Query 004315
Match_columns 761
No_of_seqs 276 out of 2296
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09525 lacZ beta-D-galactosi 100.0 8E-169 2E-173 1523.0 86.4 707 1-743 298-1025(1027)
2 PRK10340 ebgA cryptic beta-D-g 100.0 1E-168 3E-173 1525.7 87.4 725 1-755 282-1011(1021)
3 COG3250 LacZ Beta-galactosidas 100.0 1.1E-79 2.4E-84 717.8 33.9 557 1-628 249-807 (808)
4 PF02929 Bgal_small_N: Beta ga 100.0 4E-77 8.6E-82 630.2 24.6 273 455-743 3-276 (276)
5 PRK10150 beta-D-glucuronidase; 100.0 8.3E-60 1.8E-64 552.2 33.5 303 1-325 241-597 (604)
6 PF02836 Glyco_hydro_2_C: Glyc 100.0 6.8E-54 1.5E-58 460.9 23.6 286 39-324 1-297 (298)
7 KOG2230 Predicted beta-mannosi 99.9 3.5E-23 7.7E-28 223.1 23.4 179 1-195 278-493 (867)
8 PF03198 Glyco_hydro_72: Gluca 99.7 3.8E-16 8.3E-21 162.8 16.6 217 37-268 9-281 (314)
9 PF00150 Cellulase: Cellulase 99.4 5.2E-12 1.1E-16 134.2 16.1 208 48-268 3-279 (281)
10 PF02449 Glyco_hydro_42: Beta- 99.1 8.2E-10 1.8E-14 122.8 15.0 227 72-322 8-370 (374)
11 PLN03059 beta-galactosidase; P 99.1 3.8E-08 8.2E-13 115.8 26.4 186 38-234 29-256 (840)
12 COG3934 Endo-beta-mannanase [C 99.0 4.8E-10 1E-14 121.2 8.7 239 72-323 24-322 (587)
13 PF01301 Glyco_hydro_35: Glyco 98.9 4.8E-08 1E-12 105.9 17.5 143 45-193 1-178 (319)
14 COG1874 LacA Beta-galactosidas 98.6 3.7E-07 8E-12 106.1 12.9 138 42-185 4-182 (673)
15 PF14488 DUF4434: Domain of un 98.1 3.9E-05 8.5E-10 75.2 13.4 118 69-194 15-160 (166)
16 smart00633 Glyco_10 Glycosyl h 98.1 4E-05 8.7E-10 80.7 14.5 156 136-315 52-253 (254)
17 PF13204 DUF4038: Protein of u 98.0 4.2E-05 9.2E-10 82.0 12.3 176 48-235 8-242 (289)
18 PF12876 Cellulase-like: Sugar 97.9 1.7E-05 3.7E-10 69.3 5.3 60 150-209 1-86 (88)
19 KOG0496 Beta-galactosidase [Ca 97.7 0.0011 2.3E-08 76.1 17.1 142 36-185 17-189 (649)
20 PF07745 Glyco_hydro_53: Glyco 97.6 0.00035 7.6E-09 75.7 10.5 156 78-237 28-240 (332)
21 COG5309 Exo-beta-1,3-glucanase 97.3 0.01 2.2E-07 61.1 16.3 188 65-269 54-284 (305)
22 PF00331 Glyco_hydro_10: Glyco 97.1 0.0045 9.7E-08 67.5 12.4 231 68-319 13-319 (320)
23 COG3867 Arabinogalactan endo-1 96.7 0.077 1.7E-06 55.4 16.7 157 76-236 64-285 (403)
24 TIGR03356 BGL beta-galactosida 95.6 0.043 9.3E-07 62.3 8.9 93 72-170 52-163 (427)
25 PF01229 Glyco_hydro_39: Glyco 95.4 0.12 2.6E-06 59.7 12.2 230 72-317 37-357 (486)
26 COG2730 BglC Endoglucanase [Ca 95.1 0.1 2.2E-06 58.9 9.8 112 76-191 75-221 (407)
27 PRK13511 6-phospho-beta-galact 94.2 0.17 3.7E-06 58.1 9.2 92 72-170 52-162 (469)
28 PRK15014 6-phospho-beta-glucos 94.0 0.13 2.8E-06 59.1 7.5 92 72-170 67-180 (477)
29 TIGR01233 lacG 6-phospho-beta- 93.9 0.22 4.9E-06 57.1 9.1 92 72-170 51-161 (467)
30 COG3534 AbfA Alpha-L-arabinofu 93.8 0.51 1.1E-05 52.4 11.2 97 72-189 46-206 (501)
31 COG2723 BglB Beta-glucosidase/ 92.6 0.45 9.7E-06 53.7 8.7 92 72-170 57-170 (460)
32 PF06045 Rhamnogal_lyase: Rham 92.4 5.9 0.00013 39.9 15.4 143 439-602 6-153 (203)
33 PRK09852 cryptic 6-phospho-bet 91.6 0.58 1.3E-05 53.8 8.4 94 72-170 69-182 (474)
34 COG3693 XynA Beta-1,4-xylanase 91.2 25 0.00054 38.0 19.1 205 99-322 84-343 (345)
35 PRK09589 celA 6-phospho-beta-g 91.1 0.83 1.8E-05 52.6 9.1 92 72-170 65-178 (476)
36 PLN02814 beta-glucosidase 91.1 0.81 1.8E-05 53.0 9.0 92 72-170 75-187 (504)
37 PLN02849 beta-glucosidase 91.1 0.73 1.6E-05 53.3 8.6 92 72-170 77-189 (503)
38 PLN02998 beta-glucosidase 90.8 0.69 1.5E-05 53.4 8.1 92 72-170 80-192 (497)
39 PRK09593 arb 6-phospho-beta-gl 89.2 1.4 3.1E-05 50.7 8.9 92 72-170 71-184 (478)
40 PF00232 Glyco_hydro_1: Glycos 87.6 1 2.2E-05 51.7 6.4 92 72-170 56-168 (455)
41 KOG2024 Beta-Glucuronidase GUS 87.5 0.41 9E-06 49.4 2.8 96 23-118 80-196 (297)
42 PF01120 Alpha_L_fucos: Alpha- 82.2 22 0.00048 39.2 13.5 113 76-194 93-244 (346)
43 PF03659 Glyco_hydro_71: Glyco 79.9 7.1 0.00015 43.7 8.7 77 70-163 13-96 (386)
44 PF10633 NPCBM_assoc: NPCBM-as 78.3 9.4 0.0002 32.2 7.1 67 331-403 10-76 (78)
45 PF11797 DUF3324: Protein of u 76.7 39 0.00084 32.1 11.5 81 332-425 48-130 (140)
46 TIGR02635 RhaI_grampos L-rhamn 75.6 40 0.00086 37.7 12.8 102 60-164 26-137 (378)
47 smart00769 WHy Water Stress an 71.8 13 0.00027 33.1 6.5 50 331-381 20-70 (100)
48 PF09284 RhgB_N: Rhamnogalactu 70.5 9.8 0.00021 39.3 6.0 37 445-481 4-40 (249)
49 COG1470 Predicted membrane pro 65.9 29 0.00063 39.2 8.9 61 331-403 402-468 (513)
50 PF03168 LEA_2: Late embryogen 62.1 15 0.00032 32.0 5.0 50 331-381 1-51 (101)
51 PF14871 GHL6: Hypothetical gl 54.4 48 0.001 31.2 7.2 42 77-118 3-65 (132)
52 cd00019 AP2Ec AP endonuclease 54.3 95 0.0021 32.8 10.4 107 72-193 83-212 (279)
53 KOG0626 Beta-glucosidase, lact 52.4 65 0.0014 37.3 8.9 92 72-170 89-203 (524)
54 PF01263 Aldose_epim: Aldose 1 51.6 2.6E+02 0.0055 29.6 13.4 36 451-486 3-40 (300)
55 cd06570 GH20_chitobiase-like_1 50.8 1.1E+02 0.0023 33.4 10.1 53 70-122 14-93 (311)
56 COG2876 AroA 3-deoxy-D-arabino 48.7 1.1E+02 0.0024 32.2 9.2 61 49-118 43-117 (286)
57 PF07705 CARDB: CARDB; InterP 48.1 1E+02 0.0022 26.5 8.0 60 331-402 24-83 (101)
58 PLN02361 alpha-amylase 47.4 55 0.0012 36.9 7.4 68 47-119 7-98 (401)
59 smart00812 Alpha_L_fucos Alpha 47.0 2.7E+02 0.0059 31.2 12.9 111 77-189 84-226 (384)
60 PRK13209 L-xylulose 5-phosphat 46.6 98 0.0021 32.7 9.1 98 73-193 98-212 (283)
61 PRK05402 glycogen branching en 44.7 2.7E+02 0.0058 34.1 13.4 124 71-194 262-457 (726)
62 COG0296 GlgB 1,4-alpha-glucan 42.9 37 0.00081 40.3 5.4 46 72-117 163-234 (628)
63 PRK09936 hypothetical protein; 42.6 1.8E+02 0.0039 31.2 9.8 96 69-170 33-145 (296)
64 cd09024 Aldose_epim_lacX Aldos 42.3 2.3E+02 0.0051 30.1 11.2 27 457-483 6-34 (288)
65 PF00703 Glyco_hydro_2: Glycos 40.7 19 0.0004 31.7 2.0 17 21-37 94-110 (110)
66 TIGR02631 xylA_Arthro xylose i 40.2 5.1E+02 0.011 29.0 13.7 100 63-165 21-137 (382)
67 PF00128 Alpha-amylase: Alpha 39.6 30 0.00065 36.5 3.8 46 74-119 4-74 (316)
68 cd09019 galactose_mutarotase_l 38.3 2.6E+02 0.0056 30.4 10.9 29 560-589 125-153 (326)
69 PLN02784 alpha-amylase 34.7 1.3E+02 0.0029 37.1 8.3 69 47-119 498-590 (894)
70 smart00642 Aamy Alpha-amylase 34.6 1E+02 0.0023 30.1 6.4 48 72-119 17-92 (166)
71 PF11211 DUF2997: Protein of u 34.5 37 0.00081 26.1 2.5 18 565-582 1-18 (48)
72 PF00232 Glyco_hydro_1: Glycos 34.0 13 0.00028 42.6 -0.1 76 226-321 355-451 (455)
73 TIGR03234 OH-pyruv-isom hydrox 34.0 2.1E+02 0.0046 29.5 9.1 101 73-193 83-202 (254)
74 PRK12331 oxaloacetate decarbox 32.5 1.8E+02 0.0038 33.4 8.6 79 32-115 36-141 (448)
75 PRK09856 fructoselysine 3-epim 31.4 3.1E+02 0.0067 28.6 9.9 101 73-193 89-206 (275)
76 PRK12677 xylose isomerase; Pro 30.6 8.1E+02 0.017 27.5 13.8 100 64-166 21-137 (384)
77 PLN00196 alpha-amylase; Provis 30.3 1.6E+02 0.0035 33.5 7.9 65 52-119 25-114 (428)
78 PF03162 Y_phosphatase2: Tyros 30.1 2.1E+02 0.0046 27.9 7.7 75 77-162 22-97 (164)
79 PRK12595 bifunctional 3-deoxy- 30.1 2.2E+02 0.0047 31.7 8.6 60 49-117 116-189 (360)
80 PF02786 CPSase_L_D2: Carbamoy 29.8 85 0.0018 32.0 5.0 77 80-161 6-85 (211)
81 smart00481 POLIIIAc DNA polyme 29.8 1.3E+02 0.0029 24.0 5.3 40 76-115 17-59 (67)
82 PRK13397 3-deoxy-7-phosphohept 29.6 1.4E+02 0.0031 31.3 6.7 46 72-117 27-86 (250)
83 PRK13398 3-deoxy-7-phosphohept 29.6 2.9E+02 0.0062 29.3 9.1 59 50-117 26-98 (266)
84 KOG1066 Glucosidase II catalyt 29.5 2.4E+02 0.0053 33.9 8.9 181 28-234 373-568 (915)
85 PF01261 AP_endonuc_2: Xylose 29.1 2.1E+02 0.0045 28.0 7.8 95 73-182 70-182 (213)
86 cd06568 GH20_SpHex_like A subg 28.0 3.2E+02 0.007 29.9 9.5 53 70-122 14-100 (329)
87 PF12891 Glyco_hydro_44: Glyco 28.0 69 0.0015 33.3 3.9 54 136-192 102-176 (239)
88 PRK12360 4-hydroxy-3-methylbut 27.6 3.2E+02 0.0069 29.3 9.0 53 50-117 31-98 (281)
89 cd08574 GDPD_GDE_2_3_6 Glycero 27.6 5.1E+02 0.011 26.9 10.6 76 95-193 112-187 (252)
90 KOG0098 GTPase Rab2, small G p 27.0 2.6E+02 0.0056 28.2 7.4 111 29-155 38-172 (216)
91 PF11906 DUF3426: Protein of u 26.9 3.5E+02 0.0075 25.5 8.5 50 332-382 74-135 (149)
92 TIGR00542 hxl6Piso_put hexulos 26.4 5.4E+02 0.012 27.0 10.7 98 73-193 93-207 (279)
93 COG5608 LEA14-like dessication 25.9 1.1E+02 0.0024 29.5 4.5 72 309-381 31-105 (161)
94 cd06565 GH20_GcnA-like Glycosy 25.6 1.5E+02 0.0033 31.9 6.3 54 67-120 10-83 (301)
95 PF05913 DUF871: Bacterial pro 25.3 85 0.0018 34.8 4.3 47 72-118 12-68 (357)
96 PRK14042 pyruvate carboxylase 23.8 3.4E+02 0.0073 32.4 9.1 60 53-117 80-143 (596)
97 cd06564 GH20_DspB_LnbB-like Gl 22.7 4.5E+02 0.0099 28.6 9.4 53 70-122 13-107 (326)
98 PRK09856 fructoselysine 3-epim 22.6 4.9E+02 0.011 27.1 9.5 86 74-164 13-111 (275)
99 COG3623 SgaU Putative L-xylulo 22.2 9.1E+02 0.02 25.2 10.4 144 72-237 94-261 (287)
100 PF13380 CoA_binding_2: CoA bi 21.9 2.1E+02 0.0044 26.1 5.5 46 71-116 63-108 (116)
101 PF11589 DUF3244: Domain of un 21.9 5.7E+02 0.012 22.7 10.7 66 320-402 27-93 (106)
102 cd02742 GH20_hexosaminidase Be 21.5 1.6E+02 0.0034 31.9 5.4 53 70-122 12-97 (303)
103 PF07233 DUF1425: Protein of u 21.4 2.8E+02 0.006 24.3 6.0 46 331-381 29-80 (94)
104 TIGR00222 panB 3-methyl-2-oxob 21.3 5.2E+02 0.011 27.4 9.0 51 64-114 83-133 (263)
105 PRK01045 ispH 4-hydroxy-3-meth 21.2 4.7E+02 0.01 28.3 8.9 53 50-117 30-95 (298)
106 cd08582 GDPD_like_2 Glyceropho 20.8 4.5E+02 0.0098 26.8 8.5 129 33-193 24-158 (233)
107 cd08556 GDPD Glycerophosphodie 20.3 5.3E+02 0.011 24.8 8.6 71 96-193 48-118 (189)
108 PF02548 Pantoate_transf: Keto 20.1 3.3E+02 0.0071 28.9 7.1 89 64-152 84-173 (261)
No 1
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=8.2e-169 Score=1523.01 Aligned_cols=707 Identities=43% Similarity=0.731 Sum_probs=636.6
Q ss_pred CCCCCCCCCCceEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004315 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (761)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (761)
+|+|||+|+|+||+|+++|.+.+|+++|+.+++||||+|+++++.|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 298 ~p~lWs~e~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di 377 (1027)
T PRK09525 298 NPKLWSAETPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDI 377 (1027)
T ss_pred CCCcCCCCCCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHH
Confidence 69999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceE
Q 004315 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (761)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (761)
++||++|+|+||+||||++++||++|||+|||||+|+++++||+... ..+.++|+|.+++++++++||+|+||||||
T Consensus 378 ~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~---~~~~~dp~~~~~~~~~~~~mV~RdrNHPSI 454 (1027)
T PRK09525 378 LLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPM---NRLSDDPRWLPAMSERVTRMVQRDRNHPSI 454 (1027)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccc---cCCCCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999999999999999999996421 234678999999999999999999999999
Q ss_pred EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEeccCCCCCCCCCceecCCCCchH-----------HHHHHhhCCCCCCCe
Q 004315 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVW-----------DIVMIAKDPTETRPL 229 (761)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~-----------~~~~~~~~~~~~kP~ 229 (761)
||||+|||++++.++.+|++++|++||||||+|++++.....+|++++||..++ .++.+.+....+||+
T Consensus 455 i~WSlgNE~~~g~~~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~ 534 (1027)
T PRK09525 455 IIWSLGNESGHGANHDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKWSIKKWISLPGETRPL 534 (1027)
T ss_pred EEEeCccCCCcChhHHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchHHHHHHHhcCCCCCCE
Confidence 999999999999999999999999999999999976544567999999998763 577777764457999
Q ss_pred EeeccccccCCCCccHHHHHHHHHccCCceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCC
Q 004315 230 ILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTP 309 (761)
Q Consensus 230 i~~Eygh~~gn~~g~~~~yw~~~~~~p~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~p 309 (761)
|+|||||+|||+.|++++||+.|+++|.++|||||+|+|||+.+.+++|+.+|+||||||+.|||+|||+||||++||+|
T Consensus 535 i~cEY~Hamgn~~g~l~~yw~~~~~~~~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p 614 (1027)
T PRK09525 535 ILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFIWDWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTP 614 (1027)
T ss_pred EEEechhcccCcCccHHHHHHHHhcCCCeeEEeeEeccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhcceEEEee---cceEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEeeCCcCCCCCEEEEEec-CCCCc
Q 004315 310 HPALHEVKYVYQAIKVSLK---KGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELK-SSPWY 385 (761)
Q Consensus 310 kp~~~~~k~~~~pi~~~~~---~~~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~~~~v~p~~s~~i~lp-~~~~~ 385 (761)
+|+++|+|++||||.+... +++|+|+|+|+|++|+++.+.|+|..||++|++|++.+ +|+|+++++|+|| .+.
T Consensus 615 ~p~~~E~K~v~qpv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~~~~~G~~~~~g~~~~-~~~p~~~~~i~l~~~~~-- 691 (1027)
T PRK09525 615 HPALYEAKHAQQFFQFSLLSTTPLTIEVTSEYLFRHSDNELLHWSVALDGKPLASGEVPL-DLAPQGSQRITLPELPQ-- 691 (1027)
T ss_pred CccHHHHHhhcCcEEEEEccCCCcEEEEEEcccCCcccccEEEEEEEECCEEEEeeeEcc-ccCCCCceEEecCCCCC--
Confidence 9999999999999999763 35899999999999999999999999999999999975 8999999999999 431
Q ss_pred ccCCCCCCceEEEEEEEEeccccccccCCcEEEEEEEeeCCCCcCCCcccccCCCceEEEeeCCeEEEEccCcEEEEEEc
Q 004315 386 SQWNSCSAEEIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDI 465 (761)
Q Consensus 386 ~~~~~~~~~e~~L~i~~~lk~~t~wa~~G~~va~~Q~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~Fdk 465 (761)
...++|++|+|+++||++++||++||+||++||.|+.... .+.. ........++++++.+.|. +++|+++|||
T Consensus 692 ----~~~~~e~~l~~~~~~~~~~~~a~~g~~va~~Q~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~-~~~~~~~f~~ 764 (1027)
T PRK09525 692 ----PESAGQLWLNVEVVQPNATAWSEAGHRSAWQQWRLPEPLS-LPLP-TASHAAPQLTQDEQDFCIE-LGNQRWQFNR 764 (1027)
T ss_pred ----CCCCceEEEEEEEEECCCCcccCCCCEEEEEEEEeccCcc-cccc-cccCCCceEEEcCCeEEEE-ECCEEEEEEC
Confidence 2356799999999999999999999999999999963321 1100 1112334567777777765 6789999999
Q ss_pred CcccEEEEEECCEeeeccCcccceeecCCcCCCCCCCChh------hHHHHHcCccceeeEEEEEEEEEeCCceEEEEEE
Q 004315 466 QTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSY------YSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVV 539 (761)
Q Consensus 466 ~~G~l~s~~~~g~~ll~~g~~~n~wRaptDND~g~~~~~~------~~~W~~~g~~~~~~~~~~~~~~~~~~~~v~v~~~ 539 (761)
++|.|+||+++|++||.+||+|||||||||||+|++.... ...|+++|++++..++.++++...+ +.|+|++.
T Consensus 765 ~~G~l~s~~~~g~~~l~~~~~~~~wRaptdND~g~~~~~~~~~~~~~~~w~~ag~~~~~~~~~~~~~~~~~-~~v~v~~~ 843 (1027)
T PRK09525 765 QSGLLSQWWVGGKEQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGLYQLEARLLQCDADTLA-DAVLITTE 843 (1027)
T ss_pred CCceEEEEEECCEEeeccCCcCceECCCcccCcCccccccccccchHHHHHHcCCccceeEEEEEEEEecC-CeEEEEEE
Confidence 9999999999999999999999999999999998753322 3689999999998898888876644 45666555
Q ss_pred EecCCccccchhhhhhhcceeEEEEEEEEEecCCeEEEEEEEeeCCCCCCCcceeEEEEEecCCCCceEEEcCCCCCCch
Q 004315 540 YDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRGPFECYP 619 (761)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrGP~EnY~ 619 (761)
+..... ....++++++|+|+++|.|.|++++.+. +.+|.||||||+|.||++|++|+||||||+|||+
T Consensus 844 ~~~~~~-----------~~~~~~~~~~y~i~~~G~i~v~~~~~~~-~~~p~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~ 911 (1027)
T PRK09525 844 HAYQHQ-----------GKTLFISRKTYRIDGQGEMTIDVDVEVA-SDLPPPARIGLTCQLAQVAERVSWLGLGPHENYP 911 (1027)
T ss_pred EEeecC-----------CCccEEEEEEEEEeCCCEEEEEEEEEeC-CCCCCCceEEEEEECCccccccEEECCCCCCChh
Confidence 322111 0123678999999999999999999998 8889999999999999999999999999999999
Q ss_pred hhhcCcceeeeccccccccccccCccCCCCccceEEEEEeeCCcceEEEEeccCCCCeeEEeeCCCHHHHhccCCCCCCc
Q 004315 620 DRKAAAHVDVYEQIVGDMHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLV 699 (761)
Q Consensus 620 DR~~~a~~G~y~~tv~~~~~~Y~~PQe~Gnr~dvrw~~l~~~~g~gl~~~~~~~~~~f~fsa~~Yt~~~l~~a~H~~eL~ 699 (761)
|||+|+++|+|+++|++||+||++|||||||+||||++|+ ||.+ .+ .|+|||+|||+++|++|+|++||+
T Consensus 912 Drk~~a~~G~y~~~V~~~~~pYv~PQEnGnr~dvrw~~l~-----~l~v---~~--~~~fsa~~yt~~~L~~a~H~~eL~ 981 (1027)
T PRK09525 912 DRLLAACFGRWDLPLSDMHTPYIFPSENGLRCGTRELNYG-----RHQI---RG--DFHFNISRYSQQQLMETSHRHLLQ 981 (1027)
T ss_pred hhhhcCcEeEECCcHHHhCCCCCCccCCCCccceEEEEEc-----CeEE---Ee--eeeEEecCCCHHHHHhCcCHhhCC
Confidence 9999999999999999999999999999999999999994 3632 23 399999999999999999999999
Q ss_pred CCCeEEEEEccccccccCCCCCCCCCCCCccccCccEEEEEEEE
Q 004315 700 KEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 743 (761)
Q Consensus 700 ~~~~~~l~iD~~~~GvGg~~ScGp~~~~~Y~~~~~~y~~~f~l~ 743 (761)
+++.|+||||++||||||++||||.++|+|+|+.+.|+|+|+|+
T Consensus 982 ~~~~~~l~iD~~q~GvGg~~S~g~~~~~~y~~~~~~~~~~f~~~ 1025 (1027)
T PRK09525 982 AEEGTWLNIDGFHMGVGGDDSWSPSVHPEFLLSAGRYHYQLTWC 1025 (1027)
T ss_pred CCCCEEEEECcccCCCCCCCCCCCCCCHHHCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999986
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=1.2e-168 Score=1525.73 Aligned_cols=725 Identities=32% Similarity=0.582 Sum_probs=652.3
Q ss_pred CCCCCCCCCCceEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004315 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (761)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (761)
+|+|||+|+|+||+|+++|.+.+|+++|+++++||||+|+++++.|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 282 ~p~lWs~e~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl 361 (1021)
T PRK10340 282 QPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDI 361 (1021)
T ss_pred CCCcCCCCCCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHH
Confidence 69999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceE
Q 004315 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (761)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (761)
++||++|+|+||+||||++++|||+|||+|||||+|+++++||+.....+..+.++|+|.+++++++++||+|+||||||
T Consensus 362 ~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSI 441 (1021)
T PRK10340 362 QLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNHPSI 441 (1021)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999999999999999999997532222345678999999999999999999999999
Q ss_pred EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEeccCCCCCCCCCceecCCCCchHHHHHHhhCCCCCCCeEeeccccccCC
Q 004315 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGN 240 (761)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~~Eygh~~gn 240 (761)
+|||+|||+++|.++.+|++++|++||||||+|+++. ....+||++.||+..+.+..+.+.. .+||+|+|||+|+|||
T Consensus 442 i~WslGNE~~~g~~~~~~~~~~k~~DptR~v~~~~~~-~~~~~Dv~~~~Y~~~~~~~~~~~~~-~~kP~i~~Ey~hamgn 519 (1021)
T PRK10340 442 IIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDR-DAEVVDVISTMYTRVELMNEFGEYP-HPKPRILCEYAHAMGN 519 (1021)
T ss_pred EEEECccCccccHHHHHHHHHHHHhCCCceEEeCCCc-CccccceeccccCCHHHHHHHHhCC-CCCcEEEEchHhccCC
Confidence 9999999999999999999999999999999998764 3567999999999998887776653 3799999999999999
Q ss_pred CCccHHHHHHHHHccCCceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCCCCcHHHHHHhh
Q 004315 241 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 320 (761)
Q Consensus 241 ~~g~~~~yw~~~~~~p~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~ 320 (761)
++|++++||+.++++|.++|+|||+|+|||+...+++|..+|+||||||+.|+|++||+||||++||+|||+++++|++|
T Consensus 520 ~~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~ 599 (1021)
T PRK10340 520 GPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVI 599 (1021)
T ss_pred CCCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cceEEEe-e--cceEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEE
Q 004315 321 QAIKVSL-K--KGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIF 397 (761)
Q Consensus 321 ~pi~~~~-~--~~~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~ 397 (761)
|||++.. . .++|+|+|+|+|++|+++++.|+|..||++|++|++++|+|+|+++++|+||.+ ...++||+
T Consensus 600 ~pv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~l~~dG~~~~~g~~~~~~i~p~~~~~v~l~~~-------~~~~~e~~ 672 (1021)
T PRK10340 600 APVKIHALDLTRGELKVENKLWFTNLDDYTLHAEVRAEGETLASGQIKLRDVAPNSEAPLQITLP-------QLDAREAF 672 (1021)
T ss_pred ceEEEEEecCCCCEEEEEECccCCCccccEEEEEEEECCEEEEEeeeccCccCCCCceEEEecCC-------CCCCceEE
Confidence 9999975 3 579999999999999999999999999999999999888999999999999854 23456999
Q ss_pred EEEEEEeccccccccCCcEEEEEEEeeCCCCcCCCcccccCCCceEEEeeCCeEEEEccCcEEEEEEcCcccEEEEEECC
Q 004315 398 LTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEG 477 (761)
Q Consensus 398 L~i~~~lk~~t~wa~~G~~va~~Q~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~Fdk~~G~l~s~~~~g 477 (761)
|+|+++||++|+||++||+||++||.|+......++.......++.++++++.+.|. +++|+++|||++|.|+||+++|
T Consensus 673 l~~~~~~~~~~~wa~~g~~va~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~fdk~tG~l~s~~~~g 751 (1021)
T PRK10340 673 LNITVTKDSRTRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEEDRLSCTVR-GYNFAITFSKVSGKLTSWQVNG 751 (1021)
T ss_pred EEEEEEECCCccccCCCcEEEEEEEEecccccccccccccCCCCeeEEecCCEEEEE-eCCEEEEEECCcceEEEEEeCC
Confidence 999999999999999999999999999633211011111223456677777887775 5789999999999999999999
Q ss_pred EeeeccCcccceeecCCcCCCCCCCChhhHHHHHcCccceeeEEEEEEEEEeCCceEEEEEEEecCCccccchhhhhhhc
Q 004315 478 VSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKA 557 (761)
Q Consensus 478 ~~ll~~g~~~n~wRaptDND~g~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 557 (761)
++||.+||++||||||||||++. ....|+.+|++++..++.+++++..+ +.++|.+.+...+.. .
