Query 004316
Match_columns 761
No_of_seqs 480 out of 2916
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 21:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 4E-153 8E-158 1227.7 54.0 685 67-754 34-721 (721)
2 COG0480 FusA Translation elong 100.0 1E-143 3E-148 1231.3 74.8 684 69-759 7-696 (697)
3 PRK00007 elongation factor G; 100.0 2E-132 4E-137 1170.7 80.1 683 68-755 6-692 (693)
4 PRK12739 elongation factor G; 100.0 5E-132 1E-136 1167.9 79.0 683 68-755 4-689 (691)
5 TIGR00484 EF-G translation elo 100.0 1E-131 3E-136 1165.4 81.0 683 67-755 5-689 (689)
6 PRK13351 elongation factor G; 100.0 1E-127 2E-132 1135.3 80.2 679 68-752 4-686 (687)
7 PRK12740 elongation factor G; 100.0 9E-121 2E-125 1075.3 77.8 665 78-751 1-667 (668)
8 PLN00116 translation elongatio 100.0 9E-119 2E-123 1070.6 63.6 674 67-759 14-828 (843)
9 PTZ00416 elongation factor 2; 100.0 2E-117 5E-122 1056.0 64.5 670 67-759 14-821 (836)
10 TIGR00490 aEF-2 translation el 100.0 4E-114 9E-119 1017.6 60.3 635 68-759 15-716 (720)
11 PRK07560 elongation factor EF- 100.0 3E-113 7E-118 1012.7 59.1 642 68-759 16-718 (731)
12 KOG0464 Elongation factor G [T 100.0 1E-111 2E-116 867.0 32.5 670 69-754 34-749 (753)
13 KOG0469 Elongation factor 2 [T 100.0 8E-104 2E-108 824.6 25.9 670 68-758 15-826 (842)
14 TIGR01394 TypA_BipA GTP-bindin 100.0 1.6E-84 3.5E-89 743.9 51.1 452 72-748 1-477 (594)
15 KOG0468 U5 snRNP-specific prot 100.0 8.8E-86 1.9E-90 708.5 36.6 668 67-751 123-915 (971)
16 PRK10218 GTP-binding protein; 100.0 6.1E-83 1.3E-87 729.0 52.6 452 70-746 3-480 (607)
17 PRK05433 GTP-binding protein L 100.0 1.2E-82 2.5E-87 731.5 52.9 459 69-742 4-481 (600)
18 TIGR01393 lepA GTP-binding pro 100.0 1.3E-81 2.8E-86 722.1 53.8 458 70-742 1-478 (595)
19 PRK00741 prfC peptide chain re 100.0 1.5E-79 3.3E-84 694.5 49.6 450 69-550 7-473 (526)
20 KOG0467 Translation elongation 100.0 1.8E-79 3.8E-84 672.6 37.5 644 67-746 4-832 (887)
21 TIGR00503 prfC peptide chain r 100.0 2.4E-76 5.2E-81 668.6 48.2 449 69-548 8-472 (527)
22 KOG0462 Elongation factor-type 100.0 8.2E-75 1.8E-79 617.5 38.6 464 67-743 55-535 (650)
23 COG0481 LepA Membrane GTPase L 100.0 4.6E-74 9.9E-79 602.1 38.3 461 68-743 5-485 (603)
24 COG1217 TypA Predicted membran 100.0 9.6E-72 2.1E-76 582.8 38.8 453 70-747 3-480 (603)
25 COG4108 PrfC Peptide chain rel 100.0 1.7E-63 3.7E-68 518.9 32.9 448 68-545 8-470 (528)
26 cd01886 EF-G Elongation factor 100.0 1.2E-51 2.6E-56 431.8 31.7 270 74-346 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 2.1E-47 4.5E-52 399.6 30.0 265 71-346 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 7.2E-45 1.6E-49 383.3 31.0 268 74-346 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 7.9E-44 1.7E-48 366.6 27.6 237 74-346 1-237 (237)
30 COG5256 TEF1 Translation elong 100.0 1.9E-36 4.2E-41 318.0 27.0 278 70-458 5-319 (428)
31 CHL00071 tufA elongation facto 100.0 3.8E-36 8.2E-41 334.3 30.2 272 69-455 9-307 (409)
32 PRK12736 elongation factor Tu; 100.0 4.8E-36 1E-40 332.0 30.1 272 69-455 9-297 (394)
33 PTZ00141 elongation factor 1- 100.0 7.4E-36 1.6E-40 333.7 27.5 273 70-455 5-318 (446)
34 PLN00043 elongation factor 1-a 100.0 8.5E-36 1.8E-40 332.9 26.5 273 70-455 5-318 (447)
35 PRK05306 infB translation init 100.0 3.4E-35 7.3E-40 343.1 32.0 309 70-519 288-628 (787)
36 PLN03126 Elongation factor Tu; 100.0 2.7E-35 5.8E-40 329.8 29.8 273 68-455 77-376 (478)
37 TIGR00485 EF-Tu translation el 100.0 7.9E-35 1.7E-39 322.7 30.0 272 69-455 9-297 (394)
38 PRK12735 elongation factor Tu; 100.0 2.4E-34 5.2E-39 318.6 29.7 273 68-455 8-299 (396)
39 PRK00049 elongation factor Tu; 100.0 3.4E-34 7.3E-39 317.2 29.1 273 68-455 8-299 (396)
40 PRK12317 elongation factor 1-a 100.0 2.3E-34 5E-39 322.8 28.0 274 70-456 4-311 (425)
41 PLN03127 Elongation factor Tu; 100.0 1.3E-33 2.8E-38 315.0 29.8 274 67-455 56-350 (447)
42 TIGR02034 CysN sulfate adenyly 100.0 5.4E-34 1.2E-38 316.5 26.7 271 74-456 2-301 (406)
43 TIGR00483 EF-1_alpha translati 100.0 2.1E-33 4.5E-38 314.9 28.1 277 70-456 5-313 (426)
44 PRK05124 cysN sulfate adenylyl 100.0 2.2E-33 4.7E-38 316.1 28.2 276 70-456 25-329 (474)
45 TIGR00487 IF-2 translation ini 100.0 7.5E-33 1.6E-37 317.0 32.8 307 70-519 85-426 (587)
46 PTZ00327 eukaryotic translatio 100.0 5.5E-32 1.2E-36 301.0 26.2 255 69-455 31-351 (460)
47 CHL00189 infB translation init 100.0 1.9E-31 4.1E-36 308.8 27.6 253 69-453 241-500 (742)
48 KOG0460 Mitochondrial translat 100.0 2E-32 4.2E-37 277.7 14.5 267 70-456 52-342 (449)
49 COG0050 TufB GTPases - transla 100.0 2.7E-31 5.9E-36 264.7 20.4 272 69-455 9-297 (394)
50 PRK10512 selenocysteinyl-tRNA- 100.0 8.2E-31 1.8E-35 302.6 26.7 248 74-454 2-259 (614)
51 PRK05506 bifunctional sulfate 100.0 8.1E-31 1.8E-35 307.1 26.7 274 71-456 23-325 (632)
52 PRK04000 translation initiatio 100.0 2.1E-30 4.4E-35 287.9 28.4 256 70-457 7-320 (411)
53 PF00009 GTP_EFTU: Elongation 100.0 1.5E-31 3.3E-36 267.0 15.8 145 70-217 1-147 (188)
54 TIGR03680 eif2g_arch translati 100.0 6.7E-30 1.5E-34 284.0 28.3 254 71-456 3-314 (406)
55 TIGR00475 selB selenocysteine- 100.0 2.8E-29 6.2E-34 289.2 27.1 250 74-453 2-259 (581)
56 KOG0458 Elongation factor 1 al 100.0 3.8E-29 8.3E-34 271.5 23.8 278 67-453 172-488 (603)
57 cd01885 EF2 EF2 (for archaea a 100.0 1.3E-28 2.9E-33 250.1 21.5 128 73-205 1-138 (222)
58 COG2895 CysN GTPases - Sulfate 100.0 1.2E-28 2.6E-33 252.1 18.2 306 71-491 5-341 (431)
59 COG3276 SelB Selenocysteine-sp 100.0 8.8E-28 1.9E-32 254.7 20.0 247 74-455 2-256 (447)
60 KOG0459 Polypeptide release fa 100.0 3E-28 6.6E-33 252.5 12.2 320 68-485 75-431 (501)
61 COG0532 InfB Translation initi 100.0 1.6E-26 3.5E-31 251.6 25.6 252 71-454 4-261 (509)
62 COG5257 GCD11 Translation init 100.0 1.6E-26 3.4E-31 233.6 23.5 304 71-517 9-362 (415)
63 cd01884 EF_Tu EF-Tu subfamily. 99.9 4.8E-27 1E-31 234.8 19.3 127 73-205 3-131 (195)
64 COG5258 GTPBP1 GTPase [General 99.9 5.6E-26 1.2E-30 234.0 22.4 285 69-454 114-436 (527)
65 KOG1145 Mitochondrial translat 99.9 3.7E-26 7.9E-31 245.1 21.8 251 70-452 151-405 (683)
66 PRK04004 translation initiatio 99.9 1.2E-25 2.7E-30 258.4 27.0 302 71-451 5-325 (586)
67 TIGR00491 aIF-2 translation in 99.9 3.3E-24 7.2E-29 245.4 30.0 284 72-451 4-323 (590)
68 cd01883 EF1_alpha Eukaryotic e 99.9 1.4E-25 3.1E-30 229.2 14.2 134 74-207 1-152 (219)
69 cd01890 LepA LepA subfamily. 99.9 1.8E-24 3.9E-29 213.8 21.5 130 73-208 1-135 (179)
70 cd04166 CysN_ATPS CysN_ATPS su 99.9 4.5E-25 9.8E-30 223.8 16.3 134 74-207 1-145 (208)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 3.7E-24 8.1E-29 214.8 20.5 144 71-219 1-144 (194)
72 PF03764 EFG_IV: Elongation fa 99.9 1.2E-24 2.5E-29 200.7 14.1 119 540-661 1-120 (120)
73 cd04167 Snu114p Snu114p subfam 99.9 1.5E-23 3.2E-28 213.6 19.7 131 73-205 1-136 (213)
74 KOG0461 Selenocysteine-specifi 99.9 2E-23 4.3E-28 212.3 17.9 246 73-441 8-268 (522)
75 COG1160 Predicted GTPases [Gen 99.9 9.9E-24 2.1E-28 226.4 14.8 200 34-343 136-350 (444)
76 cd01888 eIF2_gamma eIF2-gamma 99.9 1.6E-23 3.4E-28 211.6 15.4 116 73-206 1-151 (203)
77 cd01684 Tet_like_IV EF-G_domai 99.9 2.1E-23 4.6E-28 189.9 14.6 115 542-661 1-115 (115)
78 cd01889 SelB_euk SelB subfamil 99.9 1.5E-22 3.3E-27 202.8 19.0 119 74-206 2-134 (192)
79 cd04165 GTPBP1_like GTPBP1-lik 99.9 5.8E-22 1.3E-26 202.4 17.1 140 74-221 1-168 (224)
80 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 2.6E-22 5.6E-27 183.7 13.0 116 544-661 1-116 (116)
81 cd01683 EF2_IV_snRNP EF-2_doma 99.9 2.7E-22 5.9E-27 195.9 13.0 129 539-671 1-178 (178)
82 PRK14845 translation initiatio 99.9 1.4E-20 3.1E-25 224.7 27.7 275 85-452 474-781 (1049)
83 cd01680 EFG_like_IV Elongation 99.9 8.3E-22 1.8E-26 180.6 13.4 116 544-661 1-116 (116)
84 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 2.1E-22 4.6E-27 170.8 8.5 78 666-743 1-80 (80)
85 cd00881 GTP_translation_factor 99.9 8.1E-21 1.7E-25 188.8 20.6 142 74-220 1-143 (189)
86 cd01693 mtEFG2_like_IV mtEF-G2 99.9 1.6E-21 3.5E-26 179.6 12.3 118 542-661 1-120 (120)
87 PF00679 EFG_C: Elongation fac 99.9 1.7E-21 3.6E-26 169.3 10.5 88 663-750 1-89 (89)
88 smart00838 EFG_C Elongation fa 99.9 1.1E-21 2.4E-26 169.0 8.1 83 664-746 1-83 (85)
89 cd04171 SelB SelB subfamily. 99.8 5.4E-20 1.2E-24 178.5 17.2 115 74-206 2-118 (164)
90 cd01681 aeEF2_snRNP_like_IV Th 99.8 1.5E-20 3.3E-25 185.0 12.3 128 539-670 1-177 (177)
91 PF14492 EFG_II: Elongation Fa 99.8 6.6E-21 1.4E-25 159.2 8.3 75 465-539 1-75 (75)
92 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 1.2E-20 2.5E-25 159.8 8.8 78 666-743 1-78 (78)
93 cd03711 Tet_C Tet_C: C-terminu 99.8 2.2E-20 4.7E-25 158.1 8.9 78 666-743 1-78 (78)
94 COG1160 Predicted GTPases [Gen 99.8 1.2E-19 2.7E-24 195.0 16.5 113 73-205 4-125 (444)
95 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 3.4E-20 7.3E-25 157.1 8.4 78 666-743 1-78 (78)
96 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-19 4.6E-24 202.7 16.9 150 36-205 133-296 (429)
97 PRK00093 GTP-binding protein D 99.8 4.3E-19 9.3E-24 200.5 17.8 149 37-205 136-297 (435)
98 cd04096 eEF2_snRNP_like_C eEF2 99.8 6E-20 1.3E-24 156.4 8.1 78 666-743 1-80 (80)
99 COG1159 Era GTPase [General fu 99.8 5.7E-19 1.2E-23 180.3 16.0 114 73-206 7-128 (298)
100 PRK03003 GTP-binding protein D 99.8 5.4E-19 1.2E-23 200.7 17.4 151 36-206 172-336 (472)
101 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.4E-19 3E-24 153.5 9.2 77 666-742 1-78 (79)
102 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-18 3.1E-23 169.4 17.8 115 73-208 1-118 (168)
103 PRK09554 feoB ferrous iron tra 99.8 6.9E-19 1.5E-23 207.8 17.2 239 73-343 4-263 (772)
104 cd01514 Elongation_Factor_C El 99.8 2.3E-19 5E-24 152.4 8.4 78 666-743 1-79 (79)
105 KOG0463 GTP-binding protein GP 99.8 6.2E-19 1.3E-23 181.2 12.4 283 74-457 135-458 (641)
106 PRK09518 bifunctional cytidyla 99.8 1.3E-18 2.8E-23 206.7 16.1 151 36-206 409-575 (712)
107 cd03709 lepA_C lepA_C: This fa 99.8 4.7E-19 1E-23 150.4 8.6 77 666-742 1-79 (80)
108 PF02421 FeoB_N: Ferrous iron 99.8 2E-18 4.3E-23 164.4 13.4 108 74-204 2-117 (156)
109 KOG1144 Translation initiation 99.8 2.7E-18 5.8E-23 189.4 15.6 244 73-410 476-738 (1064)
110 TIGR00436 era GTP-binding prot 99.8 7.7E-18 1.7E-22 177.8 18.5 111 74-205 2-120 (270)
111 PRK15494 era GTPase Era; Provi 99.8 1.2E-17 2.5E-22 181.4 18.8 116 70-205 50-173 (339)
112 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.8E-17 3.9E-22 161.6 15.7 117 74-207 1-122 (167)
113 cd01894 EngA1 EngA1 subfamily. 99.7 2.4E-17 5.2E-22 158.5 16.2 111 76-206 1-119 (157)
114 KOG1143 Predicted translation 99.7 2.9E-17 6.3E-22 169.0 17.4 284 73-453 168-489 (591)
115 cd01895 EngA2 EngA2 subfamily. 99.7 7.8E-17 1.7E-21 157.3 17.7 116 72-207 2-128 (174)
116 cd03690 Tet_II Tet_II: This su 99.7 1.4E-17 2.9E-22 143.3 10.7 83 370-453 1-85 (85)
117 TIGR03594 GTPase_EngA ribosome 99.7 5E-17 1.1E-21 183.5 16.8 113 74-206 1-121 (429)
118 cd01864 Rab19 Rab19 subfamily. 99.7 9.6E-17 2.1E-21 156.4 16.4 114 71-205 2-121 (165)
119 PRK03003 GTP-binding protein D 99.7 1E-16 2.2E-21 182.2 18.0 116 70-205 36-159 (472)
120 cd01898 Obg Obg subfamily. Th 99.7 1.8E-16 3.8E-21 155.0 16.9 112 74-206 2-128 (170)
121 cd04157 Arl6 Arl6 subfamily. 99.7 1.5E-16 3.3E-21 154.1 15.9 112 74-207 1-119 (162)
122 PRK00089 era GTPase Era; Revie 99.7 3E-16 6.5E-21 167.8 18.9 114 72-205 5-126 (292)
123 cd04154 Arl2 Arl2 subfamily. 99.7 2.1E-16 4.5E-21 155.5 15.7 112 71-206 13-129 (173)
124 cd04151 Arl1 Arl1 subfamily. 99.7 1.8E-16 3.9E-21 153.4 14.9 110 74-207 1-115 (158)
125 cd04092 mtEFG2_II_like mtEFG2_ 99.7 6.9E-17 1.5E-21 138.6 10.4 81 373-453 1-83 (83)
126 cd04124 RabL2 RabL2 subfamily. 99.7 2E-16 4.3E-21 153.7 14.6 113 74-205 2-117 (161)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.8E-16 6E-21 151.8 15.4 109 74-206 1-114 (158)
128 cd01897 NOG NOG1 is a nucleola 99.7 3.7E-16 8.1E-21 152.5 16.4 113 73-206 1-127 (168)
129 PRK15467 ethanolamine utilizat 99.7 2.3E-16 5E-21 152.8 13.8 101 73-207 2-106 (158)
130 cd01879 FeoB Ferrous iron tran 99.7 2.4E-16 5.1E-21 152.0 13.7 107 77-206 1-115 (158)
131 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.1E-15 2.3E-20 148.4 18.2 111 73-205 3-120 (164)
132 PRK09518 bifunctional cytidyla 99.7 4.6E-16 1E-20 184.9 18.8 117 69-205 272-396 (712)
133 cd04091 mtEFG1_II_like mtEFG1_ 99.7 1.7E-16 3.7E-21 135.4 10.7 81 373-453 1-81 (81)
134 KOG0466 Translation initiation 99.7 7E-17 1.5E-21 162.4 9.1 243 69-440 35-336 (466)
135 COG2229 Predicted GTPase [Gene 99.7 1.1E-15 2.4E-20 145.0 16.1 133 72-215 10-144 (187)
136 cd04113 Rab4 Rab4 subfamily. 99.7 5.4E-16 1.2E-20 150.3 14.5 113 74-205 2-118 (161)
137 PRK04213 GTP-binding protein; 99.7 8.5E-16 1.8E-20 155.0 16.1 124 71-220 8-157 (201)
138 cd04114 Rab30 Rab30 subfamily. 99.7 6.8E-16 1.5E-20 150.8 14.7 115 70-205 5-125 (169)
139 cd04106 Rab23_lke Rab23-like s 99.7 1.2E-15 2.7E-20 147.8 16.4 111 74-205 2-119 (162)
140 cd03689 RF3_II RF3_II: this su 99.7 2.6E-16 5.6E-21 135.1 10.2 79 375-453 1-84 (85)
141 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.2E-15 2.6E-20 150.3 16.4 111 72-206 15-130 (174)
142 PRK00093 GTP-binding protein D 99.7 9.2E-16 2E-20 173.4 17.7 113 73-205 2-122 (435)
143 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 2.9E-16 6.3E-21 134.8 10.2 81 373-453 1-83 (83)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 9.7E-16 2.1E-20 152.3 15.3 113 74-206 5-123 (183)
145 smart00175 RAB Rab subfamily o 99.7 1.6E-15 3.4E-20 147.2 16.2 111 74-205 2-118 (164)
146 cd04149 Arf6 Arf6 subfamily. 99.7 1.2E-15 2.7E-20 149.3 15.3 110 73-206 10-124 (168)
147 cd00879 Sar1 Sar1 subfamily. 99.7 1.1E-15 2.4E-20 152.6 15.1 113 71-207 18-135 (190)
148 cd01860 Rab5_related Rab5-rela 99.7 1.6E-15 3.5E-20 147.1 15.8 113 74-205 3-119 (163)
149 cd01865 Rab3 Rab3 subfamily. 99.7 1.4E-15 2.9E-20 148.4 15.2 114 73-205 2-119 (165)
150 cd04158 ARD1 ARD1 subfamily. 99.7 2.3E-15 4.9E-20 147.6 16.7 109 74-206 1-114 (169)
151 smart00173 RAS Ras subfamily o 99.7 2.8E-15 6.2E-20 145.6 17.1 112 74-205 2-118 (164)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.6E-15 3.5E-20 145.6 15.1 111 74-206 3-121 (157)
153 cd04163 Era Era subfamily. Er 99.7 5.1E-15 1.1E-19 143.1 18.5 113 73-205 4-124 (168)
154 cd01863 Rab18 Rab18 subfamily. 99.7 1.7E-15 3.6E-20 146.8 15.0 113 74-205 2-119 (161)
155 COG0486 ThdF Predicted GTPase 99.7 8.2E-16 1.8E-20 166.2 13.8 114 73-207 218-339 (454)
156 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.8E-15 6.2E-20 151.2 17.0 113 74-205 2-123 (201)
157 cd01861 Rab6 Rab6 subfamily. 99.7 1.9E-15 4E-20 146.4 15.0 111 74-205 2-118 (161)
158 cd01866 Rab2 Rab2 subfamily. 99.6 2.6E-15 5.7E-20 146.8 16.0 115 72-205 4-122 (168)
159 cd01867 Rab8_Rab10_Rab13_like 99.6 2.9E-15 6.3E-20 146.3 16.2 116 71-205 2-121 (167)
160 cd04150 Arf1_5_like Arf1-Arf5- 99.6 3.2E-15 7E-20 145.0 16.2 109 74-206 2-115 (159)
161 cd04138 H_N_K_Ras_like H-Ras/N 99.6 6.8E-15 1.5E-19 142.2 18.4 112 74-205 3-119 (162)
162 smart00177 ARF ARF-like small 99.6 3.5E-15 7.6E-20 147.1 16.7 112 72-207 13-129 (175)
163 cd01862 Rab7 Rab7 subfamily. 99.6 2.9E-15 6.2E-20 146.6 15.7 111 74-205 2-122 (172)
164 smart00178 SAR Sar1p-like memb 99.6 2.3E-15 4.9E-20 149.7 15.0 113 71-207 16-133 (184)
165 cd04120 Rab12 Rab12 subfamily. 99.6 2.9E-15 6.3E-20 150.8 15.7 111 74-205 2-118 (202)
166 cd04119 RJL RJL (RabJ-Like) su 99.6 3.3E-15 7.2E-20 145.3 15.7 113 74-205 2-123 (168)
167 cd04136 Rap_like Rap-like subf 99.6 4.7E-15 1E-19 143.8 16.6 113 73-205 2-119 (163)
168 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 4.4E-15 9.5E-20 144.7 16.3 115 72-205 2-120 (166)
169 cd04175 Rap1 Rap1 subgroup. T 99.6 7.8E-15 1.7E-19 142.7 17.8 110 74-205 3-119 (164)
170 cd01868 Rab11_like Rab11-like. 99.6 5E-15 1.1E-19 144.2 16.4 113 72-205 3-121 (165)
171 TIGR03598 GTPase_YsxC ribosome 99.6 2E-15 4.3E-20 149.4 13.6 116 69-206 15-143 (179)
172 PLN00223 ADP-ribosylation fact 99.6 5.2E-15 1.1E-19 146.7 16.5 112 72-207 17-133 (181)
173 cd00877 Ran Ran (Ras-related n 99.6 3E-15 6.5E-20 146.3 14.3 113 74-205 2-117 (166)
174 cd04122 Rab14 Rab14 subfamily. 99.6 4.8E-15 1E-19 144.6 15.8 114 73-205 3-120 (166)
175 PTZ00369 Ras-like protein; Pro 99.6 5.3E-15 1.2E-19 147.7 16.4 113 73-205 6-123 (189)
176 cd04147 Ras_dva Ras-dva subfam 99.6 4E-15 8.8E-20 149.8 15.6 110 74-205 1-117 (198)
177 cd04139 RalA_RalB RalA/RalB su 99.6 4.2E-15 9E-20 144.1 15.1 112 74-205 2-118 (164)
178 cd04127 Rab27A Rab27a subfamil 99.6 5.5E-15 1.2E-19 146.1 16.2 116 71-205 3-133 (180)
179 KOG1423 Ras-like GTPase ERA [C 99.6 4.1E-15 9E-20 150.6 15.2 118 68-205 68-198 (379)
180 PRK12299 obgE GTPase CgtA; Rev 99.6 5.2E-15 1.1E-19 159.7 17.1 116 70-206 156-285 (335)
181 cd01878 HflX HflX subfamily. 99.6 6.5E-15 1.4E-19 148.9 16.6 116 70-206 39-167 (204)
182 PRK12298 obgE GTPase CgtA; Rev 99.6 5.8E-15 1.2E-19 162.4 17.1 114 71-205 158-288 (390)
183 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5.1E-15 1.1E-19 145.1 14.9 113 72-205 2-122 (170)
184 cd04159 Arl10_like Arl10-like 99.6 8.1E-15 1.7E-19 140.7 16.0 109 75-206 2-115 (159)
185 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 9.7E-15 2.1E-19 142.4 16.5 110 75-207 2-114 (164)
186 cd04112 Rab26 Rab26 subfamily. 99.6 6.2E-15 1.3E-19 147.5 15.4 114 74-205 2-119 (191)
187 cd01893 Miro1 Miro1 subfamily. 99.6 8.4E-15 1.8E-19 143.0 16.0 112 74-206 2-117 (166)
188 PRK00454 engB GTP-binding prot 99.6 8.7E-15 1.9E-19 146.7 16.2 117 67-205 19-148 (196)
189 PRK05291 trmE tRNA modificatio 99.6 3.6E-15 7.7E-20 167.8 14.9 111 73-205 216-334 (449)
190 cd00154 Rab Rab family. Rab G 99.6 8E-15 1.7E-19 140.5 15.3 113 74-205 2-118 (159)
191 cd04176 Rap2 Rap2 subgroup. T 99.6 7.3E-15 1.6E-19 142.6 15.1 112 74-205 3-119 (163)
192 cd04140 ARHI_like ARHI subfami 99.6 7.7E-15 1.7E-19 143.1 15.2 112 74-205 3-121 (165)
193 TIGR00231 small_GTP small GTP- 99.6 2.7E-15 5.9E-20 143.3 11.8 112 73-206 2-122 (161)
194 cd04116 Rab9 Rab9 subfamily. 99.6 7.9E-15 1.7E-19 143.5 15.4 116 71-205 4-127 (170)
195 TIGR02528 EutP ethanolamine ut 99.6 2.6E-15 5.6E-20 142.4 11.5 96 74-205 2-101 (142)
196 COG0218 Predicted GTPase [Gene 99.6 1.3E-14 2.8E-19 141.0 16.4 135 66-222 18-166 (200)
197 cd04142 RRP22 RRP22 subfamily. 99.6 1.2E-14 2.6E-19 146.2 16.7 111 74-205 2-129 (198)
198 TIGR02729 Obg_CgtA Obg family 99.6 1E-14 2.2E-19 157.4 17.2 116 70-206 155-287 (329)
199 cd04156 ARLTS1 ARLTS1 subfamil 99.6 7.7E-15 1.7E-19 142.0 14.6 109 74-206 1-115 (160)
200 cd04155 Arl3 Arl3 subfamily. 99.6 8.2E-15 1.8E-19 143.8 14.7 113 71-207 13-130 (173)
201 PTZ00133 ADP-ribosylation fact 99.6 1.2E-14 2.6E-19 144.2 16.1 111 73-207 18-133 (182)
202 cd04121 Rab40 Rab40 subfamily. 99.6 1.8E-14 4E-19 143.6 17.3 117 70-205 4-123 (189)
203 cd04123 Rab21 Rab21 subfamily. 99.6 1.3E-14 2.7E-19 140.3 15.7 111 74-205 2-118 (162)
204 cd04137 RheB Rheb (Ras Homolog 99.6 1.7E-14 3.7E-19 142.7 16.8 111 73-205 2-119 (180)
205 PLN03118 Rab family protein; P 99.6 9.4E-15 2E-19 148.6 15.2 114 72-205 14-133 (211)
206 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.4E-14 3E-19 141.8 15.7 111 74-208 1-116 (167)
207 TIGR03156 GTP_HflX GTP-binding 99.6 7.6E-15 1.6E-19 159.7 15.3 114 71-205 188-314 (351)
208 PLN03110 Rab GTPase; Provision 99.6 7.9E-15 1.7E-19 149.7 14.5 117 70-205 10-130 (216)
209 cd04110 Rab35 Rab35 subfamily. 99.6 9.4E-15 2E-19 147.2 14.8 114 71-205 5-123 (199)
210 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.2E-14 2.7E-19 162.5 16.8 115 71-206 202-324 (442)
211 cd01881 Obg_like The Obg-like 99.6 1.3E-14 2.7E-19 142.5 14.9 109 77-206 1-134 (176)
212 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.2E-14 2.6E-19 141.2 14.3 115 74-205 2-120 (164)
213 cd04146 RERG_RasL11_like RERG/ 99.6 1.2E-14 2.6E-19 141.6 14.3 112 74-205 1-119 (165)
214 cd04177 RSR1 RSR1 subgroup. R 99.6 2.6E-14 5.6E-19 139.8 16.6 112 74-205 3-119 (168)
215 cd03691 BipA_TypA_II BipA_TypA 99.6 6.1E-15 1.3E-19 127.5 10.5 81 373-453 1-86 (86)
216 cd00880 Era_like Era (E. coli 99.6 2.6E-14 5.6E-19 136.6 16.0 110 77-206 1-118 (163)
217 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 8.7E-15 1.9E-19 143.9 12.8 112 74-205 4-120 (172)
218 cd04144 Ras2 Ras2 subfamily. 99.6 1.9E-14 4.1E-19 143.8 15.3 112 74-205 1-119 (190)
219 PRK12296 obgE GTPase CgtA; Rev 99.6 2.6E-14 5.6E-19 159.8 17.9 115 70-205 157-297 (500)
220 cd04109 Rab28 Rab28 subfamily. 99.6 1.7E-14 3.6E-19 147.2 15.0 111 74-205 2-122 (215)
221 PLN03071 GTP-binding nuclear p 99.6 1.8E-14 3.9E-19 147.3 15.1 116 71-205 12-130 (219)
222 cd04126 Rab20 Rab20 subfamily. 99.6 3.5E-14 7.5E-19 144.7 17.0 109 74-206 2-114 (220)
223 cd00876 Ras Ras family. The R 99.6 3.2E-14 6.9E-19 137.1 15.9 110 74-205 1-117 (160)
224 cd03699 lepA_II lepA_II: This 99.6 7.4E-15 1.6E-19 126.7 9.8 80 373-453 1-86 (86)
225 PRK12297 obgE GTPase CgtA; Rev 99.6 3.6E-14 7.9E-19 156.8 17.7 114 71-205 157-287 (424)
226 cd01882 BMS1 Bms1. Bms1 is an 99.6 6.4E-15 1.4E-19 151.0 10.9 159 70-256 37-211 (225)
227 cd04125 RabA_like RabA-like su 99.6 2E-14 4.3E-19 143.4 13.9 113 74-205 2-118 (188)
228 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 4.8E-14 1E-18 138.3 16.4 113 74-205 2-119 (170)
229 cd04143 Rhes_like Rhes_like su 99.6 3.9E-14 8.4E-19 147.1 16.5 112 74-205 2-126 (247)
230 cd04118 Rab24 Rab24 subfamily. 99.6 4.1E-14 8.8E-19 141.7 15.8 114 74-205 2-118 (193)
231 PRK11058 GTPase HflX; Provisio 99.6 3.4E-14 7.5E-19 158.1 15.9 114 71-205 196-322 (426)
232 cd01874 Cdc42 Cdc42 subfamily. 99.6 7.1E-14 1.5E-18 137.8 16.1 112 73-206 2-119 (175)
233 cd04135 Tc10 TC10 subfamily. 99.6 5.9E-14 1.3E-18 137.8 15.0 113 74-206 2-118 (174)
234 PLN03108 Rab family protein; P 99.6 8E-14 1.7E-18 141.6 16.3 116 71-205 5-124 (210)
235 smart00176 RAN Ran (Ras-relate 99.6 4.3E-14 9.3E-19 142.1 14.1 109 78-205 1-112 (200)
236 cd04134 Rho3 Rho3 subfamily. 99.6 6.4E-14 1.4E-18 140.0 15.1 115 73-207 1-119 (189)
237 KOG0084 GTPase Rab1/YPT1, smal 99.5 8.6E-14 1.9E-18 133.2 14.7 115 70-205 7-127 (205)
238 KOG0092 GTPase Rab5/YPT51 and 99.5 2.6E-14 5.6E-19 136.3 11.0 115 73-206 6-124 (200)
239 cd01892 Miro2 Miro2 subfamily. 99.5 7.2E-14 1.6E-18 136.9 14.6 118 70-205 2-121 (169)
240 cd00157 Rho Rho (Ras homology) 99.5 6.3E-14 1.4E-18 137.0 14.1 114 74-207 2-119 (171)
241 cd04132 Rho4_like Rho4-like su 99.5 7.5E-14 1.6E-18 139.0 14.7 112 74-205 2-118 (187)
242 cd04117 Rab15 Rab15 subfamily. 99.5 1.9E-13 4E-18 132.8 17.1 111 74-205 2-118 (161)
243 cd04128 Spg1 Spg1p. Spg1p (se 99.5 1E-13 2.3E-18 137.5 15.3 112 74-205 2-117 (182)
244 cd01875 RhoG RhoG subfamily. 99.5 1.3E-13 2.8E-18 138.0 15.4 114 73-206 4-121 (191)
245 cd01871 Rac1_like Rac1-like su 99.5 1.6E-13 3.5E-18 135.2 15.7 113 74-206 3-119 (174)
246 PF00025 Arf: ADP-ribosylation 99.5 9.2E-14 2E-18 137.0 13.7 115 70-208 12-131 (175)
247 COG0370 FeoB Fe2+ transport sy 99.5 1.1E-13 2.3E-18 155.9 15.6 108 74-204 5-120 (653)
