWDVGGQEK 56 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-----------------cc---cCccCcce----EEEEeCCceEEEEEECCCCHh
Confidence 3789999999999999999642110 00 00112221 12222 347899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
|...+...++.+|++|+|+|+.+...... ...+.... ..++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 98888889999999999999987642222 12222221 25799999999999853
No 192
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=5e-15 Score=144.59 Aligned_cols=112 Identities=21% Similarity=0.127 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|+.|+|||||+++|+...-. .. . ... ....++. ..+...+..+++|||||+.++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~---~------~~~--------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~ 60 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-EN---V------PRV--------LPEITIP---ADVTPERVPTTIVDTSSRPQD 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-cc---C------CCc--------ccceEee---eeecCCeEEEEEEeCCCchhh
Confidence 6899999999999999999753210 00 0 000 0011111 112235578999999999988
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHHH--cCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~--~~~p~iiviNK~D~~~ 206 (762)
...+...++.+|++++|+|++++...+.. ..|. .+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 88888889999999999999887666653 2343 2332 3789999999999854
No 193
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.63 E-value=7.1e-15 Score=142.07 Aligned_cols=111 Identities=20% Similarity=0.107 Sum_probs=77.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe--ecCeeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDTPG~~ 151 (762)
+|+++|.+|+|||||+++|+........ .+.++.......+. .....+++|||||+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH---------------------ESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc---------------------CCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 6999999999999999999743211100 01111111111222 233579999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-H---HcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~-~---~~~~p~iiviNK~D~~ 205 (762)
.|.......++.+|++++|+|+.++...+....|... . ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9988888889999999999999887655544444322 2 2368999999999985
No 194
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=1.4e-15 Score=145.33 Aligned_cols=112 Identities=25% Similarity=0.276 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
.+|+++|++|+|||||+++|+... .. .+..++++.......+.+++ +.+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI--------------------TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc--------------------CcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 589999999999999999996432 11 11224566666665566777 78999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.+|...+....+.++.++.++|.... ...+...++..+.. ++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 99987777777777777777766544 22333334444433 889999999999854
No 195
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.63 E-value=4.8e-15 Score=149.09 Aligned_cols=111 Identities=21% Similarity=0.178 Sum_probs=73.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+|+|.+|+|||||+++++...-.. +..+.++.......+.+++ +.++||||||+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~---------------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE---------------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc---------------------ccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 68999999999999999996421100 0011111111112234455 678899999987
Q ss_pred CcH----HH----HHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH------HcCCCEEEEEeCCCCC
Q 004311 152 DFT----VE----VERALRVLDGAILVLCSVGGVQSQSITVDR-QMR------RYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~----~~----~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~------~~~~p~iiviNK~D~~ 205 (762)
+|. .+ ...+++.+|++|+|+|+++..+.+....|. .+. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 652 12 345688999999999999876555444332 222 2468999999999984
No 196
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4.3e-15 Score=148.73 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=76.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++|+........ +.. ..+.+.......+......++||||||+.+|
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~------------~~~------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN------------FIA------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERF 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC------------cCC------cccceeEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 5899999999999999999642211100 000 0111111111222223468999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|+|+......+....|. .+.+ .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 888888999999999999998765444333332 2322 368999999999984
No 197
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.63 E-value=8.6e-15 Score=145.97 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=81.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+.+.+|+++|..++|||||+.++.... . . .+....++.+.....+..++ ..++||||
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~--~------~-------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt 62 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGS--T------E-------------SPYGYNMGIDYKTTTILLDGRRVKLQLWDT 62 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--C------C-------------CCCCCcceeEEEEEEEEECCEEEEEEEEeC
Confidence 356789999999999999999995321 0 0 00011122222222233333 78899999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
||+.+|...+...++.+|++|||+|.++..+.+....|.. +.. .++|+|+|.||+|+.
T Consensus 63 ~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 63 SGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9999999988889999999999999998766665554433 322 378999999999984
No 198
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=6.4e-15 Score=147.75 Aligned_cols=116 Identities=17% Similarity=0.298 Sum_probs=81.0
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
..+..++|+++|++|+|||||+++|+.... ... +. ...|.|..... +.+ +..+.||||
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~---~~---------------~~~~~t~~~~~--~~~-~~~l~l~Dt 77 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR---TS---------------KTPGRTQLINF--FEV-NDKLRLVDL 77 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---cc---------------CCCCceeEEEE--Eec-CCeEEEeCC
Confidence 456789999999999999999999964211 000 01 11344444332 222 468999999
Q ss_pred CCCc----------CcHHHHHHHHHhc---CEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 148 PGHV----------DFTVEVERALRVL---DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~----------df~~~~~~al~~a---D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
||+. +|...+..+++.+ +++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 9963 3333344455544 67889999988877777677777777899999999999985
No 199
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=3.6e-15 Score=162.31 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (762)
....|+++|++|+|||||+|+|+... .+ +.+ ..+.|++.....+.+ ++..+.||||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~-----v~~---------------~~~tT~d~~~~~i~~~~~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VY-----AAD---------------QLFATLDPTTRRLDLPDGGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-ee-----ecc---------------CCccccCCEEEEEEeCCCceEEEEecCc
Confidence 44689999999999999999996432 11 111 145566666666777 568999999999
Q ss_pred Cc-CcH-------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHHHHcCCCEEEEEeCCCCC
Q 004311 150 HV-DFT-------VEVERALRVLDGAILVLCSVGGVQSQSITVD----RQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~-df~-------~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~----~~~~~~~~p~iiviNK~D~~ 205 (762)
+. +.. ..+...++.||++|+|+|++++........| ..+...++|+++|+||+|+.
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 83 211 1223457889999999999887654443222 22222478999999999984
No 200
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=5.2e-15 Score=144.88 Aligned_cols=114 Identities=17% Similarity=0.077 Sum_probs=78.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 148 (762)
...+|+++|.+|+|||||+++++...- .. +..+.++.......+.++ ...+.|||||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~ 62 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF--------DT-------------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC--------Cc-------------CcCCceeeEEEEEEEEECCeEEEEEEEeCC
Confidence 346799999999999999999963211 00 000111122112223333 4578899999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-H-------HcCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R-------RYEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~-~-------~~~~p~iiviNK~D~~ 205 (762)
|+.+|...+...++.+|++|+|+|.++....+....|... . ..++|++++.||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 63 GQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred ChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 9999999999999999999999999877655544444321 1 1358999999999974
No 201
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=4.7e-15 Score=165.92 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=90.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+-.+|+++|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.++++.+++|||||+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------vs~------~pgtTrd~~~~~i~~~g~~v~l~DTaG~ 261 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI--------------VSD------IKGTTRDVVEGDFELNGILIKLLDTAGI 261 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc--------------cCC------CCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence 34589999999999999999997543322 111 1678888888888999999999999999
Q ss_pred cCcHHHH--------HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEV--------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~--------~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.++...+ ..+++.+|++|+|+|++.+...+.. .+..+...++|+++|+||+|+..
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 7665432 4577899999999999988765554 55556557899999999999853
No 202
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.62 E-value=2.1e-15 Score=143.04 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc--
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV-- 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-- 151 (762)
+|+++|++|+|||||+++|+.... . ...|+ .+.+.. .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~------------------~-------~~~t~-----~~~~~~---~~iDt~G~~~~ 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI------------------L-------YKKTQ-----AVEYND---GAIDTPGEYVE 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc------------------c-------cccce-----eEEEcC---eeecCchhhhh
Confidence 699999999999999999952210 0 00011 223333 789999983
Q ss_pred --CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 --DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 --df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+...+..+++.+|++|+|+|+.++...++...+.. .+.|+++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 333344456889999999999998887766443332 345999999999985
No 203
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.62 E-value=8.9e-15 Score=144.69 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (762)
++|+++|++|+|||||+++|+...-.. . +. ..+.......+.++ ++.+.+|||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--------~-----~~---------~t~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--------S-----YY---------PTIENTFSKIIRYKGQDYHLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--------c-----cC---------cchhhhEEEEEEECCEEEEEEEEECCCh
Confidence 689999999999999999997422110 0 00 00100011122333 367899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
.+|......++..+|++|+|+|..+....+....| ....+ .++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 99998888999999999999999987655554433 33322 467999999999974
No 204
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.62 E-value=5.4e-15 Score=145.17 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=75.1
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-CeeEEEEeCCCCcC---
Q 004311 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVD--- 152 (762)
Q Consensus 77 iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~d--- 152 (762)
|+|++|+|||||+++|....-.+ . ...++|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~------~---------------~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV------A---------------NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc------c---------------CCCceeecCcceEEEcCCCCeEEEEeccccchhhh
Confidence 58999999999999996432100 1 11455666666667777 89999999999843
Q ss_pred ----cHHHHHHHHHhcCEEEEEEeCCCCc------chhHHH-HHHHHH----------HcCCCEEEEEeCCCCCC
Q 004311 153 ----FTVEVERALRVLDGAILVLCSVGGV------QSQSIT-VDRQMR----------RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 ----f~~~~~~al~~aD~aIlVvDa~~gv------~~qt~~-~~~~~~----------~~~~p~iiviNK~D~~~ 206 (762)
+...+...++.+|++++|+|+.... ...... .+..+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2234566788899999999998762 222222 222221 14799999999999853
No 205
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=6e-15 Score=143.85 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++++... ... . +... -+.+ ......+.++...+.+|||||+.+|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~------~-----~~~t------~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRE------S-----YIPT------IEDT-YRQVISCSKNICTLQITDTTGSHQF 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------C-----cCCc------chhe-EEEEEEECCEEEEEEEEECCCCCcc
Confidence 58999999999999999996421 100 0 0000 0001 1112233345578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH------cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~------~~~p~iiviNK~D~~ 205 (762)
......+++.+|++|+|+|.++........ .+..+.. .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 63 PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 988888999999999999998876554333 3333332 468999999999984
No 206
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.62 E-value=5.3e-15 Score=149.88 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=90.1
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
+..+..+||+||.||+|||||+|.|+...-.. +.. +..+|.....+.+.-+..++.|.||
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-----vS~---------------K~~TTr~~ilgi~ts~eTQlvf~DT 127 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-----VSR---------------KVHTTRHRILGIITSGETQLVFYDT 127 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccc-----ccc---------------cccceeeeeeEEEecCceEEEEecC
Confidence 34678899999999999999999997432211 111 1445777777888888999999999
Q ss_pred CCCc------------CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc-CCCEEEEEeCCCCC
Q 004311 148 PGHV------------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~------------df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~~p~iiviNK~D~~ 205 (762)
||.+ .|......|+..||.+++|+|+...-..-.-++++.+.++ ++|-|+|+||+|..
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred CcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 9963 2344557889999999999999864444455666666554 79999999999985
No 207
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.62 E-value=7.5e-15 Score=147.97 Aligned_cols=114 Identities=21% Similarity=0.162 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
...+|+++|..|+|||||+++|+...- .+. ..+.+.++.....+.+.+ ..+.|||||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF--------SGS-------------YITTIGVDFKIRTVEINGERVKLQIWDTA 63 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--------CCC-------------cCccccceeEEEEEEECCEEEEEEEEeCC
Confidence 457899999999999999999963210 000 001111222223333333 578999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
|+..|...+...++.+|++|+|+|+++....+....|.. ... ...|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999899999999999999999988655554443433 222 358899999999985
No 208
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.62 E-value=5.5e-15 Score=143.55 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++++... ... . +.+.. + ........+......+.||||||+..|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~--~~~------~--------~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGT--FIE------K--------YDPTI---E-DFYRKEIEVDSSPSVLEILDTAGTEQF 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC------C--------CCCch---h-heEEEEEEECCEEEEEEEEECCCcccc
Confidence 69999999999999999996421 110 0 00000 0 011111222222356889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
...+..+++.+|++|+|+|.++....+....| ..+.+ .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 99889999999999999999886544443333 22322 479999999999974
No 209
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=1.1e-14 Score=145.49 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|.+|+|||||+++|+...-.. ++.+. -|... ...+..++ ..++||||||+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~----------------~~~~t---~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE----------------TYDPT---IEDSY---RKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc----------------cCCCc---hHhhE---EEEEEECCEEEEEEEEECCCch
Confidence 38999999999999999996421100 00000 00000 11122333 568899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH------cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~------~~~p~iiviNK~D~~ 205 (762)
+|......+++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9999999999999999999999876554443333 22222 368999999999984
No 210
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.62 E-value=1.6e-14 Score=141.37 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 151 (762)
+|+++|.+|+|||||+++++...-.. .+.+ ++.......+.++ ...+.+|||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~----------------~~~~------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIE----------------SYDP------TIEDSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCC------cchheEEEEEEECCEEEEEEEEeCCCcc
Confidence 59999999999999999996322100 0000 0000111222333 3678999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-----HHcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-----RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~-----~~~~~p~iiviNK~D~~ 205 (762)
+|...+...++.+|++|+|+|..+....+....|... ...++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 9999999999999999999999876544444333222 23479999999999984
No 211
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=9.1e-15 Score=163.44 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+-+..|+|||.+|||||||+++|...... +.++ +++|+......+.+++..|.|+|||
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpk---------------Iady------pfTTl~P~lGvv~~~~~~f~laDtP 214 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPK---------------IADY------PFTTLVPNLGVVQAGDTRFTVADVP 214 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCcc---------------cccc------CcccccceEEEEEECCeEEEEEECC
Confidence 345689999999999999999999532111 1122 5778888888888999999999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCCCc----chhHHH-----HHHHH----------HHcCCCEEEEEeCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVGGV----QSQSIT-----VDRQM----------RRYEVPRLAFINKL 202 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~gv----~~qt~~-----~~~~~----------~~~~~p~iiviNK~ 202 (762)
|..+ ......+.+..||++|+|||++... ..+... +.... ...++|+|+|+||+
T Consensus 215 Gliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKi 294 (500)
T PRK12296 215 GLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKI 294 (500)
T ss_pred CCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECc
Confidence 9753 2234566778899999999997421 111111 11111 12468999999999
Q ss_pred CCC
Q 004311 203 DRM 205 (762)
Q Consensus 203 D~~ 205 (762)
|++
T Consensus 295 DL~ 297 (500)
T PRK12296 295 DVP 297 (500)
T ss_pred cch
Confidence 985
No 212
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=7.1e-15 Score=149.57 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=79.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (762)
.+|+|+|++|+|||||+++|+...- .. . ....|.+. ....+.++ .+.++||||||+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~~---~---------------~~t~~~~~--~~~~~~~~~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--ED---L---------------APTIGVDF--KIKQLTVGGKRLKLTIWDTAGQ 72 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CC---c---------------CCCceeEE--EEEEEEECCEEEEEEEEECCCc
Confidence 5799999999999999999975321 00 0 00112222 22223333 368899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++|+|+|+.+....+... .|..... .++|+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999999999998866555543 3433222 357899999999985
No 213
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=1.3e-14 Score=138.83 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=82.9
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-CeeEEEEeCCCCcCcH-
Q 004311 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVDFT- 154 (762)
Q Consensus 77 iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~df~- 154 (762)
++|++|+|||||+++|....... .....+.|.......+.+. +..+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999996432211 0111344555555555554 6799999999997764
Q ss_pred ------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 155 ------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 155 ------~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
..+...++.+|++++|+|+..........+.......++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 3445688999999999999998877777666777778999999999999864
No 214
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=6.5e-15 Score=143.51 Aligned_cols=112 Identities=24% Similarity=0.280 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC-
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD- 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 152 (762)
+|+++|.+|+|||||+++++... .. .++.+. .+ +.......+..+...+++|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~--------------~~~~~t---~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~ 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI--------------GEYDPN---LE-SLYSRQVTIDGEQVSLEILDTAGQQQA 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc--------------cccCCC---hH-HhceEEEEECCEEEEEEEEECCCCccc
Confidence 48999999999999999996421 10 000000 00 11111222333445789999999985
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH-----HcCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR-----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~-----~~~~p~iiviNK~D~~ 205 (762)
+.......++.+|++|+|+|+++....+....|.. +. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 61 DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 45667889999999999999998765554443332 22 2379999999999974
No 215
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.61 E-value=7.8e-15 Score=150.03 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|..|+|||||+++++...-. .. .+...|.++.............+.+|||||+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~--------~~-----------~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~ 72 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------KK-----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCC--------Cc-----------cCCccceeEEEEEEEECCeEEEEEEEECCCc
Confidence 3468999999999999999998642110 00 0011233333222222234478999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-H--HcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R--RYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~-~--~~~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++|+|+|.++....+...-|... . ..++|+++|.||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 99998888889999999999999987766665555332 2 2478999999999974
No 216
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.6e-14 Score=140.48 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=98.0
Q ss_pred hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 67 ~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
.+.+...-||++|++|+|||||+|+|....+.. + ++. .+|.|..... |++++ .+.|+|
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-r---tSk---------------tPGrTq~iNf--f~~~~-~~~lVD 76 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-R---TSK---------------TPGRTQLINF--FEVDD-ELRLVD 76 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCccee-e---cCC---------------CCCccceeEE--EEecC-cEEEEe
Confidence 445677889999999999999999996543221 1 111 2777776654 44444 389999
Q ss_pred CCCC----------cCcHHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC-hhHH
Q 004311 147 TPGH----------VDFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD-PWKV 212 (762)
Q Consensus 147 TPG~----------~df~~~~~~al~---~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~~ 212 (762)
.||+ ..+...+..++. ...+++++||+.++....+++.++.+...++|+++++||+|+...+ ..+.
T Consensus 77 lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~ 156 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ 156 (200)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH
Confidence 9998 223344455553 3678999999999999999999999999999999999999997643 3345
Q ss_pred HHHHHHHhc
Q 004311 213 LDQARSKLR 221 (762)
Q Consensus 213 ~~~i~~~l~ 221 (762)
+..+.+.+.
T Consensus 157 l~~v~~~l~ 165 (200)
T COG0218 157 LNKVAEELK 165 (200)
T ss_pred HHHHHHHhc
Confidence 555555554
No 217
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.61 E-value=1.3e-14 Score=148.16 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---CeeEEEEeCCCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDTPGH 150 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG~ 150 (762)
+|+++|.+|+|||||+++|+...- .. +..+.++.+.....+.+. ...++||||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--------~~-------------~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--------GK-------------SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--------CC-------------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 589999999999999999963210 00 001122222222233332 468999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH------cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~------~~~p~iiviNK~D~~ 205 (762)
..|...+...++.+|++|+|+|+++....+....|.. +.+ .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 9998888899999999999999987655444443432 322 235789999999984
No 218
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.61 E-value=1.5e-14 Score=139.47 Aligned_cols=110 Identities=22% Similarity=0.223 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 151 (762)
+|+|+|++|+|||||+++|+.... ... . +..+.......+.++ .+.+++||+||+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~---------------~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEE---------------Y------DPTIEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcC---------------c------CCChhHeEEEEEEECCEEEEEEEEECCChH
Confidence 589999999999999999974321 000 0 001111112223333 4689999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHHH----cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~~p~iiviNK~D~~ 205 (762)
++.......++.+|++++|+|..+...... ...+..... .++|+++++||+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 999999999999999999999987543322 233333322 379999999999985
No 219
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.3e-14 Score=160.31 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=80.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-CeeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTP 148 (762)
+-+..|+++|.+|||||||+++|......+ .++ +++|.......+.+. +..++|+|||
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kI---------------a~y------pfTTl~PnlG~v~~~~~~~~~laD~P 214 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKI---------------ANY------HFTTLVPNLGVVETDDGRSFVMADIP 214 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCcc---------------ccC------CcceeceEEEEEEEeCCceEEEEECC
Confidence 345689999999999999999995322111 111 456777777777777 7899999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCCC---cchhH-HHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVGG---VQSQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~g---v~~qt-~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
|..+ +.....+.+..+|++|+|+|++.. ...+. ..+...+.. .++|.+||+||+|+.
T Consensus 215 Gliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 215 GLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 9853 233456667779999999999753 11222 233333333 378999999999974
No 220
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=6.7e-15 Score=150.22 Aligned_cols=115 Identities=18% Similarity=0.129 Sum_probs=81.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (762)
+...+|+++|+.++|||||+++|+...-.. +..+.+.++.....+.++ ...++||||
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~---------------------~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt 68 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL---------------------ESKSTIGVEFATRTLQVEGKTVKAQIWDT 68 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 356789999999999999999996421100 001112222222233333 368999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
||+..|...+...++.+|++|+|+|..+....+....|. .+.. .++|+++|.||+|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 999999998899999999999999998766555544443 3332 378999999999974
No 221
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.60 E-value=1.6e-14 Score=147.12 Aligned_cols=109 Identities=21% Similarity=0.138 Sum_probs=79.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+++|||||+++|+...- .+. ..|+........+..+.+.||||||+..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-----------------~~~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~ 57 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-----------------KDT-------VSTVGGAFYLKQWGPYNISIWDTAGREQF 57 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------------CCC-------CCccceEEEEEEeeEEEEEEEeCCCcccc
Confidence 589999999999999999964210 000 01222222233456788999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHH---cCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~---~~~p~iiviNK~D~~~ 206 (762)
......+++.+|++|+|+|+++......... |..+.+ .++|+|+|.||+|+..
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9988899999999999999998655554433 333332 3588999999999853
No 222
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.60 E-value=1.2e-14 Score=141.28 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=77.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe-ecCeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~d 152 (762)
+|+++|.+++|||||+++|+........ ++ ....|..+......+. .....+.+|||||+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--------------~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--------------NY---LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------cC---CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH
Confidence 6899999999999999999642111100 00 0001222211222222 2347899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
|...+...++.+|++|+|+|.++.........|.. ... .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 98888999999999999999987644443333333 232 368999999999984
No 223
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=5.7e-15 Score=145.26 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeec-ceEEEeecC--eeEEEEeCCCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS-AATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~-~~~~~~~~~--~~i~liDTPG~ 150 (762)
+|+++|..|+|||||+.+++... ... . + .+ |+.. ....+.+++ ..++||||||.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~--f~~------~--------~-----~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 60 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHS--FPD------Y--------H-----DP--TIEDAYKQQARIDNEPALLDILDTAGQ 60 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC------C--------c-----CC--cccceEEEEEEECCEEEEEEEEeCCCc
Confidence 69999999999999999996421 100 0 0 00 1100 011123333 67899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH----HcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~----~~~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++|+|+|.++....++..-|.. .. ..++|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 9999999999999999999999998877666543322 22 2468999999999974
No 224
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=1.4e-14 Score=144.51 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=77.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..|+|||||+++|+...-.. .+ ....|.+.......+......+.+|||||+.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~----------------~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~ 62 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSE----------------ST---KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF 62 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC----------------CC---CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 69999999999999999996321100 00 011222222222233333467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
...+...++.+|++|+|+|+.+.........|.. ... .++|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 63 RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 9999999999999999999987655444444432 222 357899999999985
No 225
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.59 E-value=5.1e-15 Score=127.96 Aligned_cols=81 Identities=31% Similarity=0.541 Sum_probs=74.7
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCC---eEEEcCeEEEeecCcccccccccCCCEEEEccc-cccc
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCAS 447 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~ 447 (762)
|.|+|||+.+|++ |+++|+|||+|+|++||+|++...+ +++++.+|+.++|.+..+++++.||||+++.|+ ++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 5789999999998 9999999999999999999988763 357899999999999999999999999999999 8999
Q ss_pred Cceeec
Q 004311 448 GDTFTD 453 (762)
Q Consensus 448 GdtL~~ 453 (762)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 226
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.59 E-value=1e-14 Score=143.76 Aligned_cols=115 Identities=27% Similarity=0.263 Sum_probs=86.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++-.+|+++|..|||||||+++|.. +.... ..-|+......+.++++.+++||.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~----------------------~~pT~g~~~~~i~~~~~~~~~~d~gG 67 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE----------------------TIPTIGFNIEEIKYKGYSLTIWDLGG 67 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE----------------------EEEESSEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc----------------------cCcccccccceeeeCcEEEEEEeccc
Confidence 4567899999999999999999952 21111 11144445566778999999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcc-hhHHHHHHHHHH----cCCCEEEEEeCCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQMRR----YEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~-~qt~~~~~~~~~----~~~p~iiviNK~D~~~~~ 208 (762)
+..|...+..++..+|++|+|||+.+... .+....+..+.. .++|++|++||.|+.++.
T Consensus 68 ~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 68 QESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp SGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred cccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 99999999999999999999999986432 333333333322 478999999999997653
No 227
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=2.5e-14 Score=140.38 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=75.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 151 (762)
+|+++|..++|||||+++++...-. .+..+.+........+..+ ...++||||||+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD---------------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 5899999999999999999642110 0001111112112223333 3679999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHHc----CCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY----EVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~----~~p~iiviNK~D~~ 205 (762)
+|.......++.+|++|+|+|+.+.........|.. ..+. ..|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 999999999999999999999987544444444433 3332 24589999999984
No 228
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=3.1e-14 Score=147.90 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhccee-ecceEEEeecC--eeEEEEeCCCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI-QSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
+|+++|..|+|||||+++++...-. .. +. . |+ +.....+..++ +.++||||+|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--------~~--------y~-----p--Ti~d~~~k~~~i~~~~~~l~I~Dt~G~ 58 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--------EQ--------YT-----P--TIEDFHRKLYSIRGEVYQLDILDTSGN 58 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--------CC--------CC-----C--ChhHhEEEEEEECCEEEEEEEEECCCC
Confidence 5899999999999999999632110 00 00 0 11 11112233333 78899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH------------cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------------YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~------------~~~p~iiviNK~D~~ 205 (762)
.+|......++..+|++|+|+|.++....+....| ..+.. .++|+|+++||+|+.
T Consensus 59 ~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 59 HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 99988777788999999999999876554443322 33321 368999999999984
No 229
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=1.7e-14 Score=160.45 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=80.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe-eEEEEeCCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTPGH 150 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG~ 150 (762)
++.|+++|.+|+|||||+|+|...... +.+ ..++|++.....+.+.+. .+.||||||.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~------v~~---------------~~~tTld~~~~~i~l~~~~~~~l~DTaG~ 255 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY------AAD---------------QLFATLDPTLRRIDVADVGETVLADTVGF 255 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee------ecc---------------CCCCCcCCceEEEEeCCCCeEEEEecCcc
Confidence 468999999999999999999532111 111 145677776667777664 8999999998
Q ss_pred cCc--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHH----HHHHHHHcCCCEEEEEeCCCCC
Q 004311 151 VDF--------TVEVERALRVLDGAILVLCSVGGVQSQSIT----VDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df--------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~----~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+. ...+...++.||++|+|+|+++........ ++..+...++|+++|+||+|+.
T Consensus 256 ~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 256 IRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 542 112344568899999999999875444432 3333334579999999999984
No 230
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.58 E-value=6.8e-15 Score=126.99 Aligned_cols=80 Identities=35% Similarity=0.519 Sum_probs=72.3
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc-c---c-ccc
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCA 446 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~ 446 (762)
|.|+|||+.+|++ |+++|+|||+|+|++||.|++...++++++++|+.+ +.+..+++++.||||+++. | + ++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 5799999999998 999999999999999999999988888999999955 7778999999999999985 4 5 588
Q ss_pred cCceeec
Q 004311 447 SGDTFTD 453 (762)
Q Consensus 447 ~GdtL~~ 453 (762)
+||||++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 231
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.58 E-value=2.7e-14 Score=143.01 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|.+|+|||||+++|+...-.... + ....|.+.... .+..++ ..+++|||||..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~---------------~---~~t~~~~~~~~--~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP---------------Y---QNTIGAAFVAK--RMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC---------------c---ccceeeEEEEE--EEEECCEEEEEEEEECCCch
Confidence 6999999999999999999642211000 0 00012222222 233333 567899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH--cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~--~~~p~iiviNK~D~~ 205 (762)
+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 62 RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 8888777888999999999999876544433333 23332 268999999999984
No 232
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=1.7e-14 Score=144.98 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=78.0
Q ss_pred EeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHHHH
Q 004311 78 SAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEV 157 (762)
Q Consensus 78 iG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~ 157 (762)
+|..++|||||+.+++.. .... . + ...-|++.......+..+...++||||||+.+|...+
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~~------~--------~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFEK------K--------Y---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCCC------C--------C---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 699999999999999632 1100 0 0 0012223332222222345789999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 158 ERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 158 ~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
..+++.+|++|+|+|++...+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999999999877766665654 333 478999999999974
No 233
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.57 E-value=7.6e-15 Score=150.52 Aligned_cols=160 Identities=14% Similarity=0.193 Sum_probs=117.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
..-+.|+++|++|+|||||++.|+....... .. ...|. + .....++.+++++||||
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-------------~~------~~~g~-i----~i~~~~~~~i~~vDtPg 92 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-------------IS------DIKGP-I----TVVTGKKRRLTFIECPN 92 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCc-------------cc------ccccc-E----EEEecCCceEEEEeCCc
Confidence 3457899999999999999999975421100 00 01231 1 11223678999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCC--hhHHHHHHHHHhcccee-
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGAD--PWKVLDQARSKLRHHCA- 225 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~--~~~~~~~i~~~l~~~~~- 225 (762)
+. ..+..+++.+|++++|+|+..+...++..++..+...++|.+ +|+||+|+.... .....+++++.+.....
T Consensus 93 ~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (225)
T cd01882 93 DI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ 169 (225)
T ss_pred hH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 75 567778899999999999999999999999999999999965 499999996432 34455666554442221
Q ss_pred -----------eeeecCCCcCcccceeecccceeEEeeCCCC
Q 004311 226 -----------AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNG 256 (762)
Q Consensus 226 -----------~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g 256 (762)
+.++|..++..|.+++++++.+.+.|....+
T Consensus 170 ~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~ 211 (225)
T cd01882 170 GAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHP 211 (225)
T ss_pred CCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCC
Confidence 4556888888999999999999999976544
No 234
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.57 E-value=5.5e-14 Score=138.64 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecc-eEEEeecC--eeEEEEeCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA-ATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTPG 149 (762)
.+|+++|..|+|||||+.++++..-. .++. + |+... ...+..++ +.++||||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~----------------~~~~-----p--t~~~~~~~~~~~~~~~~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP----------------SEYV-----P--TVFDNYAVTVMIGGEPYTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCC-----C--ceeeeeEEEEEECCEEEEEEEEECCC
Confidence 46999999999999999999642110 0000 1 11110 11223344 6789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (762)
+.+|......+++.+|++|+|+|.++....+... .|.. ... .++|+++|.||+|+..
T Consensus 59 ~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 59 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred ccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 9999888888999999999999998876555543 3432 222 3689999999999853
No 235
>PLN03108 Rab family protein; Provisional
Probab=99.57 E-value=4.8e-14 Score=143.35 Aligned_cols=116 Identities=18% Similarity=0.083 Sum_probs=79.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+|+|+.|+|||||+++|+...-... +. ..-|.+.......+......+++|||||+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~----------------~~---~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~ 65 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HD---LTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC----------------CC---CCccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 457899999999999999999964311100 00 00122222222222222357889999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
.+|...+...++.+|++|+|+|++.....+....|.. +.. .++|++++.||+|+.