T Consensus 752 ~~ll~~~~~~nfwRAptDND~~~----~~~~W~~ag~~~l~~~~~~~~~~~~~-~~v~v~~~~~~~~~~----------~ 816 (1021)
T PRK10340 752 ESLLTREPKINFFKPMIDNHKQE----YEGLWQPNHLQIMQEHLRDFAVEQSD-GEVLIISRTVIAPPV----------F 816 (1021)
T ss_pred eeeecCCCccceEeCCccCCcch----hhHHHHHcCCccceeEEEEEEEEeCC-CeEEEEEEEEecCCc----------c
Confidence 99999999999999999999543 23679999999998899888877644 456666555433221 1
Q ss_pred ceeEEEEEEEEEecCCeEEEEEEEeeCCCCCCC-cceeEEEEEecCCCCceEEEcCCCCCCchhhhcCcceeeecccccc
Q 004315 558 KALFEIVIDYTIYGSGNVIVECNFKPNTSDLPP-LPRVGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVDVYEQIVGD 636 (761)
Q Consensus 558 ~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~-lpRiG~~~~lp~~~~~v~wyGrGP~EnY~DR~~~a~~G~y~~tv~~ 636 (761)
...++++++|+|+++|+|.|++++.+. +.+|. ||||||+|.||++|++|+||||||+|||+|||+|+.+|+|+++|++
T Consensus 817 ~~~~~~~~~y~i~~~G~i~v~~~~~~~-~~~p~~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~DRk~sa~~G~y~~~V~~ 895 (1021)
T PRK10340 817 DFGMRCTYIYRIAADGQVNVALSGERY-GDYPHMIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANLIDIYRSTVDA 895 (1021)
T ss_pred cceeEEEEEEEEcCCCEEEEEEEEEEC-CCCCccccceEEEEEcCccccccEEECCCCCCCchhhhhhcceeeecCcHHH
Confidence 124678999999999999999999998 77898 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCccCCCCccceEEEEEeeCCcceEEEEeccCCCCeeEEeeCCCHHHHhccCCCCCCcCCCeEEEEEcccccccc
Q 004315 637 MHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLG 716 (761)
Q Consensus 637 ~~~~Y~~PQe~Gnr~dvrw~~l~~~~g~gl~~~~~~~~~~f~fsa~~Yt~~~l~~a~H~~eL~~~~~~~l~iD~~~~GvG 716 (761)
||+||++|||||||+||||++|++.+|.||++ .+.++|+|||+|||+++|++|+|.+||++++.|+||||++|||||
T Consensus 896 ~~~pYi~PQEnGnr~dvrw~~l~~~~g~gl~v---~~~~~~~fsa~~ys~~~L~~a~H~~eL~~~~~~~l~iD~~q~GvG 972 (1021)
T PRK10340 896 MFENYPFPQNNGNRQHVRWTALTNRHGNGLLV---VPQRPINFSAWHYTQENIHAAQHTNELQKSDYITLNLDHQLLGLG 972 (1021)
T ss_pred hcCCCCCccCCCCccceEEEEEECCCCCEEEE---EeCCCcEEEccCCCHHHHHhCcCHhhCCCCCCEEEEEcccccCCc
Confidence 99999999999999999999999999999953 345689999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCccEEEEEEEEecc-CCCCchhhh
Q 004315 717 GDDSWTPCVHDKYLVPAVAYSFSIRLSPLT-AATSGYGIY 755 (761)
Q Consensus 717 g~~ScGp~~~~~Y~~~~~~y~~~f~l~p~~-~~~~~~~~~ 755 (761)
++||||.++|+|+|+.++|+|+|+|+|+. .+....+++
T Consensus 973 -~~SwGp~~~~~y~~~~~~~~~~f~l~p~~~~~~~~~~~~ 1011 (1021)
T PRK10340 973 -SNSWGSEVLDSYRVWFRDFSYGFTLLPVSGGEATAQSLA 1011 (1021)
T ss_pred -ccccCCCCCHHHCCCCCcEEEEEEEEEcCCCccchHHHh
Confidence 77999999999999999999999999994 333333333
No 3
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-79 Score=717.80 Aligned_cols=557 Identities=39% Similarity=0.659 Sum_probs=467.7
Q ss_pred CCCCCCCCCCceEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004315 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (761)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (761)
+|+||||+.|+||+|.++|.++ |.++|++..+||||+|+++.+.|+||||||++||+|||+++|..|+.+..+.|++||
T Consensus 249 ~p~lWsp~~P~LY~l~~~L~~~-~~~~d~~~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl 327 (808)
T COG3250 249 NPKLWSPEDPYLYRLVVTLKDA-NTLIDAEALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDL 327 (808)
T ss_pred CcccCCCCCCceEEEEEEEEeC-CceeeEEEeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHH
Confidence 6999999999999999999974 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceE
Q 004315 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (761)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (761)
++||++|+|+|||||||++++|||||||+|||||+|+++++||+. ++++|.+.+.+++++||+|+||||||
T Consensus 328 ~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~---------~~~~~~k~~~~~i~~mver~knHPSI 398 (808)
T COG3250 328 KLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMP---------DDPEWRKEVSEEVRRMVERDRNHPSI 398 (808)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCC---------CCcchhHHHHHHHHHHHHhccCCCcE
Confidence 999999999999999999999999999999999999999999864 68899999999999999999999999
Q ss_pred EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEeccCCCCCCCCCceecCCCCchHHHHHHhhCCCCCCCeEeeccccccCC
Q 004315 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGN 240 (761)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~~Eygh~~gn 240 (761)
||||+|||++.|.++..+..++|+.||+|++++.+.. ...+|+.+.||........+... .+|.++|||.|+|+|
T Consensus 399 iiWs~gNE~~~g~~~~~~~~~~k~~d~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---p~p~~l~~~~~~~~n 473 (808)
T COG3250 399 IIWSLGNESGHGSNHWALYRWFKASDPTRPVQYEGRG--TEATDILSPMYERVDEILYFPGS---PRPLILCEYAHAMGN 473 (808)
T ss_pred EEEeccccccCccccHHHHHHHhhcCCccceeccCcc--ceeeecccchhhcCccccccCCC---CCCceeecchHhhcc
Confidence 9999999999999999999999999999999998864 35789999999876655544443 489999999999999
Q ss_pred CCccHHHHHHHHHccCCceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCCCCcHHHHHHhh
Q 004315 241 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 320 (761)
Q Consensus 241 ~~g~~~~yw~~~~~~p~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~ 320 (761)
+.+....||..+.+++.++|+|+|+|.|+.+...++.|..+++|+|+|++.|++..||.+|.+.++|.+.|+.++.+..+
T Consensus 474 ~~~G~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~ 553 (808)
T COG3250 474 SYGGDYHYWGVFGEYPRLQGGFIWDWVDQRLIPIDETGNQAYAYGGDFGDYPNDRSFELNGLVFPDRQPNPGLKEAKVGT 553 (808)
T ss_pred CcCCceeeeehhccccccccceehhhcccccCcccccCccccccccccCCCccccchhcccccccccccCccchheeEEE
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cceEEEeecc--eEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEE
Q 004315 321 QAIKVSLKKG--TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFL 398 (761)
Q Consensus 321 ~pi~~~~~~~--~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~L 398 (761)
+...|...+. .+.+.|.+.|+.....++.|.+..+++...++.+.+-..+|+++.- .+... ....+ ++|
T Consensus 554 ~~~~f~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pg~~~~-~~~~~-------~~~k~-~~l 624 (808)
T COG3250 554 QFWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALLGETLGSLEWQLNDVPPGASWS-SLDEA-------LRPKA-LYL 624 (808)
T ss_pred eeeeeeccccCCceEEechhheeeeehhhhhhhhhccceEeeeEEEEeecCCCccccc-ccccc-------cCCcc-eEE
Confidence 9998864322 2789999999999999999988899999999999886677776543 33321 22334 999
Q ss_pred EEEEEeccccccccCCcEEEEEEEeeCCCCcCCCcccccCCCceEEEeeCCeEEEEccCcEEEEEEcCcccEEEEEECCE
Q 004315 399 TVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGV 478 (761)
Q Consensus 399 ~i~~~lk~~t~wa~~G~~va~~Q~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~Fdk~~G~l~s~~~~g~ 478 (761)
+.++...+.+.|+++ +|+.||.|.... ..... .+.+..+.+. +++..+.|+|++|.+.+ +.++
T Consensus 625 ~~r~~~~~~~~~~~~---~~~~~~~l~~~~----------~~~~~-~e~~~~~~~~-~~~~~~~~~~~~g~~~~--~~d~ 687 (808)
T COG3250 625 TRRFTQPELTAWSEA---AADGQFTLSEVS----------AAPLL-VEDERLLQVE-GDGKRLQFEKQSGTLPP--LLDK 687 (808)
T ss_pred EEEEeccccchhhhh---cccceeeecccc----------cchhh-eeccceeEEe-ecCceEEeccccCcccc--cccc
Confidence 999999999999999 999999997542 11112 2223344443 46678999999999999 3443
Q ss_pred eeeccCcccceeecCCcCCCCCCCChhhHHHHHcCccceeeEEEEEEEEEeCCceEEEEEEEecCCccccchhhhhhhcc
Q 004315 479 SVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAK 558 (761)
Q Consensus 479 ~ll~~g~~~n~wRaptDND~g~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~ 558 (761)
.|||+|+||. ........|+-+..+++.. ...+......+++......... ..
T Consensus 688 ---------a~~~~~~~~~---~p~~~i~~w~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~s------------~~ 740 (808)
T COG3250 688 ---------AFTRAPLDNI---DPNAWIEIWKLAELNRLLL---RGHVDFDAGKVLILAQYGIESS------------GK 740 (808)
T ss_pred ---------cccccccccC---CCccceeeeehhhhhHHHH---hcccccccCceeecccceEEec------------cc
Confidence 8999999992 2333557788555544332 2222222222222211111111 11
Q ss_pred eeEEEEEEEEEecCCeEEEEEEEeeCCCCCCCcceeEEEEEecCCCCceEEEcCCCCCCchhhhcCccee
Q 004315 559 ALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVD 628 (761)
Q Consensus 559 ~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrGP~EnY~DR~~~a~~G 628 (761)
........|++.++|.+.|.+++... ..|..+++|..+.++..+.. +|||+||.|||+||..++..+
T Consensus 741 ~~~~~~~~~~~~~~~a~~v~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~a~~~gp~~~~~~~~~a~~~~ 807 (808)
T COG3250 741 TEFGSFLIYRTAADGALLVKVDFERA--DLPDPARIGPGEQLAIKAEP-EALGLGPQENYPDRLLAACFD 807 (808)
T ss_pred cccceEEEEEEcCCcceEEEEecccc--cCCcchhhccCccccccccc-cccccCCCccccchhhhhhcc
Confidence 12446678999999999999999875 78888889999999999999 999999999999999998764
No 4
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=100.00 E-value=4e-77 Score=630.22 Aligned_cols=273 Identities=41% Similarity=0.759 Sum_probs=222.4
Q ss_pred ccCcEEEEEEcCcccEEEEEECCEeeeccCcccceeecCCcCCCCCCCChhhHHHHHcCccceeeEEEEEEEEEeCCc-e
Q 004315 455 HQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDY-F 533 (761)
Q Consensus 455 ~~~~~~~~Fdk~~G~l~s~~~~g~~ll~~g~~~n~wRaptDND~g~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~-~ 533 (761)
++++|+++|||++|.|+||+++|++||.+||+|||||||||||++.........|+.++++.+..++.++++...+++ .
T Consensus 3 ~g~~f~~~Fdk~~G~l~s~~~~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~ag~~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF02929_consen 3 SGKDFSYVFDKKTGTLTSYKYNGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDAGLDRLVTRVRSVKVEESDGDVA 82 (276)
T ss_dssp EETTEEEEEETTTTCEEEEEETTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHTTTTCEEEEEEEEEEEEEESESE
T ss_pred ccCCEEEEEECCCCeEEEEEECCEEeecCCCcccEEeCCCCCccccccchhHHHHHHcCccceeeEEeEEEEEecCCCce
Confidence 357899999999999999999999999999999999999999999887777788999999999999988888766544 3
Q ss_pred EEEEEEEecCCccccchhhhhhhcceeEEEEEEEEEecCCeEEEEEEEeeCCCCCCCcceeEEEEEecCCCCceEEEcCC
Q 004315 534 VKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRG 613 (761)
Q Consensus 534 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrG 613 (761)
|++...+..... ...+.++++|+|++||+|.|+++++|. +.+|.||||||+|.||++|++|+|||||
T Consensus 83 v~v~~~~~~~~~------------~~~~~~~~~y~i~~dG~i~v~~~~~~~-~~~p~lpRiGl~~~Lp~~~~~v~wyGrG 149 (276)
T PF02929_consen 83 VTVTARYAAPNK------------SWNFEVTITYTIYADGTIKVDMTFEPS-GDLPELPRIGLQFQLPKSFDNVEWYGRG 149 (276)
T ss_dssp EEEEEEEEETTC------------CEEEEEEEEEEEETTSEEEEEEEEEEE-TTSSC-SEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCc------------ceEEEEEEEEEEcCCCEEEEEEEEEeC-CCCCCccceEEEEEecCcceeEEEECCC
Confidence 556555543321 235889999999999999999999998 7799999999999999999999999999
Q ss_pred CCCCchhhhcCcceeeeccccccccccccCccCCCCccceEEEEEeeCCcceEEEEeccCCCCeeEEeeCCCHHHHhccC
Q 004315 614 PFECYPDRKAAAHVDVYEQIVGDMHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRAT 693 (761)
Q Consensus 614 P~EnY~DR~~~a~~G~y~~tv~~~~~~Y~~PQe~Gnr~dvrw~~l~~~~g~gl~~~~~~~~~~f~fsa~~Yt~~~l~~a~ 693 (761)
|+|||+|||+||++|+|+++|++||+||++|||||||+||||++|+|++|.||++ .++.+|+|||+|||+++|++|+
T Consensus 150 P~EnY~DRk~~a~~G~y~~~v~~~~~~Y~~PQE~Gnr~dvrw~~l~~~~g~gl~v---~~~~~~~fsa~~yt~~~L~~a~ 226 (276)
T PF02929_consen 150 PHENYPDRKTGAFLGIYESTVDDMYTPYIRPQENGNRTDVRWLSLTDSDGGGLLV---TSDDPFSFSASPYTPEELEEAK 226 (276)
T ss_dssp SS--BTTB-SSSEEEEEEEEHHHHS---SS--S---EEEEEEEEEEETTSEEEEE---EEEEEEEEEEESS-HHHHHH-S
T ss_pred CCCCCccccccCCcCEEcCcHHHcCcCCCCcccCCCcceeEEEEEEcCCCCeEEE---ecCCCeEEEEEeCchhHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999954 3457999999999999999999
Q ss_pred CCCCCcCCCeEEEEEccccccccCCCCCCCCCCCCccccCccEEEEEEEE
Q 004315 694 HNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 743 (761)
Q Consensus 694 H~~eL~~~~~~~l~iD~~~~GvGg~~ScGp~~~~~Y~~~~~~y~~~f~l~ 743 (761)
|.+||++++.|+||||++||||||++||||.++|+|+|++++|+|+|+|+
T Consensus 227 H~~eL~~~~~~~l~lD~~q~GvG~d~ScGp~~~~~Y~l~~~~~~~~f~l~ 276 (276)
T PF02929_consen 227 HTYELPKSDRTYLNLDYAQRGVGGDNSCGPDVLPEYRLKPKPYEFSFTLR 276 (276)
T ss_dssp SGGGSEEESEEEEEEEEEE-----STTSS--S-GGGS-CSSEEEEEEEE-
T ss_pred ccccCCCCCCEEEEEecccCCcccccccCCCCCHHHCcCCccEEEEEEEC
Confidence 99999999999999999999999978999999999999999999999985
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=8.3e-60 Score=552.16 Aligned_cols=303 Identities=29% Similarity=0.465 Sum_probs=253.4
Q ss_pred CCCCCCCCCCceEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004315 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (761)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (761)
+|+||||++|+||+|+++|.+ +|+++|+.+++||||+|+++++.|+|||+||+|||+|+|++.+..|++++++.+++||
T Consensus 241 ~p~lW~p~~P~LY~l~v~l~~-~g~~~d~~~~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~ 319 (604)
T PRK10150 241 NPHLWQPGEGYLYTLCVELAK-SGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDH 319 (604)
T ss_pred CCcccCCCCCceEEEEEEEee-CCeeEEEEEeeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHH
Confidence 699999999999999999975 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecccccCCcccc------------ccCCCCCCCHHHHHHHHHHHH
Q 004315 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFS------------EHLKHPTMEPSWAAAMMDRVI 148 (761)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~ 148 (761)
++||++|+|+||+||||++++|||+|||+|||||+|+|+. |+..+ ..+.....+|+|.++++++++
T Consensus 320 ~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 320 NLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAV--GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccc--cccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999853 32110 011112234789999999999
Q ss_pred HHHHHhCCCceEEEEeCCCCCCCC-----CcHHHHHHHHHhhCCCCeEeccCC-------CCCCCCCceecCC-CCc---
Q 004315 149 GMVERDKNHASIICWSLGNEAGHG-----PNHSAAAGWIRGKDPSRLLHYEGG-------GSRTPSTDIVCPM-YMR--- 212 (761)
Q Consensus 149 ~mV~r~rNHPSIi~WslgNE~~~g-----~~~~~~~~~ik~~DptRpv~~~~~-------~~~~~~~Di~~~~-Y~~--- 212 (761)
+||+|+||||||||||+|||+..+ ..+++|.+++|++||||||++++. ......+|+++.+ |..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~~~~~~~~~~Dv~~~N~Y~~wy~ 477 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASREQGAREYFAPLAELTRKLDPTRPVTCVNVMFATPDTDTVSDLVDVLCLNRYYGWYV 477 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccchhHHHHHHHHHHHHHhhCCCCceEEEecccCCcccccccCcccEEEEcccceecC
Confidence 999999999999999999998654 235789999999999999999763 1124579999963 321
Q ss_pred ----h--------HHHHHHhhCCCCCCCeEeeccc-------cccCCCCcc-------HHHHHHHHHccCCceeEeeeec
Q 004315 213 ----V--------WDIVMIAKDPTETRPLILCEYS-------HAMGNSNGN-------IHEYWEAIDSTFGLQGGFIWDW 266 (761)
Q Consensus 213 ----~--------~~~~~~~~~~~~~kP~i~~Eyg-------h~~gn~~g~-------~~~yw~~~~~~p~~~Gg~vW~~ 266 (761)
. ..+..+.+.. +||+++|||| |+|+++.++ +++||+.++++|.++|+|||+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~--~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~ 555 (604)
T PRK10150 478 DSGDLETAEKVLEKELLAWQEKL--HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNF 555 (604)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEEee
Confidence 1 1222233322 8999999999 889988877 7899999999999999999999
Q ss_pred ccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCCCCcHHHHHHhhcceEE
Q 004315 267 VDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKV 325 (761)
Q Consensus 267 ~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~~pi~~ 325 (761)
+|+... .| .+.|+|+ .+|||+.||+|||+++++|++|+|+.+
T Consensus 556 ~D~~~~----~g--~~~~~g~-----------~~Gl~~~dr~~k~~~~~~k~~~~~~~~ 597 (604)
T PRK10150 556 ADFATS----QG--ILRVGGN-----------KKGIFTRDRQPKSAAFLLKKRWTGIPF 597 (604)
T ss_pred eccCCC----CC--CcccCCC-----------cceeEcCCCCChHHHHHHHHHhhcCcc
Confidence 996421 11 1334442 579999999999999999999999863
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=100.00 E-value=6.8e-54 Score=460.91 Aligned_cols=286 Identities=34% Similarity=0.571 Sum_probs=227.2
Q ss_pred EEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecc
Q 004315 39 VSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (761)
Q Consensus 39 i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~ 118 (761)
||+++++|+||||||+|||+|+|+++|..|.+++.+.+++||.+||++|+|+||++|+|++++||++|||+||+||+|+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEecc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccc-ccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEeccCCC
Q 004315 119 IETHGFYFS-EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGG 197 (761)
Q Consensus 119 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~ 197 (761)
.++|+.... ........+|+|.+.+++++++||+|+|||||||+|++|||+.....++.|.+++|++||||||+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~~~~~~~~l~~~~k~~DptRpv~~~~~~ 160 (298)
T PF02836_consen 81 LEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESDYREFLKELYDLVKKLDPTRPVTYASNG 160 (298)
T ss_dssp -BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSHHHHHHHHHHHHHHHH-TTSEEEEETGT
T ss_pred ccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCccccchhHHHHHHHhcCCCCceeecccc
Confidence 887775421 1111245689999999999999999999999999999999996556688999999999999999998763
Q ss_pred C----CCCCCceecCCCCc---hHHHHHHhhC--CCCCCCeEeeccccccCCCCccHHHHHHHHHccCCceeEeeeeccc
Q 004315 198 S----RTPSTDIVCPMYMR---VWDIVMIAKD--PTETRPLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVD 268 (761)
Q Consensus 198 ~----~~~~~Di~~~~Y~~---~~~~~~~~~~--~~~~kP~i~~Eygh~~gn~~g~~~~yw~~~~~~p~~~Gg~vW~~~D 268 (761)
. .....|++..+|.. ...+..+.+. ...+||+|+||||+.+.++.+...++++.....+..++.++|.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~~~~~~ 240 (298)
T PF02836_consen 161 WDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFIWDYQD 240 (298)
T ss_dssp SGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEESHSBH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhhhhhhh
Confidence 1 11223555556654 3334433332 2348999999999999998889999999999899999999999999
Q ss_pred CCceeecCC-CceEeeecCccCCCCCCcccccCCccCCCCCCCCcHHHHHHhhcceE
Q 004315 269 QGLLRELAD-GTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIK 324 (761)
Q Consensus 269 ~~~~~~~~~-g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~~pi~ 324 (761)
+........ +..+.-+++||.+.++|.++|.+|||++||+||++++++|++|+||.
