Query 004311
Match_columns 762
No_of_seqs 474 out of 2962
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 21:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 2E-138 6E-143 1231.8 70.8 683 69-755 10-708 (709)
2 2rdo_7 EF-G, elongation factor 100.0 3E-135 9E-140 1199.3 79.0 683 68-756 6-703 (704)
3 2xex_A Elongation factor G; GT 100.0 2E-133 6E-138 1183.1 78.6 683 68-756 6-691 (693)
4 1dar_A EF-G, elongation factor 100.0 1E-133 5E-138 1183.4 69.8 679 69-754 9-690 (691)
5 2dy1_A Elongation factor G; tr 100.0 5E-125 2E-129 1107.2 73.9 654 69-757 6-663 (665)
6 3j25_A Tetracycline resistance 100.0 1E-128 3E-133 1133.7 22.0 615 71-747 1-616 (638)
7 1n0u_A EF-2, elongation factor 100.0 6E-118 2E-122 1070.4 56.2 670 68-760 15-827 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 9.3E-93 3.2E-97 813.5 37.3 491 61-574 20-523 (548)
9 2ywe_A GTP-binding protein LEP 100.0 1E-81 3.5E-86 723.1 49.8 461 69-743 3-483 (600)
10 3cb4_D GTP-binding protein LEP 100.0 2.3E-80 7.8E-85 713.7 48.8 458 70-743 2-478 (599)
11 3tr5_A RF-3, peptide chain rel 100.0 1.2E-75 4.1E-80 668.2 34.6 462 68-551 9-476 (528)
12 2h5e_A Peptide chain release f 100.0 8.1E-75 2.8E-79 662.2 37.9 461 69-551 10-477 (529)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 2.4E-41 8.3E-46 354.9 19.7 196 439-749 2-209 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 2.4E-36 8.4E-41 338.6 28.8 281 69-457 14-329 (439)
15 1g7s_A Translation initiation 100.0 3.3E-37 1.1E-41 355.4 16.0 330 71-492 4-373 (594)
16 2c78_A Elongation factor TU-A; 100.0 6.9E-35 2.4E-39 324.4 26.4 272 70-455 9-308 (405)
17 1jny_A EF-1-alpha, elongation 100.0 5.8E-35 2E-39 327.6 22.9 279 70-457 4-319 (435)
18 1d2e_A Elongation factor TU (E 100.0 5.5E-35 1.9E-39 324.1 21.3 269 72-455 3-290 (397)
19 3mca_A HBS1, elongation factor 100.0 2.2E-35 7.6E-40 341.5 16.6 276 69-457 174-491 (592)
20 1r5b_A Eukaryotic peptide chai 100.0 3.6E-34 1.2E-38 323.5 20.5 279 69-456 40-357 (467)
21 3p26_A Elongation factor 1 alp 100.0 4.4E-33 1.5E-37 316.5 27.0 282 70-456 31-363 (483)
22 1zun_B Sulfate adenylate trans 100.0 3.8E-33 1.3E-37 312.9 25.3 278 70-457 22-328 (434)
23 2elf_A Protein translation elo 100.0 1.7E-33 5.9E-38 308.0 19.9 240 73-453 22-275 (370)
24 1kk1_A EIF2gamma; initiation o 100.0 8.2E-33 2.8E-37 308.1 25.2 255 70-456 8-317 (410)
25 1f60_A Elongation factor EEF1A 100.0 6.9E-33 2.3E-37 312.3 24.6 276 71-456 6-329 (458)
26 3avx_A Elongation factor TS, e 100.0 4.3E-33 1.5E-37 331.9 23.9 273 69-456 293-582 (1289)
27 3izq_1 HBS1P, elongation facto 100.0 1.2E-32 4E-37 319.6 21.4 287 70-456 165-497 (611)
28 1s0u_A EIF-2-gamma, translatio 100.0 1.4E-31 4.8E-36 297.9 25.8 255 70-456 6-315 (408)
29 1wb1_A Translation elongation 100.0 2.2E-32 7.5E-37 309.7 12.5 257 71-452 18-281 (482)
30 1zo1_I IF2, translation initia 100.0 1.3E-32 4.4E-37 309.7 7.3 308 71-519 3-342 (501)
31 3sjy_A Translation initiation 100.0 1.7E-30 5.8E-35 288.7 23.3 268 70-457 6-310 (403)
32 3izy_P Translation initiation 100.0 2.1E-31 7.2E-36 302.2 7.0 255 71-457 3-261 (537)
33 2hjg_A GTP-binding protein ENG 99.9 8.1E-22 2.8E-26 221.1 10.7 151 36-206 137-300 (436)
34 4dcu_A GTP-binding protein ENG 99.8 5.7E-21 2E-25 215.4 12.7 151 36-206 157-320 (456)
35 1wf3_A GTP-binding protein; GT 99.8 1.3E-19 4.4E-24 192.8 16.7 116 71-206 6-131 (301)
36 3iev_A GTP-binding protein ERA 99.8 4E-19 1.4E-23 189.9 17.8 115 71-205 9-135 (308)
37 1mky_A Probable GTP-binding pr 99.8 1.3E-19 4.5E-24 203.3 13.3 151 36-206 138-306 (439)
38 2dyk_A GTP-binding protein; GT 99.8 1.1E-18 3.9E-23 166.7 14.8 114 72-205 1-121 (161)
39 2lkc_A Translation initiation 99.8 2.3E-19 7.8E-24 174.7 9.3 118 70-208 6-123 (178)
40 4dhe_A Probable GTP-binding pr 99.8 1E-18 3.5E-23 177.2 12.9 119 69-206 26-158 (223)
41 1ega_A Protein (GTP-binding pr 99.8 8.7E-19 3E-23 186.6 12.3 115 71-206 7-130 (301)
42 3qq5_A Small GTP-binding prote 99.8 2.3E-19 7.9E-24 198.6 7.9 118 69-208 31-156 (423)
43 1r8s_A ADP-ribosylation factor 99.8 1.1E-17 3.7E-22 160.5 18.2 110 74-207 2-116 (164)
44 3iby_A Ferrous iron transport 99.8 9.5E-19 3.3E-23 181.8 11.3 111 72-205 1-123 (256)
45 3t1o_A Gliding protein MGLA; G 99.8 2E-18 6.9E-23 170.8 13.0 128 70-206 12-149 (198)
46 4bas_A ADP-ribosylation factor 99.8 3.6E-18 1.2E-22 169.5 14.2 117 69-207 14-142 (199)
47 1zj6_A ADP-ribosylation factor 99.8 1.2E-17 4.1E-22 164.4 16.9 113 70-206 14-131 (187)
48 2xtp_A GTPase IMAP family memb 99.8 2.9E-19 9.8E-24 186.3 5.2 203 70-297 20-257 (260)
49 1upt_A ARL1, ADP-ribosylation 99.8 4.7E-18 1.6E-22 164.1 13.4 114 70-207 5-123 (171)
50 1zd9_A ADP-ribosylation factor 99.8 1.4E-17 4.9E-22 164.2 16.9 114 71-207 21-139 (188)
51 1svi_A GTP-binding protein YSX 99.8 1.2E-17 4.1E-22 165.3 16.2 116 69-206 20-148 (195)
52 1fzq_A ADP-ribosylation factor 99.7 2.8E-17 9.5E-22 161.3 18.0 114 70-207 14-132 (181)
53 1mky_A Probable GTP-binding pr 99.7 1E-17 3.5E-22 187.9 16.8 112 73-204 2-122 (439)
54 3i8s_A Ferrous iron transport 99.7 3.5E-18 1.2E-22 179.5 11.3 109 73-204 4-124 (274)
55 2h57_A ADP-ribosylation factor 99.7 9.3E-18 3.2E-22 165.7 13.6 114 71-206 20-140 (190)
56 2b6h_A ADP-ribosylation factor 99.7 2.4E-17 8.1E-22 163.5 16.5 114 70-207 27-145 (192)
57 2hxs_A RAB-26, RAS-related pro 99.7 2.5E-17 8.5E-22 160.2 16.2 114 71-205 5-128 (178)
58 2h17_A ADP-ribosylation factor 99.7 1.3E-17 4.3E-22 163.5 14.0 113 70-206 19-136 (181)
59 2fg5_A RAB-22B, RAS-related pr 99.7 1.3E-17 4.4E-22 165.1 14.2 117 70-205 21-141 (192)
60 2il1_A RAB12; G-protein, GDP, 99.7 2.7E-17 9.3E-22 162.9 16.4 115 70-205 24-144 (192)
61 2hup_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 163.6 16.9 116 69-205 26-147 (201)
62 1r2q_A RAS-related protein RAB 99.7 1.9E-17 6.6E-22 159.3 14.5 115 72-205 6-124 (170)
63 3pqc_A Probable GTP-binding pr 99.7 3.4E-17 1.2E-21 161.6 16.5 114 70-206 21-147 (195)
64 3tkl_A RAS-related protein RAB 99.7 1.7E-17 5.7E-22 164.3 14.2 116 70-206 14-135 (196)
65 1z0f_A RAB14, member RAS oncog 99.7 3E-17 1E-21 159.6 15.6 117 70-205 13-133 (179)
66 2efe_B Small GTP-binding prote 99.7 3E-17 1E-21 160.1 15.5 116 71-205 11-130 (181)
67 3tw8_B RAS-related protein RAB 99.7 1.2E-17 4.1E-22 162.7 12.4 116 69-205 6-126 (181)
68 2p5s_A RAS and EF-hand domain 99.7 2.7E-17 9.2E-22 163.8 15.2 118 69-205 25-146 (199)
69 2y8e_A RAB-protein 6, GH09086P 99.7 5.4E-17 1.9E-21 157.7 16.8 113 72-205 14-132 (179)
70 2wji_A Ferrous iron transport 99.7 2.7E-17 9.1E-22 158.8 14.2 109 73-204 4-120 (165)
71 3k53_A Ferrous iron transport 99.7 1.7E-17 5.8E-22 174.0 13.9 111 71-204 2-121 (271)
72 1m2o_B GTP-binding protein SAR 99.7 3.5E-17 1.2E-21 161.9 14.6 111 72-206 23-138 (190)
73 1zbd_A Rabphilin-3A; G protein 99.7 2.9E-17 9.9E-22 163.9 14.0 118 70-206 6-127 (203)
74 1ek0_A Protein (GTP-binding pr 99.7 3.8E-17 1.3E-21 157.3 14.3 114 73-205 4-121 (170)
75 2fu5_C RAS-related protein RAB 99.7 1.3E-17 4.6E-22 163.2 11.3 116 70-206 6-127 (183)
76 1ksh_A ARF-like protein 2; sma 99.7 1.8E-17 6.3E-22 162.8 12.1 114 70-207 16-134 (186)
77 3a1s_A Iron(II) transport prot 99.7 1.3E-17 4.5E-22 173.4 11.6 111 71-204 4-122 (258)
78 2gf9_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 164.1 11.3 117 70-205 20-140 (189)
79 1u8z_A RAS-related protein RAL 99.7 1.8E-16 6.2E-21 152.0 18.4 112 72-205 4-122 (168)
80 2oil_A CATX-8, RAS-related pro 99.7 4.2E-17 1.5E-21 161.3 14.4 118 69-205 22-143 (193)
81 4dsu_A GTPase KRAS, isoform 2B 99.7 9.8E-17 3.3E-21 157.5 16.8 112 72-205 4-122 (189)
82 3dz8_A RAS-related protein RAB 99.7 3.8E-17 1.3E-21 161.6 13.8 118 69-205 20-141 (191)
83 1z0j_A RAB-22, RAS-related pro 99.7 5.2E-17 1.8E-21 156.4 14.4 115 72-205 6-124 (170)
84 1f6b_A SAR1; gtpases, N-termin 99.7 4.3E-17 1.5E-21 162.5 14.1 111 72-206 25-140 (198)
85 2g6b_A RAS-related protein RAB 99.7 7.2E-17 2.4E-21 157.3 15.3 117 70-206 8-130 (180)
86 2gj8_A MNME, tRNA modification 99.7 4.4E-17 1.5E-21 158.6 13.7 113 73-205 5-128 (172)
87 1g16_A RAS-related protein SEC 99.7 3.5E-17 1.2E-21 157.6 12.9 114 71-205 2-121 (170)
88 2bme_A RAB4A, RAS-related prot 99.7 3.9E-17 1.3E-21 160.2 13.4 115 70-205 8-128 (186)
89 3bc1_A RAS-related protein RAB 99.7 5.6E-17 1.9E-21 159.8 14.6 116 70-205 9-140 (195)
90 2ew1_A RAS-related protein RAB 99.7 4.8E-17 1.6E-21 162.7 14.2 116 69-205 23-144 (201)
91 2hjg_A GTP-binding protein ENG 99.7 8.7E-18 3E-22 188.3 9.2 113 73-205 4-124 (436)
92 2bov_A RAla, RAS-related prote 99.7 3E-16 1E-20 156.5 19.4 114 70-205 12-132 (206)
93 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.1E-16 3.7E-21 155.5 15.7 114 71-205 6-129 (177)
94 2a5j_A RAS-related protein RAB 99.7 7.4E-17 2.5E-21 159.5 14.7 115 70-205 19-139 (191)
95 2x77_A ADP-ribosylation factor 99.7 1.6E-17 5.6E-22 163.7 9.5 113 71-207 21-138 (189)
96 3cph_A RAS-related protein SEC 99.7 4.2E-17 1.4E-21 163.7 12.6 115 70-205 18-138 (213)
97 2a9k_A RAS-related protein RAL 99.7 3E-16 1E-20 153.5 18.4 113 71-205 17-136 (187)
98 3b1v_A Ferrous iron uptake tra 99.7 2.9E-17 9.8E-22 172.0 11.7 109 72-204 3-119 (272)
99 1moz_A ARL1, ADP-ribosylation 99.7 1.3E-17 4.5E-22 163.1 8.6 113 70-206 16-133 (183)
100 1c1y_A RAS-related protein RAP 99.7 1.5E-16 5.1E-21 152.7 15.8 113 73-205 4-121 (167)
101 2erx_A GTP-binding protein DI- 99.7 2.2E-16 7.4E-21 152.2 17.0 113 73-205 4-122 (172)
102 1kao_A RAP2A; GTP-binding prot 99.7 2.3E-16 7.7E-21 151.1 16.9 111 73-205 4-121 (167)
103 1ky3_A GTP-binding protein YPT 99.7 8.7E-17 3E-21 156.7 14.1 115 70-205 6-131 (182)
104 1z2a_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 156.0 12.4 114 71-205 4-122 (168)
105 3clv_A RAB5 protein, putative; 99.7 1.3E-16 4.4E-21 158.3 15.5 65 140-204 93-159 (208)
106 2o52_A RAS-related protein RAB 99.7 4.8E-17 1.6E-21 162.3 12.2 116 69-205 22-143 (200)
107 2fn4_A P23, RAS-related protei 99.7 2.3E-16 8E-21 153.5 16.6 114 70-205 7-127 (181)
108 2ce2_X GTPase HRAS; signaling 99.7 4.5E-16 1.5E-20 148.7 18.3 112 73-206 4-122 (166)
109 2fh5_B SR-beta, signal recogni 99.7 3.2E-16 1.1E-20 157.7 18.0 126 71-221 6-145 (214)
110 1vg8_A RAS-related protein RAB 99.7 4.2E-17 1.4E-21 163.0 11.4 115 70-205 6-130 (207)
111 3gj0_A GTP-binding nuclear pro 99.7 1.1E-17 3.7E-22 169.6 7.0 118 70-206 13-133 (221)
112 2f7s_A C25KG, RAS-related prot 99.7 4.1E-17 1.4E-21 164.7 11.2 115 70-205 23-154 (217)
113 1x3s_A RAS-related protein RAB 99.7 5.7E-17 2E-21 160.1 12.0 116 71-205 14-134 (195)
114 2bcg_Y Protein YP2, GTP-bindin 99.7 8.3E-17 2.8E-21 161.0 13.0 116 70-206 6-127 (206)
115 2nzj_A GTP-binding protein REM 99.7 1.7E-16 6E-21 153.6 14.8 116 71-206 3-125 (175)
116 3gee_A MNME, tRNA modification 99.7 3.3E-17 1.1E-21 184.4 10.9 113 73-207 234-358 (476)
117 3kkq_A RAS-related protein M-R 99.7 2.9E-16 9.9E-21 153.6 16.3 114 71-206 17-137 (183)
118 3q85_A GTP-binding protein REM 99.7 1.9E-16 6.4E-21 152.6 14.5 113 72-205 2-122 (169)
119 2wjg_A FEOB, ferrous iron tran 99.7 9.3E-17 3.2E-21 157.9 12.7 111 71-204 6-124 (188)
120 2atx_A Small GTP binding prote 99.7 1.2E-16 4E-21 158.3 13.3 114 71-206 17-136 (194)
121 1z06_A RAS-related protein RAB 99.7 1.4E-16 4.8E-21 157.1 13.8 115 70-205 18-140 (189)
122 3con_A GTPase NRAS; structural 99.7 4E-16 1.4E-20 153.7 16.3 112 73-206 22-140 (190)
123 1z08_A RAS-related protein RAB 99.7 6.4E-17 2.2E-21 155.9 10.3 114 71-205 5-124 (170)
124 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-16 4.1E-21 182.2 14.3 114 70-207 320-438 (497)
125 2qu8_A Putative nucleolar GTP- 99.7 6.6E-16 2.3E-20 157.4 18.0 115 71-206 28-156 (228)
126 3o47_A ADP-ribosylation factor 99.7 1.6E-16 5.4E-21 171.2 13.9 113 71-207 164-281 (329)
127 3t5g_A GTP-binding protein RHE 99.7 1.1E-16 3.8E-21 156.3 11.5 113 71-205 5-124 (181)
128 3q72_A GTP-binding protein RAD 99.7 4.5E-16 1.5E-20 149.5 15.2 113 73-206 3-120 (166)
129 2gf0_A GTP-binding protein DI- 99.7 7.2E-16 2.5E-20 152.8 17.1 116 71-206 7-128 (199)
130 4dcu_A GTP-binding protein ENG 99.7 4.7E-17 1.6E-21 183.4 9.3 115 71-205 22-144 (456)
131 3cpj_B GTP-binding protein YPT 99.7 1.3E-16 4.6E-21 161.9 11.6 115 70-205 11-131 (223)
132 1xzp_A Probable tRNA modificat 99.7 2.1E-16 7.1E-21 177.9 14.3 111 73-205 244-363 (482)
133 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.7E-16 5.9E-21 155.3 11.9 115 72-206 5-123 (186)
134 3l0i_B RAS-related protein RAB 99.7 8.5E-18 2.9E-22 167.5 2.5 115 70-205 31-151 (199)
135 3bwd_D RAC-like GTP-binding pr 99.7 6.9E-17 2.3E-21 157.7 8.9 116 71-206 7-126 (182)
136 3llu_A RAS-related GTP-binding 99.7 7.2E-16 2.5E-20 153.1 16.0 116 69-206 17-143 (196)
137 4gzl_A RAS-related C3 botulinu 99.7 3E-16 1E-20 157.1 13.1 115 70-206 28-148 (204)
138 3oes_A GTPase rhebl1; small GT 99.7 1.5E-16 5.1E-21 158.7 10.8 116 70-205 22-142 (201)
139 4djt_A GTP-binding nuclear pro 99.7 7.8E-17 2.7E-21 162.7 8.4 117 70-205 9-130 (218)
140 2fv8_A H6, RHO-related GTP-bin 99.7 6.2E-16 2.1E-20 155.0 14.1 113 72-206 25-143 (207)
141 3lxw_A GTPase IMAP family memb 99.7 5.9E-16 2E-20 159.9 14.2 119 71-209 20-156 (247)
142 3reg_A RHO-like small GTPase; 99.7 4.4E-16 1.5E-20 154.2 12.5 115 70-206 21-141 (194)
143 2j1l_A RHO-related GTP-binding 99.6 8.6E-16 3E-20 154.9 14.3 115 70-206 32-152 (214)
144 2yc2_C IFT27, small RAB-relate 99.6 1.5E-16 5.1E-21 158.8 8.4 116 71-205 19-145 (208)
145 3geh_A MNME, tRNA modification 99.6 9.1E-17 3.1E-21 180.1 7.3 112 73-206 225-344 (462)
146 2j0v_A RAC-like GTP-binding pr 99.6 3.9E-16 1.3E-20 156.8 11.3 113 71-205 8-126 (212)
147 4dkx_A RAS-related protein RAB 99.6 2.1E-15 7.1E-20 152.5 16.4 114 73-205 14-131 (216)
148 2q3h_A RAS homolog gene family 99.6 3.7E-16 1.3E-20 155.5 10.7 115 70-206 18-138 (201)
149 3cbq_A GTP-binding protein REM 99.6 2.6E-15 8.8E-20 149.2 16.6 116 70-206 21-144 (195)
150 2gco_A H9, RHO-related GTP-bin 99.6 1.1E-15 3.9E-20 152.3 13.8 113 72-206 25-143 (201)
151 2cxx_A Probable GTP-binding pr 99.6 1.4E-15 4.8E-20 149.4 12.8 110 73-207 2-137 (190)
152 3ihw_A Centg3; RAS, centaurin, 99.6 3.6E-15 1.2E-19 146.7 15.7 107 71-205 19-132 (184)
153 2atv_A RERG, RAS-like estrogen 99.6 5.5E-15 1.9E-19 146.6 16.6 114 71-205 27-145 (196)
154 3c5c_A RAS-like protein 12; GD 99.6 3.8E-15 1.3E-19 146.8 13.3 115 70-205 19-140 (187)
155 2iwr_A Centaurin gamma 1; ANK 99.6 8.5E-15 2.9E-19 142.4 15.3 106 72-205 7-121 (178)
156 3q3j_B RHO-related GTP-binding 99.6 1.4E-15 4.8E-20 153.5 9.6 115 71-205 26-144 (214)
157 3lxx_A GTPase IMAP family memb 99.6 4.6E-16 1.6E-20 159.8 6.0 141 69-229 26-190 (239)
158 1m7b_A RND3/RHOE small GTP-bin 99.6 3.2E-15 1.1E-19 146.7 11.5 116 70-205 5-124 (184)
159 1lnz_A SPO0B-associated GTP-bi 99.6 1.9E-15 6.3E-20 163.0 10.5 114 71-205 157-287 (342)
160 3t5d_A Septin-7; GTP-binding p 99.6 4.5E-15 1.5E-19 155.8 13.0 120 72-205 8-157 (274)
161 1jwy_B Dynamin A GTPase domain 99.6 3.1E-15 1.1E-19 160.1 11.8 69 138-206 129-212 (315)
162 2p67_A LAO/AO transport system 99.6 1.8E-15 6.2E-20 163.8 10.1 243 69-341 53-329 (341)
163 3r7w_A Gtpase1, GTP-binding pr 99.6 9.9E-15 3.4E-19 155.7 15.3 114 73-206 4-129 (307)
164 1gwn_A RHO-related GTP-binding 99.6 4.3E-15 1.5E-19 148.9 11.5 116 70-205 26-145 (205)
165 3th5_A RAS-related C3 botulinu 99.3 2E-16 6.8E-21 158.1 0.0 115 70-206 28-148 (204)
166 2aka_B Dynamin-1; fusion prote 99.6 9.1E-15 3.1E-19 155.1 11.8 136 71-206 25-206 (299)
167 2qtf_A Protein HFLX, GTP-bindi 99.5 4.4E-14 1.5E-18 153.8 14.9 115 71-206 178-306 (364)
168 2wkq_A NPH1-1, RAS-related C3 99.5 1.7E-14 5.9E-19 155.0 11.5 115 70-206 153-273 (332)
169 2e87_A Hypothetical protein PH 99.5 4.4E-14 1.5E-18 154.0 14.6 114 71-205 166-293 (357)
170 2g3y_A GTP-binding protein GEM 99.5 7.3E-14 2.5E-18 140.6 14.1 116 70-205 35-158 (211)
171 2zej_A Dardarin, leucine-rich 99.5 4.7E-14 1.6E-18 138.5 10.9 115 73-206 3-126 (184)
172 2cjw_A GTP-binding protein GEM 99.5 2.4E-13 8.2E-18 134.6 14.5 115 71-205 5-127 (192)
173 1nrj_B SR-beta, signal recogni 99.5 3.5E-13 1.2E-17 135.7 15.6 115 70-209 10-137 (218)
174 3dpu_A RAB family protein; roc 99.5 5.4E-14 1.8E-18 161.6 10.3 116 70-206 39-164 (535)
175 3def_A T7I23.11 protein; chlor 99.5 3.6E-13 1.2E-17 140.3 13.8 115 71-205 35-164 (262)
176 2f9l_A RAB11B, member RAS onco 99.5 2E-13 7E-18 135.6 11.3 113 72-205 5-123 (199)
177 1pui_A ENGB, probable GTP-bind 99.4 6.2E-13 2.1E-17 133.0 14.0 114 70-205 24-150 (210)
178 2qag_A Septin-2, protein NEDD5 99.4 4.2E-13 1.4E-17 146.2 11.8 121 72-205 37-187 (361)
179 2wsm_A Hydrogenase expression/ 99.4 3.2E-13 1.1E-17 136.4 9.9 127 69-205 27-167 (221)
180 3p32_A Probable GTPase RV1496/ 99.4 2.5E-13 8.7E-18 147.8 9.5 129 70-205 77-230 (355)
181 1h65_A Chloroplast outer envel 99.4 2.2E-12 7.4E-17 134.9 16.2 117 71-207 38-169 (270)
182 2j69_A Bacterial dynamin-like 99.4 1.3E-12 4.4E-17 154.0 14.5 66 140-205 174-243 (695)
183 1oix_A RAS-related protein RAB 99.4 1.1E-12 3.7E-17 129.6 10.7 115 70-205 27-147 (191)
184 2ged_A SR-beta, signal recogni 99.4 9.3E-13 3.2E-17 129.8 9.8 126 70-220 46-185 (193)
185 1wxq_A GTP-binding protein; st 99.4 1.6E-13 5.5E-18 151.0 4.1 82 74-176 2-114 (397)
186 2x2e_A Dynamin-1; nitration, h 99.4 5.1E-13 1.8E-17 145.3 7.8 137 70-206 29-211 (353)
187 3r7w_B Gtpase2, GTP-binding pr 99.3 6.5E-12 2.2E-16 133.1 14.0 112 74-207 1-121 (331)
188 1udx_A The GTP-binding protein 99.3 4.6E-12 1.6E-16 139.7 12.6 115 70-205 155-282 (416)
189 3c5h_A Glucocorticoid receptor 99.3 6.5E-13 2.2E-17 137.7 5.3 43 163-205 162-211 (255)
190 2qpt_A EH domain-containing pr 99.3 4.7E-12 1.6E-16 145.1 12.7 138 69-206 62-232 (550)
191 3zvr_A Dynamin-1; hydrolase, D 99.3 3.3E-12 1.1E-16 149.4 10.4 137 70-206 49-231 (772)
192 4a9a_A Ribosome-interacting GT 99.3 2.2E-11 7.7E-16 132.1 15.8 113 72-206 72-196 (376)
193 2www_A Methylmalonic aciduria 99.2 5.9E-12 2E-16 136.4 7.5 62 137-205 164-225 (349)
194 1yrb_A ATP(GTP)binding protein 99.2 3.4E-11 1.1E-15 124.9 10.6 67 139-206 108-185 (262)
195 2j37_W Signal recognition part 99.2 2.7E-11 9.4E-16 136.4 10.0 149 70-223 99-269 (504)
196 3t34_A Dynamin-related protein 99.1 1.6E-10 5.4E-15 126.0 12.5 68 139-206 135-217 (360)
197 1jal_A YCHF protein; nucleotid 99.1 5.9E-10 2E-14 120.2 15.0 82 73-175 3-108 (363)
198 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-10 8.1E-15 123.2 6.5 63 136-205 144-206 (337)
199 2dby_A GTP-binding protein; GD 99.0 1.7E-08 5.7E-13 109.6 20.3 82 73-175 2-111 (368)
200 2hf9_A Probable hydrogenase ni 98.9 2.4E-09 8.1E-14 108.2 10.7 127 70-205 36-177 (226)
201 2qnr_A Septin-2, protein NEDD5 98.9 1.8E-09 6.3E-14 114.4 10.0 120 73-205 19-168 (301)
202 2qag_C Septin-7; cell cycle, c 98.9 3.9E-09 1.3E-13 116.4 11.9 117 73-205 32-180 (418)
203 2xxa_A Signal recognition part 98.9 1.7E-08 5.8E-13 112.0 16.4 223 70-321 98-350 (433)
204 3ec1_A YQEH GTPase; atnos1, at 98.8 2.6E-10 9.1E-15 124.4 -2.6 158 40-223 138-306 (369)
205 3h2y_A GTPase family protein; 98.8 7.5E-10 2.5E-14 120.7 0.1 158 40-223 136-305 (368)
206 3kl4_A SRP54, signal recogniti 98.8 6.7E-08 2.3E-12 106.6 15.4 218 71-318 96-346 (433)
207 2v3c_C SRP54, signal recogniti 98.7 2.9E-08 1E-12 110.0 10.2 148 71-223 98-267 (432)
208 1cip_A Protein (guanine nucleo 98.7 1E-08 3.5E-13 110.7 6.3 80 125-204 178-272 (353)
209 1zcb_A G alpha I/13; GTP-bindi 98.6 4E-08 1.4E-12 106.4 8.1 79 126-204 187-280 (362)
210 1tq4_A IIGP1, interferon-induc 98.6 6.9E-07 2.4E-11 98.1 16.2 112 73-204 70-187 (413)
211 2ohf_A Protein OLA1, GTP-bindi 98.6 6E-08 2.1E-12 105.6 7.4 82 73-175 23-128 (396)
212 3e1y_E Eukaryotic peptide chai 98.5 1.6E-07 5.4E-12 93.5 8.4 84 369-457 3-91 (204)
213 2qag_B Septin-6, protein NEDD5 98.5 3.9E-07 1.3E-11 100.1 10.7 135 71-223 41-208 (427)
214 3dm5_A SRP54, signal recogniti 98.4 1E-05 3.5E-10 89.2 21.4 219 71-318 99-346 (443)
215 4fid_A G protein alpha subunit 98.4 4.2E-07 1.4E-11 97.1 8.6 82 124-205 145-241 (340)
216 3ohm_A Guanine nucleotide-bind 98.4 4.7E-07 1.6E-11 96.4 8.8 81 124-204 151-246 (327)
217 1azs_C GS-alpha; complex (lyas 98.3 4.6E-07 1.6E-11 99.0 7.4 78 127-204 204-296 (402)
218 3sop_A Neuronal-specific septi 98.3 1.9E-06 6.6E-11 89.5 11.8 138 73-221 3-170 (270)
219 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.1E-06 3.9E-11 95.8 9.5 84 72-175 20-127 (392)
220 3l82_B F-box only protein 4; T 98.3 1.8E-06 6.1E-11 84.8 9.0 59 149-207 111-178 (227)
221 2xtz_A Guanine nucleotide-bind 98.3 6.8E-07 2.3E-11 96.4 6.5 67 138-204 181-262 (354)
222 1u0l_A Probable GTPase ENGC; p 98.2 5.8E-07 2E-11 95.1 5.2 63 141-205 64-128 (301)
223 1f5n_A Interferon-induced guan 98.1 1.9E-06 6.5E-11 98.6 6.1 100 70-191 36-148 (592)
224 1j8m_F SRP54, signal recogniti 98.1 2.9E-06 1E-10 89.4 6.9 129 72-205 98-252 (297)
225 1puj_A YLQF, conserved hypothe 98.1 2.5E-06 8.4E-11 89.3 6.2 60 144-205 3-63 (282)
226 3l2o_B F-box only protein 4; s 98.0 1.7E-05 5.8E-10 81.6 9.8 60 148-207 195-263 (312)
227 4dzz_A Plasmid partitioning pr 98.0 4.9E-05 1.7E-09 74.9 12.7 82 139-224 75-161 (206)
228 1puj_A YLQF, conserved hypothe 97.9 3.4E-06 1.2E-10 88.2 3.7 90 40-152 82-177 (282)
229 3ec1_A YQEH GTPase; atnos1, at 97.9 2.5E-05 8.5E-10 84.9 9.2 63 141-206 50-112 (369)
230 2yv5_A YJEQ protein; hydrolase 97.8 8.5E-06 2.9E-10 86.1 4.2 56 150-205 66-123 (302)
231 3cnl_A YLQF, putative uncharac 97.8 9.3E-06 3.2E-10 83.9 3.0 55 147-205 4-59 (262)
232 3h2y_A GTPase family protein; 97.6 7.6E-05 2.6E-09 81.0 7.9 56 149-206 55-110 (368)
233 3cnl_A YLQF, putative uncharac 97.6 2.6E-05 8.9E-10 80.6 3.5 58 73-153 100-157 (262)
234 1zu4_A FTSY; GTPase, signal re 97.5 0.00025 8.6E-09 75.3 10.4 80 138-224 190-284 (320)
235 3cwq_A Para family chromosome 97.5 0.00019 6.4E-09 71.4 8.2 83 138-223 66-151 (209)
236 2ffh_A Protein (FFH); SRP54, s 97.5 0.00021 7.2E-09 78.6 9.0 148 71-223 97-266 (425)
237 3e70_C DPA, signal recognition 97.5 0.00018 6.1E-09 76.7 7.8 130 70-205 127-281 (328)
238 3szr_A Interferon-induced GTP- 97.4 0.00029 1E-08 81.5 9.4 69 139-207 146-229 (608)
239 3kjh_A CO dehydrogenase/acetyl 97.4 0.00063 2.2E-08 68.9 11.0 87 137-230 129-216 (254)
240 2yhs_A FTSY, cell division pro 97.4 0.00034 1.2E-08 77.8 9.4 143 71-222 292-466 (503)
241 2oze_A ORF delta'; para, walke 97.3 0.00082 2.8E-08 70.4 10.9 82 139-222 154-242 (298)
242 1vma_A Cell division protein F 97.2 0.00028 9.7E-09 74.3 6.3 146 71-224 103-279 (306)
243 1rj9_A FTSY, signal recognitio 97.2 0.0012 4E-08 69.6 10.7 147 71-223 101-276 (304)
244 3end_A Light-independent proto 97.2 0.0019 6.4E-08 68.0 11.7 82 138-225 155-241 (307)
245 1ls1_A Signal recognition part 97.1 0.00059 2E-08 71.6 7.3 146 71-223 97-266 (295)
246 1xe1_A Hypothetical protein PF 97.1 0.0021 7.3E-08 56.4 9.0 76 370-452 32-112 (116)
247 2px0_A Flagellar biosynthesis 97.0 0.00082 2.8E-08 70.5 7.1 129 71-205 104-252 (296)
248 3q5d_A Atlastin-1; G protein, 96.9 0.0027 9.1E-08 70.2 10.2 26 70-95 65-90 (447)
249 1t9h_A YLOQ, probable GTPase E 96.7 0.00085 2.9E-08 70.6 3.6 47 160-206 83-131 (307)
250 3k9g_A PF-32 protein; ssgcid, 96.6 0.0064 2.2E-07 62.4 10.2 65 138-204 143-209 (267)
251 3q9l_A Septum site-determining 96.6 0.0034 1.2E-07 64.0 7.8 84 139-224 113-207 (260)
252 3ea0_A ATPase, para family; al 96.6 0.044 1.5E-06 55.0 16.0 81 139-224 118-201 (245)
253 2xj4_A MIPZ; replication, cell 96.6 0.0012 4E-08 68.9 3.9 78 139-218 103-205 (286)
254 2cve_A Hypothetical protein TT 96.5 0.016 5.5E-07 55.8 11.3 111 620-733 80-190 (191)
255 3cio_A ETK, tyrosine-protein k 96.4 0.012 4.1E-07 61.7 10.8 66 139-205 213-279 (299)
256 3b9q_A Chloroplast SRP recepto 96.3 0.012 4E-07 61.8 10.0 128 71-205 99-259 (302)
257 1t9h_A YLOQ, probable GTPase E 96.3 0.0012 4E-08 69.5 2.2 21 73-93 174-194 (307)
258 2ph1_A Nucleotide-binding prot 96.3 0.012 4.2E-07 60.1 9.6 87 138-224 127-222 (262)
259 2yv5_A YJEQ protein; hydrolase 96.2 0.0038 1.3E-07 65.6 5.5 21 73-93 166-186 (302)
260 3la6_A Tyrosine-protein kinase 96.2 0.021 7.1E-07 59.4 10.7 67 139-206 201-268 (286)
261 1vi7_A Hypothetical protein YI 96.1 0.014 4.8E-07 57.4 8.4 112 620-734 92-203 (217)
262 2afh_E Nitrogenase iron protei 96.0 0.035 1.2E-06 57.5 11.8 84 139-224 118-207 (289)
263 2og2_A Putative signal recogni 96.0 0.02 6.8E-07 61.5 9.8 128 71-205 156-316 (359)
264 1wcv_1 SOJ, segregation protei 96.0 0.022 7.6E-07 58.0 9.9 85 138-224 110-201 (257)
265 1d1n_A Initiation factor 2; be 95.8 0.021 7.1E-07 48.7 6.9 73 376-452 10-89 (99)
266 1cp2_A CP2, nitrogenase iron p 95.8 0.036 1.2E-06 56.6 10.3 84 139-224 115-204 (269)
267 2rcn_A Probable GTPase ENGC; Y 95.4 0.029 9.8E-07 60.1 8.2 44 160-205 127-173 (358)
268 1hyq_A MIND, cell division inh 95.4 0.034 1.2E-06 56.6 8.4 81 139-223 110-191 (263)
269 1g3q_A MIND ATPase, cell divis 95.1 0.05 1.7E-06 54.3 8.5 81 139-223 111-192 (237)
270 1u0l_A Probable GTPase ENGC; p 95.0 0.011 3.7E-07 62.1 3.2 22 73-94 170-191 (301)
271 2rcn_A Probable GTPase ENGC; Y 94.8 0.014 4.8E-07 62.6 3.5 22 73-94 216-237 (358)
272 1bif_A 6-phosphofructo-2-kinas 94.3 0.012 4.2E-07 65.7 1.7 107 72-198 39-155 (469)
273 2crv_A IF-2MT, translation ini 94.2 0.13 4.5E-06 45.3 7.6 63 386-452 25-97 (120)
274 3ug7_A Arsenical pump-driving 94.1 0.32 1.1E-05 51.9 12.3 60 164-223 237-307 (349)
275 3bfv_A CAPA1, CAPB2, membrane 93.9 0.09 3.1E-06 54.1 7.1 66 139-205 191-257 (271)
276 1byi_A Dethiobiotin synthase; 93.7 0.36 1.2E-05 47.4 10.9 93 138-231 107-205 (224)
277 4ido_A Atlastin-1; GTPase, GTP 93.5 0.23 8E-06 54.5 9.8 114 69-188 64-193 (457)
278 1ye8_A Protein THEP1, hypothet 93.5 0.041 1.4E-06 52.8 3.4 24 74-97 2-25 (178)
279 3lh2_S 4E10_1VI7A_S0_002_N (T8 93.3 0.059 2E-06 43.9 3.6 63 670-733 8-70 (76)
280 1lvg_A Guanylate kinase, GMP k 93.2 0.042 1.4E-06 53.6 3.0 23 73-95 5-27 (198)
281 1kgd_A CASK, peripheral plasma 93.1 0.051 1.8E-06 52.0 3.4 23 73-95 6-28 (180)
282 3zq6_A Putative arsenical pump 92.9 0.42 1.4E-05 50.3 10.6 59 165-223 223-292 (324)
283 2yvu_A Probable adenylyl-sulfa 92.7 0.64 2.2E-05 44.2 10.7 25 71-95 12-36 (186)
284 3a00_A Guanylate kinase, GMP k 92.4 0.058 2E-06 51.9 2.8 23 73-95 2-24 (186)
285 1znw_A Guanylate kinase, GMP k 92.2 0.072 2.5E-06 52.2 3.2 25 72-96 20-44 (207)
286 3tr0_A Guanylate kinase, GMP k 92.2 0.074 2.5E-06 51.6 3.3 24 73-96 8-31 (205)
287 3ney_A 55 kDa erythrocyte memb 92.0 0.097 3.3E-06 51.1 3.9 27 71-97 18-44 (197)
288 1zp6_A Hypothetical protein AT 92.0 0.092 3.1E-06 50.4 3.7 24 71-94 8-31 (191)
289 1kag_A SKI, shikimate kinase I 91.8 0.09 3.1E-06 49.5 3.3 25 73-97 5-29 (173)
290 3kb2_A SPBC2 prophage-derived 91.8 0.097 3.3E-06 49.1 3.6 25 73-97 2-26 (173)
291 3iqw_A Tail-anchored protein t 91.8 1.4 4.7E-05 46.6 12.8 58 165-222 223-293 (334)
292 3zvl_A Bifunctional polynucleo 91.7 0.55 1.9E-05 51.3 9.9 26 71-96 257-282 (416)
293 1z6g_A Guanylate kinase; struc 91.7 0.088 3E-06 52.2 3.2 25 72-96 23-47 (218)
294 3sr0_A Adenylate kinase; phosp 91.7 0.071 2.4E-06 52.5 2.5 103 74-195 2-104 (206)
295 1knq_A Gluconate kinase; ALFA/ 91.7 0.13 4.4E-06 48.6 4.2 27 72-98 8-34 (175)
296 3c8u_A Fructokinase; YP_612366 91.6 0.1 3.5E-06 51.1 3.6 24 71-94 21-44 (208)
297 1np6_A Molybdopterin-guanine d 91.5 0.12 4E-06 49.4 3.8 24 72-95 6-29 (174)
298 4eun_A Thermoresistant glucoki 91.5 0.11 3.9E-06 50.4 3.8 29 71-99 28-56 (200)
299 4gp7_A Metallophosphoesterase; 91.5 0.09 3.1E-06 49.9 2.9 21 73-93 10-30 (171)
300 1s96_A Guanylate kinase, GMP k 91.3 0.1 3.6E-06 51.8 3.3 26 71-96 15-40 (219)
301 1htw_A HI0065; nucleotide-bind 91.3 0.11 3.8E-06 48.8 3.2 26 71-96 32-57 (158)
302 1xjc_A MOBB protein homolog; s 91.2 0.13 4.4E-06 48.9 3.6 24 71-94 3-26 (169)
303 1ex7_A Guanylate kinase; subst 91.1 0.11 3.8E-06 50.2 3.1 24 73-96 2-25 (186)
304 3ez9_A Para; DNA binding, wing 91.1 0.31 1E-05 53.1 7.1 90 138-230 246-347 (403)
305 3tau_A Guanylate kinase, GMP k 91.0 0.13 4.5E-06 50.4 3.7 25 72-96 8-32 (208)
306 3lw7_A Adenylate kinase relate 91.0 0.14 4.8E-06 47.8 3.7 25 73-98 2-26 (179)
307 3asz_A Uridine kinase; cytidin 90.9 0.15 5.1E-06 49.8 4.0 24 72-95 6-29 (211)
308 3vaa_A Shikimate kinase, SK; s 90.7 0.16 5.6E-06 49.2 4.0 28 71-98 24-51 (199)
309 2bdt_A BH3686; alpha-beta prot 90.6 0.14 4.9E-06 49.0 3.5 22 73-94 3-24 (189)
310 2j41_A Guanylate kinase; GMP, 90.6 0.14 4.9E-06 49.6 3.5 23 73-95 7-29 (207)
311 2ghi_A Transport protein; mult 90.6 0.16 5.4E-06 51.9 3.9 23 71-93 45-67 (260)
312 3tif_A Uncharacterized ABC tra 90.6 0.12 4E-06 52.0 2.9 22 71-92 30-51 (235)
313 2pcj_A ABC transporter, lipopr 90.6 0.13 4.3E-06 51.3 3.1 20 73-92 31-50 (224)
314 2f1r_A Molybdopterin-guanine d 90.5 0.083 2.8E-06 50.3 1.6 22 73-94 3-24 (171)
315 2cvh_A DNA repair and recombin 90.5 1.4 4.8E-05 42.8 10.7 22 73-94 21-42 (220)
316 3fgn_A Dethiobiotin synthetase 90.4 5.2 0.00018 40.2 15.1 65 139-203 126-197 (251)
317 3a4m_A L-seryl-tRNA(SEC) kinas 90.4 0.67 2.3E-05 47.0 8.5 24 72-95 4-27 (260)
318 3trf_A Shikimate kinase, SK; a 90.3 0.17 6E-06 48.1 3.8 26 72-97 5-30 (185)
319 2qor_A Guanylate kinase; phosp 90.3 0.15 5E-06 49.8 3.2 26 71-96 11-36 (204)
320 2bbw_A Adenylate kinase 4, AK4 90.2 0.17 5.9E-06 50.9 3.8 28 72-99 27-54 (246)
321 3t61_A Gluconokinase; PSI-biol 90.2 0.16 5.4E-06 49.3 3.4 27 72-98 18-44 (202)
322 2onk_A Molybdate/tungstate ABC 90.0 0.15 5.1E-06 51.4 3.0 23 70-93 23-45 (240)
323 2if2_A Dephospho-COA kinase; a 89.9 0.17 5.6E-06 49.2 3.3 22 73-94 2-23 (204)
324 1ly1_A Polynucleotide kinase; 89.8 0.17 5.9E-06 47.7 3.3 22 73-94 3-24 (181)
325 1jjv_A Dephospho-COA kinase; P 89.8 0.17 5.9E-06 49.2 3.3 22 73-94 3-24 (206)
326 3iij_A Coilin-interacting nucl 89.7 0.21 7.1E-06 47.4 3.7 27 71-97 10-36 (180)
327 4a1f_A DNAB helicase, replicat 89.7 0.46 1.6E-05 50.4 6.6 23 73-95 47-69 (338)
328 2woo_A ATPase GET3; tail-ancho 89.6 2.2 7.4E-05 44.9 12.0 40 165-204 222-262 (329)
329 2v9p_A Replication protein E1; 89.6 0.18 6.1E-06 52.7 3.4 26 70-95 124-149 (305)
330 2eyu_A Twitching motility prot 89.6 0.19 6.5E-06 51.3 3.5 24 71-94 24-47 (261)
331 3b85_A Phosphate starvation-in 89.6 0.15 5E-06 50.3 2.6 23 73-95 23-45 (208)
332 3ec2_A DNA replication protein 89.5 0.17 5.9E-06 48.1 2.9 23 72-94 38-60 (180)
333 2i3b_A HCR-ntpase, human cance 89.5 0.19 6.4E-06 48.7 3.2 22 74-95 3-24 (189)
334 1cke_A CK, MSSA, protein (cyti 89.5 0.2 6.9E-06 49.4 3.6 25 73-97 6-30 (227)
335 1nks_A Adenylate kinase; therm 89.4 0.2 7E-06 47.7 3.5 23 73-95 2-24 (194)
336 2cbz_A Multidrug resistance-as 89.4 0.17 5.7E-06 51.0 2.9 22 71-92 30-51 (237)
337 4g1u_C Hemin import ATP-bindin 89.4 0.16 5.6E-06 51.9 2.9 23 71-93 36-58 (266)
338 1b0u_A Histidine permease; ABC 89.4 0.16 5.6E-06 51.8 2.9 22 71-92 31-52 (262)
339 1g6h_A High-affinity branched- 89.4 0.16 5.6E-06 51.6 2.9 21 72-92 33-53 (257)
340 2pze_A Cystic fibrosis transme 89.4 0.17 5.7E-06 50.6 2.9 23 71-93 33-55 (229)
341 1qhx_A CPT, protein (chloramph 89.3 0.23 7.8E-06 46.9 3.7 25 73-97 4-28 (178)
342 2d2e_A SUFC protein; ABC-ATPas 89.3 0.18 6.1E-06 51.1 3.1 22 72-93 29-50 (250)
343 3gfo_A Cobalt import ATP-bindi 89.3 0.17 5.7E-06 52.2 2.9 21 73-93 35-55 (275)
344 1ukz_A Uridylate kinase; trans 89.3 0.28 9.6E-06 47.5 4.4 29 70-98 13-41 (203)
345 1mv5_A LMRA, multidrug resista 89.3 0.17 5.9E-06 51.0 2.9 23 71-93 27-49 (243)
346 1sgw_A Putative ABC transporte 89.2 0.18 6E-06 49.9 2.9 21 73-93 36-56 (214)
347 2jaq_A Deoxyguanosine kinase; 89.2 0.23 7.7E-06 47.9 3.6 24 74-97 2-25 (205)
348 2vhj_A Ntpase P4, P4; non- hyd 89.2 0.58 2E-05 49.1 6.8 23 73-95 124-146 (331)
349 1uf9_A TT1252 protein; P-loop, 89.2 0.29 1E-05 47.1 4.4 25 71-95 7-31 (203)
350 1ji0_A ABC transporter; ATP bi 89.2 0.18 6.1E-06 50.8 2.9 21 72-92 32-52 (240)
351 2ff7_A Alpha-hemolysin translo 89.1 0.18 6.1E-06 51.1 2.9 21 72-92 35-55 (247)
352 3uie_A Adenylyl-sulfate kinase 89.0 0.24 8.2E-06 48.0 3.6 26 70-95 23-48 (200)
353 2rhm_A Putative kinase; P-loop 89.0 0.3 1E-05 46.6 4.3 26 72-97 5-30 (193)
354 2jeo_A Uridine-cytidine kinase 88.9 0.21 7.2E-06 50.2 3.3 27 71-97 24-50 (245)
355 3fb4_A Adenylate kinase; psych 88.9 0.26 8.8E-06 48.3 3.8 25 74-98 2-26 (216)
356 2olj_A Amino acid ABC transpor 88.9 0.19 6.4E-06 51.4 2.9 22 71-92 49-70 (263)
357 3lnc_A Guanylate kinase, GMP k 88.9 0.14 4.7E-06 51.0 1.8 22 72-93 27-48 (231)
358 1y63_A LMAJ004144AAA protein; 88.9 0.29 9.9E-06 46.8 4.1 25 71-95 9-33 (184)
359 3dl0_A Adenylate kinase; phosp 88.9 0.27 9.2E-06 48.2 3.9 25 74-98 2-26 (216)
360 3cm0_A Adenylate kinase; ATP-b 88.9 0.26 9E-06 46.8 3.8 25 73-97 5-29 (186)
361 2qt1_A Nicotinamide riboside k 88.8 0.27 9.1E-06 47.9 3.8 25 71-95 20-44 (207)
362 4fcw_A Chaperone protein CLPB; 88.8 1.8 6.1E-05 44.7 10.5 24 72-95 47-70 (311)
363 1nij_A Hypothetical protein YJ 88.7 0.22 7.4E-06 52.4 3.3 25 71-95 3-27 (318)
364 2ehv_A Hypothetical protein PH 88.7 0.21 7.1E-06 50.0 3.0 22 72-93 30-51 (251)
365 2zu0_C Probable ATP-dependent 88.7 0.21 7E-06 51.2 3.0 23 71-93 45-67 (267)
366 1via_A Shikimate kinase; struc 88.7 0.24 8.3E-06 46.8 3.3 25 73-97 5-29 (175)
367 2qi9_C Vitamin B12 import ATP- 88.6 0.2 6.9E-06 50.8 2.9 21 72-92 26-46 (249)
368 4a74_A DNA repair and recombin 88.6 0.24 8.2E-06 48.8 3.4 22 73-94 26-47 (231)
369 3aez_A Pantothenate kinase; tr 88.6 0.28 9.6E-06 51.5 4.0 25 70-94 88-112 (312)
370 2wbm_A MTHSBDS, ribosome matur 88.6 0.88 3E-05 45.5 7.3 66 668-734 183-249 (252)
371 1vpl_A ABC transporter, ATP-bi 88.6 0.2 7E-06 50.9 2.9 23 71-93 40-62 (256)
372 1zo1_I IF2, translation initia 88.4 1.2 4E-05 49.9 9.1 73 377-453 413-492 (501)
373 1kht_A Adenylate kinase; phosp 88.3 0.25 8.4E-06 47.1 3.2 23 73-95 4-26 (192)
374 2ixe_A Antigen peptide transpo 88.3 0.22 7.4E-06 51.2 2.9 22 71-92 44-65 (271)
375 2c95_A Adenylate kinase 1; tra 88.3 0.32 1.1E-05 46.5 4.0 27 71-97 8-34 (196)
376 2yz2_A Putative ABC transporte 88.3 0.22 7.5E-06 51.0 2.9 22 71-92 32-53 (266)
377 2ihy_A ABC transporter, ATP-bi 88.2 0.22 7.6E-06 51.3 2.9 21 72-92 47-67 (279)
378 2gza_A Type IV secretion syste 88.1 0.23 7.9E-06 53.3 3.0 24 71-94 174-197 (361)
379 2nq2_C Hypothetical ABC transp 88.0 0.23 7.8E-06 50.5 2.8 21 73-93 32-52 (253)
380 1tev_A UMP-CMP kinase; ploop, 88.0 0.32 1.1E-05 46.4 3.7 25 73-97 4-28 (196)
381 1ihu_A Arsenical pump-driving 87.9 1.7 5.7E-05 49.8 10.3 135 69-203 5-238 (589)
382 3n70_A Transport activator; si 87.9 0.9 3.1E-05 41.4 6.6 24 71-94 23-46 (145)
383 1zuh_A Shikimate kinase; alpha 87.8 0.33 1.1E-05 45.4 3.7 27 71-97 6-32 (168)
384 2kjq_A DNAA-related protein; s 87.8 0.24 8.4E-06 45.8 2.7 24 72-95 36-59 (149)
385 3of5_A Dethiobiotin synthetase 87.6 1.7 5.8E-05 43.1 8.9 87 138-224 109-201 (228)
386 3kta_A Chromosome segregation 87.5 0.32 1.1E-05 46.2 3.4 23 74-96 28-50 (182)
387 3jvv_A Twitching mobility prot 87.5 0.3 1E-05 52.2 3.5 22 73-94 124-145 (356)
388 2r8r_A Sensor protein; KDPD, P 87.5 1.3 4.5E-05 43.9 7.8 21 73-93 7-27 (228)
389 3io3_A DEHA2D07832P; chaperone 87.4 1.7 6E-05 46.1 9.3 41 165-205 232-273 (348)
390 2bwj_A Adenylate kinase 5; pho 87.3 0.36 1.2E-05 46.3 3.7 26 72-97 12-37 (199)
391 4e22_A Cytidylate kinase; P-lo 87.3 0.4 1.4E-05 48.5 4.1 27 72-98 27-53 (252)
392 1sq5_A Pantothenate kinase; P- 87.3 0.31 1.1E-05 51.0 3.4 26 70-95 78-103 (308)
393 2pt7_A CAG-ALFA; ATPase, prote 87.3 0.22 7.5E-06 52.7 2.2 22 73-94 172-193 (330)
394 1zd8_A GTP:AMP phosphotransfer 87.2 0.38 1.3E-05 47.6 3.9 26 72-97 7-32 (227)
395 1qf9_A UMP/CMP kinase, protein 87.2 0.4 1.4E-05 45.6 3.9 26 72-97 6-31 (194)
396 1rz3_A Hypothetical protein rb 87.2 0.38 1.3E-05 46.7 3.8 24 71-94 21-44 (201)
397 3fkq_A NTRC-like two-domain pr 87.2 2.6 8.9E-05 45.1 10.8 36 138-175 258-293 (373)
398 2plr_A DTMP kinase, probable t 87.1 0.39 1.3E-05 46.5 3.9 25 73-97 5-29 (213)
399 1t95_A Hypothetical protein AF 87.1 0.89 3E-05 45.2 6.3 67 668-735 168-235 (240)
400 1aky_A Adenylate kinase; ATP:A 87.1 0.4 1.4E-05 47.1 3.9 27 72-98 4-30 (220)
401 3tui_C Methionine import ATP-b 87.0 0.29 1E-05 52.4 3.0 23 71-93 53-75 (366)
402 2bbs_A Cystic fibrosis transme 87.0 0.3 1E-05 50.6 3.1 23 71-93 63-85 (290)
403 3fwy_A Light-independent proto 86.9 3.1 0.0001 43.5 10.8 81 138-224 162-247 (314)
404 3fvq_A Fe(3+) IONS import ATP- 86.9 0.32 1.1E-05 52.0 3.2 22 72-93 30-51 (359)
405 3tqc_A Pantothenate kinase; bi 86.9 0.37 1.3E-05 50.7 3.7 25 71-95 91-115 (321)
406 3izy_P Translation initiation 86.8 1.5 5.2E-05 49.4 8.9 75 374-452 449-534 (537)
407 2v54_A DTMP kinase, thymidylat 86.8 0.37 1.3E-05 46.5 3.5 23 73-95 5-27 (204)
408 2iyv_A Shikimate kinase, SK; t 86.8 0.34 1.2E-05 46.0 3.2 25 73-97 3-27 (184)
409 2kdo_A Ribosome maturation pro 86.7 0.23 7.9E-06 49.8 1.9 67 668-735 172-238 (252)
410 1e4v_A Adenylate kinase; trans 86.7 0.43 1.5E-05 46.7 3.9 24 74-97 2-25 (214)
411 2pt5_A Shikimate kinase, SK; a 86.7 0.41 1.4E-05 44.6 3.6 24 74-97 2-25 (168)
412 2pjz_A Hypothetical protein ST 86.6 0.33 1.1E-05 49.6 3.1 22 72-93 30-51 (263)
413 2ewv_A Twitching motility prot 86.6 0.35 1.2E-05 52.1 3.4 24 71-94 135-158 (372)
414 2wwf_A Thymidilate kinase, put 86.6 0.41 1.4E-05 46.5 3.7 24 72-95 10-33 (212)
415 1zak_A Adenylate kinase; ATP:A 86.6 0.41 1.4E-05 47.2 3.6 25 73-97 6-30 (222)
416 3tlx_A Adenylate kinase 2; str 86.5 0.49 1.7E-05 47.5 4.3 29 70-98 27-55 (243)
417 3umf_A Adenylate kinase; rossm 86.5 0.53 1.8E-05 46.5 4.4 30 70-99 27-56 (217)
418 2pbr_A DTMP kinase, thymidylat 86.4 0.37 1.3E-05 45.9 3.2 21 74-94 2-22 (195)
419 1nn5_A Similar to deoxythymidy 86.4 0.42 1.4E-05 46.5 3.6 24 71-94 8-31 (215)
420 1e6c_A Shikimate kinase; phosp 86.4 0.39 1.3E-05 45.0 3.2 25 73-97 3-27 (173)
421 1uj2_A Uridine-cytidine kinase 86.3 0.48 1.6E-05 47.8 4.1 27 71-97 21-47 (252)
422 2oap_1 GSPE-2, type II secreti 86.3 0.29 9.9E-06 55.0 2.6 24 71-94 259-282 (511)
423 3ez2_A Plasmid partition prote 86.3 0.99 3.4E-05 48.8 6.9 90 138-230 243-344 (398)
424 2ze6_A Isopentenyl transferase 86.3 0.46 1.6E-05 48.1 3.9 26 73-98 2-27 (253)
425 1odf_A YGR205W, hypothetical 3 86.2 0.46 1.6E-05 49.3 4.0 25 70-94 29-53 (290)
426 3gd7_A Fusion complex of cysti 86.2 0.48 1.6E-05 51.3 4.2 23 71-93 46-68 (390)
427 2x8a_A Nuclear valosin-contain 86.2 0.45 1.5E-05 48.9 3.8 25 73-97 45-69 (274)
428 1z47_A CYSA, putative ABC-tran 86.1 0.36 1.2E-05 51.6 3.1 21 73-93 42-62 (355)
429 2pez_A Bifunctional 3'-phospho 86.1 0.41 1.4E-05 45.3 3.3 24 72-95 5-28 (179)
430 3nh6_A ATP-binding cassette SU 85.9 0.25 8.5E-06 51.7 1.7 23 71-93 79-101 (306)
431 1gtv_A TMK, thymidylate kinase 85.9 0.23 8E-06 48.4 1.4 22 74-95 2-23 (214)
432 2yyz_A Sugar ABC transporter, 85.9 0.37 1.3E-05 51.6 3.1 22 72-93 29-50 (359)
433 2vli_A Antibiotic resistance p 85.9 0.36 1.2E-05 45.6 2.8 26 72-97 5-30 (183)
434 3nwj_A ATSK2; P loop, shikimat 85.8 0.41 1.4E-05 48.5 3.2 26 72-97 48-73 (250)
435 2cdn_A Adenylate kinase; phosp 85.8 0.52 1.8E-05 45.5 3.9 25 73-97 21-45 (201)
436 1f2t_A RAD50 ABC-ATPase; DNA d 85.7 0.45 1.5E-05 44.0 3.2 22 74-95 25-46 (149)
437 1lw7_A Transcriptional regulat 85.7 0.36 1.2E-05 51.7 2.9 24 72-95 170-193 (365)
438 1vht_A Dephospho-COA kinase; s 85.6 0.49 1.7E-05 46.4 3.6 22 73-94 5-26 (218)
439 2it1_A 362AA long hypothetical 85.5 0.39 1.3E-05 51.4 3.0 23 71-93 28-50 (362)
440 1g29_1 MALK, maltose transport 85.4 0.4 1.4E-05 51.6 3.1 21 73-93 30-50 (372)
441 3rlf_A Maltose/maltodextrin im 85.4 0.4 1.4E-05 51.7 3.0 22 72-93 29-50 (381)
442 2z0h_A DTMP kinase, thymidylat 85.4 0.41 1.4E-05 45.8 2.9 22 74-95 2-23 (197)
443 1ixz_A ATP-dependent metallopr 85.3 0.5 1.7E-05 47.5 3.7 24 73-96 50-73 (254)
444 1v43_A Sugar-binding transport 85.3 0.4 1.4E-05 51.5 3.0 23 71-93 36-58 (372)
445 1p9r_A General secretion pathw 85.1 0.49 1.7E-05 51.7 3.6 24 72-95 167-190 (418)
446 1jbk_A CLPB protein; beta barr 85.1 0.55 1.9E-05 44.1 3.6 25 71-95 42-66 (195)
447 1u94_A RECA protein, recombina 85.0 0.92 3.1E-05 48.4 5.7 25 71-95 62-86 (356)
448 1gvn_B Zeta; postsegregational 84.9 0.55 1.9E-05 48.5 3.8 26 71-96 32-57 (287)
449 1ak2_A Adenylate kinase isoenz 84.7 0.6 2.1E-05 46.4 3.9 27 71-97 15-41 (233)
450 1sxj_A Activator 1 95 kDa subu 84.7 3.7 0.00013 46.1 10.8 27 71-97 76-102 (516)
451 3bh0_A DNAB-like replicative h 84.7 0.64 2.2E-05 48.7 4.2 23 73-95 69-91 (315)
452 3bgw_A DNAB-like replicative h 84.6 0.85 2.9E-05 50.3 5.3 23 73-95 198-220 (444)
453 2f6r_A COA synthase, bifunctio 84.5 0.6 2E-05 48.1 3.8 24 70-93 73-96 (281)
454 2zr9_A Protein RECA, recombina 84.5 0.64 2.2E-05 49.5 4.2 25 71-95 60-84 (349)
455 2vp4_A Deoxynucleoside kinase; 84.5 0.44 1.5E-05 47.3 2.7 26 70-95 18-43 (230)
456 2v1u_A Cell division control p 84.4 2.3 7.8E-05 45.1 8.6 26 70-95 42-67 (387)
457 2b8t_A Thymidine kinase; deoxy 84.3 0.72 2.5E-05 45.8 4.2 42 165-206 89-130 (223)
458 2w0m_A SSO2452; RECA, SSPF, un 84.0 0.62 2.1E-05 45.7 3.6 22 73-94 24-45 (235)
459 1q3t_A Cytidylate kinase; nucl 84.0 0.68 2.3E-05 46.1 3.9 29 69-97 13-41 (236)
460 2xb4_A Adenylate kinase; ATP-b 84.0 0.63 2.2E-05 45.9 3.6 24 74-97 2-25 (223)
461 2p5t_B PEZT; postsegregational 83.9 0.52 1.8E-05 47.6 3.0 27 71-97 31-57 (253)
462 3d31_A Sulfate/molybdate ABC t 83.7 0.35 1.2E-05 51.5 1.7 22 72-93 26-47 (348)
463 3a8t_A Adenylate isopentenyltr 83.7 0.66 2.2E-05 49.0 3.7 25 73-97 41-65 (339)
464 1iy2_A ATP-dependent metallopr 83.7 0.66 2.3E-05 47.4 3.7 24 73-96 74-97 (278)
465 2grj_A Dephospho-COA kinase; T 83.6 0.72 2.5E-05 44.6 3.8 27 71-97 11-37 (192)
466 3be4_A Adenylate kinase; malar 83.4 0.75 2.6E-05 45.1 3.9 25 73-97 6-30 (217)
467 2axn_A 6-phosphofructo-2-kinas 83.4 2.4 8.3E-05 47.6 8.5 23 73-95 36-58 (520)
468 3pfi_A Holliday junction ATP-d 83.3 3 0.0001 43.6 8.8 26 70-95 53-78 (338)
469 3hr8_A Protein RECA; alpha and 83.3 1.3 4.4E-05 47.3 5.8 24 72-95 61-84 (356)
470 1m7g_A Adenylylsulfate kinase; 83.2 0.65 2.2E-05 45.3 3.3 24 71-94 24-47 (211)
471 1in4_A RUVB, holliday junction 83.1 0.67 2.3E-05 48.9 3.6 27 71-97 50-76 (334)
472 3qf7_A RAD50; ABC-ATPase, ATPa 83.0 0.6 2.1E-05 50.1 3.2 22 74-95 25-46 (365)
473 1hqc_A RUVB; extended AAA-ATPa 82.8 4 0.00014 42.2 9.5 25 71-95 37-61 (324)
474 2npi_A Protein CLP1; CLP1-PCF1 82.8 0.64 2.2E-05 51.5 3.4 24 71-94 137-160 (460)
475 1cr0_A DNA primase/helicase; R 82.5 0.72 2.5E-05 47.6 3.5 22 73-94 36-57 (296)
476 1oxx_K GLCV, glucose, ABC tran 82.4 0.35 1.2E-05 51.6 1.0 22 72-93 31-52 (353)
477 1q57_A DNA primase/helicase; d 82.4 0.95 3.2E-05 50.7 4.7 24 73-96 243-266 (503)
478 2w58_A DNAI, primosome compone 82.4 0.81 2.8E-05 44.1 3.6 23 73-95 55-77 (202)
479 3co5_A Putative two-component 82.2 2.1 7.2E-05 38.8 6.2 22 71-92 26-47 (143)
480 1lv7_A FTSH; alpha/beta domain 82.2 0.8 2.7E-05 46.1 3.6 26 72-97 45-70 (257)
481 3r20_A Cytidylate kinase; stru 82.1 0.83 2.8E-05 45.6 3.6 26 73-98 10-35 (233)
482 3cmu_A Protein RECA, recombina 82.1 3.1 0.00011 53.8 9.6 27 70-96 1425-1451(2050)
483 3io5_A Recombination and repai 81.8 7.7 0.00026 40.5 10.8 21 75-95 31-51 (333)
484 3ake_A Cytidylate kinase; CMP 81.7 0.88 3E-05 43.9 3.6 24 74-97 4-27 (208)
485 2p65_A Hypothetical protein PF 81.7 0.73 2.5E-05 43.2 2.9 25 71-95 42-66 (187)
486 4eaq_A DTMP kinase, thymidylat 81.5 0.92 3.2E-05 45.1 3.7 27 70-96 24-50 (229)
487 2obl_A ESCN; ATPase, hydrolase 81.4 0.85 2.9E-05 48.5 3.6 25 72-96 71-95 (347)
488 3euj_A Chromosome partition pr 81.4 0.74 2.5E-05 51.2 3.2 22 73-94 30-51 (483)
489 3bos_A Putative DNA replicatio 81.4 0.88 3E-05 44.7 3.5 25 71-95 51-75 (242)
490 1svm_A Large T antigen; AAA+ f 81.2 0.87 3E-05 49.0 3.6 26 70-95 167-192 (377)
491 1xp8_A RECA protein, recombina 80.9 1.4 4.7E-05 47.2 5.0 24 72-95 74-97 (366)
492 1n0w_A DNA repair protein RAD5 80.3 0.91 3.1E-05 44.9 3.2 24 72-95 24-47 (243)
493 3pvs_A Replication-associated 80.1 6 0.00021 43.4 10.0 27 70-96 48-74 (447)
494 2orw_A Thymidine kinase; TMTK, 79.7 6.9 0.00024 37.2 9.2 40 165-204 76-115 (184)
495 3pg5_A Uncharacterized protein 79.6 1.5 5.1E-05 46.8 4.8 35 139-175 153-187 (361)
496 1ltq_A Polynucleotide kinase; 79.6 0.97 3.3E-05 46.6 3.3 22 73-94 3-24 (301)
497 2ga8_A Hypothetical 39.9 kDa p 79.2 1.3 4.5E-05 47.0 4.1 26 70-95 22-47 (359)
498 2dpy_A FLII, flagellum-specifi 79.1 1.1 3.8E-05 49.3 3.6 25 72-96 157-181 (438)
499 3qks_A DNA double-strand break 79.0 1.1 3.7E-05 43.6 3.2 23 74-96 25-47 (203)
500 2bjv_A PSP operon transcriptio 78.9 5.2 0.00018 40.1 8.5 25 72-96 29-53 (265)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.9e-138 Score=1231.79 Aligned_cols=683 Identities=43% Similarity=0.742 Sum_probs=624.1
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-------Cee
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------DYQ 141 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------~~~ 141 (762)
.++||||||+||+|||||||+++||+.+|.+++.++++++ .+++|++++|++|||||+++..++.|+ ++.
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~---~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~ 86 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG---AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYR 86 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCCEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC---CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence 4789999999999999999999999999999999999988 889999999999999999999999996 589