T Consensus 66 ~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 9999888999999999999999987655554434432 222 368999999999985
No 236
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=3.7e-14 Score=141.21 Aligned_cols=109 Identities=14% Similarity=-0.029 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecc-eEEEee---cCeeEEEEeCCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA-ATSCAW---KDYQINIIDTPG 149 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~---~~~~i~liDTPG 149 (762)
+|+++|..|+|||||+++|+...-.- . + .+ |+... ...+.. ....+.+|||||
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~--------~--------~-----~~--t~~~~~~~~i~~~~~~~~~l~i~Dt~G 58 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPE--------E--------Y-----VP--TVFENYVTNIQGPNGKIIELALWDTAG 58 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCC--------C--------C-----CC--eeeeeeEEEEEecCCcEEEEEEEECCC
Confidence 69999999999999999996432100 0 0 00 11110 011222 235789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH---HcCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~---~~~~p~iiviNK~D~~ 205 (762)
+.+|......+++.+|++|+|+|+++....+... .|.... ..++|+++|.||+|+.
T Consensus 59 ~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 59 QEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred chhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 9999888888899999999999998865555442 343222 2478999999999984
No 237
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.56 E-value=8.8e-14 Score=135.17 Aligned_cols=111 Identities=20% Similarity=0.159 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|..++|||||+.+++.. .... +..+.+..+.....+..++ ..+.+|||||..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFHS-------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCCC-------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5899999999999999999632 1100 0001112222222333343 678899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
+|...+..+++.+|++++|+|..+.-..+....|.. ... .++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999888899999999999999987644444433322 222 368999999999984
No 238
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=5.2e-14 Score=137.98 Aligned_cols=116 Identities=15% Similarity=-0.032 Sum_probs=77.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+++.+|+++|..|+|||||+++++...-... ++.+ .-|..... ..+.+++ ..+++|||
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~---------------~~~~---T~~~~~~~--~~~~~~~~~~~l~~~d~ 61 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLN---------------AYSP---TIKPRYAV--NTVEVYGQEKYLILREV 61 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcc---------------cCCC---ccCcceEE--EEEEECCeEEEEEEEec
Confidence 4578999999999999999999963211000 0000 01111111 1233334 57889999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH-HcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR-RYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~-~~~~p~iiviNK~D~~ 205 (762)
+|...|......+++.+|++|+|+|+++....+.. ..+.... ..++|+++|+||+|+.
T Consensus 62 ~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 62 GEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 99999988888889999999999999876433322 2222221 2378999999999984
No 239
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.56 E-value=4.4e-14 Score=141.17 Aligned_cols=114 Identities=13% Similarity=-0.025 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
|+|+++|..|+|||||+++|+...-. . .+.+ ..+... .....+......++||||||+.+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~--------~--------~~~~---t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFP--------Q--------VYEP---TVFENY-VHDIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC--------C--------ccCC---cceeee-EEEEEECCEEEEEEEEECCCChh
Confidence 57999999999999999999642110 0 0000 000010 01112222346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHH--cCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~--~~~p~iiviNK~D~~~ 206 (762)
|......+++.+|++|+|+|.++....+... .| ..+.. .+.|+++|.||+|+..
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE 118 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 9877777889999999999998876665543 23 23332 3789999999999864
No 240
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.56 E-value=5.5e-14 Score=139.53 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|..++|||||+.+++...-. . ++. ..-|..... ..+..++ ..+.+|||+|+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~--------~--------~~~---~T~g~~~~~--~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--------E--------DYI---QTLGVNFME--KTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------C--------CCC---CccceEEEE--EEEEECCEEEEEEEEeCCCch
Confidence 5899999999999999999642110 0 000 011222221 2233333 688999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
.|...+..+++.+|++++|+|+++....+....|. .+.. ...| ++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 61 EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 99988888999999999999998865555543342 2332 2345 7889999984
No 241
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.55 E-value=6e-14 Score=137.82 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++++|||||+++++...-.-. +.+ ...........+....+.+++|||||+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~----------------~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEE----------------YVP----TVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----------------CCC----ceeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 699999999999999999964321000 000 000001111122223466889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHH-HHH--HcCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMR--RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~-~~~--~~~~p~iiviNK~D~~~ 206 (762)
.......++.+|++|+|+|..+....+... .|. .+. ..++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 888888889999999999998875544432 232 222 35799999999999853
No 242
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.55 E-value=6.7e-14 Score=140.07 Aligned_cols=114 Identities=14% Similarity=0.023 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|..++|||||+.+++...- .. . +.+ .-|.... ....+..+...+++|||||+.+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f--~~------~--------~~~---t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF--PK------E--------YIP---TVFDNYS-AQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--Cc------C--------CCC---ceEeeeE-EEEEECCEEEEEEEEECCCchh
Confidence 4699999999999999999964211 00 0 000 0011110 0111222346789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (762)
|......+++.+|++|+|+|.++....+... .|.. +.. .++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9988888999999999999998876666553 3543 222 4789999999999853
No 243
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=5.1e-14 Score=137.62 Aligned_cols=114 Identities=16% Similarity=0.062 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++|+...-.... . . ..................+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~------~---~-----------~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~ 61 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEY------V---P-----------TVFDNYSATVTVDGKQVNLGLWDTAGQEEY 61 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------C---C-----------ceeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 6899999999999999999653210000 0 0 000001111122233467999999999988
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~~~ 207 (762)
.......++.+|++++|+|+.+....+.. ..| ..... .++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 62 DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 77667777899999999999875443332 222 22222 35999999999998643
No 244
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.2e-14 Score=135.71 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=81.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-.|+++|..++|||||+-++.. +. +.+. .|..-|...-.....+.-...++.+|||+|+++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk------------~~-----F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER 66 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK------------DQ-----FHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER 66 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh------------Cc-----cccc--cccccccEEEEEEEEeCCcEEEEEEEEcCCccc
Confidence 4689999999999999999842 11 0000 122233333333333333447888999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC----EEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP----RLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p----~iiviNK~D~~~ 206 (762)
|.+....++|.|++||+|.|.++..+.+....|-.-...+.| +.+|.||+|+..
T Consensus 67 y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 67 YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 999999999999999999999988777777666544333333 346889999853
No 245
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.54 E-value=9.2e-14 Score=136.93 Aligned_cols=113 Identities=18% Similarity=0.083 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..|+|||||+.+++...- ... . . .+..+ .. .....+..+...++||||||+.+|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~---~--~---~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGE---Y--I---PTVFD----------NY-SANVMVDGKPVNLGLWDTAGQEDY 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCc---C--C---Cccee----------ee-EEEEEECCEEEEEEEEECCCchhh
Confidence 689999999999999999964210 000 0 0 00000 00 011122223467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (762)
...+..+++.+|++|+|+|.++..+.+... .|.. +.. .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 63 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888888999999999999998866555542 3433 222 3689999999999853
No 246
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.54 E-value=3.6e-14 Score=164.38 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=79.1
Q ss_pred eCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHHH--
Q 004311 79 AHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE-- 156 (762)
Q Consensus 79 G~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~-- 156 (762)
|.+|+|||||+|+|.... .. +.+ .+|+|++.....+.++++.+++|||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~---v~n---------------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~ 59 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QT---VGN---------------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL 59 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---Ce---ecC---------------CCCeEEEEEEEEEEECCeEEEEEECCCccccCccch
Confidence 789999999999995321 11 111 2788999888888999999999999999887542
Q ss_pred ---H-HHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 157 ---V-ERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 157 ---~-~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+ ...+ +.+|++++|+|+++. ........++.+.++|+++|+||+|+.
T Consensus 60 ~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 60 EEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 2 2222 368999999999873 334455566677899999999999974
No 247
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.54 E-value=9.6e-14 Score=136.86 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|..++|||||+.+++... ... ++.+ .-|.+.. ....+......+++|||+|+.+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~--f~~--------------~~~~---Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~ 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK--FPT--------------DYIP---TVFDNFS-ANVSVDGNTVNLGLWDTAGQED 61 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC--CCC--------------CCCC---cceeeeE-EEEEECCEEEEEEEEECCCCcc
Confidence 469999999999999999996321 100 0000 0111111 1112222347899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~ 205 (762)
|......+++.+|++|||+|.++....+.. ..| ..+.. .++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 62 YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 999888899999999999999987666654 333 33332 378999999999984
No 248
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.53 E-value=7.9e-14 Score=137.07 Aligned_cols=114 Identities=16% Similarity=0.028 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
++|+|+|+.++|||||+++|+...-.- . +.+ ..+... .....+..+...+.+|||||+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--------V--------YVP---TVFENY-VADIEVDGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CCC---ccccce-EEEEEECCEEEEEEEEeCCCchh
Confidence 579999999999999999996422100 0 000 001011 11112222335789999999998
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHH-HHH--cCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQ-MRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~~p~iiviNK~D~~~ 206 (762)
|......+++.+|++++|+|.......... ..|.. ... .++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 887777788999999999999865333332 22322 222 3789999999999853
No 249
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=1.4e-13 Score=140.04 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee---cCeeEEEEeCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTPG 149 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG 149 (762)
.+|+++|..|+|||||+++|+...-... ..+.++.+.....+.+ ....+++|||||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~---------------------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G 61 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV---------------------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---------------------CCceeceEEEEEEEEECCCCEEEEEEEeCCc
Confidence 5799999999999999999964211000 0011112221222222 236799999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH----cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~----~~~p~iiviNK~D~~ 205 (762)
+..|.......++.+|++|+|+|.++.........|.. +.+ .+.|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 62 QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred chhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99998888889999999999999987644444333322 222 246678999999984
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=9.5e-14 Score=156.36 Aligned_cols=109 Identities=21% Similarity=0.346 Sum_probs=87.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
..||++|.||+|||||+|+| +|.--+.| ++ +|+|++.....+.++++++.++|.||...
T Consensus 4 ~~valvGNPNvGKTtlFN~L---TG~~q~Vg------------Nw------pGvTVEkkeg~~~~~~~~i~ivDLPG~YS 62 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNAL---TGANQKVG------------NW------PGVTVEKKEGKLKYKGHEIEIVDLPGTYS 62 (653)
T ss_pred ceEEEecCCCccHHHHHHHH---hccCceec------------CC------CCeeEEEEEEEEEecCceEEEEeCCCcCC
Confidence 34999999999999999999 44433322 22 79999999999999999999999999865
Q ss_pred cHH-----H-HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 153 FTV-----E-VERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 153 f~~-----~-~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
+.. . +.+++ ...|++|-|+||+. -.....+.-|+.+.++|+++++|++|.
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhh
Confidence 522 1 24444 35799999999986 455666667888999999999999996
No 251
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.5e-13 Score=131.62 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=88.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (762)
+.+-.|.++|..|+|||.|+-++. .|...++....|-++....+++.. ..++++|||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~---------------------~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDT 65 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFK---------------------DDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDT 65 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhc---------------------cCCcchhhcceeeeEEEEEEeeecceEEEEEeeec
Confidence 456789999999999999999982 122223333434444444455554 468999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~~ 206 (762)
+|+++|...+..++|.|+++|+|.|.+..-+......|-. +.+ .++|.++|.||.|+..
T Consensus 66 AGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 66 AGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred cccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 9999999999999999999999999998777776666644 333 3689999999999853
No 252
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.52 E-value=3.3e-14 Score=124.60 Aligned_cols=80 Identities=31% Similarity=0.416 Sum_probs=72.5
Q ss_pred eEEEEEEEeecC-C-ccEEEEEEEeeeecCCCeEEecC---------CCeEEEcCeEEEeecCcccccccccCCCEEEEc
Q 004311 373 LVALAFKLEEGR-F-GQLTYLRIYEGVIRKGDFIINVN---------TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (762)
Q Consensus 373 ~~~~V~k~~~d~-~-G~l~~~RV~sG~l~~g~~v~~~~---------~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 441 (762)
++++|||+.+++ + |+++|+|||||+|+.||.|++.. ....+++.+||.++|.+..++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 6 99999999999999999999876 345688999999999999999999999999999
Q ss_pred cc-ccccCceee
Q 004311 442 GV-DCASGDTFT 452 (762)
Q Consensus 442 gl-~~~~GdtL~ 452 (762)
|+ ++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 99 788898743
No 253
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.52 E-value=2.9e-13 Score=125.31 Aligned_cols=111 Identities=26% Similarity=0.267 Sum_probs=85.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|.|+|..||||||++++|+...... + --|+......+.++++.+++||..|+..
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~~-----i-------------------~pt~gf~Iktl~~~~~~L~iwDvGGq~~ 72 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTDT-----I-------------------SPTLGFQIKTLEYKGYTLNIWDVGGQKT 72 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCccc-----c-------------------CCccceeeEEEEecceEEEEEEcCCcch
Confidence 458999999999999999996432100 0 1145555566788999999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHH----HHcCCCEEEEEeCCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~----~~~~~p~iiviNK~D~~~~ 207 (762)
+.+-|..++..+|+.|+|+|+.+....| +...+..+ +..+.|++++.||.|+.++
T Consensus 73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 9999999999999999999997764333 33333333 3358899999999999754
No 254
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.51 E-value=2.7e-13 Score=133.09 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=73.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCCcC
Q 004311 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHVD 152 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~d 152 (762)
|+|+|..|+|||||+++++...-.. . +. ..+ ...-...+..+ ...+.+|||||+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--------~-----~~--------~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--------D-----YV--------PTV-FENYSADVEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--------C-----CC--------CcE-EeeeeEEEEECCEEEEEEEEECCCCcc
Confidence 5799999999999999996422100 0 00 000 00011122223 35789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
|.......++.+|++|+|+|.++....+... .|.. ... .++|+++|.||+|+.
T Consensus 59 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 59 YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 9887888889999999999998764444332 2322 222 379999999999985
No 255
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.50 E-value=4.3e-13 Score=131.87 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+++++|..|+|||||+.+++...- .. .+.+ .+.........+......+.+|||||+.+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~---------------~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PT---------------EYVP----TAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CC---------------CCCC----ceeeeeeEEEEECCEEEEEEEEECCCChhh
Confidence 589999999999999999964211 00 0000 000111111222222367889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHH--HHHHHHHH--cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSI--TVDRQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~--~~~~~~~~--~~~p~iiviNK~D~~ 205 (762)
......+++.+|++|+|+|..+....+.. ..+..... .++|++++.||+|+.
T Consensus 62 ~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 62 DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 88877888999999999999886555443 22333333 368999999999984
No 256
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.50 E-value=1.9e-13 Score=139.95 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=70.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++++.. .... . .+ +...+.........+......+++|||||+.++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~--~~~~-----~--------~~---~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~ 63 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG--EYDD-----H--------AY---DASGDDDTYERTVSVDGEESTLVVIDHWEQEMW 63 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC--CcCc-----c--------Cc---CCCccccceEEEEEECCEEEEEEEEeCCCcchH
Confidence 5899999999999999999531 1100 0 00 000111111122223334578999999999833
Q ss_pred HHHHHHHHH-hcCEEEEEEeCCCCcchhHHHH-HHHHHH----cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALR-VLDGAILVLCSVGGVQSQSITV-DRQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~-~aD~aIlVvDa~~gv~~qt~~~-~~~~~~----~~~p~iiviNK~D~~ 205 (762)
. ....++ .+|++|+|+|+++......... +..+.. .++|+|+|.||+|+.
T Consensus 64 ~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 64 T--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred H--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 2 234556 8999999999988654443332 333333 368999999999984
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.50 E-value=1.8e-13 Score=129.08 Aligned_cols=108 Identities=23% Similarity=0.159 Sum_probs=77.6
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhccee-ecceEEEe--ecCeeEEEEeCCCCcCc
Q 004311 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI-QSAATSCA--WKDYQINIIDTPGHVDF 153 (762)
Q Consensus 77 iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~--~~~~~i~liDTPG~~df 153 (762)
++|++|+|||||+++|........ ....|. ......+. ..+..+.+|||||+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE----------------------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc----------------------ccccchhheeeEEEEECCEEEEEEEEecCChHHH
Confidence 589999999999999965332100 011111 11111222 23678999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHHcCCCEEEEEeCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-----RQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-----~~~~~~~~p~iiviNK~D~~~ 206 (762)
.......++.+|++++|+|+..+........| ......++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 88888899999999999999988766665544 333456899999999999854
No 258
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.49 E-value=4.5e-13 Score=132.90 Aligned_cols=114 Identities=12% Similarity=-0.020 Sum_probs=78.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|..++|||||+.+++...-.- ++.+. -+.... ....+......+.||||+|..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~----------------~~~pT---~~~~~~-~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPE----------------NYVPT---VFENYT-ASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCC----------------ccCCc---eeeeeE-EEEEECCEEEEEEEEECCCch
Confidence 3569999999999999999996421100 00000 010110 111122234679999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
+|......+++.+|++|+|+|.++..+.+.. ..|.. +.+ .+.|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 9988888899999999999999887666654 44533 322 268999999999984
No 259
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.49 E-value=7.1e-13 Score=128.50 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=75.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc-
Q 004311 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF- 153 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 153 (762)
|+++|++|+|||||++.|...... .. .. ...+.|.... .+.+++ .+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~---~~---------------~~~~~t~~~~--~~~~~~-~~~~~D~~g~~~~~ 59 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-AR---TS---------------KTPGKTQLIN--FFNVND-KFRLVDLPGYGYAK 59 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-ee---ec---------------CCCCcceeEE--EEEccC-eEEEecCCCccccc
Confidence 789999999999999999632111 11 00 1123333222 223333 8999999998542
Q ss_pred ---------HHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 154 ---------TVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ---------~~~~~~al~---~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
...+..++. .++++++|+|...........+++.+...+.|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 60 VSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 233333443 4578999999988777777778888888899999999999984
No 260
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=3.9e-13 Score=123.09 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=81.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.|+++|.+|+|||||+|+|+..... . +... .+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~--~---~~~~---------------~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA--K---VSNI---------------PGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS--E---ESSS---------------TTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccc--c---cccc---------------ccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 4899999999999999999742211 1 1221 456776655667788999999999998542
Q ss_pred ---------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004311 154 ---------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINK 201 (762)
Q Consensus 154 ---------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK 201 (762)
.....+.+..+|++++|+|+......+...+++.+. .+.|+++|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 61 ESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 234556668899999999988855666777777776 88999999998
No 261
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=4.5e-13 Score=132.45 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=76.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|..++|||||+.+++...-.- ++.+. -+... .....+......+++|||||+..|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~----------------~~~~t---~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~ 62 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPE----------------TYVPT---VFENY-TASFEIDEQRIELSLWDTSGSPYY 62 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCC----------------CcCCc---eEEEE-EEEEEECCEEEEEEEEECCCchhh
Confidence 59999999999999999996421100 00000 00010 011112223467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
......+++.+|++|+|+|.++..+.+.. ..|.. +.+ .+.|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 63 DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 88888889999999999999887666652 44433 322 368999999999984
No 262
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.48 E-value=1.6e-13 Score=120.54 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=67.6
Q ss_pred eEEEEEEEeecCC--ccEEEEEEEeeeecCCCeEEecCCC---------eEEEcCeEEEeecCcccccccccCCCEEEEc
Q 004311 373 LVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVNTG---------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (762)
Q Consensus 373 ~~~~V~k~~~d~~--G~l~~~RV~sG~l~~g~~v~~~~~~---------~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 441 (762)
++++|||+.++|+ |+++|+|||||+|++||.|++...+ ..++|.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 5789999999996 5699999999999999999874322 4589999999999999999999999999999
Q ss_pred cc-ccccCce
Q 004311 442 GV-DCASGDT 450 (762)
Q Consensus 442 gl-~~~~Gdt 450 (762)
|+ +..++.+
T Consensus 81 gl~~~~~~~~ 90 (94)
T cd04090 81 GIDSSIVKTA 90 (94)
T ss_pred CcchheeceE
Confidence 99 5555543
No 263
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=9.8e-13 Score=128.02 Aligned_cols=120 Identities=19% Similarity=0.081 Sum_probs=90.8
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
+.+.+-.|.++|.+++|||.++.++...+-.... -..-||......+.+......+.+|||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~-------------------~sTiGIDFk~kti~l~g~~i~lQiWDt 68 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF-------------------ISTIGIDFKIKTIELDGKKIKLQIWDT 68 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCc-------------------cceEEEEEEEEEEEeCCeEEEEEEEEc
Confidence 4567888999999999999999999543221110 011344444444445555678999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
.|+..|......+++.|++++||+|.+...+.....-|....+ .++|.++|.||+|+..
T Consensus 69 aGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 69 AGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred ccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999999999999999999999998777766666655433 3788999999999853
No 264
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=1.1e-12 Score=134.64 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-.|+++|..++|||+|+.+++...-. . ++.+ .-|.... ....+.-....++||||+|..+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~--------~--------~y~p---Ti~~~~~-~~i~~~~~~v~l~iwDTaG~e~ 73 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYP--------E--------TYVP---TVFENYT-AGLETEEQRVELSLWDTSGSPY 73 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCC--------C--------CcCC---ceeeeeE-EEEEECCEEEEEEEEeCCCchh
Confidence 46899999999999999999642110 0 0000 0011110 0112222346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
|......+++.+|++|+|+|.++....+. ...|.. +.. .+.|+++|.||+|+.
T Consensus 74 ~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 74 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99888889999999999999998766654 344433 332 368899999999984
No 265
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.47 E-value=8.4e-13 Score=136.09 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=88.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|.+|+|||||+++|.... ... . + ..+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v---~---------~------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEV---A---------A------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccc---c---------C------CCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999995321 110 0 0 1345666666777889999999999998543
Q ss_pred -------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCC------CE----------EEEEeCCCCCCCChh
Q 004311 154 -------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV------PR----------LAFINKLDRMGADPW 210 (762)
Q Consensus 154 -------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~------p~----------iiviNK~D~~~~~~~ 210 (762)
...+..+++.+|++++|+|+.+... +-..+...+...++ |. |-+.++.|+.+.+.
T Consensus 61 ~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~- 138 (233)
T cd01896 61 AADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDE- 138 (233)
T ss_pred cccchhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCH-
Confidence 3456778899999999999976432 44455566655443 11 22445777776653
Q ss_pred HHHHHHHHHhccceeee
Q 004311 211 KVLDQARSKLRHHCAAV 227 (762)
Q Consensus 211 ~~~~~i~~~l~~~~~~~ 227 (762)
+.+..+.+.++...+.+
T Consensus 139 ~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 139 KTIKAILREYKIHNADV 155 (233)
T ss_pred HHHHHHHHHhCeeeEEE
Confidence 55666777777665543
No 266
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.47 E-value=2.7e-13 Score=126.35 Aligned_cols=97 Identities=23% Similarity=0.197 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC--
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (762)
++|.+||.+++|||||+++|........+ |. .+.+. =++|||||-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K-------------------------Tq-----~i~~~---~~~IDTPGEyi 48 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK-------------------------TQ-----AIEYY---DNTIDTPGEYI 48 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc-------------------------cc-----eeEec---ccEEECChhhe
Confidence 57999999999999999999432211100 11 11222 256999994
Q ss_pred --cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 --~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
..|...+......||.+++|.||++....-. -..+..++.|+|-||||+|+.
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 5677788888889999999999997643221 233455789999999999997
No 267
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.1e-12 Score=125.02 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=85.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.-.|+++|..++|||||+.+++|..---+. ...-|+..-+....++-..+.+.||||+|++
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~Y-------------------qATIGiDFlskt~~l~d~~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTY-------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 82 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccc-------------------cceeeeEEEEEEEEEcCcEEEEEEEecccHH
Confidence 357999999999999999999875421110 0113555555555555566899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHHcC----CCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRRYE----VPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~-qt~~~~~~~~~~~----~p~iiviNK~D~~~ 206 (762)
+|...+..++|.+++||+|.|.++.-.. +|...+..+...+ +-+++|.||.|+..
T Consensus 83 RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 83 RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 9999999999999999999999876544 4444445555543 33577889999964
No 268
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.45 E-value=7.2e-13 Score=133.83 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=78.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe--ecCeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDTPG~ 150 (762)
++|+++|++|+|||||+++|....... ++. .++.......+. ..+..+.+||||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-------------t~~---------s~~~~~~~~~~~~~~~~~~~~l~D~pG~ 58 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-------------TVT---------SIEPNVATFILNSEGKGKKFRLVDVPGH 58 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-------------ccC---------cEeecceEEEeecCCCCceEEEEECCCC
Confidence 479999999999999999996431100 000 001111111111 34678999999999
Q ss_pred cCcHHHHHHHHHhc-CEEEEEEeCCCCcc--hhHHHHHHHH----H--HcCCCEEEEEeCCCCCCCChh
Q 004311 151 VDFTVEVERALRVL-DGAILVLCSVGGVQ--SQSITVDRQM----R--RYEVPRLAFINKLDRMGADPW 210 (762)
Q Consensus 151 ~df~~~~~~al~~a-D~aIlVvDa~~gv~--~qt~~~~~~~----~--~~~~p~iiviNK~D~~~~~~~ 210 (762)
.+|...+..+++.+ +++|+|+|+..... ..+...+..+ . ..++|+++++||+|+..+.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 59 PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH
Confidence 99999999999998 99999999987621 1122222211 1 148999999999999876544
No 269
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.45 E-value=1.5e-12 Score=132.80 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecc-eEEEee--cCeeEEEEeCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA-ATSCAW--KDYQINIIDTPG 149 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~--~~~~i~liDTPG 149 (762)
.+|+++|..++|||||+.+++...-. .++ .+ |+... ...+.. ....++||||+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----------------~~y-----~p--Ti~~~~~~~~~~~~~~v~L~iwDt~G 58 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP----------------GSY-----VP--TVFENYTASFEIDKRRIELNMWDTSG 58 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------Ccc-----CC--ccccceEEEEEECCEEEEEEEEeCCC
Confidence 46899999999999999999642110 000 01 11100 112233 346789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~---~~~p~iiviNK~D~~ 205 (762)
+..|......+++.+|++|+|+|.++....+.. ..|..... .++|+|+|.||+|+.
T Consensus 59 ~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 59 SSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred cHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 999998888899999999999999987655554 34543222 468999999999985
No 270
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=2.4e-12 Score=131.34 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=79.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|+.|+|||||+++++... ... . + ....|..+.........+...+++|||||+.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~--~~~------~-----~------~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE--FEK------K-----Y------IPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC--CCC------C-----C------CCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 3579999999999999998876321 110 0 0 0011222222222223345789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH---HcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~---~~~~p~iiviNK~D~~ 205 (762)
+|.......++.+|++|+|+|.++....++...|..-. ..++|++++.||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 70 KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 99888888889999999999999877766655543221 2478999999999974
No 271
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.42 E-value=1.3e-12 Score=126.70 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=69.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (762)
+|+++|..|+|||||+.+++... ... +..+. .+ .-...+..++ ..+.+|||+|..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~--------------~~~~~---~~----~~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQ--------------LESPE---GG----RFKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC--------------CCCCC---cc----ceEEEEEECCEEEEEEEEECCCCC
Confidence 69999999999999999986421 100 00000 01 0012233444 678999999997
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDR 204 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~~p~iiviNK~D~ 204 (762)
+. ..++.+|++++|+|.++....+... .+..+.. .++|+++|.||.|+
T Consensus 59 ~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 59 DA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred ch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 52 4567899999999999887777643 3344433 35799999999997
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=3.1e-12 Score=128.30 Aligned_cols=66 Identities=20% Similarity=0.131 Sum_probs=49.3
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (762)
...++||||+|+.+. ....+++.+|++|+|+|.++....+... .|.. +.. .++|+++|.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 478999999999753 2344688999999999998876655543 3533 332 3689999999999853
No 273
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=8.9e-13 Score=125.67 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=86.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
-.+|.++|-.+|||||++..|- .+.+.. .--|+......+++++..+++||..|+.
T Consensus 17 e~~IlmlGLD~AGKTTILykLk--~~E~vt----------------------tvPTiGfnVE~v~ykn~~f~vWDvGGq~ 72 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLK--LGEIVT----------------------TVPTIGFNVETVEYKNISFTVWDVGGQE 72 (181)
T ss_pred eEEEEEEeccCCCceeeeEeec--cCCccc----------------------CCCccccceeEEEEcceEEEEEecCCCc
Confidence 3569999999999999998882 111110 0127777888899999999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCc--chhHHHHHHHHHH---cCCCEEEEEeCCCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGV--QSQSITVDRQMRR---YEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv--~~qt~~~~~~~~~---~~~p~iiviNK~D~~~~~ 208 (762)
.+...+..+++..+++|+|||+++.. ...-.++.+.+.. .+.|++++.||.|++++-
T Consensus 73 k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 73 KLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred ccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 99999999999999999999998753 2222233333332 378999999999998764
No 274
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.40 E-value=2.6e-12 Score=131.44 Aligned_cols=116 Identities=18% Similarity=0.303 Sum_probs=81.5
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCee-EEEEeC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQ-INIIDT 147 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~-i~liDT 147 (762)
.+.|-+|++||-||||||||+++|.. +..+.+ +| .-+|+......+.++++. +.+-|.
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~---AKpkVa------------~Y------aFTTL~P~iG~v~yddf~q~tVADi 251 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSR---AKPKVA------------HY------AFTTLRPHIGTVNYDDFSQITVADI 251 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhc---cCCccc------------cc------ceeeeccccceeeccccceeEeccC
Confidence 35577999999999999999999943 222221 11 234777777777777755 999999
Q ss_pred CCCcC-------cHHHHHHHHHhcCEEEEEEeCCCC---c-chhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 148 PGHVD-------FTVEVERALRVLDGAILVLCSVGG---V-QSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~d-------f~~~~~~al~~aD~aIlVvDa~~g---v-~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
||.+. .-....+=+..|+..++|||...+ - ..|-..+|..+.. ...|.+||+||+|.+
T Consensus 252 PGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 252 PGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred ccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 99853 233445666778999999999876 1 2233334444433 357899999999985
No 275
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.40 E-value=5.4e-12 Score=126.85 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=85.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+||+++|++|+|||||+|+|+........ ...+|.|.........+++..+++|||||..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-------------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d 61 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-------------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFD 61 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-------------------cCCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence 58999999999999999999865432211 01246777777778888999999999999876
Q ss_pred cH-------HHHHHHH----HhcCEEEEEEeCCCCcchhHHHHHHHHHHc-C----CCEEEEEeCCCCCC
Q 004311 153 FT-------VEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRRY-E----VPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~-------~~~~~al----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~----~p~iiviNK~D~~~ 206 (762)
+. .++.+.+ ..+|++|+|+|+.. ........++.+.+. + .++++++|++|...
T Consensus 62 ~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 62 TSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred ccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 52 2233332 35799999999987 777777777776553 3 57899999999753
No 276
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.39 E-value=4.5e-12 Score=126.39 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeec-ceEEEeecC--eeEEEEeCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS-AATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~-~~~~~~~~~--~~i~liDTPG 149 (762)
.+|+++|..|+|||||+++|+... ... . ... |+.. -...+.+++ ..+++|||||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~------~-------------~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g 58 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPE------E-------------YHP--TVFENYVTDCRVDGKPVQLALWDTAG 58 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc------c-------------cCC--cccceEEEEEEECCEEEEEEEEECCC
Confidence 479999999999999999996311 100 0 000 1100 011222333 4688999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
+.+|.......++.+|++|+|+|.+.....+... .|.. +.. .++|+++|.||+|+.