248 TIGR00437 feoB ferrous iron tr 99.5 6.9E-14 1.5E-18 162.0 14.3 104 79-205 1-112 (591)
249 cd01870 RhoA_like RhoA-like su 99.5 1.3E-13 2.9E-18 135.4 14.3 114 73-206 2-119 (175)
250 cd04133 Rop_like Rop subfamily 99.5 1.8E-13 3.9E-18 134.9 15.0 113 73-205 2-118 (176)
251 cd03700 eEF2_snRNP_like_II EF2 99.5 4.3E-14 9.4E-19 123.9 9.3 80 373-452 1-92 (93)
252 cd04111 Rab39 Rab39 subfamily. 99.5 2.4E-13 5.2E-18 138.2 16.1 112 73-205 3-122 (211)
253 smart00174 RHO Rho (Ras homolo 99.5 2.5E-13 5.3E-18 133.4 14.2 111 75-205 1-115 (174)
254 cd04148 RGK RGK subfamily. Th 99.5 2.5E-13 5.4E-18 139.1 14.4 112 74-205 2-119 (221)
255 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.5E-13 7.7E-18 132.4 14.8 112 74-205 2-117 (173)
256 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 6.5E-13 1.4E-17 131.7 15.8 114 72-205 5-122 (182)
257 KOG0078 GTP-binding protein SE 99.5 8.4E-13 1.8E-17 128.4 16.1 120 68-206 8-131 (207)
258 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 6.5E-13 1.4E-17 126.6 14.8 116 72-206 22-142 (221)
259 PF10662 PduV-EutP: Ethanolami 99.5 2E-13 4.3E-18 127.2 11.1 97 73-205 2-102 (143)
260 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 2.1E-13 4.6E-18 119.7 10.3 77 373-449 1-89 (94)
261 cd01876 YihA_EngB The YihA (En 99.5 1.3E-12 2.7E-17 126.7 16.6 109 75-205 2-123 (170)
262 cd00882 Ras_like_GTPase Ras-li 99.5 3.9E-13 8.4E-18 126.8 12.6 111 77-206 1-116 (157)
263 PF01926 MMR_HSR1: 50S ribosom 99.5 6.4E-13 1.4E-17 121.6 13.4 107 74-201 1-116 (116)
264 cd04131 Rnd Rnd subfamily. Th 99.5 8.2E-13 1.8E-17 130.6 14.9 112 74-205 3-118 (178)
265 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 1E-12 2.2E-17 134.7 16.1 113 73-205 14-130 (232)
266 cd04105 SR_beta Signal recogni 99.4 8.8E-13 1.9E-17 133.2 13.4 116 73-210 1-127 (203)
267 cd01896 DRG The developmentall 99.4 2E-12 4.4E-17 133.2 16.2 131 74-227 2-155 (233)
268 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 3E-12 6.4E-17 130.6 15.9 114 73-206 2-119 (222)
269 PTZ00132 GTP-binding nuclear p 99.4 3.6E-12 7.7E-17 130.0 16.4 115 72-205 9-126 (215)
270 cd04103 Centaurin_gamma Centau 99.4 2.9E-12 6.3E-17 124.1 13.8 103 74-204 2-111 (158)
271 KOG0073 GTP-binding ADP-ribosy 99.4 9.3E-12 2E-16 115.4 15.2 110 74-207 18-132 (185)
272 cd01873 RhoBTB RhoBTB subfamil 99.4 5.4E-12 1.2E-16 126.5 14.9 67 138-206 64-134 (195)
273 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 8E-12 1.7E-16 125.5 15.5 114 73-206 1-130 (196)
274 KOG0080 GTPase Rab18, small G 99.4 1.8E-12 3.9E-17 119.2 9.4 115 72-205 11-130 (209)
275 cd04129 Rho2 Rho2 subfamily. 99.4 7.3E-12 1.6E-16 124.9 14.2 111 73-205 2-118 (187)
276 PF00071 Ras: Ras family; Int 99.4 8E-12 1.7E-16 121.0 14.1 113 74-205 1-117 (162)
277 KOG0394 Ras-related GTPase [Ge 99.4 3.6E-12 7.9E-17 120.3 11.0 118 70-206 7-132 (210)
278 KOG0098 GTPase Rab2, small G p 99.4 4.2E-12 9E-17 120.1 10.6 115 72-205 6-124 (216)
279 KOG1191 Mitochondrial GTPase [ 99.3 5.9E-12 1.3E-16 135.8 12.5 113 70-202 266-387 (531)
280 PRK09866 hypothetical protein; 99.3 2.1E-11 4.6E-16 136.7 17.0 66 140-205 230-302 (741)
281 KOG0093 GTPase Rab3, small G p 99.3 1.5E-11 3.3E-16 111.5 12.6 117 71-206 20-140 (193)
282 KOG1489 Predicted GTP-binding 99.3 2.1E-11 4.6E-16 124.9 14.3 115 70-205 194-325 (366)
283 COG3596 Predicted GTPase [Gene 99.3 3E-11 6.5E-16 122.2 15.1 116 70-205 37-161 (296)
284 COG2262 HflX GTPases [General 99.3 1.4E-11 3E-16 131.2 12.5 115 70-205 190-317 (411)
285 KOG0087 GTPase Rab11/YPT3, sma 99.3 1E-11 2.2E-16 120.3 10.3 118 69-205 11-132 (222)
286 cd04104 p47_IIGP_like p47 (47- 99.3 1.4E-11 3.1E-16 123.8 11.8 113 73-205 2-120 (197)
287 KOG0075 GTP-binding ADP-ribosy 99.3 1.6E-11 3.6E-16 111.4 10.3 111 74-207 22-137 (186)
288 PF09439 SRPRB: Signal recogni 99.3 2.1E-11 4.6E-16 118.9 10.7 115 72-212 3-132 (181)
289 cd04102 RabL3 RabL3 (Rab-like3 99.3 6.9E-11 1.5E-15 118.9 14.4 114 74-206 2-143 (202)
290 PRK13768 GTPase; Provisional 99.3 6.7E-11 1.5E-15 123.4 14.4 69 139-207 96-177 (253)
291 KOG0070 GTP-binding ADP-ribosy 99.3 3.2E-11 6.9E-16 115.1 10.5 112 73-208 18-134 (181)
292 PRK09435 membrane ATPase/prote 99.2 4.1E-11 8.8E-16 128.4 12.5 129 70-207 54-209 (332)
293 COG1084 Predicted GTPase [Gene 99.2 7.9E-11 1.7E-15 121.9 13.5 114 71-206 167-294 (346)
294 PF08477 Miro: Miro-like prote 99.2 2.1E-11 4.6E-16 111.8 8.3 113 74-203 1-119 (119)
295 KOG0086 GTPase Rab4, small G p 99.2 8.2E-11 1.8E-15 107.3 11.7 118 70-206 7-128 (214)
296 KOG0095 GTPase Rab30, small G 99.2 8.5E-11 1.8E-15 106.7 11.3 113 70-205 5-125 (213)
297 PLN00023 GTP-binding protein; 99.2 1.2E-10 2.7E-15 122.9 14.1 117 71-206 20-165 (334)
298 KOG0079 GTP-binding protein H- 99.2 1E-10 2.2E-15 106.2 10.2 117 71-206 7-126 (198)
299 cd01899 Ygr210 Ygr210 subfamil 99.2 4.5E-10 9.7E-15 120.4 16.2 29 317-345 241-270 (318)
300 COG1100 GTPase SAR1 and relate 99.1 7E-10 1.5E-14 113.2 15.4 114 73-207 6-126 (219)
301 cd01850 CDC_Septin CDC/Septin. 99.1 4.5E-10 9.8E-15 118.6 13.4 136 73-220 5-172 (276)
302 KOG0076 GTP-binding ADP-ribosy 99.1 1.7E-10 3.6E-15 108.2 8.9 119 73-207 18-141 (197)
303 COG1163 DRG Predicted GTPase [ 99.1 2.6E-10 5.6E-15 117.6 10.7 203 73-344 64-289 (365)
304 COG0536 Obg Predicted GTPase [ 99.1 1.3E-09 2.8E-14 113.5 14.6 114 71-205 158-288 (369)
305 PTZ00099 rab6; Provisional 99.1 4.8E-10 1E-14 110.6 10.3 69 137-205 26-98 (176)
306 KOG0088 GTPase Rab21, small G 99.1 2.4E-10 5.2E-15 105.0 7.2 114 73-205 14-131 (218)
307 TIGR00073 hypB hydrogenase acc 99.1 1.4E-09 3E-14 110.3 13.1 128 69-206 19-162 (207)
308 KOG0090 Signal recognition par 99.1 1.8E-09 4E-14 104.9 13.1 119 73-215 39-168 (238)
309 PF03308 ArgK: ArgK protein; 99.0 4.8E-10 1E-14 113.7 7.5 138 71-219 28-192 (266)
310 PRK09602 translation-associate 99.0 4.6E-09 9.9E-14 116.1 15.9 29 317-345 243-272 (396)
311 PF03029 ATP_bind_1: Conserved 99.0 5.4E-10 1.2E-14 115.1 8.0 66 141-206 92-170 (238)
312 KOG0395 Ras-related GTPase [Ge 99.0 3.2E-09 6.9E-14 106.1 13.2 115 72-206 3-122 (196)
313 KOG1532 GTPase XAB1, interacts 99.0 2.1E-09 4.6E-14 107.9 9.5 70 140-209 116-198 (366)
314 KOG0072 GTP-binding ADP-ribosy 99.0 1.5E-09 3.3E-14 98.4 7.2 110 74-207 20-134 (182)
315 PF03144 GTP_EFTU_D2: Elongati 98.9 5.9E-10 1.3E-14 93.3 3.9 67 386-452 1-74 (74)
316 KOG0071 GTP-binding ADP-ribosy 98.9 1.2E-08 2.5E-13 92.4 12.0 111 74-208 19-134 (180)
317 cd01853 Toc34_like Toc34-like 98.9 2.2E-08 4.8E-13 103.9 15.5 116 70-205 29-162 (249)
318 COG4917 EutP Ethanolamine util 98.9 3.3E-09 7.2E-14 94.2 7.7 98 73-205 2-103 (148)
319 TIGR00750 lao LAO/AO transport 98.9 3.7E-08 8E-13 105.6 17.2 131 70-207 32-187 (300)
320 smart00053 DYNc Dynamin, GTPas 98.9 1.4E-08 3.1E-13 104.2 13.2 138 71-208 25-208 (240)
321 KOG0083 GTPase Rab26/Rab37, sm 98.9 1.2E-09 2.6E-14 97.5 3.7 111 77-205 2-116 (192)
322 KOG0052 Translation elongation 98.9 5.1E-10 1.1E-14 118.7 1.1 133 71-206 6-156 (391)
323 COG1703 ArgK Putative periplas 98.9 1.2E-08 2.7E-13 104.7 10.5 141 71-220 50-215 (323)
324 KOG4252 GTP-binding protein [S 98.8 2.6E-09 5.7E-14 100.2 4.6 120 67-205 15-137 (246)
325 TIGR02836 spore_IV_A stage IV 98.8 7E-08 1.5E-12 103.7 14.9 152 70-226 15-214 (492)
326 KOG0097 GTPase Rab14, small G 98.8 3.2E-08 7E-13 89.2 10.5 120 67-205 6-129 (215)
327 PTZ00258 GTP-binding protein; 98.8 2.8E-07 6E-12 100.9 19.7 82 72-174 21-126 (390)
328 PRK09601 GTP-binding protein Y 98.8 3.6E-07 7.7E-12 98.9 20.3 80 74-174 4-107 (364)
329 TIGR00101 ureG urease accessor 98.8 9.8E-08 2.1E-12 95.9 14.6 59 139-206 91-151 (199)
330 KOG0081 GTPase Rab27, small G 98.8 1.6E-08 3.5E-13 93.2 8.0 67 140-206 67-138 (219)
331 KOG0091 GTPase Rab39, small G 98.8 4.3E-08 9.3E-13 91.0 10.7 113 74-205 10-129 (213)
332 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 7.2E-08 1.6E-12 98.4 13.0 127 74-220 1-140 (232)
333 KOG0074 GTP-binding ADP-ribosy 98.8 5.3E-08 1.1E-12 88.2 10.4 111 73-207 18-134 (185)
334 PF00350 Dynamin_N: Dynamin fa 98.7 2.9E-08 6.3E-13 96.8 8.3 64 139-202 100-168 (168)
335 cd01342 Translation_Factor_II_ 98.7 1.3E-07 2.7E-12 79.8 9.1 76 373-452 1-82 (83)
336 PRK10463 hydrogenase nickel in 98.7 3E-07 6.5E-12 96.3 13.7 124 69-205 101-243 (290)
337 TIGR00991 3a0901s02IAP34 GTP-b 98.7 5.4E-07 1.2E-11 95.0 15.5 115 71-205 37-166 (313)
338 cd03693 EF1_alpha_II EF1_alpha 98.6 1.6E-07 3.4E-12 81.9 9.5 82 370-455 2-89 (91)
339 cd03698 eRF3_II_like eRF3_II_l 98.6 2.6E-07 5.6E-12 79.1 9.3 78 372-453 1-83 (83)
340 PF05049 IIGP: Interferon-indu 98.6 4.6E-07 1E-11 98.1 13.3 113 71-204 34-153 (376)
341 COG0378 HypB Ni2+-binding GTPa 98.6 1.1E-06 2.3E-11 85.4 13.5 122 72-205 13-155 (202)
342 KOG0077 Vesicle coat complex C 98.6 2.9E-07 6.3E-12 86.1 9.1 116 71-210 19-139 (193)
343 cd01900 YchF YchF subfamily. 98.5 2.6E-07 5.6E-12 96.9 8.2 80 75-175 1-104 (274)
344 cd01859 MJ1464 MJ1464. This f 98.5 5.1E-07 1.1E-11 87.1 9.2 51 155-205 4-54 (156)
345 COG5192 BMS1 GTP-binding prote 98.5 1E-06 2.3E-11 96.0 12.1 122 72-222 69-191 (1077)
346 PF04548 AIG1: AIG1 family; I 98.5 2.9E-06 6.2E-11 86.3 14.3 115 73-207 1-131 (212)
347 cd04089 eRF3_II eRF3_II: domai 98.4 1.5E-06 3.2E-11 74.2 9.1 77 372-453 1-82 (82)
348 KOG2486 Predicted GTPase [Gene 98.4 1.9E-06 4.1E-11 87.6 10.3 114 70-205 134-261 (320)
349 KOG0410 Predicted GTP binding 98.3 4E-06 8.8E-11 86.7 11.6 114 71-204 177-306 (410)
350 KOG0393 Ras-related small GTPa 98.3 1.4E-06 3E-11 85.7 7.6 113 72-205 4-122 (198)
351 cd01858 NGP_1 NGP-1. Autoanti 98.3 3.6E-06 7.8E-11 81.3 9.5 49 157-205 2-52 (157)
352 KOG1490 GTP-binding protein CR 98.2 3E-06 6.6E-11 92.1 9.0 114 71-206 167-295 (620)
353 TIGR00993 3a0901s04IAP86 chlor 98.2 1.8E-05 4E-10 90.1 15.5 117 70-206 116-250 (763)
354 KOG3883 Ras family small GTPas 98.2 3.5E-05 7.7E-10 71.2 14.2 114 71-205 8-131 (198)
355 TIGR01425 SRP54_euk signal rec 98.2 5.4E-05 1.2E-09 84.0 18.3 131 71-205 99-252 (429)
356 PRK14722 flhF flagellar biosyn 98.2 6.1E-06 1.3E-10 90.0 10.6 130 71-205 136-294 (374)
357 COG0012 Predicted GTPase, prob 98.2 9.8E-05 2.1E-09 79.0 18.5 97 74-175 4-109 (372)
358 KOG1673 Ras GTPases [General f 98.2 1.2E-05 2.6E-10 74.4 10.0 113 73-204 21-136 (205)
359 cd03696 selB_II selB_II: this 98.2 9.3E-06 2E-10 69.5 8.7 77 373-453 1-83 (83)
360 KOG1486 GTP-binding protein DR 98.2 6.8E-06 1.5E-10 81.9 8.8 82 74-176 64-152 (364)
361 PF00735 Septin: Septin; Inte 98.2 1.2E-05 2.6E-10 85.0 11.3 137 73-221 5-172 (281)
362 cd03110 Fer4_NifH_child This p 98.2 3.9E-05 8.4E-10 75.8 14.3 82 138-222 91-172 (179)
363 COG5019 CDC3 Septin family pro 98.2 3.6E-05 7.9E-10 81.7 14.5 149 72-232 23-203 (373)
364 cd01856 YlqF YlqF. Proteins o 98.1 6.3E-06 1.4E-10 80.9 8.0 57 147-205 2-59 (171)
365 cd03694 GTPBP_II Domain II of 98.1 1.6E-05 3.4E-10 68.7 9.3 76 374-453 2-87 (87)
366 KOG1954 Endocytosis/signaling 98.1 1.4E-05 3.1E-10 83.7 10.1 151 71-221 57-241 (532)
367 cd03695 CysN_NodQ_II CysN_NodQ 98.1 1.8E-05 4E-10 67.3 9.0 76 374-453 2-81 (81)
368 TIGR03596 GTPase_YlqF ribosome 98.1 8.2E-06 1.8E-10 86.5 8.3 57 147-205 4-61 (276)
369 cd03697 EFTU_II EFTU_II: Elong 98.1 1.4E-05 2.9E-10 69.1 8.1 77 374-454 2-86 (87)
370 cd01855 YqeH YqeH. YqeH is an 98.1 1.1E-05 2.3E-10 80.6 8.6 54 150-205 21-74 (190)
371 cd03115 SRP The signal recogni 98.0 3E-05 6.5E-10 76.1 10.4 67 138-206 81-153 (173)
372 cd03114 ArgK-like The function 98.0 2.8E-05 6E-10 74.3 9.2 59 138-203 90-148 (148)
373 cd01849 YlqF_related_GTPase Yl 98.0 2.7E-05 5.9E-10 75.0 9.1 41 165-205 1-42 (155)
374 KOG3886 GTP-binding protein [S 98.0 1.5E-05 3.2E-10 78.9 6.8 125 71-215 3-139 (295)
375 PRK00771 signal recognition pa 98.0 0.00034 7.3E-09 78.3 18.4 131 70-205 93-245 (437)
376 KOG0448 Mitofusin 1 GTPase, in 97.9 6.5E-05 1.4E-09 85.0 12.3 147 70-219 107-287 (749)
377 cd02036 MinD Bacterial cell di 97.9 0.00025 5.5E-09 69.6 15.0 83 141-225 64-147 (179)
378 KOG1707 Predicted Ras related/ 97.9 3E-05 6.5E-10 86.3 8.8 115 71-207 9-130 (625)
379 cd03112 CobW_like The function 97.9 7.9E-05 1.7E-09 72.1 10.8 63 139-204 86-158 (158)
380 TIGR03597 GTPase_YqeH ribosome 97.9 1.1E-05 2.5E-10 88.6 5.5 131 73-222 155-297 (360)
381 KOG0096 GTPase Ran/TC4/GSP1 (n 97.9 1.5E-05 3.2E-10 76.5 5.3 116 71-205 9-127 (216)
382 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.7E-05 5.9E-10 83.0 8.0 57 147-205 7-64 (287)
383 cd01858 NGP_1 NGP-1. Autoanti 97.9 1.9E-05 4.2E-10 76.2 5.9 56 72-150 102-157 (157)
384 TIGR00064 ftsY signal recognit 97.9 0.0002 4.4E-09 75.5 13.6 133 70-205 70-230 (272)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 7.5E-05 1.6E-09 70.7 9.4 51 155-205 3-55 (141)
386 cd01855 YqeH YqeH. YqeH is an 97.8 2E-05 4.4E-10 78.6 5.4 63 73-150 128-190 (190)
387 PRK10416 signal recognition pa 97.8 0.00015 3.3E-09 78.0 12.4 129 71-205 113-272 (318)
388 PF03193 DUF258: Protein of un 97.8 1.2E-05 2.6E-10 77.1 3.2 66 73-154 36-101 (161)
389 KOG1547 Septin CDC10 and relat 97.8 0.00032 6.9E-09 69.9 12.9 140 72-224 46-217 (336)
390 KOG2655 Septin family protein 97.8 0.00034 7.4E-09 75.1 14.0 142 73-227 22-194 (366)
391 PRK10867 signal recognition pa 97.8 0.00079 1.7E-08 75.2 17.5 210 71-316 99-344 (433)
392 cd04178 Nucleostemin_like Nucl 97.8 3.2E-05 7E-10 75.8 5.8 56 72-150 117-172 (172)
393 cd01849 YlqF_related_GTPase Yl 97.8 3.8E-05 8.2E-10 74.0 5.8 57 71-150 99-155 (155)
394 TIGR00959 ffh signal recogniti 97.7 0.0013 2.9E-08 73.4 18.1 146 71-223 98-268 (428)
395 PRK12289 GTPase RsgA; Reviewed 97.7 4.7E-05 1E-09 83.0 5.5 65 74-154 174-238 (352)
396 PRK14974 cell division protein 97.7 0.00026 5.6E-09 76.6 10.9 130 71-205 139-292 (336)
397 PRK12289 GTPase RsgA; Reviewed 97.7 0.00016 3.4E-09 78.9 9.3 46 160-205 86-133 (352)
398 PRK12288 GTPase RsgA; Reviewed 97.6 6.1E-05 1.3E-09 82.1 5.7 65 74-154 207-271 (347)
399 TIGR00157 ribosome small subun 97.6 0.00013 2.8E-09 75.9 7.8 48 158-205 31-80 (245)
400 COG1162 Predicted GTPases [Gen 97.6 5.6E-05 1.2E-09 79.1 5.0 66 73-154 165-230 (301)
401 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 7.9E-05 1.7E-09 70.6 5.5 21 74-94 85-105 (141)
402 cd03692 mtIF2_IVc mtIF2_IVc: t 97.6 0.00039 8.4E-09 59.6 9.2 72 376-451 4-82 (84)
403 PF00448 SRP54: SRP54-type pro 97.6 0.00054 1.2E-08 68.6 11.7 131 73-205 2-153 (196)
404 PRK12727 flagellar biosynthesi 97.6 0.00052 1.1E-08 77.5 12.5 133 71-205 349-497 (559)
405 TIGR00092 GTP-binding protein 97.6 0.00021 4.5E-09 77.7 8.9 82 73-175 3-109 (368)
406 TIGR00157 ribosome small subun 97.6 0.00012 2.5E-09 76.2 6.5 64 73-153 121-184 (245)
407 PRK13796 GTPase YqeH; Provisio 97.6 0.00011 2.4E-09 81.0 6.6 61 73-151 161-221 (365)
408 cd01851 GBP Guanylate-binding 97.5 0.00036 7.7E-09 71.6 8.9 91 70-175 5-103 (224)
409 PRK11889 flhF flagellar biosyn 97.5 0.00036 7.7E-09 76.0 9.0 132 71-205 240-390 (436)
410 PRK12726 flagellar biosynthesi 97.5 0.00024 5.2E-09 77.0 7.6 132 70-205 204-355 (407)
411 COG0523 Putative GTPases (G3E 97.5 0.0015 3.2E-08 70.3 13.4 141 73-221 2-174 (323)
412 cd01856 YlqF YlqF. Proteins o 97.5 0.00021 4.6E-09 70.0 6.3 57 71-150 114-170 (171)
413 KOG1487 GTP-binding protein DR 97.5 0.00017 3.7E-09 72.6 5.5 113 74-209 61-186 (358)
414 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00033 7.2E-09 74.6 8.2 45 161-205 76-122 (287)
415 TIGR03596 GTPase_YlqF ribosome 97.4 0.00027 5.8E-09 74.9 7.3 56 72-150 118-173 (276)
416 PRK00098 GTPase RsgA; Reviewed 97.4 0.00035 7.6E-09 74.9 8.1 46 160-205 77-124 (298)
417 cd00066 G-alpha G protein alph 97.4 0.0014 3.1E-08 70.9 12.7 80 126-205 147-241 (317)
418 cd02038 FleN-like FleN is a me 97.4 0.0017 3.7E-08 61.3 11.0 63 140-204 45-109 (139)
419 PRK14721 flhF flagellar biosyn 97.4 0.00098 2.1E-08 74.1 10.8 131 71-205 190-339 (420)
420 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.00026 5.7E-09 75.4 6.1 57 72-151 121-177 (287)
421 KOG2485 Conserved ATP/GTP bind 97.4 0.00044 9.5E-09 72.0 7.4 100 73-188 144-244 (335)
422 smart00275 G_alpha G protein a 97.4 0.0025 5.4E-08 69.6 13.8 81 125-205 169-264 (342)
423 KOG4423 GTP-binding protein-li 97.3 3.2E-05 6.9E-10 73.9 -1.2 115 70-205 23-148 (229)
424 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00031 6.7E-09 74.9 6.2 66 73-154 162-227 (287)
425 TIGR03597 GTPase_YqeH ribosome 97.3 0.00079 1.7E-08 74.1 9.5 53 151-205 51-103 (360)
426 COG1161 Predicted GTPases [Gen 97.3 0.00026 5.7E-09 76.5 5.6 56 73-151 133-188 (322)
427 COG3640 CooC CO dehydrogenase 97.3 0.00092 2E-08 67.0 8.9 63 140-205 134-198 (255)
428 COG0541 Ffh Signal recognition 97.3 0.017 3.7E-07 63.3 18.7 214 71-316 99-343 (451)
429 PRK05703 flhF flagellar biosyn 97.2 0.0014 3E-08 73.6 10.0 132 72-205 221-370 (424)
430 PRK12724 flagellar biosynthesi 97.2 0.0013 2.8E-08 72.6 9.4 130 73-205 224-372 (432)
431 PRK13849 putative crown gall t 97.2 0.002 4.4E-08 66.3 10.3 64 138-203 82-151 (231)
432 PRK00098 GTPase RsgA; Reviewed 97.2 0.00062 1.3E-08 73.0 6.2 22 73-94 165-186 (298)
433 cd02042 ParA ParA and ParB of 97.2 0.0022 4.8E-08 57.0 8.8 82 75-186 2-84 (104)
434 PRK11537 putative GTP-binding 97.2 0.0025 5.4E-08 68.8 10.8 132 71-207 3-165 (318)
435 cd02037 MRP-like MRP (Multiple 97.1 0.0013 2.7E-08 64.4 7.5 65 138-204 66-133 (169)
436 PRK01889 GTPase RsgA; Reviewed 97.1 0.0023 5E-08 70.3 10.3 45 161-205 110-155 (356)
437 KOG1534 Putative transcription 97.1 0.0038 8.3E-08 61.3 10.5 67 140-206 98-178 (273)
438 TIGR02475 CobW cobalamin biosy 97.1 0.0059 1.3E-07 66.6 12.9 25 71-95 3-27 (341)
439 cd02117 NifH_like This family 97.1 0.0058 1.3E-07 62.1 12.2 87 137-226 114-207 (212)
440 PRK12723 flagellar biosynthesi 97.1 0.0029 6.2E-08 69.9 10.3 133 71-205 173-325 (388)
441 cd01859 MJ1464 MJ1464. This f 97.0 0.00095 2.1E-08 64.2 5.7 24 71-94 100-123 (156)
442 PRK06995 flhF flagellar biosyn 97.0 0.0031 6.8E-08 71.2 10.5 131 72-205 256-404 (484)
443 cd03111 CpaE_like This protein 97.0 0.0041 8.9E-08 55.8 9.2 59 141-201 44-106 (106)
444 PRK12288 GTPase RsgA; Reviewed 97.0 0.0036 7.9E-08 68.3 10.3 45 161-205 118-163 (347)
445 PHA02518 ParA-like protein; Pr 97.0 0.009 2E-07 60.3 12.6 65 138-204 75-145 (211)
446 PF02492 cobW: CobW/HypB/UreG, 97.0 0.0023 5E-08 63.2 8.0 68 139-208 84-157 (178)
447 PRK13796 GTPase YqeH; Provisio 97.0 0.0036 7.8E-08 69.0 10.3 51 152-205 58-109 (365)
448 TIGR03371 cellulose_yhjQ cellu 97.0 0.0098 2.1E-07 61.7 13.0 82 140-223 115-199 (246)
449 PRK08099 bifunctional DNA-bind 96.9 0.005 1.1E-07 68.6 10.8 31 69-99 216-246 (399)
450 KOG0447 Dynamin-like GTP bindi 96.9 0.0069 1.5E-07 66.9 11.2 138 69-207 305-494 (980)
451 KOG1491 Predicted GTP-binding 96.9 0.0026 5.7E-08 66.9 7.6 83 72-175 20-126 (391)
452 PF09547 Spore_IV_A: Stage IV 96.9 0.0051 1.1E-07 66.9 10.0 150 74-228 19-216 (492)
453 PRK14723 flhF flagellar biosyn 96.9 0.0035 7.7E-08 74.1 9.4 130 73-205 186-336 (767)
454 PRK06731 flhF flagellar biosyn 96.8 0.012 2.5E-07 61.9 12.0 133 71-206 74-225 (270)
455 cd03688 eIF2_gamma_II eIF2_gam 96.8 0.011 2.4E-07 52.5 9.5 71 369-440 2-90 (113)
456 PRK13185 chlL protochlorophyll 96.8 0.013 2.9E-07 61.8 12.0 81 138-224 116-201 (270)
457 COG1419 FlhF Flagellar GTP-bin 96.7 0.0037 8.1E-08 68.1 7.7 128 71-205 202-351 (407)
458 cd03702 IF2_mtIF2_II This fami 96.7 0.011 2.4E-07 51.7 9.2 75 374-453 2-79 (95)
459 CHL00072 chlL photochlorophyll 96.7 0.027 5.9E-07 60.1 14.2 85 139-230 115-204 (290)
460 cd02032 Bchl_like This family 96.7 0.021 4.6E-07 60.2 12.8 80 139-224 115-199 (267)
461 PRK13232 nifH nitrogenase redu 96.6 0.036 7.9E-07 58.6 14.3 85 137-223 114-203 (273)
462 cd02040 NifH NifH gene encodes 96.5 0.021 4.5E-07 60.2 11.8 84 139-224 116-205 (270)
463 TIGR00257 IMPACT_YIGZ uncharac 96.5 0.032 7E-07 55.8 12.0 113 619-733 88-200 (204)
464 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.016 3.5E-07 50.0 8.6 77 75-184 2-79 (99)
465 PRK13695 putative NTPase; Prov 96.4 0.0085 1.8E-07 58.8 7.4 40 161-202 94-136 (174)
466 KOG1533 Predicted GTPase [Gene 96.4 0.0059 1.3E-07 61.1 5.8 66 140-205 97-176 (290)
467 KOG4181 Uncharacterized conser 96.3 0.11 2.5E-06 54.8 15.0 24 71-94 187-210 (491)
468 PRK11568 hypothetical protein; 96.3 0.054 1.2E-06 54.2 12.3 111 619-733 88-200 (204)
469 KOG1424 Predicted GTP-binding 96.3 0.0028 6.1E-08 70.0 3.4 71 72-167 314-386 (562)
470 KOG3905 Dynein light intermedi 96.2 0.11 2.3E-06 54.6 13.7 35 307-342 254-288 (473)
471 TIGR03348 VI_IcmF type VI secr 96.2 0.0083 1.8E-07 76.0 7.0 116 71-205 110-256 (1169)
472 TIGR01287 nifH nitrogenase iro 96.1 0.044 9.6E-07 58.0 11.5 84 139-224 115-204 (275)
473 KOG0780 Signal recognition par 96.1 0.035 7.5E-07 59.6 10.0 127 72-205 101-253 (483)
474 COG0552 FtsY Signal recognitio 96.1 0.019 4.2E-07 60.9 8.1 129 71-204 138-296 (340)
475 TIGR01281 DPOR_bchL light-inde 96.1 0.044 9.6E-07 57.7 11.0 81 138-224 114-199 (268)
476 PRK13230 nitrogenase reductase 96.0 0.05 1.1E-06 57.8 11.0 87 138-225 115-206 (279)
477 cd03701 IF2_IF5B_II IF2_IF5B_I 95.9 0.054 1.2E-06 47.5 8.8 74 374-452 2-78 (95)
478 PRK01889 GTPase RsgA; Reviewed 95.8 0.013 2.7E-07 64.5 5.7 24 73-96 196-219 (356)
479 COG3523 IcmF Type VI protein s 95.8 0.026 5.6E-07 69.7 8.6 115 72-206 125-270 (1188)
480 cd03703 aeIF5B_II aeIF5B_II: T 95.7 0.061 1.3E-06 48.1 8.5 78 375-452 3-93 (110)
481 cd04178 Nucleostemin_like Nucl 95.7 0.018 3.9E-07 56.4 5.8 42 165-206 1-44 (172)
482 PF05783 DLIC: Dynein light in 95.6 0.23 4.9E-06 56.4 14.7 37 306-343 227-263 (472)
483 KOG3887 Predicted small GTPase 95.5 0.023 4.9E-07 57.0 5.7 116 74-209 29-152 (347)
484 PF14578 GTP_EFTU_D4: Elongati 95.5 0.11 2.4E-06 43.7 8.7 59 386-452 19-80 (81)
485 COG1162 Predicted GTPases [Gen 95.4 0.084 1.8E-06 55.7 9.8 44 164-207 80-125 (301)
486 KOG2484 GTPase [General functi 95.3 0.017 3.6E-07 62.3 4.1 59 70-151 250-308 (435)
487 smart00010 small_GTPase Small 95.1 0.032 7E-07 50.6 5.1 20 74-93 2-21 (124)
488 PF06858 NOG1: Nucleolar GTP-b 95.1 0.052 1.1E-06 42.3 5.1 47 157-203 6-58 (58)
489 COG1618 Predicted nucleotide k 95.0 0.17 3.7E-06 48.2 9.5 48 155-204 92-142 (179)
490 PF07015 VirC1: VirC1 protein; 95.0 0.15 3.3E-06 51.9 9.9 64 139-204 83-152 (231)
491 COG0563 Adk Adenylate kinase a 95.0 0.055 1.2E-06 53.3 6.6 103 74-200 2-112 (178)
492 KOG2423 Nucleolar GTPase [Gene 94.9 0.023 4.9E-07 60.9 3.7 59 70-151 305-363 (572)
493 PRK13233 nifH nitrogenase redu 94.8 0.16 3.5E-06 53.7 9.9 80 138-224 117-207 (275)
494 TIGR01969 minD_arch cell divis 94.7 0.22 4.7E-06 51.7 10.7 81 139-223 108-189 (251)
495 cd03116 MobB Molybdenum is an 94.6 0.17 3.7E-06 48.9 8.7 23 73-95 2-24 (159)
496 PRK13235 nifH nitrogenase redu 94.6 0.44 9.5E-06 50.4 12.8 84 138-223 116-205 (274)
497 KOG3022 Predicted ATPase, nucl 94.5 0.18 3.9E-06 52.1 8.9 68 136-203 153-221 (300)
498 TIGR01007 eps_fam capsular exo 94.5 0.13 2.8E-06 51.7 8.1 66 139-205 127-193 (204)
499 PRK13234 nifH nitrogenase redu 94.5 0.41 8.8E-06 51.3 12.2 84 138-224 118-208 (295)