Q ss_pred EEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhc
Q 004311 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLR 221 (762)
Q Consensus 142 i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~ 221 (762)
|||||||||.||..++.++|+.+|+||+||||.+|++.||+.+|++|.++++|+++||||||+.++++...+++++..++
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecCCCcCcccceeecccceeEEeeCC-CCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCC
Q 004311 222 HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGS-NGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI 300 (762)
Q Consensus 222 ~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 300 (762)
..+.++++|++.++.|.|++|++++++++|... .|..+...++|.++.+....++..++|.+++.|++++++|+++.++
T Consensus 167 ~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~ 246 (709)
T 4fn5_A 167 HTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246 (709)
T ss_dssp SCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCC
T ss_pred cceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCc
Confidence 999999999999999999999999999999754 4778888999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccc-cccCccceeeccCCCCCCeEEEEEE
Q 004311 301 SSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAFK 379 (762)
Q Consensus 301 ~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~k 379 (762)
+.+++...+++....+.++|++|+||+++.|++.|||+|++++|+|.+.+..+. ..+++.......|++++||+++|||
T Consensus 247 ~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK 326 (709)
T 4fn5_A 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFK 326 (709)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEE
T ss_pred cHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEE
Confidence 999999999999999999999999999999999999999999999998776542 2233334456679999999999999
Q ss_pred EeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCc
Q 004311 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVK 457 (762)
Q Consensus 380 ~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~ 457 (762)
+.+|++ |+++|+|||||+|++||+|+|...++++++++++.++|++++++++|.|||||+|.|+ ++.+||||++...+
T Consensus 327 ~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 327 IATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKP 406 (709)
T ss_dssp CCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSC
T ss_pred eecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCcc
Confidence 999998 9999999999999999999999999999999999999999999999999999999999 89999999999888
Q ss_pred cccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEE
Q 004311 458 YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATV 537 (762)
Q Consensus 458 ~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~ 537 (762)
..++++.+|+|+++++|+|.+++|++||.++|++|+++||+++++.+++|||++|+||||||||||++||+++||+++.+
T Consensus 407 ~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~v 486 (709)
T 4fn5_A 407 IILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANI 486 (709)
T ss_dssp CBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCC
T ss_pred ccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceeeEEeeeccc-cceeeeecccCCCCCceEEEEEEEEeCCCC----CCCCceeeecccCCCCCcchHHHHHHHHHHH
Q 004311 538 GKPRVNFREAVTKR-AEFDYLHKKQSGGQGQYGRVIGYIEPLPLG----SPAKFEFENLLVGQAIPSNFIPAIEKGFKEA 612 (762)
Q Consensus 538 ~~p~V~yrEti~~~-~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a 612 (762)
++|.|+|||||++. ++.++++++|++|++||+.++++++|.+.. .+.++.|.+++.++.+|++|+++|++||+||
T Consensus 487 s~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a 566 (709)
T 4fn5_A 487 GKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQ 566 (709)
T ss_dssp BCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHH
T ss_pred eeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHHHHHHHH
Confidence 99999999999874 567899999999999999999999998532 2357899999999999999999999999999
Q ss_pred HhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCC
Q 004311 613 ANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 692 (762)
Q Consensus 613 ~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 692 (762)
+++||||||||+||+|+|.|+++|+++|++++|+.|+++||+ +|+++|+|+||||||.|+|+||++|+|+||++|++||
T Consensus 567 ~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~-~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RR 645 (709)
T 4fn5_A 567 MKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATK-QLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRR 645 (709)
T ss_dssp HHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHH-THHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGT
T ss_pred HhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHH-HHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHh
Q 004311 693 GMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 755 (762)
Q Consensus 693 g~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~ 755 (762)
|+|.+++..++..+|+|++|++|||||+++||++|+|+|+|+|+|+||++||++++++++++.
T Consensus 646 G~i~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~ 708 (709)
T 4fn5_A 646 GLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 708 (709)
T ss_dssp CEEEEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHTC
T ss_pred CEEeceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHhc
Confidence 999999998888999999999999999999999999999999999999999999999999763
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.5e-135 Score=1199.26 Aligned_cols=683 Identities=46% Similarity=0.768 Sum_probs=649.6
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-------e
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-------Y 140 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------~ 140 (762)
+.+++|||+|+||+|||||||+++|++.++.+.+.+.++++ .+++|+++.|+++|+|+......+.|++ +
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 82 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPH 82 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC---ceeecChhhHHhcCceeeeceEEEEECCccccCCce
Confidence 35689999999999999999999999999988887778777 7899999999999999999999999988 9
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHh
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKL 220 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l 220 (762)
.++|||||||.+|..++.++++.+|++|+|+|+++|++.||..+|+++...++|+++|+||+|+..+++.++++++++.+
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeecCCCcCcccceeecccceeEEeeC-CCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCC
Q 004311 221 RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEP 299 (762)
Q Consensus 221 ~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~ 299 (762)
+..+.++++|++.+..|.|++|++.+++++|++ ..|..+...++|+++.+++.++|++|+|.+++.||++|++||++.+
T Consensus 163 ~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~ 242 (704)
T 2rdo_7 163 GANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242 (704)
T ss_pred CCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCC
Confidence 999999999999999999999999999999976 4477788889999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccc-cccCccceeeccCCCCCCeEEEEE
Q 004311 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAF 378 (762)
Q Consensus 300 ~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~ 378 (762)
++.+++...+++.+..+.|+|++|+||++|.|++.|||+|++++|+|.+++..+. +...+.....+.|++++||+++||
T Consensus 243 l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vf 322 (704)
T 2rdo_7 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAF 322 (704)
T ss_pred CCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999987654422 111111124566889999999999
Q ss_pred EEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCC
Q 004311 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSV 456 (762)
Q Consensus 379 k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~ 456 (762)
|++.|++ |+++|+|||||+|++||+|++.+.+++++|++|+.++|++++++++|.|||||+|.|+ ++.+||||++...
T Consensus 323 K~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 323 KIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDA 402 (704)
T ss_pred EEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCc
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999 8999999999888
Q ss_pred ccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEE
Q 004311 457 KYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDAT 536 (762)
Q Consensus 457 ~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~ 536 (762)
+..++++.+++|+++++|+|.++.|++||.++|++|.+|||++++..|+||||++|+|||||||||+++||+++||+++.
T Consensus 403 ~~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~ 482 (704)
T 2rdo_7 403 PIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEAN 482 (704)
T ss_pred ccccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceeeEEeeecccc-ceeeeecccCCCCCceEEEEEEEEeC---CCCCCCCceeeecccCCCCCcchHHHHHHHHHHH
Q 004311 537 VGKPRVNFREAVTKRA-EFDYLHKKQSGGQGQYGRVIGYIEPL---PLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEA 612 (762)
Q Consensus 537 ~~~p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~i~P~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a 612 (762)
+++|+|+|||||.+++ +..++|++|+||++||++|+++++|+ +++ .++.|.+.+.|+.+|++|+++|++||+||
T Consensus 483 ~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g--~g~~f~~~~~g~~~p~~~~~~v~~g~~~a 560 (704)
T 2rdo_7 483 VGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNP--KGYEFINDIKGGVIPGEYIPAVDKGIQEQ 560 (704)
T ss_pred EeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCC--CCcEEEEeccCCcCcHHHHHHHHHHHHHH
Confidence 9999999999999998 89999999999999999999999999 665 48999999999999999999999999999
Q ss_pred HhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCC
Q 004311 613 ANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 692 (762)
Q Consensus 613 ~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 692 (762)
+++||||||||+||+|+|+|+.+|++||++++|+.|+++||+ +|+++|+|+||||||.++|.||++|+|+||++|++||
T Consensus 561 ~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~-~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rr 639 (704)
T 2rdo_7 561 LKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFK-EGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRR 639 (704)
T ss_pred HhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHH-HHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004311 693 GMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 756 (762)
Q Consensus 693 g~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~ 756 (762)
|+|++++..++.+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++++
T Consensus 640 G~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 703 (704)
T 2rdo_7 640 GMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARG 703 (704)
T ss_pred ceEeCceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHHhc
Confidence 9999999988899999999999999999999999999999999999999999999999998754
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-133 Score=1183.05 Aligned_cols=683 Identities=45% Similarity=0.761 Sum_probs=624.4
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
+.+++|||+|+||+|||||||+++|++.++.+.+.+.++++ .+++|+.+.|+++|+|+.+....+.|+++.++||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~---~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 82 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG---ASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDT 82 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC----------------------------CCSEEEEEETTEEEEEECC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---ceecccchhhhhcCceEeeeeEEEEECCeeEEEEEC
Confidence 35679999999999999999999999998888777777776 778999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||.+|..++.++++.+|++|+|+|+.++++.++..+|+++...++|+++|+||+|+..+++.+.++++++.++..+.+.
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~ 162 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPI 162 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEES
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
++|++.+..|.|++|++.++.++|++..|..+...++|.++.+.+..+|+++++.+++.||++|++||++.+++.+++..
T Consensus 163 ~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 163 QLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred EeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999972236667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCccccccccc-ccCccceeeccCCCCCCeEEEEEEEeecCC-
Q 004311 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD-QKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (762)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~- 385 (762)
.+++.+..+.++||+|+||++|.|++.||++|++++|+|.+++.++.. ...........|++++||+++|||++.|++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCC
Confidence 999999999999999999999999999999999999999886544221 111013345678999999999999999998
Q ss_pred ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccccCC
Q 004311 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (762)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (762)
|+++|+|||||+|++||+|+|...+++++|++|+.++|++++++++|.|||||+|.|+ ++.+||||++...+..++++.
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred ceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999988888899999
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeE
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (762)
+|+|+++++|+|++++|++||.++|++|.+|||+|++.+|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004311 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (762)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 624 (762)
||||.++++..++|++|+||++||++|+++++|++++. ++.|.+++.|+.+|++|+++|++||+||+++||||||||+
T Consensus 483 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~--g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~ 560 (693)
T 2xex_A 483 RETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGA--GFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLI 560 (693)
T ss_dssp EEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTC--CCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBC
T ss_pred EEEeccccceeEeeccccCCCCceEEEEEEEEECCCCC--CCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCcee
Confidence 99999999999999999999999999999999999764 8999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCe
Q 004311 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 704 (762)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 704 (762)
||+|+|.|+++|++||++++|+.|+++||+ +|+++|+|+||||||.++|.||++|+|+||++|++|||+|++++..++.
T Consensus 561 ~v~v~l~dg~~h~vds~~~~f~~a~~~a~~-~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~ 639 (693)
T 2xex_A 561 DVKAKLYDGSYHDVDSSEMAFKIAASLALK-EAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNA 639 (693)
T ss_dssp SEEEEEEEEECCTTTCCHHHHHHHHHHHHH-HHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred eEEEEEEeccccCCCCCHHHHHHHHHHHHH-HHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCe
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999998889
Q ss_pred EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004311 705 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 756 (762)
Q Consensus 705 ~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~ 756 (762)
+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++++
T Consensus 640 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 691 (693)
T 2xex_A 640 QVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691 (693)
T ss_dssp EEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred EEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998864
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.4e-133 Score=1183.35 Aligned_cols=679 Identities=48% Similarity=0.819 Sum_probs=577.9
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+++|||+|+||+|||||||+++|++.++.+.+.+.++++ .+++|+++.|+++|+|+......+.|+++.++|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~---~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------CCEEEEEETTEEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCC---ceeccCchhhhhcccccccceEEEEECCeEEEEEECc
Confidence 4678999999999999999999999999988877777777 7889999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (762)
||.+|..++.++++.+|++|+|+|+.+++..|+..+|.++...++|+++|+||+|+..+++.+.++++++.++..+.+.+
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQ 165 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECE
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004311 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (762)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (762)
+|++.+..|.|++|++.+++++|++..|..+...++|+++.+++.++|++|++.+++.||++|++||++.+++.+++...
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999999999733466778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-cc
Q 004311 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (762)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~ 387 (762)
+++.+..+.++|++|+||++|.|++.||++|++++|+|.+++.++.... ......+.|++++||+++|||++.|++ |+
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~ 324 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP-EGEVVEIHPDPNGPLAALAFKIMADPYVGR 324 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS-SSCEEEECCCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC-CccccccccCCCCCcEEEEEEEEEcCCCCc
Confidence 9999999999999999999999999999999999999998755432111 122346678899999999999999998 99
Q ss_pred EEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCc-cccccCCC
Q 004311 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVK-YTMTSMHV 465 (762)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~-~~l~~~~~ 465 (762)
++|+|||||+|++||+|+|.+.+++++|++|+.++|++++++++|.|||||+|.|+ ++.+||||++...+ ..++++.+
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~~ 404 (691)
T 1dar_A 325 LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEV 404 (691)
T ss_dssp EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC----
T ss_pred EEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 89999999998877 88999999
Q ss_pred CcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeEE
Q 004311 466 PEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFR 545 (762)
Q Consensus 466 ~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yr 545 (762)
+.|+++++|+|+++.|++||.++|++|.+|||++++..|+||||++|+|||||||||+++||+++||+++.+++|+|+||
T Consensus 405 ~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yr 484 (691)
T 1dar_A 405 PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484 (691)
T ss_dssp ----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCCE
T ss_pred CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeE
Q 004311 546 EAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEY 625 (762)
Q Consensus 546 Eti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 625 (762)
|||.++++..++|++|+||++||++|+++++|++++. ++.|.+++.|+.+|++|+++|++||+||+++||||||||+|
T Consensus 485 Eti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~--g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~ 562 (691)
T 1dar_A 485 ETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562 (691)
T ss_dssp EECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTC--CEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCS
T ss_pred EeeccceeeeeeeccccCCCCceEEEEEEEEECCCCC--CCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceee
Confidence 9999999999999999999999999999999999764 89999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeE
Q 004311 626 LRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 705 (762)
Q Consensus 626 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 705 (762)
|+|+|.|+++|++||++++|+.|+++||+ +|+++|+|+||||||.++|.||++|+|+||++|++|||+|++++..++.+
T Consensus 563 v~v~l~dg~~h~vds~~~~f~~a~~~a~~-~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~ 641 (691)
T 1dar_A 563 IKVTLYDGSYHEVDSSEMAFKIAGSMAIK-EAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQ 641 (691)
T ss_dssp EEEEEEEECCCTTTBCHHHHHHHHHHHHH-HHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEE
T ss_pred EEEEEEeeeccccCcchHHHHHHHHHHHH-HHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeE
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999988899
Q ss_pred EEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHH
Q 004311 706 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKT 754 (762)
Q Consensus 706 ~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~ 754 (762)
.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++
T Consensus 642 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 642 VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC-
T ss_pred EEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999853
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5e-125 Score=1107.24 Aligned_cols=654 Identities=32% Similarity=0.541 Sum_probs=627.7
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.++.+||+|+||+|||||||+++|++..+.+...+.+.++ .+++|+.+.|+++|+|+......+.|+++.++|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC---cccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 4678999999999999999999999988877666666555 6789999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (762)
||.+|..++.++++.+|++++|+|+.+|+..|+..+|+++...++|+++|+||+|+. .+..+.++++.+.++ .+.+.+
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~ 160 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPID 160 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECE
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEE
Confidence 999999999999999999999999999999999999999999999999999999999 888999999999999 888899
Q ss_pred ecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004311 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (762)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (762)
+|++.+..|.|++|++.++.|+|++ |. +...++|+++.+++.++|+++++.+++.||+++++|+++.+++.+++...
T Consensus 161 ~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~ 237 (665)
T 2dy1_A 161 LPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKA 237 (665)
T ss_dssp EEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred eeecCCCcccchhhhhhhheeecCC--Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999986 44 77788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-cc
Q 004311 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (762)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~ 387 (762)
+++.+..+.++|++++||++|.||+.||++|++++|+|.+. .+++||+++|||++.|++ |+
T Consensus 238 ~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------~~~~p~~~~V~k~~~d~~~G~ 299 (665)
T 2dy1_A 238 FHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER------------------FGDGPPLAKVFKVQVDPFMGQ 299 (665)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH------------------HCSCSCEEEEEEEEEETTTEE
T ss_pred HHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc------------------CCCCCeEEEEEEEEEcCCCCe
Confidence 99999999999999999999999999999999999999732 157899999999999998 99
Q ss_pred EEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCc--cccccCC
Q 004311 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVK--YTMTSMH 464 (762)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~--~~l~~~~ 464 (762)
++|+|||||+|++||+|++.+ +.++|++|+.++|++++++++|.|||||+|.|+ ++.+||||++...+ ..++++.
T Consensus 300 ~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~ 377 (665)
T 2dy1_A 300 VAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFAR 377 (665)
T ss_dssp EEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCC
T ss_pred EEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCC
Confidence 999999999999999999887 778999999999999999999999999999999 89999999998777 7889999
Q ss_pred CCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeE
Q 004311 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (762)
Q Consensus 465 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (762)
++.|+++++|+|.+++|.+||.++|++|.+|||++++..|++|||++|+|||||||||+++||+ +||+++.+++|+|+|
T Consensus 378 ~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~y 456 (665)
T 2dy1_A 378 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPY 456 (665)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCC
T ss_pred CCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004311 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (762)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 624 (762)
||||.++++..++|++|+||++||++|+++++|++ ++.|.+++.++.+|++|+++|++||+||+++||||||||+
T Consensus 457 rEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~ 531 (665)
T 2dy1_A 457 RETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVM 531 (665)
T ss_dssp EEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBC
T ss_pred EEeeccceeeeeecccccCCCcceEEEEEEEEECC-----CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCcee
Confidence 99999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCe
Q 004311 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 704 (762)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 704 (762)
||+|+|.|+++|++||++++|+.|+++||+ +|+++|+|+||||||.++|.||++|+|+||++|++|||+|++++..++.
T Consensus 532 ~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~-~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~ 610 (665)
T 2dy1_A 532 GFKAIVYNGSYHEVDSSDLAFQIAASLAFK-KVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGAL 610 (665)
T ss_dssp SEEEEEEEEECCTTTBCHHHHHHHHHHHHH-HHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred eEEEEEEeeeccCCCCCHHHHHHHHHHHHH-HHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCe
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999998899
Q ss_pred EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhhc
Q 004311 705 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNA 757 (762)
Q Consensus 705 ~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~i~~~~~~ 757 (762)
+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|++++++
T Consensus 611 ~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~~ 663 (665)
T 2dy1_A 611 SVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQ 663 (665)
T ss_dssp EEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998754
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=9.8e-129 Score=1133.68 Aligned_cols=615 Identities=27% Similarity=0.421 Sum_probs=576.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+||||||+||+|||||||+++||+.+|.+++.+.++++ ++++|++++|++|||||+++..++.|++++|||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g---~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 77 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG---TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH 77 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS---CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC---CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc
Confidence 58999999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeec
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 230 (762)
.||..++.++++.+|+||+||||.+|++.||+.+|++|.++++|+|+|+||||+.++++...++++++.|+..+...+.
T Consensus 78 ~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~- 156 (638)
T 3j25_A 78 MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK- 156 (638)
T ss_dssp SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877653321
Q ss_pred CCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004311 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (762)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (762)
+++...... . ... ..++.+.+++.||+++++|+++..++..++...++
T Consensus 157 ----------~~~~~~~~~-------~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~ 204 (638)
T 3j25_A 157 ----------VELYPNVCV-------T-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEES 204 (638)
T ss_dssp ----------CCSCGGGCC-------C-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHH
T ss_pred ----------eEeeccccc-------c-----ccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHh
Confidence 111110000 0 000 13456888899999999999999999999999999
Q ss_pred HHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEE
Q 004311 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (762)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~ 389 (762)
..+....++|++|+||++|.||+.|||+|++++|+|.+ +.++||+++|||+.+|++ |+++
T Consensus 205 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~-------------------~~~~~~~~~Vfk~~~d~~~G~la 265 (638)
T 3j25_A 205 IRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTH-------------------RGPSELCGNVFKIEYTKKRQRLA 265 (638)
T ss_dssp HHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGG-------------------GSCCCCCBEEBCCCCCSTTCCCC
T ss_pred hhhcccccccccccccccCCCchhHhhhhhccccCccc-------------------chhhhhcceeeeeeeeccCceEE
Confidence 99999999999999999999999999999999999973 356899999999999998 9999
Q ss_pred EEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEcccccccCceeecCCCccccccCCCCcce
Q 004311 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMHVPEPV 469 (762)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~GdtL~~~~~~~~l~~~~~~~Pv 469 (762)
|+|||||+|++||+|++.+.+ ++++.+++.++|.+++++++|.|||||++.|.++++|+|+++......++.+.+|+|+
T Consensus 266 ~~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 266 YIRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp BCCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSSSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEeccccccCceecCCCCcccccCccCCCcc
Confidence 999999999999999887654 5799999999999999999999999999998788899999998888888889999999
Q ss_pred eeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeEEeeec
Q 004311 470 MSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVT 549 (762)
Q Consensus 470 ~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~ 549 (762)
++++|+|.++.|++||.++|++|++|||++++..|++|||++|+|||||||||+++||+++||+++.+++|+|+|||||.
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEE
Q 004311 550 KRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVV 629 (762)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~ 629 (762)
++++ +++++|+++++||++|++.++|++++. ++.|.+.+.++.+|++|+++|++||+|++++| |+||||+||+|+
T Consensus 425 ~~~~--~~~~~~~~~~~~~~~v~~~~eP~~~~~--g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~ 499 (638)
T 3j25_A 425 KNAE--YTIHIEVPPNPFWASIGLSVSPLPLGS--GMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKIC 499 (638)
T ss_dssp SCCE--ECCCCCSSSCCCCCCCCEECCCCCSSC--CCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCC
T ss_pred ccce--EEEEEecCCCCceEEEEEEEecccCCC--CcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEE
Confidence 8764 678899999999999999999999764 89999999999999999999999999999999 999999999999
Q ss_pred EEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEE
Q 004311 630 LTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITA 709 (762)
Q Consensus 630 l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a 709 (762)
|.|+.+|+++|++++|+.|+++||+ +|+++|+|+||||||.|+|+||++|+|+||++|++|||+|++++..++.++|+|
T Consensus 500 l~dg~~h~~~s~~~~f~~a~~~a~~-~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a 578 (638)
T 3j25_A 500 FKYGLYYSPVSTPADFRMLAPIVLE-QVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSG 578 (638)
T ss_dssp CCCCCCSSCSCCSHHHHHHHHHHHH-HHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEEC
T ss_pred EEECcccCCCCCHHHHHHHHHHHHH-HHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEE
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhH
Q 004311 710 HVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDV 747 (762)
Q Consensus 710 ~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 747 (762)
++|++|||||+++|||+|+|+|+|+|+|+||+++|+|+
T Consensus 579 ~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp 616 (638)
T 3j25_A 579 EIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEP 616 (638)
T ss_dssp CCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCC
T ss_pred EECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCc
Confidence 99999999999999999999999999999999999875
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=5.6e-118 Score=1070.35 Aligned_cols=670 Identities=25% Similarity=0.369 Sum_probs=567.4
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---------
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------- 138 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 138 (762)
..+++|||+|+||+|||||||+++|++.++.+...+ .++ .+++|+.+.|+++|+|+.+....+.|+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~---~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i 89 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGE---ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEI 89 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCC---ceeecCchhhhhcceeEeeceeEEEecccccccccc
Confidence 346799999999999999999999999988876543 233 578999999999999999999888886
Q ss_pred -------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC----
Q 004311 139 -------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA---- 207 (762)
Q Consensus 139 -------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~---- 207 (762)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|+..+|+++...++|+++|+||+|+...
T Consensus 90 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~ 169 (842)
T 1n0u_A 90 KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQV 169 (842)
T ss_dssp SSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCC
T ss_pred cccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred -------ChhHHHHHHHHHhc-----------cceeeeeecCCCc----------------CcccceeecccceeE---E
Q 004311 208 -------DPWKVLDQARSKLR-----------HHCAAVQVPMGLE----------------DQFQGLVDLVQLTAY---Y 250 (762)
Q Consensus 208 -------~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~g~idl~~~~~~---~ 250 (762)
++.+.+++++..++ ..+.+.++|++.+ .+|.+.++.+..+.| |
T Consensus 170 ~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~ 249 (842)
T 1n0u_A 170 SKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSF 249 (842)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhcccc
Confidence 23456677766653 3445557777654 334444455555555 7
Q ss_pred eeCCCCCeEEecCCC-------hhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC--CCCChhHHH---HHHHHHHhcCcc
Q 004311 251 FHGSNGEKIVTGEVP-------ADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLE---EAIRRATVARKF 318 (762)
Q Consensus 251 ~~~~~g~~~~~~~i~-------~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~---~~l~~~~~~~~~ 318 (762)
|++. ++.+...++| +.|.+++++++.+|++.+++.||++|++||++ .+++.+++. +.|++.+ ++.|
T Consensus 250 ~~~~-~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~ 327 (842)
T 1n0u_A 250 FNPK-TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKF 327 (842)
T ss_dssp EETT-TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHH
T ss_pred ccCC-CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhc
Confidence 7653 5666655544 46888999999999999999999999999986 578888888 8888888 7799
Q ss_pred eeeecccccCCCchHHHHHHHHhcCCCCccccccccc------ccCccceeeccCCCCCCeEEEEEEEeecCC-cc-EEE
Q 004311 319 IPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTY 390 (762)
Q Consensus 319 ~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~-l~~ 390 (762)
+|+ ++.|||+|++++|+|.+++.++.. .+.........|++++||+|+|||+..+++ |+ ++|
T Consensus 328 ~pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~ 397 (842)
T 1n0u_A 328 LPA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAF 397 (842)
T ss_dssp SBH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEE
T ss_pred cch----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEE
Confidence 998 589999999999999976544321 011112234568999999999999999998 96 999
Q ss_pred EEEEeeeecCCCeEEe------cCCCe---EEEcCeEEEeecCcccccccccCCCEEEEccc-ccccC-ceeecCCCccc
Q 004311 391 LRIYEGVIRKGDFIIN------VNTGK---KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASG-DTFTDGSVKYT 459 (762)
Q Consensus 391 ~RV~sG~l~~g~~v~~------~~~~~---~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G-dtL~~~~~~~~ 459 (762)
+|||||+|++||+|++ .+.++ .++|++|+.++|+++++|++|.|||||+|.|+ ++.+| +|||+...+..
T Consensus 398 ~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~ 477 (842)
T 1n0u_A 398 GRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHN 477 (842)
T ss_dssp EEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCC
T ss_pred EEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccc
Confidence 9999999999999954 34444 68999999999999999999999999999999 67554 59999888888
Q ss_pred cccCCCC-cceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-CceEEE
Q 004311 460 MTSMHVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATV 537 (762)
Q Consensus 460 l~~~~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~ 537 (762)
++++.+| +|+++++|+|+++.|++||.++|++|.+|||+|++..| ||||++|+||||||||||++||+++| |+++.+
T Consensus 478 l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~ 556 (842)
T 1n0u_A 478 MKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKI 556 (842)
T ss_dssp BCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEE
T ss_pred cccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEe
Confidence 8999888 69999999999999999999999999999999999998 89999999999999999999999999 999999
Q ss_pred eCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCC------------------------------------
Q 004311 538 GKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------ 581 (762)
Q Consensus 538 ~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------ 581 (762)
++|+|+|||||+++++..+..+. ++.|.+++++++|++++
T Consensus 557 ~~P~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~ 632 (842)
T 1n0u_A 557 SPPVVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARK 632 (842)
T ss_dssp ECCCCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHT
T ss_pred cCcEEEEEEeeccccccceeecc----CCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhc
Confidence 99999999999988876444332 34456899999998731
Q ss_pred -------CCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccccCCCc--HHHHHHHHHHH
Q 004311 582 -------SPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSS--ELAFKMAAIYA 652 (762)
Q Consensus 582 -------~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a 652 (762)
.+++|+|.|.+.|+.++++|+++|++||+||+++||||||||+||+|+|+|+++|...+. .++|+.|+++|
T Consensus 633 iw~~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a 712 (842)
T 1n0u_A 633 IWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRA 712 (842)
T ss_dssp EEEESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHH
T ss_pred eeeeccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHH
Confidence 124799999999999999999999999999999999999999999999999999964333 67899999999
Q ss_pred HHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccccCC--CeEEEEEEechhhhhchHHHHhhhcCCe
Q 004311 653 FRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGK 730 (762)
Q Consensus 653 ~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~Lrs~T~G~ 730 (762)
|+ +|+++|+|+||||||.|+|+||++++|+||+||++|||+|+++++.+ +.++|+|++|++|||||+++|||+|+|+
T Consensus 713 ~~-~a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~ 791 (842)
T 1n0u_A 713 TY-AGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQ 791 (842)
T ss_dssp HH-HHHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTC
T ss_pred HH-HHHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCC
Confidence 99 99999999999999999999999999999999999999999998864 5799999999999999999999999999
Q ss_pred EEEEEEeCceecCChh------HHHHHHHHhhcccC
Q 004311 731 GEFTMEYKEHAPVSQD------VQLQLVKTHNAGRG 760 (762)
Q Consensus 731 a~~~~~f~~y~~v~~~------~~~~i~~~~~~~~~ 760 (762)
|+|+|+|+||++||++ .+++++.+.|++++
T Consensus 792 g~~~~~F~~y~~vp~~~~~~~~~a~~~~~~~R~rKG 827 (842)
T 1n0u_A 792 AFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHG 827 (842)
T ss_dssp CEEEEEEEEEEECCSCTTCTTSHHHHHHHHHHHHTT
T ss_pred ceEEEEeccceeCCCCccchhhHHHHHHHHHHHhCC
Confidence 9999999999999988 89999999988774
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=9.3e-93 Score=813.46 Aligned_cols=491 Identities=25% Similarity=0.408 Sum_probs=401.4
Q ss_pred CCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC-ccccccCChhhhhhhcceeecceEEEeecC
Q 004311 61 KEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 61 ~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
|....+....++|||||+||+|||||||+++||+.+|.+.+.|.|+++. ...+++|++++|++|||||.++..++.|++
T Consensus 20 ~~~~~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~ 99 (548)
T 3vqt_A 20 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD 99 (548)
T ss_dssp CCCHHHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT
T ss_pred hhhhhhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC
Confidence 3333345677999999999999999999999999999999999998764 235799999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHH
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSK 219 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~ 219 (762)
+.|||||||||.||..++.++|+.+|+||+||||.+|++.||+.+|++|.++++|+++||||||+.++++.+.++++++.
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQH 179 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhH-HHHHHHHHHHHHHHhcCCHHHHHHHhc-C
Q 004311 220 LRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADME-TFVAEKRRELIELVSEVDDKLGDMFLS-D 297 (762)
Q Consensus 220 l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~-~~~~~~~~~l~e~~~~~dd~l~e~~l~-~ 297 (762)
|+..+.++++||+.+..|.|++|++.+++++|++..+............. +.+.+......+.. +..++.+.+ .
T Consensus 180 l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 255 (548)
T 3vqt_A 180 LQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL----RMDLALLEEAG 255 (548)
T ss_dssp HTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHH----HHHHHHHHHHC
T ss_pred cCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHh----hhHHHHHhhcc
Confidence 99999999999999999999999999999999876655443222211111 11111111111111 011111111 1
Q ss_pred CCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEE
Q 004311 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALA 377 (762)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 377 (762)
.+... +.+..+.++||+||||++|.||+.|||+|++++|+|.+...... ...+.++||+++|
T Consensus 256 ~~~~~--------e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~----------~~~~~~~p~~a~v 317 (548)
T 3vqt_A 256 TPFDE--------ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR----------VVEPGEEAFTGVV 317 (548)
T ss_dssp CCCCH--------HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSS----------EECTTCSSCEEEE
T ss_pred CchhH--------HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccccc----------ccCCCCcCceEEE
Confidence 12222 24556889999999999999999999999999999986432210 1134578999999
Q ss_pred EEEeec---CC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceee
Q 004311 378 FKLEEG---RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFT 452 (762)
Q Consensus 378 ~k~~~d---~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~ 452 (762)
||+..+ ++ |+++|+|||||+|++||+|+|.+.+++++|.+++.++|.+++++++|.|||||+|.|+ ++.+|||||
T Consensus 318 fKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~ 397 (548)
T 3vqt_A 318 FKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFT 397 (548)
T ss_dssp EEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEE
T ss_pred EEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEec
Confidence 999887 66 9999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred cCCCccccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcC
Q 004311 453 DGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYK 532 (762)
Q Consensus 453 ~~~~~~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~ 532 (762)
+.+.+..++++.++.|+++++|+|+++.|.++|.++|++|.++||+ ++..+++|||++|+|||||||||+++||+++||
T Consensus 398 ~~~~~~~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~-~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~ 476 (548)
T 3vqt_A 398 ESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAV-QLFRPLVNNDYILGAVGVLQFDVIVARLADEYG 476 (548)
T ss_dssp SSSSCCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSS-EEEEESSSCCCEEEESSTHHHHHHHHHHHHHHC
T ss_pred CCCCccccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCce-eEEEECCCCcEEEEEECHHHHHHHHHHHHHHhC
Confidence 9988888999999999999999999999999999999999999985 566789999999999999999999999999999
Q ss_pred ceEE-----EeCceeeEEeeeccccceeeeecccCCCCCceEEEEEE
Q 004311 533 VDAT-----VGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGY 574 (762)
Q Consensus 533 v~v~-----~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 574 (762)
+++. ++.|+|+|||||.+.+++.++||+|+|+++||+.|++.