T Consensus 59 ~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 59 QEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred ChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 9887655556778999999999997654444332 2322 222 268999999999984
No 277
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.38 E-value=5.7e-12 Score=122.09 Aligned_cols=113 Identities=21% Similarity=0.170 Sum_probs=78.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.|+++|..++|||||+++|....- .. ++. ...|.........+......+.||||+|+.+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~---------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 61 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PE---------------NYI---PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF 61 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TS---------------SSE---TTSSEEEEEEEEEETTEEEEEEEEEETTSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cc---------------ccc---cccccccccccccccccccccccccccccccc
Confidence 489999999999999999964211 00 000 01122333333333334467999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCEEEEEeCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~iiviNK~D~~ 205 (762)
.......++.+|++|+|.|.++.........|..... .+.|++++.||.|+.
T Consensus 62 ~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 62 DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 8888888999999999999988766555555544321 247889999999974
No 278
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.8e-12 Score=137.32 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=91.8
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+.-.+|+|+|+||+|||||+|+|......| |.+. .|+|.++....++.+|+.+.|+||+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI-----VSpv---------------~GTTRDaiea~v~~~G~~v~L~DTA 324 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI-----VSPV---------------PGTTRDAIEAQVTVNGVPVRLSDTA 324 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE-----eCCC---------------CCcchhhheeEeecCCeEEEEEecc
Confidence 3455799999999999999999998776666 3333 8999999999999999999999999
Q ss_pred CCcCc---------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004311 149 GHVDF---------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 149 G~~df---------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~ 202 (762)
|..+= ......++..||++++|+|+.++...+...+.+.+...+.-+.+.+|||
T Consensus 325 GiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 325 GIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred ccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 98651 1223567889999999999999888888888887777655555555554
No 279
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.36 E-value=3.4e-12 Score=115.81 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=81.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.+.++|--++|||||+|.... ++ ++. .-+-|+....-.+.-++..+.+||.||+..|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~------------g~-----~~e------dmiptvGfnmrk~tkgnvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIAR------------GQ-----YLE------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 78 (186)
T ss_pred eEEEEeeccCCcceEEEEEee------------cc-----chh------hhcccccceeEEeccCceEEEEEecCCCccH
Confidence 488999999999999987621 11 000 0233444444555566789999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcc-hhHHH----HHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQ-SQSIT----VDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~-~qt~~----~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
...+.++.|.+|+++++|||.+... ...+. ++....-.++|+++..||.|++++
T Consensus 79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 9999999999999999999987422 11222 222223358999999999999876
No 280
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.36 E-value=3e-12 Score=117.83 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=86.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhh--hcceeecceEEEeecCeeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~--~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
...|.+||..|+|||+|+-++...+ .+.+.. -|+..+.....+.-+..++.||||+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~---------------------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG 69 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT---------------------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG 69 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc---------------------cCccCCceeeeeEEEEEEEEcCceEEEEEEeccc
Confidence 4578999999999999999884321 111111 35555666666666778999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
+++|...+.+++|.|.++|+|.|.+...+.....+|..-.. .++-.++|.||+|+.
T Consensus 70 qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 70 QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred hHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 99999999999999999999999998776666677755332 244458999999974
No 281
>PRK09866 hypothetical protein; Provisional
Probab=99.35 E-value=1.7e-11 Score=137.63 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=56.9
Q ss_pred eeEEEEeCCCCcC-----cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcC--CCEEEEEeCCCCC
Q 004311 140 YQINIIDTPGHVD-----FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE--VPRLAFINKLDRM 205 (762)
Q Consensus 140 ~~i~liDTPG~~d-----f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~--~p~iiviNK~D~~ 205 (762)
.++.|+||||... +...+..++..+|.+++|+|+..+.......+.+.+.+.+ .|+++++||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 6899999999843 4456778999999999999999988888888888888877 4999999999984
No 282
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.35 E-value=4.7e-12 Score=119.61 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
..+..|.|+|.+|+|||+|.+++.+..-.- . ....-|.........+.-.-..+++|||+|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~--------q-----------ykaTIgadFltKev~Vd~~~vtlQiWDTAG 67 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ--------Q-----------YKATIGADFLTKEVQVDDRSVTLQIWDTAG 67 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH--------H-----------hccccchhheeeEEEEcCeEEEEEEEeccc
Confidence 346789999999999999999996432100 0 000012222222333333346789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH--H------cCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR--R------YEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~--~------~~~p~iiviNK~D~~~ 206 (762)
+++|.+.-...+|.+|.+++|.|....-...+...|+.-. . ..-|.||+.||+|..+
T Consensus 68 QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 68 QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999998888899999999999999888888888876532 2 2468999999999864
No 283
>COG2262 HflX GTPases [General function prediction only]
Probab=99.33 E-value=8.2e-12 Score=133.02 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=78.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-CeeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTP 148 (762)
..+..|+++|..|||||||+|+|. +.... +.+. --.|.+...-.+.+. +..+.|-||-
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~---~~d~---------------LFATLdpttR~~~l~~g~~vlLtDTV 248 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALT---GADVY---VADQ---------------LFATLDPTTRRIELGDGRKVLLTDTV 248 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHh---ccCee---cccc---------------ccccccCceeEEEeCCCceEEEecCc
Confidence 467899999999999999999994 22111 1111 223666666666666 6899999999
Q ss_pred CCcCcH--------HHHHHHHHhcCEEEEEEeCCCCcc-hhHHHHHHHHHH---cCCCEEEEEeCCCCC
Q 004311 149 GHVDFT--------VEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~--------~~~~~al~~aD~aIlVvDa~~gv~-~qt~~~~~~~~~---~~~p~iiviNK~D~~ 205 (762)
|+++-. ..+......||..+.|||++++.. .+-..+...+.+ ..+|+|+|+||+|+.
T Consensus 249 GFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 249 GFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred cCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 986421 223344567999999999998732 233333333333 568999999999975
No 284
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.6e-11 Score=122.69 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=82.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+..-||.|+|..|+|||||+|+|...... ....+..+ +| -.......+++..++||||||
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~--~v~~vg~~------t~------------~~~~~~~~~~~~~l~lwDtPG 96 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVK--EVSKVGVG------TD------------ITTRLRLSYDGENLVLWDTPG 96 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCc--eeeecccC------CC------------chhhHHhhccccceEEecCCC
Confidence 45679999999999999999999742221 11111111 00 000111234567899999999
Q ss_pred CcC-------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCC
Q 004311 150 HVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~d-------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~iiviNK~D~~ 205 (762)
..| +.......+...|.+++++|+.+..-..+...|+..... +.|+++++|..|+.
T Consensus 97 ~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 97 LGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred cccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 976 566678888999999999999988777777788776543 47899999999984
No 285
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=126.47 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=93.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-.|++||.|++|||||++.| ++.-+..+ |+ .-+|......-++|++.+++++|+||...
T Consensus 64 a~v~lVGfPsvGKStLL~~L---Tnt~seva------------~y------~FTTl~~VPG~l~Y~ga~IQild~Pgii~ 122 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKL---TNTKSEVA------------DY------PFTTLEPVPGMLEYKGAQIQLLDLPGIIE 122 (365)
T ss_pred eEEEEEcCCCccHHHHHHHH---hCCCcccc------------cc------CceecccccceEeecCceEEEEcCccccc
Confidence 46999999999999999999 44333321 11 23478888888999999999999999853
Q ss_pred c-------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCC-----CEEEEEeCCCCCCC----------Chh
Q 004311 153 F-------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-----PRLAFINKLDRMGA----------DPW 210 (762)
Q Consensus 153 f-------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~-----p~iiviNK~D~~~~----------~~~ 210 (762)
= ..++...+|.||.+|+|+|+.+.... -..+.+.+...|+ |.-+.+.|-+.-+- --.
T Consensus 123 gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~ 201 (365)
T COG1163 123 GASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDE 201 (365)
T ss_pred CcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCH
Confidence 2 24678889999999999999876432 3345555555543 44555555443221 113
Q ss_pred HHHHHHHHHhccceeeeee
Q 004311 211 KVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 211 ~~~~~i~~~l~~~~~~~~~ 229 (762)
+.+..+.+.++.+.+.+.+
T Consensus 202 ~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 202 DTVRAILREYRIHNADVLI 220 (365)
T ss_pred HHHHHHHHHhCcccceEEE
Confidence 5677777778877665543
No 286
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.1e-11 Score=117.42 Aligned_cols=115 Identities=21% Similarity=0.120 Sum_probs=82.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.-.+.++|..++|||.|+-++..+.-.. ..| -.-|+........+.-+..++++|||.||+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~--------------~hd-----~TiGvefg~r~~~id~k~IKlqiwDtaGqe 66 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQP--------------VHD-----LTIGVEFGARMVTIDGKQIKLQIWDTAGQE 66 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccc--------------ccc-----ceeeeeeceeEEEEcCceEEEEEEecCCcH
Confidence 3468899999999999999885321110 001 012333333344444456789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
.|.+.+..+++.+-+||||.|.+...+......|-. ++. .++-++++.||+|+.
T Consensus 67 ~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 67 SFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred HHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 999999999999999999999988766666555533 333 356678889999985
No 287
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.31 E-value=1.2e-11 Score=120.73 Aligned_cols=115 Identities=22% Similarity=0.221 Sum_probs=69.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee---cCeeEEEEeCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTP 148 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTP 148 (762)
-+.|.|+|+.|+|||+|+..|.+....- +++ ++ .....+.. .+..+.+||+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-------------T~t-----------S~-e~n~~~~~~~~~~~~~~lvD~P 57 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-------------TVT-----------SM-ENNIAYNVNNSKGKKLRLVDIP 57 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS----------------B--------------S-SEEEECCGSSTCGTCECEEEET
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC-------------eec-----------cc-cCCceEEeecCCCCEEEEEECC
Confidence 4689999999999999999997641110 000 11 11111111 34689999999
Q ss_pred CCcCcHHHHHHH---HHhcCEEEEEEeCCCCcchhHHHHHHHHH---------HcCCCEEEEEeCCCCCCCChhHH
Q 004311 149 GHVDFTVEVERA---LRVLDGAILVLCSVGGVQSQSITVDRQMR---------RYEVPRLAFINKLDRMGADPWKV 212 (762)
Q Consensus 149 G~~df~~~~~~a---l~~aD~aIlVvDa~~gv~~qt~~~~~~~~---------~~~~p~iiviNK~D~~~~~~~~~ 212 (762)
||.++....... +..+.++|+|||+.. ...+-..+.+++. ..++|++|+.||.|+..+.+...
T Consensus 58 GH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~ 132 (181)
T PF09439_consen 58 GHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKK 132 (181)
T ss_dssp T-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHH
T ss_pred CcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHH
Confidence 999998877665 889999999999974 2222222222221 24788999999999988765433
No 288
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.2e-11 Score=109.46 Aligned_cols=116 Identities=17% Similarity=0.029 Sum_probs=85.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.-.+.|+|...+|||+++-+.+..+-.+.- + +.-|+..+.....-.-+..++++|||+|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~af------------v-------sTvGidFKvKTvyr~~kRiklQiwDTagqE 81 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAF------------V-------STVGIDFKVKTVYRSDKRIKLQIWDTAGQE 81 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccce------------e-------eeeeeeEEEeEeeecccEEEEEEEecccch
Confidence 347899999999999999888543322111 0 013455444433333345789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
.+...+..++|.+++.||+.|.+.........-|--.. ..+.|+|+|.||+|+..
T Consensus 82 ryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 82 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred hhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 99999999999999999999998876665555554333 35899999999999854
No 289
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.29 E-value=1.7e-11 Score=123.33 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHV 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 151 (762)
.+|+++|.+|+|||||+|+|+...... .+ ....+. ..+|.... .+.. ....+.+|||||..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-------~~---~~~~~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~ 63 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-------EG---AAPTGV------VETTMKRT--PYPHPKFPNVTLWDLPGIG 63 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-------CC---ccccCc------cccccCce--eeecCCCCCceEEeCCCCC
Confidence 369999999999999999996422100 00 000000 01121111 1111 13478999999986
Q ss_pred CcHHHHHH-----HHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVER-----ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~-----al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+....... .+..+|++++|.| ..........++.+...+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 64 STAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred cccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 54222222 2456788888754 3466667777888888899999999999984
No 290
>PRK13768 GTPase; Provisional
Probab=99.28 E-value=3.9e-11 Score=125.18 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=49.2
Q ss_pred CeeEEEEeCCCCcCcH---HHH---HHHHHh--cCEEEEEEeCCCCcchhHHHHHHHH-----HHcCCCEEEEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFT---VEV---ERALRV--LDGAILVLCSVGGVQSQSITVDRQM-----RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~---~~~---~~al~~--aD~aIlVvDa~~gv~~qt~~~~~~~-----~~~~~p~iiviNK~D~~ 205 (762)
+..+.+|||||+.++. ... .+.+.. +|++++|+|+..+....+......+ ...++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3579999999987643 233 223333 8999999999887766654443332 25789999999999986
Q ss_pred CC
Q 004311 206 GA 207 (762)
Q Consensus 206 ~~ 207 (762)
..
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 54
No 291
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=5.3e-11 Score=123.17 Aligned_cols=114 Identities=21% Similarity=0.261 Sum_probs=80.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
..++|.|.|+||+|||||++++. ++-... +.+ +-+|-....++++.+..++++|||||.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT---~AkpEv---------A~Y---------PFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT---TAKPEV---------APY---------PFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh---cCCCcc---------CCC---------CccccceeEeeeecCCceEEEecCCcc
Confidence 57899999999999999999994 322211 111 334666677888999999999999998
Q ss_pred cCc--------HHHHHHHHHh-cCEEEEEEeCCCC--c--chhHHHHHHHHH-HcCCCEEEEEeCCCCCC
Q 004311 151 VDF--------TVEVERALRV-LDGAILVLCSVGG--V--QSQSITVDRQMR-RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df--------~~~~~~al~~-aD~aIlVvDa~~g--v--~~qt~~~~~~~~-~~~~p~iiviNK~D~~~ 206 (762)
-|= -.+...||+. .+++++++|+++. . ..| ..+|+... .++.|+++|+||+|...
T Consensus 226 LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 226 LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcCCCeEEEEecccccc
Confidence 542 2334567765 5677889999753 2 233 34455544 35689999999999864
No 292
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.25 E-value=7e-11 Score=118.88 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=79.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe-----ecCeeEEEEeCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-----WKDYQINIIDTP 148 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~liDTP 148 (762)
+|+++|..++|||||+++++...-. .. ....-|.++......+. -..+.++||||+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~-----------------~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDta 62 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL-----------------GR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVG 62 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-----------------CC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecC
Confidence 5899999999999999999642110 00 00011222222222221 123679999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH----------------------cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----------------------YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~----------------------~~~p~iiviNK~D~~ 205 (762)
|+.+|.......++.+|++|+|+|.++....+....|.. +.. .++|+++|.||+|+.
T Consensus 63 G~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 63 GSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred CchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999888899999999999999998877666665533 221 268999999999985
Q ss_pred C
Q 004311 206 G 206 (762)
Q Consensus 206 ~ 206 (762)
.
T Consensus 143 ~ 143 (202)
T cd04102 143 P 143 (202)
T ss_pred h
Confidence 4
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.25 E-value=5.5e-11 Score=127.46 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCcc---ccccCChhhh---hhhcceeecceEE------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMDLE---REKGITIQSAATS------ 134 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~---~~~~d~~~~e---~~~giTi~~~~~~------ 134 (762)
.+...|+|.|.+|+|||||+++|.... |.....-.++..... +...|....+ ...+.-+.+....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 345679999999999999999986432 221111112222110 1111222211 1223233322211
Q ss_pred ----------EeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH--HHHHHHHcCCCEEEEEeCC
Q 004311 135 ----------CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT--VDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 135 ----------~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~~~p~iiviNK~ 202 (762)
+...++.+.||||+|... .++. ....||.+++|++...|...|... +++. .-++|+||+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aDIiVVNKa 204 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMEL------ADLIVINKA 204 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhh------hheEEeehh
Confidence 123468999999999873 3322 577899999998866665555432 2222 248999999
Q ss_pred CCCCC
Q 004311 203 DRMGA 207 (762)
Q Consensus 203 D~~~~ 207 (762)
|+...
T Consensus 205 Dl~~~ 209 (332)
T PRK09435 205 DGDNK 209 (332)
T ss_pred cccch
Confidence 98643
No 294
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.9e-11 Score=114.48 Aligned_cols=120 Identities=16% Similarity=0.044 Sum_probs=87.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
--+|.|+|.-||||||+++++-..-... +---.+. +--.|+.....+++..+..+.|||..|+.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~--------------~~~l~~~--ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKA--------------YGGLNPS--KITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhh--------------hcCCCHH--HeecccceeecceeeccceeEEEEcCChH
Confidence 3578999999999999999883211000 0000000 12236667777777788999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcch-----hHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQS-----QSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~-----qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
...+.+..++..|+++|+||||.+.... +-+.+..+-...++|+++.+||-|+.++
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999999884322 2233444445579999999999998654
No 295
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.23 E-value=2.3e-11 Score=111.56 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|.|+|..|+|||||+++|+...... ....+...+.++.............+.+||++|...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD-----------------NSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-------------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc-----------------cccccccCCCcEEEEEEEecCCceEEEEEecCcccee
Confidence 48999999999999999997543320 0000111233444334444444556999999999888
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHH---HHHHH--cCCCEEEEEeCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVD---RQMRR--YEVPRLAFINKLD 203 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~---~~~~~--~~~p~iiviNK~D 203 (762)
.......+..+|++|+|+|+.+....+. ..+. ..... .++|+++|.||.|
T Consensus 64 ~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 64 YSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 8777777999999999999987653333 2222 22221 3599999999998
No 296
>PLN00023 GTP-binding protein; Provisional
Probab=99.23 E-value=1.1e-10 Score=123.42 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-------------c
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------------K 138 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------~ 138 (762)
..+|+++|..++|||||+.+|+...-.- .....-|.++......+.. .
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~-------------------~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k 81 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIA-------------------RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCccc-------------------ccCCceeeeEEEEEEEECCcccccccccccCCc
Confidence 3579999999999999999996321100 0001122232222222211 2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHHc---------------CCCEEEEEeCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY---------------EVPRLAFINKL 202 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~~---------------~~p~iiviNK~ 202 (762)
...++||||+|+..|...+...++.+|++|+|+|.+..........|. .+... ++|++||.||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 367999999999999999999999999999999998865555444443 23322 47899999999
Q ss_pred CCCC
Q 004311 203 DRMG 206 (762)
Q Consensus 203 D~~~ 206 (762)
|+..
T Consensus 162 DL~~ 165 (334)
T PLN00023 162 DIAP 165 (334)
T ss_pred cccc
Confidence 9964
No 297
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.20 E-value=2.9e-10 Score=121.82 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=25.5
Q ss_pred cceeeecccccCCCchHHHHH-HHHhcCCC
Q 004311 317 KFIPVFMGSAFKNKGVQPLLD-GVLSYLPC 345 (762)
Q Consensus 317 ~~~Pv~~~SA~~~~Gi~~Lld-~i~~~lPs 345 (762)
.+.+++.+||+.+.|++.|.+ .+.+++|.
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 356788889999999999998 69999985
No 298
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=8.2e-11 Score=106.87 Aligned_cols=116 Identities=22% Similarity=0.192 Sum_probs=85.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
+-..+|+|.+++|||+|+-++...+-. + + +.- .-|+........++-...++.||||+|++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs--------~----s-Yit------TiGvDfkirTv~i~G~~VkLqIwDtAGqE 68 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFS--------G----S-YIT------TIGVDFKIRTVDINGDRVKLQIWDTAGQE 68 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccc--------c----c-eEE------EeeeeEEEEEeecCCcEEEEEEeecccHH
Confidence 445679999999999999888432110 0 0 000 02333333334444445789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcC---CCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE---VPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~---~p~iiviNK~D~~~ 206 (762)
.|...+..+.+...++|+|.|.+.|.......-|-+-.+.+ +|-++|.||.|.++
T Consensus 69 rFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 69 RFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred HHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 99999999999999999999999998888777776655554 56799999999864
No 299
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.7e-10 Score=105.33 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=88.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+-+-.+.++|+.|.|||.|+.+++...- ++. ....-|+...+..+++..+..++++|||+|
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kf--------kDd-----------ssHTiGveFgSrIinVGgK~vKLQIWDTAG 67 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKF--------KDD-----------SSHTIGVEFGSRIVNVGGKTVKLQIWDTAG 67 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhh--------ccc-----------ccceeeeeecceeeeecCcEEEEEEeeccc
Confidence 3456789999999999999999964311 111 001145555666666666778999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~~ 206 (762)
+++|.+.+..+++.|-+++||.|++..........|-. ++. .++-++++.||-|+..
T Consensus 68 QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 68 QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 99999999999999999999999998777766666643 233 3455677889999853
No 300
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=9.9e-11 Score=113.56 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=87.6
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+..-.|+++|.+++|||-|+.++....-.+.. . ..-|+........+.-+-.+.+||||+
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~S------k-------------sTIGvef~t~t~~vd~k~vkaqIWDTA 71 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLES------K-------------STIGVEFATRTVNVDGKTVKAQIWDTA 71 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCccc------c-------------cceeEEEEeeceeecCcEEEEeeeccc
Confidence 345677999999999999999999432211110 0 113444455445555555788999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.|-+|++|.|.+...+.+....| ++++. .++++++|.||.|+.
T Consensus 72 GQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 72 GQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred chhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 9999999999999999999999999887777765554 44444 368899999999984
No 301
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.17 E-value=3.4e-10 Score=117.67 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=77.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (762)
+-+-.|++||-||+|||||++++... ..+. -|| +=+|.......+.. .+..|.+-|.|
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~A---kPKI------------adY------pFTTL~PnLGvV~~~~~~sfv~ADIP 215 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAA---KPKI------------ADY------PFTTLVPNLGVVRVDGGESFVVADIP 215 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhc---CCcc------------cCC------ccccccCcccEEEecCCCcEEEecCc
Confidence 34568999999999999999999432 2221 122 23466665555554 45679999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCCCc----chhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVGGV----QSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~gv----~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
|.++ +--...+=+..|-+.+.|||.+.-. ...-..++..+.+ .++|.+||+||+|..
T Consensus 216 GLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 216 GLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred ccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 9853 2223345556678999999997543 2333444555544 378999999999964
No 302
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.6e-10 Score=103.67 Aligned_cols=113 Identities=22% Similarity=0.225 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecc----eEEEeecCeeEEEE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA----ATSCAWKDYQINII 145 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~----~~~~~~~~~~i~li 145 (762)
+-+-.|+++|..|+|||.|+.++. .|. ...| .|.|+... ...+..+..++.+|
T Consensus 5 kflfkivlvgnagvgktclvrrft--qgl------fppg---------------qgatigvdfmiktvev~gekiklqiw 61 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QGL------FPPG---------------QGATIGVDFMIKTVEVNGEKIKLQIW 61 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--ccC------CCCC---------------CCceeeeeEEEEEEEECCeEEEEEEe
Confidence 345689999999999999999983 121 1222 23344332 22233345789999
Q ss_pred eCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 146 DTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 146 DTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
||+|+++|.+.+.+++|.|++.|||.|.+......-.--| +.... .++-.|+|.||+|+.
T Consensus 62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 9999999999999999999999999999876554443333 33322 344458999999984
No 303
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.9e-10 Score=111.79 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=85.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.|.++|..|+|||+|+-.|++.+.. . .-+++....+.+..++....|||-|||.+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-------------~-----------TvtSiepn~a~~r~gs~~~~LVD~PGH~r 94 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-------------G-----------TVTSIEPNEATYRLGSENVTLVDLPGHSR 94 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-------------C-----------eeeeeccceeeEeecCcceEEEeCCCcHH
Confidence 67999999999999999998643110 0 12355666677777777899999999999
Q ss_pred cHHHHHHHHH---hcCEEEEEEeCCCCc---chhHHHHHHHH-----HHcCCCEEEEEeCCCCCCCChhHHHH
Q 004311 153 FTVEVERALR---VLDGAILVLCSVGGV---QSQSITVDRQM-----RRYEVPRLAFINKLDRMGADPWKVLD 214 (762)
Q Consensus 153 f~~~~~~al~---~aD~aIlVvDa~~gv---~~qt~~~~~~~-----~~~~~p~iiviNK~D~~~~~~~~~~~ 214 (762)
........+. .+-++|||||+..-. ..-.+.++..+ ...++|++|+.||.|+.-+.+.+.++
T Consensus 95 lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 95 LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 9888888777 789999999997532 22222233322 24567899999999998877655443
No 304
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.14 E-value=7.5e-10 Score=113.04 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEE-eec-CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC-AWK-DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~-~~~i~liDTPG~ 150 (762)
..|+++|..|+|||||+++|....-. .+....+......... ... ..++.+|||+|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq 64 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP---------------------EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc---------------------ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH
Confidence 67999999999999999999532211 0011111111111111 111 467999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCC-CcchhHHHHHH-HHHHc---CCCEEEEEeCCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVG-GVQSQSITVDR-QMRRY---EVPRLAFINKLDRMGA 207 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~-gv~~qt~~~~~-~~~~~---~~p~iiviNK~D~~~~ 207 (762)
.+|...+..+.+.++++++++|... -........|. .+... +.|++++.||+|+...
T Consensus 65 ~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 65 EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 9999999999999999999999986 23333334444 44443 5899999999999754
No 305
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.14 E-value=4.2e-10 Score=118.83 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=85.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
-||+++|+.|+|||||+|+|+...-.... ... +.......+.+++......+..++ ..+++|||||.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~-~~~----------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSD-YPP----------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcccc-CCC----------CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 48999999999999999999643221110 000 001111223334444455556666 57999999998
Q ss_pred cCcHHH---------------------HHHHHH-------hcCEEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004311 151 VDFTVE---------------------VERALR-------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINK 201 (762)
Q Consensus 151 ~df~~~---------------------~~~al~-------~aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~~p~iiviNK 201 (762)
.++... ..+..+ .+|++++++++. .++...+...++.+.. ++|+++|+||
T Consensus 74 gd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK 152 (276)
T cd01850 74 GDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAK 152 (276)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEEC
Confidence 665321 111112 378899999987 4777777888888875 8999999999
Q ss_pred CCCCCCC-hhHHHHHHHHHhc
Q 004311 202 LDRMGAD-PWKVLDQARSKLR 221 (762)
Q Consensus 202 ~D~~~~~-~~~~~~~i~~~l~ 221 (762)
+|+...+ .....+.+++.+.
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l~ 173 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDIE 173 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHHH
Confidence 9996422 2233344444443
No 306
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=9.4e-11 Score=106.17 Aligned_cols=111 Identities=23% Similarity=0.186 Sum_probs=80.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|.++|-.|+||||++-+|- . +++.. .--|+..+...+.+++.++++||..|+-.
T Consensus 19 ~rililgldGaGkttIlyrlq--v------gevvt----------------tkPtigfnve~v~yKNLk~~vwdLggqtS 74 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQ--V------GEVVT----------------TKPTIGFNVETVPYKNLKFQVWDLGGQTS 74 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcc--c------Ccccc----------------cCCCCCcCccccccccccceeeEccCccc
Confidence 458899999999999877661 1 11111 11255566677788999999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcc--hhHHHHHHHHH---HcCCCEEEEEeCCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQ--SQSITVDRQMR---RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~--~qt~~~~~~~~---~~~~p~iiviNK~D~~~~ 207 (762)
..+-|..++...|.+|+|||+.+-.. ..-.++...+. -.+..+++|.||+|..++
T Consensus 75 irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 75 IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 99999999999999999999986532 22233333332 235567899999998654
No 307
>PTZ00099 rab6; Provisional
Probab=99.12 E-value=3.7e-10 Score=111.34 Aligned_cols=68 Identities=21% Similarity=0.097 Sum_probs=54.0
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
+...+.||||||+..|...+..+++.+|++|+|+|++.....+....|.. +.. .++|+++|.||+|+.
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 34789999999999999999999999999999999988655544433322 222 357889999999984
No 308
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=8.1e-10 Score=99.73 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=81.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.|..+|-.++||||++-.|....... .--|+......+.+++..||+||..|+.+.
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~------------------------~ipTvGFnvetVtykN~kfNvwdvGGqd~i 74 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVT------------------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKI 74 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCcc------------------------cccccceeEEEEEeeeeEEeeeeccCchhh
Confidence 48899999999999999884321111 011444455667789999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCc--chhHHHHHHHH---HHcCCCEEEEEeCCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGV--QSQSITVDRQM---RRYEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv--~~qt~~~~~~~---~~~~~p~iiviNK~D~~~~~ 208 (762)
..-+..++....++|||+|+.+.. ++.-.++.+.+ .-...|++|..||-|++++.
T Consensus 75 RplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 75 RPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred hHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 999999999999999999987642 22222222222 22467899999999998764
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.05 E-value=2.6e-09 Score=108.31 Aligned_cols=128 Identities=19% Similarity=0.162 Sum_probs=70.8
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeec-ceE--------------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS-AAT-------------- 133 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~-~~~-------------- 133 (762)
...+++|+++|+.|+|||||+++|+...+...+.+-+.+... .-.|....+ ..|..+.. ...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~--~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVI--TKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCC--CcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHH
Confidence 456999999999999999999999976443222222222110 011222211 12221100 000
Q ss_pred -EEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 134 -SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 134 -~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.....+..+.||+|.|...... ......+..+.|+|+..+...+. ......+.|.++++||+|+.+
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 0011246899999999321111 11123566778999987654322 222334678899999999853
No 310
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.04 E-value=3.7e-10 Score=103.73 Aligned_cols=114 Identities=20% Similarity=0.024 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-.|+++|..-+|||+|+-+++...- .+.+-.. -..+.......++-....++||||+|+++
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkF-----------------n~kHlsT--lQASF~~kk~n~ed~ra~L~IWDTAGQEr 74 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKF-----------------NCKHLST--LQASFQNKKVNVEDCRADLHIWDTAGQER 74 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhc-----------------chhhHHH--HHHHHhhcccccccceeeeeeeeccchHh
Confidence 4688999999999999988853211 0000000 00012222233333456899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH----HHcCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~----~~~~~p~iiviNK~D~~ 205 (762)
|...-.-+++.+|+++||.|.++....|-...|-.- .-..+-++||.||+|+.
T Consensus 75 fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 75 FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 988888889999999999999999888887776432 22346679999999984
No 311
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.04 E-value=3.2e-09 Score=117.25 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe-----------------
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----------------- 136 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------------- 136 (762)
.|+|+|.+|+|||||+|+|......+ .++ .+.|++.......
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~---------------~~y------~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~ 61 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEI---------------ANY------PFTTIDPNVGVAYVRVECPCKELGVKCNPR 61 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccc---------------cCC------CCcceeeeeeeeeeccCCchhhhhhhhccc
Confidence 69999999999999999995322111 011 1222222221111
Q ss_pred -------ecCeeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004311 137 -------WKDYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 137 -------~~~~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~~ 175 (762)
+....++++||||..+ ......+.++.||++++|+|+..