500 KOG0082 G-protein alpha subuni 94.5 0.092 2E-06 56.7 7.1 81 124-204 179-274 (354)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-153 Score=1227.71 Aligned_cols=685 Identities=63% Similarity=1.016 Sum_probs=664.1
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
.+.+++|||+|++|.++||||+++++||++|.+...++|+++ .+.||+++.|++||||++++.+++.|.++.+||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiID 110 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---GATMDSMELERQRGITIQSAATYFTWRDYRINIID 110 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccC---ceeeehHHHHHhcCceeeeceeeeeeccceeEEec
Confidence 345689999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
||||+||.-++++||++.|+||+|+|+..|++.||..+|+|+.++++|.|.++||||+.++++.+++++++.+|+.+++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
+|+|++..+.|.|++|+++++++||++++|..+...+||+++.+.+.+.|++|+|.+++.||+|.|.||++.+++.++|.
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccc-cCccceeeccCCCCC-CcEEEEEeeeecc
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ-KNNEEKVILSGNPDG-PLVALAFKLEEGR 384 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~-p~~~~V~k~~~~~ 384 (761)
.+||+.++.+.|+||+||||++|.||++|||++++|||+|.|..++.+.. .+.++++...+..++ ||++++||+..++
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~ 350 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGR 350 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecC
Confidence 99999999999999999999999999999999999999999999998773 333344555544444 9999999999999
Q ss_pred CccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEeccccccCceeecC-CCccccccC
Q 004316 385 FGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDG-SVKYTMTSM 463 (761)
Q Consensus 385 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~GdtL~~~-~~~~~l~~~ 463 (761)
+|.+.|+|||+|+|++||.|||.++++++|+.+|++|+++..++|+++.|||||++.|+++.+|||+++. ...+.+.++
T Consensus 351 fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidcasGDTftd~~~~~~~m~si 430 (721)
T KOG0465|consen 351 FGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDCASGDTFTDKQNLALSMESI 430 (721)
T ss_pred ccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeeccccccCceeccCccccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 667889999
Q ss_pred CCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceee
Q 004316 464 HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 543 (761)
Q Consensus 464 ~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~ 543 (761)
++|+||++++|+|.+.+|.++|.+||.++.+|||+|+++.|.|++|++|+|||||||||..+||++|||+++++++|+|+
T Consensus 431 ~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~Va 510 (721)
T KOG0465|consen 431 HIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQVA 510 (721)
T ss_pred ecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004316 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (761)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv 623 (761)
|||||.+++++++.||||+||.|||+++...++|++.+....++|.+++.|+.+|++|++++++||.++++.|||.|.|+
T Consensus 511 yRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl 590 (721)
T KOG0465|consen 511 YRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPL 590 (721)
T ss_pred ehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcc
Confidence 99999999999999999999999999999999999988777789999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCe
Q 004316 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 703 (761)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~ 703 (761)
.|+++.|.||.+|++||++.+|+.|++.||++|+.+|+|++|||||.|+|.+|+|+.|.|+++|++|+|.|.+.+..++.
T Consensus 591 ~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~~ 670 (721)
T KOG0465|consen 591 SNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSEDY 670 (721)
T ss_pred cceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHh
Q 004316 704 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 754 (761)
Q Consensus 704 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~ 754 (761)
++|+|.+||++||||+++|||+|+|+|.|+|+|++|+|++.+.|++++.++
T Consensus 671 ~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~~ 721 (721)
T KOG0465|consen 671 KTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHKY 721 (721)
T ss_pred EEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999988653
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-143 Score=1231.33 Aligned_cols=684 Identities=50% Similarity=0.830 Sum_probs=655.1
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDT 147 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDT 147 (761)
.+++|||+|+||+|||||||+++||+.+|.+++.|++++| ++++|++++|++|||||+++.+++.|++ +++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCC
Confidence 5789999999999999999999999999999999999999 9999999999999999999999999996 99999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||+||..++.++++.+|+||+|+||.+|++.||+.+|+++.++++|+++|+||||+.++++...++++..+|+..+.++
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
|+||+..+.|.|++|+++++++.|.. |......++|.+..+...++|..+++.+++.||+++++|+++.+++.+++.+
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999986 5555558899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCcc-ceeeccCCCCCCcEEEEEeeeeccC-
Q 004316 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE-EKVILSGNPDGPLVALAFKLEEGRF- 385 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (761)
.+++.+..+.++|++|+||++|.|++.|||+++++||+|.+.+.+....+++. +.....++.++|++|+|||+..|++
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~ 321 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFV 321 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCC
Confidence 99999999999999999999999999999999999999999986654443332 2222345679999999999999998
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccCC
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (761)
|+++|+|||||+|++||.|+|.+.+++++|.+|+.|+|++++++++++||||+++.|+ ++.+|||||+.+.+..+..+.
T Consensus 322 g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~ 401 (697)
T COG0480 322 GKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESME 401 (697)
T ss_pred CeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999887667889999
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeE
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (761)
+|+||++++|+|++++|++||.++|++|++|||+++++.|+||||++|+|||||||||+++||+++|||++++++|+|+|
T Consensus 402 ~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~Y 481 (697)
T COG0480 402 FPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAY 481 (697)
T ss_pred CCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004316 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (761)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~ 624 (761)
||||.+.+...++|++|+||++||+++++.+||++++. ++.|.+.+.++.+|++|+++|++||+|++++|||+||||+
T Consensus 482 rETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~--~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~ 559 (697)
T COG0480 482 RETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGS--GFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVV 559 (697)
T ss_pred EEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCc--ceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceE
Confidence 99999998899999999999999999999999998764 8999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccC--C
Q 004316 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--D 702 (761)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~--~ 702 (761)
||+|+|.|+.||++||++++|+.|+++||++|+++|+|+||||||+|+|.+|++|+|+|+++|++|||+|++++..+ +
T Consensus 560 dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~ 639 (697)
T COG0480 560 DVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGG 639 (697)
T ss_pred eeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999883 5
Q ss_pred eEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhhhccC
Q 004316 703 DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 759 (761)
Q Consensus 703 ~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~~~~~ 759 (761)
+..|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|.+.+++++.+.++.+.
T Consensus 640 ~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~~ 696 (697)
T COG0480 640 LDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRKG 696 (697)
T ss_pred eEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhhcC
Confidence 689999999999999999999999999999999999999999999999999877653
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.7e-132 Score=1170.66 Aligned_cols=683 Identities=49% Similarity=0.824 Sum_probs=647.9
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
+.++||||+|+||+|+|||||+++|++.+|.+.+.+.++++ ++++|+.+.|++||+|+++....+.|++++++||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDT 82 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKDHRINIIDT 82 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeC
Confidence 46789999999999999999999999999999888888887 889999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||||+.++++.+.++++++.++..+.+.
T Consensus 83 PG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 162 (693)
T PRK00007 83 PGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPI 162 (693)
T ss_pred CCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeC-CCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
++|++...+|.|++|++.+..+.|.. ..+..+...++|.+..+++.+++++|+|.+++.||++||+||++.+++.++++
T Consensus 163 ~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~ 242 (693)
T PRK00007 163 QLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK 242 (693)
T ss_pred EecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHH
Confidence 99999999999999999999999953 34666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccc-cCccceeeccCCCCCCcEEEEEeeeeccC
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ-KNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 385 (761)
+.+++++..++|+||+|+||++|.|++.|||+|++++|+|.+++...... +.........|++++|++++|||+.+|++
T Consensus 243 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 322 (693)
T PRK00007 243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPF 322 (693)
T ss_pred HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCC
Confidence 99999999999999999999999999999999999999998765432111 11123455678999999999999999998
Q ss_pred -ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccC
Q 004316 386 -GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSM 463 (761)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~ 463 (761)
|+++|+|||||+|++||+|+|.+.++.++|.+|+.++|++..+++++.|||||++.|+ ++++||||++.+....++++
T Consensus 323 ~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~ 402 (693)
T PRK00007 323 VGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESM 402 (693)
T ss_pred CCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCC
Confidence 9999999999999999999999888889999999999999999999999999999999 88999999987767777888
Q ss_pred CCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceee
Q 004316 464 HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 543 (761)
Q Consensus 464 ~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~ 543 (761)
.+|+|+++++|+|.++.|.+||.++|++|.+|||+|+|.+|++|||++|+|||||||||+++||+++|++++++++|+|+
T Consensus 403 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~ 482 (693)
T PRK00007 403 EFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVA 482 (693)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004316 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (761)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv 623 (761)
|||||.+.++..+++++|+||++||++++++++|++++ .++.|.+++.++.+|++|+++|++||+||+++||||||||
T Consensus 483 yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~--~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv 560 (693)
T PRK00007 483 YRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPG--KGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPV 560 (693)
T ss_pred EeecccCccccCcccccccCCCCceEEEEEEEEeCCCC--CCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCce
Confidence 99999999888899999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCe
Q 004316 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 703 (761)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~ 703 (761)
+||+|+|+|+.+|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.+++..++.
T Consensus 561 ~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~ 640 (693)
T PRK00007 561 VDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGA 640 (693)
T ss_pred eeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004316 704 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 755 (761)
Q Consensus 704 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~ 755 (761)
+.|+|.+|++|+|||+++||++|+|+|+|+++|+||+++|++.+++|++++.
T Consensus 641 ~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 692 (693)
T PRK00007 641 KVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 (693)
T ss_pred EEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998764
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=4.7e-132 Score=1167.92 Aligned_cols=683 Identities=49% Similarity=0.819 Sum_probs=649.2
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
+.++||||+|+||+|+|||||+++|++.+|.+.+.+.++++ ++++|+.+.|++||+|+++....+.|++++++||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDT 80 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKGHRINIIDT 80 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcC
Confidence 35689999999999999999999999999998888888887 889999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++...++|+|+++||||+.+++..+.++++++.++..+.+.
T Consensus 81 PG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 81 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPI 160 (691)
T ss_pred CCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeC-CCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
++|+....+|.|++|+.++..+.|.. ..+..+...++|.++.+++.+++++|+|.+++.||+++|+||++.+++.+++.
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999954 34667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (761)
+.++++...++|+||+|+||++|.|++.|||+|++++|+|.+++..+.............|++++|++++|||+++|++
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 320 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFV 320 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCC
Confidence 9999999999999999999999999999999999999999877654332211223455778999999999999999998
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccCC
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (761)
|+++|+|||||+|++||.|++.+.++++++.+||.++|++..+++++.|||||+|.|+ ++++||||++......++++.
T Consensus 321 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~ 400 (691)
T PRK12739 321 GRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESME 400 (691)
T ss_pred CeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 889999999887777788888
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeE
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (761)
+|+|+++++|+|.++.|++||.+||++|.++||+|+|++|++|||++|+||||||||+|++||+++|++++++++|.|+|
T Consensus 401 ~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~y 480 (691)
T PRK12739 401 FPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAY 480 (691)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004316 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (761)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~ 624 (761)
||||.+.++..+++++|+||++||++++++++|++++ .++.|.+++.++.+|++|+++|++||+||+++||||||||+
T Consensus 481 rEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~--~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~ 558 (691)
T PRK12739 481 RETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEG--KGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMV 558 (691)
T ss_pred eeccCCcccccceeccccCCCCceeEEEEEEEECCCC--CCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCcee
Confidence 9999999988899999999999999999999999875 48999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeE
Q 004316 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 704 (761)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 704 (761)
||+|+|.|+.+|+++|++++|+.|+++||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..++..
T Consensus 559 ~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~ 638 (691)
T PRK12739 559 DVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQ 638 (691)
T ss_pred eEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877888
Q ss_pred EEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004316 705 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 755 (761)
Q Consensus 705 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~ 755 (761)
.|+|++|++|+|||+++||++|+|+|+|+++|+||+++|++.+++|+++..
T Consensus 639 ~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (691)
T PRK12739 639 IVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKRK 689 (691)
T ss_pred EEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998764
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.2e-131 Score=1165.38 Aligned_cols=683 Identities=49% Similarity=0.826 Sum_probs=650.1
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
.+.++||||+|+||+|+|||||+|+|++.+|.+.+.++++++ ++++|+.+.|+++|+|+++....+.|++++++|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g---~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG---AATMDWMEQEKERGITITSAATTVFWKGHRINIID 81 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence 346789999999999999999999999999999888888877 78999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
||||.+|..++.++++.+|++|+|+|+.+|++.|++.+|+++...++|+++|+||+|+.++++.+.++++++.++..+.+
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVP 161 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
.++|+....+|.|++|++.+..++|++..+..+...++|+++.+++.++|++|+|.+++.||++||+||++.+++.+++.
T Consensus 162 ~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 162 IQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999998878888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (761)
+.+++++..++++||+||||++|.|++.|||+|++++|+|.+++.......+..+.....|++++||+|+|||+.+|++
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 321 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFV 321 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCC
Confidence 9999999999999999999999999999999999999999876543221111223445678999999999999999998
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccCC
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (761)
|+++|+|||||+|+.||+|+|...++.+++.+|+.++|++..+++++.|||||++.|+ ++.+||||++......++++.
T Consensus 322 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 401 (689)
T TIGR00484 322 GQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERME 401 (689)
T ss_pred CeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCC
Confidence 9999999999999999999999888899999999999999999999999999999999 789999999887777788888
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeE
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (761)
+|+|+++++|+|.++.|++||.++|++|.++||+|+|.+|++|||++|+|||||||||+++||+++|++++++++|.|+|
T Consensus 402 ~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~y 481 (689)
T TIGR00484 402 FPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAY 481 (689)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004316 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (761)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~ 624 (761)
||||.+.++..+++++|+||++||++|+++++|++++ ++.|.+.+.++.+|++|+++|++||+||+++||||||||+
T Consensus 482 rEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~---g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~ 558 (689)
T TIGR00484 482 RETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK---GYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVV 558 (689)
T ss_pred eecccCccccccccccccCCCCceEEEEEEEEECCCC---CcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCcee
Confidence 9999999888899999999999999999999999864 8999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeE
Q 004316 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 704 (761)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 704 (761)
||+|+|+++.+|+++|++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+|+++|++|||+|.+++..++.+
T Consensus 559 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~ 638 (689)
T TIGR00484 559 DIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQ 638 (689)
T ss_pred eEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred EEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004316 705 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 755 (761)
Q Consensus 705 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~ 755 (761)
.|+|++|++|+|||+++||++|+|+|+|+++|+||++||++.+++|+++++
T Consensus 639 ~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (689)
T TIGR00484 639 KIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKRK 689 (689)
T ss_pred EEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999997653
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1e-127 Score=1135.35 Aligned_cols=679 Identities=48% Similarity=0.795 Sum_probs=642.4
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
+++++|||+|+||+|+|||||+++|++.+|.+.+.+.++.+ ++.+|+.+.|+++|+|+......+.|+++.++||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG---TTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC---cccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 45689999999999999999999999999999888888877 788999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++..+++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+.++++.+.++++++.++..+.++
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPL 160 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCC-CCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSN-GEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~-g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
|+|++.+..|.|++|+..++.+.|...+ +..+...++|+.+.+++.+++++|+|.+++.||+++|+||++.+++.+++.
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 9999999999999999999999996543 566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (761)
..+++++..++++|||||||++|.||+.|||+|++++|+|.+++..+.... ........|++++|++++|||++++++
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 319 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKD-NGKPVKVDPDPEKPLLALVFKVQYDPYA 319 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCC-CCCceeecCCCCCCeEEEEEEeeecCCC
Confidence 999999999999999999999999999999999999999987655433221 111233568899999999999999998
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccCC
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (761)
|+++|+|||||+|++||+|++.+.++.+++.+|+.++|.+..+++++.||||+++.|+ ++.+||||++......++++.