T Consensus 477 vev~~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 477 VDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp CCEEEEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred CCEEEeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 9976 57899999999999999999999999999999998764
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1e-81 Score=723.09 Aligned_cols=461 Identities=27% Similarity=0.476 Sum_probs=389.9
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-----eeEE
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-----YQIN 143 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i~ 143 (762)
.+++|||+|+||+|||||||+++|++.++.+...+ .+ .+++|+++.|+++|+|+.+....+.|+. +.++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~---~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~in 76 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KR---EQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLH 76 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------------CCCCSEEEEEECTTSCEEEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---cc---ccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEE
Confidence 35799999999999999999999999988875532 12 6789999999999999999999988863 8999
Q ss_pred EEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccc
Q 004311 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (762)
Q Consensus 144 liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (762)
|||||||.+|..++.++++.+|++|+|+|+++|++.||..+|..+...++|+++|+||+|+.++++.+..+++.+.++..
T Consensus 77 liDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 77 LIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD 156 (600)
T ss_dssp EECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC
T ss_pred EEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998887766666666554321
Q ss_pred eeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004311 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (762)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (762)
+
T Consensus 157 ~------------------------------------------------------------------------------- 157 (600)
T 2ywe_A 157 P------------------------------------------------------------------------------- 157 (600)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeec
Q 004311 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (762)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d 383 (762)
.+++++||++|.||++||++|.+++|+|. .++++|+.++||+++.|
T Consensus 158 ---------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~-------------------~~~~~pl~~lV~~~~~d 203 (600)
T 2ywe_A 158 ---------------EEAILASAKEGIGIEEILEAIVNRIPPPK-------------------GDPQKPLKALIFDSYYD 203 (600)
T ss_dssp ---------------GGCEECBTTTTBSHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEEEE
T ss_pred ---------------ccEEEEEeecCCCchHHHHHHHHhccccc-------------------ccccCCcceeEEEEeec
Confidence 23788899999999999999999999986 45788999999999999
Q ss_pred CC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc-cc----ccccCceeecCCCc
Q 004311 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-GV----DCASGDTFTDGSVK 457 (762)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~GdtL~~~~~~ 457 (762)
++ |+++++||++|++++||.|++.++++.++|.+++.+.+ +..+++++.||||+++. |+ ++++||||+...++
T Consensus 204 ~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 204 PYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp TTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSC
T ss_pred ccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCc
Confidence 98 99999999999999999999999999999999998887 47899999999999874 54 78999999998776
Q ss_pred --cccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhh
Q 004311 458 --YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRRE 530 (762)
Q Consensus 458 --~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~ 530 (762)
.+++++.+++|+++++++|.++.|+++|.++|++|.+|||+|++. +||+|.++.| ||||||||+++||+++
T Consensus 283 ~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re 360 (600)
T 2ywe_A 283 TKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLERE 360 (600)
T ss_dssp CSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhh
Confidence 468889999999999999999999999999999999999999987 5788877777 9999999999999999
Q ss_pred cCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHH
Q 004311 531 YKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFK 610 (762)
Q Consensus 531 f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~ 610 (762)
||+++.+++|+|+||||+.+. | ++ +.+ .|
T Consensus 361 ~~~~v~~~~P~V~yreti~~~------------g--~~----~~~-------------~~-------------------- 389 (600)
T 2ywe_A 361 YGVKIITTAPNVIYRVKKKFT------------D--EV----IEV-------------RN-------------------- 389 (600)
T ss_dssp SCCCEEECCCEECEEEEETTC------------S--SC----EEE-------------SS--------------------
T ss_pred cCceEEEEeeeEEEEEEecCC------------C--cE----EEE-------------eC--------------------
Confidence 999999999999999998741 1 11 111 11
Q ss_pred HHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhc
Q 004311 611 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINK 690 (762)
Q Consensus 611 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~ 690 (762)
| .|+|+.| +. -+.||||||+++|.+|++|+|+||++|++
T Consensus 390 ------p-~~~p~~~----------~~------------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~ 428 (600)
T 2ywe_A 390 ------P-MDFPDNA----------GL------------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQE 428 (600)
T ss_dssp ------G-GGSCSCG----------GG------------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred ------h-hhCCCCC----------cc------------------------cccccCCeEEEEEEecHHHHHHHHHHHHH
Confidence 1 4577665 11 13799999999999999999999999999
Q ss_pred CCceeeccccC-CCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004311 691 RKGMIVGNDQE-GDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 691 rrg~i~~~~~~-~~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
|||++.+++.. +++..|+|.+|++|| +||.++|||+|+|+|+|+++|+||+++
T Consensus 429 rrG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 429 KRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred cCcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 99999999985 568999999999999 899999999999999999999999998
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.3e-80 Score=713.73 Aligned_cols=458 Identities=29% Similarity=0.480 Sum_probs=383.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----CeeEEE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQINI 144 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~l 144 (762)
+++|||+|+||+|||||||+++|++.+|.+.... + + .+++|+++.|+++|+|+.+....+.|+ ++.++|
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~l 75 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-M--E---AQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNF 75 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-c--c---ccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEE
Confidence 5799999999999999999999999998876531 1 2 678999999999999999999999886 389999
Q ss_pred EeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccce
Q 004311 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 145 iDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (762)
||||||.+|..++.++++.+|++|+|+|+++|++.||..+|..+...++|+++|+||+|+.++++.+..+++.+.++..+
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887776777666553211
Q ss_pred eeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004311 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (762)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (762)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecC
Q 004311 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (762)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 384 (762)
.+++++||++|.||++|+++|.+++|+|. .++++|+.++||+++.|+
T Consensus 156 --------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-------------------~~~~~p~~alI~d~~~d~ 202 (599)
T 3cb4_D 156 --------------TDAVRCSAKTGVGVQDVLERLVRDIPPPE-------------------GDPEGPLQALIIDSWFDN 202 (599)
T ss_dssp --------------TTCEEECTTTCTTHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEEEET
T ss_pred --------------ceEEEeecccCCCchhHHHHHhhcCCCcc-------------------ccccCCceeeeeeccccc
Confidence 13678899999999999999999999986 457899999999999999
Q ss_pred C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc-c---c-ccccCceeecCCCc-
Q 004311 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCASGDTFTDGSVK- 457 (762)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~~GdtL~~~~~~- 457 (762)
+ |+++++||++|+|++||++.+.++++.++|.+++.+.+. .++++++.||||+++. | + ++.+||||++..++
T Consensus 203 ~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~ 281 (599)
T 3cb4_D 203 YLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPA 281 (599)
T ss_dssp TTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCC
T ss_pred cccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCcc
Confidence 8 999999999999999999999999999999999988875 7899999999998873 5 4 78999999998776
Q ss_pred -cccccCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhhc
Q 004311 458 -YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREY 531 (762)
Q Consensus 458 -~~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~f 531 (762)
..++.+..++|+++++++|.+..|.++|.++|++|.++||+|++. ++|+|.++.| ||||||||+++||+++|
T Consensus 282 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~ 359 (599)
T 3cb4_D 282 EKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREY 359 (599)
T ss_dssp SSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS
T ss_pred ccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHc
Confidence 568888999999999999999999999999999999999999987 5789877777 99999999999999999
Q ss_pred CceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHH
Q 004311 532 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 611 (762)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~ 611 (762)
|+++.+++|+|+||||+.+.. ++.|.| |.
T Consensus 360 ~~~~~~~~P~V~yreti~~g~--------------------------------~~~~~~-------p~------------ 388 (599)
T 3cb4_D 360 DLDLITTAPTVVYEVETTSRE--------------------------------VIYVDS-------PS------------ 388 (599)
T ss_dssp CCCEEECCCEECEEEEESSSC--------------------------------EEEESS-------GG------------
T ss_pred CceEEEEeeeEEEEEEecCCc--------------------------------eEEecC-------hh------------
Confidence 999999999999999987421 222222 11
Q ss_pred HHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcC
Q 004311 612 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 691 (762)
Q Consensus 612 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~r 691 (762)
++|.. ++ -+.||||||+++|.+|++|+|+||++|++|
T Consensus 389 --------~~p~~-----------~~------------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~r 425 (599)
T 3cb4_D 389 --------KLPAV-----------NN------------------------IYELREPIAECHMLLPQAYLGNVITLCVEK 425 (599)
T ss_dssp --------GSCCG-----------GG------------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHT
T ss_pred --------hCCCc-----------cc------------------------cchhhccceEEEEEeCHHHHHHHHHHHHHc
Confidence 12211 01 127999999999999999999999999999
Q ss_pred CceeeccccCCCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004311 692 KGMIVGNDQEGDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 743 (762)
Q Consensus 692 rg~i~~~~~~~~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 743 (762)
||++.+++..+++..|+|.+|++|| +||.++|||+|+|+|+|.++|+||+++
T Consensus 426 rG~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 426 RGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp TCEEEEEECCTTEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred CcEEeCcEecCCeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 9999999998889999999999999 899999999999999999999999998
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-75 Score=668.22 Aligned_cols=462 Identities=27% Similarity=0.442 Sum_probs=396.9
Q ss_pred ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC-ccccccCChhhhhhhcceeecceEEEeecCeeEEEEe
Q 004311 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (762)
Q Consensus 68 ~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (762)
..+++|||+|+||+|||||||+++|++.++.+...+.+..+. ....++|+.+.|+++|+|+.+....+.|+++.++|||
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD 88 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD 88 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence 346799999999999999999999999999998777766532 1256889999999999999999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceee
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (762)
||||.+|..++.++++.+|++|+|+|+.+|++.|+..+|..+...++|+++|+||+|+.+++..+.++++.+.++..+.+
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~ 168 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAP 168 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
+++|++.+..|.|++|++.++++.|++..+......++++++.+. ..++.|.+. +++|+++.++..++..
T Consensus 169 ~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~ 238 (528)
T 3tr5_A 169 VTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASH 238 (528)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSC
T ss_pred eecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhh
Confidence 999999999999999999999999986555433333444433222 111222111 3444443222211111
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEee--cC
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE--GR 384 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--d~ 384 (762)
..+++.+..+.++||||+||++|.||++||++|++++|+|.+...... .. ...++||+++|||+.. ||
T Consensus 239 ~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~---------~~-~~~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 239 PFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR---------LV-KPEEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp CCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS---------CB-CTTSSSCEEEEEEEEECCC-
T ss_pred HHHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce---------ee-CCCcccceeEEEEEecccCc
Confidence 122667778999999999999999999999999999999986533210 01 1246899999999986 88
Q ss_pred -C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccc
Q 004311 385 -F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMT 461 (762)
Q Consensus 385 -~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~ 461 (762)
+ |+++|+|||||+|++||.|++.+.+++++|++++.++|.+++++++|.|||||++.|+ ++++|||||+. .+..++
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~ 387 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFT 387 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccC
Confidence 7 9999999999999999999999999999999999999999999999999999999999 89999999984 456677
Q ss_pred cCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCce
Q 004311 462 SMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPR 541 (762)
Q Consensus 462 ~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~ 541 (762)
++.++.|+++++|+|+++.|.++|.++|++|.+|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|.
T Consensus 388 ~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 388 GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 7888899999999999999999999999999999996 788899999999999999999999999999999999999999
Q ss_pred eeEEeeeccc
Q 004311 542 VNFREAVTKR 551 (762)
Q Consensus 542 V~yrEti~~~ 551 (762)
|+|+++|...
T Consensus 467 v~~~~~i~~~ 476 (528)
T 3tr5_A 467 VVTARWVICD 476 (528)
T ss_dssp CCEEEEEECS
T ss_pred eEEEEEecCC
Confidence 9999999764
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=8.1e-75 Score=662.18 Aligned_cols=461 Identities=26% Similarity=0.458 Sum_probs=369.5
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCc-cccccCChhhhhhhcceeecceEEEeecCeeEEEEeC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (762)
.+++|||+|+||+|||||||+++|++..+.+...+.+.++.. ..+++|+.+.|+++|+|+.+....+.|+++.++||||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 467899999999999999999999998888876666554321 2568899999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
|||.+|..++.++++.+|++|+|+|+.+|+..|+..+|..+...++|+++|+||+|+.+++..+.++++.+.++..+.++
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPI 169 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEe-cCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT-GEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~-~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (762)
++|++.+..+.|+.|++++.++.|....|..... .++| ++.+. .+.+. .++.++++|+++.++..+++.
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~-~~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVK-GLNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEEC-CSSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCC-CCCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 9999999999999999999999996533332111 2232 11111 12222 266778888776444433333
Q ss_pred HHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEee--c-
Q 004311 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE--G- 383 (762)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--d- 383 (762)
..+++.+..+.++||+||||++|.||+.||++|++++|+|.++... ...+.+ .++||+++|||+.. |
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~-~~~~~~~~vfKi~~~~d~ 309 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD---------TRTVEA-SEDKFTGFVFKIQANMDP 309 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS---------SCEECT-TCCSCEEEEEEECSSCCS
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc---------ccccCC-CCCCeEEEEEEEeeccCc
Confidence 3456677888999999999999999999999999999999854321 001112 26899999999976 4
Q ss_pred CC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-ccccCceeecCCCccccc
Q 004311 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMT 461 (762)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~ 461 (762)
++ |+++|+|||||+|++||+|++.+.|+.++|++|+.++|.+++++++|.|||||++.|+ ++++||||++.. ...++
T Consensus 310 ~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~ 388 (529)
T 2h5e_A 310 KHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFT 388 (529)
T ss_dssp SSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBC
T ss_pred CCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccC
Confidence 45 9999999999999999999999999999999999999999999999999999999999 899999999876 46788
Q ss_pred cCCCCcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcCceEEEeCce
Q 004311 462 SMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPR 541 (762)
Q Consensus 462 ~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~ 541 (762)
++.+++|+++++|+|.++.|.++|.++|++|++||| +++..+++|||++|+|||||||||+++||+++||+++.+++|+
T Consensus 389 ~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~ 467 (529)
T 2h5e_A 389 GIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVN 467 (529)
T ss_dssp CCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 888899999999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred eeEEeeeccc
Q 004311 542 VNFREAVTKR 551 (762)
Q Consensus 542 V~yrEti~~~ 551 (762)
|+|||||...
T Consensus 468 v~y~eti~~~ 477 (529)
T 2h5e_A 468 VATARWVECA 477 (529)
T ss_dssp CSEEEEEECS
T ss_pred eeEEEEEcCC
Confidence 9999999654
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.4e-41 Score=354.88 Aligned_cols=196 Identities=23% Similarity=0.412 Sum_probs=160.8
Q ss_pred EEccc-ccccCceeecCCCccccccCCCCcceeeeeeecCCC----CC-----HHHHHHHHHHHHHcCCceEEEEcCCCC
Q 004311 439 AVFGV-DCASGDTFTDGSVKYTMTSMHVPEPVMSLAVQPVSK----DS-----GGQFSKALNRFQKEDPTFRVGLDAESG 508 (762)
Q Consensus 439 ~i~gl-~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~~iep~~~----~d-----~~kl~~~L~~L~~eDPsl~v~~~~etg 508 (762)
++.|+ ++.+|||||+..++..++++.+++|+++++|+|++. .| ..+|.++|.+|.++||+|++..+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 57788 899999999998888899999999999999999987 65 679999999999999999999999999
Q ss_pred cEEEEecchhHHHHHHHHHHhhcCceEEEeCceeeEEeeeccccceeeeecccCCCCCceEEEEEEEEeCCCCCCCCcee
Q 004311 509 QTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEF 588 (762)
Q Consensus 509 e~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~ 588 (762)
|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~-------------------------------------- 120 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D-------------------------------------- 120 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T--------------------------------------
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C--------------------------------------
Confidence 9999999999999999999999 9999999999999997 0
Q ss_pred eecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeee
Q 004311 589 ENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEP 668 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEP 668 (762)
| +||||
T Consensus 121 ---------------------------G-----------------------------------------------~llEP 126 (332)
T 3e3x_A 121 ---------------------------G-----------------------------------------------QLMEP 126 (332)
T ss_dssp ---------------------------T-----------------------------------------------EEEEE
T ss_pred ---------------------------C-----------------------------------------------EEECc
Confidence 0 48999
Q ss_pred eEEEEEEecccchHHHHHHHhcCCceeeccccCC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecC-Chh
Q 004311 669 VMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV-SQD 746 (762)
Q Consensus 669 i~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v-~~~ 746 (762)
||.++|.||++|+|.||++|++|||+|.+++..+ +.+.|+|++|+++|+||.++||++|+|+|+|+++|+||+++ |++
T Consensus 127 i~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~ 206 (332)
T 3e3x_A 127 FETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGN 206 (332)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCS
T ss_pred EEEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCc
Confidence 9999999999999999999999999999999874 68899999999999999999999999999999999999999 887
Q ss_pred HHH
Q 004311 747 VQL 749 (762)
Q Consensus 747 ~~~ 749 (762)
++.
T Consensus 207 i~~ 209 (332)
T 3e3x_A 207 IGQ 209 (332)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.4e-36 Score=338.60 Aligned_cols=281 Identities=21% Similarity=0.271 Sum_probs=223.9
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee----------eecCCCccccccCChhhhhhhcceeecceEEEeec
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (762)
.+..+||+++||+|+|||||+++|++.++.+.... ...+...+++++|..++|+++|+|++.....+.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999999999999988875531 11122345789999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcc-------hhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChh
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVP-RLAFINKLDRMGADPW 210 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~ 210 (762)
++.++|||||||.+|...+..+++.+|++|||||+.+|+. .||++++..+...++| +|+|+||||+...++.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 9999999999999999999999999999999999999986 7999999999999999 8999999999654432
Q ss_pred -HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHH
Q 004311 211 -KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDK 289 (762)
Q Consensus 211 -~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~ 289 (762)
...+++.+.+
T Consensus 174 ~~~~~~i~~~~--------------------------------------------------------------------- 184 (439)
T 3j2k_7 174 NERYEECKEKL--------------------------------------------------------------------- 184 (439)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 1122211111
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHH-----------HHHhcCCCCcccccccccccC
Q 004311 290 LGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLD-----------GVLSYLPCPTEVSNYALDQKN 358 (762)
Q Consensus 290 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld-----------~i~~~lPsP~~~~~~~~~~~~ 358 (762)
..|+....+ .....+|++.+||++|.|++++++ .+.+.+|.|.
T Consensus 185 --~~~l~~~g~-------------~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~----------- 238 (439)
T 3j2k_7 185 --VPFLKKVGF-------------NPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFN----------- 238 (439)
T ss_pred --HHHHHHhcc-------------cccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCc-----------
Confidence 000000000 001236888999999999998433 2345566654
Q ss_pred ccceeeccCCCCCCeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEE
Q 004311 359 NEEKVILSGNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIV 438 (762)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv 438 (762)
.+.+.|+.+.|..++.+ .|+++.|||.+|+|++||.|.+.+.+.+.+|++|+. ...++++|.|||.|
T Consensus 239 --------~~~~~p~r~~v~~~~~~-~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG~~v 305 (439)
T 3j2k_7 239 --------RSVDGPIRLPIVDKYKD-MGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPGENL 305 (439)
T ss_pred --------cCCCCCeEEEEEEEEcC-CCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCCCcc
Confidence 35678999999988753 499999999999999999999999999999999874 45689999999999
Q ss_pred E--Eccc---ccccCceeecCCCc
Q 004311 439 A--VFGV---DCASGDTFTDGSVK 457 (762)
Q Consensus 439 ~--i~gl---~~~~GdtL~~~~~~ 457 (762)
+ +.|+ +++.||+|++++++
T Consensus 306 ~~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 306 KIRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred eEEEeccchhhcCCcEEecCCCCC
Confidence 9 7787 68899999987654
No 15
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3.3e-37 Score=355.44 Aligned_cols=330 Identities=22% Similarity=0.250 Sum_probs=244.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-------------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------- 137 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------- 137 (762)
+.++|+|+||+|||||||+++|+........ .+|+|.......+.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e---------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~ 62 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE---------------------AGGITQHIGATEIPMDVIEGICGDFLKK 62 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-------------------------CCCBTTEEEEEHHHHHHHSCGGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc---------------------CCceecccCeEEEeechhhhhccccccc
Confidence 4578999999999999999999864321110 024444433333332
Q ss_pred -----cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHH
Q 004311 138 -----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 212 (762)
Q Consensus 138 -----~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~ 212 (762)
....++|||||||.+|..++.++++.+|++|+|+|+++|++.||.+.|..+...++|+++|+||+|+.......
T Consensus 63 ~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~- 141 (594)
T 1g7s_A 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH- 141 (594)
T ss_dssp CGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC-
T ss_pred cccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc-
Confidence 22369999999999999999999999999999999999999999999999999999999999999996421000
Q ss_pred HHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q 004311 213 LDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGD 292 (762)
Q Consensus 213 ~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e 292 (762)
.+ .++++.........+..+.+.+.+.++.+++
T Consensus 142 ------------------------------------------~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e 174 (594)
T 1g7s_A 142 ------------------------------------------EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHE 174 (594)
T ss_dssp ------------------------------------------TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001111111123445556666666666776
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCC
Q 004311 293 MFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGP 372 (762)
Q Consensus 293 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p 372 (762)
.+++..... .++ .....+|++++||++|.||++|+++|..++|+|.+. ...+++++|
T Consensus 175 ~gl~~e~~~------~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~--------------~l~~~~~~p 231 (594)
T 1g7s_A 175 EGFESERFD------RVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE--------------QLKIEEDSP 231 (594)
T ss_dssp TTCEEEEGG------GCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG--------------GGEECTTSB
T ss_pred cCcchHHHH------HHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchh--------------hhccccCCC
Confidence 666432110 000 124568999999999999999999999988865421 012457889
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEE--EcCeEEEee--------cCccccccccc--CCCEEE
Q 004311 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKI--KVPRLVRMH--------SNEMEDIQEAH--AGQIVA 439 (762)
Q Consensus 373 ~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~--ki~~i~~~~--------g~~~~~v~~a~--aGdIv~ 439 (762)
+.++||+++.+++ |+++++||++|+|++||.|++.+.+..+ +|.+|+.+. +.+..++++|. +|++++
T Consensus 232 ~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~ 311 (594)
T 1g7s_A 232 ARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV 311 (594)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE
T ss_pred ceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE
Confidence 9999999999998 9999999999999999999998877644 999999873 66778899998 999999
Q ss_pred Eccc-ccccCceeecCCCcc--------ccccCCCCcceeeeeeecCCCCCHHHHHHHHHHH
Q 004311 440 VFGV-DCASGDTFTDGSVKY--------TMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRF 492 (762)
Q Consensus 440 i~gl-~~~~GdtL~~~~~~~--------~l~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L 492 (762)
+.|| ++.+||||+...+.. .+..+.+..+.+.+.|.+......+.|..+|+++
T Consensus 312 ~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 312 APGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp CSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred EcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999 889999999775431 1223344456778888888888888898888886
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=6.9e-35 Score=324.38 Aligned_cols=272 Identities=26% Similarity=0.366 Sum_probs=216.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+..+||+++||+|||||||+++|+..... .+.. ......+.+|..+.|+++|+|++.....+.++++.++||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~-~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAA---ENPN-VEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHH---SCTT-SCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhh---cCcc-ccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence 45689999999999999999999863110 0000 0000123578999999999999998888999999999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHhccceeeee
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (762)
|.+|...+.++++.+|++|+|+|+.+|...|+.++|..+...++| +++|+||+|+.. + .+.++.+...
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~-~~~~~~~~~~--------- 153 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-D-PELLDLVEME--------- 153 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-C-HHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-c-HHHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999 789999999864 1 1111111100
Q ss_pred ecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004311 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (762)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (762)
+.+.
T Consensus 154 ----------------------------------------------------------------------------~~~~ 157 (405)
T 2c78_A 154 ----------------------------------------------------------------------------VRDL 157 (405)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0000
Q ss_pred HHHHHhcCcceeeecccccCCCc------------------hHHHHHHHHhcCCCCcccccccccccCccceeeccCCCC
Q 004311 309 IRRATVARKFIPVFMGSAFKNKG------------------VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPD 370 (762)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~G------------------i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 370 (762)
+...-....-+|++++||++|.| +++|+++|.+++|.|. .+.+
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~-------------------~~~~ 218 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV-------------------RDVD 218 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC-------------------CCCS
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC-------------------CCCC
Confidence 00000001236889999999987 8999999999999886 3467
Q ss_pred CCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCC---eEEEcCeEEEeecCcccccccccCCCEEEEc--cc-
Q 004311 371 GPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV- 443 (762)
Q Consensus 371 ~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl- 443 (762)
+|+.++|++++.+++ |++++|||++|+|++||.|.+.+.+ ...+|++|... ..++++|.|||++++. |+
T Consensus 219 ~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~ 294 (405)
T 2c78_A 219 KPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVS 294 (405)
T ss_dssp SCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSCC
T ss_pred CCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCc
Confidence 899999999999987 9999999999999999999998877 57899998743 3689999999999864 65
Q ss_pred --ccccCceeecCC
Q 004311 444 --DCASGDTFTDGS 455 (762)
Q Consensus 444 --~~~~GdtL~~~~ 455 (762)
++..||+|++++
T Consensus 295 ~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 295 REEVERGQVLAKPG 308 (405)
T ss_dssp TTTCCTTCEEESTT
T ss_pred HhhcCceEEEEcCC
Confidence 789999999875
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=5.8e-35 Score=327.63 Aligned_cols=279 Identities=24% Similarity=0.278 Sum_probs=207.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee--e-----ecCC---CccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--E-----VRGR---DGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~--~-----v~~~---~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+..+||+++||+|||||||+++|++.++.+.... . ...+ ..+++++|..++|+++|+|++.....+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 4678999999999999999999999876654321 0 0001 1123678999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChh-
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW- 210 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~- 210 (762)
+.++|||||||.+|...+.++++.+|++|+|+|+.+| +..|+++++..+...++| +++++||+|+..+++.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 788999999999999985 7899999999764321
Q ss_pred HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q 004311 211 KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKL 290 (762)
Q Consensus 211 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l 290 (762)
+.++.+.+.+
T Consensus 164 ~~~~~~~~~i---------------------------------------------------------------------- 173 (435)
T 1jny_A 164 KRYKEIVDQV---------------------------------------------------------------------- 173 (435)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 1111111110
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchH------------HHHHHHHhcCCCCcccccccccccC
Q 004311 291 GDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYALDQKN 358 (762)
Q Consensus 291 ~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~~~~~~ 358 (762)
.+.+...-....-+|++.+||++|.|+. .|++++.. +|.|.
T Consensus 174 ---------------~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~----------- 226 (435)
T 1jny_A 174 ---------------SKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPP----------- 226 (435)
T ss_dssp ---------------HHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCC-----------
T ss_pred ---------------HHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCC-----------
Confidence 0001000000012678889999999996 68888654 55554
Q ss_pred ccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCE
Q 004311 359 NEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQI 437 (762)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdI 437 (762)
.+.+.|+.+.|..++..++ |++++|||++|+|++||.|++.+.+...+|++|... ..++++|.|||+
T Consensus 227 --------~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG~~ 294 (435)
T 1jny_A 227 --------KPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPGDN 294 (435)
T ss_dssp --------CGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTTCE
T ss_pred --------CCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCCCE
Confidence 1235788888888888887 999999999999999999999999999999999742 468999999999
Q ss_pred EEE--ccc---ccccCceeecCCCc
Q 004311 438 VAV--FGV---DCASGDTFTDGSVK 457 (762)
Q Consensus 438 v~i--~gl---~~~~GdtL~~~~~~ 457 (762)
|++ .|+ ++.+||+|++...+
T Consensus 295 v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 295 IGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEEEecCCHHHcCCccEecCCCCC
Confidence 997 454 78999999987543
No 18
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5.5e-35 Score=324.11 Aligned_cols=269 Identities=25% Similarity=0.324 Sum_probs=212.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..||+++||+|||||||+++|+...... +. ......+.+|..+.|+++|+|++.....+.++++.++|||||||.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~---g~--~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEG---GG--AKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHT---TS--BCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhc---Cc--cccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 4689999999999999999998642110 00 000012357888899999999999888888889999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeec
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 230 (762)
+|...+.++++.+|++|+|+|+.+|...||+++|..+...++| +++|+||+|+.. + .+.++.+.+.
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~-~~~~~~~~~~----------- 144 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-D-SEMVELVELE----------- 144 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-C-HHHHHHHHHH-----------
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-C-HHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999 589999999864 1 1111111000
Q ss_pred CCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004311 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (762)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (762)
+.+.+.
T Consensus 145 --------------------------------------------------------------------------~~~~l~ 150 (397)
T 1d2e_A 145 --------------------------------------------------------------------------IRELLT 150 (397)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 000110
Q ss_pred HHHhcCcceeeecccccCCC---------c-hHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEE
Q 004311 311 RATVARKFIPVFMGSAFKNK---------G-VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKL 380 (762)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~---------G-i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 380 (762)
..-.....+|++++||++|. | +++|+++|.+++|.|. .+.++|+.++|+++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~-------------------~~~~~p~~~~v~~v 211 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT-------------------RDLEKPFLLPVESV 211 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC-------------------CCTTSCCEEECCEE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC-------------------CCCCCcEEEEEEEE
Confidence 00001123689999999976 4 9999999999999886 35678999999999
Q ss_pred eecCC-ccEEEEEEEeeeecCCCeEEecCCC--eEEEcCeEEEeecCcccccccccCCCEEEEc--cc---ccccCceee
Q 004311 381 EEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV---DCASGDTFT 452 (762)
Q Consensus 381 ~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~GdtL~ 452 (762)
+.+++ |++++|||++|+|++||+|.+.+.+ +..+|++|... ..++++|.|||++++. |+ ++..||+|+
T Consensus 212 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 212 YSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp EEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEe
Confidence 99997 9999999999999999999988765 67889888643 3689999999999864 66 788999999
Q ss_pred cCC
Q 004311 453 DGS 455 (762)
Q Consensus 453 ~~~ 455 (762)
+++
T Consensus 288 ~~~ 290 (397)
T 1d2e_A 288 KPG 290 (397)
T ss_dssp STT
T ss_pred CCC
Confidence 865
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-35 Score=341.47 Aligned_cols=276 Identities=21% Similarity=0.244 Sum_probs=184.4
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee-------ee---cCCCccccccCChhhhhhhcceeecceEEEeec
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH-------EV---RGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~-------~v---~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (762)
.+.++||+|+||+|||||||+++|++.++.+.... .. .....+.+++|..+.|+++|+|++.....+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45689999999999999999999999887765321 00 112234789999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChh
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW 210 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-------~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~ 210 (762)
++.++|||||||.+|...+..+++.+|++|||||+.+|. ..||.+++..+...++| +|+|+||+|+..++..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 999999999999999999999999999999999999864 89999999999999998 8899999999754321
Q ss_pred ---HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCC
Q 004311 211 ---KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVD 287 (762)
Q Consensus 211 ---~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~d 287 (762)
...+++...+.
T Consensus 334 ~~~~i~~el~~~l~------------------------------------------------------------------ 347 (592)
T 3mca_A 334 RFQEIKNIVSDFLI------------------------------------------------------------------ 347 (592)
T ss_dssp HHHHHHHHHHHHHT------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 11122221110
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchH--------------HHHHHHHhcCCCCccccccc
Q 004311 288 DKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ--------------PLLDGVLSYLPCPTEVSNYA 353 (762)
Q Consensus 288 d~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~--------------~Lld~i~~~lPsP~~~~~~~ 353 (762)
....+. ..-+|++.+||++|.||. .|++.|..++| |.
T Consensus 348 --------~~~g~~--------------~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~------ 398 (592)
T 3mca_A 348 --------KMVGFK--------------TSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PE------ 398 (592)
T ss_dssp --------TTSCCC--------------GGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CS------
T ss_pred --------HhhCCC--------------ccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-cc------
Confidence 000000 013688899999999998 79999998887 32
Q ss_pred ccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccc-c
Q 004311 354 LDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQ-E 431 (762)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~-~ 431 (762)
.+.+.|+.+.|..++.. + |+++.|||.+|+|++||.|.+.+.+...+|+.|.. ...+++ +
T Consensus 399 -------------~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~----~~~~~~~~ 460 (592)
T 3mca_A 399 -------------KPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR----NSDPSSTW 460 (592)
T ss_dssp -------------CTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC----SSSCSCCE
T ss_pred -------------ccccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE----cCccCcce
Confidence 35678999999999998 7 99999999999999999999999999999999984 346899 9
Q ss_pred ccCCCEEE--Eccc---ccccCceeecCCCc
Q 004311 432 AHAGQIVA--VFGV---DCASGDTFTDGSVK 457 (762)
Q Consensus 432 a~aGdIv~--i~gl---~~~~GdtL~~~~~~ 457 (762)
|.|||+|+ +.|+ +++.||+|++++.+
T Consensus 461 a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 461 AVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp EETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred ecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 99999998 5676 68899999987643
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=3.6e-34 Score=323.47 Aligned_cols=279 Identities=21% Similarity=0.269 Sum_probs=186.5
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee----------eecCCCccccccCChhhhhhhcceeecceEEEeec
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (762)
.+..+||+++||+|||||||+++|++.++.+.... .-...+.+.+++|..+.|+++|+|++.....+.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 35678999999999999999999999888764210 00112234678999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcc-------hhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChh
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVP-RLAFINKLDRMGADPW 210 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~ 210 (762)
++.++|||||||.+|...+.++++.+|++|||||+.+|+. .||++++..+...++| +|+|+||+|+...++.
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 9999999999999999999999999999999999999974 7999999999999998 8999999999654421
Q ss_pred -HHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHH
Q 004311 211 -KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDK 289 (762)
Q Consensus 211 -~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~ 289 (762)
+.++.+...+
T Consensus 200 ~~~~~~i~~e~--------------------------------------------------------------------- 210 (467)
T 1r5b_A 200 EERYKECVDKL--------------------------------------------------------------------- 210 (467)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 1112111110
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhc--CcceeeecccccCCCchHH--------------HHHHHHhcCCCCccccccc
Q 004311 290 LGDMFLSDEPISSGDLEEAIRRATVA--RKFIPVFMGSAFKNKGVQP--------------LLDGVLSYLPCPTEVSNYA 353 (762)
Q Consensus 290 l~e~~l~~~~~~~~~l~~~l~~~~~~--~~~~Pv~~~SA~~~~Gi~~--------------Lld~i~~~lPsP~~~~~~~ 353 (762)
.+.+...... ..-+|++.+||++|.|+++ |++.+ +.+|.|.
T Consensus 211 ----------------~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~------ 267 (467)
T 1r5b_A 211 ----------------SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLE------ 267 (467)
T ss_dssp ----------------HHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCH------
T ss_pred ----------------HHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCc------
Confidence 0000000000 0136888899999999875 45544 5577664
Q ss_pred ccccCccceeeccCCCCCCeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCccccccccc
Q 004311 354 LDQKNNEEKVILSGNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (762)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~ 433 (762)
.+.++||.+.|..++.+ .|+++.|||.+|+|++||.|.+.+.+...+|++|+. ....++++|.
T Consensus 268 -------------~~~~~p~~~~v~~~~~~-~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~---~~~~~~~~a~ 330 (467)
T 1r5b_A 268 -------------RKVNAPFIMPIASKYKD-LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYD---EADEEISSSI 330 (467)
T ss_dssp -------------HHHTSCCEEECCEEEES-SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEEC---TTCCEESEEE
T ss_pred -------------CCCCCCcEEEEEEEEeC-CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEec---cCCcEeeEEc
Confidence 23568999999988764 589999999999999999999999898889988873 2356899999
Q ss_pred CCCEEEE--cc-c-ccccCceeecCCC
Q 004311 434 AGQIVAV--FG-V-DCASGDTFTDGSV 456 (762)
Q Consensus 434 aGdIv~i--~g-l-~~~~GdtL~~~~~ 456 (762)
|||+|++ .| . +++.||+|+++++
T Consensus 331 aG~~v~i~l~g~~~~i~rG~vl~~~~~ 357 (467)
T 1r5b_A 331 CGDQVRLRVRGDDSDVQTGYVLTSTKN 357 (467)
T ss_dssp TTCEEEEEEESCCTTCCTTCEEECSSS
T ss_pred CCCEEEEEEeccHhhCCceEEEeCCCC
Confidence 9999997 56 4 7899999998754
No 21
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4.4e-33 Score=316.48 Aligned_cols=282 Identities=20% Similarity=0.229 Sum_probs=203.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee---------ee-cCCCccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------EV-RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~---------~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+...||+++||+|+|||||+++|++..+.+.... .. .+...+.+++|....|+++|+|++.....+.+++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4568999999999999999999999877664310 00 1223457789999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhH
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWK 211 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 211 (762)
+.++|||||||.+|...+..+++.+|++|+|+|+.+| +..|+.+++..+...++| +|+|+||+|+...+. .
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~-~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-Q 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH-H
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH-H
Confidence 9999999999999999999999999999999999998 668999999999998865 899999999865321 1
Q ss_pred HHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q 004311 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (762)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (762)
..+++.+.+
T Consensus 190 ~~~~i~~~~----------------------------------------------------------------------- 198 (483)
T 3p26_A 190 RFEEIKSKL----------------------------------------------------------------------- 198 (483)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111111
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------------HHHHHHhcCCC--Cccccc
Q 004311 292 DMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------------LLDGVLSYLPC--PTEVSN 351 (762)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------------Lld~i~~~lPs--P~~~~~ 351 (762)
...+...-.....+|++.+||++|.|+++ +|+.+...+|. |.
T Consensus 199 --------------~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~---- 260 (483)
T 3p26_A 199 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEG---- 260 (483)
T ss_dssp --------------HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTT----
T ss_pred --------------HHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccccc----
Confidence 00000000011247889999999999873 34444444443 22
Q ss_pred ccccccCccceeeccCCCCCCeEEEEEEEeecC---C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEee----c
Q 004311 352 YALDQKNNEEKVILSGNPDGPLVALAFKLEEGR---F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMH----S 423 (762)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~---~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~----g 423 (762)
.+.+.|+.+.|..++..+ + |+++.|||.+|+|++||.|.+.+.+...+|++|.... |
T Consensus 261 ---------------~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~ 325 (483)
T 3p26_A 261 ---------------INKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQS 325 (483)
T ss_dssp ---------------CCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC---
T ss_pred ---------------ccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccc
Confidence 346789999999998875 4 8999999999999999999999999999999998653 4
Q ss_pred CcccccccccCCCEEEE--ccc---ccccCceeecCCC
Q 004311 424 NEMEDIQEAHAGQIVAV--FGV---DCASGDTFTDGSV 456 (762)
Q Consensus 424 ~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~~~~~ 456 (762)
..+.++++|.|||+|++ .|+ +++.||+|+++++
T Consensus 326 ~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 326 TNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp --CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 45689999999999997 343 7899999998765
No 22
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.8e-33 Score=312.91 Aligned_cols=278 Identities=23% Similarity=0.254 Sum_probs=209.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceee------------eeecCCCccccccCChhhhhhhcceeecceEEEee
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI------------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (762)
+..+||+++||+|||||||+++|++..+.+... +.......+.+.+|..++|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999887655321 11111112245689999999999999999999999
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 216 (762)
++..++|||||||.+|...+..+++.+|++|+|+|+.+|...|+.+++..+...++| +++|+||+|+...+.. .++++
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~-~~~~i 180 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER-VFESI 180 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH-HHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999988986 7899999999754321 11111
Q ss_pred HHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Q 004311 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (762)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (762)
.+.+ ..+++
T Consensus 181 ~~~~-----------------------------------------------------------------------~~~~~ 189 (434)
T 1zun_B 181 KADY-----------------------------------------------------------------------LKFAE 189 (434)
T ss_dssp HHHH-----------------------------------------------------------------------HHHHH
T ss_pred HHHH-----------------------------------------------------------------------HHHHH
Confidence 1110 00000
Q ss_pred CCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHH------------HHHHHHhcCCCCcccccccccccCccceee
Q 004311 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (762)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~ 364 (762)
... .....+|++.+||++|.|+++ |++. .+.+|.|.
T Consensus 190 ~~g--------------~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~----------------- 237 (434)
T 1zun_B 190 GIA--------------FKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIAS----------------- 237 (434)
T ss_dssp TTT--------------CCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTT-----------------
T ss_pred HhC--------------CCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCcc-----------------
Confidence 000 001236888999999999987 5554 45566654
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc
Q 004311 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV 443 (762)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl 443 (762)
.+.+.|+.+.|..++...+ |+...|||.+|+|++||.|.+.+.++..+|++|.... .++++|.|||++++.+.
T Consensus 238 --~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~ 311 (434)
T 1zun_B 238 --DRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTME 311 (434)
T ss_dssp --CCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEES
T ss_pred --cCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEEeC
Confidence 3457899999888876655 7888999999999999999999999999999998653 47999999999998764
Q ss_pred ---ccccCceeecCCCc
Q 004311 444 ---DCASGDTFTDGSVK 457 (762)
Q Consensus 444 ---~~~~GdtL~~~~~~ 457 (762)
+++.||+|+..+++
T Consensus 312 ~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 312 DEIDISRGDLLVHADNV 328 (434)
T ss_dssp SCCCCCTTCEEEETTSC
T ss_pred CccccCCccEEECCCCC
Confidence 57899999987643
No 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.7e-33 Score=307.96 Aligned_cols=240 Identities=14% Similarity=0.073 Sum_probs=196.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+||+++||+|+|||||+++|+ ++|+|++.....++++++.++|||||||.+
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~-----------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG-----------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS-----------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHH-----------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 499999999999999999993 378999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEe-CCCCCCCCh-hHHHHHHHHHhccceeeeee
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFIN-KLDRMGADP-WKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviN-K~D~~~~~~-~~~~~~i~~~l~~~~~~~~~ 229 (762)
|...+.++++.+|++|+|+| .+|...||++++..+...++|. ++++| |+|+ ..+. ....+++.+.+.
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~-------- 142 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITS-------- 142 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999 9999999999999999999999 99999 9998 3221 112222222211
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
..
T Consensus 143 -------------------------------------------------------------------~~----------- 144 (370)
T 2elf_A 143 -------------------------------------------------------------------GT----------- 144 (370)
T ss_dssp -------------------------------------------------------------------TS-----------
T ss_pred -------------------------------------------------------------------hc-----------
Confidence 00
Q ss_pred HHHHhcCcceeeec--ccccC---CCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecC
Q 004311 310 RRATVARKFIPVFM--GSAFK---NKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~--~SA~~---~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 384 (762)
....+|+++ +||++ |.|+++|++.|.+++|+|..... .....|+.++|..++..+
T Consensus 145 -----~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~---------------~~~~~p~r~~v~~vf~~~ 204 (370)
T 2elf_A 145 -----VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENA---------------ELNSLPARIFIDHAFNVT 204 (370)
T ss_dssp -----TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHH---------------HGGGSCCEEEEEEEECCC
T ss_pred -----CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCc---------------ccccccccccceeEEEcC
Confidence 012378999 99999 99999999999999887621100 002356677777777777
Q ss_pred C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEc--cc---ccccCceeec
Q 004311 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV---DCASGDTFTD 453 (762)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~GdtL~~ 453 (762)
+ |++++|||++|++++||+|++.+.+...+|++|... .+++++|.|||+|++. |+ ++++||+|+.
T Consensus 205 ~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 205 GKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH----DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp ---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEET----TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEEC----CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 7 999999999999999999999999999999999643 3689999999999975 64 7899999997
No 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=8.2e-33 Score=308.15 Aligned_cols=255 Identities=22% Similarity=0.310 Sum_probs=196.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (762)
+..+||+++||+|||||||+++|+. ...|..++|+++|+|+......+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g------------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~ 69 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTG------------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS 69 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT------------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC------------------CccccChhhhcCCcEEEEeeeeeeccccccccccccc
Confidence 4578999999999999999999951 13566778899999998876655541
Q ss_pred ------------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHHcCC-CEEEEEeCCCC
Q 004311 139 ------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEV-PRLAFINKLDR 204 (762)
Q Consensus 139 ------------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~~-p~iiviNK~D~ 204 (762)
...++|||||||.+|...+.+++..+|++|||+|+.+|. +.||.+++..+...++ |+++|+||+|+
T Consensus 70 ~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 70 PVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp SBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 178999999999999999999999999999999999998 8999999998888776 67899999998
Q ss_pred CCCCh-hHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHH
Q 004311 205 MGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELV 283 (762)
Q Consensus 205 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~ 283 (762)
...+. ....+++.+
T Consensus 150 ~~~~~~~~~~~~i~~----------------------------------------------------------------- 164 (410)
T 1kk1_A 150 VDKEKALENYRQIKE----------------------------------------------------------------- 164 (410)
T ss_dssp SCHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 64221 011111111
Q ss_pred hcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCcccee
Q 004311 284 SEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKV 363 (762)
Q Consensus 284 ~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~ 363 (762)
|+.+. ....+|++++||++|.|+++|+++|.+++|.|.
T Consensus 165 ----------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~---------------- 202 (410)
T 1kk1_A 165 ----------FIEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPK---------------- 202 (410)
T ss_dssp ----------HHTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC----------------
T ss_pred ----------HHHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc----------------
Confidence 11110 012368999999999999999999999999885
Q ss_pred eccCCCCCCeEEEEEEEee--------cCC-ccEEEEEEEeeeecCCCeEEecCCCe------------EEEcCeEEEee
Q 004311 364 ILSGNPDGPLVALAFKLEE--------GRF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVRMH 422 (762)
Q Consensus 364 ~~~~~~~~p~~~~V~k~~~--------d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~ 422 (762)
.+.+.|+.++|.+.+. +++ |.+++|||++|+|++||+|.+.+.++ ..+|..|+
T Consensus 203 ---~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~--- 276 (410)
T 1kk1_A 203 ---RDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ--- 276 (410)
T ss_dssp ---CCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE---
T ss_pred ---cccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE---
Confidence 3457788999988764 344 88999999999999999999876542 34555555
Q ss_pred cCcccccccccCCCEEEEc-----cc---ccccCceeecCCC
Q 004311 423 SNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSV 456 (762)
Q Consensus 423 g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~ 456 (762)
. ...++++|.|||++++. ++ ++..|++|+.++.
T Consensus 277 ~-~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 277 A-GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp E-TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred E-CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCC
Confidence 2 35689999999988874 23 5678999988654
No 25
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=6.9e-33 Score=312.28 Aligned_cols=276 Identities=24% Similarity=0.302 Sum_probs=215.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeee---------ee-cCCCccccccCChhhhhhhcceeecceEEEeecCe
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------EV-RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY 140 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~---------~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 140 (762)
...||+++||+|||||||+++|++..+.+.... +. .+...+++++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 458999999999999999999998876553210 00 11123356789999999999999999999999999
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcch-------hHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHH
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQS-------QSITVDRQMRRYEVP-RLAFINKLDRMGADPWKV 212 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~-------qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~ 212 (762)
.++|||||||.+|...+..+++.+|++|||+|+.+|... |+.+++..+...++| +|+|+||+|+...+.. .
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~-~ 164 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES-R 164 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH-H
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH-H
Confidence 999999999999999999999999999999999998766 999999999999998 7899999998643211 1
Q ss_pred HHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q 004311 213 LDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGD 292 (762)
Q Consensus 213 ~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e 292 (762)
++.+.+.
T Consensus 165 ~~~i~~~------------------------------------------------------------------------- 171 (458)
T 1f60_A 165 FQEIVKE------------------------------------------------------------------------- 171 (458)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchH------------------------HHHHHHHhcCCCCcc
Q 004311 293 MFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------------------PLLDGVLSYLPCPTE 348 (762)
Q Consensus 293 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------------------~Lld~i~~~lPsP~~ 348 (762)
+.+.+...-.....+|++.+||++|.|+. .|++++. .+|.|.
T Consensus 172 ------------~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~-~~~~p~- 237 (458)
T 1f60_A 172 ------------TSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPS- 237 (458)
T ss_dssp ------------HHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHH-TSCCCC-
T ss_pred ------------HHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhh-ccCCCc-
Confidence 00001100000012678888999999985 4677754 345453
Q ss_pred cccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCccc
Q 004311 349 VSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEME 427 (762)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~ 427 (762)
.+.+.|+.++|..++..++ |+++.|||.+|+++.||+|.+.+.+...+|.+|.. ...
T Consensus 238 ------------------~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~ 295 (458)
T 1f60_A 238 ------------------RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM----HHE 295 (458)
T ss_dssp ------------------CCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE----TTE
T ss_pred ------------------ccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE----CCe
Confidence 3467899999999999987 99999999999999999999999999999999974 245
Q ss_pred ccccccCCCEEEE--ccc---ccccCceeecCCC
Q 004311 428 DIQEAHAGQIVAV--FGV---DCASGDTFTDGSV 456 (762)
Q Consensus 428 ~v~~a~aGdIv~i--~gl---~~~~GdtL~~~~~ 456 (762)
++++|.|||++++ .|+ +++.||+|+..++
T Consensus 296 ~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 296 QLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 8899999999886 476 7889999998764
No 26
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=4.3e-33 Score=331.90 Aligned_cols=273 Identities=24% Similarity=0.312 Sum_probs=201.6
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+...||+++||+|||||||+++|+...... +.. .....+.+|..+.|+++|+|++.....+.++++.++|||||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~---G~a--~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP 367 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKT---YGG--AARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP 367 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHH---SCC-----------------------CCSCEEEECSSCEEEEEECC
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccc---ccc--ccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC
Confidence 3457899999999999999999998642100 000 00002357888999999999999988899999999999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHHHHHHhccceeee
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (762)
||.+|...+.++++.+|++|+|||+++|+..||++++..+...++| +|+|+||+|+... .+.++.+...
T Consensus 368 GHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d--~e~le~i~eE-------- 437 (1289)
T 3avx_A 368 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD--EELLELVEME-------- 437 (1289)
T ss_dssp CHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC--HHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc--hhhHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999999 6899999999641 1111111100
Q ss_pred eecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004311 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (762)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (762)
+.+
T Consensus 438 -----------------------------------------------------------------------------i~e 440 (1289)
T 3avx_A 438 -----------------------------------------------------------------------------VRE 440 (1289)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHHHHhcCcceeeecccccCC--------CchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEE
Q 004311 308 AIRRATVARKFIPVFMGSAFKN--------KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (762)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~--------~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (762)
.+...-.....+|++.+||++| .||++|++.|.+++|.|. .+.++|+.+.|..