T Consensus 62 ~~~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 62 NGKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cccccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1235689999999742 23355677999999999999973
No 312
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.01 E-value=1.7e-09 Score=97.72 Aligned_cols=112 Identities=23% Similarity=0.263 Sum_probs=78.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG 149 (762)
+-.+|.++|-.||||||++..|-.+.. + ..-+..|.. ...+.+.+ .++|+||..|
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~--------~------------hltpT~GFn----~k~v~~~g~f~LnvwDiGG 71 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP--------R------------HLTPTNGFN----TKKVEYDGTFHLNVWDIGG 71 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh--------h------------hccccCCcc----eEEEeecCcEEEEEEecCC
Confidence 334599999999999999999932211 0 001113333 23344555 8999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcch--hHHHH---HHHHHHcCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQS--QSITV---DRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~--qt~~~---~~~~~~~~~p~iiviNK~D~~~ 206 (762)
+....+-|..++...|+.|+|||+++.-.. ..++. ++..+...+|++|+.||-|+..
T Consensus 72 qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 72 QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 999999999999999999999998764221 12222 2223345789999999999853
No 313
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.01 E-value=7.2e-10 Score=114.29 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=38.3
Q ss_pred eEEEEeCCCCcCcHHHHHHHH--------HhcCEEEEEEeCCCCcchhHH-----HHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 141 QINIIDTPGHVDFTVEVERAL--------RVLDGAILVLCSVGGVQSQSI-----TVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al--------~~aD~aIlVvDa~~gv~~qt~-----~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.+.|+||||+.+|...+...- ...=++|+++|+..-...... .......+.++|.|.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 799999999998866553333 233478999999754332221 112233457999999999999964
No 314
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.00 E-value=4.9e-10 Score=112.43 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeee------------------cCCCccccccCChhhhhhhcceeecc
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEV------------------RGRDGVGAKMDSMDLEREKGITIQSA 131 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v------------------~~~~~~~~~~d~~~~e~~~giTi~~~ 131 (762)
++...|.++|..|+||||++.+|......-..+..+ ++.-.+.-+|.....-...||+....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 445678999999999999999996433322111101 00000111111111122233332211
Q ss_pred eEEEe-----------ecCeeEEEEeCCCCcCcHH------HHHHHHHh--cCEEEEEEeCCCCcchhH-----HHHHHH
Q 004311 132 ATSCA-----------WKDYQINIIDTPGHVDFTV------EVERALRV--LDGAILVLCSVGGVQSQS-----ITVDRQ 187 (762)
Q Consensus 132 ~~~~~-----------~~~~~i~liDTPG~~df~~------~~~~al~~--aD~aIlVvDa~~gv~~qt-----~~~~~~ 187 (762)
..... -....+.||||||+++-.. ....++.. .-+++.|+|....-.+.| ......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 11111 1236799999999975321 12223322 236678999865544333 233455
Q ss_pred HHHcCCCEEEEEeCCCCCCCCh
Q 004311 188 MRRYEVPRLAFINKLDRMGADP 209 (762)
Q Consensus 188 ~~~~~~p~iiviNK~D~~~~~~ 209 (762)
+.+.++|.|++.||.|..+..+
T Consensus 177 lyktklp~ivvfNK~Dv~d~~f 198 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEF 198 (366)
T ss_pred HHhccCCeEEEEecccccccHH
Confidence 6678999999999999976643
No 315
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.96 E-value=1.2e-08 Score=105.88 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=73.7
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
...-.||+++|.+|+|||||+|+|+....... .+. .+.|.........+++..+++||||
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v--------------~~~------~~~T~~~~~~~~~~~g~~i~vIDTP 87 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAAT--------------SAF------QSETLRVREVSGTVDGFKLNIIDTP 87 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCccc--------------CCC------CCceEEEEEEEEEECCeEEEEEECC
Confidence 34557999999999999999999975432110 011 2235555555667888999999999
Q ss_pred CCcCcHH------H----HHHHHH--hcCEEEEEEeCCC-CcchhHHHHHHHHHH-cC----CCEEEEEeCCCCC
Q 004311 149 GHVDFTV------E----VERALR--VLDGAILVLCSVG-GVQSQSITVDRQMRR-YE----VPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~------~----~~~al~--~aD~aIlVvDa~~-gv~~qt~~~~~~~~~-~~----~p~iiviNK~D~~ 205 (762)
|..+... . +.+++. ..|++++|..... .....+..+++.+.+ ++ .++++|+||+|..
T Consensus 88 Gl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 88 GLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred CcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 9987631 1 122232 4577777754432 233444455554433 33 3578888888875
No 316
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.96 E-value=4.8e-10 Score=93.87 Aligned_cols=67 Identities=37% Similarity=0.648 Sum_probs=61.5
Q ss_pred ccEEEEEEEeeeecCCCeEEe--cCCCeE---EEcCeEEEeecCcccccccccCCCEEEEccc-c-cccCceee
Q 004311 386 GQLTYLRIYEGVIRKGDFIIN--VNTGKK---IKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFT 452 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~--~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~ 452 (762)
|+++++||+||+|++||+|++ ..++++ .+|.+|+.+++...++++.+.||+++++.++ + .++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 689999999999999999999 545555 8999999999999999999999999999999 7 79999996
No 317
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.94 E-value=8.8e-09 Score=103.01 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
-.+|+++|..|+|||+|+-+++...-.-. +.-+.+ +.......+.-....+.|+||+|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-------------y~ptie-------d~y~k~~~v~~~~~~l~ilDt~g~~ 62 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-------------YDPTIE-------DSYRKELTVDGEVCMLEILDTAGQE 62 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-------------cCCCcc-------ccceEEEEECCEEEEEEEEcCCCcc
Confidence 35799999999999999998864322110 000000 1122222333334678899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
+|......+++.+|+-++|.+.++..+.+.... +.++. ...+|+++|.||.|+..
T Consensus 63 ~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 63 EFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred cChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 999999999999999999999988766555433 33332 24689999999999853
No 318
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.9e-10 Score=120.58 Aligned_cols=133 Identities=29% Similarity=0.352 Sum_probs=108.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeee----------eecCCCccccccCChhhhhhhcceeecceEEEeecCe
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY 140 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 140 (762)
..+||+++||.++||||+.. +..|.++++- ...+...++|.+|....|+++|++++.....+....+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred cccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 45899999999999999987 4455554421 0122245689999999999999998877777777789
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCC-CEEEEEeCCCCCC
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEV-PRLAFINKLDRMG 206 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~-p~iiviNK~D~~~ 206 (762)
.+++||.|||.+|...+....+.||.+++.|.+..| ...||+++..++..+++ ++++.+||||...
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 999999999999999999999999999999998433 45889999999988875 4688999999864
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.91 E-value=3.7e-09 Score=107.31 Aligned_cols=128 Identities=29% Similarity=0.389 Sum_probs=72.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCcee------eeeecCCCccccccCChhhhhhhcceeecceEEEe-----
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHE------IHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----- 136 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~------~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----- 136 (762)
+-..|+|.|.+|+|||||+++|...- |..-. .+...+|.-+..-.-........|+-+.+....-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45679999999999999999997432 22111 11223331111111222233446776666554432
Q ss_pred -----------ecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH--HHHHHHHcCCCEEEEEeCCC
Q 004311 137 -----------WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT--VDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 137 -----------~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~~~p~iiviNK~D 203 (762)
.-++.+.||.|-|--. +++. -...+|..++|+-...|...|... +++. +-|+|+||.|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~~-I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQ--SEVD-IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSST--HHHH-HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCc--cHHH-HHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 2369999999998643 2222 367899999999999888777643 2332 4499999999
Q ss_pred CCCC
Q 004311 204 RMGA 207 (762)
Q Consensus 204 ~~~~ 207 (762)
++++
T Consensus 179 ~~gA 182 (266)
T PF03308_consen 179 RPGA 182 (266)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7543
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.90 E-value=2.5e-08 Score=102.46 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=84.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc------CCceee-eee---cCCCccc--------cccCChhhh------hh--h
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT------GRIHEI-HEV---RGRDGVG--------AKMDSMDLE------RE--K 124 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~------g~i~~~-~~v---~~~~~~~--------~~~d~~~~e------~~--~ 124 (762)
..+.|+++|+.++||||++++|+... |.+++. -.+ +....+. .+.|..+.. .+ .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 46789999999999999999997542 222210 000 0000000 011111111 11 0
Q ss_pred --cceeecceEEEee--c-CeeEEEEeCCCCcCc-------------HHHHHHHHH-hcCEEEEEEeCCCCcchhH-HHH
Q 004311 125 --GITIQSAATSCAW--K-DYQINIIDTPGHVDF-------------TVEVERALR-VLDGAILVLCSVGGVQSQS-ITV 184 (762)
Q Consensus 125 --giTi~~~~~~~~~--~-~~~i~liDTPG~~df-------------~~~~~~al~-~aD~aIlVvDa~~gv~~qt-~~~ 184 (762)
+-.+......++. . -..++||||||..+. ...+..+++ ..+.+++|+|+..+...+. .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 1112222223332 2 268999999999532 123566777 4568999999999888877 588
Q ss_pred HHHHHHcCCCEEEEEeCCCCCCC
Q 004311 185 DRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 185 ~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
.+.+...+.|.++|+||+|....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCc
Confidence 88888899999999999998753
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.90 E-value=4e-08 Score=105.33 Aligned_cols=131 Identities=23% Similarity=0.281 Sum_probs=71.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCcc--cccc-CChhh---hhhhcceeecceEE------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV--GAKM-DSMDL---EREKGITIQSAATS------ 134 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~--~~~~-d~~~~---e~~~giTi~~~~~~------ 134 (762)
.....|+|+|.+|+|||||++.|.... |.....-..+..... ..+. |.... -...+..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 456889999999999999999987532 211111111111000 0001 11000 00112222111110
Q ss_pred ----------EeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 135 ----------CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 135 ----------~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
+...++.+.||||||... .....+..+|.++++.+...+...+.. .. .-.++|.++++||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~---~~-~l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGI---KA-GLMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHH---HH-HHhhhccEEEEEcccc
Confidence 233579999999999752 223457788999988765544322211 11 1246889999999998
Q ss_pred CCC
Q 004311 205 MGA 207 (762)
Q Consensus 205 ~~~ 207 (762)
.+.
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 654
No 322
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.88 E-value=3e-08 Score=106.51 Aligned_cols=151 Identities=11% Similarity=0.177 Sum_probs=96.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhc---ceeecce---EEEeec-----C
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG---ITIQSAA---TSCAWK-----D 139 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~g---iTi~~~~---~~~~~~-----~ 139 (762)
--..|+++|++++|||||+++|....- +.. +.+.....+..|..+.. ..| +|.+... ..++.. .
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~---i~~~~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~~~~~~~ 90 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLV-LPN---ISNEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININEGTK 90 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhc-ccc---ccchhHHhHHHhccCcC-CCCCCcccCCCccccCcceEEeccCCCc
Confidence 346799999999999999999975421 111 11110112223332221 145 4444443 222221 2
Q ss_pred eeEEEEeCCCCcC-------------------------cHHH----HHHHHH-hcCEEEEEE-eCC------CCcchhHH
Q 004311 140 YQINIIDTPGHVD-------------------------FTVE----VERALR-VLDGAILVL-CSV------GGVQSQSI 182 (762)
Q Consensus 140 ~~i~liDTPG~~d-------------------------f~~~----~~~al~-~aD~aIlVv-Da~------~gv~~qt~ 182 (762)
..+.||||+|+.+ |... +...+. .+|.+|+|. |++ ++.....+
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence 6899999999732 2221 456677 899999999 886 55667778
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 183 TVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 183 ~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
+++..+++.++|+++++||.|-.........+++.++++..+.+
T Consensus 171 ~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~ 214 (492)
T TIGR02836 171 RVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLA 214 (492)
T ss_pred HHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEE
Confidence 88999999999999999999954334445566777777755443
No 323
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.85 E-value=6.9e-09 Score=92.27 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC--
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (762)
.+++++|.+++|||||+++|-.+.-...+ .-.++|++. ..|||||-
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------------------------------TQAve~~d~--~~IDTPGEy~ 49 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------------------------------TQAVEFNDK--GDIDTPGEYF 49 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------------------------------cceeeccCc--cccCCchhhh
Confidence 46899999999999999999432211111 112334322 36899994
Q ss_pred --cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 --~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
..+.......+..+|..++|-.++++.+.-. -..+.-...|+|-+++|.|++
T Consensus 50 ~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 50 EHPRWYHALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred hhhHHHHHHHHHhhccceeeeeecccCccccCC---cccccccccceEEEEeccccc
Confidence 4555556666788999999999988743221 122233567799999999996
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.84 E-value=1.3e-08 Score=104.51 Aligned_cols=129 Identities=26% Similarity=0.314 Sum_probs=77.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH---hcCCceeeeeecCCCcc---ccccCChhh---hhhhcceeecceEEEee-----
Q 004311 72 LRNIGISAHIDSGKTTLTERILF---YTGRIHEIHEVRGRDGV---GAKMDSMDL---EREKGITIQSAATSCAW----- 137 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~---~~g~i~~~~~v~~~~~~---~~~~d~~~~---e~~~giTi~~~~~~~~~----- 137 (762)
-..|+|.|.||+|||||++.|.. ..|.....-.|+....+ +..-|.... ...+|+-+.+....-..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~ 130 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR 130 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence 34699999999999999999963 33332222222322110 222222221 12345555554433222
Q ss_pred -----------cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 138 -----------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 138 -----------~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
-++.+.||.|-|--.- ++ .-...+|..++|.=+.-|...|.... --+.+--|+||||.|+.+
T Consensus 131 at~~~i~~ldAaG~DvIIVETVGvGQs--ev-~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~~ 203 (323)
T COG1703 131 ATREAIKLLDAAGYDVIIVETVGVGQS--EV-DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRKG 203 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcc--hh-HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChhh
Confidence 3689999999986432 11 13467899999998888888876542 112233499999999865
Q ss_pred C
Q 004311 207 A 207 (762)
Q Consensus 207 ~ 207 (762)
+
T Consensus 204 A 204 (323)
T COG1703 204 A 204 (323)
T ss_pred H
Confidence 4
No 325
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.84 E-value=2e-09 Score=96.14 Aligned_cols=111 Identities=19% Similarity=0.152 Sum_probs=77.0
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHHH
Q 004311 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (762)
Q Consensus 77 iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 156 (762)
++|.+..|||.|+-++ +.|+. -.+ +.++ .-||......+.+.-+..++++|||+|+++|.+.
T Consensus 2 llgds~~gktcllir~--kdgaf------l~~---~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsv 63 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRF--KDGAF------LAG---NFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV 63 (192)
T ss_pred ccccCccCceEEEEEe--ccCce------ecC---ceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhh
Confidence 5799999999986544 22221 001 0000 0244444444444445678999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 157 VERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 157 ~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
+..+++.+|..+++.|............|- +..+ ..+.+.++.||+|+.
T Consensus 64 t~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 64 THAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred hHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 999999999999999998877766665553 3333 456778999999984
No 326
>PTZ00258 GTP-binding protein; Provisional
Probab=98.82 E-value=1.7e-07 Score=102.68 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-----------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD----------- 139 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~----------- 139 (762)
+-..|+|+|.+|+|||||+|+|.... . . +. ++ +++|+......+.+.+
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~--~---v~---------n~------pftTi~p~~g~v~~~d~r~~~l~~~~~ 78 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-V--P---AE---------NF------PFCTIDPNTARVNVPDERFDWLCKHFK 78 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-c--c---cc---------CC------CCCcccceEEEEecccchhhHHHHHcC
Confidence 34569999999999999999993221 1 1 11 11 5667777777766653
Q ss_pred ------eeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCC
Q 004311 140 ------YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (762)
Q Consensus 140 ------~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~ 174 (762)
.++.|+||||... ........++.+|++++|||+.
T Consensus 79 ~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 79 PKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3599999999753 3345677889999999999984
No 327
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.81 E-value=2.6e-07 Score=99.93 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------- 139 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------- 139 (762)
..|+|+|.+|+|||||+|+|.... .. +.+ + +++|++.....+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~---~~---v~n---------y------pftTi~p~~G~~~v~d~r~~~l~~~~~p~ 61 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG---AE---AAN---------Y------PFCTIEPNVGVVPVPDPRLDKLAEIVKPK 61 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---Ce---ecc---------c------ccccccceEEEEEeccccchhhHHhcCCc
Confidence 369999999999999999995322 11 111 1 5566666655555443
Q ss_pred ----eeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCC
Q 004311 140 ----YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (762)
Q Consensus 140 ----~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~ 174 (762)
..+.|+||||..+ +.......++.+|++++|||+.
T Consensus 62 ~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 62 KIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred cccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3599999999753 2334567789999999999995
No 328
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=4.2e-09 Score=98.89 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
+.+....+.|+|.-++||||++.+.+ .|...+ +...+...|.+. ..+.+...+.++.+|||
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryC--kgifTk------dykktIgvdfle-----------rqi~v~~Edvr~mlWdt 76 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTK------DYKKTIGVDFLE-----------RQIKVLIEDVRSMLWDT 76 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHh--cccccc------ccccccchhhhh-----------HHHHhhHHHHHHHHHHh
Confidence 34566789999999999999999985 222211 100011222221 11122334567889999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-H--HHcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M--RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~--~~~~~p~iiviNK~D~~ 205 (762)
+|+.+|...+..++|.|.+++||++.++........-|.. . .-..+|.++|-||+|+.
T Consensus 77 agqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 77 AGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred ccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 9999999999999999999999999988766555444543 2 23579999999999984
No 329
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.79 E-value=4.2e-08 Score=91.02 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 152 (762)
+..+||..-+|||+|+..+. .|.... .++- .-|+...+..+.+.- ...+++||||+|+++
T Consensus 10 rlivigdstvgkssll~~ft--~gkfae---lsdp--------------tvgvdffarlie~~pg~riklqlwdtagqer 70 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFT--EGKFAE---LSDP--------------TVGVDFFARLIELRPGYRIKLQLWDTAGQER 70 (213)
T ss_pred EEEEEcCCcccHHHHHHHHh--cCcccc---cCCC--------------ccchHHHHHHHhcCCCcEEEEEEeeccchHH
Confidence 35689999999999999883 222111 1110 011111111111110 125789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCC----EEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVP----RLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p----~iiviNK~D~~ 205 (762)
|.+.+.++++++=++++|.|.+..........|-.-.++ +-| .++|..|.|+.
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 999999999999999999999987777766666543333 223 36788999985
No 330
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=1.2e-07 Score=95.21 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=36.6
Q ss_pred CeeEEEEeCCCC--cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE--EEEEeCCCCC
Q 004311 139 DYQINIIDTPGH--VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR--LAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~--~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~--iiviNK~D~~ 205 (762)
+....+|+|.|. .... . -..+|.+|+|+|+.++...+.. ...++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~---~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF---S--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCCccccc---c--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcc
Confidence 457889999993 2111 1 1236899999999987653321 0123334 9999999986
No 331
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.76 E-value=8.1e-08 Score=98.08 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=77.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 152 (762)
+|.++|+.++||||....+..+... .| ...-|.|++.....+.. ....+++||.||+.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p----------------~d----T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~ 60 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP----------------RD----TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD 60 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G----------------GG----GGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc----------------hh----ccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence 4789999999999999888532110 01 11235577666666654 456999999999988
Q ss_pred cHHH-----HHHHHHhcCEEEEEEeCCCCcchhHHH----HHHHHHHc--CCCEEEEEeCCCCCCCChh-HHHHHHHHHh
Q 004311 153 FTVE-----VERALRVLDGAILVLCSVGGVQSQSIT----VDRQMRRY--EVPRLAFINKLDRMGADPW-KVLDQARSKL 220 (762)
Q Consensus 153 f~~~-----~~~al~~aD~aIlVvDa~~gv~~qt~~----~~~~~~~~--~~p~iiviNK~D~~~~~~~-~~~~~i~~~l 220 (762)
|... ....++.+++.|+|+|+.......... .+..+.+. ++.+.+++.|||+...+.. +..+++.+.+
T Consensus 61 ~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 61 FMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp TTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 7665 466789999999999998433333322 33334443 5678999999999754432 3333444433
No 332
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7.1e-08 Score=87.02 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=81.2
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
-.-|-.-.|+|..|+|||.|+..+..+.-+.+.+. .-|+......+.+.-...++.+|||+
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcph-------------------tigvefgtriievsgqkiklqiwdta 68 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-------------------TIGVEFGTRIIEVSGQKIKLQIWDTA 68 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCc-------------------ccceecceeEEEecCcEEEEEEeecc
Confidence 34567788999999999999998854322211100 02233333333344455789999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHHcCCC---EEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRYEVP---RLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~~~p---~iiviNK~D~~ 205 (762)
|+.+|...+.++++.+-++++|.|.+..-.......|-. ++...-| ++++.||.|+.
T Consensus 69 gqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 69 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred cHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 999999999999999999999999987655554444432 3333333 56778999985
No 333
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.75 E-value=5.3e-08 Score=84.89 Aligned_cols=82 Identities=26% Similarity=0.256 Sum_probs=71.4
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEE--Eccc---
Q 004311 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV--- 443 (762)
Q Consensus 370 ~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~--i~gl--- 443 (762)
+.||.++|.++|..+. |+++.|||.+|+++.||+|++.+.+...+|++|... ..++++|.|||.++ +.|+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~----~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC----CcCcCEECCCCEEEEEECCCCHH
Confidence 4699999999998776 999999999999999999999999988899999743 45789999999998 4665
Q ss_pred ccccCceeecCC
Q 004311 444 DCASGDTFTDGS 455 (762)
Q Consensus 444 ~~~~GdtL~~~~ 455 (762)
+++.||.|++.+
T Consensus 78 ~v~~G~vl~~~~ 89 (91)
T cd03693 78 DIKRGDVAGDSK 89 (91)
T ss_pred HcCCcCEEccCC
Confidence 578999999864
No 334
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.4e-08 Score=92.09 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=51.4
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~~ 206 (762)
..+.||||+|+++|.+.+...++.|=+.+|++|-+..-..-..+.| .++.. .+--++++.||.|+.+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 5789999999999999999999999999999999875444444444 33332 2334788899999853
No 335
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.70 E-value=3.7e-08 Score=96.09 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=47.9
Q ss_pred CeeEEEEeCCCCcCc----HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-cCCCEEEEEeCC
Q 004311 139 DYQINIIDTPGHVDF----TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-YEVPRLAFINKL 202 (762)
Q Consensus 139 ~~~i~liDTPG~~df----~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-~~~p~iiviNK~ 202 (762)
...+.||||||..+. ...+..++..+|++|+|+++......+....+.+... .+...++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 467999999998542 2557888899999999999999877666666555544 455578888985
No 336
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=7.3e-08 Score=90.02 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=84.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+.-.+.++|-.|||||||++.|-. ++ +.. .--|.......+...+.+++-+|..||
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKd------------Dr--l~q----------hvPTlHPTSE~l~Ig~m~ftt~DLGGH 74 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKD------------DR--LGQ----------HVPTLHPTSEELSIGGMTFTTFDLGGH 74 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcc------------cc--ccc----------cCCCcCCChHHheecCceEEEEccccH
Confidence 445689999999999999998821 11 000 111444555556778899999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHH----HHcCCCEEEEEeCCCCCCCChh
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM----RRYEVPRLAFINKLDRMGADPW 210 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~----~~~~~p~iiviNK~D~~~~~~~ 210 (762)
..-..-+..++..+|++|++|||.+....+. +..++.+ .-.++|+++..||+|++++..+
T Consensus 75 ~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se 139 (193)
T KOG0077|consen 75 LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE 139 (193)
T ss_pred HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH
Confidence 8888888999999999999999977543332 2222222 2368999999999999987633
No 337
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.70 E-value=3e-07 Score=96.95 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+-.+|+++|.+|+||||++|+|+........ .+ .+.|.........+.+.++++|||||.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs--------------~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL 96 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVS--------------AF------QSEGLRPMMVSRTRAGFTLNIIDTPGL 96 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc--------------CC------CCcceeEEEEEEEECCeEEEEEECCCC
Confidence 4578999999999999999999754321110 00 111222222334467899999999999
Q ss_pred cCcHH---HHHHHHH------hcCEEEEEEeCCC-CcchhHHHHHHHHHH-c----CCCEEEEEeCCCCC
Q 004311 151 VDFTV---EVERALR------VLDGAILVLCSVG-GVQSQSITVDRQMRR-Y----EVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~---~~~~al~------~aD~aIlVvDa~~-gv~~qt~~~~~~~~~-~----~~p~iiviNK~D~~ 205 (762)
.+... +....++ ..|++|+|..... .....+..+++.+.. + -.+.|+++|+.|..
T Consensus 97 ~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 97 IEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred CchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 86522 2223333 4889999954332 244444455544433 2 24689999999965
No 338
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.68 E-value=9.1e-08 Score=80.72 Aligned_cols=76 Identities=37% Similarity=0.453 Sum_probs=65.6
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecC--CCeEEEcCeEEEeecCcccccccccCCCEEEEccc---ccc
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVN--TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV---DCA 446 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl---~~~ 446 (762)
+.++|++++.+++ |+++++||++|+|++||.+++.+ .....+|.+|+... .+++++.|||++++.+. +.+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3678999999986 99999999999999999999988 66778899888664 57889999999998876 378
Q ss_pred cCceee
Q 004311 447 SGDTFT 452 (762)
Q Consensus 447 ~GdtL~ 452 (762)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 898875
No 339
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.68 E-value=1.2e-07 Score=81.22 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=67.4
Q ss_pred CeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEE--Eccc---ccc
Q 004311 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV---DCA 446 (762)
Q Consensus 372 p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~ 446 (762)
||.++|..++..+.|++..|||.+|++++||+|++.+.+...+|++|... ..++++|.|||.++ +.++ +++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~~~l~~~~~~~v~ 76 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDIS 76 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC----CeECCEECCCCEEEEEECCCCHHHCC
Confidence 68889998887657899999999999999999999999988899998743 46899999999998 5676 578
Q ss_pred cCceeec
Q 004311 447 SGDTFTD 453 (762)
Q Consensus 447 ~GdtL~~ 453 (762)
.|++|++
T Consensus 77 ~G~vl~~ 83 (83)
T cd03698 77 PGDVLCS 83 (83)
T ss_pred CCCEEeC
Confidence 8998874
No 340
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.62 E-value=3.7e-07 Score=98.85 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=63.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhccee-ecceEEEeecC-eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI-QSAATSCAWKD-YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~~~~-~~i~liDTPG 149 (762)
..||||+|.+|+|||||+|+|..-.. -+.+ ....|.+- ......+.... -.+.|||.||
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~-------~d~~------------aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG 95 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGH-------EDEG------------AAPTGVVETTMEPTPYPHPKFPNVTLWDLPG 95 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--T-------TSTT------------S--SSSHSCCTS-EEEE-SS-TTEEEEEE--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-------CCcC------------cCCCCCCcCCCCCeeCCCCCCCCCeEEeCCC
Confidence 46999999999999999999942110 0111 00112211 11122333333 3699999999
Q ss_pred Cc--CcHHHHH---HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 150 HV--DFTVEVE---RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 150 ~~--df~~~~~---~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
.. +|..+-. -.+...|..|++.+ +........+++.+.++++|+.+|-+|+|.
T Consensus 96 ~gt~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 96 IGTPNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GGGSS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 73 4433321 13567898777665 345667778889999999999999999995
No 341
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.61 E-value=4.5e-07 Score=95.04 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
...+.-|+|+|.+|+|||||+++|+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999865
No 342
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.56 E-value=1.5e-07 Score=98.57 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=57.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe--------------
Q 004311 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-------------- 140 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-------------- 140 (762)
|+|+|.+|+|||||+|+|......+ . ++ +++|++.....+.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~------~---------n~------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~ 59 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA------A---------NY------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKI 59 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc------c---------cc------cccchhceeeeEEeccchhhhHHHHhCCcee
Confidence 5899999999999999994322111 1 11 56676666666655542
Q ss_pred ---eEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004311 141 ---QINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 141 ---~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~~ 175 (762)
.+.++||||..+ +.......++.+|++++|||+..
T Consensus 60 ~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 60 VPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 599999999753 33355677899999999999864
No 343
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=3.5e-07 Score=88.27 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 155 VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 155 ~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
..+...++.+|++|+|+|+.++...+...+...+...++|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345667778999999999998877777667666666789999999999984
No 344
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.50 E-value=6.3e-07 Score=76.53 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=64.5
Q ss_pred CeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccc
Q 004311 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCA 446 (762)
Q Consensus 372 p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~ 446 (762)
||.+.|..++... |++..|||.+|++++||+|++.+.+...+|++|... ..++++|.|||.+++ .++ +++
T Consensus 1 plr~~I~~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v~ 75 (82)
T cd04089 1 PLRLPIIDKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDIS 75 (82)
T ss_pred CeEEEEEeEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHCC
Confidence 6788888888654 899999999999999999999999988899998732 468999999999985 555 567
Q ss_pred cCceeec
Q 004311 447 SGDTFTD 453 (762)
Q Consensus 447 ~GdtL~~ 453 (762)
.|+.|++
T Consensus 76 ~G~vl~~ 82 (82)
T cd04089 76 PGFVLCS 82 (82)
T ss_pred CCCEEeC
Confidence 8888764
No 345
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.50 E-value=1.3e-06 Score=84.90 Aligned_cols=117 Identities=25% Similarity=0.292 Sum_probs=62.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcce---eecc-----eEEE--------
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT---IQSA-----ATSC-------- 135 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giT---i~~~-----~~~~-------- 135 (762)
++.|.+.|++|||||||+++++..-+.-.+.+-+.+. - -+..|.....+..|.- +.+. ..++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D-i-~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l 90 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD-I-YTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL 90 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece-e-echhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence 5789999999999999999987544322222222221 0 0011111111101211 1111 1111
Q ss_pred --eecCeeEEEEeCCCC--cCcHHHHHHHHHhcC-EEEEEEeCCCCcchhHHHHHHHHHHcCCC-----EEEEEeCCCCC
Q 004311 136 --AWKDYQINIIDTPGH--VDFTVEVERALRVLD-GAILVLCSVGGVQSQSITVDRQMRRYEVP-----RLAFINKLDRM 205 (762)
Q Consensus 136 --~~~~~~i~liDTPG~--~df~~~~~~al~~aD-~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-----~iiviNK~D~~ 205 (762)
.+....+.||.+.|. ..|.. ...| .-|+|||..+|...-- .+=| -++||||.|+.