T Consensus 241 ~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~~~v~ 297 (298)
T PF02836_consen 241 QAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQWSPVQ 297 (298)
T ss_dssp HHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHHHSEE
T ss_pred hhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHhhhhc
Confidence 876544333 33445578899999999999999999999999999999999999996
No 7
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.5e-23 Score=223.10 Aligned_cols=179 Identities=19% Similarity=0.236 Sum_probs=143.4
Q ss_pred CCCCCCC---CCCceEEEEEEEEeCCCCeEEEEEEEEeeEEEEEe--------CC--EEEECCEEEEEEeeecCCCCCCC
Q 004315 1 MPRLWSA---EQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKA--------PK--QLLVNGNPVVIRGVNRHEHHPRV 67 (761)
Q Consensus 1 ~p~lWs~---e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~i~~~--------~~--~f~lNGk~v~lrGvn~h~~~p~~ 67 (761)
+|..|+| +...||.+++.. .|... +.++|||+++.. ++ .|.+||.|++|||.|+.+..-..
T Consensus 278 ~~e~wwp~g~g~q~~y~~~v~~---gg~~~---ekki~frtvelv~~p~kp~~g~nfyfkin~~pvflkg~nwip~s~f~ 351 (867)
T KOG2230|consen 278 EPERWWPNGMGEQKLYDVVVSM---GGQVK---EKKIGFKTVELVQDPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFR 351 (867)
T ss_pred cccccCCCCCCcceeEEEEEec---Cceee---eeeeeeEEEEEeecCCCCCCCceeEEEEcCcEEEeecCCccChHHHH
Confidence 4678997 788999988766 45444 449999999973 12 67799999999999997654333
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEcCC--CCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHH
Q 004315 68 GKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMD 145 (761)
Q Consensus 68 g~~~~~e~~~~dl~~mK~~g~N~vR~~h--~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 145 (761)
...+.|.++.-|+-.+++|+|++|+|. .-++.+||++||++||+||+++.+.|.=+ | .+.+|...+.+
T Consensus 352 -dr~t~~~~~~LL~Sv~e~~MN~lRVWGGGvYEsd~FY~lad~lGilVWQD~MFACAlY--------P-t~~eFl~sv~e 421 (867)
T KOG2230|consen 352 -DRENIAKTEFLLDSVAEVGMNMLRVWGGGVYESDYFYQLADSLGILVWQDMMFACALY--------P-TNDEFLSSVRE 421 (867)
T ss_pred -hhHHHHHHHHHHHHHHHhCcceEEEecCccccchhHHHHhhhccceehhhhHHHhhcc--------c-CcHHHHHHHHH
Confidence 456788889999999999999999964 44678999999999999999999877533 3 36789999999
Q ss_pred HHHHHHHHhCCCceEEEEeCCCCCC-------CCCc---------------HHHHHHHHHhhCCCCeEeccC
Q 004315 146 RVIGMVERDKNHASIICWSLGNEAG-------HGPN---------------HSAAAGWIRGKDPSRLLHYEG 195 (761)
Q Consensus 146 ~~~~mV~r~rNHPSIi~WslgNE~~-------~g~~---------------~~~~~~~ik~~DptRpv~~~~ 195 (761)
+++..+.|.+.|||||+||..||.. ++.. .+-+.++.+.-|++||....|
T Consensus 422 EV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SS 493 (867)
T KOG2230|consen 422 EVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSS 493 (867)
T ss_pred HHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecC
Confidence 9999999999999999999999983 3321 123556667789999977654
No 8
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.69 E-value=3.8e-16 Score=162.83 Aligned_cols=217 Identities=17% Similarity=0.258 Sum_probs=122.4
Q ss_pred EEEEEeCCEEE--ECCEEEEEEeeecCCCCCC---C-CCC-CCHHHHHHHHHHHHHcCCcEEEcCCCC---ChhHHHHHH
Q 004315 37 RQVSKAPKQLL--VNGNPVVIRGVNRHEHHPR---V-GKT-NIESCMVKDLVLMKQNNINAVRNSHYP---QHPRWYELC 106 (761)
Q Consensus 37 R~i~~~~~~f~--lNGk~v~lrGvn~h~~~p~---~-g~~-~~~e~~~~dl~~mK~~g~N~vR~~h~p---~~~~~~dlc 106 (761)
-.|+++|++|+ -||++|+||||.+++.... . -.. .+.+.+++|+.+||++|+|+||+.+.- +|..++.++
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~ 88 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAF 88 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHH
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHH
Confidence 46889999999 8999999999999764321 0 011 257999999999999999999996543 578999999
Q ss_pred HhcCCEEEeecccccCCccccccCCCCCCCH--HHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCc----------
Q 004315 107 DLFGLYMIDEANIETHGFYFSEHLKHPTMEP--SWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPN---------- 174 (761)
Q Consensus 107 De~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~---------- 174 (761)
++.||||+.+++...... ...+| .|...++++...+|..+..+|.+++...|||......
T Consensus 89 ~~aGIYvi~Dl~~p~~sI--------~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKA 160 (314)
T PF03198_consen 89 ADAGIYVILDLNTPNGSI--------NRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKA 160 (314)
T ss_dssp HHTT-EEEEES-BTTBS----------TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHH
T ss_pred HhCCCEEEEecCCCCccc--------cCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHH
Confidence 999999999986432211 13355 8999999999999999999999999999999976542
Q ss_pred -HHHHHHHHHhhCC-CCeEeccCCC---------------CCCCCCceecC-CCCc----------hHHHHHHhhCCCCC
Q 004315 175 -HSAAAGWIRGKDP-SRLLHYEGGG---------------SRTPSTDIVCP-MYMR----------VWDIVMIAKDPTET 226 (761)
Q Consensus 175 -~~~~~~~ik~~Dp-tRpv~~~~~~---------------~~~~~~Di~~~-~Y~~----------~~~~~~~~~~~~~~ 226 (761)
.+.|.+++|+.-. +=||-|..+. ......|+++. .|.+ ...+.+..++ -.
T Consensus 161 avRD~K~Yi~~~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~--y~ 238 (314)
T PF03198_consen 161 AVRDMKAYIKSKGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSN--YS 238 (314)
T ss_dssp HHHHHHHHHHHSSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT---S
T ss_pred HHHHHHHHHHhcCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhC--CC
Confidence 4567778887654 2367665321 11235677773 4642 1223333333 37
Q ss_pred CCeEeeccccccCCCCccHHHHHHHHH------ccCCceeEeeeeccc
Q 004315 227 RPLILCEYSHAMGNSNGNIHEYWEAID------STFGLQGGFIWDWVD 268 (761)
Q Consensus 227 kP~i~~Eygh~~gn~~g~~~~yw~~~~------~~p~~~Gg~vW~~~D 268 (761)
.|++++|||.- ... .+-|..+. -.+-..||++.+|..
T Consensus 239 vPvffSEyGCn---~~~--pR~f~ev~aly~~~Mt~v~SGGivYEy~~ 281 (314)
T PF03198_consen 239 VPVFFSEYGCN---TVT--PRTFTEVPALYSPEMTDVWSGGIVYEYFQ 281 (314)
T ss_dssp S-EEEEEE------SSS--S---THHHHHTSHHHHTTEEEEEES-SB-
T ss_pred CCeEEcccCCC---CCC--CccchHhHHhhCccchhheeceEEEEEec
Confidence 99999999952 111 12222221 125688999999863
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.39 E-value=5.2e-12 Score=134.16 Aligned_cols=208 Identities=22% Similarity=0.336 Sum_probs=132.2
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC----C--CCh------------hHHHHHHHhc
Q 004315 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH----Y--PQH------------PRWYELCDLF 109 (761)
Q Consensus 48 lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h----~--p~~------------~~~~dlcDe~ 109 (761)
.||++|.++|+|.|.. .....+++++.||++|+|+||+.. + +.. .+++++|.++
T Consensus 3 ~~G~~v~~~G~n~~w~--------~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWY--------NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAY 74 (281)
T ss_dssp TTSEBEEEEEEEETTS--------GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEeeeeecccC--------CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhC
Confidence 4899999999999711 112688999999999999999921 1 111 1479999999
Q ss_pred CCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCc---------------
Q 004315 110 GLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPN--------------- 174 (761)
Q Consensus 110 Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~--------------- 174 (761)
||+|+.++--. .++... .......+...+.+.+.++.++.|+++||.|++|.|.||+.....
T Consensus 75 gi~vild~h~~-~~w~~~--~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~ 151 (281)
T PF00150_consen 75 GIYVILDLHNA-PGWANG--GDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDW 151 (281)
T ss_dssp T-EEEEEEEES-TTCSSS--TSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHH
T ss_pred CCeEEEEeccC-cccccc--ccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhH
Confidence 99999876211 111100 001122334445555668899999999999999999999976411
Q ss_pred HHHHHHHHHhhCCCCeEeccCCC----------CC---CCCCceecCC-CCch------------------HHHHHHhh-
Q 004315 175 HSAAAGWIRGKDPSRLLHYEGGG----------SR---TPSTDIVCPM-YMRV------------------WDIVMIAK- 221 (761)
Q Consensus 175 ~~~~~~~ik~~DptRpv~~~~~~----------~~---~~~~Di~~~~-Y~~~------------------~~~~~~~~- 221 (761)
...+++.||+.||+++|..++.. .. ....++++.| |... ..+.....
T Consensus 152 ~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T PF00150_consen 152 YQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW 231 (281)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceeecCCCccccccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH
Confidence 35778899999999999876521 00 1234566643 3310 11111111
Q ss_pred CCCCCCCeEeeccccccCCC---CccHHHHHHHHHccCCceeEeeeeccc
Q 004315 222 DPTETRPLILCEYSHAMGNS---NGNIHEYWEAIDSTFGLQGGFIWDWVD 268 (761)
Q Consensus 222 ~~~~~kP~i~~Eygh~~gn~---~g~~~~yw~~~~~~p~~~Gg~vW~~~D 268 (761)
....++|++++|||...... ......+.+.+.++ -+|.+.|+|..
T Consensus 232 ~~~~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~W~~~~ 279 (281)
T PF00150_consen 232 AKKNGKPVVVGEFGWSNNDGNGSTDYADAWLDYLEQN--GIGWIYWSWKP 279 (281)
T ss_dssp HHHTTSEEEEEEEESSTTTSCHHHHHHHHHHHHHHHT--TCEEEECEESS
T ss_pred HHHcCCeEEEeCcCCcCCCCCcCHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 01237899999999763332 12233445555554 67899999853
No 10
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.11 E-value=8.2e-10 Score=122.84 Aligned_cols=227 Identities=23% Similarity=0.318 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCCC------CCh--------hHHHHHHHhcCCEEEeecccccCC-cc-----------
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSHY------PQH--------PRWYELCDLFGLYMIDEANIETHG-FY----------- 125 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~------p~~--------~~~~dlcDe~Gi~V~~e~~~~~~g-~~----------- 125 (761)
++|.+++||++||++|+|+||+... |.. ++++++|.++||.|+.-.+..... +.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~ 87 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVD 87 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccC
Confidence 5699999999999999999997332 211 258999999999999766422110 00
Q ss_pred ------cccc-CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCC-------------------------
Q 004315 126 ------FSEH-LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP------------------------- 173 (761)
Q Consensus 126 ------~~~~-~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~------------------------- 173 (761)
..+. .....++|.+++.+.+-++++++|+++||+|++|.+.||.++..
T Consensus 88 ~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN 167 (374)
T PF02449_consen 88 ADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALN 167 (374)
T ss_dssp TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHH
T ss_pred CCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHH
Confidence 0000 01113578899888888999999999999999999999975410
Q ss_pred ----------------------------c------------------HHHHHHHHHhhCCCCeEeccCCCC---------
Q 004315 174 ----------------------------N------------------HSAAAGWIRGKDPSRLLHYEGGGS--------- 198 (761)
Q Consensus 174 ----------------------------~------------------~~~~~~~ik~~DptRpv~~~~~~~--------- 198 (761)
+ +..+.+.||+.||.+||+....+.
T Consensus 168 ~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~ 247 (374)
T PF02449_consen 168 RAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYFK 247 (374)
T ss_dssp HHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HHH
T ss_pred HHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHHH
Confidence 0 234677899999999999643221
Q ss_pred CCCCCceecC-CCCc---------hHH---HHHHhhCCCCCCCeEeeccccccC-----C---CCccHH-HHHHHHHccC
Q 004315 199 RTPSTDIVCP-MYMR---------VWD---IVMIAKDPTETRPLILCEYSHAMG-----N---SNGNIH-EYWEAIDSTF 256 (761)
Q Consensus 199 ~~~~~Di~~~-~Y~~---------~~~---~~~~~~~~~~~kP~i~~Eygh~~g-----n---~~g~~~-~yw~~~~~~p 256 (761)
.....|+++. .|+. ... ..+.......+||++++|.--+.. + .+|.+. ..|..+. -
T Consensus 248 ~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~~~~~A--~ 325 (374)
T PF02449_consen 248 WAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWSWQAIA--H 325 (374)
T ss_dssp HGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHHHHHHHHHH--T
T ss_pred HHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHHHHHHHHHH--H
Confidence 0235787774 4543 000 111111113489999999842211 1 123332 2344444 3
Q ss_pred CceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCC-CCCCcHHHHHHhhcc
Q 004315 257 GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDR-TPHPALHEVKYVYQA 322 (761)
Q Consensus 257 ~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr-~pkp~~~~~k~~~~p 322 (761)
++.|...|+|... ..|.+. ...||++.|. +|...+.|++++-+-
T Consensus 326 Ga~~i~~~~wr~~------~~g~E~----------------~~~g~~~~dg~~~~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 326 GADGILFWQWRQS------RFGAEQ----------------FHGGLVDHDGREPTRRYREVAQLGRE 370 (374)
T ss_dssp T-S-EEEC-SB--------SSSTTT----------------TS--SB-TTS--B-HHHHHHHHHHHH
T ss_pred hCCeeEeeeccCC------CCCchh----------------hhcccCCccCCCCCcHHHHHHHHHHH
Confidence 5667778887432 112211 1359999999 899999999987543
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=99.06 E-value=3.8e-08 Score=115.82 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=125.7
Q ss_pred EEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----CCCCChh-----------H
Q 004315 38 QVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQHP-----------R 101 (761)
Q Consensus 38 ~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~-----~h~p~~~-----------~ 101 (761)
.|+++++.|+|||+|++|.+...|+. +++++.++..|+.||++|+|+|=| .|-|... +
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~------R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~ 102 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVK 102 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccC------cCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHH
Confidence 68999999999999999999999853 468999999999999999999998 3555432 6
Q ss_pred HHHHHHhcCCEEEeec-cc-----ccCCccccc----cCCCCCCCHHHHHHHHHHHHHHHHHhC-------CCceEEEEe
Q 004315 102 WYELCDLFGLYMIDEA-NI-----ETHGFYFSE----HLKHPTMEPSWAAAMMDRVIGMVERDK-------NHASIICWS 164 (761)
Q Consensus 102 ~~dlcDe~Gi~V~~e~-~~-----~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~mV~r~r-------NHPSIi~Ws 164 (761)
|+++|.|.||||+... |. +-.|+..|- .....+++|.|.+++.+.+.+++.+.+ |=-.|||-.
T Consensus 103 Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 103 FIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred HHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 9999999999999765 22 223444331 223446799999887666666666654 444699999
Q ss_pred CCCCCCCC-----Cc----HHHHHHHHHhhCCCCeEeccCCCCCCCCCceecCCCCchHHHHHHhhCCCCCCCeEeecc
Q 004315 165 LGNEAGHG-----PN----HSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEY 234 (761)
Q Consensus 165 lgNE~~~g-----~~----~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~~Ey 234 (761)
+-||.+.. .. ++.+++.+++..-+=|.....+ .. ..-+++..-.... -+.+.. ....+|+|.+||
T Consensus 183 IENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg-~~-~~~~v~~t~Ng~~--~~~f~~-~~~~~P~m~tE~ 256 (840)
T PLN03059 183 IENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQ-ED-APDPVIDTCNGFY--CENFKP-NKDYKPKMWTEA 256 (840)
T ss_pred ecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCC-CC-CCccceecCCCch--hhhccc-CCCCCCcEEecc
Confidence 99998742 22 4556666677666656554432 11 1112222111111 122222 233589999998
No 12
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=4.8e-10 Score=121.18 Aligned_cols=239 Identities=17% Similarity=0.169 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCCCC-----------C-------hhHHHHHHHhcCCEEEeeccccc-C--Ccc---cc
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSHYP-----------Q-------HPRWYELCDLFGLYMIDEANIET-H--GFY---FS 127 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~p-----------~-------~~~~~dlcDe~Gi~V~~e~~~~~-~--g~~---~~ 127 (761)
-.+.++.|+..|+.+|++.+|++.-- + ..+|++-|-+++|.|....=... | |.. .|
T Consensus 24 ~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipw 103 (587)
T COG3934 24 GNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPW 103 (587)
T ss_pred hhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeec
Confidence 36788999999999999999997221 1 13689999999999865432110 0 111 11
Q ss_pred cc---CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC----CCc-----HHHHHHHHHhhCCCCeEeccC
Q 004315 128 EH---LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH----GPN-----HSAAAGWIRGKDPSRLLHYEG 195 (761)
Q Consensus 128 ~~---~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~----g~~-----~~~~~~~ik~~DptRpv~~~~ 195 (761)
.. ......|+.++..+.+.+..+|+.+|-||+|..|.+.||+-. ..| ..+|+.+||.+||.++|....
T Consensus 104 ag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD 183 (587)
T COG3934 104 AGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGD 183 (587)
T ss_pred CCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCC
Confidence 11 112234888999999999999999999999999999999543 122 468999999999999998754
Q ss_pred CCC---------CCCCCceecCC-CC---c-h------HHHHHHhhCC-CCC-CCeEeeccccc--cCCCCccHHHHHHH
Q 004315 196 GGS---------RTPSTDIVCPM-YM---R-V------WDIVMIAKDP-TET-RPLILCEYSHA--MGNSNGNIHEYWEA 251 (761)
Q Consensus 196 ~~~---------~~~~~Di~~~~-Y~---~-~------~~~~~~~~~~-~~~-kP~i~~Eygh~--~gn~~g~~~~yw~~ 251 (761)
..+ -...+|.-++| |+ . + ...+.+++.. ..+ +|+++.|||.+ .|........-|-.
T Consensus 184 ~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~ 263 (587)
T COG3934 184 PASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIR 263 (587)
T ss_pred cCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhhh
Confidence 322 01245555543 32 1 0 0111122211 124 89999999964 23322222333544
Q ss_pred HHccCCceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCCCCcHHHHHHhhcce
Q 004315 252 IDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAI 323 (761)
Q Consensus 252 ~~~~p~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~~pi 323 (761)
+.-.-.--|++||++.|+.+...++.+ .| .|...+| ||+..|..+|-.+.++++..+.-
T Consensus 264 lal~~ggdGaLiwclsdf~~gsdd~ey----~w------~p~el~f---giIradgpek~~a~~~~~fsn~~ 322 (587)
T COG3934 264 LALDTGGDGALIWCLSDFHLGSDDSEY----TW------GPMELEF---GIIRADGPEKIDAMTLHIFSNNW 322 (587)
T ss_pred hHHhhcCCceEEEEecCCccCCCCCCC----cc------cccccee---eeecCCCchhhhHHHHHHhcccc
Confidence 433345568899999999864322211 11 2555566 89999999999999888766543
No 13
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.89 E-value=4.8e-08 Score=105.86 Aligned_cols=143 Identities=23% Similarity=0.244 Sum_probs=91.8
Q ss_pred EEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----CCCCCh-----------hHHHHHHHh
Q 004315 45 QLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------PRWYELCDL 108 (761)
Q Consensus 45 ~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~-----~h~p~~-----------~~~~dlcDe 108 (761)
.|+|||||++|-+.-.|.+ +++++.++..|+.||++|+|+|-+ .|-|.. ..|+++|.+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~------r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~ 74 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYF------RIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQE 74 (319)
T ss_dssp CEEETTEEE-EEEEEE-GG------GS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHH
T ss_pred CeEECCEEEEEEEeeeccc------cCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHH
Confidence 4899999999999999864 467999999999999999999999 233322 269999999
Q ss_pred cCCEEEeec-cccc-----CCccccc----cCCCCCCCHHHHHHHHHHHHHHHHHhC-----CCceEEEEeCCCCCCCCC
Q 004315 109 FGLYMIDEA-NIET-----HGFYFSE----HLKHPTMEPSWAAAMMDRVIGMVERDK-----NHASIICWSLGNEAGHGP 173 (761)
Q Consensus 109 ~Gi~V~~e~-~~~~-----~g~~~~~----~~~~~~~~~~~~~~~~~~~~~mV~r~r-----NHPSIi~WslgNE~~~g~ 173 (761)
.||+|+.-. |.-| .|+..|- .....+++|.|.+++.+-++.+....+ +--.|||-.+-||.+...
T Consensus 75 ~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~ 154 (319)
T PF01301_consen 75 NGLYVILRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYG 154 (319)
T ss_dssp TT-EEEEEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTS
T ss_pred cCcEEEecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCc
Confidence 999999765 2222 2332221 223446789998887766666555443 323599999999998544
Q ss_pred c----HHHHHHHHHhhCCCCeEec
Q 004315 174 N----HSAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 174 ~----~~~~~~~ik~~DptRpv~~ 193 (761)
. ++.+.+..++.=.+-++.+
T Consensus 155 ~~~~Y~~~l~~~~~~~g~~~~~~~ 178 (319)
T PF01301_consen 155 TDRAYMEALKDAYRDWGIDPVLLY 178 (319)
T ss_dssp S-HHHHHHHHHHHHHTT-SSSBEE
T ss_pred ccHhHHHHHHHHHHHhhCccceee
Confidence 3 3455555555433333333
No 14
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=3.7e-07 Score=106.09 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=94.6
Q ss_pred eCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc------CCCCC---------hhHHHHHH
Q 004315 42 APKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN------SHYPQ---------HPRWYELC 106 (761)
Q Consensus 42 ~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~------~h~p~---------~~~~~dlc 106 (761)
+...|.+.|+++++.|.++|++ .++++.+..||+.||++|+|+||+ .|-|. +..|++++
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~------~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~~l~~a 77 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPE------RWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEIFLERA 77 (673)
T ss_pred cccceeeCCceeEEeccccChH------HCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHHHHHHH
Confidence 4567899999999999998754 345699999999999999999999 23332 22479999
Q ss_pred HhcCCEEEeec-ccc-cCC-----cccc------------ccC-CCCCCCHHHHHHHHHHHHHHHHH-hCCCceEEEEeC
Q 004315 107 DLFGLYMIDEA-NIE-THG-----FYFS------------EHL-KHPTMEPSWAAAMMDRVIGMVER-DKNHASIICWSL 165 (761)
Q Consensus 107 De~Gi~V~~e~-~~~-~~g-----~~~~------------~~~-~~~~~~~~~~~~~~~~~~~mV~r-~rNHPSIi~Wsl 165 (761)
++.||+|+.-. |.. +.. +... +.. .+-...+-+++....-+..+.+| +.|||+|++|.+
T Consensus 78 ~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~ 157 (673)
T COG1874 78 YKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQN 157 (673)
T ss_pred HhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEc
Confidence 99999999877 521 111 1100 000 01123555555544445567788 999999999999
Q ss_pred CCCCCC-CCc----HHHHHHHHHhh
Q 004315 166 GNEAGH-GPN----HSAAAGWIRGK 185 (761)
Q Consensus 166 gNE~~~-g~~----~~~~~~~ik~~ 185 (761)
.||.+. ++. ......|+|+-
T Consensus 158 dneY~~~~~~~~~~~~~f~~wLk~~ 182 (673)
T COG1874 158 DNEYGGHPCYCDYCQAAFRLWLKKG 182 (673)
T ss_pred cCccCCccccccccHHHHHHHHHhC
Confidence 999876 433 22333466653
No 15
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.13 E-value=3.9e-05 Score=75.20 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEc--------CCCCCh--------------hHHHHHHHhcCCEEEeecccccCCccc
Q 004315 69 KTNIESCMVKDLVLMKQNNINAVRN--------SHYPQH--------------PRWYELCDLFGLYMIDEANIETHGFYF 126 (761)
Q Consensus 69 ~~~~~e~~~~dl~~mK~~g~N~vR~--------~h~p~~--------------~~~~dlcDe~Gi~V~~e~~~~~~g~~~ 126 (761)
...++++++++++.||++||++|=+ ..||.. +.++++||++||.|+..++... .+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~-~~-- 91 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP-DY-- 91 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc-hh--
Confidence 4578999999999999999999844 223321 2589999999999998775321 11
Q ss_pred cccCCCCCCCHHHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCCC-----cHHHHHHHHHhhCCCCeEecc
Q 004315 127 SEHLKHPTMEPSWAAAMMD-RVIGMVERDKNHASIICWSLGNEAGHGP-----NHSAAAGWIRGKDPSRLLHYE 194 (761)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~~~mV~r~rNHPSIi~WslgNE~~~g~-----~~~~~~~~ik~~DptRpv~~~ 194 (761)
+. ..+++|...... -+.++..++.+|||+-.|=+..|..... ..+.+..++|.+-|..||...