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~-------------------r~~d~Pfr~pId~ 501 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE-------------------RAIDKPFLLPIED 501 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC-------------------CGGGSCCEEECCE
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCc-------------------cccccceeeeccc
Confidence 0000000112378999999999 589999999999999875 2457899999999
Q ss_pred EeecCC-ccEEEEEEEeeeecCCCeEEecCCC--eEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccCcee
Q 004311 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTF 451 (762)
Q Consensus 380 ~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL 451 (762)
++.+++ |++++|||++|+|++||+|.+.+.+ ...+|+.|... ..++++|.|||+|++ .|+ ++..||+|
T Consensus 502 Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL 577 (1289)
T 3avx_A 502 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVL 577 (1289)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred cccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEE
Confidence 999987 9999999999999999999998877 67889988632 357999999999885 466 78899999
Q ss_pred ecCCC
Q 004311 452 TDGSV 456 (762)
Q Consensus 452 ~~~~~ 456 (762)
+.++.
T Consensus 578 ~~~~~ 582 (1289)
T 3avx_A 578 AKPGT 582 (1289)
T ss_dssp ESTTS
T ss_pred ecCCC
Confidence 98754
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=319.56 Aligned_cols=287 Identities=19% Similarity=0.225 Sum_probs=219.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceee---------eee-cCCCccccccCChhhhhhhcceeecceEEEeecC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI---------HEV-RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~---------~~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (762)
+...||+++||+|+|||||+++|++..+.+... ... .+...+.+++|....|+++|+|++.....+.+++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 446799999999999999999999887766431 000 1223457789999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhH
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWK 211 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~g-------v~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 211 (762)
+.++|||||||.+|...+..+++.+|++|+|||+.+| ...|+.+++..+...++| +|+|+||+|+...+. .
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~-~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-Q 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH-H
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH-H
Confidence 9999999999999999999999999999999999987 468999999999999987 789999999975321 1
Q ss_pred HHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q 004311 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (762)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (762)
..+++.+.+
T Consensus 324 ~~~ei~~~l----------------------------------------------------------------------- 332 (611)
T 3izq_1 324 RFEEIKSKL----------------------------------------------------------------------- 332 (611)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111111
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHH---------------HHHHHhcCCCCcccccccccc
Q 004311 292 DMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPL---------------LDGVLSYLPCPTEVSNYALDQ 356 (762)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~L---------------ld~i~~~lPsP~~~~~~~~~~ 356 (762)
...+...-.....+|++.+||++|.||+++ ++.+. .++.+.....
T Consensus 333 --------------~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~-~l~~~~p~~~----- 392 (611)
T 3izq_1 333 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLE-NAAFKISKEN----- 392 (611)
T ss_dssp --------------HHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHT-TSCCCCCCSS-----
T ss_pred --------------HHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHH-HHhhcccccC-----
Confidence 000000000112468889999999999753 44443 3321110000
Q ss_pred cCccceeeccCCCCCCeEEEEEEEeecC---C-ccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEee----cCcccc
Q 004311 357 KNNEEKVILSGNPDGPLVALAFKLEEGR---F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMH----SNEMED 428 (762)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~~~V~k~~~d~---~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~----g~~~~~ 428 (762)
.....+.|+.+.|..++..+ + |+++.|||.+|+|++||.|.+.+.+.+.+|++|.... |..+.+
T Consensus 393 --------p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~ 464 (611)
T 3izq_1 393 --------EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEE 464 (611)
T ss_dssp --------SCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCC
T ss_pred --------cccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccc
Confidence 01346789999999998876 4 8999999999999999999999999999999998652 556789
Q ss_pred cccccCCCEEEE--ccc---ccccCceeecCCC
Q 004311 429 IQEAHAGQIVAV--FGV---DCASGDTFTDGSV 456 (762)
Q Consensus 429 v~~a~aGdIv~i--~gl---~~~~GdtL~~~~~ 456 (762)
+++|.|||+|++ .|+ +++.||+|+++++
T Consensus 465 v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 465 TDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 999999999997 554 7899999998765
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=297.89 Aligned_cols=255 Identities=22% Similarity=0.300 Sum_probs=188.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee------------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------ 137 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------ 137 (762)
+...||+++||+|||||||+++|+. ...|..+.|+++|+|+......+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g------------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~ 67 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG------------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTK 67 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS------------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC------------------CccccCcccccCCcEEEeccccccccccccccccccc
Confidence 4568999999999999999999941 1345677888999999876554433
Q ss_pred ---c--------CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHHcCC-CEEEEEeCCCC
Q 004311 138 ---K--------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEV-PRLAFINKLDR 204 (762)
Q Consensus 138 ---~--------~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~~-p~iiviNK~D~ 204 (762)
. .+.++|||||||.+|...+.+++..+|++|+|+|+++|. ..||.+++..+...++ |+++|+||+|+
T Consensus 68 ~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 68 PRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp SBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred ccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence 1 168999999999999999999999999999999999998 8999999998888776 68999999999
Q ss_pred CCCCh-hHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHH
Q 004311 205 MGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELV 283 (762)
Q Consensus 205 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~ 283 (762)
...+. ....+++.+.+
T Consensus 148 ~~~~~~~~~~~~i~~~l--------------------------------------------------------------- 164 (408)
T 1s0u_A 148 VDEKQAEENYEQIKEFV--------------------------------------------------------------- 164 (408)
T ss_dssp SCTTTTTTHHHHHHHHH---------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 65431 11222222211
Q ss_pred hcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCcccee
Q 004311 284 SEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKV 363 (762)
Q Consensus 284 ~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~ 363 (762)
.+. ....+|++.+||++|.||++|+++|.+++|.|.
T Consensus 165 ------------~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~---------------- 200 (408)
T 1s0u_A 165 ------------KGT----------------IAENAPIIPISAHHEANIDVLLKAIQDFIPTPK---------------- 200 (408)
T ss_dssp ------------TTS----------------TTTTCCEEEC------CHHHHHHHHHHHSCCCC----------------
T ss_pred ------------hhc----------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc----------------
Confidence 100 012368888999999999999999999999875
Q ss_pred eccCCCCCCeEEEEEEEeec--------CC-ccEEEEEEEeeeecCCCeEEecCCCe------------EEEcCeEEEee
Q 004311 364 ILSGNPDGPLVALAFKLEEG--------RF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVRMH 422 (762)
Q Consensus 364 ~~~~~~~~p~~~~V~k~~~d--------~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~ 422 (762)
.+.+.|+.++|..++.. ++ |.++.|||++|+|++||.|.+.+.++ ..+|++|+.
T Consensus 201 ---~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~-- 275 (408)
T 1s0u_A 201 ---RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA-- 275 (408)
T ss_dssp ---CCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE--
T ss_pred ---ccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE--
Confidence 35678999999887743 33 78999999999999999999876432 568888874
Q ss_pred cCcccccccccCCCEEEEc-----cc---ccccCceeecCCC
Q 004311 423 SNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSV 456 (762)
Q Consensus 423 g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~ 456 (762)
...++++|.|||.+++. ++ +...|++|+.++.
T Consensus 276 --~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 276 --GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp --TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC
T ss_pred --CCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCC
Confidence 34689999999999983 33 5678999998654
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=2.2e-32 Score=309.67 Aligned_cols=257 Identities=24% Similarity=0.289 Sum_probs=191.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..||+++||+|||||||+++|+.... ...+|..+.|+++|+|++.....+.++++.++|||||||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~--------------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIAS--------------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCc--------------ccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 347899999999999999999963210 335788889999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC-hhHHHHHHHHHhccceeeeee
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~ 229 (762)
.+|...+..+++.+|++|+|+|+.+|+..||.+++..+...++|.++|+||+|+...+ .....+++.+.
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~---------- 153 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSI---------- 153 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999986311 01111111111
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
+
T Consensus 154 -------------------------------------------------------------------------------l 154 (482)
T 1wb1_A 154 -------------------------------------------------------------------------------L 154 (482)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred HHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccE
Q 004311 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQL 388 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l 388 (762)
... ......|++.+||++|.|+++|+++|.+.+|.|.- ..+.++|+.+.|..++..++ |++
T Consensus 155 ~~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~-----------------~~~~~~~~~~~v~~v~~~~g~G~v 216 (482)
T 1wb1_A 155 QST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEI-----------------IRNTESYFKMPLDHAFPIKGAGTV 216 (482)
T ss_dssp HHS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCC-----------------CCCSSSCCBCBCSCEECCSSCCCE
T ss_pred hhh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccc-----------------cccccccccccceeEEEecCCceE
Confidence 000 00013678889999999999999999998875510 13456788888888888777 999
Q ss_pred EEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---ccccCceee
Q 004311 389 TYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTFT 452 (762)
Q Consensus 389 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~ 452 (762)
+.|||.+|++++||.|.+.+.+...+|+.|.. ...++++|.|||.+++ .|+ ++..||+|+
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMSTKVRSIQY----FKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCCEEECCBCG----GGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE----CCeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 99999999999999999998888889998873 3467899999999886 476 578999994
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=1.3e-32 Score=309.66 Aligned_cols=308 Identities=24% Similarity=0.296 Sum_probs=225.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+.++|+++||+|||||||+++|+... +.. ...+|+|++.....+.+++..++|||||||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--------v~~-------------~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--------VAS-------------GEAGGITQHIGAYHVETENGMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--------HSB-------------TTBCCCCCCSSCCCCCTTSSCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--------Ccc-------------ccCCCeeEeEEEEEEEECCEEEEEEECCCc
Confidence 56889999999999999999997532 111 112788988888888889999999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeeec
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 230 (762)
.+|...+.++++.+|++|||+|+++|+..||.++|..+...++|+++++||+|+.++++.+..++ +.
T Consensus 62 e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~----l~--------- 128 (501)
T 1zo1_I 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE----LS--------- 128 (501)
T ss_dssp TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCC----CC---------
T ss_pred HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHH----HH---------
Confidence 99999999999999999999999999999999999999999999999999999976543211100 00
Q ss_pred CCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004311 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (762)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (762)
......+
T Consensus 129 ------------------------------------------------------------------~~~~~~~------- 135 (501)
T 1zo1_I 129 ------------------------------------------------------------------QYGILPE------- 135 (501)
T ss_dssp ------------------------------------------------------------------CCCCCTT-------
T ss_pred ------------------------------------------------------------------HhhhhHH-------
Confidence 0000000
Q ss_pred HHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccEE
Q 004311 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (762)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l~ 389 (762)
..+..+|++++||++|.|+++|+++|......+. ...+++.|+.++|++.+.+++ |.++
T Consensus 136 ---~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~-----------------~~~~~~~~~~~~V~e~~~d~g~G~v~ 195 (501)
T 1zo1_I 136 ---EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE-----------------LKAVRKGMASGAVIESFLDKGRGPVA 195 (501)
T ss_dssp ---CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST-----------------TTSCCCSBCEEEEEEEEECSSSSEEE
T ss_pred ---HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc-----------------cccccccccccceEEEEEeCCcEEEE
Confidence 0112378999999999999999999976422111 013567889999999999997 9999
Q ss_pred EEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-c-cccCceeecCCCcc---------
Q 004311 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFTDGSVKY--------- 458 (762)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~~~~~~~--------- 458 (762)
++||++|++++||.|.+.+. ..++..+.+....++++|.||+.+.+.|+ + ...||+++...+.-
T Consensus 196 ~~~V~~Gtlk~Gd~v~~g~~-----~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r 270 (501)
T 1zo1_I 196 TVLVREGTLHKGDIVLCGFE-----YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYR 270 (501)
T ss_dssp EEEEEESBCCTTCEEEEEBS-----SCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBT
T ss_pred EEEEEeeEEecCCEEEEccc-----eeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHH
Confidence 99999999999999987542 33445555555568999999999999998 4 47899987432210
Q ss_pred ---------------ccccCC--C---CcceeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchh
Q 004311 459 ---------------TMTSMH--V---PEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGEL 518 (762)
Q Consensus 459 ---------------~l~~~~--~---~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~Gel 518 (762)
.+..+. + ..+.+.+.|.+......+.|..+|.+|..++..+.+ +-.|.|.+
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v---------~~~~vG~i 341 (501)
T 1zo1_I 271 QGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI---------IGSGVGGI 341 (501)
T ss_dssp TCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCC---------CCSSSSSS
T ss_pred HHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEE---------EEeccCCC
Confidence 111111 1 233466666666666677777777777665555543 23566666
Q ss_pred H
Q 004311 519 H 519 (762)
Q Consensus 519 H 519 (762)
+
T Consensus 342 ~ 342 (501)
T 1zo1_I 342 T 342 (501)
T ss_dssp H
T ss_pred C
Confidence 5
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=1.7e-30 Score=288.73 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=193.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-----cCeeEEE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQINI 144 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~l 144 (762)
+...||+++||+|||||||+++|+...... ..+... .........+..++++.......+.+ ....++|
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAE-----TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEE-----EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccc-----cceeeccccccccceecccccccccccccccccceEEE
Confidence 345789999999999999999996432111 000000 00111111222344444332222222 2378999
Q ss_pred EeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHHcCC-CEEEEEeCCCCCCCCh-hHHHHHHHHHhc
Q 004311 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEV-PRLAFINKLDRMGADP-WKVLDQARSKLR 221 (762)
Q Consensus 145 iDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~~-p~iiviNK~D~~~~~~-~~~~~~i~~~l~ 221 (762)
||||||.+|...+..+++.+|++|+|+|+.++. ..|+.+++..+...++ |+++|+||+|+...+. ....+++.+.+
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l- 158 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT- 158 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH-
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999998 9999999999988776 7899999999864221 11111111111
Q ss_pred cceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCC
Q 004311 222 HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPIS 301 (762)
Q Consensus 222 ~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~ 301 (762)
.+
T Consensus 159 --------------------------------------------------------------------------~~---- 160 (403)
T 3sjy_A 159 --------------------------------------------------------------------------KG---- 160 (403)
T ss_dssp --------------------------------------------------------------------------TT----
T ss_pred --------------------------------------------------------------------------Hh----
Confidence 00
Q ss_pred hhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEe
Q 004311 302 SGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (762)
Q Consensus 302 ~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (762)
.....+|++.+||++|.|+++|+++|.+++|.|. .+.+.|+.++|.+.+
T Consensus 161 ------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~-------------------~~~~~~~~~~v~~~~ 209 (403)
T 3sjy_A 161 ------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY-------------------RDLSQKPVMLVIRSF 209 (403)
T ss_dssp ------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEE
T ss_pred ------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC-------------------CCCCCCcEEEEEEEE
Confidence 0112368999999999999999999999999875 356789999999876
Q ss_pred e--------cCC-ccEEEEEEEeeeecCCCeEEecCCCe------------EEEcCeEEEeecCcccccccccCCCEEEE
Q 004311 382 E--------GRF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (762)
Q Consensus 382 ~--------d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 440 (762)
. +++ |.+++|||++|++++||+|.+.+.++ ..+|++|.. ...++++|.|||+|++
T Consensus 210 ~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~ 285 (403)
T 3sjy_A 210 DVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAI 285 (403)
T ss_dssp CCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEE
T ss_pred eecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEE
Confidence 4 344 89999999999999999999977553 457888874 4568999999999997
Q ss_pred c-----cc---ccccCceeecCCCc
Q 004311 441 F-----GV---DCASGDTFTDGSVK 457 (762)
Q Consensus 441 ~-----gl---~~~~GdtL~~~~~~ 457 (762)
. ++ +...|++|+.++..
T Consensus 286 ~l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 286 GTYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp EESSCHHHHGGGTTTTCEEEETTCC
T ss_pred EeccccccchhhhccccEEeCCCCC
Confidence 3 44 67789999987643
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=2.1e-31 Score=302.20 Aligned_cols=255 Identities=24% Similarity=0.280 Sum_probs=199.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (762)
+.+.|+++||+|||||||+++|...... ....+|+|.+.....+.+ ++..++||||||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~---------------------~~~~~giT~~i~~~~v~~~~g~~i~~iDTPG 61 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA---------------------AMEAGGITQHIGAFLVSLPSGEKITFLDTPG 61 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH---------------------HSSSCCBCCCTTSCCBCSSCSSCCBCEECSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc---------------------cccCCceeEEEeEEEEEeCCCCEEEEEECCC
Confidence 3456999999999999999999653211 112367788777777776 567899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChhHHHHHHHHHhccceeeeee
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (762)
|.+|...+.++++.+|++|||+|+.+|+..||.++|..+...++|+++|+||+|+.++++....+++... +..
T Consensus 62 he~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~------ 134 (537)
T 3izy_P 62 HAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DVV------ 134 (537)
T ss_dssp SCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TSC------
T ss_pred hHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hhh------
Confidence 9999999999999999999999999999999999999999999999999999999765432222221110 000
Q ss_pred cCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004311 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (762)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (762)
.+
T Consensus 135 -----------------------------------------------------------------~e------------- 136 (537)
T 3izy_P 135 -----------------------------------------------------------------CE------------- 136 (537)
T ss_dssp -----------------------------------------------------------------CC-------------
T ss_pred -----------------------------------------------------------------HH-------------
Confidence 00
Q ss_pred HHHHhcCcceeeecccccCCCchHHHHHHHHhcCCCCcccccccccccCccceeeccCCCCCCeEEEEEEEeecCC-ccE
Q 004311 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQL 388 (762)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~-G~l 388 (762)
.....+|++++||++|.|+++|++++...++.+.. ..+++.|+.+.|++.+.+++ |++
T Consensus 137 ----~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~-----------------~~~~~~~~~~~V~e~~~~~g~G~V 195 (537)
T 3izy_P 137 ----DYGGDVQAVHVSALTGENMMALAEATIALAEMLEL-----------------KADPTGAVEGTVIESFTDKGRGPV 195 (537)
T ss_dssp ----CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC-----------------CCCSSSSEEEEEEEECCCTTCCCC
T ss_pred ----hcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc-----------------cCCCCCCcceeEEEEEEeCCCceE
Confidence 01123689999999999999999999887664321 14577899999999999997 999
Q ss_pred EEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEEccc-c-cccCceeecCCCc
Q 004311 389 TYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFTDGSVK 457 (762)
Q Consensus 389 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~~~~~~ 457 (762)
+.++|.+|+|++||.+... ....+|..|+... ..++++|.||++|+|.|+ + ...||+|+...+.
T Consensus 196 ~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~---g~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 196 TTAIIQRGTLRKGSILVAG--KSWAKVRLMFDEN---GRAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEEEEEECCSSEEEECCS--SCCEEEEEEEECC---CCCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EEEEEecCEEEcCCEEEeC--CceEEEEEEEcCC---CCCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 9999999999999998542 2335666666433 367999999999999999 5 4789999876543
No 33
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=8.1e-22 Score=221.09 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=113.6
Q ss_pred cccCcccccccccccccccccccCCCCcchh--hccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWK--ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (762)
+++.++.+||.|+.+..++.+.+....+... ...+...+|+++|++|+|||||+|+|+.....+ +
T Consensus 137 g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~-----~-------- 203 (436)
T 2hjg_A 137 GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-----V-------- 203 (436)
T ss_dssp SSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE-----E--------
T ss_pred CCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCcee-----e--------
Confidence 4568899999999999998877643332111 123456899999999999999999997543221 1
Q ss_pred ccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC----------cHHH-HHHHHHhcCEEEEEEeCCCCcchhHH
Q 004311 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD----------FTVE-VERALRVLDGAILVLCSVGGVQSQSI 182 (762)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d----------f~~~-~~~al~~aD~aIlVvDa~~gv~~qt~ 182 (762)
+..+|+|++.....+.+++..++||||||+.+ |... ...+++.+|++|+|+|+.++...|+.
T Consensus 204 -------~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~ 276 (436)
T 2hjg_A 204 -------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 (436)
T ss_dssp -------C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred -------cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH
Confidence 11368899888888999999999999999843 3332 34688999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 183 TVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 183 ~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.++..+...++|+++|+||+|+..
T Consensus 277 ~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 277 RIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHcCCcEEEEEECccCCC
Confidence 998888889999999999999864
No 34
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=5.7e-21 Score=215.41 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=116.7
Q ss_pred cccCcccccccccccccccccccCCCCcch--hhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWW--KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (762)
+++.++++||.|+.+..++.+.+....+.. ....+...+|+++|++|+|||||+++|+...... +.
T Consensus 157 g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~-----~~------- 224 (456)
T 4dcu_A 157 GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-----VS------- 224 (456)
T ss_dssp SSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE-----EC-------
T ss_pred CCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccc-----cC-------
Confidence 566789999999999998887664332211 1123457899999999999999999997543221 11
Q ss_pred ccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC----------CcCcHHHH-HHHHHhcCEEEEEEeCCCCcchhHH
Q 004311 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG----------HVDFTVEV-ERALRVLDGAILVLCSVGGVQSQSI 182 (762)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG----------~~df~~~~-~~al~~aD~aIlVvDa~~gv~~qt~ 182 (762)
...|+|.+.....+.+++..++|||||| +..|.... ..+++.+|++|+|+|+.++...++.
T Consensus 225 --------~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~ 296 (456)
T 4dcu_A 225 --------NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 296 (456)
T ss_dssp --------C------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred --------CCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHH
Confidence 1268888888888999999999999999 45565543 4688999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 183 TVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 183 ~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.++..+...++|+++|+||||+..
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHcCCCEEEEEEChhcCC
Confidence 999999999999999999999864
No 35
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=1.3e-19 Score=192.79 Aligned_cols=116 Identities=23% Similarity=0.172 Sum_probs=94.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+|+|++|+|||||+|+|+.....+. .. ..++|.......+.+++.+++||||||+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-----s~---------------~~~tTr~~i~~i~~~~~~~l~l~DTpG~ 65 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-----SP---------------RPQTTRKRLRGILTEGRRQIVFVDTPGL 65 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC-----CS---------------SSCCCCSCEEEEEEETTEEEEEEECCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee-----cC---------------CCCceeEEEEEEEEeCCcEEEEecCccc
Confidence 456899999999999999999985433221 11 1344555555556788999999999999
Q ss_pred cC--------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCCC
Q 004311 151 VD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~d--------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~iiviNK~D~~~ 206 (762)
.+ |...+..+++.+|++|+|+|++++...++..++..+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 87 677788899999999999999999888888888888877 899999999999854
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=4e-19 Score=189.88 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=94.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-CeeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG 149 (762)
.--.|+|+|++|+|||||+|+|+...-.+ +. ...++|.......+.++ +.+++||||||
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i-----~s---------------~~~~tT~~~~~~~~~~~~~~~i~lvDTPG 68 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI-----IS---------------PKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC-----CC---------------SSSCCCCSCEEEEEEETTTEEEEEEECCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc-----cC---------------CCCCceeeEEEEEEecCCCCeEEEEECcC
Confidence 34679999999999999999997543221 11 12567777777778888 99999999999
Q ss_pred CcCcH----------HHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHHcCCCEEEEEeCCCCC
Q 004311 150 HVDFT----------VEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~----------~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.++. ..+..+++.+|++|+|+|+.++...++..+ +..+...++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 97654 667888999999999999999999999988 667777899999999999985
No 37
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=1.3e-19 Score=203.31 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=109.1
Q ss_pred cccCcccccccccccccccccccCCCCcchh----h--ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCC
Q 004311 36 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWK----E--SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD 109 (762)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~ 109 (762)
++++++++||.|+.+..++.+.+....+... . ..+...+|+|+|++|+|||||+|+|+.....+ +.+
T Consensus 138 g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~-----v~~-- 210 (439)
T 1mky_A 138 GFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERAL-----VSP-- 210 (439)
T ss_dssp SSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE-----ECC--
T ss_pred CCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccc-----cCC--
Confidence 4457889999999999988776632211110 0 12345789999999999999999997543211 111
Q ss_pred ccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcHH------------HHHHHHHhcCEEEEEEeCCCCc
Q 004311 110 GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV------------EVERALRVLDGAILVLCSVGGV 177 (762)
Q Consensus 110 ~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~------------~~~~al~~aD~aIlVvDa~~gv 177 (762)
..|+|.+.....+.+++..+.+|||||+..+.. ....+++.+|++++|+|+..+.
T Consensus 211 -------------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~ 277 (439)
T 1mky_A 211 -------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI 277 (439)
T ss_dssp -------------CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC
T ss_pred -------------CCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC
Confidence 167888888888999999999999999854332 2356789999999999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 178 QSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 178 ~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
..+...++..+...++|+++|+||+|+..
T Consensus 278 ~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 278 TRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 88888888888889999999999999853
No 38
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=1.1e-18 Score=166.73 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=88.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
+++|+++|++|+|||||+++|+...... .+...++|.......+.+++..+.+|||||+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV--------------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-------------------------------CCEEEEEEETTEEEEEEECGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee--------------------ccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 4789999999999999999997532111 01124556666666777888999999999998
Q ss_pred C-------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 D-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 d-------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+ +...+..+++.+|++|+|+|+.++.......+...+...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 61 SGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp SSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred CccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 7 45566778899999999999999887777777777777899999999999985
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=2.3e-19 Score=174.75 Aligned_cols=118 Identities=34% Similarity=0.441 Sum_probs=95.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|.+|+|||||+++|+...-.. ....++|.......+.+++..+.+|||||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 64 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE---------------------QEAGGITQHIGAYQVTVNDKKITFLDTPG 64 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC---------------------SSCCSSSTTCCCCEEEETTEEEEESCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc---------------------CCCCceeEeeeEEEEEeCCceEEEEECCC
Confidence 356789999999999999999996432110 01134455555556778889999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (762)
+.+|...+..+++.+|++|+|+|+.++...++...+..+...++|+++|+||+|+...+
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 65 HEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp SSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC
T ss_pred CHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC
Confidence 99998888888899999999999999888888888888888899999999999997543
No 40
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1e-18 Score=177.19 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=89.6
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe-ecCeeEEEEeC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDT 147 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDT 147 (762)
..+..+|+++|++|+|||||+++|+...... .. ....|+|.......+. +++..++||||
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~-------------~~------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 86 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLA-------------FA------SKTPGRTQHINYFSVGPAAEPVAHLVDL 86 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSS-------------CT------TCCCCSCCCEEEEEESCTTSCSEEEEEC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcce-------------ee------cCCCCcccceEEEEecCCCCCcEEEEcC
Confidence 3457889999999999999999996432100 00 1114556665555555 56789999999
Q ss_pred CCCcC----------cHHHHHHHHHh---cCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 148 PGHVD----------FTVEVERALRV---LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~d----------f~~~~~~al~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
||+.+ |...+..+++. +|++|+|+|+.++.......++..+...++|+++|+||+|+..
T Consensus 87 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 87 PGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 99743 34445556655 8889999999999888888888888888999999999999853
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=8.7e-19 Score=186.59 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=89.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+|+||+|+|||||+|+|+.....+ +.+. .++|.......+.+++.++++|||||+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i-----~s~~---------------~~tTr~~~~gi~~~~~~~i~~iDTpG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI-----TSRK---------------AQTTRHRIVGIHTEGAYQAIYVDTPGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE-----CCCC---------------SSCCSSCEEEEEEETTEEEEEESSSSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc-----cCCC---------------CCcceeeEEEEEEECCeeEEEEECcCC
Confidence 34689999999999999999997542111 1111 344555445567788999999999999
Q ss_pred c-Cc--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 151 V-DF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~-df--------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
. ++ ...+..+++.+|++++|+|+.. +..++..+++.+...++|+++++||+|+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 67 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 7 32 2233556788999999999988 888999898888878999999999999864
No 42
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=2.3e-19 Score=198.56 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=91.9
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe-eEEEEeC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDT 147 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDT 147 (762)
....+||+|+|++|+|||||+++|+..... ..+..+|+|++.....+.+.+. .++||||
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~--------------------~~~~~~gtT~d~~~~~~~~~~~~~l~liDT 90 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVS--------------------IVSDYAGTTTDPVYKSMELHPIGPVTLVDT 90 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC---------------------------------CCCCEEEEEETTTEEEEEEEC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCC--------------------ccCCCCCeeeeeEEEEEEECCCCeEEEEEC
Confidence 456799999999999999999999532211 1223478899988888888775 9999999
Q ss_pred CCCcCcHH-------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004311 148 PGHVDFTV-------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (762)
Q Consensus 148 PG~~df~~-------~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (762)
||+.+|.. .+..+++.+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+...+
T Consensus 91 pG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 91 PGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp SSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred cCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 99988743 356788899999999999 788899999999999999999999999997554
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=1.1e-17 Score=160.50 Aligned_cols=110 Identities=19% Similarity=0.121 Sum_probs=82.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|+++|++|+|||||+++|+...-. +. .-|+......+.+++..+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-----------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 57 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-----------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKI 57 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-----------------CC-------CCCSSCCEEEEECSSCEEEEEECCCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-----------------cc-------cCcCceeEEEEEECCEEEEEEEcCCChhh
Confidence 6999999999999999999753210 00 01233334456678899999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
...+..+++.+|++|+|+|+++........ .+..... .++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 999999999999999999998864433322 2333332 37899999999999643
No 44
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.76 E-value=9.5e-19 Score=181.81 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=87.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
+++|+++|++|+|||||+|+|.... .. +.. .+|+|++.....+.+++..+.||||||+.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~---~~---v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~ 59 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN---QR---VGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVY 59 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS---EE---EEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CC---ccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCcc
Confidence 3689999999999999999995331 11 111 16888888888999999999999999998
Q ss_pred CcHH----------HHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 DFTV----------EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~----------~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+|.. ....++ +.+|++|+|+|++. ......++.++.+.++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 60 SLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp SCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred cccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 8864 234445 78999999999987 3455667777788899999999999973
No 45
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.76 E-value=2e-18 Score=170.76 Aligned_cols=128 Identities=22% Similarity=0.125 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceE-EEeecCeeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT-SCAWKDYQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~-~~~~~~~~i~liDTP 148 (762)
+...+|+++|++|+|||||++.|......... . .......+.+...|.+...... .+......++|||||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~-----~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRK-----G----EMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGB-----C----CCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccc-----c----cccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 34578999999999999999766432111100 0 0000000001112222222211 233445789999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH---------cCCCEEEEEeCCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR---------YEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~---------~~~p~iiviNK~D~~~ 206 (762)
|+.+|...+..+++.+|++|+|+|++++...++...+..+.. .++|+++|+||+|+..
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999999998766666655554433 4889999999999854
No 46
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.76 E-value=3.6e-18 Score=169.52 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=85.2
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.....+|+++|++|+|||||+++|+...... .++ ..|+......+.+.+..++|||||
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~---------------~~~-------~~t~~~~~~~~~~~~~~~~i~Dt~ 71 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS---------------KHI-------TATVGYNVETFEKGRVAFTVFDMG 71 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-------------------CC-------CCCSSEEEEEEEETTEEEEEEEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc---------------ccc-------ccccceeEEEEEeCCEEEEEEECC
Confidence 4567899999999999999999995321110 000 112233334466888999999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHHc-----------CCCEEEEEeCCCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRRY-----------EVPRLAFINKLDRMGA 207 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~~-----------~~p~iiviNK~D~~~~ 207 (762)
|+.+|...+..+++.+|++|+|+|++++...... ..+..+... ++|+++|+||+|+...
T Consensus 72 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 72 GAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp CSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999999889999999999999999987654443 333444333 8999999999998643
No 47
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.2e-17 Score=164.44 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|++|+|||||+++|+..... . . ..|+......+.+++..+.+|||||
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~---~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G 69 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--H---T-------------------SPTIGSNVEEIVINNTRFLMWDIGG 69 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--E---E-------------------ECCSCSSCEEEEETTEEEEEEECCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c---C-------------------cCCCccceEEEEECCEEEEEEECCC
Confidence 34578999999999999999999642211 0 0 0122233345567889999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|++++...+... .+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 70 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp ----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9999888889999999999999998875444332 3333333 4789999999999864
No 48
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=2.9e-19 Score=186.26 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=128.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
....+|+|+|++|+|||||+++|+.....+... . ..++|.......+.|+++.++||||||
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----~--------------~~~~t~~~~~~~~~~~~~~i~iiDTpG 80 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----G--------------SQTLTKTCSKSQGSWGNREIVIIDTPD 80 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----T--------------SCCCCCSCEEEEEEETTEEEEEEECCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----C--------------CCceeeeeEEEEEEeCCCEEEEEECcC
Confidence 346799999999999999999998654322110 0 123677777777889999999999999
Q ss_pred CcCcH-----------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc-----CCCEEEEEe-CCCCCCCChhHH
Q 004311 150 HVDFT-----------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-----EVPRLAFIN-KLDRMGADPWKV 212 (762)
Q Consensus 150 ~~df~-----------~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~~p~iiviN-K~D~~~~~~~~~ 212 (762)
+.++. ..+..+++.+|++|+|+|+.. +..++..++..+.+. +.|.++++| |+|+.+.+....
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~ 159 (260)
T 2xtp_A 81 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDY 159 (260)
T ss_dssp GGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHH
Confidence 98763 223346778999999999985 777788888887765 678888888 999986654432
Q ss_pred --------HHHHHHHhccceeee-eecC------CCcCcccceeeccccee-EEeeCCCCCeEEecCCCh--hhHHHHHH
Q 004311 213 --------LDQARSKLRHHCAAV-QVPM------GLEDQFQGLVDLVQLTA-YYFHGSNGEKIVTGEVPA--DMETFVAE 274 (762)
Q Consensus 213 --------~~~i~~~l~~~~~~~-~~pi------~~~~~~~g~idl~~~~~-~~~~~~~g~~~~~~~i~~--~~~~~~~~ 274 (762)
+.++...++....++ .+|+ +...-|.++++++.... ++|+.+ ...++|. .......+
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 234 (260)
T 2xtp_A 160 MHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG-----LYSLIQRSKCGPVGSDE 234 (260)
T ss_dssp HHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH-----HHHHC------------
T ss_pred HHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH-----HHHHHHHHHhhhhhHHH
Confidence 223444444322111 1333 12233445555555544 555321 1223454 44555667
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcC
Q 004311 275 KRRELIELVSEVDDKLGDMFLSD 297 (762)
Q Consensus 275 ~~~~l~e~~~~~dd~l~e~~l~~ 297 (762)
.+..+.+.+++.+++++++|.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ 257 (260)
T 2xtp_A 235 RVKEFKQSLIKYMETQRSYTALA 257 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999754
No 49
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=4.7e-18 Score=164.13 Aligned_cols=114 Identities=20% Similarity=0.072 Sum_probs=84.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|++|+|||||+++|+...-. . ...|+......+.+++..+.+|||||
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------------~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G 60 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-----------------T-------TIPTIGFNVETVTYKNLKFQVWDLGG 60 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-----------------C-------CCCCSSEEEEEEEETTEEEEEEEECC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------C-------cCCcCccceEEEEECCEEEEEEECCC
Confidence 34578999999999999999999643210 0 01123333445677889999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
+.+|...+..+++.+|++|+|+|+.+....... ..+..... .++|+++|+||+|+...
T Consensus 61 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 61 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp CGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 999988888899999999999999887543332 22333322 47899999999998643
No 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.75 E-value=1.4e-17 Score=164.23 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=84.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+...-.. . ...|+......+.+++..+.||||||+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------~---------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--------D---------------MIPTVGFNMRKITKGNVTIKLWDIGGQ 77 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------S---------------CCCCCSEEEEEEEETTEEEEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--------c---------------cCCCCceeEEEEEeCCEEEEEEECCCC
Confidence 45789999999999999999997532110 0 011222223346678899999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 99999899999999999999999876444332 23333332 57999999999998643
No 51
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.2e-17 Score=165.28 Aligned_cols=116 Identities=12% Similarity=0.233 Sum_probs=83.5
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
..+..+|+++|++|+|||||+++|+...... . .....|.|...... .. +..+.+||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~------------------~~~~~~~t~~~~~~--~~-~~~~~l~Dt~ 77 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLA-R------------------TSSKPGKTQTLNFY--II-NDELHFVDVP 77 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------------CCEEEE--EE-TTTEEEEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-c------------------cCCCCCceeeEEEE--EE-CCcEEEEECC
Confidence 3467899999999999999999997432100 0 00113444443322 22 3479999999
Q ss_pred C----------CcCcHHHHHHHHHhc---CEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 149 G----------HVDFTVEVERALRVL---DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G----------~~df~~~~~~al~~a---D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
| +..|...+..+++.+ |++++|+|+.++...+...+++.+...++|+++|+||+|+..
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 78 GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9 455666667777777 999999999999888888888888888999999999999864
No 52
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.75 E-value=2.8e-17 Score=161.31 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+...+|+++|++|+|||||+++|.... ... + ....|.+ ...+.+++..+.+|||||
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~---~---------------~~t~g~~----~~~~~~~~~~l~i~Dt~G 69 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--ISH---I---------------TPTQGFN----IKSVQSQGFKLNVWDIGG 69 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CEE---E---------------EEETTEE----EEEEEETTEEEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CCc---c---------------cCcCCeE----EEEEEECCEEEEEEECCC
Confidence 455789999999999999999994321 100 0 0112322 234566789999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~----~~~~p~iiviNK~D~~~~ 207 (762)
+.+|...+..+++.+|++|+|+|+++........ .+..+. ..++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999999999999999999999998765444332 223222 247899999999999654
No 53
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=1e-17 Score=187.86 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
+.|+|+|++|+|||||+|+|+.....+ +. ...|+|.+.....+.|++..+.||||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~-----v~---------------~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI-----VE---------------DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-----ec---------------CCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 579999999999999999996432211 11 1278999999999999999999999999864
Q ss_pred ---------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 153 ---------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 153 ---------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
+...+..+++.||++|+|+|+..+....+..+...+.+.++|+++|+||+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122 (439)
T ss_dssp SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 3456678899999999999999999888888888888889999999999997
No 54
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.74 E-value=3.5e-18 Score=179.52 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=85.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+|+|+... .. +. ..+|+|+......+.+++..+.||||||+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~---~~---v~---------------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~ 62 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR---QR---VG---------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---EE---EE---------------ECTTSSSEEEEEEEECSSCEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---cc---cC---------------CCCCeeEEEEEEEEEeCCCceEEEECcCCCc
Confidence 589999999999999999995432 11 11 1268888888888999999999999999988
Q ss_pred cHH---------HH-HHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 153 FTV---------EV-ERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 153 f~~---------~~-~~a--l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
|.. .+ ..+ .+.+|++|+|+|+.. ......++.++.+.++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp SCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred cccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 762 11 222 368999999999987 345566667778889999999999997
No 55
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=165.72 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=83.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|+.|+|||||+++|+........ ...|+......+.+++..+.||||||+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN----------------------ILPTIGFSIEKFKSSSLSFTVFDMSGQ 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS----------------------CCCCSSEEEEEEECSSCEEEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------------cCCccceeEEEEEECCEEEEEEECCCC
Confidence 4578999999999999999999533211100 112333444556777899999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH------cCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR------YEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~------~~~p~iiviNK~D~~~ 206 (762)
.+|...+..+++.+|++|+|+|+.+....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 99998888999999999999999886433332 23333333 4789999999999864
No 56
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=2.4e-17 Score=163.48 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|++|+|||||+++|+... .. .. ..|+......+.+++..+++|||||
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~---------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G 82 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IV---------------TT-------IPTIGFNVETVEYKNICFTVWDVGG 82 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CE---------------EE-------EEETTEEEEEEEETTEEEEEEECC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--cc---------------cc-------CCcCceeEEEEEECCEEEEEEECCC
Confidence 345789999999999999999994211 10 00 1133333445677889999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
+.+|...+..+++.+|++|+|+|+.+....+... .+..... .++|+++|+||+|+...
T Consensus 83 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 83 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp ----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999888899999999999999998875444332 2333322 37899999999998643
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=2.5e-17 Score=160.24 Aligned_cols=114 Identities=18% Similarity=0.068 Sum_probs=82.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC---eeEEEEeC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQINIIDT 147 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDT 147 (762)
+..+|+++|++|+|||||+++|+...- ..+..+.++.+.....+.+++ ..+.+|||
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt 63 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF---------------------GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT---------------------THHHHHTTTSSEEEEEEEETTTEEEEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC---------------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEEC
Confidence 446899999999999999999964321 011122333333344555554 78999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH-----cCCC-EEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR-----YEVP-RLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~-----~~~p-~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+++....+....|. .+.. .+.| +++|+||+|+.
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 999999988999999999999999998875544443332 2322 2677 68999999984
No 58
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=1.3e-17 Score=163.53 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+..+|+++|++|+|||||+++|+...- .. . ..|+......+.+++..+.+|||||
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G 74 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV--VH---T-------------------SPTIGSNVEEIVINNTRFLMWDIGG 74 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC--EE---E-------------------ECCSSSSCEEEEETTEEEEEEEESS
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--Cc---c-------------------CCcCceeeEEEEECCEEEEEEECCC
Confidence 3457899999999999999999974321 11 0 0122222345567889999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|+++....+.. ..+..... .++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 999988888899999999999999987544433 33333332 5789999999999864
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-17 Score=165.15 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=86.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|.+|+|||||+++|+...-.. . .....|.+.......+......+.||||||
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH--------N-----------ISPTIGASFMTKTVPCGNELHKFLIWDTAG 81 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT--------T-----------CCCCSSEEEEEEEEECSSSEEEEEEEEECC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC--------C-----------cCCCcceeEEEEEEEeCCEEEEEEEEcCCC
Confidence 456789999999999999999997532110 0 001134455444444555668999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred chhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999999999999999999999998876555444443 3333 278999999999984
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=162.90 Aligned_cols=115 Identities=20% Similarity=0.129 Sum_probs=82.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|+.|+|||||+++|+..... .+..+.++.+.....+.+++ ..+.||||
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt 82 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC---------------------EACKSTVGVDFKIKTVELRGKKIRLQIWDT 82 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-----------------------------CCTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC---------------------cCCCCccceeEEEEEEEECCeEEEEEEEeC
Confidence 44678999999999999999999532110 00112223333333444544 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|++++...+....|. .+.. .++|+++|+||+|+.
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999999999999999999876665554443 2332 378999999999984
No 61
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.74 E-value=3.4e-17 Score=163.60 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=82.1
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEe
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (762)
.+...+|+++|++|+|||||+++|+...-. .+....++.+.....+.+++ ..+.|||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D 84 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFS---------------------ERQGSTIGVDFTMKTLEIQGKRVKLQIWD 84 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CEEEEEEEETTEEEEEEEEC
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCC---------------------CCCCCCcceEEEEEEEEECCEEEEEEEEE
Confidence 455789999999999999999999643210 00111222223334445555 6899999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 999999999999999999999999999876544443333 33333 468999999999984
No 62
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=1.9e-17 Score=159.30 Aligned_cols=115 Identities=16% Similarity=0.047 Sum_probs=82.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|+...-.. . .+...|.+.......+...+..+.+|||||+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE--------F-----------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT--------T-----------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC--------C-----------CCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999997532110 0 01113444444444444456789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 9999999999999999999999887554443333 33333 368889999999974
No 63
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=3.4e-17 Score=161.58 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
....+|+++|+.|+|||||+++|+...... +.. ..|+|..... ...+..+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~---------------~~~~t~~~~~---~~~~~~~~i~Dt~G 77 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-----VSK---------------TPGKTRSINF---YLVNSKYYFVDLPG 77 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-----CCS---------------SCCCCCCEEE---EEETTTEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-----ccC---------------CCCCccCeEE---EEECCcEEEEECCC
Confidence 456789999999999999999997543110 000 1333433322 22355789999999
Q ss_pred ----------CcCcHHHHHHHHHhc---CEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 150 ----------HVDFTVEVERALRVL---DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ----------~~df~~~~~~al~~a---D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
+..|...+..+++.+ |++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 78 YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 444555556666665 999999999998888888888888888999999999999853
No 64
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=164.25 Aligned_cols=116 Identities=19% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+...-.. +..++++.......+.+++ ..+.||||
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 72 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE---------------------SYISTIGVDFKIRTIELDGKTIKLQIWDT 72 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS---------------------CCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC---------------------CCCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 457899999999999999999997532111 0113344444445555655 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+..
T Consensus 73 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp CCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99999999999999999999999999986554443333 33333 2789999999999853
No 65
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=3e-17 Score=159.56 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=84.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-------------------PHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-------------------TTSCCCCEEEEEEEETTEEEEEEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------CCccceEEEEEEEEECCeEEEEEEEECCC
Confidence 45689999999999999999999754321100 00123333333333333457899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+.++...+....|. .+.. .++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp GGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999999999999876555444432 2322 578999999999984
No 66
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=3e-17 Score=160.09 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|++|+|||||+++|+...-.... ....|.+.......+......+.||||||+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-------------------CCCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC-------------------CCCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 4578999999999999999999753211000 001122222222222223468999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHHc---CCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRRY---EVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~~---~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++|+|+|+++....+.... +..+... ++|+++|+||+|+.
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 9999999999999999999999988765444333 3344433 78899999999985
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=162.68 Aligned_cols=116 Identities=19% Similarity=0.125 Sum_probs=86.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEe
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (762)
.+...+|+++|++|+|||||+++|+.... ..+..++++.......+.+++ ..+.+||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF---------------------SGSYITTIGVDFKIRTVEINGEKVKLQIWD 64 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC------------------------CCTTTBSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCC---------------------CCccCCCceeEEEEEEEEECCEEEEEEEEc
Confidence 35678999999999999999999943111 011124445555555666666 7899999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (762)
|||+.+|...+..+++.+|++|+|+|+.++...+....|.. +.. .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 99999998888889999999999999998765555443332 222 258999999999974
No 68
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=163.82 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=80.5
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.++..+|+++|++|+|||||+++|+...-... .....|.+.......+......+.|||||
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 85 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFREN-------------------ISATLGVDFQMKTLIVDGERTVLQLWDTA 85 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------------------CEEEEEEETTEEEEEEEEECT
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCcc-------------------CCCCccceeEEEEEEECCEEEEEEEEECC
Confidence 35568999999999999999999975321100 00112333333333333344789999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.++...+....|.. +.. .++|+++|+||+|+.
T Consensus 86 G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999999999988766555444432 222 379999999999973
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=5.4e-17 Score=157.68 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=81.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
-.+|+++|+.|+|||||+++|+....... ..+.++++.....+.+++ ..+.+|||||
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G 72 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT---------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS---------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC---------------------CCCceeeEEEEEEEEECCeEEEEEEEECCC
Confidence 46899999999999999999974321110 012233333334444544 6899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp SGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 999999999999999999999999876444333333 22222 478999999999974
No 70
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=2.7e-17 Score=158.83 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=78.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+++|+...... ...+|+|+......+.+++..+.+|||||+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYI---------------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSC---------------------C-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeec---------------------cCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 679999999999999999995321100 01246677766677788889999999999988
Q ss_pred cH------HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 153 FT------VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 153 f~------~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
|. .....+++ .+|++++|+|+... ......+..+.+.++|+++|.||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 63 LTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDL 120 (165)
T ss_dssp SSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHH
T ss_pred CCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHh
Confidence 74 22344454 79999999999763 23334455566679999999999997
No 71
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=1.7e-17 Score=174.01 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=89.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
++++|+++|++|+|||||+++|+.. ....+ ..+|+|+......+.+++..+++|||||+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~---~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 60 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL---RQHVG------------------NWPGVTVEKKEGIMEYREKEFLVVDLPGI 60 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT---CEEEE------------------ECTTSSCEEEEEEEEETTEEEEEEECCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC---CcccC------------------CCCCeEEEeeEEEEEECCceEEEEeCCCc
Confidence 3689999999999999999999532 11111 12677888888889999999999999999
Q ss_pred cCcHH------HHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcC-CCEEEEEeCCCC
Q 004311 151 VDFTV------EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDR 204 (762)
Q Consensus 151 ~df~~------~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~-~p~iiviNK~D~ 204 (762)
.+|.. .+..++ ..+|++|+|+|++.+ .+....+.++...+ +|+++|+||+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 61 YSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDL 121 (271)
T ss_dssp SCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHH
T ss_pred cccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhc
Confidence 88765 333444 569999999999885 45667777888888 999999999996
No 72
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=3.5e-17 Score=161.95 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|....-. . ...|+......+.+++..+.+|||||+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~--~----------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA--T----------------------LQPTWHPTSEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC--C----------------------CCCCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--c----------------------cccCCCCCeEEEEECCEEEEEEECCCCH
Confidence 458999999999999999999743210 0 0113333345677788999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
+|...+..+++.+|++|+|+|++++...+.... +..+. ..++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 988878888899999999999998755443332 23332 25799999999999965
No 73
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=2.9e-17 Score=163.87 Aligned_cols=118 Identities=19% Similarity=0.064 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+...+|+++|++|+|||||+++|+...-... . ....|++.......+......+.||||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 66 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA----------------F---VSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC----------------C---CCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------------c---CCccceeEEEEEEEECCeEEEEEEEECCC
Confidence 3467899999999999999999964321100 0 00123344333333333457899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp SGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred chhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999999999999999999999999887554444333 33333 3789999999999853
No 74
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=3.8e-17 Score=157.26 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+++|+...-.... ....|.+.......+......+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK-------------------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC-------------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------CCccceeEEEEEEEECCEEEEEEEEECCCChh
Confidence 57999999999999999999753211000 00123333333333333346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
|...+..+++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 9999999999999999999999875544443332 2322 378999999999984
No 75
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.72 E-value=1.3e-17 Score=163.18 Aligned_cols=116 Identities=19% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+...- ..+..++++.+.....+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF---------------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64 (183)
T ss_dssp SEEEEEEEECCCCC-------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC---------------------CCCCCCcccceeEEEEEEECCEEEEEEEEcC
Confidence 4568999999999999999999963211 011123344444444555555 78999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99999988888889999999999999886544443333 33333 3789999999999853
No 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=1.8e-17 Score=162.79 Aligned_cols=114 Identities=21% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|++|+|||||+++|+... .. ++ ..|+......+.+++..+++|||||
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~---------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G 71 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD---------------TI-------SPTLGFNIKTLEHRGFKLNIWDVGG 71 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS---------------SC-------CCCSSEEEEEEEETTEEEEEEEECC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC---------------cc-------cccCccceEEEEECCEEEEEEECCC
Confidence 356789999999999999999996422 10 00 0122233345666889999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
+.+|...+..+++.+|++|+|+|+++....+.. ..+..... .++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 72 QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp SHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 999888888889999999999999887544432 23333333 47899999999998643
No 77
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=1.3e-17 Score=173.43 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=86.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|.... ... . ..+|+|+......+.+++..+.||||||+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~---~~~---~---------------~~pg~tv~~~~~~~~~~~~~~~l~DtpG~ 62 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK---QYV---A---------------NWPGVTVEKKEGVFTYKGYTINLIDLPGT 62 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC---EEE---E---------------ECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---Ccc---c---------------CCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 34689999999999999999995321 111 1 11588988888888898999999999999
Q ss_pred cCcHH------HHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 151 VDFTV------EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 151 ~df~~------~~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
.+|.. .....+ ..+|++|+|+|++.. ......+.++.+.++|+++|+||+|+
T Consensus 63 ~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 63 YSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp SSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 87753 123344 479999999999874 33445667777889999999999996
No 78
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=1.5e-17 Score=164.07 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+...+|+++|++|+|||||+++|+........ ....|++.......+......+.||||||
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 80 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF-------------------VSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-------------------CCCCCCEEEEEEEEETTEEEEEEEEECCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCc-------------------CCceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 45689999999999999999999753211100 01124444433334444457899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999988888899999999999999876544443333 34444 378999999999984
No 79
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=1.8e-16 Score=151.98 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=75.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|++|+|||||+++|+...-.. . + .+++.......+.+++ ..+.||||||
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~---------~------~~t~~~~~~~~~~~~~~~~~~~l~D~~G 61 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE-------D---------Y------EPTKADSYRKKVVLDGEEVQIDILDTAG 61 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-------C---------C------CTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC-------C---------C------CCCcceEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997532110 0 0 0011111112233333 6899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred cchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 999999999999999999999999876544433322 22222 379999999999984
No 80
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=161.28 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=84.7
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+...+|+++|++|+|||||+++|+........ ....|.+.......+...+..+.|||||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS-------------------RTTIGVEFSTRTVMLGTAAVKAQIWDTA 82 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC-------------------CCCSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-------------------CCccceeEEEEEEEECCEEEEEEEEeCC
Confidence 456689999999999999999999754321100 0012333333333334455789999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+.