T Consensus 91 ~~~~~~~Dll~iEs~GNL~~~~sp------~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa 155 (202)
T COG0378 91 VLDFPDLDLLFIESVGNLVCPFSP------DLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLA 155 (202)
T ss_pred hhcCCcCCEEEEecCcceecccCc------chhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhH
Confidence 112257889999992 12222 2345 7899999999853211 1112 38999999984
No 346
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.50 E-value=2.1e-06 Score=87.32 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.||.++|..|+||||++|.||........ . .....|.........+.+..+++|||||.-|
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-----~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d 61 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-----S--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFD 61 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-----c--------------ccCCcccccceeeeeecceEEEEEeCCCCCC
Confidence 47999999999999999999754331110 0 0123455555556688999999999999743
Q ss_pred c-------HHHHHHHH----HhcCEEEEEEeCCCCcchhHHHHHHHHHH-cC----CCEEEEEeCCCCCCC
Q 004311 153 F-------TVEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRR-YE----VPRLAFINKLDRMGA 207 (762)
Q Consensus 153 f-------~~~~~~al----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-~~----~p~iiviNK~D~~~~ 207 (762)
- ..++..++ ...+++|||+... ..+...+..++.+.+ ++ .-++|+++..|....
T Consensus 62 ~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 62 SDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp TTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred CcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 1 22333433 2468999999988 667777777766654 23 236888888887544
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.37 E-value=2.1e-06 Score=87.25 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++...+++.|..|+|||+|+|.++....... .... ..|-|.. +....-+..+.++|.||
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~----------------t~k~--K~g~Tq~---in~f~v~~~~~~vDlPG 192 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIAD----------------TSKS--KNGKTQA---INHFHVGKSWYEVDLPG 192 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhh----------------hcCC--CCcccee---eeeeeccceEEEEecCC
Confidence 4567899999999999999999964322110 0000 2333332 22333467899999999
Q ss_pred C----------cCcHHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 H----------VDFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~----------~df~~~~~~al~---~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+ .|+...+..++- ..=-+.+++|+.-+++.-+...+..+.+.++|..+|+||||+.
T Consensus 193 ~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 193 YGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred cccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 3 456666666653 3345778999999999999999999999999999999999984
No 348
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.37 E-value=8.1e-07 Score=87.36 Aligned_cols=112 Identities=18% Similarity=0.098 Sum_probs=71.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcce-eecceEEEe-ecCeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT-IQSAATSCA-WKDYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giT-i~~~~~~~~-~~~~~i~liDTPG~ 150 (762)
+.+.|||...+|||.|+-.+. ++ ..+.+..+-+. -.+....+. -+...+.||||+|+
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t--~~-------------------~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGq 63 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYT--TN-------------------AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQ 63 (198)
T ss_pred eEEEEECCCCcCceEEEEEec--cC-------------------cCcccccCeEEccceEEEEecCCCEEEEeeeecCCC
Confidence 568899999999999976552 11 12222222111 011112221 23356899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHH-HHHHHH--cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITV-DRQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~-~~~~~~--~~~p~iiviNK~D~~ 205 (762)
.||..-..-++..+|..+++++......... ..- +..... -++|+|+|.+|.|+.
T Consensus 64 edYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 64 EDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred cccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 9998755568889999999888776654443 112 223333 369999999999985
No 349
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.36 E-value=1e-06 Score=95.71 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+.|+++++|.+|+||||+++.+.... ++-. .+ .-+|-..-..++.++-.+|++|||||.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad--------vevq----pY---------aFTTksL~vGH~dykYlrwQViDTPGI 225 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD--------DEVQ----PY---------AFTTKLLLVGHLDYKYLRWQVIDTPGI 225 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc--------cccC----Cc---------ccccchhhhhhhhhheeeeeecCCccc
Confidence 56899999999999999888772111 1111 01 112333334556667779999999998
Q ss_pred cCcH------HHH--HHHHHhc-CEEEEEEeCCC--CcchhH-HHHHHHHH--HcCCCEEEEEeCCCCCC
Q 004311 151 VDFT------VEV--ERALRVL-DGAILVLCSVG--GVQSQS-ITVDRQMR--RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~------~~~--~~al~~a-D~aIlVvDa~~--gv~~qt-~~~~~~~~--~~~~p~iiviNK~D~~~ 206 (762)
-|-- -++ +.|+... -++++++|-++ |-+... ..++.... -.+.|.|+|+||+|...
T Consensus 226 LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 226 LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC
Confidence 5431 122 3444333 25677889764 322221 22333332 25899999999999854
No 350
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=90.03 Aligned_cols=114 Identities=22% Similarity=0.205 Sum_probs=71.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
...|+++|..|||||||+++|. .+.... .+.+-..+|. |..+.. + -.+..+.+.||-|+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT-~Aal~p-------~drLFATLDp---------T~h~a~--L-psg~~vlltDTvGFi 237 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALT-KAALYP-------NDRLFATLDP---------TLHSAH--L-PSGNFVLLTDTVGFI 237 (410)
T ss_pred CceEEEEeecCccHHHHHHHHH-hhhcCc-------cchhheeccc---------hhhhcc--C-CCCcEEEEeechhhh
Confidence 4689999999999999999995 222111 1111112221 111111 1 135788999999974
Q ss_pred -CcHH-------HHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHHcCCC-------EEEEEeCCCCC
Q 004311 152 -DFTV-------EVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-------RLAFINKLDRM 205 (762)
Q Consensus 152 -df~~-------~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~~p-------~iiviNK~D~~ 205 (762)
++-- .+..-+..+|..|-|+|.+++. ..|-..++.-+...++| ++=|=||+|..
T Consensus 238 sdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 238 SDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 2221 2233346789999999998874 56667788888888886 23455777753
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=3e-06 Score=92.59 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=88.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
--||++|++|.|||||+.+|...- +.++-.+...-||+.+ -+..+++|+.+|. |
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~------------------tk~ti~~i~GPiTvvs------gK~RRiTflEcp~--D 123 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRF------------------TKQTIDEIRGPITVVS------GKTRRITFLECPS--D 123 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHH------------------HHhhhhccCCceEEee------cceeEEEEEeChH--H
Confidence 457899999999999999996321 1111112223344433 3457999999993 3
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHHHHHhcc
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRH 222 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~ 222 (762)
...+......||.++|+||++-|..-.|.+.+..+..+|+|. +-|++..|+... ..++..+.+.|..
T Consensus 124 -l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkh 191 (1077)
T COG5192 124 -LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKH 191 (1077)
T ss_pred -HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhh
Confidence 356677789999999999999999999999999999999997 568899998643 3455555555543
No 352
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.29 E-value=3.4e-06 Score=72.17 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=62.8
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccc
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCA 446 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~ 446 (762)
|.+.|.++|..+. |.+..|||.+|++++||++.+.+.+...+|++|.. ...++++|.|||.+++ .++ ++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~----~~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQV----HGKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEE----CCcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 4567777777666 89999999999999999999999888888888873 3567899999999985 454 567
Q ss_pred cCceeec
Q 004311 447 SGDTFTD 453 (762)
Q Consensus 447 ~GdtL~~ 453 (762)
.||.|++
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 7887763
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=3.7e-06 Score=81.23 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCC
Q 004311 157 VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 157 ~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~iiviNK~D~~ 205 (762)
+.+++..+|.+++|+|+..+...+...+.+.+... ++|+++|+||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 46789999999999999988766666666666543 48999999999984
No 354
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.26 E-value=5.1e-06 Score=71.73 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=61.0
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC--C--eEEEcCeEEEeecCcccccccccCCCEEEE--ccc---
Q 004311 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--G--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--- 443 (762)
Q Consensus 374 ~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--- 443 (762)
.+.|..+|..+. |.+..|||.+|++++||++++.+. + ...+|+.|.. +..++++|.|||.+++ .++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEE----CCeECCEECCCCEEEEEEcCCCHH
Confidence 466777777666 999999999999999999999987 3 5678888763 3567999999999984 565
Q ss_pred ccccCceeec
Q 004311 444 DCASGDTFTD 453 (762)
Q Consensus 444 ~~~~GdtL~~ 453 (762)
+++.|+.|++
T Consensus 78 ~i~~G~vl~~ 87 (87)
T cd03694 78 LLRKGMVLVS 87 (87)
T ss_pred HcCCccEEeC
Confidence 4678887763
No 355
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.25 E-value=1.3e-05 Score=91.43 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=71.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|.+|+||||++|+|+........ . ...++|. .......+.+..+++|||||.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vs-----s--------------~~~~TTr-~~ei~~~idG~~L~VIDTPGL 176 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTD-----A--------------FGMGTTS-VQEIEGLVQGVKIRVIDTPGL 176 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccccc-----C--------------CCCCceE-EEEEEEEECCceEEEEECCCC
Confidence 3468999999999999999999764322211 0 0123332 333444567889999999999
Q ss_pred cCcH------HHH----HHHHH--hcCEEEEEEeCCCC-cchhHHHHHHHHHH-cC----CCEEEEEeCCCCCC
Q 004311 151 VDFT------VEV----ERALR--VLDGAILVLCSVGG-VQSQSITVDRQMRR-YE----VPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~------~~~----~~al~--~aD~aIlVvDa~~g-v~~qt~~~~~~~~~-~~----~p~iiviNK~D~~~ 206 (762)
.+.. .++ ...+. .+|++|+|+..... ........++.+.+ +| .-.|||++.+|...
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 7642 222 22333 37888888765422 22233334444322 22 23699999999874
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.23 E-value=4.5e-05 Score=84.63 Aligned_cols=132 Identities=19% Similarity=0.160 Sum_probs=69.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChhh-hhhhcceeecceEE-------------Ee
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------------CA 136 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------------~~ 136 (762)
...|+++|..|+||||++..|......- .+..-+..........+.... ....++.+...... +.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999986432110 011111111000111111111 11123332211100 01
Q ss_pred ecCeeEEEEeCCCCcCcHHHH----HHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 137 WKDYQINIIDTPGHVDFTVEV----ERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~~~~----~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
-.++.+.||||||........ .... ...|-++||+||..|-.. ....+...+.--+.-+++||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 136899999999986544333 2222 236789999999877433 222222222223458899999974
No 357
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.21 E-value=5.2e-06 Score=71.75 Aligned_cols=78 Identities=26% Similarity=0.209 Sum_probs=61.6
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCC--CeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---c
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---D 444 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~ 444 (762)
|.+.|..+|..++ |.+..|||.+|+++.||+|.+.+. +.+.+|+.|.. +..++++|.|||.+++ .++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~----~~~~~~~a~~G~~v~l~l~~~~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEM----FRKTLDEAEAGDNVGVLLRGVKRED 76 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEE----CCcCCCEECCCCEEEEEECCCCHHH
Confidence 3566777776666 899999999999999999998764 55677888763 3567899999999984 565 5
Q ss_pred cccCceeecC
Q 004311 445 CASGDTFTDG 454 (762)
Q Consensus 445 ~~~GdtL~~~ 454 (762)
+..|+.|++.
T Consensus 77 v~rG~vl~~~ 86 (87)
T cd03697 77 VERGMVLAKP 86 (87)
T ss_pred cCCccEEecC
Confidence 6789988864
No 358
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.20 E-value=7.8e-06 Score=69.53 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=60.9
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc-ccccC
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV-DCASG 448 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-~~~~G 448 (762)
|++.|..+|.... |+.+.|||.+|++++||+|++.+.+...+|+.|.. +..+++.|.|||.++| .+- ++.+|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~----~~~~~~~a~aGd~v~l~l~~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIET----FDGELDEAGAGESVTLTLEDEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEE----CCcEeCEEcCCCEEEEEECCccccCCC
Confidence 3556677776554 67899999999999999999999998889999873 2467899999999986 333 56788
Q ss_pred ceee
Q 004311 449 DTFT 452 (762)
Q Consensus 449 dtL~ 452 (762)
+.|+
T Consensus 77 ~vl~ 80 (81)
T cd03695 77 DVIV 80 (81)
T ss_pred CEEe
Confidence 8776
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=7.2e-06 Score=89.46 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC---ceeeeeecCCCccccccCChhhhhh------hcceeecceEE-------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGR---IHEIHEVRGRDGVGAKMDSMDLERE------KGITIQSAATS------- 134 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~---i~~~~~v~~~~~~~~~~d~~~~e~~------~giTi~~~~~~------- 134 (762)
+-.+++++|++|+||||++..|...... ..+.+-+... .+ +. ...|+- .|+.+......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D-~~-R~---ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD-SY-RI---GGHEQLRIFGKILGVPVHAVKDGGDLQLAL 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc-cc-cc---cHHHHHHHHHHHcCCceEecCCcccHHHHH
Confidence 4479999999999999999999754210 0111111111 00 00 011111 24333222111
Q ss_pred EeecCeeEEEEeCCCCcC---cHHHHHHHHHhcC---EEEEEEeCCCCcchhHHHHHHHHHHcCCCE-------EEEEeC
Q 004311 135 CAWKDYQINIIDTPGHVD---FTVEVERALRVLD---GAILVLCSVGGVQSQSITVDRQMRRYEVPR-------LAFINK 201 (762)
Q Consensus 135 ~~~~~~~i~liDTPG~~d---f~~~~~~al~~aD---~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-------iiviNK 201 (762)
-.+.++.+.||||||... +..+....+..++ -.+||++++.+....+..++......++|. =++++|
T Consensus 211 ~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 234678999999999863 3444455555444 459999999987766666666655544432 577899
Q ss_pred CCCC
Q 004311 202 LDRM 205 (762)
Q Consensus 202 ~D~~ 205 (762)
+|-.
T Consensus 291 lDEt 294 (374)
T PRK14722 291 LDEA 294 (374)
T ss_pred cccC
Confidence 9974
No 360
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.18 E-value=9.8e-07 Score=88.14 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=55.5
Q ss_pred cccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChh
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD 119 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~ 119 (762)
.+.+|+..+.+...+...+....+ .-.+++++|.+|+|||||+|+|+.......+. ... ..
T Consensus 102 i~~vSA~~~~gi~eL~~~l~~~l~-------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~---~~~---------~~ 162 (190)
T cd01855 102 VILISAKKGWGVEELINAIKKLAK-------KGGDVYVVGATNVGKSTLINALLKKDNGKKKL---KDL---------LT 162 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh-------cCCcEEEEcCCCCCHHHHHHHHHHhccccccc---ccc---------cc
Confidence 466777777777666554432211 23579999999999999999998654221100 000 00
Q ss_pred hhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 120 LEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 120 ~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
....+|+|.......+.. .+.||||||.
T Consensus 163 ~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 163 TSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 112268888876555432 5899999994
No 361
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.18 E-value=6.7e-06 Score=82.00 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|++||.|.+|||||+..+.. ..+.. +.+ .-+|......-+.+++..++++|.||.+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~---T~Sea---------A~y---------eFTTLtcIpGvi~y~ga~IQllDLPGIie 121 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITS---THSEA---------ASY---------EFTTLTCIPGVIHYNGANIQLLDLPGIIE 121 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhc---chhhh---------hce---------eeeEEEeecceEEecCceEEEecCccccc
Confidence 3599999999999999998832 11110 000 12367777788899999999999999865
Q ss_pred cH-------HHHHHHHHhcCEEEEEEeCCCC
Q 004311 153 FT-------VEVERALRVLDGAILVLCSVGG 176 (762)
Q Consensus 153 f~-------~~~~~al~~aD~aIlVvDa~~g 176 (762)
=. .++....+.||.+++|+||+..
T Consensus 122 GAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 122 GASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 32 2456667889999999999875
No 362
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.17 E-value=9.3e-06 Score=75.07 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
..|+++|.+..|||||+-....... | ...++..|+..--...++.--...+.+||..|+.+
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~------------------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEY------------------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE 81 (205)
T ss_pred EEEEeecccccCceeeehhhhcchh------------------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHh
Confidence 5699999999999999866632110 1 11223344443333333333446788999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHHcCCC--EEEEEeCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRRYEVP--RLAFINKLDR 204 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~~~~p--~iiviNK~D~ 204 (762)
|.....-|...+-++++++|-+..-+.....- .++++..+.- .|++.+|.|.
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHh
Confidence 99998888888889999999987766555544 4677776644 3788899996
No 363
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=0.00011 Score=78.77 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=54.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe----------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---------------- 136 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 136 (762)
..++|+|.||+|||||+|+|......+.. + +=+||+.......
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aN---------------Y------PF~TIePN~Giv~v~d~rl~~L~~~~~c~ 61 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIAN---------------Y------PFCTIEPNVGVVYVPDCRLDELAEIVKCP 61 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccC---------------C------CcccccCCeeEEecCchHHHHHHHhcCCC
Confidence 36899999999999999999543322111 0 1223333322221
Q ss_pred --ecCeeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004311 137 --WKDYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 137 --~~~~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~~ 175 (762)
+-...+.|+|.+|.+. +......-+|.+|+++.||||.+
T Consensus 62 ~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 62 PKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 1124689999999853 45566778899999999999973
No 364
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.15 E-value=1.6e-06 Score=83.90 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=49.9
Q ss_pred ccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhh
Q 004311 41 FHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDL 120 (762)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~ 120 (762)
+++|+..+.+...+.+.+...... .....-.+|+++|.+|+|||||+|+|+...... +.
T Consensus 73 ~~iSa~~~~~~~~L~~~l~~~~~~--~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~-----~~-------------- 131 (157)
T cd01858 73 FHASINNPFGKGSLIQLLRQFSKL--HSDKKQISVGFIGYPNVGKSSIINTLRSKKVCK-----VA-------------- 131 (157)
T ss_pred EEeeccccccHHHHHHHHHHHHhh--hccccceEEEEEeCCCCChHHHHHHHhcCCcee-----eC--------------
Confidence 455666666665555544321110 011223579999999999999999997432211 11
Q ss_pred hhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 121 EREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 121 e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
..+|+|....... . +..+.|+||||.
T Consensus 132 -~~~g~T~~~~~~~--~-~~~~~liDtPGi 157 (157)
T cd01858 132 -PIPGETKVWQYIT--L-MKRIYLIDCPGV 157 (157)
T ss_pred -CCCCeeEeEEEEE--c-CCCEEEEECcCC
Confidence 1256666543322 2 345899999994
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.15 E-value=5.3e-06 Score=81.43 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=44.1
Q ss_pred CCCCc-CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~-df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
-|||. ....++..++..||.+++|+|+.++.......+.... .++|+++++||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 37773 5567788999999999999999887665555444433 368999999999984
No 366
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.14 E-value=5.6e-05 Score=69.91 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecc-eEEEeec---CeeEEEEe
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA-ATSCAWK---DYQINIID 146 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~---~~~i~liD 146 (762)
+.-.|.++|.-++|||.+++.|++-...+... .. -|+.-. ...++.+ ...+.|.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e--~~-------------------pTiEDiY~~svet~rgarE~l~lyD 66 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE--LH-------------------PTIEDIYVASVETDRGAREQLRLYD 66 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc--cc-------------------cchhhheeEeeecCCChhheEEEee
Confidence 34568999999999999999999865543220 00 011110 1112211 24789999
Q ss_pred CCCCcCcHHHHH-HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVE-RALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~-~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
|.|..+...+.. .++.-+|+.+||.|..+....|-.+.+..-.. ..+|+++..||.|+.
T Consensus 67 TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 67 TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 999999866664 56688999999999998877777666654332 357999999999985
No 367
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.13 E-value=2.2e-05 Score=83.08 Aligned_cols=137 Identities=17% Similarity=0.229 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
-||.++|..|.|||||+|.|+........ . ..+.......+..++......+.-++ ..+++|||||+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~-----~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED-----S------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS--------------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc-----c------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 48999999999999999999754322111 0 00000011223334444434443333 57899999997
Q ss_pred cCcH-------------HH-HHHHH-------------HhcCEEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004311 151 VDFT-------------VE-VERAL-------------RVLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 151 ~df~-------------~~-~~~al-------------~~aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~~p~iiviNK~ 202 (762)
.+.. .. ...++ ...|+||+.|+++ .|+...+...++.+.. .+++|.|+.|.
T Consensus 74 Gd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKa 152 (281)
T PF00735_consen 74 GDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKA 152 (281)
T ss_dssp SSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTG
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecc
Confidence 4321 10 11111 2357999999986 6788888877777664 48899999999
Q ss_pred CCCCCC-hhHHHHHHHHHhc
Q 004311 203 DRMGAD-PWKVLDQARSKLR 221 (762)
Q Consensus 203 D~~~~~-~~~~~~~i~~~l~ 221 (762)
|....+ ....-+.+++.+.
T Consensus 153 D~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 153 DTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp GGS-HHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 986532 2223344444443
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.11 E-value=2.8e-06 Score=81.92 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=55.6
Q ss_pred cccccccccccccccccccCCCCcch------hhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWW------KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (762)
.+.+|+.++.+...+.+.+....... ........+++++|++|+|||||+|+|+...... +..
T Consensus 62 ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~-----~~~------ 130 (155)
T cd01849 62 PFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLK-----VGN------ 130 (155)
T ss_pred EEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccccc-----ccC------
Confidence 46677888888776665442211000 0012345789999999999999999997543221 111
Q ss_pred ccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
.+|+|.......+ +..++|+||||.
T Consensus 131 ---------~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 131 ---------VPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ---------CCCcccceEEEEe---cCCEEEEECCCC
Confidence 2566776655443 256999999994
No 369
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.11 E-value=8.6e-06 Score=81.34 Aligned_cols=54 Identities=11% Similarity=-0.154 Sum_probs=40.7
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+..|...+..+++.+|++++|+|+.+........++. ...++|+++|+||+|+.
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 3346788888999999999999998765443333322 23578999999999985
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.10 E-value=7.1e-06 Score=87.00 Aligned_cols=56 Identities=30% Similarity=0.389 Sum_probs=45.1
Q ss_pred CCCc-CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 148 PGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~-df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
|||. ....++...+..+|++|+|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 8885 4567788999999999999999887766665555544 378999999999984
No 371
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.09 E-value=6.7e-05 Score=74.09 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=61.4
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQAR 217 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~ 217 (762)
+.+.+.+||||+... .....++..+|.+++|+.+...-.......++.+.+.++|..+|+||+|.... ..+.+.+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~-~~~~~~~~~ 167 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE-IAEEIEDYC 167 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc-hHHHHHHHH
Confidence 678999999997643 35677889999999999998766666778888888889999999999997533 223334444
Q ss_pred HHhc
Q 004311 218 SKLR 221 (762)
Q Consensus 218 ~~l~ 221 (762)
+.++
T Consensus 168 ~~~~ 171 (179)
T cd03110 168 EEEG 171 (179)
T ss_pred HHcC
Confidence 4444
No 372
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.09 E-value=2.4e-06 Score=93.92 Aligned_cols=155 Identities=10% Similarity=0.091 Sum_probs=83.8
Q ss_pred ccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhh
Q 004311 41 FHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDL 120 (762)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~ 120 (762)
+.+|+..+.+..++...+... .+-++++++|.+|+|||||+|+|+.......+...++.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~--------~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~------------- 189 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKA--------RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSP------------- 189 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHH--------hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecC-------------
Confidence 445666666655554433211 11268999999999999999999865432211111111
Q ss_pred hhhhcceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHH-----------HhcCEEEEEEeCCCCcchhHHHHHHHHH
Q 004311 121 EREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERAL-----------RVLDGAILVLCSVGGVQSQSITVDRQMR 189 (762)
Q Consensus 121 e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al-----------~~aD~aIlVvDa~~gv~~qt~~~~~~~~ 189 (762)
.+|+|....... . +..+.++||||..... .+...+ .......+.+|....+......-+....
T Consensus 190 --~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~ 263 (360)
T TIGR03597 190 --FPGTTLDLIEIP--L-DDGHSLYDTPGIINSH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLK 263 (360)
T ss_pred --CCCeEeeEEEEE--e-CCCCEEEECCCCCChh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEec
Confidence 278887755433 3 2346899999986532 121111 2245566777765543322221122222
Q ss_pred HcCCCEEEEEeCCCCCCC-ChhHHHHHHHHHhcc
Q 004311 190 RYEVPRLAFINKLDRMGA-DPWKVLDQARSKLRH 222 (762)
Q Consensus 190 ~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l~~ 222 (762)
..+..+.++++|-+.... +.++..+-+.+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 264 GEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred CCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 234456777777776543 333444444555443
No 373
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.09 E-value=5.8e-05 Score=80.23 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
-||-++|..|.||||++|.|+...-.- . ...-+....-..+++.+......+.-++ ..+++|||||.
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~--------~---~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVD--------E---TEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccC--------C---CCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 589999999999999999998762111 1 0001111111335555665555555555 57889999999
Q ss_pred cCcHHH--------------HHHHH-------H-------hcCEEEEEEeC-CCCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004311 151 VDFTVE--------------VERAL-------R-------VLDGAILVLCS-VGGVQSQSITVDRQMRRYEVPRLAFINK 201 (762)
Q Consensus 151 ~df~~~--------------~~~al-------~-------~aD~aIlVvDa-~~gv~~qt~~~~~~~~~~~~p~iiviNK 201 (762)
.||... ...++ | ..++|++.+-. .+|+...+.+.++.+.+ .+.+|.||-|
T Consensus 93 GD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~K 171 (373)
T COG5019 93 GDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAK 171 (373)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeec
Confidence 765221 11222 1 25688888886 47889988888777664 5778999999
Q ss_pred CCCCCCC-hhHHHHHHHHHhccceeeeeecCC
Q 004311 202 LDRMGAD-PWKVLDQARSKLRHHCAAVQVPMG 232 (762)
Q Consensus 202 ~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~ 232 (762)
.|....+ ....-+.+++.+.....++..|..
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd 203 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQYNIPVFDPYD 203 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence 9987543 334445556666555555544543
No 374
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=1.4e-05 Score=83.83 Aligned_cols=136 Identities=21% Similarity=0.173 Sum_probs=93.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceE-EEe----e--------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT-SCA----W-------- 137 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~-~~~----~-------- 137 (762)
.-+-|.++|.-..||||+++.|+...-.--+.|.-...+.+..+|.-..++.-+|.+...... .|. +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 345689999999999999999986442211111111122234445555555555655433311 110 0
Q ss_pred -----cC---eeEEEEeCCCC-----------cCcHHHHHHHHHhcCEEEEEEeCCC-CcchhHHHHHHHHHHcCCCEEE
Q 004311 138 -----KD---YQINIIDTPGH-----------VDFTVEVERALRVLDGAILVLCSVG-GVQSQSITVDRQMRRYEVPRLA 197 (762)
Q Consensus 138 -----~~---~~i~liDTPG~-----------~df~~~~~~al~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~~p~ii 197 (762)
.+ ..+++|||||. .||.....-....+|.++|++|+.. .+...+.+++..++...-.+=|
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 01 47999999997 4788888888899999999999864 5778888999999888888889
Q ss_pred EEeCCCCCC
Q 004311 198 FINKLDRMG 206 (762)
Q Consensus 198 viNK~D~~~ 206 (762)
|+||.|...
T Consensus 217 VLNKADqVd 225 (532)
T KOG1954|consen 217 VLNKADQVD 225 (532)
T ss_pred EeccccccC
Confidence 999999863
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=2.7e-05 Score=76.44 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=42.8
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHH------HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERAL------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al------~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.++.+.+|||||...+.......+ ...|.+++|+|+..+.... ...+......++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCC
Confidence 467899999999865433332222 2389999999996543222 333344344453 568889999853
No 376
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.00 E-value=2.4e-05 Score=75.40 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=33.3
Q ss_pred CEEEEEEeCCCCcchhHHHHH-HHHHHcCCCEEEEEeCCCCC
Q 004311 165 DGAILVLCSVGGVQSQSITVD-RQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~-~~~~~~~~p~iiviNK~D~~ 205 (762)
|.+|+|+|+.++.......+. ..+...++|+++|+||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887766665555 45666789999999999984
No 377
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.99 E-value=1.2e-05 Score=79.36 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=87.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGH 150 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 150 (762)
-|.|.++|..|+|||++=..+...-.+- +-+..|-||+....++.+-| .-+++||..|+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~--------------------D~~rlg~tidveHsh~RflGnl~LnlwDcGgq 63 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR--------------------DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 63 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh--------------------hhhccCCcceeeehhhhhhhhheeehhccCCc
Confidence 4789999999999999866553211110 11225667777777666644 78999999999
Q ss_pred cCcHHHHH-----HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc------CCCEEEEEeCCCCCCCChhHHHHHH
Q 004311 151 VDFTVEVE-----RALRVLDGAILVLCSVGGVQSQSITVDRQMRRY------EVPRLAFINKLDRMGADPWKVLDQA 216 (762)
Q Consensus 151 ~df~~~~~-----~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~------~~p~iiviNK~D~~~~~~~~~~~~i 216 (762)
..|..... ..++..++.|.|+|+.......+....+.|.+. ...+++.+.|||+...+..+.+-+.
T Consensus 64 e~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~ 140 (295)
T KOG3886|consen 64 EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQR 140 (295)
T ss_pred HHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHH
Confidence 87766554 357889999999999876666665555554332 3346899999999887765544333
No 378
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.97 E-value=3.3e-05 Score=73.82 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=41.0
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D 203 (762)
.++.+.||||||.. .....+++.||.+|+|+....+.....+.. .-+..--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~----~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA----GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh----hHhhhcCEEEEeCCC
Confidence 36899999999964 344569999999999998874333222222 222334599999998
No 379
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.97 E-value=0.00036 Score=78.11 Aligned_cols=212 Identities=19% Similarity=0.184 Sum_probs=105.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChh-hhhhhcceeecceEE----------E-ee
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAATS----------C-AW 137 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~~~----------~-~~ 137 (762)
..+.|.++|.+|+||||++..|......- .+..-+..........+... .-...|+.+...... + ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999999886432111 11111111100000000000 011123322211000 0 11
Q ss_pred cCeeEEEEeCCCCcCcHHHH------HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCCCCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEV------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLDRMGAD 208 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~------~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~-iiviNK~D~~~~~ 208 (762)
.++.+.||||||...+.... ..++..+|.+++|+|+..|. ..+.++..+ .+++ -+++||+|... .
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~a-~ 247 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGTA-K 247 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCCC-c
Confidence 34589999999986654433 23455689999999998862 223333333 3454 67899999642 1
Q ss_pred hhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEec--CCChhhHHHHHH--HHHHHHHHHh
Q 004311 209 PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTG--EVPADMETFVAE--KRRELIELVS 284 (762)
Q Consensus 209 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~--~i~~~~~~~~~~--~~~~l~e~~~ 284 (762)
.- .+-++....+.+... . ..|+.+... --|+.+...+.. ....|+|.+.