T Consensus 92 ---w~--~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 92 ---WD--QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred ---hh--ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 11 245666433323 3556778899999999999999986542 256788889999888888754
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.13 E-value=4e-05 Score=80.70 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCC---------------c-HHHHHHHHHhhCCCCeEeccC----
Q 004315 136 EPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP---------------N-HSAAAGWIRGKDPSRLLHYEG---- 195 (761)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~---------------~-~~~~~~~ik~~DptRpv~~~~---- 195 (761)
.++..+.+.+.+++++.|++.. |..|.+.||+.... + .....+++|+.||+-.+.++.
T Consensus 52 ~~~~~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~ 129 (254)
T smart00633 52 KETLLARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTE 129 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCc
Confidence 3455677888999999999865 88899999975321 1 456778999999975555431
Q ss_pred -CCC--------------CCCCCceecC--C----CCchHHHHHHhhC-CCCCCCeEeeccccccCCCCc----cHHHHH
Q 004315 196 -GGS--------------RTPSTDIVCP--M----YMRVWDIVMIAKD-PTETRPLILCEYSHAMGNSNG----NIHEYW 249 (761)
Q Consensus 196 -~~~--------------~~~~~Di~~~--~----Y~~~~~~~~~~~~-~~~~kP~i~~Eygh~~gn~~g----~~~~yw 249 (761)
.+. .....|.++. | ++....+...++. ...++|+.+||+......+.. .++++.
T Consensus 130 ~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l 209 (254)
T smart00633 130 EPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVF 209 (254)
T ss_pred CccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHH
Confidence 100 0112555552 2 2344555444432 123899999999865433211 245667
Q ss_pred HHHHccCCceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCCCCcHHH
Q 004315 250 EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHE 315 (761)
Q Consensus 250 ~~~~~~p~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~ 315 (761)
+.+.++|.+.|-++|.+.|... |. + + ..-||++.|.+|||+|+.
T Consensus 210 ~~~~~~p~v~gi~~Wg~~d~~~----------W~--------~-~---~~~~L~d~~~~~kpa~~~ 253 (254)
T smart00633 210 KACLAHPAVTGVTVWGVTDKYS----------WL--------D-G---GAPLLFDANYQPKPAYWA 253 (254)
T ss_pred HHHHcCCCeeEEEEeCCccCCc----------cc--------C-C---CCceeECCCCCCChhhhc
Confidence 7778899999999999887422 21 0 0 013899999999999864
No 17
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.03 E-value=4.2e-05 Score=81.98 Aligned_cols=176 Identities=18% Similarity=0.166 Sum_probs=93.6
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCCC-----------------------------
Q 004315 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ----------------------------- 98 (761)
Q Consensus 48 lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~----------------------------- 98 (761)
-+|+|++.-|-... ..-...+.+.++.-|+..|+-|+|.||+.-.|.
T Consensus 8 ~dG~Pff~lgdT~W----~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N 83 (289)
T PF13204_consen 8 ADGTPFFWLGDTAW----SLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN 83 (289)
T ss_dssp TTS-B--EEEEE-T----THHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT--
T ss_pred CCCCEEeehhHHHH----HHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC
Confidence 69999999996532 122345778888899999999999999932111
Q ss_pred h------hHHHHHHHhcCCEEEeecccccCCcccc-ccCCC--CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCC
Q 004315 99 H------PRWYELCDLFGLYMIDEANIETHGFYFS-EHLKH--PTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (761)
Q Consensus 99 ~------~~~~dlcDe~Gi~V~~e~~~~~~g~~~~-~~~~~--~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (761)
. ++.++.+.++||.+..-. .||.... +.+.. ..-. .+...+.++-+|+|++.-|.|| |+++||.
T Consensus 84 ~~YF~~~d~~i~~a~~~Gi~~~lv~---~wg~~~~~~~Wg~~~~~m~---~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~ 156 (289)
T PF13204_consen 84 PAYFDHLDRRIEKANELGIEAALVP---FWGCPYVPGTWGFGPNIMP---PENAERYGRYVVARYGAYPNVI-WILGGDY 156 (289)
T ss_dssp --HHHHHHHHHHHHHHTT-EEEEES---S-HHHHH-------TTSS----HHHHHHHHHHHHHHHTT-SSEE-EEEESSS
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEE---EECCccccccccccccCCC---HHHHHHHHHHHHHHHhcCCCCE-EEecCcc
Confidence 0 136889999999996432 1211110 00100 1112 3445566899999999999987 9999998
Q ss_pred C-CCC---cHHHHHHHHHhhCCCCeEeccCCCC--------CCCCCceecC---C--CC--chHHH--HHHhhCCCCCCC
Q 004315 170 G-HGP---NHSAAAGWIRGKDPSRLLHYEGGGS--------RTPSTDIVCP---M--YM--RVWDI--VMIAKDPTETRP 228 (761)
Q Consensus 170 ~-~g~---~~~~~~~~ik~~DptRpv~~~~~~~--------~~~~~Di~~~---~--Y~--~~~~~--~~~~~~~~~~kP 228 (761)
. ... ..++|++.||+.||..|++++..+. ..+-.|+.+. + +. ....+ ....+ ....||
T Consensus 157 ~~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~~~~~~~~~~~~~~~~~-~~p~KP 235 (289)
T PF13204_consen 157 FDTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNRYDQDNWYYLPEEFDYR-RKPVKP 235 (289)
T ss_dssp --TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S--TT--THHHH--HHHHT-SSS---
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCCcccchHHHHHhhhhhhh-hCCCCC
Confidence 2 222 2578999999999988998875432 2344666543 1 11 11222 11112 235999
Q ss_pred eEeeccc
Q 004315 229 LILCEYS 235 (761)
Q Consensus 229 ~i~~Eyg 235 (761)
+|..|.+
T Consensus 236 vin~Ep~ 242 (289)
T PF13204_consen 236 VINGEPC 242 (289)
T ss_dssp EEESS--
T ss_pred EEcCccc
Confidence 9999986
No 18
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.90 E-value=1.7e-05 Score=69.33 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=36.7
Q ss_pred HHHHhCCCceEEEEeCCCC-CCC-C--------C--------cHHHHHHHHHhhCCCCeEeccCCCC--------CCCCC
Q 004315 150 MVERDKNHASIICWSLGNE-AGH-G--------P--------NHSAAAGWIRGKDPSRLLHYEGGGS--------RTPST 203 (761)
Q Consensus 150 mV~r~rNHPSIi~WslgNE-~~~-g--------~--------~~~~~~~~ik~~DptRpv~~~~~~~--------~~~~~ 203 (761)
+|.++++||.|++|.|+|| ... + . -++++.+++|++||++||+....+. ....+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~~~~~~~~~~~~~~ 80 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGGDWEDLEQLQAENL 80 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S-TTHHHHS--TT-
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccCCHHHHHHhchhcC
Confidence 4789999999999999999 441 1 0 1568899999999999999754321 12456
Q ss_pred ceecCC
Q 004315 204 DIVCPM 209 (761)
Q Consensus 204 Di~~~~ 209 (761)
|+++.|
T Consensus 81 DvisfH 86 (88)
T PF12876_consen 81 DVISFH 86 (88)
T ss_dssp SSEEB-
T ss_pred CEEeee
Confidence 766654
No 19
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.0011 Score=76.08 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=99.0
Q ss_pred eEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----CCCCChh----------
Q 004315 36 IRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQHP---------- 100 (761)
Q Consensus 36 fR~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~-----~h~p~~~---------- 100 (761)
-..|..+++.|.+||+|+.+-+...|.. +.++|.+...|+.+|++|+|+|-| -|-|..-
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~------R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~Dl 90 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYP------RSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDL 90 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccc------cCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHH
Confidence 3456667899999999999999999854 468999999999999999999999 3544332
Q ss_pred -HHHHHHHhcCCEEEeecc-cccC-----Cccccc----cCCCCCCCHHHHHHHHHHHHHHHHH-----hCCCceEEEEe
Q 004315 101 -RWYELCDLFGLYMIDEAN-IETH-----GFYFSE----HLKHPTMEPSWAAAMMDRVIGMVER-----DKNHASIICWS 164 (761)
Q Consensus 101 -~~~dlcDe~Gi~V~~e~~-~~~~-----g~~~~~----~~~~~~~~~~~~~~~~~~~~~mV~r-----~rNHPSIi~Ws 164 (761)
.|+.+|.+.||||+..+. ..|. |+..|- .....++++.|...+..-++.+|.. ++|=--|||=.
T Consensus 91 vkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~Q 170 (649)
T KOG0496|consen 91 VKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQ 170 (649)
T ss_pred HHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 599999999999987663 3222 332111 1112356788877765555544442 45666699999
Q ss_pred CCCCCCCCCcHHHHHHHHHhh
Q 004315 165 LGNEAGHGPNHSAAAGWIRGK 185 (761)
Q Consensus 165 lgNE~~~g~~~~~~~~~ik~~ 185 (761)
+-||.+ ....++.+..|+.
T Consensus 171 IENEYG--~~~~~~~~~~k~y 189 (649)
T KOG0496|consen 171 IENEYG--NYLRALGAEGKSY 189 (649)
T ss_pred eechhh--HHHHHHHHHHHHh
Confidence 999976 3344444444443
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.58 E-value=0.00035 Score=75.73 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCcEEEc--CCCCCh------h---HHHHHHHhcCCEEEeecccccCCccccc-cCCCC-----CCCHHHH
Q 004315 78 KDLVLMKQNNINAVRN--SHYPQH------P---RWYELCDLFGLYMIDEANIETHGFYFSE-HLKHP-----TMEPSWA 140 (761)
Q Consensus 78 ~dl~~mK~~g~N~vR~--~h~p~~------~---~~~dlcDe~Gi~V~~e~~~~~~g~~~~~-~~~~~-----~~~~~~~ 140 (761)
.-+++||+.|+|+||+ +..|.. + .+...+-++||-|+.++-.. . ++..+ ....| .+..+..
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYS-D-~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYS-D-FWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SS-S-S--BTTB-B--TTCTSSSHHHHH
T ss_pred CHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeeccc-C-CCCCCCCCCCCccCCCCCHHHHH
Confidence 4589999999999998 566655 2 36677889999999888321 0 11110 11111 1345667
Q ss_pred HHHHHHHHHHHHHhCCCc-eEEEEeCCCCCCCC--------Cc-------HHHHHHHHHhhCCCCeEec--cCCCC----
Q 004315 141 AAMMDRVIGMVERDKNHA-SIICWSLGNEAGHG--------PN-------HSAAAGWIRGKDPSRLLHY--EGGGS---- 198 (761)
Q Consensus 141 ~~~~~~~~~mV~r~rNHP-SIi~WslgNE~~~g--------~~-------~~~~~~~ik~~DptRpv~~--~~~~~---- 198 (761)
+++.+..+.++..+++.- .+=|+.+|||...| .+ +++.+++||+.+|+=.|.. ++++.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~ 185 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLY 185 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHH
Confidence 777788888888776554 45688999998643 12 3456788999999765543 33321
Q ss_pred ---------CCCCCceecC-CCCc----hHHHHH----HhhCCCCCCCeEeeccccc
Q 004315 199 ---------RTPSTDIVCP-MYMR----VWDIVM----IAKDPTETRPLILCEYSHA 237 (761)
Q Consensus 199 ---------~~~~~Di~~~-~Y~~----~~~~~~----~~~~~~~~kP~i~~Eygh~ 237 (761)
.....|+++- .|+. .+.+.. ..+.. +||++++|.|..
T Consensus 186 ~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry--~K~V~V~Et~yp 240 (332)
T PF07745_consen 186 RWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRY--GKPVMVVETGYP 240 (332)
T ss_dssp HHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHH--T-EEEEEEE---
T ss_pred HHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHh--CCeeEEEecccc
Confidence 1235678874 3442 233322 22222 799999999854
No 21
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.01 Score=61.11 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=123.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC--CCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHH
Q 004315 65 PRVGKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (761)
Q Consensus 65 p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h--~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~ 142 (761)
+.-|..-+-+++..||+++|.... +||+.. .-.-+.++.++...||.|...+. |.++ ...+
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw--------------~tdd--~~~~ 116 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIW--------------PTDD--IHDA 116 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEe--------------eccc--hhhh
Confidence 345778899999999999999998 999944 22345789999999999998552 1112 1223
Q ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCCCCCc---------HHHHHHHHHhhCCCCeEeccCCC-------CCCCCCcee
Q 004315 143 MMDRVIGMVERDKNHASIICWSLGNEAGHGPN---------HSAAAGWIRGKDPSRLLHYEGGG-------SRTPSTDIV 206 (761)
Q Consensus 143 ~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~---------~~~~~~~ik~~DptRpv~~~~~~-------~~~~~~Di~ 206 (761)
..+.+...++.+..-+.|..-.+|||.-++.. .......+++.+-+-||+....+ ..+..+|++
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~l~~~SDfi 196 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPELCQASDFI 196 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChHHhhhhhhh
Confidence 33366777888899999999999999987643 44566778888888888764322 123456766
Q ss_pred cCC---CCch------------HHHHHHhhCCCCCCCeEeeccccc-----cCC---CCccHHHHHHHHHccCCcee--E
Q 004315 207 CPM---YMRV------------WDIVMIAKDPTETRPLILCEYSHA-----MGN---SNGNIHEYWEAIDSTFGLQG--G 261 (761)
Q Consensus 207 ~~~---Y~~~------------~~~~~~~~~~~~~kP~i~~Eygh~-----~gn---~~g~~~~yw~~~~~~p~~~G--g 261 (761)
.-+ |.+. +.++..-.....+|+++++|=|.- .|. +..+.+.+|+.+...=+-.| -
T Consensus 197 a~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~ 276 (305)
T COG5309 197 AANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDV 276 (305)
T ss_pred hcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccE
Confidence 532 5431 222222223343599999999842 121 34577889888766332233 3
Q ss_pred eeeecccC
Q 004315 262 FIWDWVDQ 269 (761)
Q Consensus 262 ~vW~~~D~ 269 (761)
|+..-+|+
T Consensus 277 fvfeAFdd 284 (305)
T COG5309 277 FVFEAFDD 284 (305)
T ss_pred EEeeeccc
Confidence 45554443
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.11 E-value=0.0045 Score=67.48 Aligned_cols=231 Identities=17% Similarity=0.100 Sum_probs=130.0
Q ss_pred CCCCCHHHHHHH--HHHHHHcCCcEEEcC--C-----CC--------ChhHHHHHHHhcCCEEEeecccccCC-cccccc
Q 004315 68 GKTNIESCMVKD--LVLMKQNNINAVRNS--H-----YP--------QHPRWYELCDLFGLYMIDEANIETHG-FYFSEH 129 (761)
Q Consensus 68 g~~~~~e~~~~d--l~~mK~~g~N~vR~~--h-----~p--------~~~~~~dlcDe~Gi~V~~e~~~~~~g-~~~~~~ 129 (761)
|.+++...+..+ .+.+-...+|.|=.. . .| ....+++.|.+.||.|--=..+ .|. ...|-.
T Consensus 13 G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~Lv-W~~~~P~w~~ 91 (320)
T PF00331_consen 13 GAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLV-WHSQTPDWVF 91 (320)
T ss_dssp EEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEE-ESSSS-HHHH
T ss_pred EEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEE-Ecccccceee
Confidence 444444434332 444445677777552 1 11 2247999999999988532211 111 010100
Q ss_pred CCCCCCC---HHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCC------------------cHHHHHHHHHhhCCC
Q 004315 130 LKHPTME---PSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP------------------NHSAAAGWIRGKDPS 188 (761)
Q Consensus 130 ~~~~~~~---~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~------------------~~~~~~~~ik~~Dpt 188 (761)
.....+. +...+.+.+++.+++.|+++...|..|.+-||+-... ....+.+++|+.||+
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~ 171 (320)
T PF00331_consen 92 NLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPN 171 (320)
T ss_dssp TSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred eccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCC
Confidence 0000111 2377888889999999999999999999999995421 145678899999996
Q ss_pred CeEeccCCCC------------------CCCCCceecC--C----CCchHHHHHHhhC-CCCCCCeEeeccccccCCCC-
Q 004315 189 RLLHYEGGGS------------------RTPSTDIVCP--M----YMRVWDIVMIAKD-PTETRPLILCEYSHAMGNSN- 242 (761)
Q Consensus 189 Rpv~~~~~~~------------------~~~~~Di~~~--~----Y~~~~~~~~~~~~-~~~~kP~i~~Eygh~~gn~~- 242 (761)
-...++.-+. .....|-+|. | +. .+.+...++. ...+.|+.+||+--......
T Consensus 172 a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 172 AKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp SEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred cEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCC-HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 5444432110 0111454442 1 22 3444333321 12379999999963222211
Q ss_pred ---------ccHHHHHHHHHccC--CceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccCCccCCCCCCCC
Q 004315 243 ---------GNIHEYWEAIDSTF--GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHP 311 (761)
Q Consensus 243 ---------g~~~~yw~~~~~~p--~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pkp 311 (761)
..++++.+.+.++| .+.|-.+|.+.|........ + -..-+|++.+.+|||
T Consensus 251 ~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~-----------~--------~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 251 DAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDT-----------P--------PDRPLLFDEDYQPKP 311 (320)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGH-----------S--------EG--SSB-TTSBB-H
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCC-----------C--------CCCCeeECCCcCCCH
Confidence 12345667778899 99999999999854322110 0 011378899999999
Q ss_pred cHHHHHHh
Q 004315 312 ALHEVKYV 319 (761)
Q Consensus 312 ~~~~~k~~ 319 (761)
+|+.++++
T Consensus 312 a~~~~~~a 319 (320)
T PF00331_consen 312 AYDAIVDA 319 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.077 Score=55.44 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=89.0
Q ss_pred HHHH-HHHHHHcCCcEEEc--CCCCChh----------------HHHHHHHhcCCEEEeecccccCCccccccCC-CC--
Q 004315 76 MVKD-LVLMKQNNINAVRN--SHYPQHP----------------RWYELCDLFGLYMIDEANIETHGFYFSEHLK-HP-- 133 (761)
Q Consensus 76 ~~~d-l~~mK~~g~N~vR~--~h~p~~~----------------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~-~~-- 133 (761)
.++| +..+|++|+|.||+ +.-|.+. ++-..|-.+||.|+.++-.. .|+..+..+ .|
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYS--DfwaDPakQ~kPka 141 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYS--DFWADPAKQKKPKA 141 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccch--hhccChhhcCCcHH
Confidence 3445 78999999999988 4444332 35677888999999987321 111111111 11
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhCCCce-EEEEeCCCCCCCC--------CcH-------HHHHHHHHhhCCCCeEecc
Q 004315 134 ---TMEPSWAAAMMDRVIGMVERDKNHAS-IICWSLGNEAGHG--------PNH-------SAAAGWIRGKDPSRLLHYE 194 (761)
Q Consensus 134 ---~~~~~~~~~~~~~~~~mV~r~rNHPS-Ii~WslgNE~~~g--------~~~-------~~~~~~ik~~DptRpv~~~ 194 (761)
.+..+.+++.-+..+..+...++--- +=|-.+|||...| .++ ++.+.++|+.||+-.|..+
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lH 221 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALH 221 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEE
Confidence 11233344445555665655554444 3455899999543 243 4455678999998877542
Q ss_pred --CCC-------------CCCCCCceecC-CCCc----hHHH----HHHhhCCCCCCCeEeecccc
Q 004315 195 --GGG-------------SRTPSTDIVCP-MYMR----VWDI----VMIAKDPTETRPLILCEYSH 236 (761)
Q Consensus 195 --~~~-------------~~~~~~Di~~~-~Y~~----~~~~----~~~~~~~~~~kP~i~~Eygh 236 (761)
.+. ..+-..|+++- +|+. ...+ .+.+... .|-+|++|-+.
T Consensus 222 la~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY--~K~VmV~Etay 285 (403)
T COG3867 222 LAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRY--HKDVMVVETAY 285 (403)
T ss_pred ecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHh--cCeEEEEEecc
Confidence 221 01234577764 4442 2222 2333322 78999999753
No 24
>TIGR03356 BGL beta-galactosidase.
Probab=95.58 E-value=0.043 Score=62.26 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-----hh-------HHHHHHHhcCCEEEeecccccCCccccccC--CC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----HP-------RWYELCDLFGLYMIDEANIETHGFYFSEHL--KH 132 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~--~~ 132 (761)
...++++||++||++|+|++|+|. .|. ++ .+++.|-++||-++..+- .|...... ..
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~----Hfd~P~~l~~~g 127 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY----HWDLPQALEDRG 127 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec----cCCccHHHHhcC
Confidence 578999999999999999999953 333 11 478999999999998772 12210000 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 133 PTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 133 ~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
--.+++..+.+++.++.+++++++ .|=.|..-||+.
T Consensus 128 Gw~~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~ 163 (427)
T TIGR03356 128 GWLNRDTAEWFAEYAAVVAERLGD--RVKHWITLNEPW 163 (427)
T ss_pred CCCChHHHHHHHHHHHHHHHHhCC--cCCEEEEecCcc
Confidence 012577788899999999999999 477899999985
No 25
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=95.45 E-value=0.12 Score=59.71 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHH-HcCCcEEEcCCCCCh---------------------hHHHHHHHhcCCEEEeecccccCC------
Q 004315 72 IESCMVKDLVLMK-QNNINAVRNSHYPQH---------------------PRWYELCDLFGLYMIDEANIETHG------ 123 (761)
Q Consensus 72 ~~e~~~~dl~~mK-~~g~N~vR~~h~p~~---------------------~~~~dlcDe~Gi~V~~e~~~~~~g------ 123 (761)
.++.++..|+.++ +.|+..||++.--.+ +.++|..-+.||..+.|+.+.--+
T Consensus 37 l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~ 116 (486)
T PF01229_consen 37 LRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQ 116 (486)
T ss_dssp GBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--
T ss_pred hhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCC
Confidence 4567777777776 999999999643211 257999999999999988431101
Q ss_pred --ccccccCCCCCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEeCCCCCCCCC----c--------HHHHHHHHHhhCCC
Q 004315 124 --FYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGP----N--------HSAAAGWIRGKDPS 188 (761)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r-NHPSIi~WslgNE~~~g~----~--------~~~~~~~ik~~Dpt 188 (761)
|...+....|.+...|.+-+..-++..+.||. +.=+--.|.+-||+.... . .+..++.||+.||+
T Consensus 117 ~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~ 196 (486)
T PF01229_consen 117 TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPE 196 (486)
T ss_dssp EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 10001111244557787776666777777763 222233678999986421 1 35677889999998
Q ss_pred CeEecc---CCC------------CCCCCCceecCC-CCc-------------hHH-------H----HHHhhCCCCCCC
Q 004315 189 RLLHYE---GGG------------SRTPSTDIVCPM-YMR-------------VWD-------I----VMIAKDPTETRP 228 (761)
Q Consensus 189 Rpv~~~---~~~------------~~~~~~Di~~~~-Y~~-------------~~~-------~----~~~~~~~~~~kP 228 (761)
=.|--. ... ......|++|.| |+. ... + ..+.+...+..|
T Consensus 197 ~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 276 (486)
T PF01229_consen 197 LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNLP 276 (486)
T ss_dssp SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--
T ss_pred CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCc
Confidence 665421 110 012346888764 432 111 1 112223445789
Q ss_pred eEeeccccccCCCCc----cH-HHH-HH-HHHccC-CceeEeeeecccCCceeecCCCceEeeecCccCCCCCCcccccC
Q 004315 229 LILCEYSHAMGNSNG----NI-HEY-WE-AIDSTF-GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLN 300 (761)
Q Consensus 229 ~i~~Eygh~~gn~~g----~~-~~y-w~-~~~~~p-~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~ 300 (761)
+.++||+.+..+... .+ ..| .+ .++... .+.+-..|.+.|-= .+.+. ..+|--+. -
T Consensus 277 ~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~F----ee~~~---------~~~pf~gg---f 340 (486)
T PF01229_consen 277 LYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRF----EENGT---------PRKPFHGG---F 340 (486)
T ss_dssp EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS-------TTSS----------SSSSSS----S
T ss_pred eeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhh----hccCC---------CCCceecc---h
Confidence 999999865443211 11 122 12 344433 34555677777621 00110 01222233 3
Q ss_pred CccCCCCCCCCcHHHHH
Q 004315 301 GLLWPDRTPHPALHEVK 317 (761)
Q Consensus 301 Glv~~dr~pkp~~~~~k 317 (761)
||++.++-+||+|++++
T Consensus 341 GLlt~~gI~KPa~~A~~ 357 (486)
T PF01229_consen 341 GLLTKLGIPKPAYYAFQ 357 (486)
T ss_dssp -SEECCCEE-HHHHHHH
T ss_pred hhhhccCCCchHHHHHH
Confidence 99999999999999875
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.1 Score=58.92 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCcEEEc-----C--CCC-Chh------------HHHHHHHhcCCEEEeecccccCCcc-------ccc
Q 004315 76 MVKDLVLMKQNNINAVRN-----S--HYP-QHP------------RWYELCDLFGLYMIDEANIETHGFY-------FSE 128 (761)
Q Consensus 76 ~~~dl~~mK~~g~N~vR~-----~--h~p-~~~------------~~~dlcDe~Gi~V~~e~~~~~~g~~-------~~~ 128 (761)
.+.++..||++|+|+||+ + +.. ..| +..+.|.++||+|+.+. |++. ...