T Consensus 83 G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp CCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 9999998899999999999999999886554433333 33332 378999999999984
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=9.8e-17 Score=157.48 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=76.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|++|+|||||+++|+....... . .+++.......+.+++ ..+.||||||
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------~---------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDE-------Y---------------DPTIEDSYRKQVVIDGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCC-------C---------------CTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCC-------C---------------CCCchheEEEEEEECCcEEEEEEEECCC
Confidence 35799999999999999999975321110 0 1111112222233444 5688899999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH----cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++++|+|+.+....+....|. .+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 9999999999999999999999998865444433332 2222 378999999999985
No 82
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.8e-17 Score=161.58 Aligned_cols=118 Identities=18% Similarity=0.086 Sum_probs=87.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
.+...+|+++|++|+|||||+++|+...-..... ...|++.......+...+..+.|||||
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 80 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV-------------------STVGIDFKVKTVYRHEKRVKLQIWDTA 80 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE-------------------EEETTTEEEEEEEETTTTEEEEEECHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC-------------------CCeeeEEEEEEEEECCEEEEEEEEeCC
Confidence 3456789999999999999999997643211100 012344444444555567899999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 81 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999876544433333 33333 478999999999984
No 83
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=5.2e-17 Score=156.45 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|+...-... .....|.+.......+......+.+|||||+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN-------------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC-------------------CCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 46899999999999999999975321100 01113444444433343345789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred hhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 9998889999999999999999887655554433 33433 367789999999984
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=4.3e-17 Score=162.48 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=77.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|.... . .. ...|+......+.+++..+++|||||+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~--~---------------~~-------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDR--L---------------GQ-------HVPTLHPTSEELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSCEEEEETTEEEEEEEECC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--C---------------Cc-------cCCCCCceeEEEEECCEEEEEEECCCcH
Confidence 4579999999999999999994211 0 00 0113333345677888999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
+|...+..+++.+|++|+|+|+++....+.... +..+. ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp --CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 988888888999999999999988754443332 23332 24799999999999965
No 85
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=7.2e-17 Score=157.28 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+........ ..+.++.......+..++ ..+.+|||
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~~~Dt 67 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT--------------------FISTVGIDFRNKVLDVDGVKVKLQMWDT 67 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC--------------------CCCCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC--------------------cCCceeeEEEEEEEEECCEEEEEEEEeC
Confidence 44578999999999999999999754321100 012223333333334444 58999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+.++...+....| ..+.. .++|+++|+||+|+..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999998899999999999999999887554443333 33333 5789999999999853
No 86
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=4.4e-17 Score=158.63 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+++|....... ..+ ..|+|.+.....+.+++..+.+|||||+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~--------------~~~------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI--------------VTD------IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC--------------CCS------STTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce--------------eeC------CCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 469999999999999999996432111 001 145666666667778888999999999976
Q ss_pred cHHH--------HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc---CCCEEEEEeCCCCC
Q 004311 153 FTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY---EVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~--------~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~~p~iiviNK~D~~ 205 (762)
+... ...+++.+|++|+|+|+++....+....+..+... ++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 65 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 4211 23468999999999999887766655555555443 68999999999973
No 87
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.71 E-value=3.5e-17 Score=157.64 Aligned_cols=114 Identities=20% Similarity=0.100 Sum_probs=80.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
...+|+++|++|+|||||+++|+...-.. +..++++.......+.+++ ..+.|||||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 60 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP---------------------SFITTIGIDFKIKTVDINGKKVKLQIWDTA 60 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC----------------------------CCEEEEEEESSSCEEEEEEECCT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEeCC
Confidence 34689999999999999999997532110 0112223333333444444 689999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 61 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp TGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 9999988889999999999999999876554443333 33333 378999999999983
No 88
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=3.9e-17 Score=160.22 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=84.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
++..+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.||||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 66 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD---------------------SNHTIGVEFGSKIINVGGKYVKLQIWDT 66 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT---------------------CCCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC---------------------CCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 4568999999999999999999975322110 012233333333444554 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---HcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999999999999999999876555444442 222 3578999999999984
No 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=5.6e-17 Score=159.76 Aligned_cols=116 Identities=15% Similarity=0.015 Sum_probs=81.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (762)
+...+|+++|++|+|||||+++|+...-.... . ...|.+... ...+.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~-------------~t~~~~~~~-~~~~~~~~~~~~~~~~~~ 68 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF------I-------------TTVGIDFRE-KRVVYRANGPDGAVGRGQ 68 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC------C-------------CCCSEEEEE-EEEEECTTSCCCSSCCCE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc------c-------------cccceeeee-EEEEEecCCcccccccCc
Confidence 45679999999999999999999753211000 0 001111110 1122222
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
...+.||||||+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 36899999999999999999999999999999999887655553333 33332 578999999999984
No 90
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4.8e-17 Score=162.70 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=83.2
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEe
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (762)
.+...+|+++|.+|+|||||+++|+...-. .. ....++.+.....+.+++ ..++|||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~--------~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~D 81 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFP--------PG-------------QGATIGVDFMIKTVEINGEKVKLQIWD 81 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCC--------TT-------------CCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCC--------CC-------------CCCccceeEEEEEEEECCEEEEEEEEE
Confidence 355789999999999999999999753211 00 012222333333445555 5899999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
|||+.+|...+..+++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999998865544433332 2322 368899999999984
No 91
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=8.7e-18 Score=188.31 Aligned_cols=113 Identities=27% Similarity=0.357 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc-
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 151 (762)
++|+|+|++|+|||||+|+|+.....+ + +...|+|++.....+.|++..+.||||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~--------------v------~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI--------------V------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------------------------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--------------e------cCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 579999999999999999995321111 1 1237889998888899999999999999996
Q ss_pred -------CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 -------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 -------df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.|...+..+++.+|++|+|+|+..+....+..+++.+...++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 64 GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp ---CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 566777889999999999999999999988888888888899999999999985
No 92
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=3e-16 Score=156.46 Aligned_cols=114 Identities=22% Similarity=0.184 Sum_probs=80.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
.+..+|+++|++|+|||||+++|+...-.. ++ .+++.......+.+++ ..+.||||
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~------~~t~~~~~~~~~~~~~~~~~~~l~Dt 69 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVE----------------DY------EPTKADSYRKKVVLDGEEVQIDILDT 69 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCT----------------TC------CTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCC----------------CC------CCccceEEEEEEEECCEEEEEEEEcC
Confidence 456899999999999999999997532100 00 0111111122334444 58999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999999999876544443333 22222 379999999999984
No 93
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=1.1e-16 Score=155.54 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=82.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
...+|+++|++|+|||||+++|+...-.. +..+.++.......+.+++ ..+.|||||
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 64 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT---------------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-------------------------CCSEEEEEEEEEETTEEEEEEEEECC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCceeeeEEEEEEEECCEEEEEEEEeCC
Confidence 45789999999999999999997532110 0112223333334445555 589999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH-------cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR-------YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~-------~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+.
T Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp CCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999999999999999999999998765544443322 221 578999999999985
No 94
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=7.4e-17 Score=159.46 Aligned_cols=115 Identities=19% Similarity=0.107 Sum_probs=81.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
....+|+++|+.|+|||||+++|+........ ....|.+.. ...+.+++ ..+.||||
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~t~~~~~~--~~~~~~~~~~~~~~i~Dt 77 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------DLTIGVEFG--ARMVNIDGKQIKLQIWDT 77 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCSSEE--EEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-------------------CCcccceeE--EEEEEECCEEEEEEEEEC
Confidence 44678999999999999999999753221100 001122222 22334444 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 78 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 99999988889999999999999999886554443333 33333 378999999999984
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=1.6e-17 Score=163.70 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=82.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+.. ... .. ..|+......+.+++..+++|||||+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~--~~~---------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~ 76 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG--DVV---------------TT-------VPTVGVNLETLQYKNISFEVWDLGGQ 76 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS--CCE---------------EE-------CSSTTCCEEEEEETTEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC--CCC---------------Cc-------CCCCceEEEEEEECCEEEEEEECCCC
Confidence 4578999999999999999999421 110 00 01222333456677899999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
.+|...+..+++.+|++|+|+|+++....+.. ..+..... .++|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 99887777888999999999999877543332 22333332 37899999999999643
No 96
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=4.2e-17 Score=163.74 Aligned_cols=115 Identities=19% Similarity=0.106 Sum_probs=82.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+...-.. +...+++.......+.+++ ..+.||||
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 76 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP---------------------SFITTIGIDFKIKTVDINGKKVKLQLWDT 76 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC---------------------SSSCCCSCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc---------------------ccCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 456789999999999999999997432110 0112333334444555666 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999988889999999999999999876544443333 33333 278999999999983
No 97
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=3e-16 Score=153.54 Aligned_cols=113 Identities=21% Similarity=0.180 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
+..+|+++|++|+|||||+++|+...-.. . + ..++.......+.+++ +.+.|||||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------~---------~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVE-------D---------Y------EPTKADSYRKKVVLDGEEVQIDILDTA 74 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCC-------S---------C------CTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC-------c---------C------CCccceEEEEEEEECCEEEEEEEEECC
Confidence 45789999999999999999997532100 0 0 0111111122233444 589999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999876543333322 22222 379999999999984
No 98
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=2.9e-17 Score=172.00 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=83.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|..... ...++ +|+|+......+.+ +..+.+|||||+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~---------------~v~~~------pg~tv~~~~~~~~~-~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ---------------RVGNW------PGVTVERKSGLVKK-NKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC---------------CCCSS------SCCCCSCEEEECTT-CTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC---------------cccCC------CCCcEEEEEEEEec-CCeEEEEECCCcC
Confidence 46899999999999999999953210 01111 57888777777777 8899999999998
Q ss_pred CcH------HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 152 DFT------VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 152 df~------~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
+|. .....+++ .+|++|+|+|++.. ......+.++.+.++|+++|+||+|+
T Consensus 61 ~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 61 SMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDV 119 (272)
T ss_dssp CSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHH
T ss_pred ccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhh
Confidence 885 33455565 59999999999873 33444556677789999999999996
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=1.3e-17 Score=163.10 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
++..+|+++|++|+|||||+++|+... ... ...|+......+.+++..+.+|||||
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G 71 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE--VVT----------------------TKPTIGFNVETLSYKNLKLNVWDLGG 71 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--EEE----------------------ECSSTTCCEEEEEETTEEEEEEEEC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--cCc----------------------cCCcCccceEEEEECCEEEEEEECCC
Confidence 456789999999999999999994211 100 01122233345667789999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~----~~~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|+.+....+... .+.... ..++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp ---CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 9999888888899999999999998775444332 233333 25789999999999864
No 100
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=1.5e-16 Score=152.74 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+++|+...-.. . +.+ ..+... .....+......+.+|||||+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE--------K--------YDP---TIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC--------S--------CCC---CSEEEE-EEEEESSSCEEEEEEEEECSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------C--------CCC---CccceE-EEEEEECCEEEEEEEEECCChHH
Confidence 579999999999999999997532110 0 000 011111 11112223356899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~~p~iiviNK~D~~ 205 (762)
|...+..+++.+|++++|+|+.+....+... .+..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9999999999999999999998754333322 2222322 489999999999984
No 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.2e-16 Score=152.22 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=77.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+++|++|+|||||+++|+...-.... . . ..+.+.. ...........+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~------~---~----------t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESY------I---P----------TVEDTYR-QVISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSC------C---C----------CSCEEEE-EEEEETTEEEEEEEEECCSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC------C---C----------CccccEE-EEEEECCEEEEEEEEECCCchh
Confidence 57999999999999999999742211000 0 0 0111111 1112223346799999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
|...+..+++.+|++|+|+|+.+...... ...+..+.+ .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 99999999999999999999987643332 333444433 379999999999974
No 102
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=2.3e-16 Score=151.13 Aligned_cols=111 Identities=21% Similarity=0.132 Sum_probs=77.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (762)
.+|+++|++|+|||||+++|+...-... + ...+.......+..+ ...+.||||||+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEK----------------Y------DPTIEDFYRKEIEVDSSPSVLEILDTAGT 61 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC----------------C------CTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCccc----------------C------CCCcceeEEEEEEECCEEEEEEEEECCCc
Confidence 5799999999999999999975321100 0 000101112223333 356999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~----~~~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++++|+|+.+....+... .+..+. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 999999999999999999999998764433322 222222 2479999999999974
No 103
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=8.7e-17 Score=156.67 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=72.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---CeeEEEEe
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIID 146 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liD 146 (762)
+...+|+++|++|+|||||+++|+...-.. +..+.++.+.....+.++ ...+.+||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 64 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ---------------------QYKATIGADFLTKEVTVDGDKVATMQVWD 64 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT---------------------TC---CCCSCEEEEECCSSSCCEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc---------------------ccCCccceEEEEEEEEEcCCcEEEEEEEE
Confidence 457899999999999999999997532110 001222222233334443 46899999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH-------cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR-------YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~-------~~~p~iiviNK~D~~ 205 (762)
|||+.+|...+..+++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 9999999988888999999999999998876555444442 2222 578999999999984
No 104
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=5.3e-17 Score=156.04 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=79.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 148 (762)
+..+|+++|++|+|||||+++|+...-.. . ....++.+.....+.++ ...+.+||||
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--------D-------------YKKTIGVDFLERQIQVNDEDVRLMLWDTA 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--------C-------------SSCCCSSSEEEEEEEETTEEEEEEEECCT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--------C-------------CCCceEEEEEEEEEEECCEEEEEEEEcCC
Confidence 45789999999999999999997532100 0 00111222222333333 4689999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH--cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~--~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 9999988888999999999999999886544433333 22322 489999999999984
No 105
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=1.3e-16 Score=158.34 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=53.7
Q ss_pred eeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH-HcCCCEEEEEeCCCC
Q 004311 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR-RYEVPRLAFINKLDR 204 (762)
Q Consensus 140 ~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~-~~~~p~iiviNK~D~ 204 (762)
..+.||||||+.+|...+..+++.+|++|+|+|+.++...+....| ..+. ..++|+++|+||+|.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 7899999999999999999999999999999999987655554433 2333 356899999999993
No 106
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=162.29 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=80.2
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEe
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (762)
.+...+|+++|++|+|||||+++|+...... +..+.++.......+.+++ ..+.|||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D 80 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ---------------------DSNHTIGVEFGSRVVNVGGKTVKLQIWD 80 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC---------------------------------CCEEEEEEEETTEEEEEEEEC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc---------------------cCCCcccceeEEEEEEECCeeeEEEEEc
Confidence 3456899999999999999999996422110 0112222222233344444 7899999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (762)
|||+.+|...+..+++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+.
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 9999888877888999999999999999876555444332 2322 378999999999984
No 107
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.70 E-value=2.3e-16 Score=153.48 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
.+..+|+++|++|+|||||+++|+...-.. ++ .+++.......+.+++ ..+.||||
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~------~~t~~~~~~~~~~~~~~~~~~~~~Dt 64 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS----------------DY------DPTIEDSYTKICSVDGIPARLDILDT 64 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS----------------SC------CTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc----------------cc------CCCcCceEEEEEEECCEEEEEEEEEC
Confidence 456899999999999999999997542110 00 0111111112344444 57899999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHH----HHcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQM----RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~----~~~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.+......... +..+ ...++|+++|+||+|+.
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 65 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999998888999999999999999987644333222 2222 23578999999999984
No 108
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.70 E-value=4.5e-16 Score=148.71 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=77.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (762)
.+|+++|+.|+|||||+++|+....... . ...+.......+..+ .+.+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~---------------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 61 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-------C---------------DPTIEDSYRKQVVIDGETCLLDILDTAGQ 61 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-------C---------------CTTCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-------c---------------CCccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4799999999999999999975321100 0 000111111222333 367899999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~~ 206 (762)
.+|...+..+++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999999999999999999876443333322 33332 2799999999999853
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.70 E-value=3.2e-16 Score=157.67 Aligned_cols=126 Identities=22% Similarity=0.178 Sum_probs=84.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec---CeeEEEEeC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDT 147 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDT 147 (762)
+..+|+++|++|+|||||+++|+...-.. ...|+......+.++ +..++||||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt 61 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD------------------------TQTSITDSSAIYKVNNNRGNSLTLIDL 61 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC------------------------BCCCCSCEEEEEECSSTTCCEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc------------------------ccCCcceeeEEEEecCCCccEEEEEEC
Confidence 45789999999999999999997543110 001111122224555 578999999
Q ss_pred CCCcCcHH-HHHHHHHhcCEEEEEEeCCCCcchhH---HHHHHHHH------HcCCCEEEEEeCCCCCCCC-hhHHHHHH
Q 004311 148 PGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQS---ITVDRQMR------RYEVPRLAFINKLDRMGAD-PWKVLDQA 216 (762)
Q Consensus 148 PG~~df~~-~~~~al~~aD~aIlVvDa~~gv~~qt---~~~~~~~~------~~~~p~iiviNK~D~~~~~-~~~~~~~i 216 (762)
||+.+|.. .+..+++.+|++|+|+|+... ..+. ...|.... ..++|+++|+||+|+.... .....+.+
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 62 PGHESLRFQLLDRFKSSARAVVFVVDSAAF-QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp CCCHHHHHHHHHHHGGGEEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhCCEEEEEEECCCc-CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 99999988 567788999999999999862 2222 22233221 2368999999999997653 44445555
Q ss_pred HHHhc
Q 004311 217 RSKLR 221 (762)
Q Consensus 217 ~~~l~ 221 (762)
.+.++
T Consensus 141 ~~~l~ 145 (214)
T 2fh5_B 141 EKELN 145 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 110
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.70 E-value=4.2e-17 Score=162.99 Aligned_cols=115 Identities=18% Similarity=0.097 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+....... ....++.+.....+.++ ...+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------------------YKATIGADFLTKEVMVDDRLVTMQIWDT 64 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS---------------------CCCCCSEEEEEEEEESSSCEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC---------------------CCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 4568999999999999999999975432110 01222222223333333 368999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHH-------cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR-------YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~-------~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.++...+....|.. +.. .++|+++|+||+|+.
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999988888888999999999999988765554444432 211 478999999999985
No 111
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=1.1e-17 Score=169.60 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=89.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
....+|+++|++|+|||||+++|+...-... . ....|+|.......+...+..++||||||
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~----~---------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 73 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK----Y---------------VATLGVEVHPLVFHTNRGPIKFNVWDTAG 73 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCE----E---------------ETTTTEEEEEEEEEETTEEEEEEEEEECS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC----C---------------CCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 4557899999999999999999653321100 0 11246666666666666678999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc---CCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY---EVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|+++....+....|...... ++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp GGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred hHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 999988888999999999999999987666655555433322 899999999999853
No 112
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=4.1e-17 Score=164.67 Aligned_cols=115 Identities=15% Similarity=0.036 Sum_probs=80.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec-----------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (762)
++..+|+++|++|+|||||+++|+...-... ....++.+.....+.++
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK---------------------FITTVGIDFREKRVVYNAQGPNGSSGKA 81 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE---------------------EEEEEEEEEEEEEEEEEC-------CCE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC---------------------CCCceeEEEEEEEEEECCccccccccCc
Confidence 4568899999999999999999964221100 00111111112222222
Q ss_pred -CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 139 -DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 139 -~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
...++||||||+.+|...+..+++.+|++|+|+|+.+....+....|..... .++|+++|+||+|+.
T Consensus 82 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 5689999999999999999999999999999999988655554443332221 468999999999984
No 113
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.7e-17 Score=160.14 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=83.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+...-... .....|.+.......+......+.||||||+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE-------------------LAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc-------------------CCCccceEEEEEEEEECCeEEEEEEEeCCCc
Confidence 346899999999999999999975321100 0011233443333344444578999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 99998899999999999999999887555444444 33332 368899999999984
No 114
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=8.3e-17 Score=161.01 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+...-.. +..+.++.......+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN---------------------DYISTIGVDFKIKTVELDGKTVKLQIWDT 64 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT---------------------TCCCSSCCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCcccceeEEEEEEECCEEEEEEEEeC
Confidence 456799999999999999999997532110 0012223333333444544 58999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999999888888999999999999999876555544443 3332 3689999999999853
No 115
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=153.62 Aligned_cols=116 Identities=19% Similarity=0.107 Sum_probs=72.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|++|+|||||+++|+....... ....|.+.......+......+.+|||||+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 62 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL--------------------HEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------------------------CCCSSSSEEEEEEEETTEEEEEEEECCC--
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc--------------------cCccccceeEEEEEECCEEEEEEEEecCCC
Confidence 356899999999999999999963211100 001344443333333223357899999999
Q ss_pred cC--cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHHc----CCCEEEEEeCCCCCC
Q 004311 151 VD--FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY----EVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~d--f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~----~~p~iiviNK~D~~~ 206 (762)
.. +.......++.+|++|+|+|+++....+....| ..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred CccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 88 445556667889999999999876544443333 334443 799999999999853
No 116
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=3.3e-17 Score=184.39 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+|+|++|+|||||+|+|+.....+ + ....|+|.+.....+.++++.++||||||+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v------s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAI--------------V------SHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--------------------------------------CEEEEETTEEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------c------CCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 469999999999999999996432211 1 11267888888888899999999999999988
Q ss_pred cHHHHH--------HHHHhcCEEEEEEeCCCCcch----hHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004311 153 FTVEVE--------RALRVLDGAILVLCSVGGVQS----QSITVDRQMRRYEVPRLAFINKLDRMGA 207 (762)
Q Consensus 153 f~~~~~--------~al~~aD~aIlVvDa~~gv~~----qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (762)
+...+. .+++.+|++|+|+|++++... ....++..+. ++|+++|+||+|+...
T Consensus 294 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 294 AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp --------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 765443 256889999999999998776 3333333332 7899999999998643
No 117
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=2.9e-16 Score=153.63 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=78.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
+..+|+++|++|+|||||+++|+...-.. ++.+ ..+... ...+..++ ..+.+||||
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------------~~~~---t~~~~~---~~~~~~~~~~~~l~i~Dt~ 74 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVD----------------DYDP---TIEDSY---LKHTEIDNQWAILDVLDTA 74 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CCCT---TCCEEE---EEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCC---Ccccee---EEEEEeCCcEEEEEEEECC
Confidence 45789999999999999999997431110 0000 011111 22233344 457779999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHHcCCCEEEEEeCCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-----RQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-----~~~~~~~~p~iiviNK~D~~~ 206 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....| ......++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp SCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9999998899999999999999999986444433322 222236789999999999853
No 118
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1.9e-16 Score=152.64 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=69.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 149 (762)
+.+|+++|++|+|||||+++|+........ ....+.+.....+.++ ...+.+|||||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 60 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH---------------------EMENSEDTYERRIMVDKEEVTLIVYDIWE 60 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------------------------CEEEEEEEETTEEEEEEEECCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc---------------------cCCCcCCeeeEEEEECCeEEEEEEEECCC
Confidence 468999999999999999999632221100 0111222222233333 46788999999
Q ss_pred CcCcHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHH----cCCCEEEEEeCCCCC
Q 004311 150 HVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~-~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~----~~~p~iiviNK~D~~ 205 (762)
+.+|.. ....+++.+|++|+|+|+++....+.... +..+.. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp C--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 999876 45667889999999999988544433332 233333 279999999999984
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=9.3e-17 Score=157.87 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=83.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+.... . + +...|+|++.....+.+++..+++|||||+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~---~---~---------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 64 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV---Y---I---------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE---E---E---------------EECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc---c---c---------------cCCCCeeccceEEEEEeCCcEEEEEECCCc
Confidence 347899999999999999999964210 0 0 112466777777778888999999999999
Q ss_pred cCcH------HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 151 VDFT------VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 151 ~df~------~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
.+|. .....+++ .+|++++|+|+.. .......+..+...++|+++|+||+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (188)
T 2wjg_A 65 YSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDL 124 (188)
T ss_dssp SCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhc
Confidence 9884 23344554 4999999999975 233444556666678999999999997
No 120
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.2e-16 Score=158.26 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=81.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
...+|+++|+.|+|||||+++|+...-.. . + ..++.......+.+++ ..+.|||||
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--------~--------~------~~t~~~~~~~~~~~~~~~~~~~i~D~~ 74 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPE--------E--------Y------VPTVFDHYAVSVTVGGKQYLLGLYDTA 74 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCC--------S--------C------CCSSCCCEEEEEESSSCEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------C------CCcccceeEEEEEECCEEEEEEEEECC
Confidence 45789999999999999999997542110 0 0 0001011112233443 789999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH--HHHHHHHc--CCCEEEEEeCCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT--VDRQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~~p~iiviNK~D~~~ 206 (762)
|+.+|...+..+++.+|++|+|+|+++....+... .+..+... ++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp CSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred CCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999888888899999999999998875544432 33444444 899999999999864
No 121
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=1.4e-16 Score=157.10 Aligned_cols=115 Identities=21% Similarity=0.206 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
++..+|+++|++|+|||||+++|+...-... ....++.+.....+.+++ ..+.||||
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 76 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR---------------------TEATIGVDFRERAVDIDGERIKIQLWDT 76 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS---------------------CCCCCSCCEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC---------------------CCCCcceEEEEEEEEECCEEEEEEEEEC
Confidence 4568999999999999999999975321100 011222222223344444 68999999
Q ss_pred CCCcCcH-HHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH----HcCCCEEEEEeCCCCC
Q 004311 148 PGHVDFT-VEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~-~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~~p~iiviNK~D~~ 205 (762)
||+.+|. ..+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999988 6778889999999999999876544443333 2222 2478999999999984
No 122
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=4e-16 Score=153.68 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (762)
.+|+++|..|+|||||+++|+....... + .+++.......+.+++ +.+.||||||+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDE----------------Y------DPTIEDSYRKQVVIDGETCLLDILDTAGQ 79 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSC----------------C------CTTCCEEEEEEEEETTEEEEEEEEECCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccc----------------c------CCccceEEEEEEEECCEEEEEEEEECCCh
Confidence 5899999999999999999975321100 0 0111111112333444 56999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH----cCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~~p~iiviNK~D~~~ 206 (762)
.+|...+..+++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999999999999999999999998875544443332 2222 3799999999999853
No 123
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.68 E-value=6.4e-17 Score=155.92 Aligned_cols=114 Identities=19% Similarity=0.046 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 148 (762)
...+|+++|++|+|||||+++|+...-.. . ....++.......+.++ ...+.+||||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 63 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND--------K-------------HITTLGASFLTKKLNIGGKRVNLAIWDTA 63 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS--------S-------------CCCCCSCEEEEEEEESSSCEEEEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc--------C-------------CCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 34689999999999999999997532110 0 00111222222233333 3578999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---HcCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp CC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 99999888888899999999999998865544443332 222 2578999999999984
No 124
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.2e-16 Score=182.22 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+..+|+++|.+|+|||||+++|+...... ...|+......+.+++..+.||||||
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------------------------~~~T~~~~~~~~~~~~~~~~l~Dt~G 375 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------TIPTVGFNVETVTYKNVKFNVWDVGG 375 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------CCCCSSEEEEEEESSSCEEEEEEECC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC------------------------cCCccceeEEEEEeCCEEEEEEECCC
Confidence 345789999999999999999997543110 01144455566778899999999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~~~ 207 (762)
+.+|...+..+++.+|++|+|+|+++....+....| ..... .++|+|+|+||+|+...
T Consensus 376 ~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 376 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp CGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred cHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 999998889999999999999999987555444332 33322 47999999999998643
No 125
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=6.6e-16 Score=157.38 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|.+|+|||||+++|+...- . +.. ..++|.......+.+++..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~--~----~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV--D----VQS---------------YSFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE--E----EEC---------------C-----CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--c----cCC---------------CCCcceeeeeeeeecCCCeEEEEECCCC
Confidence 457899999999999999999954211 0 000 1344555555666778899999999999
Q ss_pred c------Cc---HHHHHHHHHhcCEEEEEEeCCCCcchh---HHHHHHHHHHc--CCCEEEEEeCCCCCC
Q 004311 151 V------DF---TVEVERALRVLDGAILVLCSVGGVQSQ---SITVDRQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~------df---~~~~~~al~~aD~aIlVvDa~~gv~~q---t~~~~~~~~~~--~~p~iiviNK~D~~~ 206 (762)
. .. ...+......+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 87 LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp TTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 4 32 122334467789999999998875433 23444555554 899999999999853
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=171.25 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=79.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+|+|++|+|||||+++|+... .. .. ..|+......+.+++..++||||||+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~--~~---------------~~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC--CE---------------EE-------EEETTEEEEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC--CC---------------Cc-------ccccceEEEEEecCcEEEEEEECCCC
Confidence 34579999999999999999994211 10 00 01444455667788999999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHH-HH---cCCCEEEEEeCCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQM-RR---YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~-~~---~~~p~iiviNK~D~~~~ 207 (762)
.+|...+..+++.+|++|+|+|+++........ .|... .. .++|+++|+||+|+...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999999999999999999999997654443322 22222 22 27899999999999654
No 127
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=1.1e-16 Score=156.28 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=76.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
+..+|+++|++|+|||||+++|+...-.. ++. ...+.+. ...+.+++ +.++|||||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~----------------~~~---~t~~~~~---~~~~~~~~~~~~~~l~Dt~ 62 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD----------------SYD---PTIENTF---TKLITVNGQEYHLQLVDTA 62 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS----------------CCC---TTCCEEE---EEEEEETTEEEEEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCC---CCccccE---EEEEEECCEEEEEEEEeCC
Confidence 45789999999999999999997432110 000 0112222 22333444 678999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-----HHHHcCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-----QMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-----~~~~~~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+.+.........|. .+...++|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 99999777788889999999999998754444433332 2223479999999999985
No 128
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=4.5e-16 Score=149.47 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|+++|++|+|||||+++|+...... .....|.+.. ....+......+.+|||||+.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGP--------------------EAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------------------------CEEE-EEEEETTEEEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccC--------------------CCCccccceE-EEEEECCEEEEEEEEECCCCcc
Confidence 579999999999999999994211000 0011333332 1222333446889999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~ 206 (762)
|......+++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 9988999999999999999998765443333 3333433 3789999999999853
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=7.2e-16 Score=152.83 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=78.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|++|+|||||+++|+...-.. . +.. ..+.+.. ....+......+.||||||+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~-----~~~------t~~~~~~-~~~~~~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--------T-----YIP------TIEDTYR-QVISCDKSVCTLQITDTTGS 66 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--------T-----TSC------CCCEEEE-EEEEETTEEEEEEEEECCGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--------c-----ccC------cccccee-EEEEECCEEEEEEEEeCCCh
Confidence 45689999999999999999997532110 0 000 0111111 11122223468999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHH-----cCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR-----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~-----~~~p~iiviNK~D~~~ 206 (762)
.+|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 999999999999999999999998754433322 3333332 3789999999999853
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=4.7e-17 Score=183.39 Aligned_cols=115 Identities=27% Similarity=0.347 Sum_probs=89.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC-
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG- 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG- 149 (762)
..++|+|+|++|+|||||+|+|+..... .+ +..+|+|.+.....+.|.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-----~v---------------~~~~g~t~~~~~~~~~~~~~~~~liDT~G~ 81 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-----IV---------------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-------------------------------CEEEECTTCSSCCEEECCCC-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-----cc---------------CCCCCcceeEEEEEEEECCceEEEEECCCC
Confidence 4578999999999999999999432110 01 11378899988888999999999999999
Q ss_pred -------CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 -------HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 -------~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+..|...+..+++.+|++|+|+|+..+....+..+++.+.+.++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 82 DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -----CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 56677778889999999999999999999999999999998999999999999974
No 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-16 Score=161.91 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+....... ..+.++.......+.+++ ..+.||||
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt 69 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD---------------------SKSTIGVEFATRTLEIEGKRIKAQIWDT 69 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------------------CCSEEEEEEEETTEEEEEEEECC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCcccceeEEEEEEECCEEEEEEEEEC
Confidence 4567999999999999999999975322110 012222222333444555 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999988888899999999999999987655554444 33333 378999999999984
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.67 E-value=2.1e-16 Score=177.94 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc-
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 151 (762)
.+|+|+|.+|+|||||+|+|+.....+ +.+ ..|+|.+.....+.+++..+.||||||+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--------------vs~------~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~ 303 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--------------VTD------IPGTTRDVISEEIVIRGILFRIVDTAGVRS 303 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--------------CCC------SSCCSSCSCCEEEEETTEEEEEEESSCCCS
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc--------------cCC------CCCeeeeeEEEEEecCCeEEEEEECCCccc
Confidence 589999999999999999998754322 111 16778888888888999999999999998
Q ss_pred CcH--------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 152 DFT--------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 152 df~--------~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
++. .....+++.+|++|+|+|++++...+...+++.+ .++|+++|+||+|+.
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 653 3456788999999999999998877777777665 488999999999985
No 133
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.67 E-value=1.7e-16 Score=155.27 Aligned_cols=115 Identities=16% Similarity=0.029 Sum_probs=78.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
..+|+++|++|+|||||+++|+...-.... . .+ .+.+. .....+......+.+|||||+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~------~---~t----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEY------I---PT----------VFDNY-SANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSC------C---CC----------SCCEE-EEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCc------C---Cc----------cccee-EEEEEECCEEEEEEEEECCCCH
Confidence 357999999999999999999753211000 0 00 01011 1111222234577899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004311 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (762)
+|...+..+++.+|++|+|+|++++...+... .| ..+... ++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred hHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 99888888899999999999998876555543 33 334433 899999999999853
No 134
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=8.5e-18 Score=167.48 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|++|+|||||+++|+.. ....+..++++.+.....+.+++ ..+.||||
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 89 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD---------------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC---------------------CCCCHHHHHHCCSEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC---------------------CCCCCcCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 45689999999999999999998421 01112224445455555556665 68999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHHc---CCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY---EVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~---~~p~iiviNK~D~~ 205 (762)
||+.+|...+..+++.+|++|+|+|+++....+....|.. +... ++|+++|+||+|+.
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 9999998888889999999999999998766555444433 3322 78999999999985
No 135
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=6.9e-17 Score=157.70 Aligned_cols=116 Identities=17% Similarity=0.074 Sum_probs=74.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+...-..... .+ .+.... ....+......+.||||||+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~---------~t----------~~~~~~-~~~~~~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV---------PT----------VFDNFS-ANVVVNGATVNLGLWDTAGQ 66 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CB-CCCC-------CEEECCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---------Ce----------eeeeEE-EEEEECCEEEEEEEEECCCC
Confidence 34689999999999999999997532110000 00 000010 01112223467789999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHH-HHHH--cCCCEEEEEeCCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~~-~~~~--~~~p~iiviNK~D~~~ 206 (762)
.+|...+..+++.+|++|+|+|+++....+... .|. .+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 999988888999999999999998865555443 343 3333 2799999999999853
No 136
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.67 E-value=7.2e-16 Score=153.13 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=79.4
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe---ecCeeEEEE
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---WKDYQINII 145 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~i~li 145 (762)
.++..+|+++|..|+|||||+++|...... +...|.+......... .....++||
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 74 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP----------------------NETLFLESTNKIYKDDISNSSFVNFQIW 74 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG----------------------GGGGGCCCCCSCEEEEECCTTSCCEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC----------------------cceeeeccccceeeeeccCCCeeEEEEE
Confidence 445678999999999999999987431100 0112223333333332 345799999
Q ss_pred eCCCCcCcHHHH---HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCCC
Q 004311 146 DTPGHVDFTVEV---ERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 146 DTPG~~df~~~~---~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~~ 206 (762)
||||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 999999998777 799999999999999998733333333333332 3789999999999853
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=3e-16 Score=157.09 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=80.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (762)
.+..+|+++|++|+|||||+++|+...-.-.. .+++.......+.++ ...++||||
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----------------------~~t~~~~~~~~~~~~~~~~~l~i~Dt 85 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----------------------IPTVFDNYSANVMVDGKPVNLGLWDT 85 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C----------------------CCCSEEEEEEEEECC-CEEEEEEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc----------------------CCeecceeEEEEEECCEEEEEEEEEC
Confidence 34568999999999999999999753221100 111111112223333 356779999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|++++...+... .| ..+... ++|+++|+||+|+..
T Consensus 86 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 86 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred CCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 999999888888999999999999999876665543 33 334443 899999999999854
No 138
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=158.70 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+..+|+++|.+|+|||||+++|+...-.... . ...+.+. .....+......+.||||||
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~---~t~~~~~-~~~~~~~~~~~~~~l~Dt~G 81 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----------------D---PTVENTY-SKIVTLGKDEFHLHLVDTAG 81 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----------------C---CCSEEEE-EEEEC----CEEEEEEEECC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----------------C---CccceEE-EEEEEECCEEEEEEEEECCC
Confidence 45689999999999999999999753221100 0 0011111 22222334568899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH----HcCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~----~~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred ccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 99998888889999999999999997655444443332 22 2378999999999984
No 139
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=7.8e-17 Score=162.69 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (762)
+...+|+++|++|+|||||+++|+...-.. . .. ...|.+..........+. ..+.|||||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~---~~---------------~t~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK-N---YN---------------ATVGAVNHPVTFLDDQGNVIKFNVWDTA 69 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC-E---EE---------------TTTTEEEEEEEEEBTTSCEEEEEEEEEC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC-C---CC---------------CccceeeEEEEEEeCCCcEEEEEEEecC
Confidence 356789999999999999999995321100 0 00 001222211111111111 679999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---HcCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~~p~iiviNK~D~~ 205 (762)
|+.+|.......++.+|++|+|+|+.++...+....|. .+. ..++|+++|+||+|+.
T Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp SGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999888888999999999999999887666554442 222 2368999999999985
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=6.2e-16 Score=154.98 Aligned_cols=113 Identities=13% Similarity=0.039 Sum_probs=78.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|++|+|||||+++|+........ ....+.+.. ..+..++ ..+.||||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------------~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G 82 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-------------------VPTVFENYV---ADIEVDGKQVELALWDTAG 82 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------------------------CCEEE---EEEEETTEEEEEEEEECTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-------------------CCcccceEE---EEEEECCEEEEEEEEECCC
Confidence 468999999999999999999753221100 000111111 1233343 6899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-H-HHHHHHHc--CCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-T-VDRQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~-~~~~~~~~--~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|++.....+.. . .+..+... ++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp CTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred cHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 999988888889999999999999876443333 2 33334433 899999999999853
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=5.9e-16 Score=159.93 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=90.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
.-.+|+++|++|+|||||+|+|+.....+... ...|+|.......+.+++..++||||||.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-------------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL-------------------GATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC-------------------CCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 34689999999999999999997654332110 01356777777788899999999999998
Q ss_pred --------cCcHHHHHHHH----HhcCEEEEEEeCCCCcchhHHHHHHHHHHc------CCCEEEEEeCCCCCCCCh
Q 004311 151 --------VDFTVEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRRY------EVPRLAFINKLDRMGADP 209 (762)
Q Consensus 151 --------~df~~~~~~al----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~------~~p~iiviNK~D~~~~~~ 209 (762)
.+|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+++|.||+|+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~ 156 (247)
T 3lxw_A 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSL 156 (247)
T ss_dssp SSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCH
Confidence 56777777776 89999999999975 667777777777664 789999999999976543
No 142
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.65 E-value=4.4e-16 Score=154.17 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=80.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (762)
++..+|+++|++|+|||||+++|+...-.... .. ..+.+.. ..+.++ .+.+.||||
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~----~~---------------t~~~~~~---~~~~~~~~~~~~~i~Dt 78 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY----VP---------------TVFENFS---HVMKYKNEEFILHLWDT 78 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CC---------------CSEEEEE---EEEEETTEEEEEEEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc----CC---------------eeeeeeE---EEEEECCEEEEEEEEEC
Confidence 34578999999999999999999753311000 00 0111111 122333 356799999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHHHc--CCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~~--~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+++....... ..|. .+... ++|+++|+||+|+..
T Consensus 79 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999998888999999999999999987555442 3333 33333 689999999999863
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=154.92 Aligned_cols=115 Identities=15% Similarity=0.002 Sum_probs=64.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (762)
.+..+|+++|.+|+|||||+++|+...-.. . + ..++.......+.++ ...+.||||
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--------~--------~------~~t~~~~~~~~~~~~~~~~~l~l~Dt 89 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE--------S--------Y------TPTVFERYMVNLQVKGKPVHLHIWDT 89 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-----------------------------CCCCCEEEEEEEEETTEEEEEEEEEC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC--------C--------C------CCccceeEEEEEEECCEEEEEEEEEC
Confidence 345789999999999999999996321100 0 0 000111111223333 358999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHH--cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~--~~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+++....+... .| ..+.. .++|+++|+||+|+..
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp ---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred CCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 999999998899999999999999998865544432 33 33333 3799999999999854
No 144
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=1.5e-16 Score=158.82 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec----CeeEEEEe
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----DYQINIID 146 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~liD 146 (762)
...+|+++|++|+|||||+++|+........ +....+..+.....+.++ ...+.|||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~D 79 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK-------------------DYAMTSGVEVVVAPVTIPDTTVSVELFLLD 79 (208)
T ss_dssp EEEEEEEC-----------------------------------------------------CEEEECTTSSEEEEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC-------------------CCCCccceEEEEEEEEECCcccEEEEEEEE
Confidence 3468999999999999999999643111100 000111112233344455 46899999
Q ss_pred CCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH------cCCCEEEEEeCCCCC
Q 004311 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~------~~~p~iiviNK~D~~ 205 (762)
|||+.+|...+..+++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+.
T Consensus 80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 999999998888899999999999999887654444433 33333 478999999999985
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=9.1e-17 Score=180.09 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+|+|+|++|+|||||+|+|+.....+. . + ..|+|.+.....+.+++..++||||||+.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-----~---------~------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV-----T---------D------LPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC-----S---------C------CTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc-----c---------C------CCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 4699999999999999999987644321 1 1 156777777777888999999999999987
Q ss_pred cHHHHHH--------HHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 153 FTVEVER--------ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 153 f~~~~~~--------al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
+...+.. +++.+|++|+|+|+.++...+...++..+. ++|+++|+||+|+..
T Consensus 285 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 285 TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVE 344 (462)
T ss_dssp --------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSC
T ss_pred chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCc
Confidence 7554433 467899999999999998888877777664 379999999999864
No 146
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.64 E-value=3.9e-16 Score=156.80 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 148 (762)
...+|+++|++|+|||||+++|+...-.... . .+ .|... ...+.++ ...+.|||||
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~----~-----~t----------~~~~~---~~~~~~~~~~~~~~i~Dt~ 65 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----I-----PT----------VFDNF---SANVAVDGQIVNLGLWDTA 65 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----C-----CS----------SCCCE---EEEEECSSCEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccC----C-----Cc----------cceeE---EEEEEECCEEEEEEEEECC
Confidence 4568999999999999999999753211000 0 00 11111 1122233 3689999999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~ 205 (762)
|+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+.
T Consensus 66 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp CCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred CcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 99999888888999999999999998865554432 33 333333 89999999999974
No 147
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.64 E-value=2.1e-15 Score=152.45 Aligned_cols=114 Identities=19% Similarity=0.129 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-+|+++|..++|||||+++++...-.. ++ ...-|.........+......+.||||+|+.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~----------------~~---~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDN----------------TY---QATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCC----------------Cc---CCccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 469999999999999999997432100 00 00112222222222233346889999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH---HcCCCEEEEEeCCCCC
Q 004311 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR---RYEVPRLAFINKLDRM 205 (762)
Q Consensus 153 f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~~p~iiviNK~D~~ 205 (762)
|...+..+++.+|++|+|+|.+.....+...-|.. +. ..++|+++|.||+|+.
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 99999999999999999999988766555444432 22 2468999999999984
No 148
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=155.53 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=78.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
.+..+|+++|++|+|||||+++|+...- .. . + ..++.......+.+++ ..+.||||
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~------~---------~------~~t~~~~~~~~~~~~~~~~~~~i~Dt 75 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PT------E---------Y------IPTAFDNFSAVVSVDGRPVRLQLCDT 75 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------------------------CCSSEEEEEEEEETTEEEEEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CC------C---------C------CCcccceeEEEEEECCEEEEEEEEEC
Confidence 4557899999999999999999964320 00 0 0 1111111122344444 57789999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+++........ .| ..+... ++|+++|+||+|+..
T Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 76 AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999999888888899999999999998875555442 23 333332 899999999999853
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=2.6e-15 Score=149.22 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=78.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|.+|+|||||+++|........ ...+++.+.....+.+++ ..+.+|||
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt 79 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA---------------------HEPENPEDTYERRIMVDKEEVTLVVYDI 79 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG---------------------GTTTSCTTEEEEEEEETTEEEEEEEECC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc---------------------CCCCcccceEEEEEEECCEEEEEEEEec
Confidence 4567899999999999999999942211110 012222222223344444 57889999
Q ss_pred CCCcCcHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~-~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~~ 206 (762)
||+.+|.. ....+++.+|++|+|+|+++.........| ..+.. .++|+++|.||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998865 556778999999999999876544433333 23332 3799999999999853
No 150
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.64 E-value=1.1e-15 Score=152.32 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=79.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|++|+|||||+++|+........ ...++... ...+.+++ ..+.||||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 82 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY---------------------VPTVFENY-IADIEVDGKQVELALWDTAG 82 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC---------------------CCSSCCCC-EEEEEETTEEEEEEEECCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc---------------------CCcccceE-EEEEEECCEEEEEEEEECCC
Confidence 468999999999999999999753221100 01111111 11233333 5899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-H-HHHHHHHc--CCCEEEEEeCCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-T-VDRQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~-~~~~~~~~--~~p~iiviNK~D~~~ 206 (762)
+.+|...+..+++.+|++|+|+|++.....+.. . .+..+... ++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred chhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 999988888889999999999999876444433 2 33334443 899999999999864
No 151
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=1.4e-15 Score=149.41 Aligned_cols=110 Identities=25% Similarity=0.366 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC--
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (762)
.+|+++|++|+|||||+++|+...-. ....+|+|..... +.+. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR---------------------RGKRPGVTRKIIE--IEWK--NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS---------------------SSSSTTCTTSCEE--EEET--TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc---------------------cCCCCCccceeEE--EecC--CEEEEECCCccc
Confidence 57999999999999999999642110 0112355544433 3333 7999999994
Q ss_pred ---------cCcHHHHHHHHHh----cCEEEEEEeCCCCc-----------chhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 151 ---------VDFTVEVERALRV----LDGAILVLCSVGGV-----------QSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ---------~df~~~~~~al~~----aD~aIlVvDa~~gv-----------~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
..|...+..+++. +++++.|+|+.... ..++..++..+...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 57 MMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 4555555555554 55666677765321 12233455556667999999999999865
Q ss_pred C
Q 004311 207 A 207 (762)
Q Consensus 207 ~ 207 (762)
.
T Consensus 137 ~ 137 (190)
T 2cxx_A 137 N 137 (190)
T ss_dssp C
T ss_pred c
Confidence 4
No 152
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.63 E-value=3.6e-15 Score=146.70 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=74.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
+..+|+++|.+|+|||||+++|+...-.. .+.+ |.......+.+++ ..+.|||||
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----------------~~~~-------t~~~~~~~~~~~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ----------------EESP-------EGGRFKKEIVVDGQSYLLLIRDEG 75 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC----------------CCCT-------TCEEEEEEEEETTEEEEEEEEECS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCC-------CcceEEEEEEECCEEEEEEEEECC
Confidence 34679999999999999999997532110 0000 1111112344444 677889999
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
|+.+|. +++.+|++|+|+|+++....+....| ..+.. .++|+++|.||+|+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999987 78899999999999987666654434 33333 368999999999984
No 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=5.5e-15 Score=146.56 Aligned_cols=114 Identities=19% Similarity=0.117 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+...-... +.+ ..+... .....+......+.||||||+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~---t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 86 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE----------------YDP---TLESTY-RHQATIDDEVVSMEILDTAGQ 86 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC----------------CCT---TCCEEE-EEEEEETTEEEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc----------------cCC---CCCceE-EEEEEECCEEEEEEEEECCCC
Confidence 457899999999999999999975321100 000 011111 111222223478999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~-~~~~~----~~~~p~iiviNK~D~~ 205 (762)
.+ ...+...++.+|++|+|+|+++......... +..+. ..++|+++|+||+|+.
T Consensus 87 ~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 87 ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred Cc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 98 6777889999999999999987543332222 22222 2589999999999984
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=146.78 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=74.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+..+|+++|.+|+|||||+++|+...-.. ++.+ ..|.+. .....+......+.||||||
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~----------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G 78 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFIS----------------EYDP---NLEDTY-SSEETVDHQPVHLRVMDTAD 78 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS----------------CCCT---TCCEEE-EEEEEETTEEEEEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCc----------------ccCC---Ccccee-eEEEEECCEEEEEEEEECCC
Confidence 345789999999999999999997542110 0000 011111 11122223346889999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH------cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~------~~~p~iiviNK~D~~ 205 (762)
+.+|.. +..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp ---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 988865 46789999999999999876554443333 33322 489999999999984
No 155
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.60 E-value=8.5e-15 Score=142.42 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=72.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|.+|+|||||+++|+...-.. +.+ ..|.+. ...+.+++ ..+.+|||||
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------~~~---t~~~~~---~~~~~~~~~~~~l~i~Dt~G 63 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-----------------LEK---TESEQY---KKEMLVDGQTHLVLIREEAG 63 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-----------------CSS---CSSSEE---EEEEEETTEEEEEEEEECSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------cCC---CcceeE---EEEEEECCEEEEEEEEECCC
Confidence 4679999999999999999997532110 000 011111 12233333 6789999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHH------cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR------YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~------~~~p~iiviNK~D~~ 205 (762)
+.+ ..+++.+|++|+|+|+++....+....|. .+.. .++|+++|.||+|+.