T Consensus 248 ~G-~~ls~~~~~~~Pi~f------------------------i--g~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~ 300 (437)
T PRK00771 248 GG-GALSAVAETGAPIKF------------------------I--GTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVE 300 (437)
T ss_pred cc-HHHHHHHHHCcCEEE------------------------E--ecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHH
Confidence 11 122222333322211 1 013333111 124555555543 3445555554
Q ss_pred cC-CH----HHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004311 285 EV-DD----KLGDMFLSDEPISSGDLEEAIRRATVAR 316 (762)
Q Consensus 285 ~~-dd----~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (762)
+. |+ ++.+++. ...++-+++.+.++....++
T Consensus 301 ~~~~~~~~~~~~~~~~-~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 301 EALDEEEEEKDVEKMM-KGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HhhhHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHhcC
Confidence 43 22 2344433 35788888888888766555
No 380
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=6.7e-05 Score=84.91 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=83.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceee-------eeecCCCcccc--ccCChhhhhhhccee-------------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEI-------HEVRGRDGVGA--KMDSMDLEREKGITI------------- 128 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~-------~~v~~~~~~~~--~~d~~~~e~~~giTi------------- 128 (762)
..-.|+|.|..++||||++|+||.+.-..... -+|.+.++-.. .++-. .|...-.|+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCC-cccccHHHHhHHHHhcCccccc
Confidence 34589999999999999999999765433221 11221111011 11110 011110111
Q ss_pred -ecceEEEeecC-------eeEEEEeCCCC---cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EE
Q 004311 129 -QSAATSCAWKD-------YQINIIDTPGH---VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RL 196 (762)
Q Consensus 129 -~~~~~~~~~~~-------~~i~liDTPG~---~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~i 196 (762)
......+-|++ ..+.+||.||. ..+...+..-...+|+.|+|+.|....+......+..+.+. +| ++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 11223333443 37899999997 46677777888899999999999876655555566666655 66 56
Q ss_pred EEEeCCCCCCCC
Q 004311 197 AFINKLDRMGAD 208 (762)
Q Consensus 197 iviNK~D~~~~~ 208 (762)
|+.||||.....
T Consensus 266 IlnnkwDasase 277 (749)
T KOG0448|consen 266 ILNNKWDASASE 277 (749)
T ss_pred EEechhhhhccc
Confidence 777899986443
No 381
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.95 E-value=0.00023 Score=69.88 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=62.0
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHH
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSK 219 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~ 219 (762)
.+.+|||||..+ .....++..+|.+|+|+++...-...+...++.+...+.+ ..+++|++|.......+.++++.+.
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 899999998755 3567789999999999999877666666777777766665 4689999987654444556777777
Q ss_pred hccce
Q 004311 220 LRHHC 224 (762)
Q Consensus 220 l~~~~ 224 (762)
++...
T Consensus 142 ~~~~v 146 (179)
T cd02036 142 LGVPL 146 (179)
T ss_pred hCCCE
Confidence 76544
No 382
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.89 E-value=2.1e-05 Score=83.84 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=44.5
Q ss_pred CCCCc-CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~-df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
=|||. .-..++...+..+|++|+|+|+..+.......+..... ++|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 48885 33566788899999999999998887766655544432 79999999999984
No 383
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.88 E-value=9.4e-06 Score=77.89 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.++++|++|+|||||+|+|+.....- .+.++.. ..+-+.+|.... .+.+. ....+|||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~--t~~is~~-----------~~rGkHTTt~~~--l~~l~-~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK--TGEISEK-----------TGRGKHTTTHRE--LFPLP-DGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S-------------------------SEE--EEEET-TSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh--hhhhhcc-----------cCCCcccCCCee--EEecC-CCcEEEECCCCCc
Confidence 789999999999999999997542211 1111111 011133344333 33332 2568999999877
Q ss_pred cH
Q 004311 153 FT 154 (762)
Q Consensus 153 f~ 154 (762)
|.
T Consensus 100 ~~ 101 (161)
T PF03193_consen 100 FG 101 (161)
T ss_dssp --
T ss_pred cc
Confidence 64
No 384
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.87 E-value=2e-05 Score=77.28 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=39.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
..+++++|.+|+|||||+|+|+...... +. ..+|+|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~-----~~---------------~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACN-----VG---------------ATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccce-----ec---------------CCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3579999999999999999996432211 11 12677876544433 246899999994
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.87 E-value=0.00013 Score=77.07 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCce-eeeeecCCCcccc-ccCCh-hhhhhhcceeecc-------eE------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIH-EIHEVRGRDGVGA-KMDSM-DLEREKGITIQSA-------AT------ 133 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~-~~~~v~~~~~~~~-~~d~~-~~e~~~giTi~~~-------~~------ 133 (762)
.+.+.|+++|++|+||||++..|........ +..-++ .+.+.. ..+.. ..-...|+.+... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~-~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA-GDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe-CCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999998864322111 111111 100000 00000 0001223322110 00
Q ss_pred EEeecCeeEEEEeCCCCcCcHHHHH-------HHHH-----hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004311 134 SCAWKDYQINIIDTPGHVDFTVEVE-------RALR-----VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINK 201 (762)
Q Consensus 134 ~~~~~~~~i~liDTPG~~df~~~~~-------~al~-----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK 201 (762)
....+++.+.||||||......... +... .+|..++|+|+..|- .+........+.--+.-+++||
T Consensus 149 ~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEEEEc
Confidence 0012568999999999865443332 1222 289999999997652 2222222222111235789999
Q ss_pred CCCC
Q 004311 202 LDRM 205 (762)
Q Consensus 202 ~D~~ 205 (762)
+|..
T Consensus 227 lDe~ 230 (272)
T TIGR00064 227 LDGT 230 (272)
T ss_pred cCCC
Confidence 9974
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=97.86 E-value=1.6e-05 Score=86.53 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=49.7
Q ss_pred cccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChh
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD 119 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~ 119 (762)
.+.+|+.++.+...|.+.+. . ..++|+|.+|+|||||+|+|+...... .+.+.+.
T Consensus 152 v~~iSA~tg~GI~eL~~~L~----------~--ki~v~iG~SgVGKSSLIN~L~~~~~~~--t~~vs~~----------- 206 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLR----------N--KITVVAGPSGVGKSSLINRLIPDVELR--VGKVSGK----------- 206 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhc----------c--ceEEEEeCCCCCHHHHHHHHcCccccc--cccccCC-----------
Confidence 45556666666555444332 1 237999999999999999997443221 1122221
Q ss_pred hhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH
Q 004311 120 LEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (762)
Q Consensus 120 ~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 154 (762)
..+-+.+|... ..+...+. ..||||||...|.
T Consensus 207 ~~rGrHTT~~~--~l~~l~~g-~~liDTPG~~~~~ 238 (352)
T PRK12289 207 LGRGRHTTRHV--ELFELPNG-GLLADTPGFNQPD 238 (352)
T ss_pred CCCCCCcCcee--EEEECCCC-cEEEeCCCccccc
Confidence 01113345544 33333221 2799999987654
No 387
>PRK12288 GTPase RsgA; Reviewed
Probab=97.85 E-value=1.1e-05 Score=87.69 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
.++|+|.+|+|||||+|+|+..... ..+.++.. ..+-+.+|.......+..+ ..||||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~--~t~~is~~-----------~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI--LVGDVSDN-----------SGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce--eeccccCc-----------CCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4799999999999999999754322 22222221 0112334544444333222 359999999876
Q ss_pred H
Q 004311 154 T 154 (762)
Q Consensus 154 ~ 154 (762)
.
T Consensus 271 ~ 271 (347)
T PRK12288 271 G 271 (347)
T ss_pred c
Confidence 4
No 388
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.85 E-value=0.00011 Score=79.19 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=68.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccc-cccCCh-hhhhhhcceeecceE-------------EE
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVG-AKMDSM-DLEREKGITIQSAAT-------------SC 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~-~~~d~~-~~e~~~giTi~~~~~-------------~~ 135 (762)
....|+++|.+|+||||++..|..........--+-+.+.+. ...+.. .....+|+.+..... ..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999865332111100011111100 000000 111223443321110 00
Q ss_pred eecCeeEEEEeCCCCcCcH----HHHHHHHH--------hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004311 136 AWKDYQINIIDTPGHVDFT----VEVERALR--------VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 136 ~~~~~~i~liDTPG~~df~----~~~~~al~--------~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D 203 (762)
...++.+.||||||...+. .++....+ ..|..++|+||..|-.... . .....+.--+.-+++||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~-a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-Q-AKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-H-HHHHHhhCCCCEEEEECCC
Confidence 1256899999999985433 33333333 3577899999997643222 1 1111111123479999999
Q ss_pred CC
Q 004311 204 RM 205 (762)
Q Consensus 204 ~~ 205 (762)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 53
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.85 E-value=7.8e-05 Score=70.62 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCC
Q 004311 155 VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 155 ~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~iiviNK~D~~ 205 (762)
.++.+++..+|++++|+|+..+...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5678899999999999999998888877777777766 89999999999984
No 390
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=2.3e-05 Score=75.26 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
-++.++++|..+.||||++++.+. |...+... ..-|..+......-..+..+|+.|||.|.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt--geFe~~y~-----------------at~Gv~~~pl~f~tn~g~irf~~wdtagq 69 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT--GEFEKTYP-----------------ATLGVEVHPLLFDTNRGQIRFNVWDTAGQ 69 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc--ccceeccc-----------------CcceeEEeeeeeecccCcEEEEeeecccc
Confidence 478899999999999999999863 22211100 00122222211111122378999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH--H-HHcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ--M-RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~--~-~~~~~p~iiviNK~D~~ 205 (762)
+.|...-..+.-..-+||+++|...-+..+....|.. + ...++|++++.||.|..
T Consensus 70 Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 70 EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 9998877777777889999999998877776655543 2 23579999999999974
No 391
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.84 E-value=0.00013 Score=70.58 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=39.4
Q ss_pred CeeEEEEeCCCCcCcHHHH--------HHHHHhcCEEEEEEeCCCCcchh--HHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEV--------ERALRVLDGAILVLCSVGGVQSQ--SITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~--------~~al~~aD~aIlVvDa~~gv~~q--t~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
..++.+|||||..+-...+ ..+...+|.++.|+|+....... ......|+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4678999999987533322 22334589999999997543321 11222333332 3889999996
No 392
>PRK13796 GTPase YqeH; Provisional
Probab=97.83 E-value=2e-05 Score=86.84 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=52.7
Q ss_pred cccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChh
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD 119 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~ 119 (762)
.+.+|+..+.+...+.+.+... .+-+++.++|.+|+|||||+|+|+.......+...+.
T Consensus 136 v~~vSAk~g~gI~eL~~~I~~~--------~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s------------- 194 (365)
T PRK13796 136 VVLISAQKGHGIDELLEAIEKY--------REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTS------------- 194 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHh--------cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEec-------------
Confidence 3455666666665554444221 1236899999999999999999986431111111111
Q ss_pred hhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 120 LEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 120 ~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+|.......+ .+ ...++||||..
T Consensus 195 --~~pGTT~~~~~~~l--~~-~~~l~DTPGi~ 221 (365)
T PRK13796 195 --RFPGTTLDKIEIPL--DD-GSFLYDTPGII 221 (365)
T ss_pred --CCCCccceeEEEEc--CC-CcEEEECCCcc
Confidence 22788887655443 22 25899999985
No 393
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.78 E-value=3.3e-05 Score=80.35 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.++++|++|+|||||+|+|+...... .+++... ..+-+.+|.......+ .+ ..||||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~--t~~i~~~-----------~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQ--VNDISSK-----------LGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcc--ccceecc-----------CCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 468999999999999999998543221 1122211 0112446666555444 22 38999999876
Q ss_pred c
Q 004311 153 F 153 (762)
Q Consensus 153 f 153 (762)
|
T Consensus 184 ~ 184 (245)
T TIGR00157 184 F 184 (245)
T ss_pred c
Confidence 5
No 394
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.76 E-value=2.8e-05 Score=82.47 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=52.7
Q ss_pred cccccccccccccccccccCCCCcchhhc------cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKES------MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (762)
.+.+|+..+.+...+...+..+.+..... .....+++++|.+|+|||||+|+|+...... +.
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~-----~~------- 147 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAK-----VG------- 147 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccc-----cC-------
Confidence 35667777777666655443322211100 1234579999999999999999996422111 11
Q ss_pred ccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
..+|+|...... ... ..+.|+||||.
T Consensus 148 --------~~~g~T~~~~~~--~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 148 --------NRPGVTKGQQWI--KLS-DGLELLDTPGI 173 (276)
T ss_pred --------CCCCeecceEEE--EeC-CCEEEEECCCc
Confidence 125667665433 332 36899999998
No 395
>PRK10867 signal recognition particle protein; Provisional
Probab=97.74 E-value=0.0009 Score=74.84 Aligned_cols=209 Identities=19% Similarity=0.212 Sum_probs=102.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCccccccCChh-hhhhhcceeecce-----E--------
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-----T-------- 133 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-----~-------- 133 (762)
...|.++|.+|+||||++..|.... |.. ..-++.........+... .-...|+.+.... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~k--V~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKK--VLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCc--EEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 5678999999999999888775421 221 111111100000000000 0011233222110 0
Q ss_pred EEeecCeeEEEEeCCCCcCcHHH----HHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCCCC
Q 004311 134 SCAWKDYQINIIDTPGHVDFTVE----VERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLDR 204 (762)
Q Consensus 134 ~~~~~~~~i~liDTPG~~df~~~----~~~a--l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~-iiviNK~D~ 204 (762)
.....++.+.||||||....... +... .-..|.+++|+|+..| | ....++..+ .+++ -+++||+|-
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred HHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccC
Confidence 01124578999999996543222 2221 1246888999998654 2 222333222 3443 678899996
Q ss_pred CCCChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEe--cCCChhhHHHHHH--HHHHHH
Q 004311 205 MGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT--GEVPADMETFVAE--KRRELI 280 (762)
Q Consensus 205 ~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~--~~i~~~~~~~~~~--~~~~l~ 280 (762)
... .-.+-++...++.+...+. .|+.+.. .--|+.+...+.. -...|+
T Consensus 253 ~~r--gG~alsi~~~~~~PI~fig--------------------------~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~ 304 (433)
T PRK10867 253 DAR--GGAALSIRAVTGKPIKFIG--------------------------TGEKLDDLEPFHPDRMASRILGMGDVLSLI 304 (433)
T ss_pred ccc--ccHHHHHHHHHCcCEEEEe--------------------------CCCccccCccCCHHHHHHHHhCCCChHHHH
Confidence 321 1224445555553322111 1222210 0114455555543 334556
Q ss_pred HHHhcC-C----HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004311 281 ELVSEV-D----DKLGDMFLSDEPISSGDLEEAIRRATVAR 316 (762)
Q Consensus 281 e~~~~~-d----d~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (762)
|.+.+. | ++++++... ..++-+++.+.++....++
T Consensus 305 e~~~~~~~~~~~~~~~~~~~~-g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 305 EKAQEVVDEEKAEKLAKKLKK-GKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred HHHHHhhCHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 655442 2 234555555 4688888888888766555
No 396
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.74 E-value=0.00022 Score=61.13 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=56.2
Q ss_pred EEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCC---eEEEcCeEEEeecCcccccccccCCCEEEE--ccc-ccccC
Q 004311 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV-DCASG 448 (762)
Q Consensus 376 ~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-~~~~G 448 (762)
.|..+|.... |.++.+||.+|++++|+.+.+.+.+ .+-+|..|.. ....+++|.+|+-|+| .++ +.+.|
T Consensus 4 ~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~----~~~~v~~a~~G~ecgi~l~~~~d~~~G 79 (84)
T cd03692 4 EVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKR----FKDDVKEVKKGYECGITLENFNDIKVG 79 (84)
T ss_pred EEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEE----cCcccCEECCCCEEEEEEeCcccCCCC
Confidence 3444444444 8899999999999999999999988 4457777773 3568999999999985 456 77888
Q ss_pred cee
Q 004311 449 DTF 451 (762)
Q Consensus 449 dtL 451 (762)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 876
No 397
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.73 E-value=9.9e-05 Score=82.29 Aligned_cols=115 Identities=23% Similarity=0.187 Sum_probs=73.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
.+| |+++|.-|+|||||+-+|+..+-.-. |... + .-|++- ..+.-......++||+-.
T Consensus 9 dVR-IvliGD~G~GKtSLImSL~~eef~~~----VP~r------l--------~~i~IP---advtPe~vpt~ivD~ss~ 66 (625)
T KOG1707|consen 9 DVR-IVLIGDEGVGKTSLIMSLLEEEFVDA----VPRR------L--------PRILIP---ADVTPENVPTSIVDTSSD 66 (625)
T ss_pred ceE-EEEECCCCccHHHHHHHHHhhhcccc----cccc------C--------CccccC---CccCcCcCceEEEecccc
Confidence 444 89999999999999999976543211 1110 0 112322 111223345899999977
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchh---H--HHHHHHHH--HcCCCEEEEEeCCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ---S--ITVDRQMR--RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~q---t--~~~~~~~~--~~~~p~iiviNK~D~~~~ 207 (762)
.+-...+..-++.||++++|.++++.-+.. + .-++++.. -.++|+|+|.||.|....
T Consensus 67 ~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 67 SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 776667788899999999999887632211 1 11222221 147899999999998643
No 398
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00051 Score=73.78 Aligned_cols=142 Identities=15% Similarity=0.245 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
-|+-++|..|.|||||+|.|+...-.-. . .....+.+..+..++......++-+| ..+++|||||.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~-----------~-~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGN-----------R-EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCC-----------c-ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 5899999999999999999976511100 0 00111222223444444444444444 56888999998
Q ss_pred cCcHH--------------HHHHHH-----------H--hcCEEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004311 151 VDFTV--------------EVERAL-----------R--VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 151 ~df~~--------------~~~~al-----------~--~aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~~p~iiviNK~ 202 (762)
.|+.. ....++ . ..++|++-|... +|+.+.+....+.+. ..+.+|.||-|.
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKA 168 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeecc
Confidence 65421 112222 1 467899999864 678888888777665 368889999999
Q ss_pred CCCCCCh-hHHHHHHHHHhccceeee
Q 004311 203 DRMGADP-WKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 203 D~~~~~~-~~~~~~i~~~l~~~~~~~ 227 (762)
|....+. ....+.+.+.+......+
T Consensus 169 D~lT~~El~~~K~~I~~~i~~~nI~v 194 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRIRQDIEEHNIKV 194 (366)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcce
Confidence 9876543 344455666666555554
No 399
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.71 E-value=0.0006 Score=68.00 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhh-cceeecceEEEeecC--eeEEEEeCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREK-GITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~-giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
-||-++|.+|.|||||+|.|... ...++ ...|. ..|+-+ .+.+.+....++-++ .++++|||||
T Consensus 47 FNIMVVgqSglgkstlinTlf~s-~v~~~-----------s~~~~-~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKS-HVSDS-----------SSSDN-SAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHH-HHhhc-----------cCCCc-ccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 69999999999999999998532 22211 01111 111222 223444444444444 5789999999
Q ss_pred CcCcHH-------------H-HHHHHH--------------hcCEEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEe
Q 004311 150 HVDFTV-------------E-VERALR--------------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFIN 200 (762)
Q Consensus 150 ~~df~~-------------~-~~~al~--------------~aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~~p~iiviN 200 (762)
+-|+.. + -..+|+ .+.+|++-|.++ +...+-+.+.++.+-+ -+.++-|+-
T Consensus 114 fGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIa 192 (336)
T KOG1547|consen 114 FGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIA 192 (336)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEe
Confidence 865421 1 122221 245788888775 3355556666555443 255788999
Q ss_pred CCCCCCCChh-HHHHHHHHHhcccee
Q 004311 201 KLDRMGADPW-KVLDQARSKLRHHCA 225 (762)
Q Consensus 201 K~D~~~~~~~-~~~~~i~~~l~~~~~ 225 (762)
|.|....+.. .--+.+++.|..+..
T Consensus 193 kaDtlTleEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 193 KADTLTLEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred ecccccHHHHHHHHHHHHHHHHhcCc
Confidence 9998655433 334555666655443
No 400
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.68 E-value=3e-05 Score=76.08 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=52.2
Q ss_pred cccccccccccccccccccCCCCc----ch-hhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccc
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEP----WW-KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAK 114 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~ 114 (762)
.+.+|+.+..+...+.+.+....+ .. ........+++++|.+|+|||||+|+|+...... +..
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~-----~~~------- 145 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK-----VGN------- 145 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee-----ecC-------
Confidence 355676666666555544432211 00 0112234689999999999999999996432210 111
Q ss_pred cCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 115 MDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 115 ~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
..|+|.......+. ..+.+|||||.
T Consensus 146 --------~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 146 --------KPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred --------CCCEEeeeEEEEec---CCEEEEECCCC
Confidence 14566665544432 56899999996
No 401
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.68 E-value=0.0016 Score=72.86 Aligned_cols=212 Identities=19% Similarity=0.235 Sum_probs=103.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh----cCCceeeeeecCCCccccccCChhh-hhhhcceeecceE------------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY----TGRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAAT------------ 133 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~----~g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~------------ 133 (762)
+...|.++|++|+||||++-.|... .|. +..-++.........+.... -...|+.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~--kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK--KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC--eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3467899999999999998888643 122 11111111000000000000 0111222211100
Q ss_pred -EEeecCeeEEEEeCCCCcCcHHHHHHH------HHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004311 134 -SCAWKDYQINIIDTPGHVDFTVEVERA------LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (762)
Q Consensus 134 -~~~~~~~~i~liDTPG~~df~~~~~~a------l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (762)
....+++.+.||||||........... .-..|.++||+|+..| ........... ..+++ =+++||+|..
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGD 252 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCc
Confidence 011245789999999975443332221 2347899999999754 12222222222 23443 5779999953
Q ss_pred CCChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEe--cCCChhhHHHHHH--HHHHHHH
Q 004311 206 GADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT--GEVPADMETFVAE--KRRELIE 281 (762)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~--~~i~~~~~~~~~~--~~~~l~e 281 (762)
.. .-.+.++...++.+...+. .|+.+.. .--|+.+...+.. -...|+|
T Consensus 253 ~~--~G~~lsi~~~~~~PI~fi~--------------------------~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e 304 (428)
T TIGR00959 253 AR--GGAALSVRSVTGKPIKFIG--------------------------VGEKIDDLEPFHPERMASRILGMGDILSLVE 304 (428)
T ss_pred cc--ccHHHHHHHHHCcCEEEEe--------------------------CCCChhhCccCCHHHHHHHHhCCCChHHHHH
Confidence 21 1224455555553332111 1221110 0114455555543 3345555
Q ss_pred HHhcC-CH----HHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004311 282 LVSEV-DD----KLGDMFLSDEPISSGDLEEAIRRATVAR 316 (762)
Q Consensus 282 ~~~~~-dd----~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (762)
.+.+. ++ +++++... ..++-+++.+.++....++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 305 KAQEVVDEEEAKKLAEKMKK-GQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred HHHHhhCHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 55442 22 34555443 5688888888887665554
No 402
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.67 E-value=5.8e-05 Score=71.51 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=36.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.++++|.+|+|||||+|+|+..... .+.. ..|.|..... +...+ .+.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-----~~~~---------------~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-----SVSA---------------TPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-----eeCC---------------CCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 7999999999999999999743211 0111 1344544333 33333 68999999974
No 403
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.66 E-value=3.1e-05 Score=82.57 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred ccccccccccccccccccCCCCcchhh------ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccc
Q 004311 41 FHLQSRQFSAGGNLARAKDDKEPWWKE------SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAK 114 (762)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~ 114 (762)
+.+|+.+..+...+...+....+.... ......+++++|.+|+|||||+|+|+...... +..
T Consensus 84 i~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-----~~~------- 151 (287)
T PRK09563 84 LAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAK-----TGN------- 151 (287)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccc-----cCC-------
Confidence 455666666665555443322211100 01233579999999999999999996432111 111
Q ss_pred cCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 115 MDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 115 ~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..|+|..... +.+ +..+.||||||..
T Consensus 152 --------~~g~T~~~~~--~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 152 --------RPGVTKAQQW--IKL-GKGLELLDTPGIL 177 (287)
T ss_pred --------CCCeEEEEEE--EEe-CCcEEEEECCCcC
Confidence 2677777543 223 3468999999984
No 404
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.65 E-value=0.00016 Score=78.68 Aligned_cols=82 Identities=21% Similarity=0.151 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC-CceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG-RIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------ 139 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g-~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 139 (762)
.+++|+|.+|+|||||+++|..... .+. ++ +.+|+......+...+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a---------------~y------pftTi~p~~g~v~v~d~r~d~L~~~~~~ 61 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA---------------NP------PFTTIEPNAGVVNPSDPRLDLLAIYIKP 61 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC---------------CC------CCCCCCCceeEEEechhHHHHHHHHhCC
Confidence 4689999999999999999943322 110 00 1223333333333322
Q ss_pred -----eeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004311 140 -----YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 140 -----~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~~ 175 (762)
..+.++|.||... +......-++.+|+.+.|||+.+
T Consensus 62 ~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 62 EKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999854 45567888999999999999964
No 405
>PRK14974 cell division protein FtsY; Provisional
Probab=97.65 E-value=0.00025 Score=76.73 Aligned_cols=63 Identities=24% Similarity=0.319 Sum_probs=40.4
Q ss_pred cCeeEEEEeCCCCcCc----HHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCC-EEEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDF----TVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY--EVP-RLAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df----~~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p-~iiviNK~D~~ 205 (762)
.++.+.||||||.... ..++....+ ..|..+||+|+..|- ..+.++..+ .++ --+++||+|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 4578999999998643 333322222 468999999997752 223333332 233 47899999974
No 406
>PRK12289 GTPase RsgA; Reviewed
Probab=97.65 E-value=0.00016 Score=78.88 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=35.4
Q ss_pred HHHHhcCEEEEEEeCCCCc-ch-hHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 159 RALRVLDGAILVLCSVGGV-QS-QSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 159 ~al~~aD~aIlVvDa~~gv-~~-qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+++.+|.+++|+|+.+.. .. +..+.+..+...++|+++|+||+|+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3578999999999998653 22 22344455566799999999999984
No 407
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.64 E-value=0.00016 Score=72.41 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChh-hhhhhcceeecce-------------EEEee
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------TSCAW 137 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~~~~~ 137 (762)
+-|+++|+.|+||||.+-.|....... .+.+-+..........+... .-+.-|+.+.... ..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 458999999999999999886433211 11111111000000000000 0111232221110 00112
Q ss_pred cCeeEEEEeCCCCcCcHHH----HHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVE----VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~----~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+++.+.||||||...+..+ +...++ ..+-++||+|++.+.... ..........++. =++++|+|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 4578999999998655433 322222 467899999998864322 2333333444444 4559999974
No 408
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.64 E-value=0.00012 Score=76.09 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCc-chhHHH-HHHHHHHcCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGV-QSQSIT-VDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~-~~~~~~~~~~p~iiviNK~D~~ 205 (762)
|.......++.+|.+++|+|+.+.. ...... .+..+...++|+++|+||+|+.
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 3333344789999999999998654 333333 3344556789999999999984
No 409
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.63 E-value=6.6e-05 Score=80.03 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=40.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.++++|++|+|||||+|+|+...... .+.+.. ...+.+++|.......+... ..++||||..+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~--~g~v~~-----------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA--TGEISE-----------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc--ccceec-----------cCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 579999999999999999997543221 111111 00112345555544333322 37999999987
Q ss_pred cH
Q 004311 153 FT 154 (762)
Q Consensus 153 f~ 154 (762)
|.
T Consensus 226 ~~ 227 (287)
T cd01854 226 FG 227 (287)
T ss_pred cC
Confidence 64
No 410
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.62 E-value=0.00048 Score=74.49 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=63.5
Q ss_pred cceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-----------chhHHHHHHHHHH---
Q 004311 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR--- 190 (762)
Q Consensus 125 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-----------~~qt~~~~~~~~~--- 190 (762)
..|.......+.+++..+.+||++|+......|...+..++++|+|+|.++-. ...+...++.+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 44556666678889999999999999999999999999999999999998631 2233344444433
Q ss_pred -cCCCEEEEEeCCCCC
Q 004311 191 -YEVPRLAFINKLDRM 205 (762)
Q Consensus 191 -~~~p~iiviNK~D~~ 205 (762)
.++|+++++||.|+.
T Consensus 226 ~~~~pill~~NK~D~f 241 (317)
T cd00066 226 FANTSIILFLNKKDLF 241 (317)
T ss_pred ccCCCEEEEccChHHH
Confidence 478999999999973
No 411
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.61 E-value=0.00069 Score=73.95 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=64.7
Q ss_pred hcceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-----------cchhHHHHHHHHHH--
Q 004311 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-----------VQSQSITVDRQMRR-- 190 (762)
Q Consensus 124 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-----------v~~qt~~~~~~~~~-- 190 (762)
+-.|.......+.+++..+.+||..|+..+...|...+..++++|+|+|.++- -...+...++.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 34455666677888999999999999999999999999999999999999863 12334445555443
Q ss_pred --cCCCEEEEEeCCCCC
Q 004311 191 --YEVPRLAFINKLDRM 205 (762)
Q Consensus 191 --~~~p~iiviNK~D~~ 205 (762)
.++|+++++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 478999999999983
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00055 Score=77.31 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC---ceeeeeecCCCccccccCChhh-hhhhcceeecceEE-------EeecC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGR---IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKD 139 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~---i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~ 139 (762)
+-.+|+|+|..|+||||++..|...... -.+..-+..........+.... -...|+.+...... -.+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4579999999999999999988743211 0111111110000000000000 01112222211100 01346
Q ss_pred eeEEEEeCCCCcCcHHHHHH---HHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVER---ALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~---al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.+.||||||.......... .+. .....+||+++..+..... .+++.... ..+.-+++||+|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~-~~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAH-AKPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHh-hCCeEEEEecCcCc
Confidence 89999999997544333211 111 1245688899876533222 23333332 24568999999974
No 413
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.57 E-value=0.00026 Score=72.66 Aligned_cols=91 Identities=18% Similarity=0.051 Sum_probs=55.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.++.-|+|+|..++|||||+|+|+....... +... . ....+|+-+....... ..+..+.++||||
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~----~~~~---------~-~~~T~gi~~~~~~~~~-~~~~~v~~lDteG 69 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD----VMDT---------S-QQTTKGIWMWSVPFKL-GKEHAVLLLDTEG 69 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE----ecCC---------C-CCCccceEEEeccccC-CCcceEEEEecCC
Confidence 4677899999999999999999975421110 0000 0 0111344333222111 2457899999999
Q ss_pred CcCc------HHHHHHHHHh--cCEEEEEEeCCC
Q 004311 150 HVDF------TVEVERALRV--LDGAILVLCSVG 175 (762)
Q Consensus 150 ~~df------~~~~~~al~~--aD~aIlVvDa~~ 175 (762)
..+- ......++.. +|..|+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 70 TDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 8543 2233555555 999999888754
No 414
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00043 Score=75.39 Aligned_cols=214 Identities=21% Similarity=0.215 Sum_probs=111.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC-ceeeeeecCCCccccccCChh-hhhhhcceeecc-------------eEEE
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSA-------------ATSC 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~-i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~-------------~~~~ 135 (762)
..-.|-++|--|+||||.+..|..+-.. -.+..-|......-...|... .-.+-|+.+... ...+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999988643221 111111111100000000000 000112211111 1111
Q ss_pred eecCeeEEEEeCCCCcCcHH----HH--HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC
Q 004311 136 AWKDYQINIIDTPGHVDFTV----EV--ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD 208 (762)
Q Consensus 136 ~~~~~~i~liDTPG~~df~~----~~--~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~ 208 (762)
.-+++.+.||||+|--.... |+ ....-..|=+++|+||..| |+......+....+++ =++++|+|-...