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~----H~~~~~~~~~~~s~ 150 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL----HGYPGGNNGHEHSG 150 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe----cccCCCCCCcCccc
Confidence 388999999999999999 1 221 111 34778899999999985 3322 000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC---CC----cHHHHHHHH-HhhCCCCeE
Q 004315 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH---GP----NHSAAAGWI-RGKDPSRLL 191 (761)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~---g~----~~~~~~~~i-k~~DptRpv 191 (761)
....-....+-.+.+.+-.+.+..|+++-+.||+..+-||+.. .. ...+..+.+ +++....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~~~ 221 (407)
T COG2730 151 YTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNAPH 221 (407)
T ss_pred ccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcCce
Confidence 0000011223345667778999999999999999999999973 11 134566666 577777755
No 27
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=94.25 E-value=0.17 Score=58.14 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCCh-----h-------HHHHHHHhcCCEEEeecccccCCccccccC--CC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQH-----P-------RWYELCDLFGLYMIDEANIETHGFYFSEHL--KH 132 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~~-----~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~--~~ 132 (761)
...++++||++||++|+|+.|+|. .|.. + ++++.|-++||-.+..+- | |...... ..
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~G 127 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH---H-FDTPEALHSNG 127 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec---C-CCCcHHHHHcC
Confidence 578899999999999999999963 4431 1 478999999998887552 1 1100000 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 133 PTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 133 ~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
--.+++..+.|.+.++.+++++.+ |=.|...||+.
T Consensus 128 GW~n~~~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~ 162 (469)
T PRK13511 128 DWLNRENIDHFVRYAEFCFEEFPE---VKYWTTFNEIG 162 (469)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCC---CCEEEEccchh
Confidence 012567788899999999999998 89999999985
No 28
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=93.98 E-value=0.13 Score=59.10 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-------hh------HHHHHHHhcCCEEEeecccccCCcccc----cc
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-------HP------RWYELCDLFGLYMIDEANIETHGFYFS----EH 129 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-------~~------~~~dlcDe~Gi~V~~e~~~~~~g~~~~----~~ 129 (761)
...++++||++||++|+|+.|+|. .|. .+ .+++.|-++||-.+..+- | |... ..
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~---H-~dlP~~L~~~ 142 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS---H-FEMPLHLVQQ 142 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee---C-CCCCHHHHHh
Confidence 567899999999999999999953 332 11 478999999999887662 1 1100 00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
+.. -.+++..+.|.+.++.+++++++. |=.|...||+.
T Consensus 143 yGG-W~n~~~~~~F~~Ya~~~f~~fgdr--Vk~WiT~NEp~ 180 (477)
T PRK15014 143 YGS-WTNRKVVDFFVRFAEVVFERYKHK--VKYWMTFNEIN 180 (477)
T ss_pred cCC-CCChHHHHHHHHHHHHHHHHhcCc--CCEEEEecCcc
Confidence 000 125678889999999999999988 77999999985
No 29
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=93.85 E-value=0.22 Score=57.09 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-----hh-------HHHHHHHhcCCEEEeecccccCCccccccC--CC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----HP-------RWYELCDLFGLYMIDEANIETHGFYFSEHL--KH 132 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~--~~ 132 (761)
...++++||++||++|+|+.|+|. .|. .+ ++++.|-+.||-.+..+- | |...... ..
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~G 126 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH---H-FDTPEALHSNG 126 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc---C-CCCcHHHHHcC
Confidence 578899999999999999999953 443 11 477899999999887652 1 1100000 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 133 PTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 133 ~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
--.+++..+.|.+.++.+++++. . |=.|...||+.
T Consensus 127 GW~n~~~v~~F~~YA~~~f~~fg-d--Vk~WiT~NEP~ 161 (467)
T TIGR01233 127 DFLNRENIEHFIDYAAFCFEEFP-E--VNYWTTFNEIG 161 (467)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhC-C--CCEEEEecchh
Confidence 01257788889999999999998 3 88999999985
No 30
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.51 Score=52.40 Aligned_cols=97 Identities=29% Similarity=0.450 Sum_probs=66.6
Q ss_pred CHHHHHHH-HHHHHHcCCcEEEc------CCC-------CCh--------------------hHHHHHHHhcCCEEEeec
Q 004315 72 IESCMVKD-LVLMKQNNINAVRN------SHY-------PQH--------------------PRWYELCDLFGLYMIDEA 117 (761)
Q Consensus 72 ~~e~~~~d-l~~mK~~g~N~vR~------~h~-------p~~--------------------~~~~dlcDe~Gi~V~~e~ 117 (761)
+.+-+++| |.++|++.+-.||. +.| |-. .+|+|+|...|.-++.-.
T Consensus 46 d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~av 125 (501)
T COG3534 46 DERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAV 125 (501)
T ss_pred chhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEE
Confidence 45667888 68899999999998 111 111 159999999998888777
Q ss_pred ccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCce------------------EEEEeCCCCCC----CCCc-
Q 004315 118 NIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHAS------------------IICWSLGNEAG----HGPN- 174 (761)
Q Consensus 118 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPS------------------Ii~WslgNE~~----~g~~- 174 (761)
++++.|. +.++++|+ |-|||. |=+|+||||+. +|..
T Consensus 126 N~Gsrgv--------------------d~ar~~vE-Y~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~ 184 (501)
T COG3534 126 NLGSRGV--------------------DEARNWVE-YCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKT 184 (501)
T ss_pred ecCCccH--------------------HHHHHHHH-HccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccccc
Confidence 7655432 33344444 556664 88999999993 2322
Q ss_pred -------HHHHHHHHHhhCCCC
Q 004315 175 -------HSAAAGWIRGKDPSR 189 (761)
Q Consensus 175 -------~~~~~~~ik~~DptR 189 (761)
.++..++.|-.|||-
T Consensus 185 a~EY~~~A~e~~k~~k~~d~t~ 206 (501)
T COG3534 185 APEYGRLANEYRKYMKYFDPTI 206 (501)
T ss_pred CHHHHHHHHHHHHHHhhcCccc
Confidence 345667888889864
No 31
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.63 E-value=0.45 Score=53.66 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CC-------Chh------HHHHHHHhcCCEEEeecccccCCcccc----cc
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YP-------QHP------RWYELCDLFGLYMIDEANIETHGFYFS----EH 129 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p-------~~~------~~~dlcDe~Gi~V~~e~~~~~~g~~~~----~~ 129 (761)
...++++||++||+||+|+.|+|. .| +.. +++|.|-++||-.+..+. | |... ..
T Consensus 57 ~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~---H-fd~P~~L~~~ 132 (460)
T COG2723 57 FYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY---H-FDLPLWLQKP 132 (460)
T ss_pred hhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec---c-cCCcHHHhhc
Confidence 368899999999999999999963 33 211 478999999999987652 1 2100 00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
+.. -.+.+-.+.+.+.++.+.+|+.+- |=.|...||+.
T Consensus 133 ygG-W~nR~~i~~F~~ya~~vf~~f~dk--Vk~W~TFNE~n 170 (460)
T COG2723 133 YGG-WENRETVDAFARYAATVFERFGDK--VKYWFTFNEPN 170 (460)
T ss_pred cCC-ccCHHHHHHHHHHHHHHHHHhcCc--ceEEEEecchh
Confidence 000 124556778888888899998864 67899999985
No 32
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=92.41 E-value=5.9 Score=39.94 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=77.5
Q ss_pred CCceEEEeeCCeEEEEccCcEEEEEEcCcccEEEEEECCEeeeccCcccceeecCCcCCCCCCCChhhHHHHHcCcccee
Q 004315 439 DAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLV 518 (761)
Q Consensus 439 ~~~~~~~~~~~~~~v~~~~~~~~~Fdk~~G~l~s~~~~g~~ll~~g~~~n~wRaptDND~g~~~~~~~~~W~~~g~~~~~ 518 (761)
...+++..++..+.+. ++-++++|+|-.|.+++++|+|.+-|..-. ...+++| .+.-.|...|.....
T Consensus 6 ~~~V~L~~~~~~Vvld-NGiVqVtls~p~G~VtgIkYnGi~NLle~~-------n~e~nrG----YwD~~W~~~G~~~~~ 73 (203)
T PF06045_consen 6 SSGVTLTVQGRQVVLD-NGIVQVTLSKPGGIVTGIKYNGIDNLLEVA-------NKENNRG----YWDLVWNEPGSKGKF 73 (203)
T ss_pred CCCeEEEEcCCEEEEE-CCEEEEEEcCCCceEEEEEECCEehhhccc-------CcccCCc----eEEEecccCCccccc
Confidence 3456777777776664 567999999999999999999996554310 1122232 122346655544311
Q ss_pred --eEEEEEEEEEeCCceEEEEEEEecCCccccchhhhhhhcceeEEEEEEEEEe-cCCeEEEEEEEeeCCCCCCC--cce
Q 004315 519 --FLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIY-GSGNVIVECNFKPNTSDLPP--LPR 593 (761)
Q Consensus 519 --~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~-~~G~i~v~~~~~~~~~~~p~--lpR 593 (761)
..-.++++...++..|.|+....-.|..+ .....+.++..|.+- ++--+-.-.-++-. .++|. |..
T Consensus 74 ~~~~gt~f~Vi~~te~qVevSF~r~w~~s~~--------~~~~plnIDkryVm~rG~SGfY~YAI~e~~-~~~Pa~~l~q 144 (203)
T PF06045_consen 74 DRIKGTEFSVIEQTEEQVEVSFSRTWDPSLD--------GKSVPLNIDKRYVMLRGSSGFYSYAIFEHP-AGWPAFDLGQ 144 (203)
T ss_pred cccCCcEEEEEEcCCCeEEEEEEcccCcCCC--------CCcceeEeeEEEEEecCCceEEEEEEEecC-CCCCCcccce
Confidence 12345666666667777777643222210 112345566666663 22223333334332 44553 444
Q ss_pred eEEEEEecC
Q 004315 594 VGVEFHLEQ 602 (761)
Q Consensus 594 iG~~~~lp~ 602 (761)
+=+-|.|.+
T Consensus 145 ~R~vfKl~~ 153 (203)
T PF06045_consen 145 TRIVFKLNK 153 (203)
T ss_pred eEEEEECCc
Confidence 444455544
No 33
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=91.58 E-value=0.58 Score=53.76 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC------hh-------HHHHHHHhcCCEEEeecccccCCcccc--ccCC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ------HP-------RWYELCDLFGLYMIDEANIETHGFYFS--EHLK 131 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~------~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~--~~~~ 131 (761)
...++++|+++||++|+|+.|+|. .|. .+ .+++.|-++||-++..+.- +....+ ..+.
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H--~~~P~~l~~~~G 146 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH--FDVPMHLVTEYG 146 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC--CCCCHHHHHhcC
Confidence 578899999999999999999952 332 12 4789999999998876531 000000 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
. -.+++..+.|.+.++.+++++.++- =.|...||+.
T Consensus 147 G-W~~~~~~~~F~~ya~~~~~~fgd~V--k~WiTfNEPn 182 (474)
T PRK09852 147 S-WRNRKMVEFFSRYARTCFEAFDGLV--KYWLTFNEIN 182 (474)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhcCcC--CeEEeecchh
Confidence 0 1256778889999999999998864 5799999974
No 34
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=91.21 E-value=25 Score=38.00 Aligned_cols=205 Identities=16% Similarity=0.137 Sum_probs=112.0
Q ss_pred hhHHHHHHHhcCCEEEeecccccCC-ccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC------
Q 004315 99 HPRWYELCDLFGLYMIDEANIETHG-FYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH------ 171 (761)
Q Consensus 99 ~~~~~dlcDe~Gi~V~~e~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~------ 171 (761)
.+..++.|.++||-+=- .++-.|. ...|-. .+....+...+.+.+.+...+.|||+. |+.|.+-||+-.
T Consensus 84 AD~ia~FAr~h~m~lhG-HtLvW~~q~P~W~~-~~e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd~g~~R 159 (345)
T COG3693 84 ADAIANFARKHNMPLHG-HTLVWHSQVPDWLF-GDELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNEAVDDQGSLR 159 (345)
T ss_pred hHHHHHHHHHcCCeecc-ceeeecccCCchhh-ccccChHHHHHHHHHHHHHHHHhccCc--eeEEEecccccCCCchhh
Confidence 45689999999986521 1111111 000100 011234667788888899999999997 999999999842
Q ss_pred ---------CCc-HHHHHHHHHhhCCC-CeEeccC--CCC----------------CCCCCceec------CCCCchHHH
Q 004315 172 ---------GPN-HSAAAGWIRGKDPS-RLLHYEG--GGS----------------RTPSTDIVC------PMYMRVWDI 216 (761)
Q Consensus 172 ---------g~~-~~~~~~~ik~~Dpt-Rpv~~~~--~~~----------------~~~~~Di~~------~~Y~~~~~~ 216 (761)
|++ +......+|+.||. +++.-.- .+. ...-.|-++ ..++..+.+
T Consensus 160 ~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~ 239 (345)
T COG3693 160 RSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKM 239 (345)
T ss_pred hhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHH
Confidence 111 45567788999996 5554211 100 011134333 124444443
Q ss_pred HH-HhhCCCCCCCeEeecccccc-CCCCccHHHH----------HHHHHccCC-ceeEeeeecccCCceeecCCCceEee
Q 004315 217 VM-IAKDPTETRPLILCEYSHAM-GNSNGNIHEY----------WEAIDSTFG-LQGGFIWDWVDQGLLRELADGTKHWA 283 (761)
Q Consensus 217 ~~-~~~~~~~~kP~i~~Eygh~~-gn~~g~~~~y----------w~~~~~~p~-~~Gg~vW~~~D~~~~~~~~~g~~~~~ 283 (761)
.. +.+....+-|+++||.=-+. ++-.+.-+.+ +......+. .-+-.+|-+.|.-......+ +.
T Consensus 240 ~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~----~~ 315 (345)
T COG3693 240 RAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRD----PR 315 (345)
T ss_pred HHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCc----cC
Confidence 22 22222237899999985322 2322222222 222334454 66777898888644332111 11
Q ss_pred ecCccCCCCCCcccccCCccCCCCCCCCcHHHHHHhhcc
Q 004315 284 YGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (761)
Q Consensus 284 yggdf~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~~p 322 (761)
|+| ..| =++|.+.+|||.|++++.+-+|
T Consensus 316 ~~~---~rP--------l~~D~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 316 RDG---LRP--------LLFDDNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred cCC---CCC--------cccCCCCCcchHHHHHHHHhcC
Confidence 222 112 2457778999999999865544
No 35
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=91.12 E-value=0.83 Score=52.59 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC------hh-------HHHHHHHhcCCEEEeecccccCCccccc----c
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ------HP-------RWYELCDLFGLYMIDEANIETHGFYFSE----H 129 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~------~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~----~ 129 (761)
...++++||++||++|+|+.|+|. .|. .+ ++++.|-++||-.+..+- | |.... .
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~---H-~dlP~~L~~~ 140 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS---H-FEMPYHLVTE 140 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---C-CCCCHHHHHh
Confidence 578999999999999999999963 342 11 478999999998876552 1 11000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
+.. -.+++..+.|.+.++.+++++.+. |=.|...||+.
T Consensus 141 yGG-W~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEp~ 178 (476)
T PRK09589 141 YGG-WRNRKLIDFFVRFAEVVFTRYKDK--VKYWMTFNEIN 178 (476)
T ss_pred cCC-cCChHHHHHHHHHHHHHHHHhcCC--CCEEEEecchh
Confidence 000 124567788888899999998875 56899999975
No 36
>PLN02814 beta-glucosidase
Probab=91.09 E-value=0.81 Score=52.98 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-----hh-------HHHHHHHhcCCEEEeecccccCCccccc----cC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----HP-------RWYELCDLFGLYMIDEANIETHGFYFSE----HL 130 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~----~~ 130 (761)
...++++||++||++|+|+-|+|. .|. .+ ++.|.|-++||-.+..+- | |.... .+
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~---H-~dlP~~L~~~y 150 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY---H-YDLPQSLEDEY 150 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec---C-CCCCHHHHHhc
Confidence 578999999999999999999963 343 11 478999999998876552 1 11000 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
.. -.+++..+.|.+.++.+++++.+. |=.|...||+.
T Consensus 151 GG-W~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEP~ 187 (504)
T PLN02814 151 GG-WINRKIIEDFTAFADVCFREFGED--VKLWTTINEAT 187 (504)
T ss_pred CC-cCChhHHHHHHHHHHHHHHHhCCc--CCEEEeccccc
Confidence 00 124667788888899999998875 56899999985
No 37
>PLN02849 beta-glucosidase
Probab=91.09 E-value=0.73 Score=53.34 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-----hh-------HHHHHHHhcCCEEEeecccccCCccccc----cC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----HP-------RWYELCDLFGLYMIDEANIETHGFYFSE----HL 130 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~----~~ 130 (761)
...++++||++||++|+|+-|+|. .|. ++ ++++.|-+.||-.+..+- | |.... .+
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~y 152 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF---H-YDHPQYLEDDY 152 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec---C-CCCcHHHHHhc
Confidence 578999999999999999999963 443 12 478999999998887552 1 11000 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
.. -.+++..+.|.+.++.+++++.+. |=.|..-||+.
T Consensus 153 GG-W~nr~~v~~F~~YA~~~f~~fgDr--Vk~WiT~NEP~ 189 (503)
T PLN02849 153 GG-WINRRIIKDFTAYADVCFREFGNH--VKFWTTINEAN 189 (503)
T ss_pred CC-cCCchHHHHHHHHHHHHHHHhcCc--CCEEEEecchh
Confidence 00 124567788888899999998875 56899999985
No 38
>PLN02998 beta-glucosidase
Probab=90.84 E-value=0.69 Score=53.45 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-----hh-------HHHHHHHhcCCEEEeecccccCCccccc----cC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----HP-------RWYELCDLFGLYMIDEANIETHGFYFSE----HL 130 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~----~~ 130 (761)
...++++||++||++|+|+-|+|. .|. ++ ++++.|-++||-.+..+- | |.... .+
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~---H-~dlP~~L~~~y 155 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH---H-FDLPQALEDEY 155 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec---C-CCCCHHHHHhh
Confidence 578999999999999999999963 343 12 478999999998776552 1 11000 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
+. --+++..+.|.+.++.+++++.+. |=.|...||+.
T Consensus 156 GG-W~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 192 (497)
T PLN02998 156 GG-WLSQEIVRDFTAYADTCFKEFGDR--VSHWTTINEVN 192 (497)
T ss_pred CC-cCCchHHHHHHHHHHHHHHHhcCc--CCEEEEccCcc
Confidence 00 124567788888899999998875 56899999985
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=89.19 E-value=1.4 Score=50.72 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCC-------hh------HHHHHHHhcCCEEEeecccccCCccccc----c
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-------HP------RWYELCDLFGLYMIDEANIETHGFYFSE----H 129 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-------~~------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~----~ 129 (761)
...++++||++||++|+|+.|+|. .|. .+ ++++.|-+.||-.+..+- | |.... .
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~---H-~dlP~~L~~~ 146 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT---H-FDCPMHLIEE 146 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---c-cCCCHHHHhh
Confidence 578999999999999999999953 332 11 478999999998876552 1 11000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
+.. -.+++..+.|.+.++.+++++.+. |=.|...||+.
T Consensus 147 ~GG-W~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 184 (478)
T PRK09593 147 YGG-WRNRKMVGFYERLCRTLFTRYKGL--VKYWLTFNEIN 184 (478)
T ss_pred cCC-CCChHHHHHHHHHHHHHHHHhcCc--CCEEEeecchh
Confidence 000 124567788888899999998875 46899999975
No 40
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=87.59 E-value=1 Score=51.66 Aligned_cols=92 Identities=20% Similarity=0.124 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCCh------h-------HHHHHHHhcCCEEEeecccccCCccccc---cC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQH------P-------RWYELCDLFGLYMIDEANIETHGFYFSE---HL 130 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~~------~-------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~---~~ 130 (761)
...++++||++||++|+|+.|+|. .|.. + ++++.|-+.||-.+..+- | |.... ..
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~---H-~~~P~~l~~~ 131 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY---H-FDLPLWLEDY 131 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE---S-S--BHHHHHH
T ss_pred chhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee---e-cccccceeec
Confidence 478999999999999999999963 3442 1 478999999999987662 1 11000 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
+ --.+++..+.+.+.++.+++++.+. |=.|...||+.
T Consensus 132 g-gw~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~T~NEp~ 168 (455)
T PF00232_consen 132 G-GWLNRETVDWFARYAEFVFERFGDR--VKYWITFNEPN 168 (455)
T ss_dssp T-GGGSTHHHHHHHHHHHHHHHHHTTT--BSEEEEEETHH
T ss_pred c-cccCHHHHHHHHHHHHHHHHHhCCC--cceEEeccccc
Confidence 0 0124667888889999999999976 66799999984
No 41
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=87.54 E-value=0.41 Score=49.42 Aligned_cols=96 Identities=15% Similarity=-0.031 Sum_probs=75.7
Q ss_pred CCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCC-----------CCCCC-CCHHHH---------HHHHH
Q 004315 23 SGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHP-----------RVGKT-NIESCM---------VKDLV 81 (761)
Q Consensus 23 ~g~~~d~~~~~~GfR~i~~~~~~f~lNGk~v~lrGvn~h~~~p-----------~~g~~-~~~e~~---------~~dl~ 81 (761)
++...|-+....+.|+|.+-...+..+|+|+.||.+|-|++.- ..|+- +.++.. ..|..