T Consensus 64 ~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 64 APD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp SCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred Cch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 987 45788999999999999876655555442 2222 378999999999984
No 156
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=1.4e-15 Score=153.48 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|..|+|||||+++|+...-... +.+ ..|.+. .....+......+.||||||+
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~----------------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPET----------------YVP---TVFENY-TACLETEEQRVELSLWDTSGS 85 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------CCC---CSEEEE-EEEEEC--CEEEEEEEEECCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC----------------cCC---eeeeeE-EEEEEECCEEEEEEEEECCCC
Confidence 456899999999999999999975321110 000 011111 112223344578999999999
Q ss_pred cCcHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHH-HHHHHc--CCCEEEEEeCCCCC
Q 004311 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVD-RQMRRY--EVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~~al~~aD~aIlVvDa~~gv~~qt-~~~~-~~~~~~--~~p~iiviNK~D~~ 205 (762)
.+|...+..+++.+|++|+|+|+++...... ...| ..+... ++|+++|.||+|+.
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 9998888889999999999999998765554 3344 334433 78999999999985
No 157
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=4.6e-16 Score=159.84 Aligned_cols=141 Identities=17% Similarity=0.176 Sum_probs=87.7
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (762)
....++|+++|++|+|||||+++|+....... .....++|.......+.+++..++|||||
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-------------------~~~~~~~t~~~~~~~~~~~~~~i~liDTp 86 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-------------------GTAAKSITKKCEKRSSSWKETELVVVDTP 86 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------------------CCSCEEEEEEETTEEEEEEECC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-------------------CCCCCceeeeEEEEEEEeCCceEEEEECC
Confidence 34678999999999999999999974322110 01123667777777888999999999999
Q ss_pred CCcCc-------HHHHHH----HHHhcCEEEEEEeCCCCcchhHHHHHHHHH-----HcCCCEEEEEeCCCCCCCC-hh-
Q 004311 149 GHVDF-------TVEVER----ALRVLDGAILVLCSVGGVQSQSITVDRQMR-----RYEVPRLAFINKLDRMGAD-PW- 210 (762)
Q Consensus 149 G~~df-------~~~~~~----al~~aD~aIlVvDa~~gv~~qt~~~~~~~~-----~~~~p~iiviNK~D~~~~~-~~- 210 (762)
|+.+. ...+.+ +.+.+|++|+|+|+.... ......+..+. ....|+++|+||+|+.... ..
T Consensus 87 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 165 (239)
T 3lxx_A 87 GIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHD 165 (239)
T ss_dssp SCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------
T ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHH
Confidence 97653 223333 334569999999987543 33333333332 2456999999999986532 21
Q ss_pred ------HHHHHHHHHhccceeeeee
Q 004311 211 ------KVLDQARSKLRHHCAAVQV 229 (762)
Q Consensus 211 ------~~~~~i~~~l~~~~~~~~~ 229 (762)
+.++++.+.++.....+..
T Consensus 166 ~i~~~~~~l~~l~~~~~~~~~~~~~ 190 (239)
T 3lxx_A 166 YLREAPEDIQDLMDIFGDRYCALNN 190 (239)
T ss_dssp -----CHHHHHHHHHHSSSEEECCT
T ss_pred HHHhchHHHHHHHHHcCCEEEEEEC
Confidence 2456666666655444333
No 158
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.59 E-value=3.2e-15 Score=146.67 Aligned_cols=116 Identities=12% Similarity=-0.021 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+...+|+++|++|+|||||+++|+...-... +.+ ..+.+. .....+......+.||||||
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~---t~~~~~-~~~~~~~~~~~~~~i~Dt~G 64 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----------------YVP---TVFENY-TASFEIDTQRIELSLWDTSG 64 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCC---CSEEEE-EEEEECSSCEEEEEEEEECC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCC---ccceeE-EEEEEECCEEEEEEEEECCC
Confidence 3457899999999999999999975321100 000 001111 01112223346899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+++....+.. ..| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 999988778888999999999999886554443 334 33333 378999999999985
No 159
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.59 E-value=1.9e-15 Score=163.05 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=80.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPG 149 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG 149 (762)
.+.+|+++|.+|+|||||+++|...... + .++ ..+|.......+.+.+ ..+.||||||
T Consensus 157 ~la~V~lvG~~nvGKSTLln~L~~~~~~------i---------~~~------~ftTl~p~~g~v~~~~~~~~~l~DtPG 215 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLSVVSSAKPK------I---------ADY------HFTTLVPNLGMVETDDGRSFVMADLPG 215 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHHHSEEECCE------E---------SST------TSSCCCCCEEEEECSSSCEEEEEEHHH
T ss_pred hcCeeeeeCCCCCCHHHHHHHHHcCCCc------c---------ccC------CccccCceEEEEEeCCCceEEEecCCC
Confidence 3568999999999999999999432110 1 111 3456666666677775 8999999999
Q ss_pred CcC-------cHHHHHHHHHhcCEEEEEEeCCC---CcchhH-HHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 150 HVD-------FTVEVERALRVLDGAILVLCSVG---GVQSQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~d-------f~~~~~~al~~aD~aIlVvDa~~---gv~~qt-~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
+.+ +.....+.+..+|++|+|+|++. ....+. ..++..+.. .++|+++|+||+|+.
T Consensus 216 ~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 216 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred CcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 743 44556677778999999999976 222222 333444444 378999999999985
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.59 E-value=4.5e-15 Score=155.76 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=78.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
-.||+++|++|+|||||+|+|+......... . . ......+++++......+.+++ ..++||||||
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~---~-~---------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY---P-G---------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------------------CCCEEEEEEECC--CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC---C-C---------cccccCCceEEEEEEEEEecCCeEEEEEEEECCC
Confidence 3689999999999999999995332211110 0 0 0001124455555555555655 4899999999
Q ss_pred CcC-------cHHHH-------HHHHHh-------------cCEEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004311 150 HVD-------FTVEV-------ERALRV-------------LDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINK 201 (762)
Q Consensus 150 ~~d-------f~~~~-------~~al~~-------------aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~~p~iiviNK 201 (762)
+.+ |...+ ..+++. +|+++++++.. .+....+..+++.+.. ++|+|+|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 843 33322 455554 78898888655 5888888888888877 8999999999
Q ss_pred CCCC
Q 004311 202 LDRM 205 (762)
Q Consensus 202 ~D~~ 205 (762)
+|+.
T Consensus 154 ~D~~ 157 (274)
T 3t5d_A 154 ADTL 157 (274)
T ss_dssp GGGS
T ss_pred cCCC
Confidence 9984
No 161
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.59 E-value=3.1e-15 Score=160.08 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=55.6
Q ss_pred cCeeEEEEeCCCCcC-------------cHHHHHHHHHhcCEEEEEEeC-CCCcchhH-HHHHHHHHHcCCCEEEEEeCC
Q 004311 138 KDYQINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCS-VGGVQSQS-ITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 138 ~~~~i~liDTPG~~d-------------f~~~~~~al~~aD~aIlVvDa-~~gv~~qt-~~~~~~~~~~~~p~iiviNK~ 202 (762)
.+..++||||||+.+ +...+..+++.+|++|+|+|+ ..+...+. ..+++.+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 556678899999999999997 55655444 467777777899999999999
Q ss_pred CCCC
Q 004311 203 DRMG 206 (762)
Q Consensus 203 D~~~ 206 (762)
|+..
T Consensus 209 Dl~~ 212 (315)
T 1jwy_B 209 DLMD 212 (315)
T ss_dssp TSSC
T ss_pred ccCC
Confidence 9864
No 162
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.59 E-value=1.8e-15 Score=163.77 Aligned_cols=243 Identities=15% Similarity=0.110 Sum_probs=141.9
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCcc---ccccCChhhhh----hhcc------------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMDLER----EKGI------------ 126 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~---~~~~d~~~~e~----~~gi------------ 126 (762)
..+...|+++|++|+|||||+++|+... +.-...-..+.+... ..+.|....+. .++.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 3567899999999999999999997432 111111011111000 11111111110 1111
Q ss_pred -eeecc--eEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004311 127 -TIQSA--ATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 127 -Ti~~~--~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D 203 (762)
+.... ...+.|+++.++||||||+.++... ..+.+|++|+|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 00000 0012367899999999999886654 4689999999999987654332211 113578999999999
Q ss_pred CCCC-ChhHHHHHHHHHhcc-ce-----eeeeecCC--CcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHH
Q 004311 204 RMGA-DPWKVLDQARSKLRH-HC-----AAVQVPMG--LEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAE 274 (762)
Q Consensus 204 ~~~~-~~~~~~~~i~~~l~~-~~-----~~~~~pi~--~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~ 274 (762)
+.+. +....++++...++. .+ .+..+|+. .+..+.++++.+......|.. + ..+|. ....+
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~--~-----~~~~~---~r~~~ 275 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA--S-----GRLQQ---VRQQQ 275 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH--T-----THHHH---HHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh--C-----ChHHH---HHHHH
Confidence 9754 334444566554332 11 22344554 567777777776654433321 1 01221 22334
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeeecccccCCCchHHHHHHHHh
Q 004311 275 KRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLS 341 (762)
Q Consensus 275 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~ 341 (762)
.+..+.|.+ ++.++++|+++ ++.+++...+++++..+.+.|++|. +.|++.+..
T Consensus 276 ~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~~--------~~~~~~~~~ 329 (341)
T 2p67_A 276 SVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTGL--------RQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHHH--------HHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhh
Confidence 566666664 78899999985 7888999999999999999999864 568877754
No 163
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.59 E-value=9.9e-15 Score=155.72 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=85.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-cCeeEEEEeCCCCc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHV 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 151 (762)
.+|+++|.+|+|||||+++|+...... .....|.|+......+.+ ++..+++|||||+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~--------------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAF--------------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTG--------------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--------------------cccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 579999999999999999996432111 111356677776666665 57899999999999
Q ss_pred Cc-----HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH----HH--cCCCEEEEEeCCCCCC
Q 004311 152 DF-----TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df-----~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~----~~--~~~p~iiviNK~D~~~ 206 (762)
+| ...+..+++.+|++|+|+|+++....+....|... .. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 88 45567778999999999999988766665544322 21 2799999999999853
No 164
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.58 E-value=4.3e-15 Score=148.93 Aligned_cols=116 Identities=12% Similarity=-0.021 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
+...+|+++|.+|+|||||+++|+...-... +.+ ..+.+. .....+......+.||||||
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~----------------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G 85 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----------------YVP---TVFENY-TASFEIDTQRIELSLWDTSG 85 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCC---CSEEEE-EEEEESSSSEEEEEEEEECC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------------cCC---ccceeE-EEEEEECCEEEEEEEEeCCC
Confidence 4567899999999999999999975321100 000 001111 01111222347899999999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~ 205 (762)
+.+|...+..+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+.
T Consensus 86 ~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 86 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred cHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 999988778888999999999999876554443 334 33333 378999999999985
No 165
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.34 E-value=2e-16 Score=158.06 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=79.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeec--ceEEEeecCeeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS--AATSCAWKDYQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~i~liDT 147 (762)
.+..+|+++|.+|+|||||+++|+...-.... ..++... ....+......+.||||
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------------~~t~~~~~~~~~~~~~~~~~l~i~Dt 85 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----------------------IPTVFDNYSANVMVDGKPVNLGLWDT 85 (204)
Confidence 34578999999999999999999642210000 0001111 11122233467789999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|++++...+... .| ..+... ++|+++|+||+|+..
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 86 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 999999999999999999999999998876555442 33 333333 789999999999853
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.56 E-value=9.1e-15 Score=155.09 Aligned_cols=136 Identities=17% Similarity=0.145 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCc----------c--------ccccCChh----hh----hh-
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG----------V--------GAKMDSMD----LE----RE- 123 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~----------~--------~~~~d~~~----~e----~~- 123 (762)
...+|+++|.+|+|||||+|+|+.........+.+..... . ..+++... .+ +-
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999865432100000000000 0 00011110 00 00
Q ss_pred ---hcceeecceEEEeec-CeeEEEEeCCCCc-------------CcHHHHHHHHHhcCEEE-EEEeCCCCcchhHH-HH
Q 004311 124 ---KGITIQSAATSCAWK-DYQINIIDTPGHV-------------DFTVEVERALRVLDGAI-LVLCSVGGVQSQSI-TV 184 (762)
Q Consensus 124 ---~giTi~~~~~~~~~~-~~~i~liDTPG~~-------------df~~~~~~al~~aD~aI-lVvDa~~gv~~qt~-~~ 184 (762)
.|++.......+... ...++||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 233322222222222 4789999999974 34556678888898777 69999988877764 46
Q ss_pred HHHHHHcCCCEEEEEeCCCCCC
Q 004311 185 DRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 185 ~~~~~~~~~p~iiviNK~D~~~ 206 (762)
++.+...++|+++|+||+|+..
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHhCCCCCeEEEEEEccccCC
Confidence 6666667899999999999864
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.54 E-value=4.4e-14 Score=153.83 Aligned_cols=115 Identities=22% Similarity=0.242 Sum_probs=77.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
.++.|+|+|++|+|||||+|+|..... ..+...+.|++.....+.+++..+.++||||+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~---------------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ---------------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--------------------------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc---------------------cccCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence 466799999999999999999953211 00112566777777788888999999999998
Q ss_pred cCc--------HHHHHHHHHhcCEEEEEEeCCCCc--chhHHH-HHHHHHH---cCCCEEEEEeCCCCCC
Q 004311 151 VDF--------TVEVERALRVLDGAILVLCSVGGV--QSQSIT-VDRQMRR---YEVPRLAFINKLDRMG 206 (762)
Q Consensus 151 ~df--------~~~~~~al~~aD~aIlVvDa~~gv--~~qt~~-~~~~~~~---~~~p~iiviNK~D~~~ 206 (762)
.+. ...+...+..+|++++|+|+.++. ...... +...+.. .++|+++|.||+|+..
T Consensus 237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 431 122344578899999999998764 222222 2223333 4789999999999864
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.53 E-value=1.7e-14 Score=154.97 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=80.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
....+|+++|.+|+|||||+++|+...-... ..+++.......+..++ ..+.||||
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt 210 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGE----------------------YIPTVFDNYSANVMVDGKPVNLGLWDT 210 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCS----------------------CCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcc----------------------cCCcccceeEEEEEECCEEEEEEEEeC
Confidence 3457899999999999999999974321100 01112222222334444 45669999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (762)
||+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 211 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 999999888888899999999999999876555543 23 334333 899999999999853
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=4.4e-14 Score=153.99 Aligned_cols=114 Identities=22% Similarity=0.257 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|++|+|||||+++|+... .. +.+ ..+.|.......+.+++..+.+|||||+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~---~~---~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 224 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK---PE---IAS---------------YPFTTRGINVGQFEDGYFRYQIIDTPGL 224 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC---CE---EEC---------------CTTCSSCEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---Cc---cCC---------------CCCeeeceeEEEEEecCceEEEEeCCCc
Confidence 46789999999999999999995321 11 111 1344555555566677889999999999
Q ss_pred cCcHH--------HHHHHH-HhcCEEEEEEeCCCCc--chhH-HHHHHHHHH-c-CCCEEEEEeCCCCC
Q 004311 151 VDFTV--------EVERAL-RVLDGAILVLCSVGGV--QSQS-ITVDRQMRR-Y-EVPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~--------~~~~al-~~aD~aIlVvDa~~gv--~~qt-~~~~~~~~~-~-~~p~iiviNK~D~~ 205 (762)
.++.. ....++ ..+|++|+|+|+..+. ..+. ...+..+.. . ++|+++|+||+|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 66421 122222 3589999999987643 3333 233333333 2 89999999999985
No 170
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=7.3e-14 Score=140.60 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (762)
+...+|+++|.+|+|||||+++|+.....+.. +. ...|.+.. ...+.+++ ..+.+|||
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~--------------~~----~~~g~d~~--~~~i~~~~~~~~l~~~Dt 94 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DC----EVLGEDTY--ERTLMVDGESATIILLDM 94 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC--------------C-------CCTTEE--EEEEEETTEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------cC----CccceeeE--EEEEEECCeeeEEEEeec
Confidence 34578999999999999999999632221110 00 00122221 22234444 46788999
Q ss_pred CCCcC-cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 148 PGHVD-FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~d-f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
+|... +......+++.+|++|+|+|.++....+....| ..+.. .++|+++|.||+|+.
T Consensus 95 ~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 99876 333333445779999999999875444433333 33332 378999999999984
No 171
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.50 E-value=4.7e-14 Score=138.45 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe-----ecCeeEEEEeC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-----WKDYQINIIDT 147 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~liDT 147 (762)
.+|+++|.+|+|||||+++|+....... + +....+.++.....+. .....+.+|||
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~------~-------------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt 63 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL------G-------------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------------------------CSEEEEEEEC---------CEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC------C-------------CcceeccEEeEEeeeccccCCCCceEEEEEec
Confidence 3699999999999999999953211100 0 0001111111111111 14578999999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHH-HHHHH--cCCCEEEEEeCCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVD-RQMRR--YEVPRLAFINKLDRMG 206 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~~~-~~~~~--~~~p~iiviNK~D~~~ 206 (762)
||+.+|......+++.+|++++|+|.+++. .......| ..+.. .++|+++|.||+|+..
T Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 64 AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp CSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 999888877788889999999999998763 22222223 22222 3789999999999853
No 172
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.49 E-value=2.4e-13 Score=134.56 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
...+|+++|.+|+|||||+++|+.....+.. +. ...|.+.. ...+.+++ ..+.+|||+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~--------------~~----~~~~~~~~--~~~~~~~~~~~~l~~~Dt~ 64 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DX----EVLGEDTY--ERTLMVDGESATIILLDMW 64 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----------------------GGGCTTEE--EEEEEETTEEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc--------------cc----cccceeEE--EEEEEECCeEEEEEEEEec
Confidence 3467999999999999999999754332211 00 00122221 22334444 466889999
Q ss_pred CCcC-cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004311 149 GHVD-FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~d-f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (762)
|... +......+++.+|++|+|+|.++....+....| ..+.. .++|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 65 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp CC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred cCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 9865 222335567889999999999875544443333 33332 378999999999974
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=3.5e-13 Score=135.71 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=79.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+..+|+++|++|+|||||+++|+....... .... ..+++. .+....+++|||||
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-------------~~~~-----~~~~~~-------~~~~~~~~l~Dt~G 64 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VVSQ-----EPLSAA-------DYDGSGVTLVDFPG 64 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-------------CCCS-----SCEEET-------TGGGSSCEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-------------eeec-----CceEEE-------EeeCceEEEEECCC
Confidence 4568899999999999999999975431110 0000 011111 12567899999999
Q ss_pred CcCcHHHHHHHHHh----cCEEEEEEeCC-C--CcchhHHHHHHHHHH------cCCCEEEEEeCCCCCCCCh
Q 004311 150 HVDFTVEVERALRV----LDGAILVLCSV-G--GVQSQSITVDRQMRR------YEVPRLAFINKLDRMGADP 209 (762)
Q Consensus 150 ~~df~~~~~~al~~----aD~aIlVvDa~-~--gv~~qt~~~~~~~~~------~~~p~iiviNK~D~~~~~~ 209 (762)
+.+|...+..+++. +|++|+|+|+. . ........+...... .++|+++|+||+|+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp CGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 99999888888887 99999999998 3 222222222222221 4899999999999986653
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=5.4e-14 Score=161.64 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecc--------eEEEeecCee
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA--------ATSCAWKDYQ 141 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~--------~~~~~~~~~~ 141 (762)
.+..+|+++|.+|+|||||+++|....-.. . .....|.++... .......+..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~-~------------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~ 99 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDP-K------------------ESQTHGLNVVTKQAPNIKGLENDDELKECL 99 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------------------------CCCEEEEEGGGSGGGTTCSTTTTCE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCC-C------------------CCCccceEEEEeccccccceeecCCCceEE
Confidence 345689999999999999999996422100 0 000012222111 0011223688
Q ss_pred EEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcC--CCEEEEEeCCCCCC
Q 004311 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE--VPRLAFINKLDRMG 206 (762)
Q Consensus 142 i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~--~p~iiviNK~D~~~ 206 (762)
+++|||||+..|.......++.+|++|+|+|++.. ......+..+...+ +|+++|+||+|+..
T Consensus 100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 99999999999988888889999999999999865 34445555666544 99999999999854
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.46 E-value=3.6e-13 Score=140.29 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=82.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
+..+|+++|++|+|||||+++|+...... ..+ ..++|.......+.+++..++||||||+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~--------------~~~------~~~~t~~~~~~~~~~~~~~l~liDTpG~ 94 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR--------------VSP------FQAEGLRPVMVSRTMGGFTINIIDTPGL 94 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC--------------CCS------SCC-CCCCEEEEEEETTEEEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc--------------cCC------CCCcceeeEEEEEEECCeeEEEEECCCC
Confidence 45789999999999999999997543211 111 1556777777788899999999999999
Q ss_pred cCcHHHHH---HHHH------hcCEEEEEEeCCCC-cchhHHHHHHHHHHc-C----CCEEEEEeCCCCC
Q 004311 151 VDFTVEVE---RALR------VLDGAILVLCSVGG-VQSQSITVDRQMRRY-E----VPRLAFINKLDRM 205 (762)
Q Consensus 151 ~df~~~~~---~al~------~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~-~----~p~iiviNK~D~~ 205 (762)
.+|..... +.+. .+|++|+|+|.+.. ........+..+... + .|+++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 95 VEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 88753332 2232 78999999887653 334444555555442 2 4899999999985
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.45 E-value=2e-13 Score=135.65 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=78.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|+.|+|||||+++|+....... ..+.++.......+.+++ ..+.+|||||
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~---------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g 63 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCCSCEEEEEEEEETTEEEEEEEEECSS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 57899999999999999999975322110 001122222233445555 4678899999
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
+..|...+...++.+|++++|+|.......+....| ..+.. .+.|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp GGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred chhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 998877777788899999999999876554443333 22322 368899999999984
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.44 E-value=6.2e-13 Score=132.99 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
.+-.+|+++|++|+|||||+++|+.... ... + ....|.|.... .+.+++ .+.+|||||
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~---~---------------~~~~G~~~~~~--~~~~~~-~~~l~Dt~G 81 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKS-LAR---T---------------SKTPGRTQLIN--LFEVAD-GKRLVDLPG 81 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------------------------CCEE--EEEEET-TEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-ccc---c---------------cCCCccceeeE--EEEecC-CEEEEECcC
Confidence 3456899999999999999999942110 000 0 11245444322 233444 788999999
Q ss_pred CcC----------cHHHHHHHH---HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 HVD----------FTVEVERAL---RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~d----------f~~~~~~al---~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.+ |...+...+ +.+|++++|+|+..+.......+...+...++|.+++.||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 853 222233333 46899999999998877666667777778899999999999975
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=146.20 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=63.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (762)
..+|+++|++|+|||||+++|+...... .+ .......+..+++++......+.+.+ ..+++|||||
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~-------~~-----~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG 104 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYP-------ER-----VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------------------CEEEEEEEEC----CEEEEEEEEC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCC-------CC-----cccCCCcccCCceeEEEEEEEeecCCcccceEEEEecc
Confidence 3689999999999999999985321110 00 11111112223344433333344444 3799999999
Q ss_pred CcCc-------HHHHH-------HHHHhc-------------CEEEEEEeC-CCCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004311 150 HVDF-------TVEVE-------RALRVL-------------DGAILVLCS-VGGVQSQSITVDRQMRRYEVPRLAFINK 201 (762)
Q Consensus 150 ~~df-------~~~~~-------~al~~a-------------D~aIlVvDa-~~gv~~qt~~~~~~~~~~~~p~iiviNK 201 (762)
+.++ ...+. .+++.+ |+++++|+. ..+.......++..+ ..++|+|+|+||
T Consensus 105 ~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK 183 (361)
T 2qag_A 105 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAK 183 (361)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEEC
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEEC
Confidence 9443 22222 555544 357778876 566666555555544 367999999999
Q ss_pred CCCC
Q 004311 202 LDRM 205 (762)
Q Consensus 202 ~D~~ 205 (762)
+|+.
T Consensus 184 ~Dl~ 187 (361)
T 2qag_A 184 ADTL 187 (361)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9985
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.42 E-value=3.2e-13 Score=136.44 Aligned_cols=127 Identities=22% Similarity=0.256 Sum_probs=74.4
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceE----EE---------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT----SC--------- 135 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~----~~--------- 135 (762)
..++++|+++|++|+|||||+++|+.......+.+.+..... . ..|....+ ..|+++..... .+
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~-~-~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV-S-KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRL 103 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC-C-HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC-C-chhHHHHH-hCCCcEEEecCCceeecccHHHHHHH
Confidence 346899999999999999999999976543222222322110 0 01111111 11333111110 11
Q ss_pred -eecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 136 -AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 136 -~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+.+..+.+|||||+.+-.... -...+.+++|+|+..+... .|......++|.++|+||+|+.
T Consensus 104 ~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 104 KKFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GGGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 3456899999999952111000 0246889999999887432 2333444578999999999973
No 180
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.41 E-value=2.5e-13 Score=147.77 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCcc---ccccCChhhh---hhhcceeecce--------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMDLE---REKGITIQSAA-------- 132 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~---~~~~d~~~~e---~~~giTi~~~~-------- 132 (762)
.+.+.|+|+|++|+|||||+++|.... |...-.-..+.+... ....|....+ ...+..+....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 467899999999999999999997542 221111111111000 0000100000 11122221111
Q ss_pred --------EEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 133 --------TSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 133 --------~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
..+.+.++.+.||||||... .....+..+|++|+|+|+..+...+.... ...++|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----GVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----TSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----hHhhcCCEEEEECCCC
Confidence 11244678999999999654 23344689999999999987655443221 1134699999999998
Q ss_pred C
Q 004311 205 M 205 (762)
Q Consensus 205 ~ 205 (762)
.
T Consensus 230 ~ 230 (355)
T 3p32_A 230 E 230 (355)
T ss_dssp G
T ss_pred c
Confidence 4
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.41 E-value=2.2e-12 Score=134.93 Aligned_cols=117 Identities=14% Similarity=0.076 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (762)
...+|+++|++|+|||||+|+|+...... +. + ..++|.......+.+++..++||||||+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~-----~~---------~------~~~~t~~~~~~~~~~~~~~l~iiDTpG~ 97 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS-----IS---------P------FQSEGPRPVMVSRSRAGFTLNIIDTPGL 97 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC-----CC---------S------SSCCCSSCEEEEEEETTEEEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc-----cc---------C------CCCcceeeEEEEEeeCCeEEEEEECCCC
Confidence 45789999999999999999997532211 01 1 1455666666677888999999999999
Q ss_pred cCcH---HHHHHHHH------hcCEEEEEEeCCC-CcchhHHHHHHHHHHc-C----CCEEEEEeCCCCCCC
Q 004311 151 VDFT---VEVERALR------VLDGAILVLCSVG-GVQSQSITVDRQMRRY-E----VPRLAFINKLDRMGA 207 (762)
Q Consensus 151 ~df~---~~~~~al~------~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-~----~p~iiviNK~D~~~~ 207 (762)
.+|. ......+. .+|++|+|+|.+. .........+..+... + +|+++|+||+|+...
T Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 98 IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 7764 23333332 6999999988754 3444455555555432 3 699999999998643
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.40 E-value=1.3e-12 Score=154.00 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=54.9
Q ss_pred eeEEEEeCCCCcC---cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHHcCCCEEEEEeCCCCC
Q 004311 140 YQINIIDTPGHVD---FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 140 ~~i~liDTPG~~d---f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~~~~p~iiviNK~D~~ 205 (762)
..++||||||+.+ +...+..+++.+|++|+|+|+..+....+...|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4799999999765 4566778899999999999999988877777775 4455688999999999984
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.38 E-value=1.1e-12 Score=129.64 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=78.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCe--eEEEEeC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY--QINIIDT 147 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDT 147 (762)
+...+|+++|+.|+|||||+++|+....... ..+.++.......+.+++. .+.+|||
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~---------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt 85 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------------SKSTIGVEFATRSIQVDGKTIKAQIWDT 85 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS---------------------CCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCccceEEEEEEEEECCEEEEEEEEEC
Confidence 3457899999999999999999965322110 0022222333344555554 5567999
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (762)
||+.+|...+...++.+|++++|+|.......+....| ..+.. .+.|+++++||+|+.
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999887788888999999999998875443333323 22322 367899999999984
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.38 E-value=9.3e-13 Score=129.77 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=80.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (762)
....+|+++|+.|+|||||+++|+....... +. ....+++. .+.+..+.+|||||
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~~--------------~~~~~~~~-------~~~~~~~~l~Dt~G 100 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VV--------------SQEPLSAA-------DYDGSGVTLVDFPG 100 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------------------CCCCTTCSEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc----cc--------------cCCCceee-------eecCCeEEEEECCC
Confidence 4557899999999999999999975431110 00 00111121 12567899999999
Q ss_pred CcCcHHHHHHHHHh----cCEEEEEEeCC-CCcchhH-HHHHHHHHH-------cCCCEEEEEeCCCCCCCC-hhHHHHH
Q 004311 150 HVDFTVEVERALRV----LDGAILVLCSV-GGVQSQS-ITVDRQMRR-------YEVPRLAFINKLDRMGAD-PWKVLDQ 215 (762)
Q Consensus 150 ~~df~~~~~~al~~----aD~aIlVvDa~-~gv~~qt-~~~~~~~~~-------~~~p~iiviNK~D~~~~~-~~~~~~~ 215 (762)
+.+|...+..+++. +|++|+|+|+. ....... ...+..... .++|+++|+||+|+.... .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp CCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred CchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 99987777777665 89999999998 3222111 122222211 389999999999997654 4445555
Q ss_pred HHHHh
Q 004311 216 ARSKL 220 (762)
Q Consensus 216 i~~~l 220 (762)
+.+.+
T Consensus 181 l~~~l 185 (193)
T 2ged_A 181 LESEI 185 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=1.6e-13 Score=151.01 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=46.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe-----------------
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----------------- 136 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------------- 136 (762)
+|+|+|++|+|||||+|+|+... .. +.+ .+++|+........
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~-----~~~---------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~ 60 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VE-----IAN---------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEEECSCSSSCCSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Cc-----ccC---------------CCCcccCCceEEEeeccCCchHHhhhhcccc
Confidence 69999999999999999996433 11 000 12333333322211
Q ss_pred ----ec---CeeEEEEeCCCCcCcHHH-------HHHHHHhcCEEEEEEeCCCC
Q 004311 137 ----WK---DYQINIIDTPGHVDFTVE-------VERALRVLDGAILVLCSVGG 176 (762)
Q Consensus 137 ----~~---~~~i~liDTPG~~df~~~-------~~~al~~aD~aIlVvDa~~g 176 (762)
++ ...++||||||+.++... ...+++.+|++++|+|+.++
T Consensus 61 ~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp SSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 12 357999999999753221 12346899999999999875
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.36 E-value=5.1e-13 Score=145.29 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCc----------cc--------cccCChh--hh------hh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG----------VG--------AKMDSMD--LE------RE 123 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~----------~~--------~~~d~~~--~e------~~ 123 (762)
.....|+++|.+|+|||||+|+|+...-.....+.+..... .. .+++... .+ +-
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999999754321000000000000 00 0011111 01 11
Q ss_pred ----hcceeecceEEEeec-CeeEEEEeCCCCcC-------------cHHHHHHHHHhcC-EEEEEEeCCCCcchhHHH-
Q 004311 124 ----KGITIQSAATSCAWK-DYQINIIDTPGHVD-------------FTVEVERALRVLD-GAILVLCSVGGVQSQSIT- 183 (762)
Q Consensus 124 ----~giTi~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~al~~aD-~aIlVvDa~~gv~~qt~~- 183 (762)
.|+........+... ...++||||||..+ +...+..+++.++ ++++|+|+..+...+...
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 344333322333333 57899999999743 3445566676555 555677887777666553
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCC
Q 004311 184 VDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 184 ~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
+++.+...+.|+++|+||+|+..
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSC
T ss_pred HHHHhCcCCCceEEEeccccccC
Confidence 66666677899999999999864
No 187
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.34 E-value=6.5e-12 Score=133.12 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|.++|..|+|||||++++... .... ....-+.|+......+. ...+++||||||+.+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~--~~~~------------------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN--MQPL------------------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC--CCSG------------------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcC--CCCC------------------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhc
Confidence 3789999999999999876321 1000 00012334444333332 3478999999999999
Q ss_pred HH---HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH----HH--cCCCEEEEEeCCCCCCC
Q 004311 154 TV---EVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RR--YEVPRLAFINKLDRMGA 207 (762)
Q Consensus 154 ~~---~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~----~~--~~~p~iiviNK~D~~~~ 207 (762)
.. ....+++.++++|+|+|+++. .......|... .. .++|+++|.||+|+...
T Consensus 60 ~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 60 FEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred cchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 64 467889999999999999987 44444444332 21 37899999999999643
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.33 E-value=4.6e-12 Score=139.73 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=75.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (762)
+....|+|+|++|||||||+++|.. .... +.+. ..+|.......+.+++ ..++++|||
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg---~~~~---i~~~---------------~ftTl~p~~G~V~~~~~~~~~l~Dtp 213 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTR---AHPK---IAPY---------------PFTTLSPNLGVVEVSEEERFTLADIP 213 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCS---SCCE---ECCC---------------TTCSSCCEEEEEECSSSCEEEEEECC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHc---CCcc---ccCc---------------ccceecceeeEEEecCcceEEEEecc
Confidence 3456799999999999999999942 2111 1111 2334555555566665 789999999
Q ss_pred CCcC-------cHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004311 149 GHVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (762)
Q Consensus 149 G~~d-------f~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (762)
|+.+ +.....+.+..+|.++.|+|+......+....+++... .+.|.++++||+|+.
T Consensus 214 Gli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 214 GIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 9854 22334555677999999999971111122222223222 368999999999985
No 189
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.32 E-value=6.5e-13 Score=137.75 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.7
Q ss_pred hcCEEEEEEeCCCC--cchhHHHHH-HHH----HHcCCCEEEEEeCCCCC
Q 004311 163 VLDGAILVLCSVGG--VQSQSITVD-RQM----RRYEVPRLAFINKLDRM 205 (762)
Q Consensus 163 ~aD~aIlVvDa~~g--v~~qt~~~~-~~~----~~~~~p~iiviNK~D~~ 205 (762)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999876 444433333 222 23579999999999984
No 190
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.32 E-value=4.7e-12 Score=145.11 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=88.1
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcce------------------eec
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT------------------IQS 130 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giT------------------i~~ 130 (762)
.+...+|+|+|++|+|||||+|+|+...-.....+..........+......+...|.+ ...
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 34678999999999999999999986543200000000000000000000000000100 001
Q ss_pred ceEEEeecC---eeEEEEeCCCCcC-----------cHHHHHHHHHhcCEEEEEEeCCC-CcchhHHHHHHHHHHcCCCE
Q 004311 131 AATSCAWKD---YQINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCSVG-GVQSQSITVDRQMRRYEVPR 195 (762)
Q Consensus 131 ~~~~~~~~~---~~i~liDTPG~~d-----------f~~~~~~al~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~~p~ 195 (762)
....+.+.+ ..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..++..+...+.|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 111222222 4799999999976 77788889999999999999988 57778888888888788999
Q ss_pred EEEEeCCCCCC
Q 004311 196 LAFINKLDRMG 206 (762)
Q Consensus 196 iiviNK~D~~~ 206 (762)
++|+||+|+..
T Consensus 222 ilVlNK~Dl~~ 232 (550)
T 2qpt_A 222 RVVLNKADMVE 232 (550)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEECCCccC
Confidence 99999999964
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.30 E-value=3.3e-12 Score=149.38 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=85.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeee-------ee---cCCCcc--------ccccCChhh------h--h-
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH-------EV---RGRDGV--------GAKMDSMDL------E--R- 122 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~-------~v---~~~~~~--------~~~~d~~~~------e--~- 122 (762)
-.++.|+++|..++|||||+|+|+...-.....+ .+ ...... ..+.+..+. + .
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3568999999999999999999986432110000 00 000000 001111110 0 0
Q ss_pred ---hhcceeecceEEEeec-CeeEEEEeCCCCcC-------------cHHHHHHHH-HhcCEEEEEEeCCCCcchhHH-H
Q 004311 123 ---EKGITIQSAATSCAWK-DYQINIIDTPGHVD-------------FTVEVERAL-RVLDGAILVLCSVGGVQSQSI-T 183 (762)
Q Consensus 123 ---~~giTi~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~al-~~aD~aIlVvDa~~gv~~qt~-~ 183 (762)
..|++-......+.+. ...+.||||||... +...+..++ ..+|++++|+|+..+...+.. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 1233333333333333 35799999999754 222334444 468999999999998887776 6
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCC
Q 004311 184 VDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 184 ~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
++..+...+.|+|+|+||+|+..
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSC
T ss_pred HHHHHHhcCCCEEEEEeCcccCC
Confidence 88888888999999999999864
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.2e-11 Score=132.09 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=85.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
.-+|+|+|.||+|||||+|+|...... +.++ +++|++.....+.+.+.++.|+||||..
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~---------------v~~~------pftT~~~~~g~~~~~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE---------------AAEY------EFTTLVTVPGVIRYKGAKIQMLDLPGII 130 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC---------------GGGT------CSSCCCEEEEEEEETTEEEEEEECGGGC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc---------------ccCC------CCceeeeeeEEEEeCCcEEEEEeCCCcc
Confidence 457999999999999999999532111 1122 6889999999999999999999999986
Q ss_pred Cc-------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCCC
Q 004311 152 DF-------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRMG 206 (762)
Q Consensus 152 df-------~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~~p~iiviNK~D~~~ 206 (762)
+- ...+...++.||++++|+|+.+++.. ...+...+.. .+.|.++++||+|..+
T Consensus 131 ~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 131 DGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp CC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred CCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 42 34567788999999999999876432 2223333333 2568899999999854
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.24 E-value=5.9e-12 Score=136.45 Aligned_cols=62 Identities=27% Similarity=0.281 Sum_probs=39.6
Q ss_pred ecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+.++.+.||||||...-. ......+|++++|+|+..+...+... . .-...|.++|+||+|+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 467899999999974322 33467899999999998764333211 1 12467899999999984
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.20 E-value=3.4e-11 Score=124.90 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=46.1
Q ss_pred CeeEEEEeCCCCcCcHHH------HHHHHHhcCEEEEEEeCCCCcchhHHH-H----HHHHHHcCCCEEEEEeCCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVE------VERALRVLDGAILVLCSVGGVQSQSIT-V----DRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~------~~~al~~aD~aIlVvDa~~gv~~qt~~-~----~~~~~~~~~p~iiviNK~D~~~ 206 (762)
++.+.||||||..++... +..++.. +++|+|+|+.......... . .......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 368999999999776432 2234555 8889999987665544322 1 1223345899999999999853
No 195
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.20 E-value=2.7e-11 Score=136.35 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=82.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChh-hhhhhcceeecce-------------EE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------TS 134 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~~ 134 (762)
.+.++|+|+|++|+|||||+++|++..... .+..-++.........++.. .....++++.... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543211 11111111100011111111 1122344332211 11
Q ss_pred EeecCeeEEEEeCCCCcC----cHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCC
Q 004311 135 CAWKDYQINIIDTPGHVD----FTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA 207 (762)
Q Consensus 135 ~~~~~~~i~liDTPG~~d----f~~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~ 207 (762)
+.|+++.+.||||||... +..++....+ .+|.+++|+|+..|.. ....+..... .+|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 234789999999999863 3334433322 7899999999998754 2333333332 2785 89999999863
Q ss_pred ChhHHHHHHHHHhccc
Q 004311 208 DPWKVLDQARSKLRHH 223 (762)
Q Consensus 208 ~~~~~~~~i~~~l~~~ 223 (762)
.....++ +...++.+
T Consensus 255 ~~g~~l~-~~~~~g~P 269 (504)
T 2j37_W 255 KGGGALS-AVAATKSP 269 (504)
T ss_dssp CCTHHHH-HHHHHCCC
T ss_pred chHHHHH-HHHHhCCC
Confidence 2233333 45556543
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.14 E-value=1.6e-10 Score=125.96 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=52.3
Q ss_pred CeeEEEEeCCCCcCc-------------HHHHHHHHHhcCEEEEEEeCCCC-c-chhHHHHHHHHHHcCCCEEEEEeCCC
Q 004311 139 DYQINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCSVGG-V-QSQSITVDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 139 ~~~i~liDTPG~~df-------------~~~~~~al~~aD~aIlVvDa~~g-v-~~qt~~~~~~~~~~~~p~iiviNK~D 203 (762)
...+.||||||..++ ...+..+++.+|++|+|+|+... . ......+++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 568999999999887 66678889999999999987532 2 22334455555556889999999999
Q ss_pred CCC
Q 004311 204 RMG 206 (762)
Q Consensus 204 ~~~ 206 (762)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 864
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=5.9e-10 Score=120.23 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------- 139 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------- 139 (762)
.+|+|+|.+|+|||||+|+|......+ .+ .+++|+......+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v------~~---------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~ 61 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA------AN---------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPE 61 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc------cC---------------CCCceECceEEEEecCCcccceeeeeeccc
Confidence 369999999999999999997543111 00 13344444444444443
Q ss_pred ----eeEEEEeCCCCcCcHH-------HHHHHHHhcCEEEEEEeCCC
Q 004311 140 ----YQINIIDTPGHVDFTV-------EVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 140 ----~~i~liDTPG~~df~~-------~~~~al~~aD~aIlVvDa~~ 175 (762)
..++||||||+.++.. .....++.+|++++|+|+.+
T Consensus 62 ~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 62 RILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999988753 24567899999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=2.4e-10 Score=123.16 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=40.1
Q ss_pred eecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 136 AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 136 ~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+.+..+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..+|.++++||+|+.
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 34688999999999865322 23478999999999865532111 00001 134678889999974
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.99 E-value=1.7e-08 Score=109.56 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=56.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe----------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---------------- 136 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 136 (762)
.+|+|+|.+|+|||||+++|......+.. - ++.|+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~------~---------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN------Y---------------PFATIDKNVGVVPLEDERLYALQRTFAKG 60 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS------C---------------CGGGGSTTEEEEECCCHHHHHHHHHHCBT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC------C---------------CCceeccceeeEecChHHHHHHHHHhccc
Confidence 46999999999999999999765311110 0 1223322222221
Q ss_pred -----ecCeeEEEEeCCCCcCc-------HHHHHHHHHhcCEEEEEEeCCC
Q 004311 137 -----WKDYQINIIDTPGHVDF-------TVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 137 -----~~~~~i~liDTPG~~df-------~~~~~~al~~aD~aIlVvDa~~ 175 (762)
+.+..+.||||||+.++ .......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23467999999999775 2456678999999999999975
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.94 E-value=2.4e-09 Score=108.18 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhh--hcceeecc-e------------EE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGITIQSA-A------------TS 134 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~--~giTi~~~-~------------~~ 134 (762)
.+.++|+++|++|+|||||+++|+.......+...+..... ...|....+.. ..+.+... . ..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI--AKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT--THHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC--CCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHH
Confidence 46799999999999999999999876432222211211100 00111111000 00000000 0 00
Q ss_pred EeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 135 CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 135 ~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+...+..+.++||+|...-... .-...+..+.|+|+..+...... .....+.|.++|+||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 0122348999999995321100 01234667888887554322211 1122478999999999973
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.94 E-value=1.8e-09 Score=114.41 Aligned_cols=120 Identities=18% Similarity=0.305 Sum_probs=61.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeec--CeeEEEEeCCCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (762)
-+|+++|+.|+|||||+++|+...-.. ..+ +... ..+. ..++.+......+... ...+++|||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~-~~g-i~~~--------g~~~--~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYP-ERV-ISGA--------AEKI--ERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccC-CCC-cccC--------Cccc--CCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 578999999999999999985321111 000 0000 0000 0111111111111112 357899999998
Q ss_pred -------cCcHHHHH-------HHHHhcC-------------EEEEEEeCCC-CcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004311 151 -------VDFTVEVE-------RALRVLD-------------GAILVLCSVG-GVQSQSITVDRQMRRYEVPRLAFINKL 202 (762)
Q Consensus 151 -------~df~~~~~-------~al~~aD-------------~aIlVvDa~~-gv~~qt~~~~~~~~~~~~p~iiviNK~ 202 (762)
..|...+. ..++.+. +++++++.+. +.......+++.+. .++|+++|+||.
T Consensus 87 ~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~ 165 (301)
T 2qnr_A 87 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKA 165 (301)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCG
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeC
Confidence 44433332 4444433 3566666544 57776665555543 467999999999
Q ss_pred CCC
Q 004311 203 DRM 205 (762)
Q Consensus 203 D~~ 205 (762)
|+.
T Consensus 166 Dl~ 168 (301)
T 2qnr_A 166 DTL 168 (301)
T ss_dssp GGS
T ss_pred CCC
Confidence 985
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=3.9e-09 Score=116.42 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=61.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEE--eecC--eeEEEEeCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC--AWKD--YQINIIDTP 148 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~--~~~~--~~i~liDTP 148 (762)
-+|+|+|++|+|||||+++|+....... + .++ . ..+. .. |+......+ ...+ ..+++||||
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~--~--~~~---~-~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~ 96 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSP--E--YPG---P-SHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTP 96 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCC--C--CCS---C-C------------CCEEEEEECC------CEEEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCC--C--CCC---c-ccCC-----cc--ceeeeeEEEEEecCCcccceeeeech
Confidence 4689999999999999999953221100 0 000 0 0000 01 111111111 1122 478999999
Q ss_pred CCcCcHH------HH--------HHHH-----------Hh--cCEEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEe
Q 004311 149 GHVDFTV------EV--------ERAL-----------RV--LDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFIN 200 (762)
Q Consensus 149 G~~df~~------~~--------~~al-----------~~--aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~~p~iiviN 200 (762)
|..++.. .+ ..++ +. +|++|++++++ .+....+..+++.+. .++|+|+|+|
T Consensus 97 g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVin 175 (418)
T 2qag_C 97 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIA 175 (418)
T ss_dssp -----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEE
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEE
Confidence 9976521 11 1111 12 34566666665 678777766666665 4899999999
Q ss_pred CCCCC
Q 004311 201 KLDRM 205 (762)
Q Consensus 201 K~D~~ 205 (762)
|+|+.
T Consensus 176 K~Dll 180 (418)
T 2qag_C 176 KADTL 180 (418)
T ss_dssp STTSS
T ss_pred cccCc
Confidence 99985
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.90 E-value=1.7e-08 Score=111.98 Aligned_cols=223 Identities=14% Similarity=0.174 Sum_probs=119.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCc--eeeeeecCCCccccccCChh-hhhhhcceeecce-------------E
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI--HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------T 133 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i--~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~ 133 (762)
...+.|+++|+.|+||||++..|.+..... .+..-++.........+... .....|+.+.... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999997433211 11111111100000111000 1122343332211 1
Q ss_pred EEeecCeeEEEEeCCCCcCcHHHHHHH------HHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004311 134 SCAWKDYQINIIDTPGHVDFTVEVERA------LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (762)
Q Consensus 134 ~~~~~~~~i~liDTPG~~df~~~~~~a------l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (762)
.+.+.++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+.. ..++++ -+++||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEecCCCCc
Confidence 122357899999999987664444333 336789999999987632 22222222 224563 57999999752
Q ss_pred CChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHHH--HHHHHHHHh
Q 004311 207 ADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEK--RRELIELVS 284 (762)
Q Consensus 207 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~--~~~l~e~~~ 284 (762)
.. ..+.++...++.+... ++.+... .|+ ..|+ |..+.+.+... ...|+|.+.
T Consensus 255 -~~-g~~l~i~~~~~~Pi~~----iG~ge~v---~dl-----~~f~------------p~~~a~~l~g~gD~~~Lie~a~ 308 (433)
T 2xxa_A 255 -RG-GAALSIRHITGKPIKF----LGVGEKT---EAL-----EPFH------------PDRIASRILGMGDVLSLIEDIE 308 (433)
T ss_dssp -CC-THHHHHHHHHCCCEEE----EECSSSS---SCE-----EECC------------HHHHHHHHHCCCTTHHHHHHHH
T ss_pred -cH-HHHHHHHHHHCCCeEE----EecCCCc---hhh-----hhcC------------hHHHHHHHhCccchHHHHHHHH
Confidence 22 2333566666543321 1111111 111 1111 22333333221 233333333
Q ss_pred -----cCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceee
Q 004311 285 -----EVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPV 321 (762)
Q Consensus 285 -----~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv 321 (762)
+.+++++++|+++.+++.+++.+.+++...++.+-|+
T Consensus 309 ~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~ 350 (433)
T 2xxa_A 309 SKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASL 350 (433)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHH
T ss_pred HhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhh
Confidence 3367889999987789999999999988766655443
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=2.6e-10 Score=124.36 Aligned_cols=158 Identities=10% Similarity=0.038 Sum_probs=96.2
Q ss_pred cccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChh
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD 119 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~ 119 (762)
.+.+||.++.+...+.+.+..+ .+-++|+++|.+|+|||||+|+|+...........+..
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~--------~~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~------------ 197 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRY--------REGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY------------ 197 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHH--------HTTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE------------
T ss_pred EEEEECCCCCCHHHHHHHHHhh--------cccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecC------------
Confidence 4566777777776665544211 12368999999999999999999865210000000111
Q ss_pred hhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH-------HHHHHHH---HhcCEEEEEEeCCCCcchhHHHHHHHHH
Q 004311 120 LEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT-------VEVERAL---RVLDGAILVLCSVGGVQSQSITVDRQMR 189 (762)
Q Consensus 120 ~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~-------~~~~~al---~~aD~aIlVvDa~~gv~~qt~~~~~~~~ 189 (762)
.+|+|.......+ . ..+.++||||..+.. .+....+ +..|.+++++|+...........+.++.
T Consensus 198 ---~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~ 271 (369)
T 3ec1_A 198 ---FPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIK 271 (369)
T ss_dssp ---CTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEE
T ss_pred ---CCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEcc
Confidence 1566766544332 2 248999999985432 1223344 6789999999995432211111122333
Q ss_pred HcCCCEEEEEeCCCCCCCC-hhHHHHHHHHHhccc
Q 004311 190 RYEVPRLAFINKLDRMGAD-PWKVLDQARSKLRHH 223 (762)
Q Consensus 190 ~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~ 223 (762)
..++|+++++||+|..... .....+.+.+.+|..
T Consensus 272 ~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~ 306 (369)
T 3ec1_A 272 GGRRSFVCYMANELTVHRTKLEKADSLYANQLGEL 306 (369)
T ss_dssp SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT
T ss_pred CCCceEEEEecCCcccccccHHHHHHHHHHhcCCc
Confidence 4578999999999986533 456667777777753
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.77 E-value=7.5e-10 Score=120.69 Aligned_cols=158 Identities=10% Similarity=0.058 Sum_probs=93.1
Q ss_pred cccccccccccccccccccCCCCcchhhccCCceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCCh
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSM 118 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~ 118 (762)
.+.+||.++.+...+.+.+..+ ..-++|+++|.+|+|||||+|+|+...... .....+..