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGdaR- 254 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGDAR- 254 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCCCc-
Confidence 22457999999999643333 33 2334457899999999876 3333333444456776 689999996421
Q ss_pred hhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecC--CChhhHHHHHH--HHHHHHHHHh
Q 004311 209 PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGE--VPADMETFVAE--KRRELIELVS 284 (762)
Q Consensus 209 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~--i~~~~~~~~~~--~~~~l~e~~~ 284 (762)
--..-+++...+.+.. |.| .|+....-+ .|+.+..+++. ....|+|.+.
T Consensus 255 -GGaALS~~~~tg~PIk-----------FiG---------------tGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~ 307 (451)
T COG0541 255 -GGAALSARAITGKPIK-----------FIG---------------TGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAE 307 (451)
T ss_pred -chHHHhhHHHHCCCeE-----------EEe---------------cCCCcccCCCcChHHHHHHhcCcccHHHHHHHHH
Confidence 1112234444443322 111 122222111 26677777765 4556777776
Q ss_pred cCCH-----HHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004311 285 EVDD-----KLGDMFLSDEPISSGDLEEAIRRATVAR 316 (762)
Q Consensus 285 ~~dd-----~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (762)
+..| ++.+++..+. ++-+++.+.+++.-.++
T Consensus 308 ~~~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 308 EVVDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKMG 343 (451)
T ss_pred HhhhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccC
Confidence 5432 3455555554 88899888887655444
No 415
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.56 E-value=5e-05 Score=73.15 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=35.1
Q ss_pred ccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHH
Q 004311 41 FHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+.+|+..+.+...+.+.+....+ ......+++++|.+|+|||||+++|+.
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~----~~~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAK----IDGKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHh----hcCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 56677777776666555533222 123456789999999999999999963
No 416
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.55 E-value=8.1e-05 Score=77.94 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=40.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+..+++|++|+|||||+|+|+-.... +.++++.. ..+-+-+|..+....+..++ .+|||||...
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~--~t~eIS~~-----------~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQ--KTGEISEK-----------LGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhh--hhhhhccc-----------CCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 46789999999999999999642211 11222221 01224455555554443333 6899999977
Q ss_pred cH
Q 004311 153 FT 154 (762)
Q Consensus 153 f~ 154 (762)
|.
T Consensus 229 ~~ 230 (301)
T COG1162 229 LG 230 (301)
T ss_pred cC
Confidence 64
No 417
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00022 Score=77.37 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChh-hhhhhcceeecceE--E-------Ee-e
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT--S-------CA-W 137 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~~--~-------~~-~ 137 (762)
.+.+.|+++|+.|+||||++..|....... .+.+-+..........+... .-..-|+.+..... . +. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 456889999999999999999986432110 11111111100000000000 00011221111100 0 01 1
Q ss_pred cCeeEEEEeCCCCcCcHHH----HHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHc-CCCE-EEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVE----VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPR-LAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~----~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~~p~-iiviNK~D~~ 205 (762)
.++.+.||||||......+ +..... ..|..+||+++... .+. ....+..+ .+++ -++++|+|-.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 3579999999998544333 333332 23677888887432 222 22222222 3433 6789999974
No 418
>PRK00098 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00015 Score=77.78 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+.++++|++|+|||||+|+|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999743
No 419
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00032 Score=76.31 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccc-cccCChhh-hhhhcceeecceEE---------Ee-e
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVG-AKMDSMDL-EREKGITIQSAATS---------CA-W 137 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~-~~~d~~~~-e~~~giTi~~~~~~---------~~-~ 137 (762)
..+.|+++|+.|+||||++..|......- .+.+-+... .+. ...+.... -..-|+.+...... +. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 34789999999999999999996432110 011111111 000 00000000 00122222211100 00 1
Q ss_pred cCeeEEEEeCCCCcCc----HHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDF----TVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df----~~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (762)
.++.+.||||||.... ..++...++ ..|.++||+||+.+-. ....+++.... +++ =++++|+|-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~--~~idglI~TKLDET 390 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKD--IHIDGIVFTKFDET 390 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcC--CCCCEEEEEcccCC
Confidence 2478999999998543 333444443 2577899999865421 11223322222 343 6889999975
No 420
>PRK00098 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00026 Score=75.83 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHhcCEEEEEEeCCCCcchhH--HHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 160 ALRVLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 160 al~~aD~aIlVvDa~~gv~~qt--~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.++.+|.+++|+|+.+...... .+.+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 4688999999999976533222 334445667899999999999984
No 421
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.46 E-value=0.00028 Score=75.23 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=35.0
Q ss_pred HHHhcCEEEEEEeCCCCc-chhH-HHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 160 ALRVLDGAILVLCSVGGV-QSQS-ITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 160 al~~aD~aIlVvDa~~gv-~~qt-~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
-+..+|.+++|+|+.++. .... .+.+..+...++|+++|+||+|+.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 367899999999998875 3332 333445566799999999999985
No 422
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.46 E-value=0.00028 Score=73.33 Aligned_cols=92 Identities=23% Similarity=0.227 Sum_probs=59.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc-
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 151 (762)
-|+-|+|-||+|||||+|++........+...+.. ++|+|+..+...--.+...+.++||||..
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~---------------~pGVT~~V~~~iri~~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGA---------------EPGVTRRVSERIRISHRPPVYLIDTPGILV 208 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccC---------------CCCceeeehhheEeccCCceEEecCCCcCC
Confidence 48999999999999999999765544443322222 38999988875555566789999999972
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchh
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQ 180 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~q 180 (762)
.=....+.+++.| .+.+|-|.--|...+
T Consensus 209 P~I~~~e~~lKLA-L~g~Vkd~~V~~~~~ 236 (335)
T KOG2485|consen 209 PSIVDVEDGLKLA-LCGLVKDHLVGEETI 236 (335)
T ss_pred CCCCCHHHhhhhh-hcccccccccCHHHH
Confidence 2223334444443 233445544443333
No 423
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.44 E-value=0.00016 Score=78.26 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=41.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.++.++|-+|+|||||+|+|+....+. +.. .+|+|.......+. ..+.|+||||..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~-----~s~---------------~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAK-----TSN---------------RPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhccccee-----eCC---------------CCceecceEEEEcC---CCeEEecCCCcC
Confidence 459999999999999999997654422 111 25777766655543 349999999984
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00085 Score=74.55 Aligned_cols=130 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC---CceeeeeecCCCccccccCChh-hhhhhcceeecceEE-------EeecCe
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG---RIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAATS-------CAWKDY 140 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g---~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~~~-------~~~~~~ 140 (762)
-..|+++|..|+||||++..|....- ...+.+-+..........+... .-+..|+.+...... ....++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 46799999999999999998865321 0111111111100001111110 011123333222111 124568
Q ss_pred eEEEEeCCCCcCcHHHHHH---HHHh---cCEEEEEEeCCCCcchhHHHHHHHHHHc-CCCE-EEEEeCCCCC
Q 004311 141 QINIIDTPGHVDFTVEVER---ALRV---LDGAILVLCSVGGVQSQSITVDRQMRRY-EVPR-LAFINKLDRM 205 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~---al~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~~p~-iiviNK~D~~ 205 (762)
.+.+|||+|.......... .+.. .+-.+||+|++.+- ++.. ..+..+ .+++ =++++|+|-.
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~--~~~~~f~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLD--EVISAYQGHGIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHH--HHHHHhcCCCCCEEEEEeeeCC
Confidence 8999999998654443322 2322 23578999998642 2222 122222 2443 6889999974
No 425
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.38 E-value=0.00061 Score=75.04 Aligned_cols=53 Identities=19% Similarity=-0.003 Sum_probs=38.8
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+|...+....+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 46777667777889999999999776544333333332 278999999999985
No 426
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.35 E-value=2.9e-05 Score=74.22 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC---eeEEEEeC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQINIIDT 147 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDT 147 (762)
.+-.+.|+|.-++|||+++.+.+.+...... ...|-++.+..-+.|++ .++.|||.
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~y---------------------RAtIgvdfalkVl~wdd~t~vRlqLwdI 82 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHY---------------------RATIGVDFALKVLQWDDKTIVRLQLWDI 82 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHH---------------------HHHHhHHHHHHHhccChHHHHHHHHhcc
Confidence 4556889999999999999998754332111 01122222223345655 46789999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH------cC--CCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YE--VPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~------~~--~p~iiviNK~D~~ 205 (762)
.|+..|.....-+++.+.++.+|+|.+..........|.+-.. .+ +|+++..||+|..
T Consensus 83 agQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 83 AGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred hhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 9999999888888999999999999998777666666665433 23 3568889999975
No 427
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0011 Score=66.52 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=50.1
Q ss_pred eeEEEEeC-CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcC-CCEEEEEeCCCCC
Q 004311 140 YQINIIDT-PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDRM 205 (762)
Q Consensus 140 ~~i~liDT-PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~-~p~iiviNK~D~~ 205 (762)
+.+.++|| +|.+.|.. ...+.+|.+|+|+|.+..-....+++-+++.+.+ .++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 67888898 67666653 3457799999999998765666777888888899 7788999999964
No 428
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.31 E-value=0.0021 Score=60.66 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=47.2
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDR 204 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~iiviNK~D~ 204 (762)
+.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+.+. ..+..+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998654 4456789999999999998765544555566555432 3467799999975
No 429
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.21 E-value=0.00082 Score=67.80 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-.++++|-+.+|||||+..|. |..+. |... -++|.........+++-++.+.|.||..+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~---vasy---------------efttl~~vpG~~~y~gaKiqlldlpgiie 118 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSE---VAAY---------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIE 118 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCc---cccc---------------cceeEEEecceEeccccceeeecCcchhc
Confidence 369999999999999999883 33322 2222 34566666677789999999999999865
Q ss_pred c-------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHHc-----CCCEEEEEeCCCCCCCC
Q 004311 153 F-------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY-----EVPRLAFINKLDRMGAD 208 (762)
Q Consensus 153 f-------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~-----~~p~iiviNK~D~~~~~ 208 (762)
= ..++....|.|..+++|+|+-.++.. ..+++. +.-+ +.|.=+..-|-|.-+.+
T Consensus 119 gakdgkgrg~qviavartcnli~~vld~~kp~~h--k~~ie~eleg~girlnk~pp~i~~kkKdkgGIn 185 (358)
T KOG1487|consen 119 GAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH--KKIIEKELEGFGIRLNKQPPNIGTKKKDKGGIN 185 (358)
T ss_pred ccccCCCCccEEEEEeecccEEEEEeeccCcccH--HHHHHHhhhcceeeccCCCCCccccccccCcee
Confidence 3 23456667889999999999887542 233322 2222 34555555666665544
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.0014 Score=73.67 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC---CceeeeeecCCCccccccCChhh-hhhhcceeecceEE-------EeecCe
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG---RIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKDY 140 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g---~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~~ 140 (762)
-++|+++|+.|+||||++-.|..... .-.+.+-+..........+.... -+..|+.+...... -...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999998864321 01111111111000000000000 01112222111110 012468
Q ss_pred eEEEEeCCCCcCcH----HHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 141 QINIIDTPGHVDFT----VEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 141 ~i~liDTPG~~df~----~~~~~al~---~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+.||||||...+. .++...+. ..+-+.+|++++.+. .....++......++ -=++++|+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 99999999996553 23334444 223668899987642 222333333333232 26889999974
No 431
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.18 E-value=0.002 Score=57.33 Aligned_cols=82 Identities=21% Similarity=0.126 Sum_probs=52.4
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 75 IGISA-HIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 75 I~iiG-~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
|++.| ..|+||||+.-.|......-.. . ....|..+. +.+.+||+|+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~------~---vl~~d~d~~-------------------~d~viiD~p~~~~- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK------R---VLLIDLDPQ-------------------YDYIIIDTPPSLG- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC------c---EEEEeCCCC-------------------CCEEEEeCcCCCC-
Confidence 55666 7799999999888643321000 0 112222211 6899999999764
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR 186 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~ 186 (762)
.....++..+|.+|+++++...-.....+.++
T Consensus 53 -~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 53 -LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred -HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 34558899999999999986544444444443
No 432
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.16 E-value=0.005 Score=66.29 Aligned_cols=142 Identities=22% Similarity=0.237 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc------eeeeeecCCCccccccCChhhhhhhcceeecceEEEe----------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRI------HEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---------- 136 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i------~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------- 136 (762)
+-..|-|--|||||||+++||.+.... ...|++.-... ..+.+.. +.-..+...-..+.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~-~~l~~~~----e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGG-ALLSDTG----EEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCC-CccccCC----ccEEEeCCceEEEeccchhHHHHH
Confidence 456789999999999999999765511 11122210000 0011000 00011111112222
Q ss_pred -----ecCeeEEEEeCCCCcCcHHHHHHH--------HHhcCEEEEEEeCCCCcchhH---HHHHHHHHHcCCCEEEEEe
Q 004311 137 -----WKDYQINIIDTPGHVDFTVEVERA--------LRVLDGAILVLCSVGGVQSQS---ITVDRQMRRYEVPRLAFIN 200 (762)
Q Consensus 137 -----~~~~~i~liDTPG~~df~~~~~~a--------l~~aD~aIlVvDa~~gv~~qt---~~~~~~~~~~~~p~iiviN 200 (762)
..+....+|-|-|..+=.+.+..- .-..|++|-||||........ .....|+.. .=+|++|
T Consensus 77 ~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlN 153 (323)
T COG0523 77 RLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLN 153 (323)
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEe
Confidence 123578899999987643333222 234588999999987654332 223333332 2399999
Q ss_pred CCCCCCCChhHHHHHHHHHhcc
Q 004311 201 KLDRMGADPWKVLDQARSKLRH 222 (762)
Q Consensus 201 K~D~~~~~~~~~~~~i~~~l~~ 222 (762)
|.|+......+.++.....++.
T Consensus 154 K~Dlv~~~~l~~l~~~l~~lnp 175 (323)
T COG0523 154 KTDLVDAEELEALEARLRKLNP 175 (323)
T ss_pred cccCCCHHHHHHHHHHHHHhCC
Confidence 9999876543444444444443
No 433
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0015 Score=72.03 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=63.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC--CceeeeeecCCCcccc-ccCChhhh-hhhcceeecce------EEEeecCeeE
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG--RIHEIHEVRGRDGVGA-KMDSMDLE-REKGITIQSAA------TSCAWKDYQI 142 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g--~i~~~~~v~~~~~~~~-~~d~~~~e-~~~giTi~~~~------~~~~~~~~~i 142 (762)
+-|+++|++|+||||++..|..... .-.+.. +-+.+.+.. ..+..... ...|+...... ..+.-.++.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~-Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS-LYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE-EecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4589999999999999999975321 001111 111111000 00000000 01122211110 0011146799
Q ss_pred EEEeCCCCcCcHH----HHHHHHHh-----cCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCC
Q 004311 143 NIIDTPGHVDFTV----EVERALRV-----LDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (762)
Q Consensus 143 ~liDTPG~~df~~----~~~~al~~-----aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~ 205 (762)
.||||||...... ++...++. ..-.+||+||+.+... .......- ..++ -=++++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHh--cCCCCCEEEEEcccCC
Confidence 9999999854322 23333332 2357899999876322 22222222 2233 36889999974
No 434
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.14 E-value=0.0024 Score=65.75 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=47.8
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH------HcCCCEEEEEeCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR------RYEVPRLAFINKLD 203 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~------~~~~p~iiviNK~D 203 (762)
+++.+.||||||+.. ..+..++..||.+|+.+.+..-....+...+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 568999999999875 55678899999999999886554444444443332 23678889999997
No 435
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.10 E-value=0.0015 Score=63.87 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=52.4
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (762)
.++.+.++|||+... ......+ ..+|.+|+|+.+...-...+...++.+.+.+.++ -+++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 578999999999753 3334344 6899999999988777777888889999999987 4789999853
No 436
>PRK01889 GTPase RsgA; Reviewed
Probab=97.08 E-value=0.0024 Score=70.22 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=37.3
Q ss_pred HHhcCEEEEEEeCCCCcch-hHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 161 LRVLDGAILVLCSVGGVQS-QSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 161 l~~aD~aIlVvDa~~gv~~-qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+..+|.+++|+++...... ...+.+..+...++|.++|+||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999876665 44566777888999999999999985
No 437
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.04 E-value=0.003 Score=56.62 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=46.0
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC----EEEEEeC
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP----RLAFINK 201 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p----~iiviNK 201 (762)
.+.+||||+... .....++..+|.+|+|++....-...+...++.+.+.+.+ +.+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 799999999765 3456788999999999999877666677777777666543 4688885
No 438
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.04 E-value=0.0057 Score=66.52 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecce--------EEEeec---Cee
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA--------TSCAWK---DYQ 141 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~--------~~~~~~---~~~ 141 (762)
.-|+++|++-.||||++.+++...- +.. +.+.....+..|.+|... .|-|+-... ..+... ..+
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~V-lPn---I~d~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~~~~~~k 92 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLV-LPN---IEDEYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLDDGIKVK 92 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhc-CCC---CCCHHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEecCCceEE
Confidence 4599999999999999999975432 222 111111133445444322 233432221 112222 368
Q ss_pred EEEEeCCCC-------------------------cCcHHHHHHHHHh-----cC-EEEEEEeCCCCc------chhHHHH
Q 004311 142 INIIDTPGH-------------------------VDFTVEVERALRV-----LD-GAILVLCSVGGV------QSQSITV 184 (762)
Q Consensus 142 i~liDTPG~-------------------------~df~~~~~~al~~-----aD-~aIlVvDa~~gv------~~qt~~~ 184 (762)
+-|||+-|+ .-|.....-+-+. +- |+|+--|++-+. ....+++
T Consensus 93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEerv 172 (492)
T PF09547_consen 93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERV 172 (492)
T ss_pred EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHH
Confidence 889999886 1233333322221 22 455555665432 2345678
Q ss_pred HHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 185 DRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 185 ~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
...+++.++|+++++|-.+-...+..+..+++.++++..+.++
T Consensus 173 I~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpv 215 (492)
T PF09547_consen 173 IEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPV 215 (492)
T ss_pred HHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence 8889999999999999888655556677888899998877664
No 439
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.003 Score=71.44 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCccccccCChhh-hhhhcceeecceE-------EEeecC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAAT-------SCAWKD 139 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~-------~~~~~~ 139 (762)
-+.|+++|..|+||||++..|.... |. .+.+-+..........+.... -...|+.+..... .....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 3579999999999999999997432 11 122212211000000010010 1122333322111 123346
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHH-hcC-----EEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVERALR-VLD-----GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~-~aD-----~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.+.+|||+|.......+...+. ..+ -.+||+|+..+... ...++......+ ..-+++||+|-.
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 78999999996543333322222 122 26899999765311 111222222222 235778999964
No 440
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.02 E-value=0.015 Score=63.42 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+++-..+.|..|+|||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4566789999999999999999965
No 441
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.01 E-value=0.005 Score=60.53 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=43.1
Q ss_pred eeEEEEeCCCCcCcH------HHHHHHHHhcC---EEEEEEeCCCCcchhHH------HHHHHHHHcCCCEEEEEeCCCC
Q 004311 140 YQINIIDTPGHVDFT------VEVERALRVLD---GAILVLCSVGGVQSQSI------TVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 140 ~~i~liDTPG~~df~------~~~~~al~~aD---~aIlVvDa~~gv~~qt~------~~~~~~~~~~~p~iiviNK~D~ 204 (762)
-.+.++|+||++++. ....+.+..-+ ++++++|+.-- ...++ ..+.......+|.|=|+.|||+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~-vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFL-VDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchh-hhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 578999999987653 33445554433 56788887432 22222 2334445678999999999998
Q ss_pred CC
Q 004311 205 MG 206 (762)
Q Consensus 205 ~~ 206 (762)
..
T Consensus 177 lk 178 (273)
T KOG1534|consen 177 LK 178 (273)
T ss_pred hh
Confidence 53
No 442
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.00 E-value=0.002 Score=67.73 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=56.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-------------
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------- 138 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------- 138 (762)
-..++|||.+|+||||++|+|....-. .+ . -+-.||+...+.+...
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~---~~------------N------fPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~ 78 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAG---AA------------N------FPFCTIDPNEARVEVPDSRFDLLCPIYGP 78 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCC---cc------------C------CCcceeccccceeecCchHHHHHHHhcCC
Confidence 357999999999999999999432111 10 0 0233555555444321
Q ss_pred ----CeeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004311 139 ----DYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 139 ----~~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~~ 175 (762)
.-.+++.|++|... +......-+|.+|+++-||+|.+
T Consensus 79 ~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 79 KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 14689999999743 34455677899999999999975
No 443
>PRK13796 GTPase YqeH; Provisional
Probab=96.99 E-value=0.0033 Score=69.38 Aligned_cols=51 Identities=22% Similarity=0.051 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHhcC-EEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLD-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD-~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+|.. +...+...| .+++|||+.+........+.+.. .+.|+++|+||+|+.
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl 109 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLL 109 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhC
Confidence 4443 566666666 88999999875443333222222 378999999999985
No 444
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.99 E-value=0.0063 Score=54.06 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeecCCCeEEecCC-------Ce-----EEEcCeEEEeecCccc
Q 004311 369 PDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNT-------GK-----KIKVPRLVRMHSNEME 427 (762)
Q Consensus 369 ~~~p~~~~V~k~~~d~--------~-G~l~~~RV~sG~l~~g~~v~~~~~-------~~-----~~ki~~i~~~~g~~~~ 427 (762)
.+.|+.|+|.+.|... . |-++-|++..|.|+.||+|-+.+. +. ..+|..|+ ....
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~----~~~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK----AENN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE----ecCc
Confidence 4678888998888754 3 779999999999999999976632 11 12344444 3345
Q ss_pred ccccccCCCEEEE
Q 004311 428 DIQEAHAGQIVAV 440 (762)
Q Consensus 428 ~v~~a~aGdIv~i 440 (762)
.+++|.||+.++|
T Consensus 78 ~l~~a~pGgliGv 90 (113)
T cd03688 78 DLQEAVPGGLIGV 90 (113)
T ss_pred cccEEeCCCeEEE
Confidence 7999999999998
No 445
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0033 Score=69.46 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=67.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc-----eeeeeecCCCccccccCChhh-hhhhcceeecceEE-------Eeec
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRI-----HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWK 138 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i-----~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~ 138 (762)
-+.|+++|+.|+||||.+..|....... .+..-+..........+.... -..-|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4689999999999999999886432110 111111111000000000000 00012222111100 0235
Q ss_pred CeeEEEEeCCCCcCcH----HHHHHHHHhc--C-EEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFT----VEVERALRVL--D-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~----~~~~~al~~a--D-~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
++.+.||||||..... .++...+..+ + -.+||+||+.+..... .++......+ +-=++++|+|-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 6899999999985432 3444444443 3 5889999988733222 3333322111 346889999974
No 446
>PRK12288 GTPase RsgA; Reviewed
Probab=96.98 E-value=0.0035 Score=68.45 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHhcCEEEEEEeCCCCcchhHHHH-HHHHHHcCCCEEEEEeCCCCC
Q 004311 161 LRVLDGAILVLCSVGGVQSQSITV-DRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 161 l~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~~~~p~iiviNK~D~~ 205 (762)
..++|.+++|.+...........- +..+...++|+++|+||+|+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~ 163 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLL 163 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 456899999998765554443332 334566789999999999985
No 447
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.98 E-value=0.0043 Score=69.08 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRI 99 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i 99 (762)
...+++|+|+|+.++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999998776654
No 448
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.98 E-value=0.0048 Score=66.59 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=40.0
Q ss_pred eeEEEEeCCCCcCcHHHHHHHH--------HhcCEEEEEEeCCCCcchhHH--HHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVERAL--------RVLDGAILVLCSVGGVQSQSI--TVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al--------~~aD~aIlVvDa~~gv~~qt~--~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
....+|.|.|..+-...+...+ -..|++|.|||+......... ....|+. ..-+|++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEEEeccccCCH
Confidence 4678999999987544333221 124889999999865322111 1112222 234999999999753
No 449
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.96 E-value=0.011 Score=61.38 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=51.5
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH--cCCCEEEEEeCCCCCCCChhHHHHHH
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRMGADPWKVLDQA 216 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~~p~iiviNK~D~~~~~~~~~~~~i 216 (762)
+.+.+||||+. +......++..||.+|+++.+..--.......+. .... ...+.-+|+|++|.......+..+.+
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 48999999995 3456778999999999999885322122221222 2221 23456789999997543334455556
Q ss_pred HHHhccc
Q 004311 217 RSKLRHH 223 (762)
Q Consensus 217 ~~~l~~~ 223 (762)
.+.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 6666543
No 450
>PHA02518 ParA-like protein; Provisional
Probab=96.91 E-value=0.011 Score=59.60 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=44.3
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCE-EEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPR-LAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~-iiviNK~D~~ 205 (762)
..+.+.||||||.. ...+..++..+|.+|+++.+..--......+.+.+.. .+.|. .++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 35799999999974 4567889999999999999876433333333333322 24555 4666776643
No 451
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.87 E-value=0.0034 Score=61.93 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=38.5
Q ss_pred CeeEEEEeCCCCcCcHHHH-----HHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEV-----ERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRRYEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~-----~~al~~aD~aIlVvDa~~gv~~q-t~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (762)
+..+.||-|.|..+....+ ....-..+.+|.|+|+..-.... ....+ ......--++++||+|+...+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~--~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELL--REQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHH--HHHHCT-SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhh--hhcchhcCEEEEeccccCChh
Confidence 3578999999976544331 22233468999999996531111 11111 122233459999999996543
No 452
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.84 E-value=0.0075 Score=61.30 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=51.6
Q ss_pred ecCeeEEEEeCCCCcCcHHHHHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHHc----CCCE-EEEEeCCCCCCCCh
Q 004311 137 WKDYQINIIDTPGHVDFTVEVERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRY----EVPR-LAFINKLDRMGADP 209 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~~~~~~a--l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~----~~p~-iiviNK~D~~~~~~ 209 (762)
.+.+.+.||||||....... ... ++.||.+|+|++...--......+++.+... +.+. .+++||+|.. ..
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~ 190 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RE 190 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cH
Confidence 34689999999986532111 112 3489999999987542222233344444433 4444 4899999964 23
Q ss_pred hHHHHHHHHHhcccee
Q 004311 210 WKVLDQARSKLRHHCA 225 (762)
Q Consensus 210 ~~~~~~i~~~l~~~~~ 225 (762)
...++++.+.++....
T Consensus 191 ~~~~~~~~~~~~~~vl 206 (212)
T cd02117 191 TELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 4466777777765543
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0046 Score=73.23 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCccccccCChhh-hhhhcceeecceEE-------EeecCe
Q 004311 73 RNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKDY 140 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~~ 140 (762)
+-|+++|+.|+||||++..|.... |. .+..-+..........+.... -...|+.+...... -...++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 568999999999999999997422 11 111111111000000000000 01123222211100 023467
Q ss_pred eEEEEeCCCCcCcHHHHHHHHH------hcCEEEEEEeCCCCcchhHH-HHHHHHHHc-CCC-EEEEEeCCCCC
Q 004311 141 QINIIDTPGHVDFTVEVERALR------VLDGAILVLCSVGGVQSQSI-TVDRQMRRY-EVP-RLAFINKLDRM 205 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~------~aD~aIlVvDa~~gv~~qt~-~~~~~~~~~-~~p-~iiviNK~D~~ 205 (762)
.+.||||||.......+...+. ..+-.+||+|++.+. ++. ++.+..... ..+ -=++++|+|-.
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 8999999995433333322222 235689999998532 221 122222211 122 35779999975
No 454
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.83 E-value=0.0078 Score=66.48 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=84.2
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCcee-ee----------eecCCC-ccccccC------Chhh----------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHE-IH----------EVRGRD-GVGAKMD------SMDL---------- 120 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~-~~----------~v~~~~-~~~~~~d------~~~~---------- 120 (762)
.+.+++|+++|.-.+||||.++.+... +...+ .| ....|. ..+.+.| -.++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh-ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 467899999999999999999988532 11111 00 011121 1111111 1111
Q ss_pred ------hhhhcceeecceEEEeecC---eeEEEEeCCCCc-------------CcHHHHHHHHHhcCEEEEEEeCCCCcc
Q 004311 121 ------EREKGITIQSAATSCAWKD---YQINIIDTPGHV-------------DFTVEVERALRVLDGAILVLCSVGGVQ 178 (762)
Q Consensus 121 ------e~~~giTi~~~~~~~~~~~---~~i~liDTPG~~-------------df~~~~~~al~~aD~aIlVvDa~~gv~ 178 (762)
....|.|+....+.+..+| .+..|+|.||.+ +.......++....++||+|--.. +.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS-VD 462 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS-VD 462 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC-cc
Confidence 1224888888888887776 578999999973 223344566788899998874211 11
Q ss_pred hh---HHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 179 SQ---SITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 179 ~q---t~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
+. --.+..++.-.|...|+|++|+|+...
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 11 123445556678889999999999753
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.78 E-value=0.0067 Score=63.74 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC-ceeeeeecCCCccccccCChhh-hhhhcceeecceEE---------E-eec
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS---------C-AWK 138 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~-i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~---------~-~~~ 138 (762)
+...++++|.+|+||||++..|...... ..+.+-+..........+.... -..-|+.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3468999999999999999988644211 1111212111000000000000 00112222111000 0 123
Q ss_pred CeeEEEEeCCCCcCcHHH----HHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVE----VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~----~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (762)
++.+.||||||......+ +...++ ..|-.+||+||+.+-. +....++... .+++ =++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~--~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFK--DIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhC--CCCCCEEEEEeecCCC
Confidence 579999999998744333 333332 3467899999975321 1222222222 2333 68899999753
No 456
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.72 E-value=0.014 Score=61.60 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=49.3
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH----HHcCCCE-EEEEeCCCCCCCChhHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPR-LAFINKLDRMGADPWKV 212 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~----~~~~~p~-iiviNK~D~~~~~~~~~ 212 (762)
+++.+.||||||..... .+..++..||.+|+++.+..--.......++.+ ...++++ -+++|+.+. .+.
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 46899999999875322 244568899999999977543222222333322 2345665 488999773 244
Q ss_pred HHHHHHHhccce
Q 004311 213 LDQARSKLRHHC 224 (762)
Q Consensus 213 ~~~i~~~l~~~~ 224 (762)
++++.+.++...
T Consensus 190 ~~~~~~~~g~~v 201 (270)
T PRK13185 190 IDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHcCCCE
Confidence 556666555443
No 457
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.70 E-value=0.005 Score=67.10 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=67.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChh---hhh------hhcceeecceEEE-------
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD---LER------EKGITIQSAATSC------- 135 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~---~e~------~~giTi~~~~~~~------- 135 (762)
-|.|+++|+.|+||||.+-.|..........-.|. --.+|... .|+ --|+.+......-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-----iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-----IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-----EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 68899999999999999998865443111100010 00111111 111 1233433332221
Q ss_pred eecCeeEEEEeCCCCcCcHH----HHHHHHHhc--CEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004311 136 AWKDYQINIIDTPGHVDFTV----EVERALRVL--DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (762)
Q Consensus 136 ~~~~~~i~liDTPG~~df~~----~~~~al~~a--D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (762)
.+.++.+.||||.|+.-... ++...+..+ .-.-||++++.. ...-.+++.+... +|+ =++++|+|-..