T Consensus 80 d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~g~~~~~dn~ 159 (297)
T KOG2024|consen 80 DWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFFGPLPAIDNN 159 (297)
T ss_pred CCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhccccccccCc
Confidence 4567788899999999999999999999999999999998632 11111 111111 23555
Q ss_pred HHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecc
Q 004315 82 LMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (761)
Q Consensus 82 ~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~ 118 (761)
+.-..+-|+-=++|||........|+.+++.|.+|.+
T Consensus 160 L~~~t~~~~~~~dffnYag~~~sv~l~t~p~vyi~~~ 196 (297)
T KOG2024|consen 160 LLSWTGPNSFCFDFFNYAGEQRSVCLYTTPVVYIEDI 196 (297)
T ss_pred ccccccCCcccccCCCchhhheeeeeccCCeEEecCc
Confidence 7778888888889999999999999999999998875
No 42
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=82.17 E-value=22 Score=39.24 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCcEEEc---CC-----CCC---------h-------hHHHHHHHhcCCEEEeeccc-ccCCccccccC
Q 004315 76 MVKDLVLMKQNNINAVRN---SH-----YPQ---------H-------PRWYELCDLFGLYMIDEANI-ETHGFYFSEHL 130 (761)
Q Consensus 76 ~~~dl~~mK~~g~N~vR~---~h-----~p~---------~-------~~~~dlcDe~Gi~V~~e~~~-~~~g~~~~~~~ 130 (761)
..+-++++|++|+..|=+ +| +|- . .+|.++|.++||.+..=... ..|- ..+
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~----~~~ 168 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHH----PDY 168 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCC----TTT
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcC----ccc
Confidence 455689999999999876 22 110 0 16999999999999763311 1110 000
Q ss_pred CCCCC---------C---HH-HHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCC-CcHHHHHHHHHhhCCCCeEecc
Q 004315 131 KHPTM---------E---PS-WAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG-PNHSAAAGWIRGKDPSRLLHYE 194 (761)
Q Consensus 131 ~~~~~---------~---~~-~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g-~~~~~~~~~ik~~DptRpv~~~ 194 (761)
..... . +. +.+.+..++++++.+| +|.++-+..+...... .....+.++++++-|.-.|...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 169 PPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp TSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEecc
Confidence 00000 1 12 3346778999999999 9999999988775222 2357899999999997776553
No 43
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=79.92 E-value=7.1 Score=43.72 Aligned_cols=77 Identities=13% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcCCCCC-------hhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHH
Q 004315 70 TNIESCMVKDLVLMKQNNINAVRNSHYPQ-------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (761)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~h~p~-------~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~ 142 (761)
..+.+++++||+++|++||-..=+-.... -...|++|++.|+.+..-+++..-+. |..
T Consensus 13 ~yt~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~~~~--------------~~~- 77 (386)
T PF03659_consen 13 NYTQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNSLGP--------------WSQ- 77 (386)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccCCCC--------------CCH-
Confidence 34899999999999999998876633311 12579999999999987665321110 111
Q ss_pred HHHHHHHHHHHhCCCceEEEE
Q 004315 143 MMDRVIGMVERDKNHASIICW 163 (761)
Q Consensus 143 ~~~~~~~mV~r~rNHPSIi~W 163 (761)
+++.++|+++.+||+-+-+
T Consensus 78 --~~~~~~i~~y~~~pa~~~~ 96 (386)
T PF03659_consen 78 --DELIALIKKYAGHPAYFRY 96 (386)
T ss_pred --HHHHHHHHHHcCChhHEeE
Confidence 6789999999999996653
No 44
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=78.30 E-value=9.4 Score=32.16 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=34.5
Q ss_pred eEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEEE
Q 004315 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAK 403 (761)
Q Consensus 331 ~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~L~i~~~ 403 (761)
++.|+|.. -..+.++.+...+ -+|=.+..+...++.|+||++..+.+...+ +.....++|.|++.++
T Consensus 10 ~~tv~N~g-~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v----p~~a~~G~y~v~~~a~ 76 (78)
T PF10633_consen 10 TLTVTNTG-TAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTV----PADAAPGTYTVTVTAR 76 (78)
T ss_dssp EEEEE--S-SS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-----TT--SEEEEEEEEEE
T ss_pred EEEEEECC-CCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEEC----CCCCCCceEEEEEEEE
Confidence 47889976 3456778887776 355333333333348999999988765431 1233457899988875
No 45
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=76.73 E-value=39 Score=32.12 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=56.4
Q ss_pred EEEeccccCCCCCCeEEEEEEEeCC--EEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEEEeccccc
Q 004315 332 LKISNTNFFETTQGLEFSWVAHGDG--YKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTR 409 (761)
Q Consensus 332 i~i~N~~~f~~l~~~~l~w~l~~~g--~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~L~i~~~lk~~t~ 409 (761)
+.|.|... +=++++++..+|+..| +++.+.+..-..++|.+.-.++||... +.-..++|.|.+.++
T Consensus 48 ~~l~N~~~-~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~-----~~lk~G~Y~l~~~~~------ 115 (140)
T PF11797_consen 48 ANLQNPQP-AILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGG-----KKLKPGKYTLKITAK------ 115 (140)
T ss_pred EEEECCCc-hhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCC-----cCccCCEEEEEEEEE------
Confidence 67888864 4468889999998544 677777765458999999999998641 123456999999988
Q ss_pred cccCCcEEEEEEEeeC
Q 004315 410 WAEAGHVISTAQVQLP 425 (761)
Q Consensus 410 wa~~G~~va~~Q~~L~ 425 (761)
+..++.--...|.+.
T Consensus 116 -~~~~~W~f~k~F~It 130 (140)
T PF11797_consen 116 -SGKKTWTFTKDFTIT 130 (140)
T ss_pred -cCCcEEEEEEEEEEC
Confidence 333444444556664
No 46
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=75.61 E-value=40 Score=37.69 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=63.1
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHc-CCcEEEcC-CCC-----ChhHHHHHHHhcCCEEEe-ecccccCCccccccCC
Q 004315 60 RHEHHPRVGKTNIESCMVKDLVLMKQN-NINAVRNS-HYP-----QHPRWYELCDLFGLYMID-EANIETHGFYFSEHLK 131 (761)
Q Consensus 60 ~h~~~p~~g~~~~~e~~~~dl~~mK~~-g~N~vR~~-h~p-----~~~~~~dlcDe~Gi~V~~-e~~~~~~g~~~~~~~~ 131 (761)
|-..++.-|.+-+.+...+|+..++++ ++. -++. |.| +-.++-++++++||-|.. ..++-+|.....+..
T Consensus 26 Rf~~f~~~g~~r~~~e~~~d~~~v~~L~~~~-~~v~lH~~~d~~~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GSL- 103 (378)
T TIGR02635 26 RFKVFHQEGAARNVFEKIEDAALVHRLTGIC-PTVALHIPWDRVEDYEELARYAEELGLKIGAINPNLFQDDDYKFGSL- 103 (378)
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CceeeccCCccccCHHHHHHHHHHcCCceeeeeCCccCCcccCCCCC-
Confidence 333345567777889999999988877 444 3331 444 335789999999998873 332222221101111
Q ss_pred CCCCCHHHHHHHHHHHHHHH--HHhCCCceEEEEe
Q 004315 132 HPTMEPSWAAAMMDRVIGMV--ERDKNHASIICWS 164 (761)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV--~r~rNHPSIi~Ws 164 (761)
-..+|+.++..++++++.+ -+.-..|+|.+|.
T Consensus 104 -t~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~ 137 (378)
T TIGR02635 104 -THPDKRIRRKAIDHLLECVDIAKKTGSKDISLWL 137 (378)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 2347887777777776665 3445777999993
No 47
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=71.79 E-value=13 Score=33.07 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=39.2
Q ss_pred eEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEee-CCcCCCCCEEEEEecC
Q 004315 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILS-LPLIKPHSNYEIELKS 381 (761)
Q Consensus 331 ~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~-~~~v~p~~s~~i~lp~ 381 (761)
.+.|.|-+.| ++.--.+.|+|..+|..+.+|+.. ...|+|+++..+.+|.
T Consensus 20 ~l~v~NPN~~-~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~ 70 (100)
T smart00769 20 KVKVQNPNPF-PIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPV 70 (100)
T ss_pred EEEEECCCCC-ccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEE
Confidence 4789998865 344456788888899999999984 4589999998887764
No 48
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=70.54 E-value=9.8 Score=39.26 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=25.7
Q ss_pred EeeCCeEEEEccCcEEEEEEcCcccEEEEEECCEeee
Q 004315 445 ENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVM 481 (761)
Q Consensus 445 ~~~~~~~~v~~~~~~~~~Fdk~~G~l~s~~~~g~~ll 481 (761)
.++++.+.|-.+.++.++.||.+|-|+|++|+|.|+=
T Consensus 4 t~sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~ElQ 40 (249)
T PF09284_consen 4 TDSGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTELQ 40 (249)
T ss_dssp EE-SSEEEEE---TEEEEEETTT--EEEEEETTEE-B
T ss_pred EecCCcEEEECCCCEEEEEecCCCCeEEEEECCEeee
Confidence 4556777776667799999999999999999999984
No 49
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.94 E-value=29 Score=39.17 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=41.1
Q ss_pred eEEEeccccCCCCCCeEEE------EEEEeCCEEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEEE
Q 004315 331 TLKISNTNFFETTQGLEFS------WVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAK 403 (761)
Q Consensus 331 ~i~i~N~~~f~~l~~~~l~------w~l~~~g~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~L~i~~~ 403 (761)
.+.|.|.= -.+|.++.+. |++..++. . .|.++||++.++.|... .++....++|+++|+++
T Consensus 402 ~i~I~NsG-na~LtdIkl~v~~PqgWei~Vd~~-----~--I~sL~pge~~tV~ltI~----vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 402 RISIENSG-NAPLTDIKLTVNGPQGWEIEVDES-----T--IPSLEPGESKTVSLTIT----VPEDAGAGDYRITITAK 468 (513)
T ss_pred EEEEEecC-CCccceeeEEecCCccceEEECcc-----c--ccccCCCCcceEEEEEE----cCCCCCCCcEEEEEEEe
Confidence 57889975 4678888775 44443333 2 36899999998776432 12244567999999987
No 50
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=62.10 E-value=15 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=35.8
Q ss_pred eEEEeccccCCCCCCeEEEEEEEeCCEEEE-EEEeeCCcCCCCCEEEEEecC
Q 004315 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLG-FGILSLPLIKPHSNYEIELKS 381 (761)
Q Consensus 331 ~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~-~g~~~~~~v~p~~s~~i~lp~ 381 (761)
+|.|.|-+. ..+.--.+.+.+..+|..+. .+......++|+++..+.++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 478899887 55554577888888999988 444443478898888887763
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=54.40 E-value=48 Score=31.20 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCcEEEc---CC-----CCC-----h--------hHHHHHHHhcCCEEEeecc
Q 004315 77 VKDLVLMKQNNINAVRN---SH-----YPQ-----H--------PRWYELCDLFGLYMIDEAN 118 (761)
Q Consensus 77 ~~dl~~mK~~g~N~vR~---~h-----~p~-----~--------~~~~dlcDe~Gi~V~~e~~ 118 (761)
++-++.+|++|+|+|-+ +| ||- + .++.++|-+.||-|+.-+.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 34578899999999988 22 332 1 2689999999999976543
No 52
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=54.27 E-value=95 Score=32.75 Aligned_cols=107 Identities=7% Similarity=-0.025 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCCCCC----hh-----------HHHHHHHhcCCEEEeecccccCCccccccCCCCCCC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSHYPQ----HP-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~p~----~~-----------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~ 136 (761)
..+.+++-+++++++|+..|+++.... .+ .+.++|.++||.+..|.- +.... .....
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~----~~~~~----~~~~t 154 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETM----AGQGN----EIGSS 154 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC----CCCCC----CCCCC
Confidence 356788889999999999999843322 11 246666789999988762 21100 00111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCCCCCCc------HH-HHHHHHHhhCCCCeEec
Q 004315 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPN------HS-AAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~------~~-~~~~~ik~~DptRpv~~ 193 (761)
+ +.+.++++....||.+ +.|.++|=...|.+ .. .+.++.+.+++.|..+.
T Consensus 155 ~-------~~~~~li~~v~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~v 212 (279)
T cd00019 155 F-------EELKEIIDLIKEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAI 212 (279)
T ss_pred H-------HHHHHHHHhcCCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEE
Confidence 1 3345566655458877 88999986544444 22 22333445565555544
No 53
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=52.38 E-value=65 Score=37.26 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCC-----CCChh--------------HHHHHHHhcCCEEEeecccccCCccccc----
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQHP--------------RWYELCDLFGLYMIDEANIETHGFYFSE---- 128 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~~~--------------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~---- 128 (761)
..-.+++||++||++|+++-|+|. .|.-. .+.+..=+.||-.+..+- | +....
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf---H-wDlPq~LeD 164 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF---H-WDLPQALED 164 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe---c-CCCCHHHHH
Confidence 355789999999999999999953 23222 234445567998877652 1 11000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Q 004315 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (761)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (761)
.+.. --+++..+.+.+.+.-..+++.++ |=.|...||+.
T Consensus 165 eYgG-wLn~~ivedF~~yA~~CF~~fGDr--VK~WiT~NEP~ 203 (524)
T KOG0626|consen 165 EYGG-WLNPEIVEDFRDYADLCFQEFGDR--VKHWITFNEPN 203 (524)
T ss_pred Hhcc-ccCHHHHHHHHHHHHHHHHHhccc--ceeeEEecccc
Confidence 0000 014566677777777777777776 56899999974
No 54
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=51.61 E-value=2.6e+02 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=26.7
Q ss_pred EEEEccCcEEEEEEcCcccEEEEEECC--EeeeccCcc
Q 004315 451 IQLSHQNSWEIKFDIQTGAVESWKVEG--VSVMKRGIF 486 (761)
Q Consensus 451 ~~v~~~~~~~~~Fdk~~G~l~s~~~~g--~~ll~~g~~ 486 (761)
+++..++..++++...-|.|.|++..+ +++|..+..
T Consensus 3 itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~ 40 (300)
T PF01263_consen 3 ITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDP 40 (300)
T ss_dssp EEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-ST
T ss_pred EEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCC
Confidence 445443378889999999999999999 999875543
No 55
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.75 E-value=1.1e+02 Score=33.40 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcC------------CCCC-------------h--hHHHHHHHhcCCEEEeecccccC
Q 004315 70 TNIESCMVKDLVLMKQNNINAVRNS------------HYPQ-------------H--PRWYELCDLFGLYMIDEANIETH 122 (761)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~------------h~p~-------------~--~~~~dlcDe~Gi~V~~e~~~~~~ 122 (761)
.++.+.+++-|+.|....+|.+-.+ .||. + .++.+.|.++||-|+-|+++..|
T Consensus 14 f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 14 FIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 3689999999999999999987663 1222 1 25889999999999999986555
No 56
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=48.65 E-value=1.1e+02 Score=32.20 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCCC--hh------------HHHHHHHhcCCEEE
Q 004315 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ--HP------------RWYELCDLFGLYMI 114 (761)
Q Consensus 49 NGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~--~~------------~~~dlcDe~Gi~V~ 114 (761)
|+..+++-|-|-.+ +.|++..-.+-.|++|.+++|-.-|-+ +| ..-..||++|+.|+
T Consensus 43 ~~~~~viAGPCsvE---------s~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vv 113 (286)
T COG2876 43 GRALRVIAGPCSVE---------SEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVV 113 (286)
T ss_pred CcceEEEecCcccC---------CHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeE
Confidence 34467777776432 689999999999999999999854322 11 35688999999999
Q ss_pred eecc
Q 004315 115 DEAN 118 (761)
Q Consensus 115 ~e~~ 118 (761)
.|+.
T Consensus 114 tEvm 117 (286)
T COG2876 114 TEVM 117 (286)
T ss_pred EEec
Confidence 9984
No 57
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=48.09 E-value=1e+02 Score=26.50 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=35.3
Q ss_pred eEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEE
Q 004315 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTA 402 (761)
Q Consensus 331 ~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~L~i~~ 402 (761)
.+.|.|.=. .+...+.+ ++..+|..+.+-.+ +.|+||++..+.+...+ . ..+.|.|.+.+
T Consensus 24 ~~~V~N~G~-~~~~~~~v--~~~~~~~~~~~~~i--~~L~~g~~~~v~~~~~~------~-~~G~~~i~~~i 83 (101)
T PF07705_consen 24 TVTVKNNGT-ADAENVTV--RLYLDGNSVSTVTI--PSLAPGESETVTFTWTP------P-SPGSYTIRVVI 83 (101)
T ss_dssp EEEEEE-SS-S-BEEEEE--EEEETTEEEEEEEE--SEB-TTEEEEEEEEEE-------S-S-CEEEEEEEE
T ss_pred EEEEEECCC-CCCCCEEE--EEEECCceeccEEE--CCcCCCcEEEEEEEEEe------C-CCCeEEEEEEE
Confidence 467888643 22344444 45678888844444 68999999999887542 2 34566665554
No 58
>PLN02361 alpha-amylase
Probab=47.45 E-value=55 Score=36.95 Aligned_cols=68 Identities=9% Similarity=0.178 Sum_probs=50.7
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC---------CCCh---------------hHH
Q 004315 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------YPQH---------------PRW 102 (761)
Q Consensus 47 ~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h---------~p~~---------------~~~ 102 (761)
.-+|..+.|.|.+|... . + ---..+.+.|..++++|+++|=++. |.+. ..+
T Consensus 7 ~~~~~~v~lQ~F~W~~~--~-~--~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~l 81 (401)
T PLN02361 7 IRNGREILLQAFNWESH--K-H--DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSL 81 (401)
T ss_pred hcCCCcEEEEEEeccCC--c-c--HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHH
Confidence 45689999999998642 1 1 1346778889999999999997721 2111 147
Q ss_pred HHHHHhcCCEEEeeccc
Q 004315 103 YELCDLFGLYMIDEANI 119 (761)
Q Consensus 103 ~dlcDe~Gi~V~~e~~~ 119 (761)
.+.|.+.||.|+.++.+
T Consensus 82 i~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 82 LRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHcCCEEEEEEcc
Confidence 89999999999999865
No 59
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=47.03 E-value=2.7e+02 Score=31.21 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCcEEEc---CC-----CC------------Ch----hHHHHHHHhcCCEEEeeccc-ccC--Cccc-cc
Q 004315 77 VKDLVLMKQNNINAVRN---SH-----YP------------QH----PRWYELCDLFGLYMIDEANI-ETH--GFYF-SE 128 (761)
Q Consensus 77 ~~dl~~mK~~g~N~vR~---~h-----~p------------~~----~~~~dlcDe~Gi~V~~e~~~-~~~--g~~~-~~ 128 (761)
++-++++|++|+..|=+ +| ++ +. .++.++|.+.||.+-.=... ..| .+.. ..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~ 163 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTS 163 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccccccc
Confidence 45589999999999876 23 11 10 16899999999999753321 111 0100 00
Q ss_pred cCCCCCCCHHHHHHH---HHHHHHHHHHhCCCceEEEEeCCCCCCCC-CcHHHHHHHHHhhCCCC
Q 004315 129 HLKHPTMEPSWAAAM---MDRVIGMVERDKNHASIICWSLGNEAGHG-PNHSAAAGWIRGKDPSR 189 (761)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~~~~~mV~r~rNHPSIi~WslgNE~~~g-~~~~~~~~~ik~~DptR 189 (761)
....+.+.+.+.+.+ ..++++++.+|. |.++-+..+.+.... ....++.++++++-|..
T Consensus 164 ~~~~~~~~~~~~~y~~~~~~Ql~ELit~Yg--pd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 164 SDEDPDNWPRFQEFVDDWLPQLRELVTRYK--PDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhcCC--CceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 000112233444444 899999999875 566666655443221 24678999999998876
No 60
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=46.64 E-value=98 Score=32.65 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEcCCCCC-----h-----------hHHHHHHHhcCCEEEeecccccCCccccccCCCCCCC
Q 004315 73 ESCMVKDLVLMKQNNINAVRNSHYPQ-----H-----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (761)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p~-----~-----------~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~ 136 (761)
.+.+++-|++++++|+..|+++.+.. . .++.++|.++|+.+..|. |... ...+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~----~~~~-------~~~~ 166 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI----MDTP-------FMNS 166 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee----cCCc-------ccCC
Confidence 34577889999999999999864431 1 136788899999999886 2211 0111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEec
Q 004315 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (761)
+ +++.+++++ -+||.+ ++|.++|=..++.+. .++++.+- .|.++.
T Consensus 167 ~-------~~~~~ll~~-v~~~~lgl~~D~~h~~~~~~~~---~~~i~~~~-~~i~~v 212 (283)
T PRK13209 167 I-------SKALGYAHY-LNSPWFQLYPDIGNLSAWDNDV---QMELQAGI-GHIVAF 212 (283)
T ss_pred H-------HHHHHHHHH-hCCCccceEeccchHHHhcCCH---HHHHHhCc-CcEEEE
Confidence 1 223445544 377888 778888755444432 33444332 455544
No 61
>PRK05402 glycogen branching enzyme; Provisional
Probab=44.73 E-value=2.7e+02 Score=34.15 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=69.8
Q ss_pred CCHHHHHHH-HHHHHHcCCcEEEcCC-----------CCC------h---------hHHHHHHHhcCCEEEeecccc---
Q 004315 71 NIESCMVKD-LVLMKQNNINAVRNSH-----------YPQ------H---------PRWYELCDLFGLYMIDEANIE--- 120 (761)
Q Consensus 71 ~~~e~~~~d-l~~mK~~g~N~vR~~h-----------~p~------~---------~~~~dlcDe~Gi~V~~e~~~~--- 120 (761)
-+-..+... |..+|++|+|+|=+.. |.. + .++.+.|.+.||.|+.++-+.
T Consensus 262 g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~ 341 (726)
T PRK05402 262 LSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFP 341 (726)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 355555555 5999999999997621 111 1 158999999999999987532
Q ss_pred --cCCcc---ccc-------------cCC---CCCCCHHHHHHHHHHHHHHHHHhC-----CC--ceEEEEe--------
Q 004315 121 --THGFY---FSE-------------HLK---HPTMEPSWAAAMMDRVIGMVERDK-----NH--ASIICWS-------- 164 (761)
Q Consensus 121 --~~g~~---~~~-------------~~~---~~~~~~~~~~~~~~~~~~mV~r~r-----NH--PSIi~Ws-------- 164 (761)
.+++. ... .+. .-..+|+.++.+++.++-.++.+. =. .+++-|.
T Consensus 342 ~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~ 421 (726)
T PRK05402 342 KDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW 421 (726)
T ss_pred CCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc
Confidence 11110 000 000 012356777777777777776532 11 1222211
Q ss_pred CCCCCCCCCc------HHHHHHHHHhhCCCCeEecc
Q 004315 165 LGNEAGHGPN------HSAAAGWIRGKDPSRLLHYE 194 (761)
Q Consensus 165 lgNE~~~g~~------~~~~~~~ik~~DptRpv~~~ 194 (761)
..|+.+...+ .+.+.+.+|+..|...+..+
T Consensus 422 ~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 422 IPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2232221111 45677788888888777665
No 62
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=42.91 E-value=37 Score=40.30 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEc-----------CCCC-------Ch--------hHHHHHHHhcCCEEEeec
Q 004315 72 IESCMVKDLVLMKQNNINAVRN-----------SHYP-------QH--------PRWYELCDLFGLYMIDEA 117 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~-----------~h~p-------~~--------~~~~dlcDe~Gi~V~~e~ 117 (761)
+.|...+-|..+|+||+|+|=+ |.|. .+ .+|.|.|-++||.|+.+.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 6788999999999999999988 2221 11 158999999999999876
No 63
>PRK09936 hypothetical protein; Provisional
Probab=42.59 E-value=1.8e+02 Score=31.18 Aligned_cols=96 Identities=9% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEc--CCCCC-----hh----HHHHHHHhcCCEEEeecccccCCccccccCCCCCCC-
Q 004315 69 KTNIESCMVKDLVLMKQNNINAVRN--SHYPQ-----HP----RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME- 136 (761)
Q Consensus 69 ~~~~~e~~~~dl~~mK~~g~N~vR~--~h~p~-----~~----~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~- 136 (761)
..++++++.+-++.+++.||+++=+ +.|-+ .. ..++.|.+.||-|+...++. ..|. .....|
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D-p~y~-----q~~~~d~ 106 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD-PEFF-----MHQKQDG 106 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC-hHHH-----HHHhcCc
Confidence 4578999999999999999999987 33321 12 46899999999999877531 0111 111223
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCceE--EEEeCCCCCC
Q 004315 137 ---PSWAAAMMDRVIGMVERDKNHASI--ICWSLGNEAG 170 (761)
Q Consensus 137 ---~~~~~~~~~~~~~mV~r~rNHPSI--i~WslgNE~~ 170 (761)
+.|.+..+.+...+.+.-++||.+ -.|=+-=|..
T Consensus 107 ~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 107 AALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 445555555556677777777776 6687777764
No 64
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=42.34 E-value=2.3e+02 Score=30.10 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=21.4
Q ss_pred CcEEEEEEcCcccEEEEEEC--CEeeecc
Q 004315 457 NSWEIKFDIQTGAVESWKVE--GVSVMKR 483 (761)
Q Consensus 457 ~~~~~~Fdk~~G~l~s~~~~--g~~ll~~ 483 (761)
++.++++...-|.|.|++.. |+++|..