T Consensus 136 v~~iSA~~g~gi~~L~~~l~~~--------~~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~----------- 196 (368)
T 3h2y_A 136 VFLISAAKGQGIAELADAIEYY--------RGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH----------- 196 (368)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH--------HTTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC-----------
T ss_pred EEEEeCCCCcCHHHHHhhhhhh--------cccceEEEecCCCCChhHHHHHHHhhhccccccceecCC-----------
Confidence 4566777777776665544211 122679999999999999999998753211 11101111
Q ss_pred hhhhhhcceeecceEEEeecCeeEEEEeCCCCcCcH-------HHHHHH---HHhcCEEEEEEeCCCCcchhHHHHHHHH
Q 004311 119 DLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT-------VEVERA---LRVLDGAILVLCSVGGVQSQSITVDRQM 188 (762)
Q Consensus 119 ~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~-------~~~~~a---l~~aD~aIlVvDa~~gv~~qt~~~~~~~ 188 (762)
.+|+|.......+ .+ .+.++||||..+.. .+.... ....+.+++++|+...........+..+
T Consensus 197 ----~~gtT~~~~~~~~--~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l 269 (368)
T 3h2y_A 197 ----FPGTTLDLIDIPL--DE-ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYV 269 (368)
T ss_dssp ----CC----CEEEEES--SS-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE
T ss_pred ----CCCeecceEEEEe--cC-CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEe
Confidence 1566766544332 22 38999999985432 222222 2567889999998543221111112223
Q ss_pred HHcCCCEEEEEeCCCCCCCC-hhHHHHHHHHHhccc
Q 004311 189 RRYEVPRLAFINKLDRMGAD-PWKVLDQARSKLRHH 223 (762)
Q Consensus 189 ~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~ 223 (762)
...++|+++|+||+|..... ..+..+.+.+.+|..
T Consensus 270 ~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 270 SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred cCCCceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 34578999999999987543 456666777777753
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.77 E-value=6.7e-08 Score=106.63 Aligned_cols=218 Identities=15% Similarity=0.124 Sum_probs=105.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCccccccCChh-hhhhhcceeecc-------------eE
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSA-------------AT 133 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~-------------~~ 133 (762)
..+.|+++|++|+||||++..|.... |.-.-.-..+... ....+... .....|+.+... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r--~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR--PAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC--HHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc--hhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 35789999999999999999986322 2111000000000 00000000 001112222111 01
Q ss_pred EEeecCeeEEEEeCCCCcC------cHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 134 SCAWKDYQINIIDTPGHVD------FTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 134 ~~~~~~~~i~liDTPG~~d------f~~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+.+.++.+.||||||... +..++....+ ..|.++||+|+..|.. .........+.--+..+++||+|..
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence 1223578999999999754 3444433322 3599999999988633 2233333333335678999999985
Q ss_pred CCChhHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHH------HHHHHHH
Q 004311 206 GADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFV------AEKRREL 279 (762)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~------~~~~~~l 279 (762)
+.....+. +....+.+... ++.+.+.. | .....|+.+...+ ...++++
T Consensus 252 -a~~G~als-~~~~~g~Pi~f----ig~Ge~v~---d-----------------L~~f~p~~~~~~llg~gd~~~l~e~~ 305 (433)
T 3kl4_A 252 -AKGGGALS-AVVATGATIKF----IGTGEKID---E-----------------LETFNAKRFVSRILGMGDIESILEKV 305 (433)
T ss_dssp -SCHHHHHH-HHHHHTCEEEE----EECCSSSS---C-----------------EEECCHHHHHHHHHCSSHHHHHHHHH
T ss_pred -ccchHHHH-HHHHHCCCEEE----EECCCChH---h-----------------CccCCHHHHHHHhcCCchHHHHHHHH
Confidence 33333333 33334433211 11111110 0 1123356666643 3344444
Q ss_pred HHHHhcCC-HHHHHHHhcCC-CCChhHHHHHHHHHHhcCcc
Q 004311 280 IELVSEVD-DKLGDMFLSDE-PISSGDLEEAIRRATVARKF 318 (762)
Q Consensus 280 ~e~~~~~d-d~l~e~~l~~~-~~~~~~l~~~l~~~~~~~~~ 318 (762)
-+.+.+.+ ++++++|.+++ +++-+++.+.+++...++.+
T Consensus 306 ~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~ 346 (433)
T 3kl4_A 306 KGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPL 346 (433)
T ss_dssp HHC-------------------CCHHHHHHHHHHHHHCCSS
T ss_pred HHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCH
Confidence 44444444 67889999886 89999999999988777654
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.71 E-value=2.9e-08 Score=110.03 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCChhh-hhhhcceeecce--------E----EEe
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAA--------T----SCA 136 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~--------~----~~~ 136 (762)
..++|+++|++|+||||+++.|......- .+..-++.........+.... ....|+.+.... . .-.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999997543110 000001111000011111110 011122111100 0 001
Q ss_pred ecCeeEEEEeCCCCcCcHHHHHHHH------HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCC-C-EEEEEeCCCCCCCC
Q 004311 137 WKDYQINIIDTPGHVDFTVEVERAL------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-P-RLAFINKLDRMGAD 208 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~~~~~~al------~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~-p-~iiviNK~D~~~~~ 208 (762)
+.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+. ....+ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~-~~~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKA-FKEAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHH-HHTTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHH-HhhcccCCeEEEEeCCCCcc-c
Confidence 3678999999999876543333322 25799999999988742 2222222 22346 7 789999999853 2
Q ss_pred hhHHHHHHHHHhccc
Q 004311 209 PWKVLDQARSKLRHH 223 (762)
Q Consensus 209 ~~~~~~~i~~~l~~~ 223 (762)
....+ ++...++.+
T Consensus 254 ~g~~l-~~~~~~~~p 267 (432)
T 2v3c_C 254 GGGAL-SAVAETKAP 267 (432)
T ss_dssp THHHH-HHHHHSSCC
T ss_pred hHHHH-HHHHHHCCC
Confidence 22333 355666544
No 208
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.70 E-value=1e-08 Score=110.71 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=62.8
Q ss_pred cceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-----------chhHHHHHHHHHH---
Q 004311 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR--- 190 (762)
Q Consensus 125 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-----------~~qt~~~~~~~~~--- 190 (762)
..|+......+.+++..+.+|||+|+..|...+..+++.+|++|+|+|.++-. .......+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 44555556677888999999999999999999999999999999999998732 1223334444443
Q ss_pred -cCCCEEEEEeCCCC
Q 004311 191 -YEVPRLAFINKLDR 204 (762)
Q Consensus 191 -~~~p~iiviNK~D~ 204 (762)
.++|+|+|+||+|+
T Consensus 258 ~~~~piiLv~NK~DL 272 (353)
T 1cip_A 258 FTDTSIILFLNKKDL 272 (353)
T ss_dssp GTTSEEEEEEECHHH
T ss_pred ccCCcEEEEEECcCc
Confidence 47899999999997
No 209
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.63 E-value=4e-08 Score=106.45 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=54.7
Q ss_pred ceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-----------chhHHHHHHHHHH----
Q 004311 126 ITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR---- 190 (762)
Q Consensus 126 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-----------~~qt~~~~~~~~~---- 190 (762)
.|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-. .......|.....
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 3455555667788999999999999999999999999999999999998721 1223344444443
Q ss_pred cCCCEEEEEeCCCC
Q 004311 191 YEVPRLAFINKLDR 204 (762)
Q Consensus 191 ~~~p~iiviNK~D~ 204 (762)
.++|+|+|+||+|+
T Consensus 267 ~~~piILv~NK~DL 280 (362)
T 1zcb_A 267 SNVSIILFLNKTDL 280 (362)
T ss_dssp TTSEEEEEEECHHH
T ss_pred CCCCEEEEEEChhh
Confidence 36899999999997
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.58 E-value=6.9e-07 Score=98.14 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=66.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-eeEEEEeCCCCc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGHV 151 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~ 151 (762)
..|+|+|++|+|||||+|.|+.. ... ..| ....+..+..+ .++ .+.... ..++++|+||..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl---~~p----~~G---sI~~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI---GNE----EEG---AAKTGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC---CTT----STT---SCCCCC----C-CCE-------EEECSSCTTEEEEECCCGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCC---CCc----cCc---eEEECCeecce-eEE-------eccccccCCeeehHhhccc
Confidence 38999999999999999999642 110 001 00111111000 111 111122 268999999974
Q ss_pred Cc---HHHHHH--HHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 152 DF---TVEVER--ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 152 df---~~~~~~--al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
.- ..+... .+...|..++ +|+.. .+.|...+.+.+...++|+++|+||.|+
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 21 222222 2334455554 77755 4677777888888889999999999886
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.57 E-value=6e-08 Score=105.60 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC-------------
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------- 139 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------- 139 (762)
.+|+|+|.+|+|||||+|+|....- . +. ..+++|+......+.+.+
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~---~---~~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~ 81 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA---S---AE---------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPA 81 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC----------------------------------CCSEEEEECCCHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---c---cc---------------CCCccccCceeEEEEECCccceeeccccCcc
Confidence 4699999999999999999963211 0 01 114455555555544432
Q ss_pred ----eeEEEEeCCCCcCcHH-------HHHHHHHhcCEEEEEEeCCC
Q 004311 140 ----YQINIIDTPGHVDFTV-------EVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 140 ----~~i~liDTPG~~df~~-------~~~~al~~aD~aIlVvDa~~ 175 (762)
..+.||||||+..+.. .+...++.+|++++|+|+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3599999999987655 56788999999999999974
No 212
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=93.45 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=70.3
Q ss_pred CCCCeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCCeEEEcCeEEEeecCcccccccccCCCEEEE--ccc---
Q 004311 369 PDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--- 443 (762)
Q Consensus 369 ~~~p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--- 443 (762)
.++||.+.|..++. ..|++..|||.+|++++||+|.+.+.+.+.+|++|+. ..+++++|.|||.+++ .|+
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~----~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILS----DDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp ----CBEEEEEEEE-SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECS----SSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCEEEEEEEEEc-CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEE----CCEEeEEECCCCEEEEEEcCCCHH
Confidence 56899999999976 3499999999999999999999999999999999873 3468999999999997 777
Q ss_pred ccccCceeecCCCc
Q 004311 444 DCASGDTFTDGSVK 457 (762)
Q Consensus 444 ~~~~GdtL~~~~~~ 457 (762)
++..||+|++++++
T Consensus 78 di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 78 EILPGFILCDPNNL 91 (204)
T ss_dssp CCCTTCEEBCSSSC
T ss_pred HCccceEEECCCCC
Confidence 68899999987653
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.47 E-value=3.9e-07 Score=100.06 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC--eeEEEEeCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (762)
.+.|++|+|++|+|||||++.|+... + .+. .... ...+.+.......+...+ ..++++|+|
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l------~g~----~~~~-----~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--F------EGE----PATH-----TQPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C----------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--c------cCC----cCCC-----CCccceEeeEEEEeecCccccccchhhhh
Confidence 45679999999999999999996431 1 000 0000 012223322111122222 268999999
Q ss_pred CCcCc--------------HHHHHHHHHh---------------cC-EEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEE
Q 004311 149 GHVDF--------------TVEVERALRV---------------LD-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAF 198 (762)
Q Consensus 149 G~~df--------------~~~~~~al~~---------------aD-~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiv 198 (762)
|..+. ...+..++.. +| ++++|+|+..+....+..+++.+. .++|+|+|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~V 182 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPI 182 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEE
Confidence 98542 1112222221 12 466788999999888888887776 78999999
Q ss_pred EeCCCCCCCC-hhHHHHHHHHHhccc
Q 004311 199 INKLDRMGAD-PWKVLDQARSKLRHH 223 (762)
Q Consensus 199 iNK~D~~~~~-~~~~~~~i~~~l~~~ 223 (762)
+||+|....+ .....+.+++.+...
T Consensus 183 i~KtD~Lt~~E~~~l~~~I~~~L~~~ 208 (427)
T 2qag_B 183 IAKADAISKSELTKFKIKITSELVSN 208 (427)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHBTT
T ss_pred EcchhccchHHHHHHHHHHHHHHHHc
Confidence 9999986432 233445555545443
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.45 E-value=1e-05 Score=89.19 Aligned_cols=219 Identities=16% Similarity=0.107 Sum_probs=106.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc-eeeeeecCCCccccccCCh-hhhhhhcceeecce-------------EEE
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSM-DLEREKGITIQSAA-------------TSC 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~-~~e~~~giTi~~~~-------------~~~ 135 (762)
+.+.|+++|.+|+||||++..|......- .+..-+..........+.. ......|+.+.... ..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999997432111 0111011100000000000 00011233221110 011
Q ss_pred eecCeeEEEEeCCCCcCcHH----HHH--HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCCh
Q 004311 136 AWKDYQINIIDTPGHVDFTV----EVE--RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 209 (762)
Q Consensus 136 ~~~~~~i~liDTPG~~df~~----~~~--~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~ 209 (762)
..+++.+.||||||...... ++. .....+|.++||+||..|.. ...........--+..+++||+|....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSCSS--
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCccc--
Confidence 22468999999999654332 221 22345799999999988633 223333333333345799999998532
Q ss_pred hHHHHHHHHHhccceeeeeecCCCcCcccceeecccceeEEeeCCCCCeEEecCCChhhHHHHHH--HHHHHHHHHhc--
Q 004311 210 WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAE--KRRELIELVSE-- 285 (762)
Q Consensus 210 ~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~--~~~~l~e~~~~-- 285 (762)
....-++....+.+...+ +.+.+ +-|+. .--|+.+...+.. ....|+|.+.+
T Consensus 255 gG~~ls~~~~~g~PI~fi----g~Ge~---vddL~-----------------~f~~~~~~~~llg~gd~~~l~e~~~~~~ 310 (443)
T 3dm5_A 255 GGGALSAVAATGAPIKFI----GTGEK---IDDIE-----------------PFDPPRFVSRLLGLGDIQGLLEKFKELE 310 (443)
T ss_dssp HHHHHHHHHTTCCCEEEE----ECSSS---TTCEE-----------------ECCHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHCCCEEEE----EcCCC---hHHhh-----------------hCCHHHHHHHHcCCCcHHHHHHHHHHhh
Confidence 222333444444332211 11111 11110 1123444444332 12334443332
Q ss_pred --CC--HHHHHHHhcCCCCChhHHHHHHHHHHhcCcc
Q 004311 286 --VD--DKLGDMFLSDEPISSGDLEEAIRRATVARKF 318 (762)
Q Consensus 286 --~d--d~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~ 318 (762)
.+ .++.+++.++ .++-+++.+.+++...++.+
T Consensus 311 ~~~~~~~~~~~k~~~~-~f~l~d~~~q~~~~~kmg~~ 346 (443)
T 3dm5_A 311 KEVEIKEEDIERFLRG-KFTLKDMYAQLEAMRKMGPL 346 (443)
T ss_dssp TTHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCC-
T ss_pred hhhHHHHHHHHHHhhC-CcCHHHHHHHHHHHHhccCH
Confidence 11 2356666554 59999999998887666543
No 215
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.41 E-value=4.2e-07 Score=97.08 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=64.1
Q ss_pred hcceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCC----------C-cchhHHHHHHHHHH--
Q 004311 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG----------G-VQSQSITVDRQMRR-- 190 (762)
Q Consensus 124 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~----------g-v~~qt~~~~~~~~~-- 190 (762)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ . -.......|.....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4456666777788899999999999999999999999999999999999972 1 11223344444443
Q ss_pred --cCCCEEEEEeCCCCC
Q 004311 191 --YEVPRLAFINKLDRM 205 (762)
Q Consensus 191 --~~~p~iiviNK~D~~ 205 (762)
.++|+++|+||+|+.
T Consensus 225 ~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred ccCCCeEEEEEECchhh
Confidence 478999999999973
No 216
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.40 E-value=4.7e-07 Score=96.35 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=62.1
Q ss_pred hcceeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCC-------CCcc----hhHHHHHHHHHH--
Q 004311 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSV-------GGVQ----SQSITVDRQMRR-- 190 (762)
Q Consensus 124 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~-------~gv~----~qt~~~~~~~~~-- 190 (762)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-. ......|.....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 345666666778889999999999999999999999999999999999765 2111 123344444433
Q ss_pred --cCCCEEEEEeCCCC
Q 004311 191 --YEVPRLAFINKLDR 204 (762)
Q Consensus 191 --~~~p~iiviNK~D~ 204 (762)
.++|+++|+||+|+
T Consensus 231 ~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDL 246 (327)
T ss_dssp GGTTCEEEEEEECHHH
T ss_pred ccCCceEEEEEECchh
Confidence 47899999999997
No 217
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.35 E-value=4.6e-07 Score=99.03 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=60.3
Q ss_pred eeecceEEEeecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCC----------Ccch-hHHHHHHHHHH----c
Q 004311 127 TIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG----------GVQS-QSITVDRQMRR----Y 191 (762)
Q Consensus 127 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~----------gv~~-qt~~~~~~~~~----~ 191 (762)
|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-.. .....+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444555677888999999999999999999999999999999999987 2211 22333444433 3
Q ss_pred CCCEEEEEeCCCC
Q 004311 192 EVPRLAFINKLDR 204 (762)
Q Consensus 192 ~~p~iiviNK~D~ 204 (762)
++|+++|.||+|+
T Consensus 284 ~~piiLvgNK~DL 296 (402)
T 1azs_C 284 TISVILFLNKQDL 296 (402)
T ss_dssp SCCEEEEEECHHH
T ss_pred CCeEEEEEEChhh
Confidence 6899999999997
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.35 E-value=1.9e-06 Score=89.51 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
-|++++|+.|+|||||++.|+...... .|.+.-.. . +.......++++...... .-...++++|+||..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g--~---~i~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNRE--E---KIPKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------------CCCCCSCCEEEESCC-------CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCC--c---ccCcceeeeeeEEEeecC---CCcCCceEEechhhhh
Confidence 479999999999999999997543221 11111000 0 000000011121111110 0113689999999743
Q ss_pred cH------HH--------HHHHH--------------HhcCEEEEEEeC-CCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004311 153 FT------VE--------VERAL--------------RVLDGAILVLCS-VGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 153 f~------~~--------~~~al--------------~~aD~aIlVvDa-~~gv~~qt~~~~~~~~~~~~p~iiviNK~D 203 (762)
.. .. ....+ ..++++++++|. .+|....+..+++.+.+. +++|+|+||+|
T Consensus 73 ~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 73 QINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp CSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGG
T ss_pred hcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccc
Confidence 10 01 11111 125888999995 489999998888888776 99999999999
Q ss_pred CCCCC-hhHHHHHHHHHhc
Q 004311 204 RMGAD-PWKVLDQARSKLR 221 (762)
Q Consensus 204 ~~~~~-~~~~~~~i~~~l~ 221 (762)
....+ .....+.+++.+.
T Consensus 152 ~lt~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 152 TMTLEEKSEFKQRVRKELE 170 (270)
T ss_dssp GSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 87532 2233444444443
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=1.1e-06 Score=95.75 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=62.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecC------------
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------ 139 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 139 (762)
-..|+|+|++|+|||||+|+|....... +.+ .+++|+......+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~-----~~~---------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~ 79 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGN-----PAN---------------YPYATIDPEEAKVAVPDERFDWLCEAYKP 79 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTS-----TTC---------------CSSCCCCTTEEEEEECCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc-----ccC---------------CCceeecceeeeeeeCCcchhhhhhhccc
Confidence 4579999999999999999997532101 011 15566666666666654
Q ss_pred -----eeEEEEeCCCCcC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004311 140 -----YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 140 -----~~i~liDTPG~~d-------f~~~~~~al~~aD~aIlVvDa~~ 175 (762)
..+.+|||||... +.......++.+|+++.|+|+.+
T Consensus 80 ~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999754 44567788899999999999975
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.28 E-value=1.8e-06 Score=84.76 Aligned_cols=59 Identities=12% Similarity=0.051 Sum_probs=38.2
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH----HHHH----cCCCEEEEEeCC-CCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR----QMRR----YEVPRLAFINKL-DRMGA 207 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~----~~~~----~~~p~iiviNK~-D~~~~ 207 (762)
|+..+...|..++..+|++|+|||+++......+.-+. .+.. .++|++|+.||. |++++
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 77888889999999999999999998763323433332 1111 478999999995 77654
No 221
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.27 E-value=6.8e-07 Score=96.44 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=50.2
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCC----------CCc-chhHHHHHHHHHH----cCCCEEEEEeCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSV----------GGV-QSQSITVDRQMRR----YEVPRLAFINKL 202 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~----------~gv-~~qt~~~~~~~~~----~~~p~iiviNK~ 202 (762)
+...+.+|||+|+..|...+..+++.+|++|+|+|.+ ..- .......|..... .++|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999987 111 1222334444432 468999999999
Q ss_pred CC
Q 004311 203 DR 204 (762)
Q Consensus 203 D~ 204 (762)
|+
T Consensus 261 DL 262 (354)
T 2xtz_A 261 DI 262 (354)
T ss_dssp HH
T ss_pred ch
Confidence 97
No 222
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.25 E-value=5.8e-07 Score=95.13 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=50.6
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhHHH-HHHHHHHcCCCEEEEEeCCCCC
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSIT-VDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt~~-~~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+++||| +.+|...+..+++.+|++|+|+|+++.. ...... .+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7999999 8888888888999999999999999765 333333 3334455789999999999985
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=1.9e-06 Score=98.58 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEee-------cCeeE
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQI 142 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------~~~~i 142 (762)
..+..|+|+|.+|+|||||+|+|+.....+. + .|+|.......+.| .+..+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~----~------------------~~tt~~~T~gi~~~~~~~~~~~~~~i 93 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS----L------------------GSTVQSHTKGIWMWCVPHPKKPGHIL 93 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSC----C------------------CCSSSCCCCSEEEEEEECSSSTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccc----c------------------CCCCCCceeEEEEeecccccCCCceE
Confidence 3567899999999999999999965332111 1 11111111111222 46789
Q ss_pred EEEeCCCCcCcHH------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc
Q 004311 143 NIIDTPGHVDFTV------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 191 (762)
Q Consensus 143 ~liDTPG~~df~~------~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~ 191 (762)
.||||||..+... ....++...-..++|+|+..++..+...++..+.+.
T Consensus 94 ~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 94 VLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp EEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred EEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 9999999864321 122223332223788899999999988877776554
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.11 E-value=2.9e-06 Score=89.37 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=72.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCccccccCCh-hhhhhhcceeecce-------------EE
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSM-DLEREKGITIQSAA-------------TS 134 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~-~~e~~~giTi~~~~-------------~~ 134 (762)
.+.|+++|+.|+||||++..|.... |.-.-....+... ....+.. ......|+.+.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r--~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR--PAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS--SHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--HHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999986432 2111110011110 0000000 00111233322110 01
Q ss_pred EeecCeeEEEEeCCCCcC--cHHHHH------HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCC
Q 004311 135 CAWKDYQINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (762)
Q Consensus 135 ~~~~~~~i~liDTPG~~d--f~~~~~------~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~ 205 (762)
+.++++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+.....+.... .+| ..+++||+|..
T Consensus 176 ~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 123678999999999877 433322 345678999999999865 233333333332 577 67899999974
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.10 E-value=2.5e-06 Score=89.29 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=43.9
Q ss_pred EEeCCCCc-CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 144 IIDTPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 144 liDTPG~~-df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+=+-|||. ....++...+..+|+++.|+||..+.......+.+.+ .++|.++|+||+|+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 33579997 5678889999999999999999988776543333333 589999999999985
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=81.63 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=42.9
Q ss_pred CCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHH---HH-cCCCEEEEEeC-CCCCCC
Q 004311 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD----RQM---RR-YEVPRLAFINK-LDRMGA 207 (762)
Q Consensus 148 PG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~----~~~---~~-~~~p~iiviNK-~D~~~~ 207 (762)
.|+..+...+..++..+|++|+|||+++........-+ ..+ .. .++|++|+.|| -|++++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 47888999999999999999999999876432233221 222 11 58999999997 588654
No 227
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.98 E-value=4.9e-05 Score=74.89 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=59.7
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc-----CCCEEEEEeCCCCCCCChhHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-----EVPRLAFINKLDRMGADPWKVL 213 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~~p~iiviNK~D~~~~~~~~~~ 213 (762)
.+.+.+||||+.. ......++..+|.+|+++.....- ..+...++.+.+. ++++.+|+||+|...... +.+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~-~~~ 150 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATML-NVL 150 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEE-HHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHH-HHH
Confidence 5899999999987 356778899999999999998777 7777777777654 367789999999643222 333
Q ss_pred HHHHHHhccce
Q 004311 214 DQARSKLRHHC 224 (762)
Q Consensus 214 ~~i~~~l~~~~ 224 (762)
.+..+.++...
T Consensus 151 ~~~l~~~~~~v 161 (206)
T 4dzz_A 151 KESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHTCCB
T ss_pred HHHHHHcCCce
Confidence 44444455433
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.95 E-value=3.4e-06 Score=88.23 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=48.5
Q ss_pred cccccccccccccccccccCCCCcchhh------ccCCceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc
Q 004311 40 NFHLQSRQFSAGGNLARAKDDKEPWWKE------SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (762)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (762)
.+.+|+.++.+...+.+.+..+.+.... ...+..+|+++|.+|+|||||+|+|+...... +.
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-----~~------- 149 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAK-----TG------- 149 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceee-----cC-------
Confidence 3456667777766655443222111000 01234679999999999999999997432111 11
Q ss_pred ccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
..+|+|....... . +..+.+|||||..+
T Consensus 150 --------~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 150 --------DRPGITTSQQWVK--V-GKELELLDTPGILW 177 (282)
T ss_dssp -----------------CCEE--E-TTTEEEEECCCCCC
T ss_pred --------CCCCeeeeeEEEE--e-CCCEEEEECcCcCC
Confidence 1256666554322 2 45799999999853
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.88 E-value=2.5e-05 Score=84.93 Aligned_cols=63 Identities=16% Similarity=0.009 Sum_probs=41.0
Q ss_pred eEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 141 ~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
.+.-+|+| +.+|...+....+.+|++|+|+|+.+........+.+.+ .++|+++|+||+|+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 34444554 778988888888999999999999886543322222222 3789999999999853
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.83 E-value=8.5e-06 Score=86.11 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=40.4
Q ss_pred CcCcHHHHHHHHHhcCEEEEEEeCCCCc-chhH-HHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 150 HVDFTVEVERALRVLDGAILVLCSVGGV-QSQS-ITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 150 ~~df~~~~~~al~~aD~aIlVvDa~~gv-~~qt-~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
+..|......+++.+|++++|+|++++. .... .+.+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 3444444445789999999999998764 4433 233445566899999999999985
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.75 E-value=9.3e-06 Score=83.92 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=39.1
Q ss_pred CCCCcCc-HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004311 147 TPGHVDF-TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 147 TPG~~df-~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (762)
-|||... ..++...+..+|++|.|+||..+.......+- .+ ++|+++|+||+|+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIA 59 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGS
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCC
Confidence 3899643 46889999999999999999987665432221 22 89999999999985
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.62 E-value=7.6e-05 Score=81.02 Aligned_cols=56 Identities=14% Similarity=-0.116 Sum_probs=38.8
Q ss_pred CCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 149 G~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
...+|...+....+.+|++|+|+|+.+........+.+. ..++|+++|+||+|+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCC
Confidence 346788888888889999999999987421111111111 13789999999999853
No 233
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.59 E-value=2.6e-05 Score=80.58 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 152 (762)
.+++++|.+|+|||||+|+|+...... +. ...|+|...... .. +..+.+|||||..+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-----~~---------------~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-----VG---------------AQPGITKGIQWF--SL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------------------------CCSCEE--EC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-----cC---------------CCCCCccceEEE--Ee-CCCEEEEECCCccc
Confidence 589999999999999999997432110 00 114556554322 22 35789999999875
Q ss_pred c
Q 004311 153 F 153 (762)
Q Consensus 153 f 153 (762)
.
T Consensus 157 ~ 157 (262)
T 3cnl_A 157 K 157 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.54 E-value=0.00025 Score=75.29 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=47.8
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHH------------HhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERAL------------RVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKL 202 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al------------~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~-iiviNK~ 202 (762)
.++.+.||||||...........+ ..+|.+++|+|+..+ .. .+.++..+ ..++ =+++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~---~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QN---GVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HH---HHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HH---HHHHHHHHhhcCCCcEEEEeCC
Confidence 468999999999866433222222 127899999999854 22 22333333 2444 4889999
Q ss_pred CCCCCChhHHHHHHHHHhccce
Q 004311 203 DRMGADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 203 D~~~~~~~~~~~~i~~~l~~~~ 224 (762)
|.... . ..+.++...++.+.
T Consensus 265 d~~~~-~-g~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 265 DSTSK-G-GIGLAIKELLNIPI 284 (320)
T ss_dssp GGCSC-T-THHHHHHHHHCCCE
T ss_pred CCCCc-h-hHHHHHHHHHCcCE
Confidence 97432 2 24445555666443
No 235
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.50 E-value=0.00019 Score=71.39 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=59.1
Q ss_pred cCeeEEEEeCCCC-cCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc-CCCEEEEEeCCCCCC-CChhHHHH
Q 004311 138 KDYQINIIDTPGH-VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPRLAFINKLDRMG-ADPWKVLD 214 (762)
Q Consensus 138 ~~~~i~liDTPG~-~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~~p~iiviNK~D~~~-~~~~~~~~ 214 (762)
..+.+.+||||+. ... .+..++..+|.+|+++.+...-...+...++.+... +.+..+++|++|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 4689999999997 543 456788999999999998766556666777777663 778889999999754 32233333
Q ss_pred HHHHHhccc
Q 004311 215 QARSKLRHH 223 (762)
Q Consensus 215 ~i~~~l~~~ 223 (762)
.+.+ ++..
T Consensus 144 ~l~~-~g~~ 151 (209)
T 3cwq_A 144 LLTT-AGLP 151 (209)
T ss_dssp HHHH-TTCC
T ss_pred HHHH-cCCc
Confidence 3433 5543
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.48 E-value=0.00021 Score=78.61 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCcccc-ccCChh-hhhhhcceeecceE----------E---E
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA-KMDSMD-LEREKGITIQSAAT----------S---C 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~-~~d~~~-~e~~~giTi~~~~~----------~---~ 135 (762)
..+.|+++|+.|+||||++..|..........--+-+.+.... ..+... .....|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999988643211100000111110000 000000 01112332221100 0 1
Q ss_pred eecCeeEEEEeCCCCcCcHHHHH------HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCC
Q 004311 136 AWKDYQINIIDTPGHVDFTVEVE------RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGAD 208 (762)
Q Consensus 136 ~~~~~~i~liDTPG~~df~~~~~------~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~ 208 (762)
...++.+.||||||......... ..+-.+|.+++|+|+..+. ......+... ..++ .-+++||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~-~~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFD-EKVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHH-HHTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHH-hcCCceEEEEeCcCCcc-c
Confidence 12578999999999764432221 1223589999999997652 2222222222 2355 467999999742 2
Q ss_pred hhHHHHHHHHHhccc
Q 004311 209 PWKVLDQARSKLRHH 223 (762)
Q Consensus 209 ~~~~~~~i~~~l~~~ 223 (762)
.. ...++...++.+
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233355555544
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.46 E-value=0.00018 Score=76.67 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCccc-cccCChh-hhhhhcceeecceEEE--------
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVG-AKMDSMD-LEREKGITIQSAATSC-------- 135 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~~~~-------- 135 (762)
.+-..|+++|+.|+|||||+..|.... |.+.- .+.+... ...+... .-+..|+.+.......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l----~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI----AASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE----EEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE----EeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 345679999999999999999986432 22211 1110000 0000000 0111232221110000
Q ss_pred -----eecCeeEEEEeCCCCcC----cHHHHHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 136 -----AWKDYQINIIDTPGHVD----FTVEVERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 136 -----~~~~~~i~liDTPG~~d----f~~~~~~a--l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
...++.+.++||+|... +..++... .-..|-.++++|+..+. +.....+...+.--..++++||+|.
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 11356788999999743 33333221 22479999999988762 2333333333222234889999997
Q ss_pred C
Q 004311 205 M 205 (762)
Q Consensus 205 ~ 205 (762)
.
T Consensus 281 ~ 281 (328)
T 3e70_C 281 D 281 (328)
T ss_dssp C
T ss_pred c
Confidence 3
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.41 E-value=0.00029 Score=81.55 Aligned_cols=69 Identities=12% Similarity=0.207 Sum_probs=40.8
Q ss_pred CeeEEEEeCCCCcCc---------HHHHHHHH----Hhc-CEEEEEEeCCCCcchh-HHHHHHHHHHcCCCEEEEEeCCC
Q 004311 139 DYQINIIDTPGHVDF---------TVEVERAL----RVL-DGAILVLCSVGGVQSQ-SITVDRQMRRYEVPRLAFINKLD 203 (762)
Q Consensus 139 ~~~i~liDTPG~~df---------~~~~~~al----~~a-D~aIlVvDa~~gv~~q-t~~~~~~~~~~~~p~iiviNK~D 203 (762)
.-.+.|+|.||...- ...+...+ ... ..+++++++......+ ...+++.+...+.+.|+|+||+|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 357999999986321 22332222 222 5666777765543322 24445555556889999999999
Q ss_pred CCCC
Q 004311 204 RMGA 207 (762)
Q Consensus 204 ~~~~ 207 (762)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 8743
No 239
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.41 E-value=0.00063 Score=68.90 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=61.9
Q ss_pred ecCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChhHHHHH
Q 004311 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQ 215 (762)
Q Consensus 137 ~~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~ 215 (762)
...+.+.|||||+.... ....++..+|.+|+|+++...-......+.+.+...+++ +.+++||.+. ....++
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~ 201 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKL 201 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHH
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHH
Confidence 35689999999987653 456788999999999998655445555666666777765 5799999983 345677
Q ss_pred HHHHhccceeeeeec
Q 004311 216 ARSKLRHHCAAVQVP 230 (762)
Q Consensus 216 i~~~l~~~~~~~~~p 230 (762)
+.+.++..+....+|
T Consensus 202 ~~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 202 IKKHLPEDKILGIIP 216 (254)
T ss_dssp HHHHSCGGGEEEEEE
T ss_pred HHHHhcCCccccccc
Confidence 777776433333444
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.40 E-value=0.00034 Score=77.84 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCcccc-ccCChh-hhhhhcceeecceEE----------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGA-KMDSMD-LEREKGITIQSAATS---------- 134 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~~-~~d~~~-~e~~~giTi~~~~~~---------- 134 (762)
.-..|+|+|..|+|||||+..|.... |.+. +.+++.+.. ..+... ....+++.+-.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~----l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM----LAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE----EECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE----EecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 34579999999999999999986432 2221 111211000 000000 001233332211100
Q ss_pred ---EeecCeeEEEEeCCCCcCcHH----HH---HHHHH-----hcCEEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEEE
Q 004311 135 ---CAWKDYQINIIDTPGHVDFTV----EV---ERALR-----VLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLAF 198 (762)
Q Consensus 135 ---~~~~~~~i~liDTPG~~df~~----~~---~~al~-----~aD~aIlVvDa~~gv~~qt~~~~~~~~-~~~~p~iiv 198 (762)
....++.+.||||+|...... ++ .+.++ ..+-++||+|+..|... ....+... ..++ ..++
T Consensus 368 l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~i-tgvI 444 (503)
T 2yhs_A 368 IQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGL-TGIT 444 (503)
T ss_dssp HHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCC-SEEE
T ss_pred HHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCC-CEEE
Confidence 012467899999999854322 22 22222 14578999999877321 22222222 2233 3678
Q ss_pred EeCCCCCCCChhHHHHHHHHHhcc
Q 004311 199 INKLDRMGADPWKVLDQARSKLRH 222 (762)
Q Consensus 199 iNK~D~~~~~~~~~~~~i~~~l~~ 222 (762)
+||+|.. +. -..+-.+...++.
T Consensus 445 lTKLD~t-ak-gG~~lsi~~~~~~ 466 (503)
T 2yhs_A 445 LTKLDGT-AK-GGVIFSVADQFGI 466 (503)
T ss_dssp EECGGGC-SC-CTHHHHHHHHHCC
T ss_pred EEcCCCc-cc-ccHHHHHHHHHCC
Confidence 9999963 22 2234444445553
No 241
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.32 E-value=0.00082 Score=70.39 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=57.5
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH------cCCCEE-EEEeCCCCCCCChhH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YEVPRL-AFINKLDRMGADPWK 211 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~~ 211 (762)
.+.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+.. .+++++ +|+|+.|........
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 231 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKS 231 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHH
Confidence 478999999997653 34667788999999999876555555555544443 366754 899999975433345
Q ss_pred HHHHHHHHhcc
Q 004311 212 VLDQARSKLRH 222 (762)
Q Consensus 212 ~~~~i~~~l~~ 222 (762)
.++++.+.++.
T Consensus 232 ~~~~~~~~~~~ 242 (298)
T 2oze_A 232 NLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 67777777764
No 242
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.25 E-value=0.00028 Score=74.35 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCccc-cccCChh-hhhhhcceeecce-------------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVG-AKMDSMD-LEREKGITIQSAA------------- 132 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~------------- 132 (762)
....|+++|++|+||||++..|.... +.... +.+.+.+. ...+... .-...|+.+-...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~---lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV---LAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE---EEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE---EEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45679999999999999999886432 21101 11110000 0000000 0011233221100
Q ss_pred EEEeecCeeEEEEeCCCCcCcHHHHH-------HHHH-----hcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEE
Q 004311 133 TSCAWKDYQINIIDTPGHVDFTVEVE-------RALR-----VLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFI 199 (762)
Q Consensus 133 ~~~~~~~~~i~liDTPG~~df~~~~~-------~al~-----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iivi 199 (762)
......++.+.|+||||.......+. +.+. .+|.+++|+|+..+. ......+...+ ..+ .-+++
T Consensus 180 ~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~-~~~i~gvVl 256 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKE-AVNVTGIIL 256 (306)
T ss_dssp HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHH-HSCCCEEEE
T ss_pred HHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEE
Confidence 00012467899999999754433322 1221 278899999997441 12222222222 233 35778
Q ss_pred eCCCCCCCChhHHHHHHHHHhccce
Q 004311 200 NKLDRMGADPWKVLDQARSKLRHHC 224 (762)
Q Consensus 200 NK~D~~~~~~~~~~~~i~~~l~~~~ 224 (762)
||+|.. +..- .+-++...++.+.
T Consensus 257 Tk~D~~-~~gG-~~l~~~~~~~~Pi 279 (306)
T 1vma_A 257 TKLDGT-AKGG-ITLAIARELGIPI 279 (306)
T ss_dssp ECGGGC-SCTT-HHHHHHHHHCCCE
T ss_pred eCCCCc-cchH-HHHHHHHHHCCCE
Confidence 999974 2222 2445555555443
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.22 E-value=0.0012 Score=69.60 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=71.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhh---hhhcceeecceEE----------E--
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLE---REKGITIQSAATS----------C-- 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e---~~~giTi~~~~~~----------~-- 135 (762)
+-..|+|+|+.|||||||++.|......-...-.+.+.+... .....+.. +.+++.+-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r-~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC-hhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 356899999999999999999964321100000011111000 00000000 1122222111000 0
Q ss_pred -eecCeeEEEEeCCCCcCcHH----HH---HHHH-----HhcCEEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEEEEeC
Q 004311 136 -AWKDYQINIIDTPGHVDFTV----EV---ERAL-----RVLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLAFINK 201 (762)
Q Consensus 136 -~~~~~~i~liDTPG~~df~~----~~---~~al-----~~aD~aIlVvDa~~gv~~qt~~~~~~~~-~~~~p~iiviNK 201 (762)
...++.+.++||+|..+... +. ..++ ...+.+++++|+..+.. ....+.... ..++ .++++||
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh 256 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTK 256 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEEC
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEEC
Confidence 12346778999999754322 22 1121 12677899999987643 222233332 2343 5889999
Q ss_pred CCCCCCChhHHHHHHHHHhccc
Q 004311 202 LDRMGADPWKVLDQARSKLRHH 223 (762)
Q Consensus 202 ~D~~~~~~~~~~~~i~~~l~~~ 223 (762)
.|.. +.. ..+-.+...++.+
T Consensus 257 ~d~~-a~g-g~~l~i~~~~~~p 276 (304)
T 1rj9_A 257 LDGT-AKG-GVLIPIVRTLKVP 276 (304)
T ss_dssp TTSS-CCC-TTHHHHHHHHCCC
T ss_pred Cccc-ccc-cHHHHHHHHHCCC
Confidence 9974 222 2333455555543
No 244
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.17 E-value=0.0019 Score=68.00 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=55.8
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCEE-EEEeCCCCCCCChhHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRL-AFINKLDRMGADPWKV 212 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~i-iviNK~D~~~~~~~~~ 212 (762)
+++.+.|||||+..... .+..++..+|.+|+|+++...-.......++.+.. .+++++ +|+|+.+. ...
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-----~~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----TDE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----CHH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-----HHH
Confidence 35899999999875422 23456789999999998765434445555555554 345555 89999984 245
Q ss_pred HHHHHHHhcccee
Q 004311 213 LDQARSKLRHHCA 225 (762)
Q Consensus 213 ~~~i~~~l~~~~~ 225 (762)
++++.+.++....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6777777775544
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.14 E-value=0.00059 Score=71.64 Aligned_cols=146 Identities=19% Similarity=0.220 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCceeeeeecCCCccccccCChh-hhhhhcceeecce-------------E
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------T 133 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~ 133 (762)
+-+.|+++|+.|+||||++..|.... +.-......+... ........ .-...|+.+-... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45679999999999999999886432 1111110001110 00000000 0011233222100 0
Q ss_pred EEeecCeeEEEEeCCCCcCcHHH----HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCC
Q 004311 134 SCAWKDYQINIIDTPGHVDFTVE----VERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMG 206 (762)
Q Consensus 134 ~~~~~~~~i~liDTPG~~df~~~----~~~al--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p-~iiviNK~D~~~ 206 (762)
.....++.+.||||||....... +.... -.+|.+++|+|+..+ .......+.... .++ .-+++||+|...
T Consensus 175 ~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS
T ss_pred HHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc
Confidence 00114689999999987543222 22221 248999999998754 222222222221 244 358899999753
Q ss_pred CChhHHHHHHHHHhccc
Q 004311 207 ADPWKVLDQARSKLRHH 223 (762)
Q Consensus 207 ~~~~~~~~~i~~~l~~~ 223 (762)
... ..-++...++.+
T Consensus 252 -~~g-~~~~~~~~~~~p 266 (295)
T 1ls1_A 252 -RGG-AALSARHVTGKP 266 (295)
T ss_dssp -SCH-HHHHHHHHHCCC
T ss_pred -cHH-HHHHHHHHHCcC
Confidence 222 233444455543
No 246
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.08 E-value=0.0021 Score=56.37 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCeEEEEEEEeecCCccEEEEEEEeeeecCCCeEEecCCC-eEEEcCeEEEeecCcccccccccCCCEEEE--ccc--c
Q 004311 370 DGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTG-KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--D 444 (762)
Q Consensus 370 ~~p~~~~V~k~~~d~~G~l~~~RV~sG~l~~g~~v~~~~~~-~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~ 444 (762)
.-|....|.+++.-=+|.+..|||.+|+|++|+.| +.+ ...+|.+|.. +.+++++|.+||.|++ .|. +
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~~ 104 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIGK 104 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCCC
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCccc
Confidence 34555555553322247899999999999999999 444 4566777763 5568999999999995 454 4
Q ss_pred cccCceee
Q 004311 445 CASGDTFT 452 (762)
Q Consensus 445 ~~~GdtL~ 452 (762)
++.||+|.
T Consensus 105 I~~GdVLy 112 (116)
T 1xe1_A 105 VKKGDVLE 112 (116)
T ss_dssp CCTTCEEE
T ss_pred cCCCcEEE
Confidence 66777764
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.03 E-value=0.00082 Score=70.54 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh----cCCceeeeeecCCCccccccCChhh-hhhhcceeecce-------EEEeec
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY----TGRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAA-------TSCAWK 138 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~----~g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~-------~~~~~~ 138 (762)
+-+.|+++|+.|+||||++..|... .|.. ..-+..........+.... -...|+.+.... ..-...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~--V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKK--IAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCC--EEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCE--EEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 4568999999999999999998642 2311 1111111000000000000 001122111000 000135
Q ss_pred CeeEEEEeCCCCcCcHHHH----HHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHHc-CCC-EEEEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEV----ERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY-EVP-RLAFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~----~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~~p-~iiviNK~D~~ 205 (762)
++.+.|+||||........ ...+. ..|.+++|+|+..+.. .+.+.+... .++ .-+++||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 6899999999986543322 22222 2578899999987532 122222222 122 24677999975
No 248
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.91 E-value=0.0027 Score=70.20 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.++--|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45778999999999999999999865
No 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.66 E-value=0.00085 Score=70.60 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHhcCEEEEEEeCCCCcchhH--HHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 160 ALRVLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 160 al~~aD~aIlVvDa~~gv~~qt--~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
++..+|.+++|+|+..+..... .+.+..+...++|+++|+||+|+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 5788999999999997765554 2223334567999999999999864
No 250
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.65 E-value=0.0064 Score=62.37 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=48.5
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDR 204 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~~p~iiviNK~D~ 204 (762)
..+.+.|||||+... .....++..+|.+|+|+.+...-......+.+.+... ++++.+|+|+++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 358899999998764 4567788899999999998654444445555666655 4577899999954
No 251
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.61 E-value=0.0034 Score=63.95 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=56.2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcC---------CCEEEEEeCCCCCCC--
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE---------VPRLAFINKLDRMGA-- 207 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~---------~p~iiviNK~D~~~~-- 207 (762)
.+.+.+||||+... ..+..++..+|.+|+|+++...-.......++.+...+ .+.-+|+|++|....
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999998654 46788899999999999987554444555555554433 456799999985210
Q ss_pred ChhHHHHHHHHHhccce
Q 004311 208 DPWKVLDQARSKLRHHC 224 (762)
Q Consensus 208 ~~~~~~~~i~~~l~~~~ 224 (762)
.....++++.+.++...
T Consensus 191 ~~~~~~~~~~~~~~~~~ 207 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIKL 207 (260)
T ss_dssp TSSCCHHHHHHHHCSEE
T ss_pred ccccCHHHHHHHhCCce
Confidence 00011356666666543
No 252
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.61 E-value=0.044 Score=54.98 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=58.2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCC---CEEEEEeCCCCCCCChhHHHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV---PRLAFINKLDRMGADPWKVLDQ 215 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~---p~iiviNK~D~~~~~~~~~~~~ 215 (762)
.+.+.|||||+.... ....++..+|.+|+|+.....-...+...++.+...+. ..-+|+|++|..... ..++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~---~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI---TSDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS---CHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC---CHHH
Confidence 488999999987643 55678899999999999876555556667777776663 367999999965322 2356
Q ss_pred HHHHhccce
Q 004311 216 ARSKLRHHC 224 (762)
Q Consensus 216 i~~~l~~~~ 224 (762)
+.+.++...
T Consensus 193 ~~~~~~~~v 201 (245)
T 3ea0_A 193 IEKVIGRPI 201 (245)
T ss_dssp HHHHHTSCE
T ss_pred HHHHhCCCe
Confidence 666776543
No 253
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.56 E-value=0.0012 Score=68.93 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=49.3
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchh---HHH--------------HH--HHHHH----cC-CC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQ---SIT--------------VD--RQMRR----YE-VP 194 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~q---t~~--------------~~--~~~~~----~~-~p 194 (762)
.+.+.|||||+.. ...+..++..+|.+|+|+.+...-... +.. +| +.+.. .+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 466788999999999999875321111 011 22 32222 24 66
Q ss_pred EEEEEeCCCCCC-CChhHHHHHHHH
Q 004311 195 RLAFINKLDRMG-ADPWKVLDQARS 218 (762)
Q Consensus 195 ~iiviNK~D~~~-~~~~~~~~~i~~ 218 (762)
+.+|+|++|... ....+..+.+.+
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~ 205 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNA 205 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHH
T ss_pred EEEEEeeecCCCcchhHHHHHHHHH
Confidence 789999999754 223333444444
No 254
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.53 E-value=0.016 Score=55.77 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=90.9
Q ss_pred CCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccc
Q 004311 620 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGND 699 (762)
Q Consensus 620 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~ 699 (762)
+..++||.|.++.. |-..---.+.+..|-..|.+ +|+.+|+..-..|...+.|.++-..+|.|...|.+.. .|.+.+
T Consensus 80 ~~~l~nv~vVVtRy-fGGi~LG~ggLvraY~~~a~-~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~ 156 (191)
T 2cve_A 80 AQGLDRVAVLVVRY-FGGVKLGAGGLVRAYGGVAA-EALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEET 156 (191)
T ss_dssp HTTBCSEEEEEEEE-CCSSCCHHHHHHHHHHHHHH-HHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEE
T ss_pred HcCCCcEEEEEEEE-eCCcccCcchHHHHHHHHHH-HHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccE
Confidence 45678888888752 11122234456667778888 9999999999999999999999999999999999988 998887
Q ss_pred cCCCeEEEEEEechhhhhchHHHHhhhcCCeEEE
Q 004311 700 QEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEF 733 (762)
Q Consensus 700 ~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~ 733 (762)
..+....++..+|..+.-.|...|..+|+|++.+
T Consensus 157 y~~~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 157 YTPEGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EETTEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EcCCeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7643378899999999999999999999999754
No 255
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.44 E-value=0.012 Score=61.68 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=52.5
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~ 205 (762)
.+.+.|||||+..... ........+|.+|+|+.+...-..+....++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3789999999976543 23334578999999999988777788888888888888865 889999964
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.35 E-value=0.012 Score=61.80 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCcccc-ccCChhhh-hhhcceeecceEE-E--------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGA-KMDSMDLE-REKGITIQSAATS-C-------- 135 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~~-~~d~~~~e-~~~giTi~~~~~~-~-------- 135 (762)
.-..++++|+.|+|||||+..|.... |.+. +.+.+.... ..+....- ...++.+-..... .
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~----l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL----MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 174 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE----EECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE----EEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence 34579999999999999999986432 2221 111110000 00000000 1123333222111 0
Q ss_pred -----eecCeeEEEEeCCCCcCcHHHH-------HHHH-----HhcCEEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEE
Q 004311 136 -----AWKDYQINIIDTPGHVDFTVEV-------ERAL-----RVLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLA 197 (762)
Q Consensus 136 -----~~~~~~i~liDTPG~~df~~~~-------~~al-----~~aD~aIlVvDa~~gv~~qt~~~~~~~~-~~~~p~ii 197 (762)
...+....++||.|...+.... ..++ ...+-+++|+|++.|...... .+... ..++ .++
T Consensus 175 ~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~i 251 (302)
T 3b9q_A 175 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGL 251 (302)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEE
T ss_pred HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEE
Confidence 0123557899999986543221 1122 125667999998887655433 22333 3344 477
Q ss_pred EEeCCCCC
Q 004311 198 FINKLDRM 205 (762)
Q Consensus 198 viNK~D~~ 205 (762)
+++|+|-.