T Consensus 278 ~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~--~~i~~~I~TKlDET~ 352 (407)
T COG1419 278 ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSL--FPIDGLIFTKLDETT 352 (407)
T ss_pred HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhcc--CCcceeEEEcccccC
Confidence 23468999999999864433 344444433 345778888652 1112233333332 443 56789999753
No 458
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.70 E-value=0.012 Score=51.43 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=58.3
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-cc-ccCce
Q 004311 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDT 450 (762)
Q Consensus 374 ~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdt 450 (762)
.++|.....|+. |.++.+-|.+|+|++||.+...... -||+.|+- ..-.++++|.||+.+-|.|+ ++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d---~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFD---ENGKRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEEC---CCCCCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 456777777887 9999999999999999999875432 25666654 44467999999999999999 54 67886
Q ss_pred eec
Q 004311 451 FTD 453 (762)
Q Consensus 451 L~~ 453 (762)
+..
T Consensus 77 ~~~ 79 (95)
T cd03702 77 FLV 79 (95)
T ss_pred EEE
Confidence 653
No 459
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.68 E-value=0.03 Score=59.82 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=50.2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChhHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKVL 213 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~~ 213 (762)
++.+.+|||||.... ..+..++..||.+|+++++..--......+.+.+.. .+++. -+++|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 588999999987321 223456788999999998764332333333333332 23444 488899873 2345
Q ss_pred HHHHHHhccceee
Q 004311 214 DQARSKLRHHCAA 226 (762)
Q Consensus 214 ~~i~~~l~~~~~~ 226 (762)
+++.+.++.....
T Consensus 189 ~~~~~~~~~~vl~ 201 (290)
T CHL00072 189 DKYVEACPMPVLE 201 (290)
T ss_pred HHHHHHcCCceEE
Confidence 5566666655433
No 460
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.65 E-value=0.022 Score=60.09 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=49.2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----HcCCCE-EEEEeCCCCCCCChhHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPR-LAFINKLDRMGADPWKVL 213 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~----~~~~p~-iiviNK~D~~~~~~~~~~ 213 (762)
.+.+.||||||.... ..+..++..||.+|+++.+...-.......++.+. ..+++. .+|+|++|. ...+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-----~~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK-----TDLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-----HHHH
Confidence 588999999987532 12445689999999999886443233333333222 345664 378999984 2344
Q ss_pred HHHHHHhccce
Q 004311 214 DQARSKLRHHC 224 (762)
Q Consensus 214 ~~i~~~l~~~~ 224 (762)
+++.+.++...
T Consensus 189 ~~~~~~~~~~v 199 (267)
T cd02032 189 DKFVEAVGMPV 199 (267)
T ss_pred HHHHHhCCCCE
Confidence 55555555433
No 461
>PRK01889 GTPase RsgA; Reviewed
Probab=96.56 E-value=0.0026 Score=69.86 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
..++++|.+|+|||||+|.|+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 5799999999999999999986443
No 462
>PRK13695 putative NTPase; Provisional
Probab=96.46 E-value=0.0084 Score=58.84 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHhcCEEEEEEe---CCCCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004311 161 LRVLDGAILVLC---SVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 161 l~~aD~aIlVvD---a~~gv~~qt~~~~~~~~~~~~p~iiviNK~ 202 (762)
+..+|. +++| ..+....+....+..+.+.+.|+|+++||.
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 344555 7889 666666777788888888899999999984
No 463
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.46 E-value=0.056 Score=57.19 Aligned_cols=85 Identities=11% Similarity=-0.027 Sum_probs=49.3
Q ss_pred ecCeeEEEEeCCCCcCcH-HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH---HcCCCEE-EEEeCCCCCCCChhH
Q 004311 137 WKDYQINIIDTPGHVDFT-VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR---RYEVPRL-AFINKLDRMGADPWK 211 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~-~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~---~~~~p~i-iviNK~D~~~~~~~~ 211 (762)
++++.+.||||||..... -....++..||.+|+|+.....-......+++.+. ..++++. +++|+.+.. ...+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 456899999999874211 11122345899999999875432222222333333 2356663 888976532 1245
Q ss_pred HHHHHHHHhccc
Q 004311 212 VLDQARSKLRHH 223 (762)
Q Consensus 212 ~~~~i~~~l~~~ 223 (762)
.++++.+.++..
T Consensus 192 ~~e~l~~~~~~~ 203 (273)
T PRK13232 192 LLEAFAKKLGSQ 203 (273)
T ss_pred HHHHHHHHhCCC
Confidence 677777777653
No 464
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.45 E-value=0.011 Score=57.87 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=34.3
Q ss_pred CEEEEEEeCCCCcchhHHHHHHH--HHHcCCCEEEEEeCCCCC
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQ--MRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~--~~~~~~p~iiviNK~D~~ 205 (762)
|++++|+|+..+.......+.+. +...+.|+|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999887777777666 444679999999999995
No 465
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.42 E-value=0.016 Score=49.94 Aligned_cols=77 Identities=22% Similarity=0.183 Sum_probs=51.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH
Q 004311 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 154 (762)
+++.|..|+||||++..|...-.. .|..+- .+. .+.++|+||..+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-------------------------~g~~v~----~~~----d~iivD~~~~~~~~ 48 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-------------------------RGKRVL----LID----DYVLIDTPPGLGLL 48 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------------------------CCCeEE----EEC----CEEEEeCCCCccch
Confidence 678899999999999999643211 111110 011 88999999987643
Q ss_pred HH-HHHHHHhcCEEEEEEeCCCCcchhHHHH
Q 004311 155 VE-VERALRVLDGAILVLCSVGGVQSQSITV 184 (762)
Q Consensus 155 ~~-~~~al~~aD~aIlVvDa~~gv~~qt~~~ 184 (762)
.. ....+..+|.++++++....-.......
T Consensus 49 ~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 49 VLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 22 2567788999999999876554444443
No 466
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.42 E-value=0.041 Score=55.15 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=91.0
Q ss_pred cCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeec
Q 004311 618 LIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVG 697 (762)
Q Consensus 618 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~ 697 (762)
|.+..++||.+.++..- -..---.+.+..|=..|.. +|+..|...-+.|+..+.|.++-..+|.+...|.+..++|.+
T Consensus 87 L~~~~l~nv~vVVtRYF-GGikLG~GGLvRAY~~aa~-~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T TIGR00257 87 LRGSDLGDIGAVVVRYF-GGILLGTGGLIKAYGKSVL-EALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIK 164 (204)
T ss_pred HHHCCCCcEEEEEEEec-CCcccCCchhHHHHHHHHH-HHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEe
Confidence 34567888888887520 0111112335556667777 888999999999999999999999999999999999999998
Q ss_pred cccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004311 698 NDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 734 (762)
Q Consensus 698 ~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 734 (762)
.+..+ ...++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~-~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 165 SNFSN-NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred eEecC-CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 88754 4889999999999999999999999988654
No 467
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.41 E-value=0.026 Score=59.44 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=46.1
Q ss_pred CeeEEEEeCCCCcCcHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----HcCCCEE-EEEeCCCCCCCChhHH
Q 004311 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPRL-AFINKLDRMGADPWKV 212 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~-~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~----~~~~p~i-iviNK~D~~~~~~~~~ 212 (762)
++.+.||||||....... ...++..+|.+|+++.+..--......+++... ..+.++. ++.|+.. .....+.
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~~ 193 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDEL 193 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHHH
Confidence 589999999987522111 112334699999999886432222222322222 2356665 4446532 1222355
Q ss_pred HHHHHHHhccce
Q 004311 213 LDQARSKLRHHC 224 (762)
Q Consensus 213 ~~~i~~~l~~~~ 224 (762)
++++.+.++...
T Consensus 194 ~~~l~~~~g~~v 205 (270)
T cd02040 194 IDAFAKRLGTQM 205 (270)
T ss_pred HHHHHHHcCCCe
Confidence 677777776543
No 468
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.36 E-value=0.0027 Score=70.20 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=40.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|++||.+|+||||++|+|.....+ +|+.. +|.|-....+.+ .-.+.|.|+||.+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-----sVS~T---------------PGkTKHFQTi~l---s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-----SVSST---------------PGKTKHFQTIFL---SPSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-----eeecC---------------CCCcceeEEEEc---CCCceecCCCCcc
Confidence 689999999999999999999643221 12222 566655554443 2468899999985
No 469
>PRK11568 hypothetical protein; Provisional
Probab=96.18 E-value=0.075 Score=53.24 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=90.8
Q ss_pred cCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeec
Q 004311 618 LIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVG 697 (762)
Q Consensus 618 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~ 697 (762)
|.+..++||.+.++..- -..---.+.+..|=..|.+ +|+.+|...-+.|...+.|.++-..+|.+...|.+..+.|.+
T Consensus 87 L~~~~l~nv~vVVtRYF-GGikLG~GGLvRAY~~aa~-~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T PRK11568 87 LMGSGVGEITAVVVRYY-GGILLGTGGLVKAYGGGVQ-QALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVN 164 (204)
T ss_pred HHHCCCccEEEEEEEEc-CCcccccchhHHHHHHHHH-HHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEc
Confidence 34667889988887510 0011111334556666777 888899999999999999999999999999999999999998
Q ss_pred cccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004311 698 NDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 734 (762)
Q Consensus 698 ~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 734 (762)
.+..+ ...++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~-~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 165 SEYQA-FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred ceecC-CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 88744 4788999999999999999999999998764
No 470
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.16 E-value=0.017 Score=73.33 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=63.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (762)
.++=..|||.+|+||||++.+- |..-.. .+....+..+|+. ....+.| -..+-.+|||+|
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s----gl~~pl------------~~~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG 170 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS----GLKFPL------------AERLGAAALRGVG---GTRNCDWWFTDEAVLIDTAG 170 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC----CCCCcC------------chhhccccccCCC---CCcccceEecCCEEEEcCCC
Confidence 3456789999999999998765 211110 0000000011110 1112333 345778999999
Q ss_pred Cc--------CcHHHHHHHH---------HhcCEEEEEEeCCCCcchhH---HHH-------HHHH---HHcCCCEEEEE
Q 004311 150 HV--------DFTVEVERAL---------RVLDGAILVLCSVGGVQSQS---ITV-------DRQM---RRYEVPRLAFI 199 (762)
Q Consensus 150 ~~--------df~~~~~~al---------~~aD~aIlVvDa~~gv~~qt---~~~-------~~~~---~~~~~p~iivi 199 (762)
.. .-..++..-+ +-.||+|++||+.+=..... ..+ +..+ ....+|+.+++
T Consensus 171 ~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~ 250 (1169)
T TIGR03348 171 RYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVL 250 (1169)
T ss_pred ccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 42 1223343332 23799999999975432111 111 1111 12478999999
Q ss_pred eCCCCC
Q 004311 200 NKLDRM 205 (762)
Q Consensus 200 NK~D~~ 205 (762)
+|||+.
T Consensus 251 Tk~Dll 256 (1169)
T TIGR03348 251 TKADLL 256 (1169)
T ss_pred ecchhh
Confidence 999986
No 471
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.09 E-value=0.097 Score=59.32 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
-++|.|+|..++|||||+.+|.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~ 46 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQ 46 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhh
Confidence 3799999999999999999984
No 472
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.09 E-value=0.049 Score=57.66 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=46.2
Q ss_pred CeeEEEEeCCCCcCcHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHH---HH-HHcCCCEE-EEEeCCCCCCCChhHH
Q 004311 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDR---QM-RRYEVPRL-AFINKLDRMGADPWKV 212 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~-~~~al~~aD~aIlVvDa~~gv~~qt~~~~~---~~-~~~~~p~i-iviNK~D~~~~~~~~~ 212 (762)
.+.+.||||||..-.... ...++..||.+|+++.+..--......+++ .+ ...++++. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 479999999986521111 122345789999999886543333333332 22 22455654 4556522 1223445
Q ss_pred HHHHHHHhccc
Q 004311 213 LDQARSKLRHH 223 (762)
Q Consensus 213 ~~~i~~~l~~~ 223 (762)
.+++.+.++..
T Consensus 193 ~e~l~~~~~~~ 203 (275)
T TIGR01287 193 IDEFAKKLGTQ 203 (275)
T ss_pred HHHHHHHhCCc
Confidence 67777777654
No 473
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.031 Score=59.99 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChhhh-hhhcceeecceEE-------------Eee
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAATS-------------CAW 137 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~e-~~~giTi~~~~~~-------------~~~ 137 (762)
--|-++|--|+||||.+-.|.++-..- .+..-+-.........|....- ...++.+..+... |.-
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 356899999999999999887532211 0111111110011122322221 1123333222111 233
Q ss_pred cCeeEEEEeCCCCc----CcHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHV----DFTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~----df~~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (762)
+++.+.|+||.|-. .+..|+....+ ..|-+|+|+||.-|-. -+....+.+..+-+ -++++|+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa---ae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA---AEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh---HHHHHHHHHHhhccceEEEEecccC
Confidence 57899999999953 23344433322 3699999999987732 22212222223333 5789999964
No 474
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.033 Score=55.95 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.|.++|+--+||||+-....++.. . .+++-.|....+|.+.... .-..+.+||-||+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs---------P-------neTlflESTski~~d~is~----sfinf~v~dfPGQ~~ 87 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS---------P-------NETLFLESTSKITRDHISN----SFINFQVWDFPGQMD 87 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC---------C-------CceeEeeccCcccHhhhhh----hhcceEEeecCCccc
Confidence 3499999999999998775533211 1 1111222223333322211 114688999999988
Q ss_pred cHHHH---HHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHHc----CCCEEEEEeCCCCCCCC
Q 004311 153 FTVEV---ERALRVLDGAILVLCSVGGVQS-QSITVDRQMRRY----EVPRLAFINKLDRMGAD 208 (762)
Q Consensus 153 f~~~~---~~al~~aD~aIlVvDa~~gv~~-qt~~~~~~~~~~----~~p~iiviNK~D~~~~~ 208 (762)
|.... ....+.+.+.|+||||.+.... -++-+.-.++.+ ++.+=+++-|.|-...+
T Consensus 88 ~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 88 FFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred cCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 76443 5677889999999999765433 333333344444 44567999999976544
No 475
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.05 E-value=0.0056 Score=61.28 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=41.9
Q ss_pred CeeEEEEeCCCCcCcH------HHHHHHHHhcCEE---EEEEeCCC---CcchhH--HHHHHHHHHcCCCEEEEEeCCCC
Q 004311 139 DYQINIIDTPGHVDFT------VEVERALRVLDGA---ILVLCSVG---GVQSQS--ITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 139 ~~~i~liDTPG~~df~------~~~~~al~~aD~a---IlVvDa~~---gv~~qt--~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
...+.++|.||++++. ..+.+.++..|.- |-++|+.- +-..-. ...+.-+.....|.+=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 4689999999998763 3456777777754 44556532 111111 11123334568999999999997
Q ss_pred C
Q 004311 205 M 205 (762)
Q Consensus 205 ~ 205 (762)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 476
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.04 E-value=0.043 Score=57.86 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=48.5
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----HcCCCE-EEEEeCCCCCCCChhHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPR-LAFINKLDRMGADPWKV 212 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~----~~~~p~-iiviNK~D~~~~~~~~~ 212 (762)
+++.+.||||||...-. .+..++..||.+|+++.....-......+++.+. ..+++. -+|+|++|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 45899999999864311 1224688999999998764332222333333222 235654 4788999853 34
Q ss_pred HHHHHHHhccce
Q 004311 213 LDQARSKLRHHC 224 (762)
Q Consensus 213 ~~~i~~~l~~~~ 224 (762)
++++.+.++...
T Consensus 188 ~~~~~~~~~~~v 199 (268)
T TIGR01281 188 IERFNERVGMPV 199 (268)
T ss_pred HHHHHHHcCCCE
Confidence 555655555443
No 477
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.02 E-value=0.054 Score=45.60 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=46.0
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc-ccccC
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV-DCASG 448 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-~~~~G 448 (762)
....|...+.-.. + +..|+|..|+|++|..| .|. ++..+..++ ++.+++++|.+||-|++ .|. +...|
T Consensus 5 ~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe-~~~k~v~~A~~G~eVai~Ieg~~~i~eG 76 (81)
T PF14578_consen 5 GKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIE-DNGKNVDEAKKGDEVAISIEGPTQIKEG 76 (81)
T ss_dssp EEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEE-ETTEEESEEETT-EEEEEEET--TB-TT
T ss_pred eEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeE-ECCcCccccCCCCEEEEEEeCCccCCCC
Confidence 3344444444433 6 77789999999999999 343 255555555 45579999999999995 565 66778
Q ss_pred cee
Q 004311 449 DTF 451 (762)
Q Consensus 449 dtL 451 (762)
|+|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 876
No 478
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.92 E-value=0.059 Score=57.19 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=47.3
Q ss_pred cCeeEEEEeCCCCcCcHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHH---HHHHHH-cCCCEEEEEeCCCCCCCChhHH
Q 004311 138 KDYQINIIDTPGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITV---DRQMRR-YEVPRLAFINKLDRMGADPWKV 212 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~-~~~~al~~aD~aIlVvDa~~gv~~qt~~~---~~~~~~-~~~p~iiviNK~D~~~~~~~~~ 212 (762)
.++.+.||||||..-... .+..++..||.+|+++.+...-......+ +....+ .+.++..+++..... .+....
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~-~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRSV-IDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccCC-CchhHH
Confidence 368999999998542111 12234567999999999865322222222 223322 355554344433211 112356
Q ss_pred HHHHHHHhcccee
Q 004311 213 LDQARSKLRHHCA 225 (762)
Q Consensus 213 ~~~i~~~l~~~~~ 225 (762)
++++.+.++....
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 7777777776443
No 479
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.86 E-value=0.059 Score=47.25 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=56.8
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc--ccccCce
Q 004311 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV--DCASGDT 450 (762)
Q Consensus 374 ~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl--~~~~Gdt 450 (762)
.++|.....|+. |.++.+-|.+|+|++||.+...... -+|..++ ...-..+.+|.+|+.+.+.|+ ....||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~---d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMV---DENGKALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEE---CCCCCCccccCCCCCEEEeeecCCccCCCE
Confidence 356777777887 9999999999999999999875422 2444444 445567999999999999998 3567876
Q ss_pred ee
Q 004311 451 FT 452 (762)
Q Consensus 451 L~ 452 (762)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 480
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=95.64 E-value=0.15 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.-.||.++|..++|||||+..|
T Consensus 51 sgk~VlvlGdn~sGKtsLi~kl 72 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKL 72 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHh
Confidence 3479999999999999999999
No 481
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.62 E-value=0.012 Score=63.39 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++-..|+|||.+|+||||++|+|....... |-.. +|+|.......+ +..+-|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-----vg~~---------------pGvT~smqeV~L---dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-----VGNV---------------PGVTRSMQEVKL---DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcccc-----CCCC---------------ccchhhhhheec---cCCceeccCCc
Q ss_pred Cc
Q 004311 150 HV 151 (762)
Q Consensus 150 ~~ 151 (762)
.+
T Consensus 307 iv 308 (435)
T KOG2484|consen 307 IV 308 (435)
T ss_pred ee
No 482
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.55 E-value=0.079 Score=57.26 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=62.3
Q ss_pred hcceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcc-----------hhHHHHHHHHHH--
Q 004311 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-----------SQSITVDRQMRR-- 190 (762)
Q Consensus 124 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~-----------~qt~~~~~~~~~-- 190 (762)
|--|.......|.+++..+-++|.+|+..=...|......++++|+|++-++-.+ .++..++.....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 4556777778889999999999999997777778889999999999999875321 222334433332
Q ss_pred --cCCCEEEEEeCCCC
Q 004311 191 --YEVPRLAFINKLDR 204 (762)
Q Consensus 191 --~~~p~iiviNK~D~ 204 (762)
.+.++|+|+||.|+
T Consensus 259 ~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDL 274 (354)
T ss_pred ccccCcEEEEeecHHH
Confidence 36889999999998
No 483
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=95.52 E-value=0.076 Score=47.47 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=57.8
Q ss_pred EEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCe--EEEcCeEEEeecC-------ccccccccc--CCCEEEEcc
Q 004311 375 ALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHSN-------EMEDIQEAH--AGQIVAVFG 442 (762)
Q Consensus 375 ~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g~-------~~~~v~~a~--aGdIv~i~g 442 (762)
+-|.....+++ |..+-+=||+|+|+.||.|....... ..||..|+...+. ++..++++. +|--+...|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 44566667776 99999999999999999999876542 2477777776663 345777777 677677778
Q ss_pred c-ccccCceee
Q 004311 443 V-DCASGDTFT 452 (762)
Q Consensus 443 l-~~~~GdtL~ 452 (762)
| +...|+.|.
T Consensus 83 L~~v~aG~~~~ 93 (110)
T cd03703 83 LEKAIAGSPLL 93 (110)
T ss_pred CccccCCCEEE
Confidence 8 677787653
No 484
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.064 Score=57.05 Aligned_cols=129 Identities=21% Similarity=0.250 Sum_probs=67.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcc-ccccCChhhhh-hhcceeecce-----EEE--------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLER-EKGITIQSAA-----TSC-------- 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~-~~~~d~~~~e~-~~giTi~~~~-----~~~-------- 135 (762)
+.--|.++|-.|+||||.+..|.+.-..-...--+..++++ +...+.+..=- .-|+.+-... +.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35567999999999999999886432111110001111110 01111111101 1133222211 001
Q ss_pred eecCeeEEEEeCCCC----cCcHHHHHHHHHh---cCE-----EEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEe
Q 004311 136 AWKDYQINIIDTPGH----VDFTVEVERALRV---LDG-----AILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFIN 200 (762)
Q Consensus 136 ~~~~~~i~liDTPG~----~df~~~~~~al~~---aD~-----aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~-iiviN 200 (762)
.-.++.+.||||+|- .++..++..-.|. .+. +++|+||..|-. .+.|++.+ -+++ =++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceEEEE
Confidence 124689999999995 3555665544444 344 788889998743 23444433 2344 68899
Q ss_pred CCCC
Q 004311 201 KLDR 204 (762)
Q Consensus 201 K~D~ 204 (762)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9994
No 485
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.32 E-value=0.093 Score=55.38 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=32.8
Q ss_pred cCEEEEEEeCCCCcch--hHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 164 LDGAILVLCSVGGVQS--QSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 164 aD~aIlVvDa~~gv~~--qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
.|-+|+|+.+.++... +-.+.+-.+...++..+|++||+|+...
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~ 125 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD 125 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc
Confidence 6778888888776432 2344556677789999999999999643
No 486
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.063 Score=66.45 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=62.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHV 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 151 (762)
+=-.|||++|+||||++... |.-..... . ....|... ....+++| -...-.+|||.|-.
T Consensus 126 PWy~viG~pgsGKTtal~~s----gl~Fpl~~---------~------~~~~~~~~-~gT~~cdwwf~deaVlIDtaGry 185 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS----GLQFPLAE---------Q------MGALGLAG-PGTRNCDWWFTDEAVLIDTAGRY 185 (1188)
T ss_pred CceEEecCCCCCcchHHhcc----cccCcchh---------h------hccccccC-CCCcccCcccccceEEEcCCcce
Confidence 44579999999999987533 22111000 0 00011111 11233433 35678999999941
Q ss_pred ------Cc--HHHHH---------HHHHhcCEEEEEEeCCCCcchh--HH-HHH----------HHHHHcCCCEEEEEeC
Q 004311 152 ------DF--TVEVE---------RALRVLDGAILVLCSVGGVQSQ--SI-TVD----------RQMRRYEVPRLAFINK 201 (762)
Q Consensus 152 ------df--~~~~~---------~al~~aD~aIlVvDa~~gv~~q--t~-~~~----------~~~~~~~~p~iiviNK 201 (762)
++ ..++. +..+-.||+|+-+|..+=.+.. .. .+. +.......|+.+++||
T Consensus 186 ~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk 265 (1188)
T COG3523 186 ITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTK 265 (1188)
T ss_pred ecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEec
Confidence 11 12222 2334579999999987533222 11 111 1122247899999999
Q ss_pred CCCCC
Q 004311 202 LDRMG 206 (762)
Q Consensus 202 ~D~~~ 206 (762)
+|+..
T Consensus 266 ~Dll~ 270 (1188)
T COG3523 266 ADLLP 270 (1188)
T ss_pred ccccc
Confidence 99863
No 487
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.053 Score=53.41 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=59.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC-
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD- 152 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 152 (762)
+|.|+|++||||||+...|....+..+ ++.+ |....+...+...... .=.++|-.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h----lstg-------d~~r~~~~~~t~lg~~---------~k~~i~~g~lv~d 61 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH----LDTG-------DILRAAIAERTELGEE---------IKKYIDKGELVPD 61 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE----EcHh-------HHhHhhhccCChHHHH---------HHHHHHcCCccch
Confidence 689999999999999999987754432 2222 1111111111000000 001334333211
Q ss_pred --cHHHHHHHHHhcCEE-EEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEe
Q 004311 153 --FTVEVERALRVLDGA-ILVLCSVGGVQSQSITVDRQMRRYEVPRLAFIN 200 (762)
Q Consensus 153 --f~~~~~~al~~aD~a-IlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviN 200 (762)
....+...+..+|+. .+++|.-..-..|.+.+-+.+..++.+.-.++|
T Consensus 62 ~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~ 112 (178)
T COG0563 62 EIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIE 112 (178)
T ss_pred HHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEe
Confidence 123445566667744 577788777777777777777777766555544
No 488
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.00 E-value=0.054 Score=42.26 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHh-cCEEEEEEeCCCC--cchhH-HHHHHHHHH-c-CCCEEEEEeCCC
Q 004311 157 VERALRV-LDGAILVLCSVGG--VQSQS-ITVDRQMRR-Y-EVPRLAFINKLD 203 (762)
Q Consensus 157 ~~~al~~-aD~aIlVvDa~~g--v~~qt-~~~~~~~~~-~-~~p~iiviNK~D 203 (762)
...|++. .+.+++++|.++. -.... ..+++..+. + ++|+++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3455543 5788999999764 22222 234444443 4 899999999998
No 489
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.14 Score=48.74 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhHH---HHHHHHHHcCCCEEEEEeCCCC
Q 004311 155 VEVERALRVLDGAILVLCSVGGVQSQSI---TVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 155 ~~~~~al~~aD~aIlVvDa~~gv~~qt~---~~~~~~~~~~~p~iiviNK~D~ 204 (762)
..+.+|++.||++| ||=.-.++..+. ...+.+...+.|.|.++-+-++
T Consensus 92 ~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 92 PALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 34566777778654 676544444443 3455666678999999987766
No 490
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=94.90 E-value=0.13 Score=52.34 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=43.9
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH------HcCCCEEEEEeCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR------RYEVPRLAFINKLDR 204 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~------~~~~p~iiviNK~D~ 204 (762)
++.|.||||+|-..- ....++..+|.+|+-+-.+.-.-.++...++... ...+|.-|++|++.-
T Consensus 83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 468999999997653 3456778899999977666544333333333222 346899999999974
No 491
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.85 E-value=0.1 Score=52.61 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=51.0
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (762)
.+.+.|||||.... ........+.+|.+|+|+++...-........+.+.+.+.++ -+|+||.|..
T Consensus 127 ~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 48899999997422 123334557799999999998777777788888888888886 5899999974
No 492
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.79 E-value=0.047 Score=49.55 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 004311 74 NIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~L 92 (762)
.|+++|..++|||+|+.++
T Consensus 2 kvv~~G~~gvGKt~l~~~~ 20 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARF 20 (124)
T ss_pred EEEEECCCChhHHHHHHHH
Confidence 5899999999999999998
No 493
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.72 E-value=0.018 Score=61.70 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+.-..|++||.+|+||||++|.| ...+.-.|... +|-|---..+.+- .+|.|||+||
T Consensus 305 kkqISVGfiGYPNvGKSSiINTL-----R~KkVCkvAPI---------------pGETKVWQYItLm---krIfLIDcPG 361 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTL-----RKKKVCKVAPI---------------PGETKVWQYITLM---KRIFLIDCPG 361 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHH-----hhcccccccCC---------------CCcchHHHHHHHH---hceeEecCCC
Q ss_pred Cc
Q 004311 150 HV 151 (762)
Q Consensus 150 ~~ 151 (762)
.+
T Consensus 362 vV 363 (572)
T KOG2423|consen 362 VV 363 (572)
T ss_pred cc
No 494
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.7 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.+.--|+++|.-|+|||||++.|..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaa 210 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAA 210 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhc
Confidence 3456789999999999999998854
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.70 E-value=0.14 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+.|+|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.50 E-value=0.04 Score=43.99 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004311 74 NIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~ 94 (762)
...|.|+.++|||||++++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 497
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.48 E-value=0.49 Score=48.87 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.+++.+.|++|+|||+|+.++...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988643
No 498
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.41 E-value=0.25 Score=52.22 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=46.8
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHH------hcCEEEEEEeCCCCcchhHHHH----HHHHHHcCCCEE-EEEeCCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALR------VLDGAILVLCSVGGVQSQSITV----DRQMRRYEVPRL-AFINKLDRMG 206 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~------~aD~aIlVvDa~~gv~~qt~~~----~~~~~~~~~p~i-iviNK~D~~~ 206 (762)
+.|.+.||||+|.. +..++. .||.+|+++.+..--......+ .+.....+++++ +++|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--
Confidence 35899999998743 223333 7999999998753211111222 222334466654 88897431
Q ss_pred CChhHHHHHHHHHhccce
Q 004311 207 ADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 207 ~~~~~~~~~i~~~l~~~~ 224 (762)
......++++.+.++...
T Consensus 190 ~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 190 DGELELLEEFTDAIGTQM 207 (275)
T ss_pred CcHHHHHHHHHHHcCCce
Confidence 122356777777776543
No 499
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.38 E-value=0.36 Score=48.77 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=39.2
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEe
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFIN 200 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviN 200 (762)
.+.+||||.-... ......+..+|.+|+|+.+...-.......++.+. +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6899999977653 23444467799999999987766666666666666 45554 4444
No 500
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.37 E-value=0.55 Score=49.62 Aligned_cols=84 Identities=8% Similarity=-0.056 Sum_probs=46.7
Q ss_pred cCeeEEEEeCCCCcCcHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHH---HHHHH-HcCCCE-EEEEeCCCCCCCChhH
Q 004311 138 KDYQINIIDTPGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITV---DRQMR-RYEVPR-LAFINKLDRMGADPWK 211 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~-~~~~al~~aD~aIlVvDa~~gv~~qt~~~---~~~~~-~~~~p~-iiviNK~D~~~~~~~~ 211 (762)
++|.+.||||||..-... ....++..||.+|+++.+..--......+ ++... ..++++ -+++||... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 458999999998642111 11224458999999997754322222222 23332 234444 377897531 12345
Q ss_pred HHHHHHHHhccc
Q 004311 212 VLDQARSKLRHH 223 (762)
Q Consensus 212 ~~~~i~~~l~~~ 223 (762)
.++++.+.++..
T Consensus 194 ~~~~l~~~~~~~ 205 (274)
T PRK13235 194 MIEELARKIGTQ 205 (274)
T ss_pred HHHHHHHHcCCc
Confidence 667777777653
Done!