T Consensus 6 ~~~~a~v~~~Ga~l~s~~~~~~g~e~l~~ 34 (288)
T cd09024 6 EFLTVTISEHGAELTSIKDKKTGREYLWQ 34 (288)
T ss_pred CcEEEEEeccCcEEEEEEeCCCCCEEEeC
Confidence 44777777778899999998 9999843
No 65
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=40.74 E-value=19 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.4
Q ss_pred eCCCCeEEEEEEEEeeE
Q 004315 21 HASGPVVDCESCLVGIR 37 (761)
Q Consensus 21 ~~~g~~~d~~~~~~GfR 37 (761)
..+|+++|+.+.+||||
T Consensus 94 ~~~g~~~d~~~~~~GfR 110 (110)
T PF00703_consen 94 DDDGEVLDSIETRFGFR 110 (110)
T ss_dssp EETTEEEEEEEEEEEB-
T ss_pred EeCCEEEEEEEeEeeEC
Confidence 45788999999999999
No 66
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=40.24 E-value=5.1e+02 Score=29.03 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC---CCC--h--------hHHHHHHHhcCCEEEeecc-cccCC-cccc
Q 004315 63 HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ--H--------PRWYELCDLFGLYMIDEAN-IETHG-FYFS 127 (761)
Q Consensus 63 ~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h---~p~--~--------~~~~dlcDe~Gi~V~~e~~-~~~~g-~~~~ 127 (761)
.+|..+.+-+.......++.++++|+..|=++. +|. + .++-++++++||-|..-.+ +-.|. |. .
T Consensus 21 ~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-~ 99 (382)
T TIGR02631 21 RDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFK-D 99 (382)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcccc-C
Confidence 356655555667788889999999999998752 231 1 3678899999998764322 11111 11 0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHH--HHhCCCceEEEEeC
Q 004315 128 EHLKHPTMEPSWAAAMMDRVIGMV--ERDKNHASIICWSL 165 (761)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~mV--~r~rNHPSIi~Wsl 165 (761)
+ ...+.+++.++..++.+++.| -+--+-+.|.+|+.
T Consensus 100 g--~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G 137 (382)
T TIGR02631 100 G--GFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGG 137 (382)
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 1 112336655555555555444 23346678999975
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=39.62 E-value=30 Score=36.51 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCcEEEcCCC---C--Ch--------------------hHHHHHHHhcCCEEEeeccc
Q 004315 74 SCMVKDLVLMKQNNINAVRNSHY---P--QH--------------------PRWYELCDLFGLYMIDEANI 119 (761)
Q Consensus 74 e~~~~dl~~mK~~g~N~vR~~h~---p--~~--------------------~~~~dlcDe~Gi~V~~e~~~ 119 (761)
.-+...|..+|++|+|+|-++.- | .. .++.+.|.+.||.|+.++.+
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 45677799999999999998421 1 00 14899999999999999864
No 68
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=38.30 E-value=2.6e+02 Score=30.40 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=23.7
Q ss_pred eEEEEEEEEEecCCeEEEEEEEeeCCCCCC
Q 004315 560 LFEIVIDYTIYGSGNVIVECNFKPNTSDLP 589 (761)
Q Consensus 560 ~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p 589 (761)
.+.++++|++.+++.|.|++++... ..+|
T Consensus 125 ~~~~~v~y~L~~~~~L~i~~~~~~~-~~~p 153 (326)
T cd09019 125 NLTVTVTYTLTDDNELTIEYEATTD-KPTP 153 (326)
T ss_pred EEEEEEEEEECCCCEEEEEEEEEeC-CCeE
Confidence 5788999999987899999999865 5554
No 69
>PLN02784 alpha-amylase
Probab=34.66 E-value=1.3e+02 Score=37.10 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=50.4
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC---------CCCh---------------hHH
Q 004315 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------YPQH---------------PRW 102 (761)
Q Consensus 47 ~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h---------~p~~---------------~~~ 102 (761)
.-+|..+++.|.+|.-. .-|. --..+...+..++++|+|+|=+.. |-.. ..+
T Consensus 498 ~~~~~eVmlQgF~Wds~--~dg~--w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~L 573 (894)
T PLN02784 498 TGSGFEILCQGFNWESH--KSGR--WYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDL 573 (894)
T ss_pred ccCCceEEEEeEEcCcC--CCCc--hHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHH
Confidence 45788999999998532 2121 145778889999999999997721 2111 147
Q ss_pred HHHHHhcCCEEEeeccc
Q 004315 103 YELCDLFGLYMIDEANI 119 (761)
Q Consensus 103 ~dlcDe~Gi~V~~e~~~ 119 (761)
.+.|.+.||.|+.++-+
T Consensus 574 I~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 574 VKSFHEVGIKVLGDAVL 590 (894)
T ss_pred HHHHHHCCCEEEEEECc
Confidence 89999999999999854
No 70
>smart00642 Aamy Alpha-amylase domain.
Probab=34.56 E-value=1e+02 Score=30.07 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCCC---CC----------------h---------hHHHHHHHhcCCEEEeeccc
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSHY---PQ----------------H---------PRWYELCDLFGLYMIDEANI 119 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~---p~----------------~---------~~~~dlcDe~Gi~V~~e~~~ 119 (761)
+-+.+...|..+|++|+|+|-++.- +. + .++.+.|-+.||.|+.++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 5677888889999999999977321 10 0 14789999999999999864
No 71
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=34.53 E-value=37 Score=26.06 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.2
Q ss_pred EEEEEecCCeEEEEEEEe
Q 004315 565 IDYTIYGSGNVIVECNFK 582 (761)
Q Consensus 565 ~~Y~i~~~G~i~v~~~~~ 582 (761)
+.++|++||+|.+++..-
T Consensus 1 I~~~I~~dG~V~~~v~G~ 18 (48)
T PF11211_consen 1 IEFTIYPDGRVEEEVEGF 18 (48)
T ss_pred CEEEECCCcEEEEEEEec
Confidence 368999999999998764
No 72
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=34.02 E-value=13 Score=42.65 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=42.1
Q ss_pred CCCeEeeccccccCCCC--c---------cHHHHH----HHHHccCCceeEeeeecccCCceeecCCCceEeeecCccCC
Q 004315 226 TRPLILCEYSHAMGNSN--G---------NIHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290 (761)
Q Consensus 226 ~kP~i~~Eygh~~gn~~--g---------~~~~yw----~~~~~~p~~~Gg~vW~~~D~~~~~~~~~g~~~~~yggdf~~ 290 (761)
++|++++|-|.+..... + .++++. +++..--.+.|-+.|.+.|.--.. . +|.-.
T Consensus 355 ~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~---~-----Gy~~r--- 423 (455)
T PF00232_consen 355 NPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWA---E-----GYKKR--- 423 (455)
T ss_dssp SSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGG---G-----GGGSE---
T ss_pred CCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccc---c-----CccCc---
Confidence 59999999996532211 1 123333 344444679999999999952210 0 11111
Q ss_pred CCCCcccccCCccCCC------CCCCCcHHHHHHhhc
Q 004315 291 TPNDLNFCLNGLLWPD------RTPHPALHEVKYVYQ 321 (761)
Q Consensus 291 ~~~d~~f~~~Glv~~d------r~pkp~~~~~k~~~~ 321 (761)
| ||+.-| |+||++++-+|++.+
T Consensus 424 ------f---Gl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 424 ------F---GLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp -----------SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred ------c---CceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 2 555555 999999999998765
No 73
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.99 E-value=2.1e+02 Score=29.53 Aligned_cols=101 Identities=11% Similarity=0.166 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEcCCC--CCh---h-----------HHHHHHHhcCCEEEeecc--cccCCccccccCCCCC
Q 004315 73 ESCMVKDLVLMKQNNINAVRNSHY--PQH---P-----------RWYELCDLFGLYMIDEAN--IETHGFYFSEHLKHPT 134 (761)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~--p~~---~-----------~~~dlcDe~Gi~V~~e~~--~~~~g~~~~~~~~~~~ 134 (761)
.+.+++-|++++++|+..||+... |.. + ++.++|.++||.+..|.- .++.++. .
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~--------l 154 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFF--------L 154 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCCh--------h
Confidence 366778899999999999998432 111 1 246789999999998851 1111110 1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEec
Q 004315 135 MEPSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 135 ~~~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (761)
.+ .+++.+++++. +||.+ +.|.++|=...+.+..+ +++.+- .|..++
T Consensus 155 ~t-------~~~~~~li~~v-~~~~~~i~~D~~h~~~~~e~~~~---~i~~~~-~~i~~v 202 (254)
T TIGR03234 155 TT-------TEQALAVIDDV-GRENLKLQYDLYHMQRMGGDLAR---TLAAYA-AHIGHV 202 (254)
T ss_pred cC-------HHHHHHHHHHh-CCCCEeEeeehhhhhhhCCCHHH---HHHHhh-ccEeEE
Confidence 11 23456666554 47776 88999886655555444 444432 355544
No 74
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.51 E-value=1.8e+02 Score=33.43 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=55.9
Q ss_pred EEEeeEEEEEeCC-EEE--------------------ECCEEEE--EEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 004315 32 CLVGIRQVSKAPK-QLL--------------------VNGNPVV--IRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNI 88 (761)
Q Consensus 32 ~~~GfR~i~~~~~-~f~--------------------lNGk~v~--lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~ 88 (761)
.+.||+.||+-++ .|- +.+.++. +||.|.... ...++..+++|++.+.+.|+
T Consensus 36 d~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~-----~~~pddvv~~~v~~A~~~Gv 110 (448)
T PRK12331 36 DNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGY-----RNYADDVVESFVQKSVENGI 110 (448)
T ss_pred HHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecccccccc-----ccCchhhHHHHHHHHHHCCC
Confidence 3569999999543 121 2445554 778775322 23567888999999999999
Q ss_pred cEEEcCCC----CChhHHHHHHHhcCCEEEe
Q 004315 89 NAVRNSHY----PQHPRWYELCDLFGLYMID 115 (761)
Q Consensus 89 N~vR~~h~----p~~~~~~dlcDe~Gi~V~~ 115 (761)
..||+... .+.....+++.+.|+.|..
T Consensus 111 d~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 111 DIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 99999433 3445688999999988754
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.35 E-value=3.1e+02 Score=28.65 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEcCCCCC----h------------hHHHHHHHhcCCEEEeecccccCCccccccCCCCCCC
Q 004315 73 ESCMVKDLVLMKQNNINAVRNSHYPQ----H------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (761)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p~----~------------~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~ 136 (761)
.+.+++-++.++++|+.+|+++.... . .++.++|.++||.+..|.. +.... ....+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~----~~~~~----~~~~t 160 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPL----TPYES----NVVCN 160 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC----CCCcc----cccCC
Confidence 35777888999999999999954311 1 2478999999999988852 11000 00111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEec
Q 004315 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (761)
+ +.+.++++. -+||.| +.+.++|-...+.+ +.+.++++- .|..+.
T Consensus 161 ~-------~~~~~l~~~-~~~~~v~~~~D~~h~~~~~~~---~~~~i~~~~-~rI~~v 206 (275)
T PRK09856 161 A-------NDVLHALAL-VPSPRLFSMVDICAPYVQAEP---VMSYFDKLG-DKLRHL 206 (275)
T ss_pred H-------HHHHHHHHH-cCCCcceeEEeecchhcCCCC---HHHHHHHhC-CcEEEE
Confidence 1 234556653 467776 55778875444443 445555553 566554
No 76
>PRK12677 xylose isomerase; Provisional
Probab=30.64 E-value=8.1e+02 Score=27.46 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC---CCC----------hhHHHHHHHhcCCEEEeecc-cccCC-ccccc
Q 004315 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ----------HPRWYELCDLFGLYMIDEAN-IETHG-FYFSE 128 (761)
Q Consensus 64 ~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h---~p~----------~~~~~dlcDe~Gi~V~~e~~-~~~~g-~~~~~ 128 (761)
+|....+-+.-....-+..++++|+..|=++. +|. .+++-++++++||-|..-.+ .-.|. |. .
T Consensus 21 ~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~-~- 98 (384)
T PRK12677 21 DPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK-D- 98 (384)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc-C-
Confidence 55544444555577889999999999998753 321 24688999999999765322 11111 11 0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--HhCCCceEEEEeCC
Q 004315 129 HLKHPTMEPSWAAAMMDRVIGMVE--RDKNHASIICWSLG 166 (761)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~--r~rNHPSIi~Wslg 166 (761)
....+.++..++..++.+++.|+ +.-+=|.|++|+..
T Consensus 99 -g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~ 137 (384)
T PRK12677 99 -GAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGR 137 (384)
T ss_pred -CcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCC
Confidence 11123366666665666655553 23467889999663
No 77
>PLN00196 alpha-amylase; Provisional
Probab=30.34 E-value=1.6e+02 Score=33.49 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=46.5
Q ss_pred EEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCC---------C-------CCh---------hHHHHHH
Q 004315 52 PVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------Y-------PQH---------PRWYELC 106 (761)
Q Consensus 52 ~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h---------~-------p~~---------~~~~dlc 106 (761)
.+++.|.+|+.. +..|. .-..+...|..+|++|+++|=++. | ... ..+.+.|
T Consensus 25 ~v~~Q~F~W~~~-~~~gg--~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~a 101 (428)
T PLN00196 25 QVLFQGFNWESW-KQNGG--WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAF 101 (428)
T ss_pred CEEEEeeccCCC-CCCCc--CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHH
Confidence 578999998643 33221 356678889999999999997721 1 101 1478889
Q ss_pred HhcCCEEEeeccc
Q 004315 107 DLFGLYMIDEANI 119 (761)
Q Consensus 107 De~Gi~V~~e~~~ 119 (761)
.+.||.|+.++-+
T Consensus 102 H~~GIkVilDvV~ 114 (428)
T PLN00196 102 HGKGVQVIADIVI 114 (428)
T ss_pred HHCCCEEEEEECc
Confidence 9999999998854
No 78
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=30.07 E-value=2.1e+02 Score=27.90 Aligned_cols=75 Identities=11% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCcEEEc-CCCCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhC
Q 004315 77 VKDLVLMKQNNINAVRN-SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK 155 (761)
Q Consensus 77 ~~dl~~mK~~g~N~vR~-~h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r 155 (761)
...+..++++|+.+|=. ...+.+..+++.|++.||-+.. +++. +.. .+ .-...+..+.++-+++..-+
T Consensus 22 ~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~-~~~~--~~~------~~--~~~~~~~~v~~aL~~ild~~ 90 (164)
T PF03162_consen 22 PANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIH-IPMS--SSK------DP--WVPISEEQVAEALEIILDPR 90 (164)
T ss_dssp HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE----------------GG--G----HHHHHHHHHHHH-GG
T ss_pred hhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEE-eccc--ccc------Cc--cccCCHHHHHHHHHHHhCCC
Confidence 35678899999999765 5566667889999999998875 2111 000 00 00112233444556666678
Q ss_pred CCceEEE
Q 004315 156 NHASIIC 162 (761)
Q Consensus 156 NHPSIi~ 162 (761)
|||-++.
T Consensus 91 n~PvLiH 97 (164)
T PF03162_consen 91 NYPVLIH 97 (164)
T ss_dssp G-SEEEE
T ss_pred CCCEEEE
Confidence 9998775
No 79
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=30.05 E-value=2.2e+02 Score=31.69 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCh--------------hHHHHHHHhcCCEEE
Q 004315 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMI 114 (761)
Q Consensus 49 NGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~--------------~~~~dlcDe~Gi~V~ 114 (761)
+|++++|-|-|- .-+.+.+.+..+.+|+.|+..+|-+.+-+. ..+.+.|+++||.++
T Consensus 116 ~~~~~~iaGpc~---------iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~ 186 (360)
T PRK12595 116 DGNQSFIFGPCS---------VESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVI 186 (360)
T ss_pred CCCeeeEEeccc---------ccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEE
Confidence 456666666543 236899999999999999999998433211 257889999999999
Q ss_pred eec
Q 004315 115 DEA 117 (761)
Q Consensus 115 ~e~ 117 (761)
.+.
T Consensus 187 t~v 189 (360)
T PRK12595 187 SEI 189 (360)
T ss_pred Eee
Confidence 876
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=29.82 E-value=85 Score=32.04 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=47.1
Q ss_pred HHHHHHcCCcEEEcCCC--CChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHH-HHhCC
Q 004315 80 LVLMKQNNINAVRNSHY--PQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMV-ERDKN 156 (761)
Q Consensus 80 l~~mK~~g~N~vR~~h~--p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV-~r~rN 156 (761)
-++|+++|++.+.-+.. ...++..+.|.+.|+-|+.-+.....|-. +....+..+..+. .++..... ..+.+
T Consensus 6 ~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~g----m~iv~~~~eL~~~-~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 6 RKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRG----MRIVHNEEELEEA-FERAQRESPAAFGD 80 (211)
T ss_dssp HHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTS----EEEESSHHHHHHH-HHHHHHHHHHHHST
T ss_pred HHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccc----cccccchhhhhhh-hhhccccCcccccc
Confidence 47899999999999887 67789999999999999987643322211 1112233444433 34444333 45667
Q ss_pred CceEE
Q 004315 157 HASII 161 (761)
Q Consensus 157 HPSIi 161 (761)
+|..+
T Consensus 81 ~~v~i 85 (211)
T PF02786_consen 81 GPVLI 85 (211)
T ss_dssp S-EEE
T ss_pred ceEEE
Confidence 77665
No 81
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.78 E-value=1.3e+02 Score=24.05 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCcEEEcC-C--CCChhHHHHHHHhcCCEEEe
Q 004315 76 MVKDLVLMKQNNINAVRNS-H--YPQHPRWYELCDLFGLYMID 115 (761)
Q Consensus 76 ~~~dl~~mK~~g~N~vR~~-h--~p~~~~~~dlcDe~Gi~V~~ 115 (761)
.+.-++.+|+.|+++|=++ | ....+.++++|.++||.|+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEE
Confidence 4566899999999999884 2 33457899999999999985
No 82
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.57 E-value=1.4e+02 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCCCCC--------------hhHHHHHHHhcCCEEEeec
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSHYPQ--------------HPRWYELCDLFGLYMIDEA 117 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~p~--------------~~~~~dlcDe~Gi~V~~e~ 117 (761)
++|++.+-.+.+|++|++.+|-+-|-+ -+.+.+.|+++||.++.|.
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 789999999999999999998754431 1258899999999999877
No 83
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.57 E-value=2.9e+02 Score=29.34 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=45.7
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCC-----CC---------hhHHHHHHHhcCCEEEe
Q 004315 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHY-----PQ---------HPRWYELCDLFGLYMID 115 (761)
Q Consensus 50 Gk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~-----p~---------~~~~~dlcDe~Gi~V~~ 115 (761)
|+.+.|-|-|-.+ +.+++.+-.+.+|++|+..+|.+.+ |. ...+-++|.++||.+..
T Consensus 26 ~~~~~iaGPCsie---------~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 26 EEKIIIAGPCAVE---------SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred CCEEEEEeCCcCC---------CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 4556777877533 6889999999999999999999633 11 12477999999999998
Q ss_pred ec
Q 004315 116 EA 117 (761)
Q Consensus 116 e~ 117 (761)
|+
T Consensus 97 e~ 98 (266)
T PRK13398 97 EV 98 (266)
T ss_pred ee
Confidence 87
No 84
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=2.4e+02 Score=33.85 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=93.6
Q ss_pred EEEEEEEeeEEEEEeCCEEEE-----CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc--CCCCChh
Q 004315 28 DCESCLVGIRQVSKAPKQLLV-----NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN--SHYPQHP 100 (761)
Q Consensus 28 d~~~~~~GfR~i~~~~~~f~l-----NGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~--~h~p~~~ 100 (761)
|+.++.-||-+.-+-=+.+.| |||+.|--- .-.-..+++|.+ .+++.|=++|-+ -|.-.++
T Consensus 373 DV~~Vd~~FDehdiP~DviWLDIEhtdgKrYFTWD---------k~~FP~P~~Ml~---kLa~kgRklV~IvDPHIKkD~ 440 (915)
T KOG1066|consen 373 DVLTVDQGFDEHDIPYDVIWLDIEHTDGKRYFTWD---------KHKFPNPKDMLK---KLASKGRKLVTIVDPHIKKDD 440 (915)
T ss_pred hhhhhhcCccccCCccceEEEeeeecCCceeEeec---------cccCCCHHHHHH---HHHhcCCceEEEeCcccccCC
Confidence 333445555554443344443 676655321 112234666644 456777777766 3433332
Q ss_pred --HHHHHHHhcCCEEEeecccccCCccccccCCC-CCCCHHHHHHHHHHHHHHHHHh-CCCceEEEEeCCCCCC--CCCc
Q 004315 101 --RWYELCDLFGLYMIDEANIETHGFYFSEHLKH-PTMEPSWAAAMMDRVIGMVERD-KNHASIICWSLGNEAG--HGPN 174 (761)
Q Consensus 101 --~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~mV~r~-rNHPSIi~WslgNE~~--~g~~ 174 (761)
.+++-|-.+|.+|-+--...--|++..+.... ..-+|+.++-+.++.. ..++ ..-|++.+|.=.||+. .|++
T Consensus 441 ~Y~v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fa--fd~y~g~t~nl~iWNDMNEPSVFnGPE 518 (915)
T KOG1066|consen 441 GYFVHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFA--FDRYEGSTPNLFIWNDMNEPSVFNGPE 518 (915)
T ss_pred CeEEhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcc--cccccCCCCceEEeccCCCccccCCCc
Confidence 46899999999998743211112221111111 1225555554443333 2333 3567799999999996 4665
Q ss_pred HHHHHHHHHhhCCCCeEeccCCCCCCCCCceecCCCC--chHHHHHHhhCCCCCCCeEeecc
Q 004315 175 HSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYM--RVWDIVMIAKDPTETRPLILCEY 234 (761)
Q Consensus 175 ~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~--~~~~~~~~~~~~~~~kP~i~~Ey 234 (761)
...-.++ +||++ ...+..-.+++.|+- ..+.+..... ...||++++--
T Consensus 519 iTm~kDa---------iHyGg-~EHRdVHNiYG~~~h~aT~dGl~~R~~--g~~RPFvLsRa 568 (915)
T KOG1066|consen 519 ITMPKDA---------IHYGG-WEHRDVHNIYGLMVHMATFDGLIARSG--GKERPFVLSRA 568 (915)
T ss_pred cccchhh---------hhcCC-eeechhhhhhceeeeehhhhhhhhhcC--CCcCceEEEec
Confidence 4333332 33433 233455666665442 2333333322 24899999754
No 85
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.08 E-value=2.1e+02 Score=28.03 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEcCCC-----CCh-------------hHHHHHHHhcCCEEEeecccccCCccccccCCCCC
Q 004315 73 ESCMVKDLVLMKQNNINAVRNSHY-----PQH-------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPT 134 (761)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~-----p~~-------------~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~ 134 (761)
.+.+++-+++++.+|+..|+++-. +.. ..+.+.|+++|+.+..|.. +.... ..+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~----~~~~~---~~~~ 142 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH----PGPFS---ETPF 142 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S----SSSSS---SEES
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc----cCccc---cchh
Confidence 688999999999999999999733 111 1468899999999998863 22100 0001
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCcHHHHHHHH
Q 004315 135 MEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWI 182 (761)
Q Consensus 135 ~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~~~~~~~i 182 (761)
+ .+++.++++....--.=++|.++|-...+.+..++.+.+
T Consensus 143 -~-------~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~ 182 (213)
T PF01261_consen 143 -S-------VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRL 182 (213)
T ss_dssp -S-------HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHH
T ss_pred -h-------HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHh
Confidence 1 234556666544333567788887665555544444433
No 86
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=28.05 E-value=3.2e+02 Score=29.86 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcCC------------CC--------------------C--hhHHHHHHHhcCCEEEe
Q 004315 70 TNIESCMVKDLVLMKQNNINAVRNSH------------YP--------------------Q--HPRWYELCDLFGLYMID 115 (761)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~h------------~p--------------------~--~~~~~dlcDe~Gi~V~~ 115 (761)
.++.+.+++-|+.|...++|.+-.+- || . -.++.+.|.+.||-|+-
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 46899999999999999999986621 11 1 12578999999999999
Q ss_pred ecccccC
Q 004315 116 EANIETH 122 (761)
Q Consensus 116 e~~~~~~ 122 (761)
|+++..|
T Consensus 94 EiD~PGH 100 (329)
T cd06568 94 EIDMPGH 100 (329)
T ss_pred ecCCcHH
Confidence 9986555
No 87
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=27.97 E-value=69 Score=33.34 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCC---ceEEEEeCCCCCCC--C------Cc----------HHHHHHHHHhhCCCCeEe
Q 004315 136 EPSWAAAMMDRVIGMVERDKNH---ASIICWSLGNEAGH--G------PN----------HSAAAGWIRGKDPSRLLH 192 (761)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNH---PSIi~WslgNE~~~--g------~~----------~~~~~~~ik~~DptRpv~ 192 (761)
++.+.+.+ +.-|+.++.+. -.|=+|+|.||+.. + ++ .-++++.||++||+-.|.