T Consensus 320 G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 399 (687)
T PRK13351 320 GKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLT 399 (687)
T ss_pred ceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCC
Confidence 9999999999999999999999999899999999999999999999999999999999 789999999877666677788
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeE
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (761)
+|+|+++++|+|.+++|.++|.++|++|.+|||+|++++|++|||++|+||||||||++++||+++|++++++++|.|+|
T Consensus 400 ~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y 479 (687)
T PRK13351 400 FPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAY 479 (687)
T ss_pred CCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004316 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (761)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~ 624 (761)
||||.+.++..+++++|+||++||++|+++++|++++ .++.|.+.+.++.+|++|+++|++||++|+++||||||||+
T Consensus 480 ~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~--~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~ 557 (687)
T PRK13351 480 RETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERG--AGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVT 557 (687)
T ss_pred EeeccccccccceeeeccCCCceEEEEEEEEEECCCC--CCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCcee
Confidence 9999999888899999999999999999999999876 46999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeE
Q 004316 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 704 (761)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 704 (761)
||+|+|+|+.+|+++|++++|+.|+++||++|+++|+|+||||||+|||.||++|+|+|+++|++|||+|++++..++..
T Consensus 558 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 637 (687)
T PRK13351 558 DLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGE 637 (687)
T ss_pred eEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998865544
Q ss_pred E-EEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHH
Q 004316 705 V-ITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVK 752 (761)
Q Consensus 705 ~-i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~ 752 (761)
. |+|++|++||+||+++||++|+|+|+|+|+|+||+++|++.+++|+.
T Consensus 638 ~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 638 VLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred EEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 5 99999999999999999999999999999999999999999999874
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=8.7e-121 Score=1075.25 Aligned_cols=665 Identities=51% Similarity=0.831 Sum_probs=630.2
Q ss_pred EeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHHHH
Q 004316 78 SAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEV 157 (761)
Q Consensus 78 iG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 157 (761)
+||+|||||||+++|++.+|.+.+.++++++ .+++|+.+.|+++|+|+......+.|+++.++|||||||.+|..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG---TTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC---cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHH
Confidence 6999999999999999999999888888777 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeecCCCcCcc
Q 004316 158 ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQF 237 (761)
Q Consensus 158 ~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~ 237 (761)
.++++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..++..+.++++++.++..+.+.++|+..+..|
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCc
Q 004316 238 QGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARK 317 (761)
Q Consensus 238 ~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~ 317 (761)
.|++|++.++.++|+ ++..+...++|+++.+++.+++++|+|.+++.||+++++|+++.+++.+++...+++++..++
T Consensus 158 ~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~ 235 (668)
T PRK12740 158 TGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235 (668)
T ss_pred eEEEECccceEEEec--CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998 466777788999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcc
Q 004316 318 FIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEG 396 (761)
Q Consensus 318 ~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG 396 (761)
|+||+++||++|.|++.|||+|++++|+|.+++..... .........|++++|++++|||++++++ |+++|+|||||
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG 313 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSG 313 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCC--CCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeee
Confidence 99999999999999999999999999999875542110 1111233468899999999999999998 99999999999
Q ss_pred eecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccCCCCCceEEEEEE
Q 004316 397 VIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMHVPEPVMSLAVQ 475 (761)
Q Consensus 397 ~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~~p~Pv~~~~ie 475 (761)
+|++||+|++.++++.++|.+|+.++|++..+++++.|||||++.|+ ++.+||||++......++++.+|+|+++++|+
T Consensus 314 ~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~ 393 (668)
T PRK12740 314 TLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIE 393 (668)
T ss_pred EEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEE
Confidence 99999999999988889999999999999999999999999999999 78999999987766778888899999999999
Q ss_pred eCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeEEEeeeccceee
Q 004316 476 PVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFD 555 (761)
Q Consensus 476 p~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~ 555 (761)
|.+++|.++|.++|++|+++||+|+|..|+++||++|+|+|||||||+++||+++|++++.+++|+|+|||||.++++..
T Consensus 394 p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~ 473 (668)
T PRK12740 394 PKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGH 473 (668)
T ss_pred ECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCcc
Q 004316 556 YLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGAS 635 (761)
Q Consensus 556 ~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~ 635 (761)
+++++++||++||++|+++++|++++ .++.|.+++.++.+|++|+++|++||++|+++||||||||+||+|+|+++.+
T Consensus 474 ~~~~~~~~~~~~~~~v~l~~ep~~~~--~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~ 551 (668)
T PRK12740 474 GRHKKQSGGHGQFGDVWLEVEPLPRG--EGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSY 551 (668)
T ss_pred ceeccccCCCCceEEEEEEEEECCCC--CceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccc
Confidence 99999999999999999999999865 4799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhh
Q 004316 636 HAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNM 715 (761)
Q Consensus 636 ~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~ 715 (761)
|+++|++++|+.|+++||++|+++|+|+||||||+|||+||++|+|.|+++|++|||+|++++..++.+.|+|++|++|+
T Consensus 552 ~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~ 631 (668)
T PRK12740 552 HSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEM 631 (668)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999877655999999999999
Q ss_pred hchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHH
Q 004316 716 FGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLV 751 (761)
Q Consensus 716 ~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~ 751 (761)
+||+++||++|+|+|+|+++|+||+++|++.+++++
T Consensus 632 ~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 632 FGYATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred hchHHHHHHhcCCeEEEEEEecccccCCHHHHHHHh
Confidence 999999999999999999999999999999988886
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=8.8e-119 Score=1070.62 Aligned_cols=674 Identities=27% Similarity=0.398 Sum_probs=579.7
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--------
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------- 138 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------- 138 (761)
.++++||||+|+||+|||||||+++|++.+|.+.+. ..++ .+++|+.++|++||+|+++....+.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGD---VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 456899999999999999999999999999998763 3333 678999999999999999999999884
Q ss_pred --------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC-----
Q 004316 139 --------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----- 205 (761)
Q Consensus 139 --------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~----- 205 (761)
++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+|+|+||||+.
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhc
Confidence 6889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C----CChHHHHHHHHHH---hCCce-eeeee-cCCC----cCccccc------------------eecccceeE---
Q 004316 206 --G----ADPWKVLDQARSK---LRHHC-AAVQV-PMGL----EDQFQGL------------------VDLVQLTAY--- 249 (761)
Q Consensus 206 --~----~~~~~~~~~i~~~---l~~~~-~~~~~-pi~~----~~~~~g~------------------idl~~~~~~--- 249 (761)
+ +++.+++++++.. ++... .++++ |++. +..+.|| +|++..+.|
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~ 248 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 3 5677888888832 22111 12333 5544 2333444 444443333
Q ss_pred EeeCCCCCeEEecC--CC---hhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC--CCCChhHHHHHHHHHHhcCcceeEe
Q 004316 250 YFHGSNGEKIVTGE--VP---ADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPVF 322 (761)
Q Consensus 250 ~~~~~~g~~~~~~~--i~---~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~ 322 (761)
||++ +++.+...+ .+ .+|.+++++++.+|++.+++.|++++++|+++ .+++.++++. +++.+....+.|+|
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~ 326 (843)
T PLN00116 249 FFDP-ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWL 326 (843)
T ss_pred eEcC-CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhc
Confidence 6654 344444444 33 34677778899999999999999999999997 5799999988 99999999999999
Q ss_pred ecccCCCcchHHHHHHHHhhCCCCcccccccccc------cCccceeeccCCCCCCcEEEEEeeeeccC-cc-EEEEEEE
Q 004316 323 MGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLRIY 394 (761)
Q Consensus 323 ~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~RV~ 394 (761)
++| +.|||+|++++|+|.+++..+... ..........|++++|++++|||+..+++ |+ ++|+|||
T Consensus 327 ~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVy 399 (843)
T PLN00116 327 PAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
T ss_pred CCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEE
Confidence 976 789999999999998766543321 12223456788999999999999999886 77 9999999
Q ss_pred cceecCCCEEE----ecCCCeE-----EecCcEEEEecCceeecceecCCCEEEEecc-cc-ccCceeecCC--Cccccc
Q 004316 395 EGVIRKGDFII----NVNTGKK-----IKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFTDGS--VKYTMT 461 (761)
Q Consensus 395 sG~l~~g~~v~----~~~~~~~-----~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~~~~--~~~~l~ 461 (761)
||+|+.||.|+ |.+.++. ++|.+||.++|++.++|++++|||||+|.|+ ++ .+||||++.. ....++
T Consensus 400 sGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~ 479 (843)
T PLN00116 400 SGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIK 479 (843)
T ss_pred eeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCcccc
Confidence 99999999998 4444433 5899999999999999999999999999999 54 4499998876 556777
Q ss_pred cCCCC-CceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc--ceeEEEc
Q 004316 462 SMHVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY--KVDATVG 538 (761)
Q Consensus 462 ~~~~p-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~v~v~~~ 538 (761)
++.+| +|+++++|+|.+++|++||.+||++|.+|||+|++.. ++|||++|+||||||||||++||+++| |++++++
T Consensus 480 ~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s 558 (843)
T PLN00116 480 AMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVS 558 (843)
T ss_pred ccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEc
Confidence 88888 9999999999999999999999999999999999864 899999999999999999999999999 9999999
Q ss_pred CceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCC------------------------------------
Q 004316 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------------------------ 582 (761)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~------------------------------------ 582 (761)
+|+|+|||||.++++..++++ + +++|++|+++++|++++.
T Consensus 559 ~p~V~yrETI~~~~~~~~~~~-~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (843)
T PLN00116 559 DPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKI 634 (843)
T ss_pred CCeEEEEecccccccCcEEEe-c---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCe
Confidence 999999999999887766633 4 678899999999997641
Q ss_pred -------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCcccc--CCCcHHHHHHHHHHHH
Q 004316 583 -------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAAIYAF 653 (761)
Q Consensus 583 -------~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~ 653 (761)
.+++.|.+++.|..+.++++++|++||+||+++||||||||+||+|+|.|+.+|+ .++.+++|+.|+++||
T Consensus 635 ~~~gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~ 714 (843)
T PLN00116 635 WCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVI 714 (843)
T ss_pred eeecCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHH
Confidence 1238899999887777788889999999999999999999999999999999998 5667789999999999
Q ss_pred HHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCC--eEEEEEEechhhhhchHHHHhhhcCCeEE
Q 004316 654 RQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGE 731 (761)
Q Consensus 654 ~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~ 731 (761)
++|+++|+|+||||||+|||+||++++|+|++||++|||+|++++..++ .+.|+|++|++|||||+++||++|+|+|+
T Consensus 715 ~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~ 794 (843)
T PLN00116 715 YASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (843)
T ss_pred HHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCe
Confidence 9999999999999999999999999999999999999999999988654 48999999999999999999999999999
Q ss_pred EEEEeCceecCChhH------HHHHHHHhhhccC
Q 004316 732 FTMEYKEHAPVSQDV------QLQLVKTHNAGRG 759 (761)
Q Consensus 732 ~~~~f~~y~~v~~~~------~~~i~~~~~~~~~ 759 (761)
|+|+|+||++||+|+ +.+++.+.|+.++
T Consensus 795 ~~~~f~~y~~v~~dp~~~~~~a~~~~~~~R~rKG 828 (843)
T PLN00116 795 PQCVFDHWDMMSSDPLEAGSQAAQLVADIRKRKG 828 (843)
T ss_pred EEEEeceeEECCCCCCCchhHHHHHHHHHHhhCC
Confidence 999999999998654 5667777766653
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=2.4e-117 Score=1055.98 Aligned_cols=670 Identities=28% Similarity=0.455 Sum_probs=579.3
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--------
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------- 138 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------- 138 (761)
.+++++|||+|+||+|||||||+++|++.+|.+++. ..+. .+++|+.++|++||+|++++...+.|.
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK--NAGD---ARFTDTRADEQERGITIKSTGISLYYEHDLEDGDD 88 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeecccchhhHhhcceeeccceEEEeecccccccC
Confidence 346789999999999999999999999999988763 2222 567999999999999999998888886
Q ss_pred --CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC----C------
Q 004316 139 --DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----G------ 206 (761)
Q Consensus 139 --~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~----~------ 206 (761)
++.++|+|||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||+. +
T Consensus 89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~ 168 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEI 168 (836)
T ss_pred CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred -CChHHHHHHHHHHhC-----------CceeeeeecCCCcC--------cccc--------ceecccceeE---EeeCCC
Q 004316 207 -ADPWKVLDQARSKLR-----------HHCAAVQVPMGLED--------QFQG--------LVDLVQLTAY---YFHGSN 255 (761)
Q Consensus 207 -~~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~~--------~~~g--------~idl~~~~~~---~~~~~~ 255 (761)
+++.+++++++..++ ..+.+.++|++++. .|.| .++.+....| ||++ .
T Consensus 169 ~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~-~ 247 (836)
T PTZ00416 169 YQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA-K 247 (836)
T ss_pred HHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC-C
Confidence 677889999998765 37788899998765 2333 3444443333 6644 3
Q ss_pred CCeEEecC-------CChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc--CCCCChhHH--HH-HHHHHHhcCcceeEee
Q 004316 256 GEKIVTGE-------VPADMETFVAEKRRELIELVSEVDDKLGDMFLS--DEPISSGDL--EE-AIRRATVARKFIPVFM 323 (761)
Q Consensus 256 g~~~~~~~-------i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~ 323 (761)
++.+...+ +|+.|.+++++++.+|++.+++.||+++++|++ +.+++.+++ .. .+.+++. ++|+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv-- 324 (836)
T PTZ00416 248 TKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA-- 324 (836)
T ss_pred CCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch--
Confidence 55444443 456788999999999999999999999999999 668888874 33 5666666 899998
Q ss_pred cccCCCcchHHHHHHHHhhCCCCccccccccc------ccCccceeeccCCCCCCcEEEEEeeeeccC-cc-EEEEEEEc
Q 004316 324 GSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLRIYE 395 (761)
Q Consensus 324 ~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~RV~s 395 (761)
++.|||+|++++|+|.+++..+.. ...........|++++|++++|||+.++++ |+ ++|+||||
T Consensus 325 --------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~S 396 (836)
T PTZ00416 325 --------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFS 396 (836)
T ss_pred --------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEe
Confidence 589999999999999876644321 112222456788999999999999999997 88 89999999
Q ss_pred ceecCCCEEE----ecCCCeEE-----ecCcEEEEecCceeecceecCCCEEEEecc-c--cccCceeecCCCccccccC
Q 004316 396 GVIRKGDFII----NVNTGKKI-----KVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D--CASGDTFTDGSVKYTMTSM 463 (761)
Q Consensus 396 G~l~~g~~v~----~~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~--~~~GdtL~~~~~~~~l~~~ 463 (761)
|+|+.||.|+ +.+.+.++ +|.+||.++|++..+|++++|||||+|.|+ + +++| ||++......+.++
T Consensus 397 GtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i 475 (836)
T PTZ00416 397 GTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDM 475 (836)
T ss_pred eeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCccccccc
Confidence 9999999998 44444444 599999999999999999999999999999 5 7899 99887766777778
Q ss_pred CCC-CceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-ceeEEEcCce
Q 004316 464 HVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGKPR 541 (761)
Q Consensus 464 ~~p-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~~~p~ 541 (761)
.+| +|+++++|+|.+++|++||.++|++|.+|||++.+.. ++|||++|+||||+|||+|++||+++| ++++++++|+
T Consensus 476 ~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~ 554 (836)
T PTZ00416 476 KYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPV 554 (836)
T ss_pred ccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCE
Confidence 776 9999999999999999999999999999999999965 899999999999999999999999999 9999999999
Q ss_pred eeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCC----------------------CCCce-----------e
Q 004316 542 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS----------------------PAKFE-----------F 588 (761)
Q Consensus 542 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~----------------------~~~~~-----------~ 588 (761)
|+|||||.+.++..+++++++|+ ++|+++++|++++. ..++. |
T Consensus 555 V~yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f 630 (836)
T PTZ00416 555 VSYRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCF 630 (836)
T ss_pred EEEEEEecccccceEEEECCCCC----eeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeec
Confidence 99999999999999999998765 38999999997641 01333 4
Q ss_pred eecccCCCC------CcchHH----HHHHHHHHHHhcCCcCCCCeeeEEEEEEeCcccc--CCCcHHHHHHHHHHHHHHH
Q 004316 589 ENLLVGQAI------PSNFIP----AIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAAIYAFRQC 656 (761)
Q Consensus 589 ~~~~~~~~~------~~~~~~----~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a 656 (761)
..++.|+.+ +.+|++ +|++||+||+++||||||||+||+|+|+++.+|+ +++++++|+.|+++||++|
T Consensus 631 ~~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a 710 (836)
T PTZ00416 631 GPENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYAC 710 (836)
T ss_pred cCCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHH
Confidence 455555555 555555 9999999999999999999999999999999998 7889999999999999999
Q ss_pred HHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCC--eEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004316 657 YAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 734 (761)
Q Consensus 657 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 734 (761)
+++|+|+||||||+|+|+||++++|+|++||++|||+|+++++.++ .+.|+|++|++|||||+++||++|+|+|+|+|
T Consensus 711 ~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~ 790 (836)
T PTZ00416 711 ELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQC 790 (836)
T ss_pred HhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEE
Confidence 9999999999999999999999999999999999999999988655 48999999999999999999999999999999
Q ss_pred EeCceecCChhH------HHHHHHHhhhccC
Q 004316 735 EYKEHAPVSQDV------QLQLVKTHNAGRG 759 (761)
Q Consensus 735 ~f~~y~~v~~~~------~~~i~~~~~~~~~ 759 (761)
+|+||++||+++ +++++.+.|+.++
T Consensus 791 ~F~~y~~vp~dp~~~~~~a~~~~~~~R~rKG 821 (836)
T PTZ00416 791 VFDHWQVVPGDPLEPGSKANEIVLSIRKRKG 821 (836)
T ss_pred EeccEEECCCCCCCchhHHHHHHHHHHHhCC
Confidence 999999998665 5667777776653
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=4.1e-114 Score=1017.59 Aligned_cols=635 Identities=32% Similarity=0.476 Sum_probs=555.0
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEE----EeecCeEEE
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS----CAWKDYQIN 143 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~i~ 143 (761)
+++++|||+|+||.|||||||+++|++.+|.+.+. ..++ .+++|+.++|++||+|+.+.... ++|++++++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~---~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQ---QLYLDFDEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCc---eeecCCCHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 45689999999999999999999999999998763 2333 56799999999999999987655 678899999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
|||||||.+|..++.++++.+|++|+|+|+.+|+..+|+.+|+.+...++|+++|+||+|+..+++....+++++.++..
T Consensus 90 liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~ 169 (720)
T TIGR00490 90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKI 169 (720)
T ss_pred EEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999988765
Q ss_pred eeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc-------
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS------- 296 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~------- 296 (761)
+..++.++... +++++. ..+.+..++.++.+++.|++
T Consensus 170 ~~~v~~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 170 ITEVNKLIKAM-----------------------------APEEFR-------DKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred hHHHHhhhhcc-----------------------------CCHHHh-------hceEechhhCCHHHHhhhhcccccchh
Confidence 54433332110 011110 11233444556666666665
Q ss_pred --CCCCChhHHHHHHHHHHhcC--cceeEeecccCCCcchHHHHHHHHhhCCCCccccccccc------ccCccceeecc
Q 004316 297 --DEPISSGDLEEAIRRATVAR--KFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILS 366 (761)
Q Consensus 297 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~------~~~~~~~~~~~ 366 (761)
+..++.+++.+.++...... .|+||+ +.|||+|++++|+|.+++..+.. .+++.......
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~----------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPLH----------QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhHH----------HHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 44556666666665444333 588983 89999999999999876543322 12222245577
Q ss_pred CCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-c
Q 004316 367 GNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D 444 (761)
Q Consensus 367 ~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~ 444 (761)
|++++|++++|||+.++++ |+++|+|||||+|++||.|++.+.++.++|.+|+.++|.+.++++++.|||||+|.|+ +
T Consensus 284 ~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 363 (720)
T TIGR00490 284 CDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363 (720)
T ss_pred CCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccc
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cccCceeecCCCc-cccccC-CCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHH
Q 004316 445 CASGDTFTDGSVK-YTMTSM-HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDI 522 (761)
Q Consensus 445 ~~~GdtL~~~~~~-~~l~~~-~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei 522 (761)
+.+||||++.... ..++++ .+|+|+++++|+|.++.|++||.++|++|++|||+|++.+|++|||++|+||||||||+
T Consensus 364 ~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei 443 (720)
T TIGR00490 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEI 443 (720)
T ss_pred cccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHH
Confidence 8899999977644 345655 57899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceeEEEcCceeeEEEeeeccce-eeeeeecccCCCcceEEEEEEEEeCCCCC-------------------
Q 004316 523 YVERIRREYKVDATVGKPRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------- 582 (761)
Q Consensus 523 ~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~i~P~~~~~------------------- 582 (761)
+++||+++||+++++++|+|+|||||.+.++ ..+++ .++|++|+++++|++++.
T Consensus 444 ~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~ 517 (720)
T TIGR00490 444 IVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKER 517 (720)
T ss_pred HHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccchHHH
Confidence 9999999999999999999999999999877 44443 347899999999998761
Q ss_pred --------------------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCcccc--CCC
Q 004316 583 --------------------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDS 640 (761)
Q Consensus 583 --------------------~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 640 (761)
+.+|.|.+.+.|+.+|++|++||++||+||+++||||||||+||+|+|+|+.+|+ +||
T Consensus 518 ~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds 597 (720)
T TIGR00490 518 RRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHR 597 (720)
T ss_pred HHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccC
Confidence 1589999999999999999999999999999999999999999999999999995 889
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHH
Q 004316 641 SELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYST 720 (761)
Q Consensus 641 ~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~ 720 (761)
++++|+.|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..++.+.|+|++|++|||||++
T Consensus 598 ~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~ 677 (720)
T TIGR00490 598 GPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAG 677 (720)
T ss_pred ccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999987677899999999999999999
Q ss_pred HHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhhhccC
Q 004316 721 ALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 759 (761)
Q Consensus 721 ~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~~~~~ 759 (761)
+||++|+|+|+|+|+|+||+++|++.+++++.+.|++++
T Consensus 678 ~Lrs~T~G~a~~~~~f~~y~~vp~~~~~~ii~~~r~rkg 716 (720)
T TIGR00490 678 AIRGATSGRCLWSTEHAGFELVPQNLQQEFVMEVRKRKG 716 (720)
T ss_pred HHHhhCCCCceEEEEecccccCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999988764
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.3e-113 Score=1012.70 Aligned_cols=642 Identities=31% Similarity=0.498 Sum_probs=549.5
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee----cCeEEE
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQIN 143 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~ 143 (761)
++++||||+|+||+|||||||+++|++.+|.+.+. ..++ ++++|+.++|++||+|++++...+.| +++.++
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGE---QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCc---ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 46789999999999999999999999999998763 3333 67899999999999999999988877 478999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||+|+..+++....++++..++..
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~ 170 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKI 170 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887665555555554431
Q ss_pred eeeeeecCCCcCccccceeccccee----EEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCC
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTA----YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEP 299 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~----~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~ 299 (761)
. ..+.++++...... |.+.+.+|+....+.... +...+..+.+..++. +++++.|+++
T Consensus 171 ~----------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~-----~~~~~~~~~~~~~~~-~~l~e~~~~~-- 232 (731)
T PRK07560 171 I----------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYN-----WAISVPMMQKTGIKF-KDIIDYYEKG-- 232 (731)
T ss_pred H----------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccc-----cceeHHHHHHhCCCH-HHHHHHHhcC--
Confidence 1 12334444443332 234454555443322211 001112233333344 6688888543
Q ss_pred CChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccc------cCccceeeccCCCCCCc
Q 004316 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPL 373 (761)
Q Consensus 300 ~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~p~ 373 (761)
+.+++. .++|++ +.|||+|++++|+|.+++..+... .+........|++++|+
T Consensus 233 -~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~ 291 (731)
T PRK07560 233 -KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPL 291 (731)
T ss_pred -CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCE
Confidence 233332 348885 789999999999998766543221 11222345678999999
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCcee
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTF 451 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL 451 (761)
+++|||+.+|++ |+++|+|||||+|++||.|++.+.+..++|.+|+.++|++..+++++.|||||+|.|+ ++.+||||
T Consensus 292 ~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL 371 (731)
T PRK07560 292 VMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETV 371 (731)
T ss_pred EEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEE
Confidence 999999999998 9999999999999999999999999889999999999999999999999999999999 78899999
Q ss_pred ecCCCccccccC-CCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhh
Q 004316 452 TDGSVKYTMTSM-HVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRRE 530 (761)
Q Consensus 452 ~~~~~~~~l~~~-~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~ 530 (761)
++......+.++ .+|+|+++++|+|.++.|++||.++|++|++|||+|+|..|++|||++|+||||||||++++||+++
T Consensus 372 ~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~ 451 (731)
T PRK07560 372 VSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRD 451 (731)
T ss_pred eCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 987766677776 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEcCceeeEEEeeeccce-eeeeeecccCCCcceEEEEEEEEeCCCCC---------------------------
Q 004316 531 YKVDATVGKPRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGS--------------------------- 582 (761)
Q Consensus 531 f~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~i~P~~~~~--------------------------- 582 (761)
|++++++++|+|+|||||.+.++ ..+. + .++|++|+++++|++++.
T Consensus 452 ~~vev~~~~p~V~yrETI~~~~~~~~~~----~--~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (731)
T PRK07560 452 YGIEVVTSEPIVVYRETVRGKSQVVEGK----S--PNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIE 525 (731)
T ss_pred hCCceEecCCEEEEEEecccCccceEEE----C--CCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhh
Confidence 99999999999999999998874 3322 2 345899999999998652
Q ss_pred --------------CCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccc--cCCCcHHHHH
Q 004316 583 --------------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASH--AVDSSELAFK 646 (761)
Q Consensus 583 --------------~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~--~~~s~~~~~~ 646 (761)
..+|.|++.+.|+.+|++|+++|++||+||+++||||||||+||+|+|+|+++| ..++++++|+
T Consensus 526 ~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~ 605 (731)
T PRK07560 526 AGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVI 605 (731)
T ss_pred cCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHH
Confidence 137999999999999999999999999999999999999999999999999999 5678899999
Q ss_pred HHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhc
Q 004316 647 MAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMT 726 (761)
Q Consensus 647 ~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T 726 (761)
.|+++||++|+++|+|+||||||+|+|+||++|+|+|+++|++|||+|++++..++.+.|+|++|++|||||+++||++|
T Consensus 606 ~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T 685 (731)
T PRK07560 606 PAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSAT 685 (731)
T ss_pred HHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhC
Confidence 99999999999999999999999999999999999999999999999999987777899999999999999999999999
Q ss_pred CCeEEEEEEeCceecCChhHHHHHHHHhhhccC
Q 004316 727 QGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 759 (761)
Q Consensus 727 ~G~~~~~~~f~~y~~v~~~~~~~i~~~~~~~~~ 759 (761)
+|+|+|+|+|+||++||++.+++++.+.|+.++
T Consensus 686 ~G~~~~~~~f~~y~~v~~~~~~~ii~~~r~rKG 718 (731)
T PRK07560 686 EGRALWSTEFAGFEPVPDSLQLDIVRQIRERKG 718 (731)
T ss_pred cCCceEEEEeccceeCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999987764
No 12
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-112 Score=867.02 Aligned_cols=670 Identities=33% Similarity=0.531 Sum_probs=600.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
..++|||+|++|+|+||||.++++||.+|.+...|.|++| .+++|++..|++||||++++..+++|+|+++|+||||
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddg---dtvtdfla~erergitiqsaav~fdwkg~rinlidtp 110 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDG---DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP 110 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCC---chHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence 4689999999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
||+||.-++.+++|+.|+++.|+|++.|+++||..+|+++.++++|.++++||||...++++..++.++++|+..+..+|
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~ 190 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQ 190 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCcc-ccceecccceeEEe--eCCCCCeEEecCC----ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC----
Q 004316 229 VPMGLEDQF-QGLVDLVQLTAYYF--HGSNGEKIVTGEV----PADMETFVAEKRRELIELVSEVDDKLGDMFLSD---- 297 (761)
Q Consensus 229 ~pi~~~~~~-~g~idl~~~~~~~~--~~~~g~~~~~~~i----~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~---- 297 (761)
+|+++...| .|++|++..+.+.| +...|+.|...|+ .+++.+...+++..|++++++.|+++.++||+.