T Consensus 252 iiThlD~~ 259 (302)
T 3b9q_A 252 ILTKLDGS 259 (302)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCC
Confidence 89999864
No 257
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.32 E-value=0.0012 Score=69.49 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
..++|+|++|+|||||+|+|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 479999999999999999995
No 258
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.28 E-value=0.012 Score=60.13 Aligned_cols=87 Identities=9% Similarity=-0.144 Sum_probs=61.1
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCC----C--C--
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMG----A--D-- 208 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~----~--~-- 208 (762)
..+.+.|||||+..........++..+|.+|+|+.....-.......++.+.+.+++++ +|+|+.|... . .
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 57899999999976543333334457999999999887666666777777877889987 9999998411 0 1
Q ss_pred hhHHHHHHHHHhccce
Q 004311 209 PWKVLDQARSKLRHHC 224 (762)
Q Consensus 209 ~~~~~~~i~~~l~~~~ 224 (762)
....++++.+.++...
T Consensus 207 ~~~~~~~~~~~~g~~~ 222 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGF 222 (262)
T ss_dssp CCCCHHHHHHHTTCSE
T ss_pred cccHHHHHHHHcCCCe
Confidence 1234667777777543
No 259
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.23 E-value=0.0038 Score=65.64 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
..++++|++|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 260
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.17 E-value=0.021 Score=59.44 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=52.8
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (762)
.+.+.|||||+..... ......+.+|++|+|+.+...-.......++.+...+.++ -+|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 3789999999976543 3344567799999999998777777778888888888886 58999999743
No 261
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.12 E-value=0.014 Score=57.39 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=92.2
Q ss_pred CCCeeEEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHHhCCCeEeeeeEEEEEEecccchHHHHHHHhcCCceeeccc
Q 004311 620 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGND 699 (762)
Q Consensus 620 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~ 699 (762)
+..++||.|.++.. |-..---.+.+..|-..|.+ +|+.+|+.+-..|...+.|.++-..+|.|...|.+..+.|.+.+
T Consensus 92 ~~~l~nv~vVVtRy-fGGikLG~ggLvraY~~aa~-~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~ 169 (217)
T 1vi7_A 92 GSGVGEITAVVVRY-YGGILLGTGGLVKAYGGGVN-QALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSD 169 (217)
T ss_dssp HHTCCSEEEECCEE-CCSCCCCHHHHHHHHHHHHH-HHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCCEEEEEEEE-eCCceecccHHHHHHHHHHH-HHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceE
Confidence 34577888877642 11122334556677788888 99999999999999999999999999999999999999999988
Q ss_pred cCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004311 700 QEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 734 (762)
Q Consensus 700 ~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 734 (762)
.. +...++..+|..+.-.|...|..+|+|++.+.
T Consensus 170 y~-~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 170 YQ-AFVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp ES-SSEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred ec-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 75 45788999999999999999999999998543
No 262
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.04 E-value=0.035 Score=57.53 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=51.2
Q ss_pred CeeEEEEeCCCCcCcHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChhHH
Q 004311 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKV 212 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~-~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~ 212 (762)
++.+.||||||....... .......+|.+|+|+.+...-.......++.+.. .++++ -+|+|+.+. ......
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~--~~~~~~ 195 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT--DREDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC--TTHHHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc--hhHHHH
Confidence 689999999996432111 1122357999999998764333333333444333 25664 578899873 223456
Q ss_pred HHHHHHHhccce
Q 004311 213 LDQARSKLRHHC 224 (762)
Q Consensus 213 ~~~i~~~l~~~~ 224 (762)
++++.+.++...
T Consensus 196 ~~~l~~~~g~~~ 207 (289)
T 2afh_E 196 IIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHTSCE
T ss_pred HHHHHHHcCccc
Confidence 777777777554
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.01 E-value=0.02 Score=61.47 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=65.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc----CCceeeeeecCCCcccc-ccCChhh-hhhhcceeecceEE----------
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGA-KMDSMDL-EREKGITIQSAATS---------- 134 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~----g~i~~~~~v~~~~~~~~-~~d~~~~-e~~~giTi~~~~~~---------- 134 (762)
+-..|+++|+.|+|||||+..|.... |.+. +.+.+.+.. ..+.... -...++.+-.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~----l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL----MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 231 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE----EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE----EecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence 34579999999999999999986432 2221 111110000 0000000 01123332211110
Q ss_pred -E---eecCeeEEEEeCCCCcCcHHHH-------HHHH-----HhcCEEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEE
Q 004311 135 -C---AWKDYQINIIDTPGHVDFTVEV-------ERAL-----RVLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLA 197 (762)
Q Consensus 135 -~---~~~~~~i~liDTPG~~df~~~~-------~~al-----~~aD~aIlVvDa~~gv~~qt~~~~~~~~-~~~~p~ii 197 (762)
+ ...++...++||.|...+.... ..++ ...+-++||+|++.|...... ..... ..++ .++
T Consensus 232 ~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~i 308 (359)
T 2og2_A 232 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGL 308 (359)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEE
T ss_pred HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEE
Confidence 0 0124567899999986543221 1121 125677999998877655433 22222 2343 478
Q ss_pred EEeCCCCC
Q 004311 198 FINKLDRM 205 (762)
Q Consensus 198 viNK~D~~ 205 (762)
+++|+|-.
T Consensus 309 iiThlD~~ 316 (359)
T 2og2_A 309 ILTKLDGS 316 (359)
T ss_dssp EEESCTTC
T ss_pred EEecCccc
Confidence 89999864
No 264
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.00 E-value=0.022 Score=57.99 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=57.1
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH------cCCCEE-EEEeCCCCCCCChh
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YEVPRL-AFINKLDRMGADPW 210 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~ 210 (762)
..+.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+.. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 5689999999997653 35677889999999999875433333333333322 256664 89999986543334
Q ss_pred HHHHHHHHHhccce
Q 004311 211 KVLDQARSKLRHHC 224 (762)
Q Consensus 211 ~~~~~i~~~l~~~~ 224 (762)
...+.+.+.++...
T Consensus 188 ~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 188 QVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHGGGB
T ss_pred HHHHHHHHHccccc
Confidence 55677777776543
No 265
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=95.79 E-value=0.021 Score=48.71 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=58.4
Q ss_pred EEEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCeEE---EcCeEEEeecCcccccccccCCCEEEEc--cc-ccccC
Q 004311 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKI---KVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV-DCASG 448 (762)
Q Consensus 376 ~V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~---ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~G 448 (762)
-|-.+|..+. |.+|-++|.+|.++.+..+.+.+.|... ++.+|. +....|+++.+|.=|+|. +. |.+.|
T Consensus 10 eVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~l~~~~dik~G 85 (99)
T 1d1n_A 10 EVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKEG 85 (99)
T ss_dssp EECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSSC
T ss_pred EEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhc----ccccccceECCCcEEEEEEcCcCCCCCC
Confidence 4444555555 9999999999999999999999988543 677766 556789999999999973 45 88999
Q ss_pred ceee
Q 004311 449 DTFT 452 (762)
Q Consensus 449 dtL~ 452 (762)
|.|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9874
No 266
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.77 E-value=0.036 Score=56.60 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=51.9
Q ss_pred CeeEEEEeCCCCcCcHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChhHH
Q 004311 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKV 212 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~-~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~ 212 (762)
.+.+.||||||....... .......+|.+|+|+.+...-.......++.+.. .+++. -+|+|+.+.. .....
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA--NEYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS--CCHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc--hhHHH
Confidence 589999999996432111 1112257999999999865433334444444443 25565 5889998742 22456
Q ss_pred HHHHHHHhccce
Q 004311 213 LDQARSKLRHHC 224 (762)
Q Consensus 213 ~~~i~~~l~~~~ 224 (762)
.+++.+.++...
T Consensus 193 ~~~l~~~~~~~v 204 (269)
T 1cp2_A 193 LDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHcCCcc
Confidence 777777777553
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.44 E-value=0.029 Score=60.11 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHhcCEEEEEEeCCCCcchhHHHH---HHHHHHcCCCEEEEEeCCCCC
Q 004311 160 ALRVLDGAILVLCSVGGVQSQSITV---DRQMRRYEVPRLAFINKLDRM 205 (762)
Q Consensus 160 al~~aD~aIlVvDa~~gv~~qt~~~---~~~~~~~~~p~iiviNK~D~~ 205 (762)
.+..+|.+++| ||..+.. ....+ +..+...++|+++|+||+|+.
T Consensus 127 i~anvD~v~iv-~a~~P~~-~~~~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPEL-SLNIIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp EEECCCEEEEE-EESTTTC-CHHHHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred HHhcCCEEEEE-EeCCCCC-CHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 35778999876 5554432 22233 333456799999999999985
No 268
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.38 E-value=0.034 Score=56.59 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=59.4
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQAR 217 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~ 217 (762)
++.+.|||||+... .....++..+|.+|+|+.+...-...+...++.+...+.+. -+|+|++|.... ...++++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~--~~~~~~~~ 185 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEIE 185 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc--cchHHHHH
Confidence 58999999998765 56778899999999999887654555666667776667665 589999986422 14566676
Q ss_pred HHhccc
Q 004311 218 SKLRHH 223 (762)
Q Consensus 218 ~~l~~~ 223 (762)
+.++..
T Consensus 186 ~~~~~~ 191 (263)
T 1hyq_A 186 AILEAK 191 (263)
T ss_dssp HHTTSC
T ss_pred HHhCCC
Confidence 666654
No 269
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.12 E-value=0.05 Score=54.30 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=59.3
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChhHHHHHHH
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQAR 217 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~ 217 (762)
.+.+.+||||+... .....++..+|.+|+|+++...-...+...++.+.+.+.+. -+|+||.|..... ..++++.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 186 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAE 186 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHHH
Confidence 47899999998755 56778899999999999987655555666677777777665 5899999865332 3455666
Q ss_pred HHhccc
Q 004311 218 SKLRHH 223 (762)
Q Consensus 218 ~~l~~~ 223 (762)
+.++..
T Consensus 187 ~~~~~~ 192 (237)
T 1g3q_A 187 DVMEVP 192 (237)
T ss_dssp HHHCSC
T ss_pred HHhCcc
Confidence 666654
No 270
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.00 E-value=0.011 Score=62.06 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..++++|++|+|||||++.|+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4689999999999999999953
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.81 E-value=0.014 Score=62.56 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..++++|++|+|||||+|.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999964
No 272
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.30 E-value=0.012 Score=65.72 Aligned_cols=107 Identities=9% Similarity=0.023 Sum_probs=56.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (762)
-.+|.++|.+|+||||+..+|....+..... .. ....|....+ ..|. .....++|+.|..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~--t~-----~~~~d~~r~~-~~g~------------~~~~~ifd~~g~~ 98 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP--TR-----EFNVGQYRRD-MVKT------------YKSFEFFLPDNEE 98 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC--EE-----EEEHHHHHHH-HHCS------------CCCGGGGCTTCHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCC--ce-----EEecchhhhh-hccC------------CCcccccCCCCHH
Confidence 3579999999999999999996543211000 00 0000000000 0110 1123467888873
Q ss_pred C--cHHHH--------HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEE
Q 004311 152 D--FTVEV--------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAF 198 (762)
Q Consensus 152 d--f~~~~--------~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiv 198 (762)
. +...+ ..++...++.++|+|++..-..+-...+..+.+.+.+++++
T Consensus 99 ~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 99 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 2 23222 44455578889999998764333333345555666665443
No 273
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.16 E-value=0.13 Score=45.31 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=52.0
Q ss_pred cc---EEEEEEEeeeecCCCeEEecCCCeEE---EcCeEEEeecCcccccccccCCCEEEEc--cc--ccccCceee
Q 004311 386 GQ---LTYLRIYEGVIRKGDFIINVNTGKKI---KVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV--DCASGDTFT 452 (762)
Q Consensus 386 G~---l~~~RV~sG~l~~g~~v~~~~~~~~~---ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~GdtL~ 452 (762)
|. +|-++|.+|.++.+..+++.+.+... ++..|. +....|+++.+|.=|+|. +. |.+.||+|-
T Consensus 25 g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~l~~fniDik~GDiIE 97 (120)
T 2crv_A 25 KKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK----HHKDDISVIKTGMDCGLSLDEEKVEFKPGDQVI 97 (120)
T ss_dssp TEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE----SSSSCCSEECTTCEEEEECSCTTSCCCTTEEEE
T ss_pred CceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc----ccccccceecCCCEEEEEEccCCCCCCCCCEEE
Confidence 66 99999999999999999999988543 566665 556789999999999973 33 678999884
No 274
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.14 E-value=0.32 Score=51.89 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred cCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCC-C---------hhHHHHHHHHHhccc
Q 004311 164 LDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA-D---------PWKVLDQARSKLRHH 223 (762)
Q Consensus 164 aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~-~---------~~~~~~~i~~~l~~~ 223 (762)
.+++++|.-+..-....+++.+..+.+.++|+ -+|+|++..... . ....++++.+.++..
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 307 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDK 307 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 47889999887777778889999999999998 589999986532 1 234556666666543
No 275
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.87 E-value=0.09 Score=54.06 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=51.5
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRM 205 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~ 205 (762)
.+.+.|||||+..... ........+|.+|+|+.+...-........+.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 3789999999975532 23344578999999999987777777777788888888876 899999964
No 276
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.65 E-value=0.36 Score=47.43 Aligned_cols=93 Identities=9% Similarity=0.054 Sum_probs=58.6
Q ss_pred cCeeEEEEeCCCCcC--cHH--HHHHHHHh-cCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChhH
Q 004311 138 KDYQINIIDTPGHVD--FTV--EVERALRV-LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWK 211 (762)
Q Consensus 138 ~~~~i~liDTPG~~d--f~~--~~~~al~~-aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 211 (762)
+++.+.||||||... ... .....+.. .+.+|+|+++..+-..++...++.+...+++++ +|+|++|........
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 358999999997642 110 11111222 235888888865544556666666777788865 889999975444456
Q ss_pred HHHHHHHHhccceeeeeecC
Q 004311 212 VLDQARSKLRHHCAAVQVPM 231 (762)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi 231 (762)
..+.+.+.++..... .+|.
T Consensus 187 ~~~~l~~~~~~~vl~-~Ip~ 205 (224)
T 1byi_A 187 YMTTLTRMIPAPLLG-EIPW 205 (224)
T ss_dssp HHHHHHHHSSSCEEE-EECC
T ss_pred HHHHHHHHcCCCEEE-ECCC
Confidence 777787777755432 3554
No 277
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.49 E-value=0.23 Score=54.50 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=59.8
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcCCce---eeee---ecCCCccccccCChhhhhhhcceeecceEEEee---cC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIH---EIHE---VRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KD 139 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i~---~~~~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~ 139 (762)
...+.-|+|+|..++|||+|+|.|+...+... -.+. ...+.. +.. ...-..+||-+......+.. .+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~---~~~-~~~~~TkGIWmw~~p~~~~~~~g~~ 139 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS---WRG-GSERETTGIQIWSEIFLINKPDGKK 139 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSC---CCC-SSSCCCCSEEEESSCEEEECTTSCE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCce---eCC-CCCCcCceEEEecCcccccCCCCCe
Confidence 34678899999999999999997764321000 0000 001100 000 00112256666555444433 23
Q ss_pred eeEEEEeCCCCcCcH-----HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHH
Q 004311 140 YQINIIDTPGHVDFT-----VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQM 188 (762)
Q Consensus 140 ~~i~liDTPG~~df~-----~~~~~al~--~aD~aIlVvDa~~gv~~qt~~~~~~~ 188 (762)
..+.|+||.|..+-. ...+-++. .++..|+=+ ...+..+....+...
T Consensus 140 ~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~--~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 140 VAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNL--SQNVQEDDLQHLQLF 193 (457)
T ss_dssp EEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEE--ESSCCHHHHHHHHHH
T ss_pred eEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecc--cccCCHHHHHHHHHH
Confidence 679999999975431 22333343 456555543 345556665555443
No 278
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.48 E-value=0.041 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+++|+|++|+|||||++.|+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976543
No 279
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=93.27 E-value=0.059 Score=43.86 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=54.2
Q ss_pred EEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEE
Q 004311 670 MLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEF 733 (762)
Q Consensus 670 ~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~ 733 (762)
....+.++-..+|+|...|.+..+.|.+.+.. +...++..+|..+.-.|...|..+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~-~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQ-AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE-EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEccccc-CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 35678899999999999999999999998874 4588999999999999999999999999754
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.16 E-value=0.042 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+.++|+|++|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56999999999999999999754
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.07 E-value=0.051 Score=52.02 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-++|+|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
No 282
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.91 E-value=0.42 Score=50.33 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=43.0
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCC-C---------hhHHHHHHHHHhccc
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA-D---------PWKVLDQARSKLRHH 223 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~-~---------~~~~~~~i~~~l~~~ 223 (762)
+++++|+-+..-....+++.+..+.+.++|+ -+|+|++..... . ....++++.+.++..
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 292 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDK 292 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4889998887777778888999999999998 589999986532 1 124455666666533
No 283
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.67 E-value=0.64 Score=44.23 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-..|+++|.+|+||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998643
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.39 E-value=0.058 Score=51.91 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-++|+|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 34899999999999999999754
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.18 E-value=0.072 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
-.-++|+|+.|||||||++.|....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999997543
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.15 E-value=0.074 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
..|+|+|++|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 469999999999999999997653
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.05 E-value=0.097 Score=51.08 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+-+-|+|+|++|+|||||+++|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999986543
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.99 E-value=0.092 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+-..|+++|++|||||||++.|..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999954
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.83 E-value=0.09 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.+|+|+|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999966544
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.82 E-value=0.097 Score=49.07 Aligned_cols=25 Identities=12% Similarity=-0.114 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975544
No 291
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.81 E-value=1.4 Score=46.64 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=41.9
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC---CC---------hhHHHHHHHHHhcc
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG---AD---------PWKVLDQARSKLRH 222 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~~---~~---------~~~~~~~i~~~l~~ 222 (762)
+.+++|.-+..-....+++.+..+.+.++|+ -+|+|++.-+. .+ ..+.++++.+.+..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~ 293 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDE 293 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccC
Confidence 4788888877666777888999999999998 58999987431 11 12456666666654
No 292
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.70 E-value=0.55 Score=51.33 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
..+-|.++|.+|+||||+...|....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999996543
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.69 E-value=0.088 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
-..++|+|+.|||||||++.|+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999997543
No 294
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.69 E-value=0.071 Score=52.49 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEeecCeeEEEEeCCCCcCc
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 153 (762)
+|.|+|+|||||+|....|...-|... ++.| |-...+...+.........+--.|.. .|- .-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~----istG-------dllR~~i~~~t~lg~~~~~~~~~G~l-----vpd-~iv 64 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH----ISTG-------DILREAVQKGTPLGKKAKEYMERGEL-----VPD-DLI 64 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE----EEHH-------HHHHHHHHHTCHHHHHHHHHHHHTCC-----CCH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE----EcHH-------HHHHHHHHhcChhhhhHHHHHhcCCc-----CCH-HHH
Confidence 588999999999999999987766542 1111 22222222221111000000000100 010 001
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCE
Q 004311 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR 195 (762)
Q Consensus 154 ~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~ 195 (762)
...+...+...++ +++|+-..-..|...+...+...++++
T Consensus 65 ~~lv~~~l~~~~~--~ilDGfPRt~~Qa~~l~~~l~~~~~~~ 104 (206)
T 3sr0_A 65 IALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKV 104 (206)
T ss_dssp HHHHHHHCCSSSC--EEEESCCCSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhhccCCc--eEecCCchhHHHHHHHHhhHHHhcccc
Confidence 2233445556666 677987766677776666677777765
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.67 E-value=0.13 Score=48.63 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
-..|+++|.+|+|||||++.|....|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 467999999999999999999765454
No 296
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.64 E-value=0.1 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+-..|+|+|++|+|||||++.|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.55 E-value=0.12 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
++-++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999753
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.51 E-value=0.11 Score=50.41 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=24.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGRI 99 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~i 99 (762)
.-..|+|+|.+|+|||||++.|....|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 34679999999999999999997665543
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.50 E-value=0.09 Score=49.88 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
--++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999863
No 300
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.30 E-value=0.1 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
+-.-++|+|+.|||||||++.|+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44679999999999999999997654
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.26 E-value=0.11 Score=48.76 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
.-..++++|+.|||||||++.|....
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33569999999999999999997543
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.16 E-value=0.13 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+++.|+|+|..|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.09 E-value=0.11 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 448999999999999999998653
No 304
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=91.07 E-value=0.31 Score=53.06 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=54.9
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcc-------hhHHHHHHHHHHcCCC-----EEEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVP-----RLAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~~p-----~iiviNK~D~~ 205 (762)
+++.+.|||||+... ..+..++..+|.+|+|+.+..-.. ......++.+.+.+.+ ++.++|+.|..
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~ 323 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK 323 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc
Confidence 358899999998765 557778899999999998753211 1222344445555433 35689999832
Q ss_pred CCChhHHHHHHHHHhccceeeeeec
Q 004311 206 GADPWKVLDQARSKLRHHCAAVQVP 230 (762)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~p 230 (762)
.......+.+.+.++.......+|
T Consensus 324 -~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 324 -RDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp -HHHHHHHHHHHHHHTTSEECCC--
T ss_pred -hhHHHHHHHHHHHhhHhhhceeCC
Confidence 123355677777888765444454
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.04 E-value=0.13 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
-+-|+|+|++|+|||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4569999999999999999997654
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.00 E-value=0.14 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
..|+|+|.+|+||||+.+.| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 36899999999999999999 55443
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.90 E-value=0.15 Score=49.79 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-..|+|+|+.|+|||||++.|...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999653
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.68 E-value=0.16 Score=49.24 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
+.++|+|+|.+|+||||+...|....+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999765543
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.64 E-value=0.14 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..++++|++|||||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999965
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.64 E-value=0.14 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..|+|+|++|||||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998653
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.59 E-value=0.16 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.-..++|+|+.|+|||||++.|+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999994
No 312
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.59 E-value=0.12 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.--.++|+|+.|||||||++.|
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3456999999999999999999
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.57 E-value=0.13 Score=51.34 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~L 92 (762)
..++|+|+.|||||||++.|
T Consensus 31 e~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.50 E-value=0.083 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..|+|+|.+|+|||||++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999964
No 315
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.45 E-value=1.4 Score=42.75 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-++|+|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 316
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.42 E-value=5.2 Score=40.23 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=45.4
Q ss_pred CeeEEEEeCCCCc-----Cc-HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCC
Q 004311 139 DYQINIIDTPGHV-----DF-TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLD 203 (762)
Q Consensus 139 ~~~i~liDTPG~~-----df-~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D 203 (762)
++.+.+||+||-. +. .....-+-....-+|+|+|+..|-..++...++.+...++++. +++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 5789999999742 11 1122223334567899999988776777777777778888874 7889985
No 317
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.40 E-value=0.67 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
...|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999654
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.32 E-value=0.17 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.++|+++|.+|+||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976544
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.25 E-value=0.15 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
+-+.|+|+|.+|+|||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999997654
No 320
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.24 E-value=0.17 Score=50.89 Aligned_cols=28 Identities=32% Similarity=0.204 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGRI 99 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~i 99 (762)
...|+|+|++|||||||++.|...-|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3579999999999999999997555543
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.17 E-value=0.16 Score=49.32 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
.+.|+|+|.+|+|||||++.|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999765443
No 322
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.99 E-value=0.15 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004311 70 ERLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
+. -.++|+|+.|||||||++.|.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHh
Confidence 45 679999999999999999994
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.92 E-value=0.17 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.+|+|+|.+|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999965
No 324
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.83 E-value=0.17 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999965
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.83 E-value=0.17 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.69 E-value=0.21 Score=47.44 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.++|+|+|.+|+||||+...|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999965544
No 327
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.67 E-value=0.46 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.-+.|.|.+++|||||+-.++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 45889999999999999988654
No 328
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.65 E-value=2.2 Score=44.91 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=33.4
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCC
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDR 204 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~ 204 (762)
+.+++|..+.......+.+.+..+...++|+. +|+|+..-
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47888988877667788889999999999984 78999983
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.62 E-value=0.18 Score=52.71 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..-..++|+|++|+|||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34467999999999999999999744
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.60 E-value=0.19 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-..++|+|+.|+|||||++.|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999974
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.57 E-value=0.15 Score=50.27 Aligned_cols=23 Identities=22% Similarity=-0.045 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-.++|+|+.|+|||||++.|...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999653
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.48 E-value=0.17 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
-++++++|++|+|||||+.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 333
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.48 E-value=0.19 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004311 74 NIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.++|+|+.|+|||||++.|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999988653
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.48 E-value=0.2 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
..|+|+|.+|+||||+++.|...-|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975544
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.44 E-value=0.2 Score=47.71 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+.|+|.|.+|+||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 336
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.44 E-value=0.17 Score=50.96 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.-..++|+|+.|+|||||++.|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3356999999999999999999
No 337
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.44 E-value=0.16 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.-..++|+|+.|||||||++.|.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 33569999999999999999993
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.42 E-value=0.16 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.-..++|+|+.|||||||++.|
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999999
No 339
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.42 E-value=0.16 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.150 Sum_probs=19.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~L 92 (762)
--.++|+|+.|||||||++.|
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 346999999999999999999
No 340
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.38 E-value=0.17 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
+-..++|+|+.|+|||||++.|+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 33569999999999999999993
No 341
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.33 E-value=0.23 Score=46.89 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999976543
No 342
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.32 E-value=0.18 Score=51.14 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
--.++|+|+.|+|||||++.|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999994
No 343
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.32 E-value=0.17 Score=52.17 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
-.++|+|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999993
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.29 E-value=0.28 Score=47.46 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
.+.+.|+|.|.+|+||||+...|....|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34578999999999999999999765553
No 345
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.26 E-value=0.17 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.-..++|+|+.|+|||||++.|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999994
No 346
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.24 E-value=0.18 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
..++|+|+.|+|||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999999993
No 347
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.24 E-value=0.23 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+|+|+|.+|+||||++..|...-+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999976544
No 348
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.17 E-value=0.58 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999764
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.17 E-value=0.29 Score=47.13 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999998765
No 350
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.15 E-value=0.18 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=19.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~L 92 (762)
--.++|+|+.|+|||||++.|
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 346999999999999999999
No 351
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.14 E-value=0.18 Score=51.06 Aligned_cols=21 Identities=48% Similarity=0.514 Sum_probs=19.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~L 92 (762)
--.++|+|+.|||||||++.|
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 346999999999999999999
No 352
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.97 E-value=0.24 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.+-..|+|+|.+|+|||||...|...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988643
No 353
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.96 E-value=0.3 Score=46.61 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
-..|.++|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999975444
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.91 E-value=0.21 Score=50.25 Aligned_cols=27 Identities=41% Similarity=0.520 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+-..|+|+|+.|||||||++.|...-|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 335699999999999999999966444
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.91 E-value=0.26 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
+|+|+|.+|+||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765553
No 356
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.88 E-value=0.19 Score=51.41 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
+-..++|+|+.|||||||++.|
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHHHH
Confidence 3456899999999999999999
No 357
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.87 E-value=0.14 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=16.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
-.-|+|+|++|||||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999996
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.87 E-value=0.29 Score=46.79 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-.+|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999654
No 359
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.87 E-value=0.27 Score=48.19 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
+|+|+|.+|+||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999765553
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.87 E-value=0.26 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.+|+++|.+|+||||+...|....+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.84 E-value=0.27 Score=47.90 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
....|+|+|.+|+|||||++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999643
No 362
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.83 E-value=1.8 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..++.+.|++|+|||||+.+|...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 358999999999999999998654
No 363
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.73 E-value=0.22 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
++.-++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5778999999999999999999854
No 364
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.73 E-value=0.21 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
-..++|+|++|||||||+..|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999999886
No 365
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.73 E-value=0.21 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.--.++|+|+.|||||||++.|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 33468999999999999999994
No 366
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.69 E-value=0.24 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
++|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999976544
No 367
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.65 E-value=0.2 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~L 92 (762)
-..++|+|+.|+|||||++.|
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 346899999999999999999
No 368
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.61 E-value=0.24 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-++|+|++|+|||||+..|+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 369
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.60 E-value=0.28 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..-.-|+|+|++|||||||++.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456799999999999999999854
No 370
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.57 E-value=0.88 Score=45.54 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=55.4
Q ss_pred eeEEEEEEecccchHHHHHHHhcCCceeeccccC-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004311 668 PVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 734 (762)
Q Consensus 668 Pi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 734 (762)
--|++.|.+|.++.+.+++.|.+. |.|.+++.. ++.+.+.+.+|-.---.|.+.|++.|+|.|.+.
T Consensus 183 a~m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 183 EKVRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 457889999999999999999654 788777654 467788899998877788999999999999764
No 371
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.55 E-value=0.2 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=19.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.--.++|+|+.|||||||++.|.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 33468999999999999999993
No 372
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=88.44 E-value=1.2 Score=49.89 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=57.3
Q ss_pred EEEEeecCC-ccEEEEEEEeeeecCCCeEEecCCCe---EEEcCeEEEeecCcccccccccCCCEEEE--ccc-ccccCc
Q 004311 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK---KIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV-DCASGD 449 (762)
Q Consensus 377 V~k~~~d~~-G~l~~~RV~sG~l~~g~~v~~~~~~~---~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-~~~~Gd 449 (762)
|-.+|..+. |.++-++|..|++++|..+.+.+.|. .-+|..|. +...+|+++..|.=|+| .+. +.+.||
T Consensus 413 v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~----~~k~~v~e~~~g~ecgi~~~~~~~~~~gd 488 (501)
T 1zo1_I 413 VRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLR----RFKDDVNEVRNGMECGIGVKNYNDVRTGD 488 (501)
T ss_dssp EEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEE----ETTEEESEEETTCCEEEEBCCCTTCCTTC
T ss_pred EEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhc----ccCccccEECCCCEEEEEEcCcCCCCCCC
Confidence 334555455 99999999999999999999998875 33666666 45668999999999986 455 789999
Q ss_pred eeec
Q 004311 450 TFTD 453 (762)
Q Consensus 450 tL~~ 453 (762)
.|-.
T Consensus 489 ~~~~ 492 (501)
T 1zo1_I 489 VIEV 492 (501)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8853
No 373
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.31 E-value=0.25 Score=47.09 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 374
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.31 E-value=0.22 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.--.++|+|+.|+|||||++.|
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456999999999999999999
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.31 E-value=0.32 Score=46.52 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.+.|+|+|.+|+||||+...|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999975544
No 376
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.27 E-value=0.22 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.--.++|+|+.|+|||||++.|
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3356999999999999999999
No 377
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.16 E-value=0.22 Score=51.34 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=19.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~L 92 (762)
--.++|+|+.|+|||||++.|
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 346899999999999999999
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.07 E-value=0.23 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-.+++|+|+.|+|||||++.|+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999964
No 379
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.04 E-value=0.23 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
-.++|+|+.|+|||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999993
No 380
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.00 E-value=0.32 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.|+|+|.+|+||||+...|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976554
No 381
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.91 E-value=1.7 Score=49.77 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHH---HHhcCCceeeeeecCCCccccccCChhhhhhhcceeecceEEEe---------
Q 004311 69 MERLRNIGISAHIDSGKTTLTERI---LFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--------- 136 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~L---l~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--------- 136 (762)
....+.+.+.|..|+||||+.-+| +...|.-.-.-+.+....+..+.+........-+.-........
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~ 84 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQ 84 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHH
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHH
Q ss_pred ------------------------------------------------ecCeeEEEEeCC--------------------
Q 004311 137 ------------------------------------------------WKDYQINIIDTP-------------------- 148 (762)
Q Consensus 137 ------------------------------------------------~~~~~i~liDTP-------------------- 148 (762)
...+.+.+||||
T Consensus 85 ~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~ 164 (589)
T 1ihu_A 85 YRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFID 164 (589)
T ss_dssp HHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC-
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHHHhHHHHHHHHH
Q ss_pred -------------CCcCcHHHHHHHHH-hcC----EEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCC
Q 004311 149 -------------GHVDFTVEVERALR-VLD----GAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLD 203 (762)
Q Consensus 149 -------------G~~df~~~~~~al~-~aD----~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D 203 (762)
|..++......... .+| .+++|+.+.......+...++.+...+++. -+|+|+++
T Consensus 165 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 165 SNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp -----CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
No 382
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.87 E-value=0.9 Score=41.42 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-.+|.|.|.+|+|||+++.++-.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999843
No 383
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.82 E-value=0.33 Score=45.39 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
...||+|.|.+|+||||+...|....|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999865444
No 384
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.80 E-value=0.24 Score=45.78 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-.+++++|++|+|||||+..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999653
No 385
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=87.59 E-value=1.7 Score=43.15 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=59.2
Q ss_pred cCeeEEEEeCCCCc-----CcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChhH
Q 004311 138 KDYQINIIDTPGHV-----DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWK 211 (762)
Q Consensus 138 ~~~~i~liDTPG~~-----df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 211 (762)
.++.+.+||+||.. +......-+-....-+|+|+++..+-..++...++.+...++++. +++|+++........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46889999998742 111112222223356899999988777777777777788899974 889999865344556
Q ss_pred HHHHHHHHhccce
Q 004311 212 VLDQARSKLRHHC 224 (762)
Q Consensus 212 ~~~~i~~~l~~~~ 224 (762)
..+.+.+.++...
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 6777777777554
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.54 E-value=0.32 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 004311 74 NIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
-.+|+|+.|+|||||+++|.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997643
No 387
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.52 E-value=0.3 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
-.|+|+|+.|+|||||+++|+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999964
No 388
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.47 E-value=1.3 Score=43.88 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
-||.+.|.+|+||||++-++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 579999999999999977665
No 389
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.37 E-value=1.7 Score=46.09 Aligned_cols=41 Identities=15% Similarity=-0.017 Sum_probs=33.7
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (762)
+.+++|+-+..-....+.+.+..+.+.++|+ -+|+|++...
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 5788888887766777888899999999998 6899998754
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.33 E-value=0.36 Score=46.27 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.+.|+|+|.+|+||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999976544
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.31 E-value=0.4 Score=48.49 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
-..|+|+|++|||||||++.|...-|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357999999999999999999755454
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.28 E-value=0.31 Score=50.99 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.+-.-|+|+|+.|||||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999653
No 393
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.27 E-value=0.22 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.+++|+|+.|+|||||++.|+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999964
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.24 E-value=0.38 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
...|+|+|.+|+||||+...|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999976554
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.22 E-value=0.4 Score=45.58 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.+.|+|.|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999976544
No 396
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.19 E-value=0.38 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+-..|+|+|.+|+|||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 397
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.19 E-value=2.6 Score=45.09 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=28.9
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~ 175 (762)
..+.+.+||||... ...+..++..||.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc
Confidence 56899999999543 3567788999999999988754
No 398
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.14 E-value=0.39 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999975443
No 399
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=87.08 E-value=0.89 Score=45.17 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=55.0
Q ss_pred eeEEEEEEecccchHHHHHHHhcCCceeeccccCC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004311 668 PVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 735 (762)
Q Consensus 668 Pi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~ 735 (762)
--|++.|.+|.++.+.+++.|.+ -|.|..++..+ |.+...+.+|-.---.|.+.|++.|+|.|.+..
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 35788899999999999999954 46787776554 667888999988767789999999999998654
No 400
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.07 E-value=0.4 Score=47.12 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
..+|+++|.+|+||||+...|....+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 357999999999999999999765543
No 401
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.05 E-value=0.29 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
+--.++|+|+.|||||||++.|.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHh
Confidence 34568999999999999999994
No 402
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.98 E-value=0.3 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.-..++|+|+.|+|||||++.|.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 44579999999999999999993
No 403
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=86.90 E-value=3.1 Score=43.48 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=45.9
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHH----cCCCEE-EEEeCCCCCCCChhHH
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRL-AFINKLDRMGADPWKV 212 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----~~~p~i-iviNK~D~~~~~~~~~ 212 (762)
+.+.+.++|+||-..... ...++..||.+|+|+.+..--......+.+.+.. .+.++. +++|+.+. ...
T Consensus 162 d~~D~v~iD~~~~~~~~~-~~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----~~~ 235 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----TDE 235 (314)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----CHH
T ss_pred hcCceEeeccCCcchhhh-hHhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-----hhH
Confidence 357899999997643221 1246788999999998743111112222333322 233332 67787553 245
Q ss_pred HHHHHHHhccce
Q 004311 213 LDQARSKLRHHC 224 (762)
Q Consensus 213 ~~~i~~~l~~~~ 224 (762)
++++.+.++...
T Consensus 236 v~~~a~~~~~~~ 247 (314)
T 3fwy_A 236 VDRFCKETNFRR 247 (314)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHhCCeE
Confidence 667777776544
No 404
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.89 E-value=0.32 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
---++|+|+.|||||||++.|.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHHHHh
Confidence 3468999999999999999994
No 405
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.87 E-value=0.37 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
...-|+|+|++|||||||++.|...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998543
No 406
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=86.84 E-value=1.5 Score=49.35 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=57.0
Q ss_pred EEEEEEEeecC----CccEEEEEEEeeeecCCCeEEecCCCeEE---EcCeEEEeecCcccccccccCCCEEEE--cc-c
Q 004311 374 VALAFKLEEGR----FGQLTYLRIYEGVIRKGDFIINVNTGKKI---KVPRLVRMHSNEMEDIQEAHAGQIVAV--FG-V 443 (762)
Q Consensus 374 ~~~V~k~~~d~----~G~l~~~RV~sG~l~~g~~v~~~~~~~~~---ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l 443 (762)
.+-|-++|..+ .|.++-++|.+|++++|..+.+.+.|... +|..|. +....|+++.+|.=|+| .| .
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk----~~k~~v~ev~~g~ecgi~~~~~~ 524 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK----HHKDDTSVVKTGMDCGLSLDEEK 524 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC----CSSCCCSEEETTCEEEEESSSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc----ccCcccceEcCCCEEEEEEcCcc
Confidence 34444444433 37899999999999999999999988644 444444 56678999999999996 46 5
Q ss_pred -ccccCceee
Q 004311 444 -DCASGDTFT 452 (762)
Q Consensus 444 -~~~~GdtL~ 452 (762)
+.+.||+|-
T Consensus 525 ~~~~~gd~ie 534 (537)
T 3izy_P 525 IEFKVGDAII 534 (537)
T ss_dssp SSCSCCCEEE
T ss_pred cCCCCCCEEE
Confidence 789999873
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.83 E-value=0.37 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.115 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+.|+|.|.+|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999653
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.82 E-value=0.34 Score=46.01 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
++|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999966544
No 409
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=86.75 E-value=0.23 Score=49.84 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=58.7
Q ss_pred eeEEEEEEecccchHHHHHHHhcCCceeeccccCCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004311 668 PVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 735 (762)
Q Consensus 668 Pi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~ 735 (762)
.-|++.|.+|.++.|.+++.|.+-.|.|.+.+..++ +.+.+.+|-..--.+.+.|+..|+|.|.+.+
T Consensus 172 a~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 172 AHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp ECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 457888999999999999999998899988876666 8889999998878899999999999998654
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.70 E-value=0.43 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+|+|.|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976544
No 411
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.70 E-value=0.41 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+|+|.|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999965444
No 412
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.65 E-value=0.33 Score=49.55 Aligned_cols=22 Identities=36% Similarity=0.235 Sum_probs=19.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
--.++|+|+.|+|||||++.|.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999993
No 413
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.60 E-value=0.35 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-.+|+|+|++|+|||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999974
No 414
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.60 E-value=0.41 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-..|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999643
No 415
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.58 E-value=0.41 Score=47.16 Aligned_cols=25 Identities=32% Similarity=0.117 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.+|+|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976555
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.52 E-value=0.49 Score=47.53 Aligned_cols=29 Identities=14% Similarity=-0.127 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
.+..+|+|.|.+|+||||++..|....+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35578999999999999999999765554
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.48 E-value=0.53 Score=46.53 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=25.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI 99 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~g~i 99 (762)
.+.+.|.|+|+|||||+|....|...-|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 456778999999999999999998766653
No 418
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.39 E-value=0.37 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004311 74 NIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.38 E-value=0.42 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+-..|+|.|.+|+||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.36 E-value=0.39 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.|+|.|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999965544
No 421
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.28 E-value=0.48 Score=47.77 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+...|+|.|.+|+||||+.+.|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999998865444
No 422
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.28 E-value=0.29 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-.+++|+|+.|||||||+++|+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999964
No 423
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.27 E-value=0.99 Score=48.83 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=56.2
Q ss_pred cCeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCCCcchhH-------HHHHHHHHHcC--CC---EEEEEeCCCCC
Q 004311 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS-------ITVDRQMRRYE--VP---RLAFINKLDRM 205 (762)
Q Consensus 138 ~~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~gv~~qt-------~~~~~~~~~~~--~p---~iiviNK~D~~ 205 (762)
+++.+.|||||+... ..+..++..+|.+|+|+.+..-....+ ...++.+.+.+ .+ ++.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 358999999998775 346778889999999998753211112 22334444444 33 35578887742
Q ss_pred CCChhHHHHHHHHHhccceeeeeec
Q 004311 206 GADPWKVLDQARSKLRHHCAAVQVP 230 (762)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~p 230 (762)
.......+++.+.++.......+|
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred -hhHHHHHHHHHHHhcccccceecc
Confidence 123356677888888655444455
No 424
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.27 E-value=0.46 Score=48.12 Aligned_cols=26 Identities=31% Similarity=0.100 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
+.|+|+|.+|+|||||...|....+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCC
Confidence 46899999999999999999766553
No 425
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.24 E-value=0.46 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.032 Sum_probs=21.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.+..-|+|+|.+|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998854
No 426
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.23 E-value=0.48 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.--.++|+|+.|||||||++.|.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHh
Confidence 34569999999999999999994
No 427
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.21 E-value=0.45 Score=48.86 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.++++|++|+|||||+++|....+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5699999999999999999976544
No 428
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.07 E-value=0.36 Score=51.57 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
-.++|+|+.|||||||++.|.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999994
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.07 E-value=0.41 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-..|+++|.+|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988543
No 430
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.92 E-value=0.25 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.-..++|+|+.|+|||||++.|+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHH
Confidence 34579999999999999999984
No 431
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.92 E-value=0.23 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004311 74 NIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999654
No 432
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.92 E-value=0.37 Score=51.58 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
--.++|+|+.|||||||++.|.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHH
Confidence 3468999999999999999994
No 433
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.90 E-value=0.36 Score=45.64 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=17.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
...|.|.|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999965544
No 434
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.80 E-value=0.41 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
-.+|+|+|.+|+||||+.+.|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999976544
No 435
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.77 E-value=0.52 Score=45.50 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
..|+|+|.+|+||||+...|....+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976544
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.71 E-value=0.45 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004311 74 NIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-.+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999753
No 437
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.67 E-value=0.36 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
...++|+|+.|+|||||++.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999654
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.56 E-value=0.49 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 439
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.54 E-value=0.39 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.--.++|+|+.|||||||++.|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHh
Confidence 33468999999999999999994
No 440
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.41 E-value=0.4 Score=51.58 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll 93 (762)
-.++|+|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 468999999999999999994
No 441
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.40 E-value=0.4 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
---++|+|+.|||||||++.|.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHH
Confidence 3468999999999999999994
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.38 E-value=0.41 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004311 74 NIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-|++.|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999543
No 443
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.34 E-value=0.5 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
+.++++|++|+|||||++++....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999997543
No 444
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.29 E-value=0.4 Score=51.50 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.-..++|+|+.|||||||++.|.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHH
Confidence 33568999999999999999994
No 445
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.09 E-value=0.49 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
--.|+|+|+.|+|||||+++|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999754
No 446
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.07 E-value=0.55 Score=44.14 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..+++.|.|.+|+|||||+..+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999653
No 447
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.98 E-value=0.92 Score=48.43 Aligned_cols=25 Identities=36% Similarity=0.282 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-+.+.|.|.+++|||||+-.|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988754
No 448
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.91 E-value=0.55 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
+-..|.++|.+|||||||...|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997654
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.74 E-value=0.6 Score=46.40 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+..+|+|+|.+|+||||+...|...-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999976554
No 450
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.73 E-value=3.7 Score=46.05 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
..+.+.|.|++|+|||||+.++....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 347999999999999999999977654
No 451
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.73 E-value=0.64 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.-+.|.|.+|+|||||+-.++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999988754
No 452
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.56 E-value=0.85 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.-+.|.|.+|+|||||+-.++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHH
Confidence 46889999999999999888754
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.51 E-value=0.6 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004311 70 ERLRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll 93 (762)
.+...|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999986
No 454
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.51 E-value=0.64 Score=49.51 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-+.+.|.|++++|||||+-.++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988743
No 455
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.47 E-value=0.44 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.+-..|+|.|..|||||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998544
No 456
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.38 E-value=2.3 Score=45.07 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
...+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 457
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.31 E-value=0.72 Score=45.76 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=29.7
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (762)
+.-+++||-..-......+.+..+...++|+|++.-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 355788897765554444555665567999999998888654
No 458
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.01 E-value=0.62 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..++|+|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999874
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.00 E-value=0.68 Score=46.07 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=23.6
Q ss_pred cCCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 69 MERLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 69 ~~~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
..+-..|+|+|.+|+||||+...|....|
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556899999999999999999876545
No 460
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.97 E-value=0.63 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.052 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+|+|.|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
No 461
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.91 E-value=0.52 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.-..|+++|.+|+||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446899999999999999999976544
No 462
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.72 E-value=0.35 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
--.++|+|+.|||||||++.|.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHH
Confidence 3468999999999999999994
No 463
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.68 E-value=0.66 Score=49.00 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
+.|+|+|++++|||||...|...-+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5799999999999999999975443
No 464
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.65 E-value=0.66 Score=47.44 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
+.++|+|++|+|||||+.+|....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 569999999999999999997543
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.63 E-value=0.72 Score=44.60 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
...+|+++|.+||||||+.+.|....|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999865534
No 466
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.44 E-value=0.75 Score=45.10 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.+|+|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976554
No 467
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=83.43 E-value=2.4 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..|.++|.+|+||||+...|...
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999643
No 468
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.27 E-value=3 Score=43.59 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
...++|.|.|++|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999999544
No 469
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.27 E-value=1.3 Score=47.26 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-+.+.|.|++++|||||+..++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999754
No 470
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.21 E-value=0.65 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+-..|+++|.+|+||||+...|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999854
No 471
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.05 E-value=0.67 Score=48.92 Aligned_cols=27 Identities=26% Similarity=0.159 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
...+++++|++|+|||||++.+....+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 346799999999999999999976654
No 472
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.03 E-value=0.6 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004311 74 NIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-++|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999998643
No 473
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.81 E-value=4 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..++|.|.|++|+|||+|+.++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999654
No 474
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.78 E-value=0.64 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-..++|+|+.|+|||||++.|+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 335799999999999999999974
No 475
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.52 E-value=0.72 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
.-++|+|++|+|||||+..|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 476
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.37 E-value=0.35 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004311 72 LRNIGISAHIDSGKTTLTERIL 93 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll 93 (762)
--.++|+|+.|||||||++.|.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3468999999999999999994
No 477
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.37 E-value=0.95 Score=50.70 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 73 RNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
.-+.|.|.+|+|||||+-.++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHH
Confidence 468899999999999999887643
No 478
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.36 E-value=0.81 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004311 73 RNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+++.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998653
No 479
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.24 E-value=2.1 Score=38.81 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHH
Q 004311 71 RLRNIGISAHIDSGKTTLTERI 92 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~L 92 (762)
.-++|.|.|.+|+|||+++.++
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 3468999999999999999888
No 480
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.20 E-value=0.8 Score=46.09 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.++|.+.|++|+|||||+.++....+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999976543
No 481
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.11 E-value=0.83 Score=45.65 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004311 73 RNIGISAHIDSGKTTLTERILFYTGR 98 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~~~g~ 98 (762)
..|+|.|++|+||||+.+.|....|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999755443
No 482
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.05 E-value=3.1 Score=53.78 Aligned_cols=27 Identities=33% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
.+-++|.+.|++|+|||+|+-++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999997643
No 483
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.75 E-value=7.7 Score=40.50 Aligned_cols=21 Identities=10% Similarity=0.002 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 004311 75 IGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 75 I~iiG~~~aGKTTL~~~Ll~~ 95 (762)
+-|.|++++|||||+-.++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998887643
No 484
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=81.73 E-value=0.88 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004311 74 NIGISAHIDSGKTTLTERILFYTG 97 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~g 97 (762)
.|+|.|.+|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999966544
No 485
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.70 E-value=0.73 Score=43.18 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999653
No 486
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.50 E-value=0.92 Score=45.09 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
.+-..|+|.|.+|+||||+++.|...-
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999996543
No 487
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=81.44 E-value=0.85 Score=48.52 Aligned_cols=25 Identities=36% Similarity=0.235 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
--.++|+|+.|+|||||++.|+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999997654
No 488
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.43 E-value=0.74 Score=51.16 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
..++|+|+.|||||||++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6789999999999999999964
No 489
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.40 E-value=0.88 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 71 RLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 71 ~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..+++.|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999653
No 490
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.22 E-value=0.87 Score=48.99 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
..-+.++|+|++|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34468999999999999999999754
No 491
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.93 E-value=1.4 Score=47.25 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-+.+.|.|++++|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 357889999999999999988754
No 492
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.29 E-value=0.91 Score=44.90 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 72 LRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
-..++|+|++|+|||||+..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999753
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.14 E-value=6 Score=43.43 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
.++.++.+.|++|+|||||+..+....
T Consensus 48 ~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 455799999999999999999996554
No 494
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=79.67 E-value=6.9 Score=37.15 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=26.1
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004311 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (762)
Q Consensus 165 D~aIlVvDa~~gv~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (762)
+.-+++||=..-........+..+...++++++.....|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4668888866655333444445444558998888887773
No 495
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.62 E-value=1.5 Score=46.85 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=29.2
Q ss_pred CeeEEEEeCCCCcCcHHHHHHHHHhcCEEEEEEeCCC
Q 004311 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG 175 (762)
Q Consensus 139 ~~~i~liDTPG~~df~~~~~~al~~aD~aIlVvDa~~ 175 (762)
.+.+.|||||.... .....++..||.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 68999999997653 556778889999999999864
No 496
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=79.62 E-value=0.97 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004311 73 RNIGISAHIDSGKTTLTERILF 94 (762)
Q Consensus 73 rnI~iiG~~~aGKTTL~~~Ll~ 94 (762)
+.|.|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 497
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=79.18 E-value=1.3 Score=47.02 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004311 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (762)
Q Consensus 70 ~~irnI~iiG~~~aGKTTL~~~Ll~~ 95 (762)
.++++|+++|.+|+||||+...|...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999988643
No 498
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=79.06 E-value=1.1 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
--.++|+|+.|+|||||++.|....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3479999999999999999997654
No 499
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.99 E-value=1.1 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 004311 74 NIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 74 nI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
-.+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45799999999999999996543
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.88 E-value=5.2 Score=40.10 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004311 72 LRNIGISAHIDSGKTTLTERILFYT 96 (762)
Q Consensus 72 irnI~iiG~~~aGKTTL~~~Ll~~~ 96 (762)
-.+|.|.|.+|+|||+|+.++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3689999999999999999996543
Done!