T Consensus 102 ~~~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 102 NPVYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp SEEEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred cHhHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 44565555 45566665544 46999999999952 1 11 346788999999998775
No 88
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.65 E-value=3.2e+02 Score=29.32 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=36.6
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEE------E------c---CCCCChhHHHHHHHhcCCEEE
Q 004315 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAV------R------N---SHYPQHPRWYELCDLFGLYMI 114 (761)
Q Consensus 50 Gk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~v------R------~---~h~p~~~~~~dlcDe~Gi~V~ 114 (761)
|++++..|---|- ..-+..+++.|+..| + + +|..+ |..++.+.+.|+-|+
T Consensus 31 ~~~vy~lG~iVHN--------------~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~-~~~~~~~~~~g~~vi 95 (281)
T PRK12360 31 GKKIYTLGPLIHN--------------NQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVS-KKVYKDLKDKGLEII 95 (281)
T ss_pred CCCeEEecCCcCC--------------HHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCC-HHHHHHHHHCCCeEE
Confidence 7788888876652 233555667777776 1 1 45553 678999999999999
Q ss_pred eec
Q 004315 115 DEA 117 (761)
Q Consensus 115 ~e~ 117 (761)
|-.
T Consensus 96 DaT 98 (281)
T PRK12360 96 DAT 98 (281)
T ss_pred eCC
Confidence 743
No 89
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=27.64 E-value=5.1e+02 Score=26.94 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCc
Q 004315 95 HYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPN 174 (761)
Q Consensus 95 h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~ 174 (761)
+.|-=++++++|.+.++.+..|+-...+ ..+ ....+.+.+.++++++.-.+.+++||..+
T Consensus 112 ~IPtL~evl~~~~~~~~~l~iEiK~~~~------------~~~-~~~~~~~~v~~~l~~~~~~~~~v~~s~~~------- 171 (252)
T cd08574 112 SIPSLAELLRLAKKHNKSVIFDLRRPPP------------NHP-YYQSYVNITLDTILASGIPQHQVFWLPDE------- 171 (252)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEecCCcc------------cCc-cHHHHHHHHHHHHHHcCCCcccEEEccHH-------
Confidence 4455668999999888888877731100 001 01234566778888766556677777431
Q ss_pred HHHHHHHHHhhCCCCeEec
Q 004315 175 HSAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 175 ~~~~~~~ik~~DptRpv~~ 193 (761)
..+.+|+++|..++.+
T Consensus 172 ---~~~~~~~~~p~~~~~~ 187 (252)
T cd08574 172 ---YRALVRKVAPGFQQVS 187 (252)
T ss_pred ---HHHHHHHHCCCCeEee
Confidence 2478999999876643
No 90
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=2.6e+02 Score=28.16 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=60.9
Q ss_pred EEEEEEeeEEEEEeCCEEEEC-----CEEEEEEeeecCCCCC--------CCCCCCCHHHHHHHHHHHHHcC-CcEEEc-
Q 004315 29 CESCLVGIRQVSKAPKQLLVN-----GNPVVIRGVNRHEHHP--------RVGKTNIESCMVKDLVLMKQNN-INAVRN- 93 (761)
Q Consensus 29 ~~~~~~GfR~i~~~~~~f~lN-----Gk~v~lrGvn~h~~~p--------~~g~~~~~e~~~~dl~~mK~~g-~N~vR~- 93 (761)
+.-..||.|.++++++++.|+ |++.| |.+.+-..-. +.+++-|-..+...|..||+++ =|++-+
T Consensus 38 TiGvefg~r~~~id~k~IKlqiwDtaGqe~f-rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImL 116 (216)
T KOG0098|consen 38 TIGVEFGARMVTIDGKQIKLQIWDTAGQESF-RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIML 116 (216)
T ss_pred eeeeeeceeEEEEcCceEEEEEEecCCcHHH-HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEE
Confidence 345678888888876665553 33321 1111111111 2233345566777788888874 777655
Q ss_pred -CC--------CCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhC
Q 004315 94 -SH--------YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK 155 (761)
Q Consensus 94 -~h--------~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r 155 (761)
.+ -...++==..|.++||.-+ |..-. ....-.+++.+-..++++...
T Consensus 117 iGNKsDL~~rR~Vs~EEGeaFA~ehgLifm-ETSak--------------t~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 117 IGNKSDLEARREVSKEEGEAFAREHGLIFM-ETSAK--------------TAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred EcchhhhhccccccHHHHHHHHHHcCceee-hhhhh--------------hhhhHHHHHHHHHHHHHHHHH
Confidence 11 1223455678999999888 54210 112244566666677776543
No 91
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=26.90 E-value=3.5e+02 Score=25.55 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=34.0
Q ss_pred EEEeccccCCCCCCeEEEEEEE-eCCEEEEEEEee-----------CCcCCCCCEEEEEecCC
Q 004315 332 LKISNTNFFETTQGLEFSWVAH-GDGYKLGFGILS-----------LPLIKPHSNYEIELKSS 382 (761)
Q Consensus 332 i~i~N~~~f~~l~~~~l~w~l~-~~g~~v~~g~~~-----------~~~v~p~~s~~i~lp~~ 382 (761)
.+|+|..++.-. --.++-++. .+|+++.+..+. ...++||++..|.+...
T Consensus 74 g~i~N~~~~~~~-~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 74 GTIRNRADFPQA-LPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLE 135 (149)
T ss_pred EEEEeCCCCccc-CceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEee
Confidence 578999876422 125555666 688888888772 12688999988887643
No 92
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.42 E-value=5.4e+02 Score=26.96 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEcCCCC---C-h-h-----------HHHHHHHhcCCEEEeecccccCCccccccCCCCCCC
Q 004315 73 ESCMVKDLVLMKQNNINAVRNSHYP---Q-H-P-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (761)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p---~-~-~-----------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~ 136 (761)
.+.+++-+++++++|++.|+++.+. . . + ++.++|.++|+.+..|.- +.. ...+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~----~~~-------~~~t 161 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM----DTP-------FMSS 161 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC----CCc-------hhcC
Confidence 3457888999999999999996431 1 1 1 357899999999998852 110 0111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCCCCCCcHHHHHHHHHhhCCCCeEec
Q 004315 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (761)
+ .++.++++.. +||.| +.|.++|=...+.+. .+.++.. ..|..+.
T Consensus 162 ~-------~~~~~li~~v-~~~~v~~~~D~~h~~~~~~~~---~~~i~~~-~~~i~~v 207 (279)
T TIGR00542 162 I-------SKWLKWDHYL-NSPWFTLYPDIGNLSAWDNDV---QMELQLG-IDKIVAI 207 (279)
T ss_pred H-------HHHHHHHHHc-CCCceEEEeCcChhhhccCCH---HHHHHHh-hhhEEEE
Confidence 1 2345555443 67765 568899855455443 2334433 2465554
No 93
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=25.87 E-value=1.1e+02 Score=29.49 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCCcHHHHHHhhcceEEE--eecceEEEeccccCCCCCCeEEEEEEEeCCEEEEEEEeeC-CcCCCCCEEEEEecC
Q 004315 309 PHPALHEVKYVYQAIKVS--LKKGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSL-PLIKPHSNYEIELKS 381 (761)
Q Consensus 309 pkp~~~~~k~~~~pi~~~--~~~~~i~i~N~~~f~~l~~~~l~w~l~~~g~~v~~g~~~~-~~v~p~~s~~i~lp~ 381 (761)
+||+...+|.-+--+.-+ .-=++++|.|-++|- +---.+.|.++.||..+++|+.-- ..|+|++..++.++.
T Consensus 31 ~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fP-ipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFP-IPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred CCCCceEEEEEEEEEeccceEEEEEEEecCCCCcc-eeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEE
Confidence 456665554332222211 112468999998873 221245678888998899998733 368898888887763
No 94
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.59 E-value=1.5e+02 Score=31.94 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEcC--C---CCCh---------------hHHHHHHHhcCCEEEeecccc
Q 004315 67 VGKTNIESCMVKDLVLMKQNNINAVRNS--H---YPQH---------------PRWYELCDLFGLYMIDEANIE 120 (761)
Q Consensus 67 ~g~~~~~e~~~~dl~~mK~~g~N~vR~~--h---~p~~---------------~~~~dlcDe~Gi~V~~e~~~~ 120 (761)
+|+.++.+.+++-|+.|...++|.+=.+ + ++.. .++.+.|.++||-|+-|+..-
T Consensus 10 R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~p 83 (301)
T cd06565 10 RNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTL 83 (301)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCH
Confidence 3456789999999999999999998772 1 1111 158899999999999998743
No 95
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.33 E-value=85 Score=34.84 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcC-CCCChh---------HHHHHHHhcCCEEEeecc
Q 004315 72 IESCMVKDLVLMKQNNINAVRNS-HYPQHP---------RWYELCDLFGLYMIDEAN 118 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~-h~p~~~---------~~~dlcDe~Gi~V~~e~~ 118 (761)
+.+...+-|+.|+++|+..|=|| |.|+.. .+.++|.++||.|+.+++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 68899999999999999999997 666642 478999999999999885
No 96
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.81 E-value=3.4e+02 Score=32.42 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=45.6
Q ss_pred EEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCC----ChhHHHHHHHhcCCEEEeec
Q 004315 53 VVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYP----QHPRWYELCDLFGLYMIDEA 117 (761)
Q Consensus 53 v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p----~~~~~~dlcDe~Gi~V~~e~ 117 (761)
..+||.|.-.. ...+++.++..++++++.|+-.+|+...- +.....+.+-+.|..+..-+
T Consensus 80 mL~Rg~N~vGy-----~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i 143 (596)
T PRK14042 80 MLLRGQNLLGY-----RNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAI 143 (596)
T ss_pred EEecccccccc-----ccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEE
Confidence 45889886322 23578899999999999999999995433 34457899999999777543
No 97
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.71 E-value=4.5e+02 Score=28.55 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcC----------CCC------------------------------Ch--hHHHHHHH
Q 004315 70 TNIESCMVKDLVLMKQNNINAVRNS----------HYP------------------------------QH--PRWYELCD 107 (761)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~----------h~p------------------------------~~--~~~~dlcD 107 (761)
.++.+.+++-|+.|...++|.+-.+ .+| .. .++.+.|.
T Consensus 13 ~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 92 (326)
T cd06564 13 YYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAK 92 (326)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHH
Confidence 3689999999999999999998651 111 11 15889999
Q ss_pred hcCCEEEeecccccC
Q 004315 108 LFGLYMIDEANIETH 122 (761)
Q Consensus 108 e~Gi~V~~e~~~~~~ 122 (761)
++||-|+-|+++..|
T Consensus 93 ~rgI~vIPEID~PGH 107 (326)
T cd06564 93 DRGVNIIPEIDSPGH 107 (326)
T ss_pred HcCCeEeccCCCcHH
Confidence 999999999976544
No 98
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.64 E-value=4.9e+02 Score=27.10 Aligned_cols=86 Identities=8% Similarity=0.012 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCcEEEcCCC------CC-----hhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHH
Q 004315 74 SCMVKDLVLMKQNNINAVRNSHY------PQ-----HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (761)
Q Consensus 74 e~~~~dl~~mK~~g~N~vR~~h~------p~-----~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~ 142 (761)
..+.+.++.++++|+..|=++.. +. ...+-++++++||-|..=.+. +-++. ......++..++.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~-~~~~~----~~~~~~~~~~r~~ 87 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPE-TNGYP----YNMMLGDEHMRRE 87 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCc-ccCcC----ccccCCCHHHHHH
Confidence 35788999999999999987532 11 246788999999988753221 11111 0111234555666
Q ss_pred HHHHHHHHHHHh--CCCceEEEEe
Q 004315 143 MMDRVIGMVERD--KNHASIICWS 164 (761)
Q Consensus 143 ~~~~~~~mV~r~--rNHPSIi~Ws 164 (761)
.++.++++++.- -.=++|++|.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcC
Confidence 666666666432 2344555554
No 99
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.20 E-value=9.1e+02 Score=25.23 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcCCC-----CChh-----------HHHHHHHhcCCEEEeecccccCCccccccCCCCCC
Q 004315 72 IESCMVKDLVLMKQNNINAVRNSHY-----PQHP-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTM 135 (761)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~-----p~~~-----------~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~ 135 (761)
..+.|++-|.++..+|+.+|-.+.| |.++ ...++|.++++++-.|+. +.
T Consensus 94 aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiM------------Dt--- 158 (287)
T COG3623 94 ALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIM------------DT--- 158 (287)
T ss_pred HHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeec------------cc---
Confidence 3688999999999999999999765 2232 257899999999988873 11
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEEE-eCCCCCCCCCcH-HHHHHHHHh-----hCCCCeEeccCCCCCCCCCcee-c
Q 004315 136 EPSWAAAMMDRVIGMVERDKNHASIICW-SLGNEAGHGPNH-SAAAGWIRG-----KDPSRLLHYEGGGSRTPSTDIV-C 207 (761)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNHPSIi~W-slgNE~~~g~~~-~~~~~~ik~-----~DptRpv~~~~~~~~~~~~Di~-~ 207 (761)
.|.... .+.... .+.-+.|=+..+ .+||=+.++.+. .++..-+++ +-.|-+|+-.+.|.. -|+. +
T Consensus 159 --pfm~sI-sk~~~~-~~~I~sP~f~vYPDiGNlsaw~ndv~~El~lG~~~I~aiHlKDTy~vte~~~GqF---rdvpfG 231 (287)
T COG3623 159 --PFMNSI-SKWLKY-DKYINSPWFTVYPDIGNLSAWNNDVQSELQLGIDKIVAIHLKDTYAVTETSPGQF---RDVPFG 231 (287)
T ss_pred --HHHHHH-HHHHHH-HHHhCCCcEEecCCcccHhhhhhhHHHHHHcCcCceEEEEecccccccccCCCcc---ccCCcC
Confidence 122222 233333 335578877777 788887776653 233221111 112445554444321 1110 0
Q ss_pred CCCCchHHHHHHhhCCCCCCCeEeeccccc
Q 004315 208 PMYMRVWDIVMIAKDPTETRPLILCEYSHA 237 (761)
Q Consensus 208 ~~Y~~~~~~~~~~~~~~~~kP~i~~Eygh~ 237 (761)
.--.+...+-..++.....-|+++.-|.+.
T Consensus 232 eG~Vdf~~~f~~lk~~ny~gpfLIEMWse~ 261 (287)
T COG3623 232 EGCVDFEECFKTLKQLNYRGPFLIEMWSET 261 (287)
T ss_pred CcchhHHHHHHHHHHhCCCCceehhhhhhh
Confidence 000112344444554455789998777763
No 100
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.89 E-value=2.1e+02 Score=26.13 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEee
Q 004315 71 NIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDE 116 (761)
Q Consensus 71 ~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e 116 (761)
++.+.+..-++.++++|+..+=+.-...++++.++|.++||-++-.
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 4789999999999999999888755567789999999999999854
No 101
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=21.86 E-value=5.7e+02 Score=22.72 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=40.1
Q ss_pred hcceEEEeecceEEEeccccCCCCCCeEEEEEEE-eCCEEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEE
Q 004315 320 YQAIKVSLKKGTLKISNTNFFETTQGLEFSWVAH-GDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFL 398 (761)
Q Consensus 320 ~~pi~~~~~~~~i~i~N~~~f~~l~~~~l~w~l~-~~g~~v~~g~~~~~~v~p~~s~~i~lp~~~~~~~~~~~~~~e~~L 398 (761)
..|+.+...+..|.|... .++.+++ .++. ..|++|-+..+.. +++....|.|... +.++|.|
T Consensus 27 ~~Pi~a~i~~~~l~I~F~---~~~~~vt--I~I~d~~G~vVy~~~~~~---~~~~~~~I~L~~~---------~~G~Y~l 89 (106)
T PF11589_consen 27 PIPITASIDGNNLSIEFE---SPIGDVT--ITIKDSTGNVVYSETVSN---SAGQSITIDLNGL---------PSGEYTL 89 (106)
T ss_dssp --SEEEEEETTEEEEEES---S--SEEE--EEEEETT--EEEEEEESC---GGTTEEEEE-TTS----------SEEEEE
T ss_pred ccCcEEEEeCCEEEEEEc---CCCCCEE--EEEEeCCCCEEEEEEccC---CCCcEEEEEeCCC---------CCccEEE
Confidence 467777777888887542 3455554 4555 4899998888743 4556788888643 3579999
Q ss_pred EEEE
Q 004315 399 TVTA 402 (761)
Q Consensus 399 ~i~~ 402 (761)
.|+-
T Consensus 90 ~i~~ 93 (106)
T PF11589_consen 90 EITN 93 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8885
No 102
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.47 E-value=1.6e+02 Score=31.86 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcC------------CCCC---------------------hhHHHHHHHhcCCEEEee
Q 004315 70 TNIESCMVKDLVLMKQNNINAVRNS------------HYPQ---------------------HPRWYELCDLFGLYMIDE 116 (761)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~------------h~p~---------------------~~~~~dlcDe~Gi~V~~e 116 (761)
.++.+.+++-|+.|...++|.+-.+ .+|. -.++.+.|.++||-|+-|
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4689999999999999999998662 1221 125889999999999999
Q ss_pred cccccC
Q 004315 117 ANIETH 122 (761)
Q Consensus 117 ~~~~~~ 122 (761)
++...|
T Consensus 92 iD~PGH 97 (303)
T cd02742 92 IDMPGH 97 (303)
T ss_pred ccchHH
Confidence 975544
No 103
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=21.39 E-value=2.8e+02 Score=24.33 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=23.6
Q ss_pred eEEEeccccCCCCCCeEEEEEEE---eCCEEEEEE-E-e-eCCcCCCCCEEEEEecC
Q 004315 331 TLKISNTNFFETTQGLEFSWVAH---GDGYKLGFG-I-L-SLPLIKPHSNYEIELKS 381 (761)
Q Consensus 331 ~i~i~N~~~f~~l~~~~l~w~l~---~~g~~v~~g-~-~-~~~~v~p~~s~~i~lp~ 381 (761)
.+.|.|+.. ....+.|++. .+|-.+... + . .+ .|+|+++..|..-.
T Consensus 29 ~~~l~N~~~----~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~-~l~~~~~~~l~~~a 80 (94)
T PF07233_consen 29 QATLSNKSS----KPLTLQYRFYWYDKQGLEVDPEQSPWQSL-TLPGGQTVTLSAVA 80 (94)
T ss_dssp EEEEEE-SS----S-EEEEEEEEEE-TTS-EE--TT---EEE-EE-TT-EEEEEEE-
T ss_pred EEEEEECCC----CcEEEEEEEEEECCCCCCcCCCCCCCEEE-EEcCCCEEEEEEEC
Confidence 467888875 3455555553 688777544 1 1 33 68888888877643
No 104
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=21.33 E-value=5.2e+02 Score=27.42 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=40.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEE
Q 004315 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMI 114 (761)
Q Consensus 64 ~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~ 114 (761)
-|..++...++.+..-.++||+.|+.+|.+..........+...+.||-|+
T Consensus 83 mPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 83 LPFMSYATPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVV 133 (263)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEE
Confidence 455555435677777889999999999999776555567899999999999
No 105
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.21 E-value=4.7e+02 Score=28.26 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=35.4
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE-------------cCCCCChhHHHHHHHhcCCEEEee
Q 004315 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVR-------------NSHYPQHPRWYELCDLFGLYMIDE 116 (761)
Q Consensus 50 Gk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR-------------~~h~p~~~~~~dlcDe~Gi~V~~e 116 (761)
|++++..|---|- ...+..++++|+..|- .+|..+ +..++.+.+.|+-|+|-
T Consensus 30 ~~~iytlG~iIHN--------------~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~-~~~~~~~~~~g~~viDa 94 (298)
T PRK01045 30 GAPIYVRHEIVHN--------------RYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVS-PAVREEAKERGLTVIDA 94 (298)
T ss_pred CCCeEEEecCccC--------------HHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCC-HHHHHHHHHCCCeEEeC
Confidence 5678887776652 2356667777774442 144443 67889999999999874
Q ss_pred c
Q 004315 117 A 117 (761)
Q Consensus 117 ~ 117 (761)
.
T Consensus 95 T 95 (298)
T PRK01045 95 T 95 (298)
T ss_pred C
Confidence 3
No 106
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.77 E-value=4.5e+02 Score=26.77 Aligned_cols=129 Identities=12% Similarity=0.164 Sum_probs=69.8
Q ss_pred EEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcC-----CCCChhHHHHHHH
Q 004315 33 LVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS-----HYPQHPRWYELCD 107 (761)
Q Consensus 33 ~~GfR~i~~~~~~f~lNGk~v~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~-----h~p~~~~~~dlcD 107 (761)
..|++-||++ =.+.-+|++|.++-.+.-. .+|. +...-.-.+..++++.+..-+.. ..|-=+++++++.
T Consensus 24 ~~G~~~vE~D-v~lTkDg~~Vv~HD~~l~r---~t~~--~~~i~~~t~~el~~l~~~~~~~~~~~~~~iptL~evl~~~~ 97 (233)
T cd08582 24 EQGADGIETD-VRLTKDGELVCVHDPTLKR---TSGG--DGAVSDLTLAELRKLDIGSWKGESYKGEKVPTLEEYLAIVP 97 (233)
T ss_pred HcCCCEEEEE-EEEccCCCEEEecCCcccc---ccCC--CcchhhCCHHHHhcCCCCcccCCCCCCCcCCCHHHHHHHHH
Confidence 3577777773 2344567776665444311 1111 11111222334455555443322 2344567899999
Q ss_pred hcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEeCCCCCCCCCcHHHHHHHHHhhC
Q 004315 108 LFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGPNHSAAAGWIRGKD 186 (761)
Q Consensus 108 e~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r-NHPSIi~WslgNE~~~g~~~~~~~~~ik~~D 186 (761)
++++.+..|+-.. ... ..+.+.+.++++++. ....|++.|.. ......+|+++
T Consensus 98 ~~~~~l~ieiK~~-------------~~~----~~~~~~~~~~~~~~~~~~~~v~~~Sf~---------~~~l~~~~~~~ 151 (233)
T cd08582 98 KYGKKLFIEIKHP-------------RRG----PEAEEELLKLLKESGLLPEQIVIISFD---------AEALKRVRELA 151 (233)
T ss_pred hcCceEEEEeCCC-------------ccC----ccHHHHHHHHHHHcCCCCCCEEEEecC---------HHHHHHHHHHC
Confidence 9899888887310 011 223456677777773 33455555533 24678889999
Q ss_pred CCCeEec
Q 004315 187 PSRLLHY 193 (761)
Q Consensus 187 ptRpv~~ 193 (761)
|.-++.+
T Consensus 152 p~~~~~~ 158 (233)
T cd08582 152 PTLETLW 158 (233)
T ss_pred CCCcEEE
Confidence 9855544
No 107
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.34 E-value=5.3e+02 Score=24.81 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=46.6
Q ss_pred CCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCcH
Q 004315 96 YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNH 175 (761)
Q Consensus 96 ~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~ 175 (761)
.|-=.++++.|.+ ++.+..|+-- +.. .+.+.+.+.++++++....-|+++|..-
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~-------------~~~----~~~~~~~l~~~i~~~~~~~~v~i~s~~~-------- 101 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKE-------------PTR----YPGLEAKVAELLREYGLEERVVVSSFDH-------- 101 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECC-------------CCC----chhHHHHHHHHHHHcCCcCCEEEEeCCH--------
Confidence 3445678888887 8888877631 111 2344566778888887666677776422
Q ss_pred HHHHHHHHhhCCCCeEec
Q 004315 176 SAAAGWIRGKDPSRLLHY 193 (761)
Q Consensus 176 ~~~~~~ik~~DptRpv~~ 193 (761)
.+...+|+.+|.-++.+
T Consensus 102 -~~l~~~~~~~p~~~~~~ 118 (189)
T cd08556 102 -EALRALKELDPEVPTGL 118 (189)
T ss_pred -HHHHHHHHhCCCCcEEE
Confidence 47788899998766544
No 108
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=20.12 E-value=3.3e+02 Score=28.86 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=52.7
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHcCCcEEEcCCCCChhHHHHHHHhcCCEEEeecccccCCccccccCCCCCCCHHHHHH
Q 004315 64 HPRVGK-TNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (761)
Q Consensus 64 ~p~~g~-~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~e~~~~~~g~~~~~~~~~~~~~~~~~~~ 142 (761)
-|..-+ .-+.+.++.-.++||+.|+.+|.+.............-+.||-|+--+.+--.-....+.++--..+++-.+.
T Consensus 84 mPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~ 163 (261)
T PF02548_consen 84 MPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEK 163 (261)
T ss_dssp --TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHHHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHHHHHH
Confidence 354444 3456777888999999999999998777777888999999999997663210000000111222345555666
Q ss_pred HHHHHHHHHH
Q 004315 143 MMDRVIGMVE 152 (761)
Q Consensus 143 ~~~~~~~mV~ 152 (761)
.++.++++-+
T Consensus 164 l~~~A~ale~ 173 (261)
T PF02548_consen 164 LLEDAKALEE 173 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
Done!