T Consensus 191 lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n 270 (753)
T KOG0464|consen 191 LPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDEN 270 (753)
T ss_pred ecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcc
Confidence 999999999 89999998888777 5566888887775 356788889999999999999999999998874
Q ss_pred -CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEE
Q 004316 298 -EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (761)
Q Consensus 298 -~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (761)
+.++.++++.++++.+...+..|++||||.++.||++|||++.-|+|||.++.-- + ..-..+.++++
T Consensus 271 ~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernye-f-----------lqwykddlcal 338 (753)
T KOG0464|consen 271 FDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYE-F-----------LQWYKDDLCAL 338 (753)
T ss_pred ccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchH-H-----------HhhhhhhHHHH
Confidence 4688999999999999999999999999999999999999999999999875321 1 11245678999
Q ss_pred EEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecC
Q 004316 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDG 454 (761)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~ 454 (761)
.||+.+|+. |.++|.|+|||+++.+..|+|.+....+.+.++|.+.++++.+|+++.||+|...+|+ .+.+|||+..+
T Consensus 339 afkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivas 418 (753)
T KOG0464|consen 339 AFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVAS 418 (753)
T ss_pred hhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEec
Confidence 999999987 9999999999999999999999999999999999999999999999999999999999 89999999754
Q ss_pred C------------------------CccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcE
Q 004316 455 S------------------------VKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQT 510 (761)
Q Consensus 455 ~------------------------~~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~ 510 (761)
+ +...+.++++|.|||+|.|||.+-..++.+..+|+.|.+||||+.+..|++|||+
T Consensus 419 kasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqt 498 (753)
T KOG0464|consen 419 KASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQT 498 (753)
T ss_pred chhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCce
Confidence 2 1245778999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhHHHHHHHHHHhhcceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCC---ce
Q 004316 511 IISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAK---FE 587 (761)
Q Consensus 511 il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~---~~ 587 (761)
++.||||||+|++.+|++|+||+++-+++.+|.|||+|.+......+.....|...+...|.+.+.|.+....-+ ++
T Consensus 499 il~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkie 578 (753)
T KOG0464|consen 499 ILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIE 578 (753)
T ss_pred EEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEE
Confidence 999999999999999999999999999999999999999876655444444454445444444444433211112 23
Q ss_pred eee--cccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEe
Q 004316 588 FEN--LLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVIL 665 (761)
Q Consensus 588 ~~~--~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~Ll 665 (761)
|+- ....+ +.+--+.||++|+..||.+|||+|+|+.+|+++|+....|+.-.++..+..++.+|+.+|+.+|.-+|+
T Consensus 579 fe~~es~n~~-~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~ 657 (753)
T KOG0464|consen 579 FELAESANEG-LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLL 657 (753)
T ss_pred eeccccccch-hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 332 11111 122238999999999999999999999999999999999998889999999999999999999999999
Q ss_pred eeeEEEEEeecc-cchhhHHHHHhcCCceeecccccCC--eEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 666 EPVMLVELKVPT-EFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 666 EPi~~~eI~~p~-~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
||+|+++|.+.. +++..|+.+|.+|||++.+.+..++ ...|-|.+|++|+.||+..||.+|+|.|.|.++|.+|+.|
T Consensus 658 eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqam 737 (753)
T KOG0464|consen 658 EPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAM 737 (753)
T ss_pred hhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhc
Confidence 999999998865 8999999999999999999987654 4569999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHh
Q 004316 743 SQDVQLQLVKTH 754 (761)
Q Consensus 743 ~~~~~~~i~~~~ 754 (761)
.++.+.+|+++.
T Consensus 738 n~~dk~~il~kr 749 (753)
T KOG0464|consen 738 NEHDKMEILKKR 749 (753)
T ss_pred ChHHHHHHHHhh
Confidence 999999998654
No 13
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-104 Score=824.60 Aligned_cols=670 Identities=27% Similarity=0.405 Sum_probs=550.1
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee----------
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------- 137 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---------- 137 (761)
...+|||+.+|+|+|||||||+++|...+|.|+.. -.++ ++++|+..+|++|||||++..+++.+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe---~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGE---TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCC---ccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 34689999999999999999999999999988642 1223 78999999999999999999988643
Q ss_pred ------cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC----C
Q 004316 138 ------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG----A 207 (761)
Q Consensus 138 ------~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~----~ 207 (761)
+++.+||||.|||+||.+++..|||+.|+|++|||+.+|++.||+++++|+...++..++|+||+|+.- .
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~ 169 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQL 169 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcC
Confidence 358999999999999999999999999999999999999999999999999999999999999999963 2
Q ss_pred ChHHHHHHHHHHhCC-ce----------eeee-ec----CCCcCccccc----------------eecccc-----eeEE
Q 004316 208 DPWKVLDQARSKLRH-HC----------AAVQ-VP----MGLEDQFQGL----------------VDLVQL-----TAYY 250 (761)
Q Consensus 208 ~~~~~~~~i~~~l~~-~~----------~~~~-~p----i~~~~~~~g~----------------idl~~~-----~~~~ 250 (761)
..++..+.+++.... +. -..+ .| ++.++.++|| +|..++ ...+
T Consensus 170 ~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~ 249 (842)
T KOG0469|consen 170 SQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNF 249 (842)
T ss_pred CHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccc
Confidence 333444444443221 11 1112 12 2335667777 344333 2334
Q ss_pred eeCCCCCeEE------ecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCccee
Q 004316 251 FHGSNGEKIV------TGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI----SSGDLEEAIRRATVARKFIP 320 (761)
Q Consensus 251 ~~~~~g~~~~------~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~----~~~~l~~~l~~~~~~~~~~P 320 (761)
|++...+... -.+.++.|+.+++.+++++.+++.+...+-...||+..++ ...++.-.---...+++|+|
T Consensus 250 f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLP 329 (842)
T KOG0469|consen 250 FNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLP 329 (842)
T ss_pred cCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcc
Confidence 4433322111 1345778999999999999999998776555555543221 12222111112245778999
Q ss_pred EeecccCCCcchHHHHHHHHhhCCCCcccccccccc------cCccceeeccCCCCCCcEEEEEeeeeccC-cc-EEEEE
Q 004316 321 VFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLR 392 (761)
Q Consensus 321 v~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~R 392 (761)
.- +.||++|.-+||||..+|+++.+. +++.+..+..||+++|+++||+|+..... |+ ++|||
T Consensus 330 Aa----------dallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGR 399 (842)
T KOG0469|consen 330 AA----------DALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGR 399 (842)
T ss_pred hH----------HHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEee
Confidence 74 789999999999999999998653 44555667889999999999999998764 55 89999
Q ss_pred EEcceecCCCEEEecCC----CeEE-----ecCcEEEEecCceeecceecCCCEEEEeccc---cccCceeecCCCcccc
Q 004316 393 IYEGVIRKGDFIINVNT----GKKI-----KVPRLVRMHSNEMEDIQEAHAGQIVAVFGVD---CASGDTFTDGSVKYTM 460 (761)
Q Consensus 393 V~sG~l~~g~~v~~~~~----~~~~-----~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~---~~~GdtL~~~~~~~~l 460 (761)
||||++..|+++++... |+++ .|.+..+|||+..++|+.++||||+++.|+| .++| ||+.......+
T Consensus 400 VFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtG-TiTt~e~AHNm 478 (842)
T KOG0469|consen 400 VFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTG-TITTSEAAHNM 478 (842)
T ss_pred eecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccC-ceeehhhhccc
Confidence 99999999999997654 4443 3667788999999999999999999999993 3556 99888777788
Q ss_pred ccCCCC-CceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-ceeEEEc
Q 004316 461 TSMHVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVG 538 (761)
Q Consensus 461 ~~~~~p-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~~ 538 (761)
..++|. .||++++++++++.|++||.++|++|++.||.+.+.+ +|+||++|.|.||||||||+++|++.| +|.++.+
T Consensus 479 rvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~s 557 (842)
T KOG0469|consen 479 RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKS 557 (842)
T ss_pred eEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecC
Confidence 888887 8999999999999999999999999999999999988 589999999999999999999999999 8999999
Q ss_pred CceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCC-------------------------------------
Q 004316 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 581 (761)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------- 581 (761)
+|.|+||||+.+.+...+..| .+++++++++.++|++++
T Consensus 558 dPvVsYrEtvs~~ss~~~lsK----SpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKI 633 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCLSK----SPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKI 633 (842)
T ss_pred CCeeeeecccccccchhhhcc----CCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhhee
Confidence 999999999998887666544 467788999999998754
Q ss_pred ------CCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCcH--HHHHHHHHHHH
Q 004316 582 ------SPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSE--LAFKMAAIYAF 653 (761)
Q Consensus 582 ------~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~--~~~~~a~~~a~ 653 (761)
..+.|.+.+.+.+-++.++++++|..||+||.++|||+|+.|++|+|.|.|..+|...... +.+...+|+++
T Consensus 634 WCfgPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ 713 (842)
T KOG0469|consen 634 WCFGPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVL 713 (842)
T ss_pred eEeCCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHH
Confidence 0134677788888888899999999999999999999999999999999999998764333 35678999999
Q ss_pred HHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeeccccc--CCeEEEEEEechhhhhchHHHHhhhcCCeEE
Q 004316 654 RQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE--GDDSVITAHVPLNNMFGYSTALRSMTQGKGE 731 (761)
Q Consensus 654 ~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~--~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~ 731 (761)
+.+++.|+|+|+||+|.|||+||++++|.||+.|++|||++.+++.. ..++.|+|++|+.|+|||..+|||-|.|+|.
T Consensus 714 ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAf 793 (842)
T KOG0469|consen 714 YASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAF 793 (842)
T ss_pred HHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccc
Confidence 99999999999999999999999999999999999999999999876 3589999999999999999999999999999
Q ss_pred EEEEeCceecCChhHH------HHHHHHhhhcc
Q 004316 732 FTMEYKEHAPVSQDVQ------LQLVKTHNAGR 758 (761)
Q Consensus 732 ~~~~f~~y~~v~~~~~------~~i~~~~~~~~ 758 (761)
.+|.|+||+++|+|+. .+++.+-|+.+
T Consensus 794 pq~vFdHws~lpgdp~dp~sk~~~iV~~~RKrk 826 (842)
T KOG0469|consen 794 PQMVFDHWSILPGDPLDPTSKPGQIVLATRKRK 826 (842)
T ss_pred cceeeeccccCCCCCCCCCccchHHHHHHHHhc
Confidence 9999999999998874 34555554443
No 14
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.6e-84 Score=743.86 Aligned_cols=452 Identities=31% Similarity=0.512 Sum_probs=412.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
||||+|+||+|||||||+++|++.+|.+.+.+.+.+ +++|+.+.|++||+|+.+....+.|++++++|||||||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 699999999999999999999999999877655543 589999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeecC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPM 231 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 231 (761)
||..++.++++.+|++|+|||+.+|++.||+.+|..+...++|+|+|+||+|+..+++.++++++.+.+....
T Consensus 76 DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g------- 148 (594)
T TIGR01394 76 DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG------- 148 (594)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc-------
Confidence 9999999999999999999999999999999999999999999999999999988887777777766653100
Q ss_pred CCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHH
Q 004316 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (761)
Q Consensus 232 ~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (761)
. +.+
T Consensus 149 ------------------------------------------------------~--------------~~e-------- 152 (594)
T TIGR01394 149 ------------------------------------------------------A--------------DDE-------- 152 (594)
T ss_pred ------------------------------------------------------c--------------ccc--------
Confidence 0 000
Q ss_pred HHhcCcceeEeecccCCCc----------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeee
Q 004316 312 ATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (761)
Q Consensus 312 ~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (761)
...+|++++||++|. |++.||+.|++++|+|. .+.++||+++||+++
T Consensus 153 ----~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~-------------------~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 153 ----QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK-------------------GDLDEPLQMLVTNLD 209 (594)
T ss_pred ----cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC-------------------CCCCCCEEEEEEEEE
Confidence 012689999999996 89999999999999995 356889999999999
Q ss_pred eccC-ccEEEEEEEcceecCCCEEEecCCC---eEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCC
Q 004316 382 EGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSV 456 (761)
Q Consensus 382 ~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~ 456 (761)
++++ |++++|||+||+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.|||||++.|+ ++.+|||||+...
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEV 289 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCc
Confidence 9998 9999999999999999999998763 257999999999999999999999999999999 8999999999988
Q ss_pred ccccccCCCCCceEEEEEEeCCC---CCHhH------HHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHH
Q 004316 457 KYTMTSMHVPEPVMSLAVQPVSK---DSGGQ------FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERI 527 (761)
Q Consensus 457 ~~~l~~~~~p~Pv~~~~iep~~~---~d~~k------l~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL 527 (761)
+..++++.+|+|+++++++|.+. .++.| |.++|.|+.++||+|+++.++++++++|+|+|||||+|++++|
T Consensus 290 ~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~l 369 (594)
T TIGR01394 290 PEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETM 369 (594)
T ss_pred cccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHH
Confidence 88899999999999999999855 44444 9999999999999999999999999999999999999999999
Q ss_pred HhhcceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHH
Q 004316 528 RREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEK 607 (761)
Q Consensus 528 ~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 607 (761)
+++ |+++.+++|+|+||| +.
T Consensus 370 rre-g~e~~~~~P~V~yre-i~---------------------------------------------------------- 389 (594)
T TIGR01394 370 RRE-GFELQVGRPQVIYKE-ID---------------------------------------------------------- 389 (594)
T ss_pred hcc-CceEEEeCCEEEEEe-CC----------------------------------------------------------
Confidence 999 999999999999999 51
Q ss_pred HHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHH
Q 004316 608 GFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDI 687 (761)
Q Consensus 608 g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l 687 (761)
| .|||||++++|.||++|+|+||++|
T Consensus 390 --------g----------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l 415 (594)
T TIGR01394 390 --------G----------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKL 415 (594)
T ss_pred --------C----------------------------------------------eEECCEEEEEEEechHHHHHHHHHH
Confidence 0 5899999999999999999999999
Q ss_pred hcCCceeeccccc-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHH
Q 004316 688 NKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQL 748 (761)
Q Consensus 688 ~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~ 748 (761)
++|||+|++++.. +++..|+|.+|+++|+||.++||++|+|+|+|+++|+||+++|++.+.
T Consensus 416 ~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 416 GKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred HHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 9999999999985 468999999999999999999999999999999999999999987654
No 15
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-86 Score=708.47 Aligned_cols=668 Identities=23% Similarity=0.327 Sum_probs=520.7
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-----cCeE
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQ 141 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~ 141 (761)
.++..+|||+++||-+||||+|.+.|..+++.--.. ..+. -..++|....|++||++|++...++-. +.+.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~-~~e~---~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l 198 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK-NTEA---DLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYL 198 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccc-cccc---cccccccchhhHhcCceEeecceEEEEecCcCceee
Confidence 356789999999999999999999998776621110 0111 146899999999999999999887743 4589
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-------ChH----
Q 004316 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-------DPW---- 210 (761)
Q Consensus 142 i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~-------~~~---- 210 (761)
+|++|||||++|..++..+++.+|++++|||+.+|+..+|+++++++.+.++|+++|+||+|+.-. +..
T Consensus 199 ~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLr 278 (971)
T KOG0468|consen 199 MNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLR 278 (971)
T ss_pred eeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998632 211
Q ss_pred HHHHHHHHHh---CCceeeeeecCCCcCccc---------------------cceeccc-----ceeEEeeCCCCCeEE-
Q 004316 211 KVLDQARSKL---RHHCAAVQVPMGLEDQFQ---------------------GLVDLVQ-----LTAYYFHGSNGEKIV- 260 (761)
Q Consensus 211 ~~~~~i~~~l---~~~~~~~~~pi~~~~~~~---------------------g~idl~~-----~~~~~~~~~~g~~~~- 260 (761)
.++++++..+ +..-.++--|+..+-+|. |-+|... |...||+..+.+...
T Consensus 279 Hii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk 358 (971)
T KOG0468|consen 279 HIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKK 358 (971)
T ss_pred HHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccC
Confidence 3344444322 222233334443221211 2233322 666777765433222
Q ss_pred --ecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC--CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHH
Q 004316 261 --TGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLL 336 (761)
Q Consensus 261 --~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Ll 336 (761)
....+..|.+|++++.+++..++....++-+...+.+ ..++.++++-..|-.+. ..+-.|++.. .-+.
T Consensus 359 ~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~~------sgfv 430 (971)
T KOG0468|consen 359 PPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGIE------SGFV 430 (971)
T ss_pred CCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccch------hhhh
Confidence 2234668999999999999887765444444444432 34566665433321110 0111223322 3489
Q ss_pred HHHHhhCCCCccccccccccc------CccceeeccCCCCCCcEEEEEeeeeccC--ccEEEEEEEcceecCCCEEEecC
Q 004316 337 DGVLSYLPCPTEVSNYALDQK------NNEEKVILSGNPDGPLVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVN 408 (761)
Q Consensus 337 d~i~~~lPsp~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~V~k~~~~~~--G~l~~~RV~sG~l~~g~~v~~~~ 408 (761)
|++++++|+|.+......+.. +..-..+..|++++|+++.+.|++.... -..+|+||+||+++.|+.|.+..
T Consensus 431 d~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlg 510 (971)
T KOG0468|consen 431 DMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLG 510 (971)
T ss_pred HhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEee
Confidence 999999999998665544331 1222345679999999999999998654 56899999999999999999876
Q ss_pred CC---------eEEecCcEEEEecCceeecceecCCCEEEEeccc--cccCceeecCC---CccccccCCC-CCceEEEE
Q 004316 409 TG---------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVD--CASGDTFTDGS---VKYTMTSMHV-PEPVMSLA 473 (761)
Q Consensus 409 ~~---------~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~GdtL~~~~---~~~~l~~~~~-p~Pv~~~~ 473 (761)
.+ ....|.++++..+++..+|+.|+||+++.|.|++ .....|+++.+ ..+.++++.+ +.||++++
T Consensus 511 eny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKia 590 (971)
T KOG0468|consen 511 ENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVA 590 (971)
T ss_pred ccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEE
Confidence 54 2346889999999999999999999999999994 33345776643 3467777654 58999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-ceeEEEcCceeeEEEeeeccc
Q 004316 474 VQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGKPRVNFREAVTKRA 552 (761)
Q Consensus 474 iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~~~p~V~yrEti~~~~ 552 (761)
++|.++++++||.+||+|.++.+|.+...+ ||+||++|.|.|||.|++++.+||.-| .|++++++|.|.|.||+.+++
T Consensus 591 veP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vets 669 (971)
T KOG0468|consen 591 VEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETS 669 (971)
T ss_pred eccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeeccc
Confidence 999999999999999999999999998887 799999999999999999999999999 799999999999999999887
Q ss_pred eeeeeeecccCCCcceEEEEEEEEeCCCC-------------------------------------------CCCCceee
Q 004316 553 EFDYLHKKQSGGQGQYGRVIGYIEPLPLG-------------------------------------------SPAKFEFE 589 (761)
Q Consensus 553 ~~~~~~~~~~g~~~~~~~v~~~i~P~~~~-------------------------------------------~~~~~~~~ 589 (761)
...+.... ++.-+++++..||++.+ ..++|++.
T Consensus 670 sikcfaet----pnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~ 745 (971)
T KOG0468|consen 670 SIKCFAET----PNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILL 745 (971)
T ss_pred chhhhccC----CCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceee
Confidence 76554433 34446788888888643 11346666
Q ss_pred ecccCCCCCcc----hHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccccC--CCcHHHHHHHHHHHHHHHHHhcCCe
Q 004316 590 NLLVGQAIPSN----FIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAV--DSSELAFKMAAIYAFRQCYAAAKPV 663 (761)
Q Consensus 590 ~~~~~~~~~~~----~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~~~a~~~a~~~a~p~ 663 (761)
+++....+.++ ++++|.+||+|++++||||+||+++|+|+|.|+...+. +-..+....++|++++.|++.|.|+
T Consensus 746 dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPr 825 (971)
T KOG0468|consen 746 DDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPR 825 (971)
T ss_pred cCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchh
Confidence 66665555554 46778999999999999999999999999999876432 2333457789999999999999999
Q ss_pred EeeeeEEEEEeecccchhhHHHHHhcCCceeecccccC--CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceec
Q 004316 664 ILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAP 741 (761)
Q Consensus 664 LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 741 (761)
||||+|.|||++|.+++..|+.+|++|||+|....+.. ....|+|++|+.|+|||.++||-.|+|+|.+++.|.||++
T Consensus 826 LmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~ 905 (971)
T KOG0468|consen 826 LMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRI 905 (971)
T ss_pred hcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhccc
Confidence 99999999999999999999999999999999887664 4788999999999999999999999999999999999999
Q ss_pred CChhHHHHHH
Q 004316 742 VSQDVQLQLV 751 (761)
Q Consensus 742 v~~~~~~~i~ 751 (761)
||+|+.++=|
T Consensus 906 VPGDpLDKsi 915 (971)
T KOG0468|consen 906 VPGDPLDKSI 915 (971)
T ss_pred CCCCcccccc
Confidence 9999987643
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=6.1e-83 Score=729.01 Aligned_cols=452 Identities=31% Similarity=0.495 Sum_probs=410.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++||||+|+||+|||||||+++|++.+|.+.+...++ .+++|+.+.|+++|+|+.+....+.|+++.++||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~-----~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG 77 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ-----ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG 77 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc-----eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCC
Confidence 5799999999999999999999999988876643222 47999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeee
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (761)
|.+|..++.++++.+|++|+|+|+.+|++.||+.+|+.+...++|.|+|+||+|+.++++.+.++++++.+..-.
T Consensus 78 ~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~----- 152 (607)
T PRK10218 78 HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD----- 152 (607)
T ss_pred cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC-----
Confidence 999999999999999999999999999999999999999999999999999999999999888888877763100
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
. ..
T Consensus 153 -------------~---------------------------------------------------------~~------- 155 (607)
T PRK10218 153 -------------A---------------------------------------------------------TD------- 155 (607)
T ss_pred -------------c---------------------------------------------------------cc-------
Confidence 0 00
Q ss_pred HHHHhcCcceeEeecccCCCc----------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEe
Q 004316 310 RRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
...-+||+++||++|. |+..|||.|++++|+|. +++++||.++|||
T Consensus 156 -----~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~-------------------~~~~~Pl~~~V~k 211 (607)
T PRK10218 156 -----EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD-------------------VDLDGPFQMQISQ 211 (607)
T ss_pred -----cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEe
Confidence 0012799999999998 69999999999999995 3578999999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCC-Ce--EEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecC
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT-GK--KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDG 454 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~-~~--~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~ 454 (761)
++++++ |+++++||++|+|+.||.|++.+. ++ .++|++||.+.|.++.++++|.|||||++.|+ ++.+|||||+.
T Consensus 212 ~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~ 291 (607)
T PRK10218 212 LDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDT 291 (607)
T ss_pred eEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecC
Confidence 999998 999999999999999999999876 44 58899999999999999999999999999999 89999999998
Q ss_pred CCccccccCCCCCceEEEEEEeCC---CCCHhHHHH---HHHHHHH---hCCceEEEEcCCCCcEEEEecchhHHHHHHH
Q 004316 455 SVKYTMTSMHVPEPVMSLAVQPVS---KDSGGQFSK---ALNRFQK---EDPTFRVGLDAESGQTIISGMGELHLDIYVE 525 (761)
Q Consensus 455 ~~~~~l~~~~~p~Pv~~~~iep~~---~~d~~kl~~---~L~~L~~---eDPsl~v~~~~etge~il~g~GelHLei~~~ 525 (761)
.++..++.+.+|+|++++++.|++ ..|+.|+.. +|++|.+ +||+|+++.++++++++|+|+|||||+|+++
T Consensus 292 ~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e 371 (607)
T PRK10218 292 QNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIE 371 (607)
T ss_pred CCcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHH
Confidence 888888899999999999999999 789999855 5666666 9999999999999999999999999999999
Q ss_pred HHHhhcceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHH
Q 004316 526 RIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAI 605 (761)
Q Consensus 526 rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v 605 (761)
||+++ |+|+.+++|+|+|||| . +
T Consensus 372 ~lrre-g~e~~~~~P~V~yret--~-----g------------------------------------------------- 394 (607)
T PRK10218 372 NMRRE-GFELAVSRPKVIFREI--D-----G------------------------------------------------- 394 (607)
T ss_pred HHHhC-CceEEEeCCEEEEEEE--C-----C-------------------------------------------------
Confidence 99999 9999999999999998 0 0
Q ss_pred HHHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHH
Q 004316 606 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAG 685 (761)
Q Consensus 606 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~ 685 (761)
+.||||++++|.||++|+|+||+
T Consensus 395 ---------------------------------------------------------~klEPi~~v~i~vP~e~~G~V~~ 417 (607)
T PRK10218 395 ---------------------------------------------------------RKQEPYENVTLDVEEQHQGSVMQ 417 (607)
T ss_pred ---------------------------------------------------------EEeCCeEEEEEEechhhHHHHHH
Confidence 11699999999999999999999
Q ss_pred HHhcCCceeeccccc-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC-hhH
Q 004316 686 DINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS-QDV 746 (761)
Q Consensus 686 ~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~-~~~ 746 (761)
+|++|||++++++.. +++..|+|.+|+++|+||.++|+|+|+|+|+|++.|+||+++| +++
T Consensus 418 ~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 418 ALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred HHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 999999999999985 5789999999999999999999999999999999999999998 554
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.2e-82 Score=731.45 Aligned_cols=459 Identities=31% Similarity=0.513 Sum_probs=406.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-----CeEEE
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQIN 143 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~ 143 (761)
.++||||+|+||+|||||||+++|++.+|.+++.+ .+ .+++|+++.|++||+|+++....+.|+ ++.++
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~---~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ln 77 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MK---AQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILN 77 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cc---cccccCchHHhhcCCcccccEEEEEEEccCCCcEEEE
Confidence 46899999999999999999999999999887531 13 679999999999999999999989886 68999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
|||||||.+|..++.++++.+|++|+|||+++|++.||...|..+...++|+++|+||+|+..++..+..+++.+.++..
T Consensus 78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 78 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID 157 (600)
T ss_pred EEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988999999999999997666555555554443211
Q ss_pred eeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (761)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeec
Q 004316 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (761)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 383 (761)
..+++++||++|.|+++|+++|.+.+|+|. .++++||.++||++++|
T Consensus 158 --------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~-------------------~~~~~pl~~~Vfd~~~d 204 (600)
T PRK05433 158 --------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPK-------------------GDPDAPLKALIFDSWYD 204 (600)
T ss_pred --------------cceEEEEecCCCCCHHHHHHHHHHhCcccc-------------------CCCCCCceEEEEEEEec
Confidence 013788899999999999999999999996 35688999999999999
Q ss_pred cC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe-c---c-ccccCceeecCCCc
Q 004316 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCASGDTFTDGSVK 457 (761)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~~GdtL~~~~~~ 457 (761)
++ |+++++||++|+|++||.|++.+++..++|.+|+.+.+ +..+++++.||||+++. | + ++++||||++..++
T Consensus 205 ~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~ 283 (600)
T PRK05433 205 NYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNP 283 (600)
T ss_pred CCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCc
Confidence 98 99999999999999999999999999999999996655 78899999999998875 4 3 68899999988765
Q ss_pred --cccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhh
Q 004316 458 --YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRRE 530 (761)
Q Consensus 458 --~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~ 530 (761)
..++++.+|+|+++++++|.+.+|+++|.++|++|++|||||+++ ++|++.++.| ||+|||||+++||+++
T Consensus 284 ~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e 361 (600)
T PRK05433 284 AEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLERE 361 (600)
T ss_pred cccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHh
Confidence 478888999999999999999999999999999999999999986 6899999999 9999999999999999
Q ss_pred cceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHH
Q 004316 531 YKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFK 610 (761)
Q Consensus 531 f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 610 (761)
||+++.+++|+|+||||+.+. . .+.|.|
T Consensus 362 ~~~~v~~~~P~V~Yreti~~g-------------~-------------------~~~~~~-------------------- 389 (600)
T PRK05433 362 FDLDLITTAPSVVYEVTLTDG-------------E-------------------VIEVDN-------------------- 389 (600)
T ss_pred hCceEEEecCEEEEEEEEeCC-------------c-------------------EEEEEC--------------------
Confidence 999999999999999998751 0 111111
Q ss_pred HHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcC
Q 004316 611 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 690 (761)
Q Consensus 611 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~R 690 (761)
| .||| ||++.+ .||||||+++|.+|++|+|+||++|++|
T Consensus 390 ------p-~~~p----------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~r 428 (600)
T PRK05433 390 ------P-SKLP----------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEK 428 (600)
T ss_pred ------c-ccCC----------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHc
Confidence 1 1333 344332 8999999999999999999999999999
Q ss_pred CceeecccccCCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 691 KGMIVGNDQEGDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 691 rg~i~~~~~~~~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
||++++++..++...|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 429 RG~~~~~~~~~~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 429 RGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred CCEEeCcEecCCeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 9999999987778999999999999 999999999999999999999999986
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.3e-81 Score=722.09 Aligned_cols=458 Identities=30% Similarity=0.503 Sum_probs=403.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--C---eEEEE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--D---YQINI 144 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~---~~i~l 144 (761)
++||||+|+||+|||||||+++|++.+|.+++. ..+ .+++|+.+.|+++|+|+.+....+.|+ + +.++|
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~---~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~l 74 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMR---EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNL 74 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---ccc---ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEE
Confidence 369999999999999999999999999988653 122 678999999999999999999888874 3 78999
Q ss_pred EeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCce
Q 004316 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 145 iDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (761)
||||||.+|..++.++++.||++|+|+|+++|++.||...|..+...++|+++|+||+|+..++..+..+++.+.++..
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~- 153 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD- 153 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999999999999888999999999999997665544444444433210
Q ss_pred eeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004316 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (761)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (761)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeecc
Q 004316 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (761)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 384 (761)
..+++++||++|.||++|+++|.+++|+|. .++++||.++||++++|+
T Consensus 154 -------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~-------------------~~~~~pl~~~V~~~~~d~ 201 (595)
T TIGR01393 154 -------------ASEAILASAKTGIGIEEILEAIVKRVPPPK-------------------GDPDAPLKALIFDSHYDN 201 (595)
T ss_pred -------------cceEEEeeccCCCCHHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEEEEEeC
Confidence 123788899999999999999999999996 357889999999999999
Q ss_pred C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe-c---c-ccccCceeecCCCc-
Q 004316 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCASGDTFTDGSVK- 457 (761)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~~GdtL~~~~~~- 457 (761)
+ |+++++||++|+|++||.|++.+.++.++|.+|+.+.+.. .+++++.||||+++. | + ++++||||++.+++
T Consensus 202 ~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~ 280 (595)
T TIGR01393 202 YRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPA 280 (595)
T ss_pred CCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcc
Confidence 8 9999999999999999999999999999999999777666 899999999998875 4 4 68899999988765
Q ss_pred -cccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhhc
Q 004316 458 -YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREY 531 (761)
Q Consensus 458 -~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~f 531 (761)
.+++++.+|+|+++++++|.+.+|+++|.++|++|.+|||+|+++ ++|+|.++.| ||+|||||+++||+++|
T Consensus 281 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~re~ 358 (595)
T TIGR01393 281 KEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREF 358 (595)
T ss_pred ccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHHHh
Confidence 367888999999999999999999999999999999999999987 5899988885 99999999999999999
Q ss_pred ceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHH
Q 004316 532 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 611 (761)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 611 (761)
|+++.+++|+|+||||+.+ | + .+. |.|
T Consensus 359 ~~~v~~~~P~V~Yreti~~-------------g--~----~~~-------------~~~--------------------- 385 (595)
T TIGR01393 359 NLDLITTAPSVIYRVYLTN-------------G--E----VIE-------------VDN--------------------- 385 (595)
T ss_pred CCeeEEecCEEEEEEEecC-------------C--c----EEE-------------EEC---------------------
Confidence 9999999999999999863 1 1 111 111
Q ss_pred HHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCC
Q 004316 612 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 691 (761)
Q Consensus 612 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rr 691 (761)
| .|||+.|. -|.||||||+++|.+|++|+|+||++|++||
T Consensus 386 -----p-~~~p~~~~----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rR 425 (595)
T TIGR01393 386 -----P-SDLPDPGK----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKR 425 (595)
T ss_pred -----c-ccCCCccc----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcC
Confidence 2 37887652 2799999999999999999999999999999
Q ss_pred ceeecccccC-CeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 692 GMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 692 g~i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
|++++++..+ +...|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 426 G~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 426 GVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred CEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 9999999854 58999999999997 999999999999999999999999983
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.5e-79 Score=694.51 Aligned_cols=450 Identities=29% Similarity=0.508 Sum_probs=409.6
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC-cccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
.+++|||+|+||+|+|||||+++|++.+|.+.+.|.++++. ....++|+++.|++||+|+......+.|+++.++||||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 35899999999999999999999999999999998887542 12456899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|+|+++|++.+++.+|+.+...++|+++|+||+|+.++++.+.++++++.|+..+.++
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
+||++.+..|.|++|++.++++.|....|.. .++.+.+++.||++|++|+++..+ +++.+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~~ 226 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLRE 226 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHHH
Confidence 9999999999999999999999996433321 134567889999999999998755 66666
Q ss_pred HH-----------HHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEE
Q 004316 308 AI-----------RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (761)
Q Consensus 308 ~l-----------~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (761)
.+ ++++..+.++|||||||++|.||+.|||+|++++|+|.++... .....+ .+.||+|+
T Consensus 227 ~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~-~~~~~~~~ 296 (526)
T PRK00741 227 ELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------EREVEP-TEEKFSGF 296 (526)
T ss_pred HHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------ceeecC-CCCceEEE
Confidence 66 8999999999999999999999999999999999999754321 011112 45679999
Q ss_pred EEeeee---ccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCcee
Q 004316 377 AFKLEE---GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTF 451 (761)
Q Consensus 377 V~k~~~---~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL 451 (761)
|||+.+ +++ |+++|+|||||++++|+.|+|.++++.+++++++.++|.+++++++|.||||+++.|+ ++++||||
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL 376 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTF 376 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCc
Confidence 999995 446 9999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ecCCCccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc
Q 004316 452 TDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY 531 (761)
Q Consensus 452 ~~~~~~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f 531 (761)
++.. +..++++.+|+|+++++|+|+++.|++||.+||++|++||| +++..|++|||++|+|||||||||+++||+++|
T Consensus 377 ~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey 454 (526)
T PRK00741 377 TQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEY 454 (526)
T ss_pred cCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 9866 66778889999999999999999999999999999999995 999999999999999999999999999999999
Q ss_pred ceeEEEcCceeeEEEeeec
Q 004316 532 KVDATVGKPRVNFREAVTK 550 (761)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~ 550 (761)
|+++.+++|.|++-.-|..
T Consensus 455 ~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 455 NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred CCEEEEecCCccEEEEEeC
Confidence 9999999999999887753
No 20
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-79 Score=672.58 Aligned_cols=644 Identities=24% Similarity=0.372 Sum_probs=484.5
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
++.+.||||++++|+|||||||++.|+...|.|+.. ..++ -+++|+.++|+.||||++++.++...+++.+||||
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~r--lagk---irfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSR--LAGK---IRFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechh--hccc---eeeccccchhhhhceeeeccccccccCceEEEEec
Confidence 445789999999999999999999999999988763 4444 77999999999999999999999888999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC----CCChHH-------HHHH
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----GADPWK-------VLDQ 215 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~----~~~~~~-------~~~~ 215 (761)
+|||+||.+++..|.+.+|+|+++||+.+|+..||..+++|+...+..+++|+||||+. ...+.+ .+++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999964 234443 3444
Q ss_pred HHHHhCCceeeeeecCCCcCccccceec------ccceeEEeeCCCCCeEEecCCC------------------------
Q 004316 216 ARSKLRHHCAAVQVPMGLEDQFQGLVDL------VQLTAYYFHGSNGEKIVTGEVP------------------------ 265 (761)
Q Consensus 216 i~~~l~~~~~~~~~pi~~~~~~~g~idl------~~~~~~~~~~~~g~~~~~~~i~------------------------ 265 (761)
++...|... .|++.+ +.....+|++.+|+.++.+.+.
T Consensus 159 vn~~i~~~~-------------~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al 225 (887)
T KOG0467|consen 159 VNGVIGQFL-------------GGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAAL 225 (887)
T ss_pred hhhHHHHhh-------------cchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhh
Confidence 444433110 111110 0122345555555554443321
Q ss_pred ---------------------------hhhHHHHHHHHHHHHH-HHhcCCHHHHHHHhcC--CCCChhHHHHHHHHHHhc
Q 004316 266 ---------------------------ADMETFVAEKRRELIE-LVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVA 315 (761)
Q Consensus 266 ---------------------------~~~~~~~~~~~~~l~e-~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~ 315 (761)
+-|.+++.+..-.+.+ .+...|.+.+++.... ..+-..+++..+. ..+
T Consensus 226 ~k~lwgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im 303 (887)
T KOG0467|consen 226 LKFLWGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIM 303 (887)
T ss_pred hhhhccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHH
Confidence 1233333333333333 2222333444444432 2334444443333 346
Q ss_pred CcceeEeecccCCCcchHHHHHHHHhhCCCCccccccccc---cc------CccceeeccCCCCCCcEEEEEeeeecc--
Q 004316 316 RKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD---QK------NNEEKVILSGNPDGPLVALAFKLEEGR-- 384 (761)
Q Consensus 316 ~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~---~~------~~~~~~~~~~~~~~p~~~~V~k~~~~~-- 384 (761)
..|+|+- +..+-.++.++|+|.+.+..+.. .. .........|+.++|..+||.|+...+
T Consensus 304 ~~wLPls----------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k 373 (887)
T KOG0467|consen 304 STWLPLS----------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLK 373 (887)
T ss_pred Hhhcccc----------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchh
Confidence 7899984 45666777999999987765432 11 111233456889999999999998865
Q ss_pred ---Cc-cEEEEEEEcceecCCCEEEecCC-------CeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceee
Q 004316 385 ---FG-QLTYLRIYEGVIRKGDFIINVNT-------GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFT 452 (761)
Q Consensus 385 ---~G-~l~~~RV~sG~l~~g~~v~~~~~-------~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~ 452 (761)
.. .++++|||||+++.||.++.... -...+|.++|+++|++..+.+++++||+++|.|- ......|||
T Consensus 374 ~lp~~~l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~ 453 (887)
T KOG0467|consen 374 YLPQSRLLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLC 453 (887)
T ss_pred hCchhhheeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceec
Confidence 23 58999999999999999998765 1345899999999999999999999999999984 223344898
Q ss_pred cCCCccccccCCC-CCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc
Q 004316 453 DGSVKYTMTSMHV-PEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY 531 (761)
Q Consensus 453 ~~~~~~~l~~~~~-p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f 531 (761)
+.....++....+ -+|.++++|+|.++.++++|.++|+.|.+.||++++.. +++||+++...||+|||.|+.+|++ |
T Consensus 454 s~~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-f 531 (887)
T KOG0467|consen 454 SKVPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-F 531 (887)
T ss_pred ccCCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-h
Confidence 8754433333333 48999999999999999999999999999999999987 5899999999999999999999999 8
Q ss_pred -ceeEEEcCceeeEEEeeeccceeeeeeecccCCCc------ceEEEEEEEEeCCCC-----------------------
Q 004316 532 -KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQG------QYGRVIGYIEPLPLG----------------------- 581 (761)
Q Consensus 532 -~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~------~~~~v~~~i~P~~~~----------------------- 581 (761)
++++.+++|.|+||||+.+.+... ..+.=|.. .-..+.+++.|+..-
T Consensus 532 a~i~i~vSeP~vpfrET~~e~s~l~---~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~ 608 (887)
T KOG0467|consen 532 AKIEISVSEPLVPFRETIIEDSDLL---ANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQV 608 (887)
T ss_pred hceEEEecCCccchhhhccccchhh---hhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccc
Confidence 899999999999999995432211 00000000 001122222222100
Q ss_pred ----------------------------------------------CCCCceeeecccCCC---------CCcchHHHHH
Q 004316 582 ----------------------------------------------SPAKFEFENLLVGQA---------IPSNFIPAIE 606 (761)
Q Consensus 582 ----------------------------------------------~~~~~~~~~~~~~~~---------~~~~~~~~v~ 606 (761)
..++|+|.+....-. +.+ +-+++.
T Consensus 609 ~i~e~~k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~iv 687 (887)
T KOG0467|consen 609 PIDESQKGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIV 687 (887)
T ss_pred cccccccccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHh
Confidence 011233332211110 112 458899
Q ss_pred HHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCC---cHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhH
Q 004316 607 KGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDS---SELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSV 683 (761)
Q Consensus 607 ~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v 683 (761)
+||+.++..||||.||+.+++|.+..+...+.++ ..+....|++.+||+|+++..|+|+.|||.|+|++..+++|+|
T Consensus 688 sgfql~~~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkv 767 (887)
T KOG0467|consen 688 SGFQLATSSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKV 767 (887)
T ss_pred hhHhhhhccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhH
Confidence 9999999999999999999999999854443332 1146788999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeecccccC--CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhH
Q 004316 684 AGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDV 746 (761)
Q Consensus 684 ~~~l~~Rrg~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 746 (761)
|.+|++|+|+|+++++.+ +.|.|+|++|+.|+|||+.++|..|+|.|+.++.|+||+.++.|+
T Consensus 768 YAVlskR~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 768 YAVLSKRHGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred HhhhhhhcchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCC
Confidence 999999999999999874 689999999999999999999999999999999999999998854
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.4e-76 Score=668.59 Aligned_cols=449 Identities=29% Similarity=0.497 Sum_probs=397.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccC-CcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGR-DGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
..++|||+|+||+|+|||||+++|++.+|.+.+.|.++++ ....+++|+++.|++||+|+.+....++|++++++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 4689999999999999999999999999999998888743 223578999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|||+..|+..++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEec------CCChh----hHHHHHHHHHHHHHHHhcCCHHHHHHHhcC
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTG------EVPAD----METFVAEKRRELIELVSEVDDKLGDMFLSD 297 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~------~i~~~----~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 297 (761)
++||+.+..|.|++|++.++.++|....|...... +.|.. ..+.+.++|+++ |.+++.++++
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~~------- 239 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNEF------- 239 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcccc-------
Confidence 99999999999999999999999965444433322 11211 123445566666 7777666532
Q ss_pred CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEE
Q 004316 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALA 377 (761)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 377 (761)
+ ++++..++++|||||||++|.||+.|||+|++++|+|.++... .....+ .++||+++|
T Consensus 240 ---~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~---------~~~~~~-~~~~~~~~V 298 (527)
T TIGR00503 240 ---D--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD---------TRTVEP-TEEKFSGFV 298 (527)
T ss_pred ---C--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC---------ceecCC-CCCCeeEEE
Confidence 2 3566788999999999999999999999999999999864321 011222 567899999
Q ss_pred Eeeee--cc-C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceee
Q 004316 378 FKLEE--GR-F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFT 452 (761)
Q Consensus 378 ~k~~~--~~-~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~ 452 (761)
||+.. || + |+++|+|||||+|++|++|+|.++|+++++++++.++|.+++++++|.|||||++.|+ ++++|||||
T Consensus 299 FK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 299 FKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEec
Confidence 99998 85 6 9999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred cCCCccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcc
Q 004316 453 DGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYK 532 (761)
Q Consensus 453 ~~~~~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~ 532 (761)
+.. +..++++.+|+|+++++|+|+++.|++||.+||++|++||| +++..|++|+|++|+|||||||||+++||+++||
T Consensus 379 ~~~-~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~ 456 (527)
T TIGR00503 379 QGE-KIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYN 456 (527)
T ss_pred CCC-ceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhC
Confidence 844 66778888999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred eeEEEcCceeeEEEee
Q 004316 533 VDATVGKPRVNFREAV 548 (761)
Q Consensus 533 v~v~~~~p~V~yrEti 548 (761)
+++.+++|.|+.--=+
T Consensus 457 v~v~~~~~~v~~~rw~ 472 (527)
T TIGR00503 457 VEARYEPVNVATARWV 472 (527)
T ss_pred CeEEEeCCCceEEEEE
Confidence 9999999999865433
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-75 Score=617.54 Aligned_cols=464 Identities=30% Similarity=0.483 Sum_probs=399.0
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC---eEEE
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQIN 143 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~ 143 (761)
.+.++|||++||+|+|||||||.++||..+|.+++ .....+++|..+.||+||||+++...++.|++ +.+|
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~------~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLN 128 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDN------NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLN 128 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCC------CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEE
Confidence 34589999999999999999999999999998754 22237799999999999999999999999998 9999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
|||||||+||..|+.+.+..||||||||||.+|+++||...+..|.++|+.+|.|+||+|++.++++++..++.+.|+..
T Consensus 129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 129 LIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred eecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888654
Q ss_pred eeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (761)
+.
T Consensus 209 ~~------------------------------------------------------------------------------ 210 (650)
T KOG0462|consen 209 PA------------------------------------------------------------------------------ 210 (650)
T ss_pred cc------------------------------------------------------------------------------
Confidence 32
Q ss_pred HHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeec
Q 004316 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (761)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 383 (761)
+++.+||++|.|++.+|++|++++|+|. ...++||.|++|.+++|
T Consensus 211 ----------------~~i~vSAK~G~~v~~lL~AII~rVPpP~-------------------~~~d~plr~Lifds~yD 255 (650)
T KOG0462|consen 211 ----------------EVIYVSAKTGLNVEELLEAIIRRVPPPK-------------------GIRDAPLRMLIFDSEYD 255 (650)
T ss_pred ----------------ceEEEEeccCccHHHHHHHHHhhCCCCC-------------------CCCCcchHHHhhhhhhh
Confidence 3778899999999999999999999997 45789999999999999
Q ss_pred cC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCc--eeecceecCCCEEEEec-c-ccccCceeecCCC--
Q 004316 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNE--MEDIQEAHAGQIVAVFG-V-DCASGDTFTDGSV-- 456 (761)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~--~~~v~~a~aGdIv~i~g-l-~~~~GdtL~~~~~-- 456 (761)
.+ |.|+++||..|.+++||+|....+++...++.+-+|..+. ..+++...+|+|++-.+ + +..+|||++....
T Consensus 256 ~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~ 335 (650)
T KOG0462|consen 256 EYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTK 335 (650)
T ss_pred hhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCc
Confidence 98 9999999999999999999999988887777666655433 33344455566666555 5 7899999987663
Q ss_pred -ccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCC----cEEEEecchhHHHHHHHHHHhhc
Q 004316 457 -KYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESG----QTIISGMGELHLDIYVERIRREY 531 (761)
Q Consensus 457 -~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etg----e~il~g~GelHLei~~~rL~~~f 531 (761)
...++..+.+.|++++...|.+.+|...|.+++.+|+.+|+++.+..+ .++ -+.+.++|.|||||+++||++||
T Consensus 336 ~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~Ey 414 (650)
T KOG0462|consen 336 AVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLEREY 414 (650)
T ss_pred ccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHhc
Confidence 245666777899999999999999999999999999999999999874 444 36789999999999999999999
Q ss_pred ceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHH
Q 004316 532 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 611 (761)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 611 (761)
|.++.+++|.|+||-...+..+. .+ ..| ..|-+
T Consensus 415 g~elivt~PtV~Yr~~~~~~~~~-----------------~i-~np--------~~fp~--------------------- 447 (650)
T KOG0462|consen 415 GAELIVTPPTVPYRVVYSNGDEI-----------------LI-SNP--------ALFPD--------------------- 447 (650)
T ss_pred CceeeecCCcceEEEEecCCcee-----------------ee-cCh--------hhCCC---------------------
Confidence 99999999999999644322110 00 011 00100
Q ss_pred HHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCC
Q 004316 612 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 691 (761)
Q Consensus 612 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rr 691 (761)
.+.+ ...|||+..++|.+|+||+|.|+..++.||
T Consensus 448 -----------------------~~~v-----------------------~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rR 481 (650)
T KOG0462|consen 448 -----------------------PSDV-----------------------KEFLEPYVEATIITPDEYVGAVIELCSERR 481 (650)
T ss_pred -----------------------cccc-----------------------hhhcCceEEEEEECcHHHHHHHHHHHHHhh
Confidence 0011 157899999999999999999999999999
Q ss_pred ceeeccccc-CCeEEEEEEechhhhhc-hHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 692 GMIVGNDQE-GDDSVITAHVPLNNMFG-YSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 692 g~i~~~~~~-~~~~~i~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
|...++... +.+..++.++|++|+.| |...|.|.|+|+|+|.++|++|++-+
T Consensus 482 geq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~sd 535 (650)
T KOG0462|consen 482 GEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQASD 535 (650)
T ss_pred hheecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeeccccccccc
Confidence 999999876 66889999999999998 99999999999999999999999543
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.6e-74 Score=602.13 Aligned_cols=461 Identities=30% Similarity=0.512 Sum_probs=405.6
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-----eEE
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-----YQI 142 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i 142 (761)
+.++|||++||+|.|||||||.+||+..+|.++.. .-..+++|.++.||+||||++.....+.|+. |.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R------em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~l 78 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER------EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVL 78 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChH------HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEE
Confidence 45789999999999999999999999999987652 1226799999999999999999999888753 899
Q ss_pred EEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCC
Q 004316 143 NIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRH 222 (761)
Q Consensus 143 ~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 222 (761)
||||||||+||..++.++|..|.||+|||||++|+++||.....+|...++-+|.|+||+|++.++++++.+++.+.+|.
T Consensus 79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGi 158 (603)
T COG0481 79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGI 158 (603)
T ss_pred EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCCh
Q 004316 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (761)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (761)
.+..
T Consensus 159 d~~d---------------------------------------------------------------------------- 162 (603)
T COG0481 159 DASD---------------------------------------------------------------------------- 162 (603)
T ss_pred Ccch----------------------------------------------------------------------------
Confidence 5421
Q ss_pred hHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeee
Q 004316 303 GDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE 382 (761)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 382 (761)
.+.+||++|.||+++|++|++.+|+|. .++++||.|++|..++
T Consensus 163 ------------------av~~SAKtG~gI~~iLe~Iv~~iP~P~-------------------g~~~~pLkALifDS~y 205 (603)
T COG0481 163 ------------------AVLVSAKTGIGIEDVLEAIVEKIPPPK-------------------GDPDAPLKALIFDSWY 205 (603)
T ss_pred ------------------heeEecccCCCHHHHHHHHHhhCCCCC-------------------CCCCCcceEEEEeccc
Confidence 345699999999999999999999997 6789999999999999
Q ss_pred ccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE-ecc----ccccCceeecCCC
Q 004316 383 GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV-FGV----DCASGDTFTDGSV 456 (761)
Q Consensus 383 ~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i-~gl----~~~~GdtL~~~~~ 456 (761)
|++ |.++++||+.|++++||+|..+.+|++..|.++..+.. ...+.+++.||+++-+ +|+ +++.|||++...+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 998 99999999999999999999999999999999988776 6678999999999874 454 7899999995544
Q ss_pred c--cccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHh
Q 004316 457 K--YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRR 529 (761)
Q Consensus 457 ~--~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~ 529 (761)
+ .++++++-.+|++++.+.|.+..|.+.|.+||.||..+|.+|.++ +||.+-+-.| +|-|||||+++||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 3 567888888999999999999999999999999999999999875 6888776665 699999999999999
Q ss_pred hcceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHH
Q 004316 530 EYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGF 609 (761)
Q Consensus 530 ~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 609 (761)
||++++....|.|.|+-..++..+... . .|.
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g~~~~i-----------------~-NPs------------------------------- 393 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDGEEIEV-----------------D-NPS------------------------------- 393 (603)
T ss_pred hhCcceEecCCceEEEEEEcCCcEEEe-----------------c-ChH-------------------------------
Confidence 999999999999999976543211100 0 010
Q ss_pred HHHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhc
Q 004316 610 KEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINK 689 (761)
Q Consensus 610 ~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~ 689 (761)
.+| +-+. --.+.||+.++.|.+|++|+|.||..++.
T Consensus 394 ----------~~P----------------~~~~------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq~ 429 (603)
T COG0481 394 ----------DLP----------------DPNK------------------IEEIEEPYVKATIITPQEYLGNVMELCQE 429 (603)
T ss_pred ----------hCC----------------Chhh------------------hheeeCceeEEEEeCcHHHHHHHHHHHHH
Confidence 011 0000 01688999999999999999999999999
Q ss_pred CCceeecccccC-CeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 690 RKGMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 690 Rrg~i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
+||...+++.-+ .+..+...+|++|+ ++|.+.|+|.|+|+|||.++|.+|++-+
T Consensus 430 kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~ 485 (603)
T COG0481 430 KRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD 485 (603)
T ss_pred hcCceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccc
Confidence 999999999876 78899999999998 7999999999999999999999998754
No 24
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-72 Score=582.84 Aligned_cols=453 Identities=32% Similarity=0.514 Sum_probs=407.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.++||||||+|+|||||||++.||.++|.....+.+... +||+.+.|++|||||-+..+.+.|+++++|++||||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ER-----vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAER-----VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhh-----hcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 479999999999999999999999999998876666654 999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeee
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (761)
|.||-+++++.+...|+++|+|||.+|..+||+.+++.|.+.+++.|+|+||+|+++++++++++++.+.|-.
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~------- 150 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE------- 150 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999888766411
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
+...||.
T Consensus 151 -----------------------------------------------------L~A~deQ-------------------- 157 (603)
T COG1217 151 -----------------------------------------------------LGATDEQ-------------------- 157 (603)
T ss_pred -----------------------------------------------------hCCChhh--------------------
Confidence 0001111
Q ss_pred HHHHhcCcceeEeecccCCCc----------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEe
Q 004316 310 RRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
--+|++..||..|+ .+++|++.|++|+|.|. .+.++||.++|+.
T Consensus 158 -------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-------------------~~~d~PlQ~qvt~ 211 (603)
T COG1217 158 -------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-------------------GDLDEPLQMQVTQ 211 (603)
T ss_pred -------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEe
Confidence 12677777777764 47889999999999996 5789999999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCCC---eEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecC
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDG 454 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~ 454 (761)
..++++ |++..|||++|++|+||.|.....+ +.-||.+++-+.|-++.++++|.||||++|+|+ ++..|||+|+.
T Consensus 212 Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~ 291 (603)
T COG1217 212 LDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDP 291 (603)
T ss_pred eccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCC
Confidence 999999 9999999999999999999877654 346899999999999999999999999999999 99999999999
Q ss_pred CCccccccCCCCCceEEEEEEeCCCCC---------HhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHH
Q 004316 455 SVKYTMTSMHVPEPVMSLAVQPVSKDS---------GGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVE 525 (761)
Q Consensus 455 ~~~~~l~~~~~p~Pv~~~~iep~~~~d---------~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~ 525 (761)
.++..++.+.+-+|.+++.+..++..- -.++.+.|.+-.+.+-+|+|+--++-..+.++|.|||||-|+++
T Consensus 292 ~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE 371 (603)
T COG1217 292 DNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIE 371 (603)
T ss_pred CCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHH
Confidence 999999999999999999998776522 24588889998999999999865555889999999999999999
Q ss_pred HHHhhcceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHH
Q 004316 526 RIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAI 605 (761)
Q Consensus 526 rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v 605 (761)
.+||| |.|+.+|.|+|.||| +-
T Consensus 372 ~MRRE-GfEl~VsrP~Vi~ke-id-------------------------------------------------------- 393 (603)
T COG1217 372 NMRRE-GFELQVSRPEVIIKE-ID-------------------------------------------------------- 393 (603)
T ss_pred Hhhhc-ceEEEecCceEEEEe-cC--------------------------------------------------------
Confidence 99999 999999999999998 21
Q ss_pred HHHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHH
Q 004316 606 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAG 685 (761)
Q Consensus 606 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~ 685 (761)
| .++|||-.+.|.||++|.|.|+.
T Consensus 394 ---------------------------G-----------------------------~~~EP~E~v~iDv~ee~~G~Vie 417 (603)
T COG1217 394 ---------------------------G-----------------------------VKCEPFEEVTIDVPEEHQGAVIE 417 (603)
T ss_pred ---------------------------C-----------------------------cCcCcceeEEecCchhhhhHHHH
Confidence 0 45689999999999999999999
Q ss_pred HHhcCCceeeccccc-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHH
Q 004316 686 DINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQ 747 (761)
Q Consensus 686 ~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~ 747 (761)
.|..|+|...+|.+. +|+..+...+|.+-+.||.+++-++|+|.|.....|+||+|+.+++.
T Consensus 418 ~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~ 480 (603)
T COG1217 418 KLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIG 480 (603)
T ss_pred HHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccccc
Confidence 999999999999987 57999999999999999999999999999999999999999987654
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-63 Score=518.94 Aligned_cols=448 Identities=27% Similarity=0.504 Sum_probs=373.9
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC-cccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
...+.|++|||.|||+|||||++.||...|+|...|.|.++. ...+.+||++.|++|||++.++...|+|+++.+||+|
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLD 87 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLD 87 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccC
Confidence 346789999999999999999999999999999999998754 4477899999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
||||.||...+.+.|..+|.||.||||..|+++||+.+++-|+..++|++-++||+|+.+.++.+.++++.+.|++.+.|
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAP 167 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcCccccceecccceeEEeeCCCC-CeEE---ecCCC-hhhHHHHH-HHHHHHHHH---HhcCCHHHHHHHhcC
Q 004316 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNG-EKIV---TGEVP-ADMETFVA-EKRRELIEL---VSEVDDKLGDMFLSD 297 (761)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g-~~~~---~~~i~-~~~~~~~~-~~~~~l~e~---~~~~dd~l~e~~l~~ 297 (761)
+.|||+.+..|.|+.|+.+.....|.+..+ +... ...+. .+..+... ..+.++.|. +.+..
T Consensus 168 itWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~---------- 237 (528)
T COG4108 168 ITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAG---------- 237 (528)
T ss_pred ccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhc----------
Confidence 999999999999999999998888866432 1111 11110 11111110 111122111 11111
Q ss_pred CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEE
Q 004316 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALA 377 (761)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 377 (761)
.+.+. .++..+...|||||||++|.||+.+|+.++++.|+|..++... . .. ...+..|.+||
T Consensus 238 ~~Fd~--------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-------~--~v-~p~e~kfsGFV 299 (528)
T COG4108 238 NEFDL--------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-------R--EV-EPTEDKFSGFV 299 (528)
T ss_pred cccCH--------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-------C--cc-cCCCCccceEE
Confidence 11111 2345678899999999999999999999999999998554221 0 01 12344599999
Q ss_pred Eeeee--ccC--ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceee
Q 004316 378 FKLEE--GRF--GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFT 452 (761)
Q Consensus 378 ~k~~~--~~~--G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~ 452 (761)
||+.. ||. .++||.||.||.+.+|+++...++|+..+++.-..+++++++.+++|.||||++|..- ..++||||+
T Consensus 300 FKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t 379 (528)
T COG4108 300 FKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFT 379 (528)
T ss_pred EEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceee
Confidence 99986 453 8899999999999999999999999999999999999999999999999999998877 789999999
Q ss_pred cCCCccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcc
Q 004316 453 DGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYK 532 (761)
Q Consensus 453 ~~~~~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~ 532 (761)
.+ ....+.++..-.|=++..|..+++....+|.++|.+|++|- .+++.....+++.+|...|.||+||+.+||+.||+
T Consensus 380 ~G-e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ 457 (528)
T COG4108 380 EG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEG-AVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYN 457 (528)
T ss_pred cC-ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcC-eeEEEecCCCCCceEEeeeeeehHHHHHHHHhhhC
Confidence 87 55667776655788888888999999999999999999998 55666666789999999999999999999999999
Q ss_pred eeEEEcCceeeEE
Q 004316 533 VDATVGKPRVNFR 545 (761)
Q Consensus 533 v~v~~~~p~V~yr 545 (761)
+++.+.+..+..-
T Consensus 458 ve~~~e~~~~~~a 470 (528)
T COG4108 458 VEAVFEPVNFSTA 470 (528)
T ss_pred CeEEEeeccceEE
Confidence 9998876654443
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.2e-51 Score=431.80 Aligned_cols=270 Identities=59% Similarity=0.951 Sum_probs=262.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
||+|+||+|+|||||+++|++.+|.+.+.+.++++ ++++|+.+.|++||+|+++....+.|++++++|||||||.+|
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG---GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC---ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH
Confidence 79999999999999999999999999998889888 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeecCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 233 (761)
..++.++++.+|++|+|||+..|++.+|..+|+.+...++|+++|+||+|+.++++++.++++++.++..+.+.++|++.
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004316 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (761)
Q Consensus 234 ~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (761)
...|.|+||++.+++|.|...+|......++|+++.+.+.++|.+|+|.+++.||+|||+||++++++.+++.+.+++++
T Consensus 158 ~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~ 237 (270)
T cd01886 158 EDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGT 237 (270)
T ss_pred CCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999955467778889999999999999999999999999999999999999999999999999999
Q ss_pred hcCcceeEeecccCCCcchHHHHHHHHhhCCCC
Q 004316 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (761)
Q Consensus 314 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp 346 (761)
..+.++|||||||.++.|++.|||.|.+++|+|
T Consensus 238 ~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 238 IANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=2.1e-47 Score=399.58 Aligned_cols=265 Identities=33% Similarity=0.559 Sum_probs=244.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC-cccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++|||+|+||+|+|||||+++|++.+|.+.+.|.+++.. .-.+++|+.+.|++||+|+......++|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 479999999999999999999999999999998887310 1166899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeee
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (761)
|.+|..++..+++.+|++|+|+|++.+++.++..+|+.+...++|+++|+||+|+.++++.+.++++++.++.++.++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred cCCCcCccccceecccceeEEeeCCCCC-eEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGE-KIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~-~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (761)
|++.+..|.|++|++.+++|.|....|. .....++|+++. |.+++.||+|||+|+++.+++.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 9999999999999999999999433333 455566776654 7889999999999999999999999999
Q ss_pred HHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCC
Q 004316 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (761)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp 346 (761)
+++++..+.++|||||||.+|.||+.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=7.2e-45 Score=383.31 Aligned_cols=268 Identities=36% Similarity=0.562 Sum_probs=256.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
||+++||+|+|||||+++|++..|.+.+.+++..+ .+++|+.+.|+++++|+......+.|++++++|||||||.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG---TTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC---cccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH
Confidence 79999999999999999999999999888888877 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeecCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 233 (761)
..++..+++.+|++|+|+|+..+...++..+|+++...++|.++|+||+|+.++++.+.++++++.++.++.++++|++.
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004316 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (761)
Q Consensus 234 ~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (761)
+..|.|++|++.++++.|.+ |+.....++|+++.+.+.++|.+|+|.+++.||+|||+||++++++.+++.+.+++++
T Consensus 158 ~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~ 235 (268)
T cd04170 158 GDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRAL 235 (268)
T ss_pred CCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999965 3335667899999999999999999999999999999999999999999999999999
Q ss_pred hcCcceeEeecccCCCcchHHHHHHHHhhCCCC
Q 004316 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (761)
Q Consensus 314 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp 346 (761)
..+.++|||||||+++.|++.|++++.+++|+|
T Consensus 236 ~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 236 RAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=7.9e-44 Score=366.64 Aligned_cols=237 Identities=43% Similarity=0.687 Sum_probs=222.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
||+++||+|+|||||+++|++.+|.+.+.|+++++ .+++|+.+.|++||+|+......+.|++++++|||||||.+|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~---~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG---TTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC---cccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch
Confidence 79999999999999999999999999999989888 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeecCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 233 (761)
..++..+++.+|++|+|+|+.+|++.++..+|+.+...++|+++|+||+|+.++++.+.++++++.++.+++++|+|+
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~-- 155 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG-- 155 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004316 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (761)
Q Consensus 234 ~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (761)
+++.. + .. .+.+.+|+|.+++.||+|||+||++++++.+++.+.+++++
T Consensus 156 ------~~~~~------~--------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~ 204 (237)
T cd04168 156 ------LAPNI------C--------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARI 204 (237)
T ss_pred ------Eeeee------e--------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 22210 0 01 12358899999999999999999999999999999999999
Q ss_pred hcCcceeEeecccCCCcchHHHHHHHHhhCCCC
Q 004316 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (761)
Q Consensus 314 ~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp 346 (761)
..++++|||||||.++.|++.|||+|++++|+|
T Consensus 205 ~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 205 AKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 30
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-36 Score=318.00 Aligned_cols=278 Identities=26% Similarity=0.318 Sum_probs=223.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee--------e--eeccCCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI--------H--EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~--------~--~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+...|++++||+|||||||+.+|||..|.++.. . .-...+.+.|++|..++||+||+|++.+...|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456799999999999999999999999999762 1 112234679999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHH
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWK 211 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~ 211 (761)
+.++|+|||||.||..++..+..+||+|||||||..| +..||+++.-+++..|+.. |+++||||....+ ++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd-e~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD-EE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC-HH
Confidence 9999999999999999999999999999999999998 8999999999999999985 8888999998744 23
Q ss_pred HHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q 004316 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (761)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (761)
.++++.+.++.
T Consensus 164 rf~ei~~~v~~--------------------------------------------------------------------- 174 (428)
T COG5256 164 RFEEIVSEVSK--------------------------------------------------------------------- 174 (428)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 33333332210
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcC-cceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccC
Q 004316 292 DMFLSDEPISSGDLEEAIRRATVAR-KFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKN 358 (761)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~-~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~ 358 (761)
+.+.+... +-+|++.+||++|.|+.. ||++|. .+..|.
T Consensus 175 -----------------l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~----------- 225 (428)
T COG5256 175 -----------------LLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPE----------- 225 (428)
T ss_pred -----------------HHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCC-----------
Confidence 00000000 113455558888888753 666664 444443
Q ss_pred ccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCE
Q 004316 359 NEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQI 437 (761)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdI 437 (761)
...+.||++.|.+++.... |++..|||.+|.|++||+|++.+.+..-+|+.+. ...++++.+.|||.
T Consensus 226 --------~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie----~~~~~~~~a~~GD~ 293 (428)
T COG5256 226 --------RPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIE----MHHEEISQAEPGDN 293 (428)
T ss_pred --------CCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeee----ecccccccCCCCCe
Confidence 2368999999999998555 9999999999999999999999999888888886 23778999999999
Q ss_pred EE--Eecc---ccccCceeecCCCcc
Q 004316 438 VA--VFGV---DCASGDTFTDGSVKY 458 (761)
Q Consensus 438 v~--i~gl---~~~~GdtL~~~~~~~ 458 (761)
+. ++|+ |++.||++++..+++
T Consensus 294 i~~~vrgv~~~dI~~Gdv~~~~~n~~ 319 (428)
T COG5256 294 VGFNVRGVEKNDIRRGDVIGHSDNPP 319 (428)
T ss_pred EEEEecCCchhccCCccEeccCCCCc
Confidence 88 6776 799999999877654
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.8e-36 Score=334.34 Aligned_cols=272 Identities=26% Similarity=0.366 Sum_probs=218.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.+..+||+++||+|||||||+++|++..+.+... .... ...+|+.++|+++|+|+++....+.+++.+++|+|||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~--~~~~---~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP 83 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA--KAKK---YDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc--cccc---cccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC
Confidence 4577999999999999999999999887766421 1111 3478999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
||.+|...+.+++..+|++++|||+.+|+..||++++.++...++| +|+++||||+... .+..+.+.+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~--------- 152 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVEL--------- 152 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999999999 5688999998532 111111111
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
++..
T Consensus 153 ----------------------------------------------------------------------------~l~~ 156 (409)
T CHL00071 153 ----------------------------------------------------------------------------EVRE 156 (409)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHHHHhcCcceeEeecccCCCc------------------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCC
Q 004316 308 AIRRATVARKFIPVFMGSAFKNK------------------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNP 369 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~------------------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~ 369 (761)
.++..-.....+|++++||++|. |+..|+++|.+++|.|. .+.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~-------------------~~~ 217 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPE-------------------RDT 217 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCC-------------------CCC
Confidence 11111111224788888988885 46789999999998875 345
Q ss_pred CCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecC--CCeEEecCcEEEEecCceeecceecCCCEEEE--ecc-
Q 004316 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVN--TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV- 443 (761)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl- 443 (761)
+.||.++|++++.+++ |++++|||++|+++.||.|.+.+ .+...+|+.|... ..++++|.|||+|++ .|+
T Consensus 218 ~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~ 293 (409)
T CHL00071 218 DKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQ 293 (409)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcCCC
Confidence 7899999999999987 99999999999999999998764 3456788888743 247899999999964 476
Q ss_pred --ccccCceeecCC
Q 004316 444 --DCASGDTFTDGS 455 (761)
Q Consensus 444 --~~~~GdtL~~~~ 455 (761)
+++.||+|++.+
T Consensus 294 ~~~i~~G~vl~~~~ 307 (409)
T CHL00071 294 KEDIERGMVLAKPG 307 (409)
T ss_pred HHHcCCeEEEecCC
Confidence 588999999865
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.8e-36 Score=331.96 Aligned_cols=272 Identities=27% Similarity=0.353 Sum_probs=217.2
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.++.+||+++||+|||||||+++|+...+.. +..+. ...+.+|..++|+++|+|++.....+.++++.++|||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~---g~~~~--~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtP 83 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAER---GLNQA--KDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCP 83 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhh---ccccc--cchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECC
Confidence 4568999999999999999999998543221 11110 012369999999999999999988888889999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
||.+|...+.+++..+|++++|||+.+|+..||++++.++...++| +|+++||||+... ++..+.+.+
T Consensus 84 Gh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~--------- 152 (394)
T PRK12736 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEM--------- 152 (394)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999999999 4788999998521 111111110
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
++.+
T Consensus 153 ----------------------------------------------------------------------------~i~~ 156 (394)
T PRK12736 153 ----------------------------------------------------------------------------EVRE 156 (394)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHHHHhcCcceeEeecccCCCc--------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEe
Q 004316 308 AIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
.++........+|++++||++|. ++..|++.+.+++|.|. .+.++||.++|++
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~-------------------~~~~~p~r~~I~~ 217 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE-------------------RDTDKPFLMPVED 217 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEE
Confidence 11111111234789999999983 68999999999999774 3457899999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCC--CeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccCcee
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTF 451 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL 451 (761)
++.+++ |++++|||++|+|+.||.|++.+. +...+|+.|.. ...++++|.|||++++ .|+ +++.|++|
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 999998 999999999999999999998876 55678888874 2468899999999965 787 58899999
Q ss_pred ecCC
Q 004316 452 TDGS 455 (761)
Q Consensus 452 ~~~~ 455 (761)
++.+
T Consensus 294 ~~~~ 297 (394)
T PRK12736 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9865
No 33
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=7.4e-36 Score=333.68 Aligned_cols=273 Identities=25% Similarity=0.295 Sum_probs=221.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee---------eeccC-CcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------EVRGR-DGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~---------~v~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+...||+++||+|+|||||+++|++..|.+++.+ .+..+ ..+.+++|+.++|++||+|++.....++|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4567999999999999999999999999887643 11222 2345789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-------chhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC---
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVPR-LAFINKLDRMGAD--- 208 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~--- 208 (761)
+.++|||||||.+|..++..++..+|+||+|||+.+|+ ..||+++|.++..+++|. |+++||||+...+
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 489999999999999996 6899999965432
Q ss_pred --hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC
Q 004316 209 --PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (761)
Q Consensus 209 --~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (761)
++++.+++.+.|+...
T Consensus 165 ~~~~~i~~~i~~~l~~~g-------------------------------------------------------------- 182 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVG-------------------------------------------------------------- 182 (446)
T ss_pred HHHHHHHHHHHHHHHhcC--------------------------------------------------------------
Confidence 2233333333321100
Q ss_pred CHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchH------------HHHHHHHhhCCCCcccccccc
Q 004316 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYAL 354 (761)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsp~~~~~~~~ 354 (761)
....-+|++.+||++|.|+. .|++.|.. ++.|.
T Consensus 183 ---------------------------~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~-~~~~~------- 227 (446)
T PTZ00141 183 ---------------------------YNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT-LEPPK------- 227 (446)
T ss_pred ---------------------------CCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC-CCCCC-------
Confidence 00012688888999999985 48888754 44443
Q ss_pred cccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceec
Q 004316 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (761)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~ 433 (761)
.+.+.||.++|..++..++ |+++.|||.+|+|+.||+|.+.+.+...+|+.|... ..++++|.
T Consensus 228 ------------~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~ 291 (446)
T PTZ00141 228 ------------RPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH----HEQLAEAV 291 (446)
T ss_pred ------------cCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec----CcccCEEC
Confidence 2356899999999999887 999999999999999999999999988889888742 46799999
Q ss_pred CCCEEEE--ecc---ccccCceeecCC
Q 004316 434 AGQIVAV--FGV---DCASGDTFTDGS 455 (761)
Q Consensus 434 aGdIv~i--~gl---~~~~GdtL~~~~ 455 (761)
|||.+++ .++ +++.|++|++..
T Consensus 292 aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 292 PGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred CCCEEEEEECCCCHHHcCCceEEecCC
Confidence 9999885 454 578999999864
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=8.5e-36 Score=332.91 Aligned_cols=273 Identities=25% Similarity=0.278 Sum_probs=219.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--eec----c----CCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--EVR----G----RDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~--~v~----~----~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+..+||+++||+|+|||||+++||+.+|.+++.+ .++ . ...+.+++|..++|++||+|++.....++|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4678999999999999999999999999887643 111 1 12346789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcc-------hhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC---
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVPR-LAFINKLDRMGAD--- 208 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~--- 208 (761)
+.++|||||||.+|..++..+++.+|+||+|||+.+|.. .||+++|.++...++|. |+++||||+...+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999999842 79999999999999975 7789999986221
Q ss_pred --hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC
Q 004316 209 --PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (761)
Q Consensus 209 --~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (761)
+.+++++++..++..
T Consensus 165 ~~~~~i~~ei~~~l~~~--------------------------------------------------------------- 181 (447)
T PLN00043 165 ARYDEIVKEVSSYLKKV--------------------------------------------------------------- 181 (447)
T ss_pred HHHHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 222333333322110
Q ss_pred CHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchH------------HHHHHHHhhCCCCcccccccc
Q 004316 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYAL 354 (761)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsp~~~~~~~~ 354 (761)
... ..-+|++.+||++|.|+. .|+++|.. +|.|.
T Consensus 182 ------------g~~--------------~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~------- 227 (447)
T PLN00043 182 ------------GYN--------------PDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPK------- 227 (447)
T ss_pred ------------CCC--------------cccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCc-------
Confidence 000 012567778999999984 37888754 55453
Q ss_pred cccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceec
Q 004316 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (761)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~ 433 (761)
.+.+.||.+.|..++..++ |+++.|||.+|++++||.|.+.+.+...+|+.|.. ...++++|.
T Consensus 228 ------------~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~----~~~~v~~a~ 291 (447)
T PLN00043 228 ------------RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEM----HHESLQEAL 291 (447)
T ss_pred ------------cccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEE----CCeEeCEec
Confidence 2457899999999999887 99999999999999999999999988889998874 356899999
Q ss_pred CCCEEEE--ecc---ccccCceeecCC
Q 004316 434 AGQIVAV--FGV---DCASGDTFTDGS 455 (761)
Q Consensus 434 aGdIv~i--~gl---~~~~GdtL~~~~ 455 (761)
|||.+++ .++ +++.|++|++..
T Consensus 292 aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 292 PGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred CCCeEEEEECCCCHhhCCCccEEccCC
Confidence 9999884 555 578999999863
No 35
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.4e-35 Score=343.06 Aligned_cols=309 Identities=24% Similarity=0.329 Sum_probs=246.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+.++|+|+||+|||||||+++|... . +..+ ..+|+|.......+.|+++.++||||||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--~------v~~~-------------e~~GIT~~iga~~v~~~~~~ItfiDTPG 346 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--N------VAAG-------------EAGGITQHIGAYQVETNGGKITFLDTPG 346 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--C------cccc-------------ccCceeeeccEEEEEECCEEEEEEECCC
Confidence 46789999999999999999999531 0 1111 1368898888888999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeee
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (761)
|.+|...+.++++.+|++|||||+++|+..||.++|.++...++|+|+|+||+|+.+++++++..++... +..
T Consensus 347 he~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~~------ 419 (787)
T PRK05306 347 HEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GLV------ 419 (787)
T ss_pred CccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-ccc------
Confidence 9999999999999999999999999999999999999999999999999999999877665555444321 000
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
.+
T Consensus 420 -------------------------------------------------------------~e----------------- 421 (787)
T PRK05306 420 -------------------------------------------------------------PE----------------- 421 (787)
T ss_pred -------------------------------------------------------------HH-----------------
Confidence 00
Q ss_pred HHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccE
Q 004316 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQL 388 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l 388 (761)
..+..+|++++||++|.||+.|+++|..... .. ...++++.|+.++||+++.+++ |.+
T Consensus 422 ----~~g~~vp~vpvSAktG~GI~eLle~I~~~~e-~~----------------~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 422 ----EWGGDTIFVPVSAKTGEGIDELLEAILLQAE-VL----------------ELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred ----HhCCCceEEEEeCCCCCCchHHHHhhhhhhh-hh----------------hcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 0122368999999999999999999875211 00 1124678899999999999998 999
Q ss_pred EEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-cc-ccCceeecCCCc---------
Q 004316 389 TYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFTDGSVK--------- 457 (761)
Q Consensus 389 ~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~~~~~~--------- 457 (761)
+++||++|+|+.||.|++.+ ++.+|+.|.+....++++|.|||+|.|.|| ++ .+||||+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999853 467788888888889999999999999999 66 899999832211
Q ss_pred ---------------cccccCCCC--C---ceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecch
Q 004316 458 ---------------YTMTSMHVP--E---PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGE 517 (761)
Q Consensus 458 ---------------~~l~~~~~p--~---Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~Ge 517 (761)
..+..+..+ . +.+.+.|.+...+..+.|..+|.+|..+++.+.+ +-+|.|.
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i---------~~~~vG~ 626 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI---------IHSGVGA 626 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE---------EeeccCC
Confidence 112222111 1 3689999999999999999999999999988876 3466676
Q ss_pred hH
Q 004316 518 LH 519 (761)
Q Consensus 518 lH 519 (761)
+.
T Consensus 627 it 628 (787)
T PRK05306 627 IT 628 (787)
T ss_pred CC
Confidence 64
No 36
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.7e-35 Score=329.84 Aligned_cols=273 Identities=25% Similarity=0.350 Sum_probs=217.0
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
..+..+||+++||+|+|||||+++|++..+.+... ...+ ...+|+.++|+++|+|++.....++++++.++||||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~--~~~~---~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt 151 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGS--APKK---YDEIDAAPEERARGITINTATVEYETENRHYAHVDC 151 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccc--cccc---cccccCChhHHhCCeeEEEEEEEEecCCcEEEEEEC
Confidence 35678999999999999999999999988876431 2222 457899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
|||.+|..++..++..+|++++|||+.+|+..||+++|..+...++| +|+++||||+... ++..+.+.+.
T Consensus 152 PGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~------- 222 (478)
T PLN03126 152 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLELVELE------- 222 (478)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH--HHHHHHHHHH-------
Confidence 99999999999999999999999999999999999999999999999 5788999998541 2112211111
Q ss_pred eeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
+.
T Consensus 223 ------------------------------------------------------------------------------i~ 224 (478)
T PLN03126 223 ------------------------------------------------------------------------------VR 224 (478)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 11
Q ss_pred HHHHHHHhcCcceeEeecccCCCc------------------chHHHHHHHHhhCCCCcccccccccccCccceeeccCC
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNK------------------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGN 368 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~------------------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~ 368 (761)
+.++..-.....+|++.+||++|. ++..|++.|.++.|.|. .+
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~-------------------r~ 285 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQ-------------------RQ 285 (478)
T ss_pred HHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCC-------------------Cc
Confidence 111110001123566667776653 25679999988877664 24
Q ss_pred CCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC--eEEecCcEEEEecCceeecceecCCCEEEE--ecc
Q 004316 369 PDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV 443 (761)
Q Consensus 369 ~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl 443 (761)
.+.||.++|..++..++ |.++.|+|.+|++++||.|++.+.+ ...+|+.|... ..+++.|.|||.+++ .|+
T Consensus 286 ~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i 361 (478)
T PLN03126 286 TDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGI 361 (478)
T ss_pred cccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccCC
Confidence 56899999999999887 9999999999999999999998765 45678887633 468999999999886 676
Q ss_pred ---ccccCceeecCC
Q 004316 444 ---DCASGDTFTDGS 455 (761)
Q Consensus 444 ---~~~~GdtL~~~~ 455 (761)
+++.|++|++.+
T Consensus 362 ~~~di~rG~VL~~~~ 376 (478)
T PLN03126 362 QKADIQRGMVLAKPG 376 (478)
T ss_pred cHHHcCCccEEecCC
Confidence 688999999864
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=7.9e-35 Score=322.73 Aligned_cols=272 Identities=25% Similarity=0.364 Sum_probs=214.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.++.+||+++||+|||||||+++|++... ..|..+.. ..+.+|..++|+++|+|++.....++++++.++|||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~--~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtp 83 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAAR--AYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhccccc--ccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECC
Confidence 45789999999999999999999975422 11111111 13579999999999999999999888889999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
||.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+... ++..+.+.+.
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~-------- 153 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEME-------- 153 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999976 58999998532 1111111111
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
+++
T Consensus 154 -----------------------------------------------------------------------------i~~ 156 (394)
T TIGR00485 154 -----------------------------------------------------------------------------VRE 156 (394)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHHhcCcceeEeecccCCCc--------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEe
Q 004316 308 AIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
.++..-.....+|++++||++|. ++..|++++.+++|.|. .+.++||.++|++
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~-------------------~~~~~p~r~~V~~ 217 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE-------------------RETDKPFLMPIED 217 (394)
T ss_pred HHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC-------------------CCCCCCeEEEEEE
Confidence 11110001123789999999875 56789999988888775 3457899999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCC--CeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccCcee
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTF 451 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL 451 (761)
++.+++ |++++|||.+|++++||.|++.+. ++..+|+.|... ..++++|.|||.+++ .|+ +++.|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999998 999999999999999999998763 566788888742 467899999999975 676 57899999
Q ss_pred ecCC
Q 004316 452 TDGS 455 (761)
Q Consensus 452 ~~~~ 455 (761)
++.+
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9863
No 38
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.4e-34 Score=318.58 Aligned_cols=273 Identities=25% Similarity=0.342 Sum_probs=215.8
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
..+...||+++||+|||||||+++|++..+.. +.. .....+.+|..++|+++|+|++.....+.+++.+++||||
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~---g~~--~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDt 82 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GGG--EAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDC 82 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhc---CCc--ccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEEC
Confidence 34567899999999999999999998743311 110 1011347899999999999999999999899999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
|||.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||+|+... .+..+.+.+.
T Consensus 83 PGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~~e------- 153 (396)
T PRK12735 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEME------- 153 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999976 57999998531 1111111111
Q ss_pred eeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
+.
T Consensus 154 ------------------------------------------------------------------------------i~ 155 (396)
T PRK12735 154 ------------------------------------------------------------------------------VR 155 (396)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHhcCcceeEeecccCCC----------cchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEE
Q 004316 307 EAIRRATVARKFIPVFMGSAFKN----------KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~----------~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (761)
+.++..-.....+|++++||++| .|+..|+++|.+.+|.|. .+.++||.++
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~-------------------~~~~~p~r~~ 216 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPE-------------------RAIDKPFLMP 216 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCC-------------------ccCCCCeEEE
Confidence 01110000112478888999998 478999999999999774 2457899999
Q ss_pred EEeeeeccC-ccEEEEEEEcceecCCCEEEecCC--CeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccC
Q 004316 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASG 448 (761)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 448 (761)
|..++..++ |.++.|||.+|++++||+|++.+. ++..+|+.|.. ...++++|.|||.+++ .|+ +++.|
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG 292 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERG 292 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcc
Confidence 999999987 999999999999999999998875 35667888763 2468999999999986 676 68899
Q ss_pred ceeecCC
Q 004316 449 DTFTDGS 455 (761)
Q Consensus 449 dtL~~~~ 455 (761)
++|++.+
T Consensus 293 ~vl~~~~ 299 (396)
T PRK12735 293 QVLAKPG 299 (396)
T ss_pred eEEEcCC
Confidence 9999864
No 39
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.4e-34 Score=317.16 Aligned_cols=273 Identities=25% Similarity=0.353 Sum_probs=215.3
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
+.+..+||+++||+|||||||+++|++..... +. ......+.+|+.++|+++|+|++.....+.+++.+++|+||
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~---g~--~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDt 82 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GG--AEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDC 82 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhc---cC--CcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEEC
Confidence 34678899999999999999999998743211 10 01011347899999999999999999888889999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
|||.+|...+..++..+|++++|||+.+|+..||++++.++...++|.+ +++||+|+... .+.++.+.+.
T Consensus 83 PG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~--~~~~~~~~~~------- 153 (396)
T PRK00049 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEME------- 153 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcch--HHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999986 58999998531 1111111111
Q ss_pred eeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 227 ~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
+.
T Consensus 154 ------------------------------------------------------------------------------i~ 155 (396)
T PRK00049 154 ------------------------------------------------------------------------------VR 155 (396)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHhcCcceeEeecccCCCc----------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEE
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~----------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (761)
+.+...-.....+|++++||++|. |+..|+++|.+++|.|. ...+.||.++
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~-------------------~~~~~p~r~~ 216 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPE-------------------RAIDKPFLMP 216 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCC-------------------CCCCCCeEEE
Confidence 111100001124688888998865 67899999999998774 2457899999
Q ss_pred EEeeeeccC-ccEEEEEEEcceecCCCEEEecCC--CeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccC
Q 004316 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASG 448 (761)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 448 (761)
|..++..++ |.++.|||.+|++++||+|.+.+. ++..+|+.|... ..++++|.|||.+++ .|+ +++.|
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G 292 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERG 292 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcc
Confidence 999999887 999999999999999999998765 566788888642 368999999999886 676 68899
Q ss_pred ceeecCC
Q 004316 449 DTFTDGS 455 (761)
Q Consensus 449 dtL~~~~ 455 (761)
++|++.+
T Consensus 293 ~vl~~~~ 299 (396)
T PRK00049 293 QVLAKPG 299 (396)
T ss_pred eEEecCC
Confidence 9999864
No 40
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.3e-34 Score=322.81 Aligned_cols=274 Identities=27% Similarity=0.359 Sum_probs=220.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--ee--------ccCCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--EV--------RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~--~v--------~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+...||+++||+|||||||+++|++..|.+.... .+ .....+.+++|+.++|+++|+|++.....+++++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4678999999999999999999999999886531 00 0112346789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCC--CcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChH---HHH
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG--GVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW---KVL 213 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~--g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~---~~~ 213 (761)
+.++|||||||.+|...+..+++.+|++|+|+|+.+ ++..|+..++..+...++| +++++||+|+...+.. ...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999988875 7889999998653211 111
Q ss_pred HHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004316 214 DQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDM 293 (761)
Q Consensus 214 ~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~ 293 (761)
+++.+.+.
T Consensus 164 ~~i~~~l~------------------------------------------------------------------------ 171 (425)
T PRK12317 164 EEVSKLLK------------------------------------------------------------------------ 171 (425)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 22221110
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccCccc
Q 004316 294 FLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEE 361 (761)
Q Consensus 294 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~ 361 (761)
..-.....+|++++||++|.|+++ |+++| +.+|.|.
T Consensus 172 -----------------~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~-------------- 219 (425)
T PRK12317 172 -----------------MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPE-------------- 219 (425)
T ss_pred -----------------hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCc--------------
Confidence 000001135788899999999975 78886 4466663
Q ss_pred eeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE
Q 004316 362 KVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (761)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i 440 (761)
.+.+.||.++|..++..++ |+++.|||.+|+++.||.|++.+.+...+|+.|.. ...+++.|.|||.|++
T Consensus 220 -----~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v~i 290 (425)
T PRK12317 220 -----KPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM----HHEELPQAEPGDNIGF 290 (425)
T ss_pred -----cccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE----CCcccCEECCCCeEEE
Confidence 2457899999999999887 99999999999999999999999998888988874 2468999999999875
Q ss_pred --ecc---ccccCceeecCCC
Q 004316 441 --FGV---DCASGDTFTDGSV 456 (761)
Q Consensus 441 --~gl---~~~~GdtL~~~~~ 456 (761)
.|+ ++..|++|++...
T Consensus 291 ~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 291 NVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EECCCCHHHccCccEecCCCC
Confidence 566 5789999998653
No 41
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.3e-33 Score=315.03 Aligned_cols=274 Identities=25% Similarity=0.339 Sum_probs=211.7
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
+..+..+||+++||+|||||||+++|+... .+.|..... ....+|..++|+++|+|++.....+++++++++|+|
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iD 130 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAV--AFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVD 130 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccce--eeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEE
Confidence 345678999999999999999999996331 111111111 022689999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHHHHhCCcee
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCA 225 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 225 (761)
||||.+|...+..++..+|++++|||+.+|+..||++++.++...++|. |+++||||+... .+..+.+.+.+
T Consensus 131 tPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i----- 203 (447)
T PLN03127 131 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMEL----- 203 (447)
T ss_pred CCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999999999995 788999998531 11111111110
Q ss_pred eeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHH
Q 004316 226 AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDL 305 (761)
Q Consensus 226 ~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l 305 (761)
T Consensus 204 -------------------------------------------------------------------------------- 203 (447)
T PLN03127 204 -------------------------------------------------------------------------------- 203 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCcceeEeecccC---CCcc-------hHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEE
Q 004316 306 EEAIRRATVARKFIPVFMGSAF---KNKG-------VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVA 375 (761)
Q Consensus 306 ~~~l~~~~~~~~~~Pv~~~SA~---~~~G-------i~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 375 (761)
.+.+...-.....+|++++||+ +|.| +..|++++.+++|.|. .+.++||.+
T Consensus 204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~-------------------r~~~~pfr~ 264 (447)
T PLN03127 204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPV-------------------RVLDKPFLM 264 (447)
T ss_pred HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCC-------------------cccccceEe
Confidence 0000000000123677777775 4544 7899999999999774 245689999
Q ss_pred EEEeeeeccC-ccEEEEEEEcceecCCCEEEecCC----CeEEecCcEEEEecCceeecceecCCCEEEE--ecc---cc
Q 004316 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT----GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DC 445 (761)
Q Consensus 376 ~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~ 445 (761)
.|..++..++ |.++.|||.+|++++||.|++.+. +...+|+.|... ..+++++.|||.+++ .|+ ++
T Consensus 265 ~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i 340 (447)
T PLN03127 265 PIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDV 340 (447)
T ss_pred eEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHC
Confidence 9999999887 999999999999999999998754 346788888643 347899999999985 676 58
Q ss_pred ccCceeecCC
Q 004316 446 ASGDTFTDGS 455 (761)
Q Consensus 446 ~~GdtL~~~~ 455 (761)
+.|++|++.+
T Consensus 341 ~rG~Vl~~~~ 350 (447)
T PLN03127 341 QRGQVICKPG 350 (447)
T ss_pred CCccEEecCC
Confidence 8999999863
No 42
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=5.4e-34 Score=316.50 Aligned_cols=271 Identities=23% Similarity=0.271 Sum_probs=210.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCcee--eeeec-----c-----CCcccccccChhhhhhhcceeeeceEEEeecCeE
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR-----G-----RDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQ 141 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~--~~~v~-----~-----~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 141 (761)
||+++||+|||||||+++||+.+|.+.+ .+.++ . .+.+++++|+.++|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999999999876 22222 1 2345789999999999999999999999999999
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHh
Q 004316 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKL 220 (761)
Q Consensus 142 i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l 220 (761)
++|||||||.+|...+..++..+|++|+|||+.+|+..||++++..+...++| +|+|+||||+...+ .+.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887 67799999986433 22222222211
Q ss_pred CCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCC
Q 004316 221 RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI 300 (761)
Q Consensus 221 ~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 300 (761)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (406)
T TIGR02034 161 L------------------------------------------------------------------------------- 161 (406)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccCccceeeccCC
Q 004316 301 SSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGN 368 (761)
Q Consensus 301 ~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~ 368 (761)
+.++ .. ....+|++.+||++|.|+.. |++++.. +|.|. .+
T Consensus 162 ------~~~~-~~-~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~-------------------~~ 213 (406)
T TIGR02034 162 ------AFAE-QL-GFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVER-------------------DA 213 (406)
T ss_pred ------HHHH-Hc-CCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCC-------------------Cc
Confidence 0000 00 01135677889999999875 6666643 45443 23
Q ss_pred CCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc---c
Q 004316 369 PDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV---D 444 (761)
Q Consensus 369 ~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl---~ 444 (761)
.+.||.+.|..++...+ +.-..|+|.+|+|++||+|.+.+.+...+|+.|... ..++++|.|||.+++..- +
T Consensus 214 ~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~ 289 (406)
T TIGR02034 214 QDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDEID 289 (406)
T ss_pred CCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCccc
Confidence 46788887776654322 222569999999999999999998888899998743 347899999999997543 5
Q ss_pred cccCceeecCCC
Q 004316 445 CASGDTFTDGSV 456 (761)
Q Consensus 445 ~~~GdtL~~~~~ 456 (761)
++.|++|++.+.
T Consensus 290 i~rG~vl~~~~~ 301 (406)
T TIGR02034 290 ISRGDLLAAADS 301 (406)
T ss_pred cCCccEEEcCCC
Confidence 788999998754
No 43
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.1e-33 Score=314.94 Aligned_cols=277 Identities=25% Similarity=0.336 Sum_probs=218.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeee--------e--ccCCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHE--------V--RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~--------v--~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+..+||+++||+|||||||+++|++..|.++.... . .....+.+++|..++|+++|+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 56789999999999999999999999998764210 0 1122346789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC---cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHH
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG---VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQ 215 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g---~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~ 215 (761)
+.++|||||||.+|...+..+++.+|++|+|+|++++ ...|+..++..+...+++ +|+|+||+|+...+.. .++.
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~-~~~~ 163 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE-EFEA 163 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH-HHHH
Confidence 9999999999999999999999999999999999999 788898888888777764 7889999999643321 1111
Q ss_pred HHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHh
Q 004316 216 ARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFL 295 (761)
Q Consensus 216 i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l 295 (761)
+.+.
T Consensus 164 ~~~e---------------------------------------------------------------------------- 167 (426)
T TIGR00483 164 IKKE---------------------------------------------------------------------------- 167 (426)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred cCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccCcccee
Q 004316 296 SDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKV 363 (761)
Q Consensus 296 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 363 (761)
+.+.++..-.....+|++.+||++|.|+.+ |+++|. .+|.|.
T Consensus 168 ---------i~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~-~~~~~~---------------- 221 (426)
T TIGR00483 168 ---------VSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALD-ALEPPE---------------- 221 (426)
T ss_pred ---------HHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHh-cCCCCC----------------
Confidence 000000000011236788889999999974 888885 455553
Q ss_pred eccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--
Q 004316 364 ILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV-- 440 (761)
Q Consensus 364 ~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i-- 440 (761)
.+.+.||.++|..++..++ |+++.|||.+|+++.||.|.+.+.+...+|+.|... ..++++|.|||.+++
T Consensus 222 ---~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l 294 (426)
T TIGR00483 222 ---KPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH----HEQIEQAEPGDNIGFNV 294 (426)
T ss_pred ---CccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC----CcccCEEcCCCEEEEEE
Confidence 2356899999999999887 999999999999999999999999988889988732 357899999999886
Q ss_pred ecc---ccccCceeecCCC
Q 004316 441 FGV---DCASGDTFTDGSV 456 (761)
Q Consensus 441 ~gl---~~~~GdtL~~~~~ 456 (761)
.|+ +++.|++|++...
T Consensus 295 ~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 295 RGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred CCCChhhcccceEEecCCC
Confidence 665 5789999988643
No 44
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=2.2e-33 Score=316.15 Aligned_cols=276 Identities=23% Similarity=0.259 Sum_probs=213.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCcee--eeeec----------cCCcccccccChhhhhhhcceeeeceEEEee
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR----------GRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~--~~~v~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (761)
+...||+|+||+|+|||||+++||+.+|.+.+ .+.+. +...+.+++|+.++|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45689999999999999999999999999876 22221 1224567999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 216 (761)
++++++|||||||.+|...+..+++.+|++|+|||+.+|+..||++++..+...+++ +|+++||||+...+ .+.++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988865 68899999986433 1222222
Q ss_pred HHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Q 004316 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (761)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (761)
.+.+.
T Consensus 184 ~~~l~--------------------------------------------------------------------------- 188 (474)
T PRK05124 184 REDYL--------------------------------------------------------------------------- 188 (474)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccCccceee
Q 004316 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (761)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 364 (761)
..+. ........|++.+||++|.|+.. |++.+ +.+|.|.
T Consensus 189 ----------~~~~-~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~----------------- 239 (474)
T PRK05124 189 ----------TFAE-QLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQR----------------- 239 (474)
T ss_pred ----------HHHH-hcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCC-----------------
Confidence 0000 00001246788889999999865 55543 5565553
Q ss_pred ccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc
Q 004316 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV 443 (761)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl 443 (761)
...+.||.+.|..++...+ .+-..|||.+|+|+.||+|++.+.++..+|+.|... ..+++.|.|||.|++..-
T Consensus 240 --~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~L~ 313 (474)
T PRK05124 240 --VVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLVLE 313 (474)
T ss_pred --CCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEEeC
Confidence 2356799998887764332 222569999999999999999999988899998743 236899999999997543
Q ss_pred ---ccccCceeecCCC
Q 004316 444 ---DCASGDTFTDGSV 456 (761)
Q Consensus 444 ---~~~~GdtL~~~~~ 456 (761)
+++.||+|++.+.
T Consensus 314 ~~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 314 DEIDISRGDLLVAADE 329 (474)
T ss_pred CccccCCccEEECCCC
Confidence 6889999998653
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=7.5e-33 Score=317.04 Aligned_cols=307 Identities=25% Similarity=0.331 Sum_probs=236.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCe-EEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTP 148 (761)
.+.++|+++||+|||||||+++|.... +.. ...+|+|.+.....+.|++. .++|||||
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--------v~~-------------~e~~GIT~~ig~~~v~~~~~~~i~~iDTP 143 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--------VAQ-------------GEAGGITQHIGAYHVENEDGKMITFLDTP 143 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--------ccc-------------ccCCceeecceEEEEEECCCcEEEEEECC
Confidence 356799999999999999999995311 110 11257888888888888655 99999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
||.+|...+.++++.+|++|+|+|+++|+..||.++++++...++|+++++||+|+.++++++..+++.+. +..+
T Consensus 144 Ghe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g~~~---- 218 (587)
T TIGR00487 144 GHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-GLVP---- 218 (587)
T ss_pred CCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-hhhH----
Confidence 99999999999999999999999999999999999999999999999999999999876655444333211 1000
Q ss_pred ecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004316 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (761)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (761)
+
T Consensus 219 ---------------------------------------------------------------~---------------- 219 (587)
T TIGR00487 219 ---------------------------------------------------------------E---------------- 219 (587)
T ss_pred ---------------------------------------------------------------H----------------
Confidence 0
Q ss_pred HHHHHhcCcceeEeecccCCCcchHHHHHHHHhh--CCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-
Q 004316 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY--LPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (761)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~--lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (761)
..+...|++.+||++|.|+++|++++... ++. ...+++.|+.++|++++.+++
T Consensus 220 -----~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~-------------------l~~~~~~~~~~~V~ev~~~~g~ 275 (587)
T TIGR00487 220 -----DWGGDTIFVPVSALTGDGIDELLDMILLQSEVEE-------------------LKANPNGQASGVVIEAQLDKGR 275 (587)
T ss_pred -----hcCCCceEEEEECCCCCChHHHHHhhhhhhhhcc-------------------ccCCCCCCceeEEEEEEEeCCC
Confidence 01122478888999999999999998642 111 124567899999999999997
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-cc-ccCceeecCCC-------
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFTDGSV------- 456 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~~~~~------- 456 (761)
|++++++|++|+|++||.|.+.+. ..+|..++ ......+++|.||++|.|.|+ ++ .+||+|....+
T Consensus 276 G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~---~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~ 350 (587)
T TIGR00487 276 GPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMI---DENGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLV 350 (587)
T ss_pred cEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEE---CCCCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHH
Confidence 999999999999999999988763 23454444 444567899999999999999 65 89999973211
Q ss_pred -----------------ccccccCCC-----CCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEe
Q 004316 457 -----------------KYTMTSMHV-----PEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG 514 (761)
Q Consensus 457 -----------------~~~l~~~~~-----p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g 514 (761)
...+..+.. ..|.+.+.|.+...+..+.|.++|.++..+++++.+. -.|
T Consensus 351 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~---------~~~ 421 (587)
T TIGR00487 351 AEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI---------HSG 421 (587)
T ss_pred HHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE---------Eee
Confidence 011122111 1378999999999999999999999999999998764 356
Q ss_pred cchhH
Q 004316 515 MGELH 519 (761)
Q Consensus 515 ~GelH 519 (761)
.|.++
T Consensus 422 vG~i~ 426 (587)
T TIGR00487 422 VGGIT 426 (587)
T ss_pred cCCCc
Confidence 66654
No 46
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=5.5e-32 Score=301.03 Aligned_cols=255 Identities=19% Similarity=0.259 Sum_probs=200.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-----------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----------- 137 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----------- 137 (761)
.+...||+++||+|||||||+.+|. ...+|..++|++||+|++.....+.+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLt------------------g~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~ 92 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALS------------------GVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTC 92 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHh------------------CCCcccchhhHHhCCchhccccccccccCcccCCccc
Confidence 3456789999999999999999994 22457789999999999887765522
Q ss_pred ----c------------------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-cchhHHHHHHHHHHcCCC
Q 004316 138 ----K------------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVP 194 (761)
Q Consensus 138 ----~------------------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~~p 194 (761)
. .+.++|||||||.+|...+..++..+|++++||||.+| ++.||++++..+...+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~ 172 (460)
T PTZ00327 93 YQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLK 172 (460)
T ss_pred ccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCC
Confidence 0 24799999999999999999999999999999999996 799999999999999987
Q ss_pred -EEEEEeCCCCCCCC-hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHH
Q 004316 195 -RLAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFV 272 (761)
Q Consensus 195 -~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~ 272 (761)
+|+|+||+|+...+ ..+.++++++.+
T Consensus 173 ~iIVvlNKiDlv~~~~~~~~~~ei~~~l---------------------------------------------------- 200 (460)
T PTZ00327 173 HIIILQNKIDLVKEAQAQDQYEEIRNFV---------------------------------------------------- 200 (460)
T ss_pred cEEEEEecccccCHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 57899999986321 112222222111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccc
Q 004316 273 AEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNY 352 (761)
Q Consensus 273 ~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~ 352 (761)
+.. .....|++.+||++|.|++.|++.|.+.+|.|.
T Consensus 201 -------------------------------------~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~----- 236 (460)
T PTZ00327 201 -------------------------------------KGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPK----- 236 (460)
T ss_pred -------------------------------------Hhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCC-----
Confidence 000 123578999999999999999999999999874
Q ss_pred cccccCccceeeccCCCCCCcEEEEEeeeec--------cC-ccEEEEEEEcceecCCCEEEecCCC-------------
Q 004316 353 ALDQKNNEEKVILSGNPDGPLVALAFKLEEG--------RF-GQLTYLRIYEGVIRKGDFIINVNTG------------- 410 (761)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~--------~~-G~l~~~RV~sG~l~~g~~v~~~~~~------------- 410 (761)
.+.+.|+.++|..++.. ++ |.++.|+|.+|++++||.|.+.+.+
T Consensus 237 --------------r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 302 (460)
T PTZ00327 237 --------------RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRP 302 (460)
T ss_pred --------------CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCcccccc
Confidence 24567999998877643 23 8899999999999999999998754
Q ss_pred eEEecCcEEEEecCceeecceecCCCEEEEe-----cc---ccccCceeecCC
Q 004316 411 KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGS 455 (761)
Q Consensus 411 ~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~ 455 (761)
...+|+.|.. ...++++|.|||.++|. ++ ++..|++|+..+
T Consensus 303 ~~~~VksI~~----~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~ 351 (460)
T PTZ00327 303 IRTRIVSLFA----ENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPG 351 (460)
T ss_pred ceEEEEEEEE----CCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCC
Confidence 2346777763 35689999999999874 44 467899999864
No 47
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.9e-31 Score=308.77 Aligned_cols=253 Identities=24% Similarity=0.333 Sum_probs=202.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec----CeEEEE
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----DYQINI 144 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~l 144 (761)
..+.|+|+|+||+|||||||+++|....... ...+|+|.......+.|. ++.++|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~---------------------~e~~GiTq~i~~~~v~~~~~~~~~kItf 299 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ---------------------KEAGGITQKIGAYEVEFEYKDENQKIVF 299 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc---------------------ccCCccccccceEEEEEEecCCceEEEE
Confidence 3578999999999999999999996533221 112577776665555553 589999
Q ss_pred EeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCce
Q 004316 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 145 iDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (761)
||||||.+|...+.++++.+|++|+|||+.+|+..||.++|..+...++|+|+|+||+|+..++..+..+++... +.
T Consensus 300 iDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l-- 376 (742)
T CHL00189 300 LDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL-- 376 (742)
T ss_pred EECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc--
Confidence 999999999999999999999999999999999999999999999999999999999999765543333332111 00
Q ss_pred eeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004316 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (761)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (761)
+ .
T Consensus 377 ----------------------------------------------------------------------l------~-- 378 (742)
T CHL00189 377 ----------------------------------------------------------------------I------P-- 378 (742)
T ss_pred ----------------------------------------------------------------------c------h--
Confidence 0 0
Q ss_pred HHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeecc
Q 004316 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (761)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 384 (761)
...+..+|++++||++|.||+.|+++|..+.+.+. ..++++.|+.++|+++..|+
T Consensus 379 --------e~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~-----------------lk~~~~~~~~g~V~e~~iD~ 433 (742)
T CHL00189 379 --------EKWGGDTPMIPISASQGTNIDKLLETILLLAEIED-----------------LKADPTQLAQGIILEAHLDK 433 (742)
T ss_pred --------HhhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc-----------------ccCCCCCCceEEEEEEEEcC
Confidence 00123579999999999999999999987643211 12456789999999999999
Q ss_pred C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc--ccccCceeec
Q 004316 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV--DCASGDTFTD 453 (761)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl--~~~~GdtL~~ 453 (761)
+ |+++++||++|+|+.||.|++.+ +..+|+.+.+....++++|.||++|+|.|+ ...+||+|.-
T Consensus 434 ~~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v 500 (742)
T CHL00189 434 TKGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQV 500 (742)
T ss_pred CCceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEE
Confidence 8 99999999999999999999875 356778888888889999999999999999 4678998864
No 48
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2e-32 Score=277.68 Aligned_cols=267 Identities=27% Similarity=0.369 Sum_probs=210.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHH---HcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILF---YTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~---~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
+..-||+-|||+|||||||+.++.. ..|.... -. ..-.|..++|+.|||||.....-++...+.+--+|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~-----~k---ydeID~APEEkaRGITIn~aHveYeTa~RhYaH~D 123 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKF-----KK---YDEIDKAPEEKARGITINAAHVEYETAKRHYAHTD 123 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhcccccc-----cc---HhhhhcChhhhhccceEeeeeeeeeccccccccCC
Confidence 4577999999999999999998842 2121100 00 22468889999999999999999988899999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC-CChHHHHH-HHHHHhCCc
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG-ADPWKVLD-QARSKLRHH 223 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~-~~~~~~~~-~i~~~l~~~ 223 (761)
+|||.||...++.+..+.|+|||||.|++|..+||++++-++++-+++. ++++||.|..+ .+..+.++ ++++.
T Consensus 124 CPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~REl---- 199 (449)
T KOG0460|consen 124 CPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIREL---- 199 (449)
T ss_pred CCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999986 77889999862 22111111 11211
Q ss_pred eeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (761)
T Consensus 200 -------------------------------------------------------------------------------- 199 (449)
T KOG0460|consen 200 -------------------------------------------------------------------------------- 199 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCcceeEeecccCC---C----cc---hHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCc
Q 004316 304 DLEEAIRRATVARKFIPVFMGSAFK---N----KG---VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPL 373 (761)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~---~----~G---i~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~ 373 (761)
|...-..+.-.||++|||+- | .| |..|||++.+|+|.|. ++.+.||
T Consensus 200 -----Lse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~-------------------R~~~~pF 255 (449)
T KOG0460|consen 200 -----LSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE-------------------RDLDKPF 255 (449)
T ss_pred -----HHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc-------------------cccCCCc
Confidence 11112234457999999864 2 23 6789999999999996 5778999
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeE--EecCcEEEEecCceeecceecCCCEEE--Eecc---cc
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKK--IKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV---DC 445 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~--~~i~~i~~~~g~~~~~v~~a~aGdIv~--i~gl---~~ 445 (761)
++.|-.++..++ |+++.||+-.|+|++|+++-+...++. ..|+.|- ..+..+++|.|||-++ ++|+ ++
T Consensus 256 l~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgie----mF~K~ld~a~AGDn~G~LlRGik~~dv 331 (449)
T KOG0460|consen 256 LLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIE----MFRKSLDEAQAGDNLGALLRGIKREDV 331 (449)
T ss_pred eeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHH----HHHHHHHhcccccceehhhhcCCHHHH
Confidence 999999999987 999999999999999999988776653 3344442 2244689999999988 6788 78
Q ss_pred ccCceeecCCC
Q 004316 446 ASGDTFTDGSV 456 (761)
Q Consensus 446 ~~GdtL~~~~~ 456 (761)
+.|-.++.++.
T Consensus 332 kRGmvl~~pGs 342 (449)
T KOG0460|consen 332 KRGMVLAKPGS 342 (449)
T ss_pred hcccEEecCCc
Confidence 99999987654
No 49
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.7e-31 Score=264.68 Aligned_cols=272 Identities=26% Similarity=0.366 Sum_probs=207.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.+..-||+.|||+|||||||+.++..... +.+ .....-..-.|..++|++|||||..+...++..++.+-.+|+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la---~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcP 83 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---KKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCP 83 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHH---hhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCC
Confidence 45678999999999999999999853221 100 0000002235778999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
||.||...++.+..+.|++||||+|.+|..+||++++-.++..++|. ++|+||+|+....
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~------------------- 144 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE------------------- 144 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH-------------------
Confidence 99999999999999999999999999999999999999999999986 7788999986411
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
+|+|.+..+--+|++.|
T Consensus 145 --------------------------------------------------ellelVemEvreLLs~y------------- 161 (394)
T COG0050 145 --------------------------------------------------ELLELVEMEVRELLSEY------------- 161 (394)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHc-------------
Confidence 11111111111222222
Q ss_pred HHHHHHhcCcceeEeecccCCCc--------chHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEe
Q 004316 308 AIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~--------Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
-..+.-.||+.+||+.-. -|.+|++++.+|+|.|. ++.+.||.+.|-.
T Consensus 162 -----~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe-------------------r~~dkPflmpvEd 217 (394)
T COG0050 162 -----GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE-------------------RDIDKPFLMPVED 217 (394)
T ss_pred -----CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC-------------------Cccccccccccee
Confidence 112334688888887643 26889999999999997 5788999999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCCCeE--EecCcEEEEecCceeecceecCCCEEE--Eecc---ccccCcee
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKK--IKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV---DCASGDTF 451 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~--~~i~~i~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~~GdtL 451 (761)
++.... |++++|||-.|+|+.|+.+.+..-... ..+..+- ..+...++..|||-++ ++|. ++..|..|
T Consensus 218 vfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqvL 293 (394)
T COG0050 218 VFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQVL 293 (394)
T ss_pred eEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceEe
Confidence 998876 999999999999999999988754421 1222221 1244578999999876 5676 78889999
Q ss_pred ecCC
Q 004316 452 TDGS 455 (761)
Q Consensus 452 ~~~~ 455 (761)
+.++
T Consensus 294 akpg 297 (394)
T COG0050 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 8765
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=8.2e-31 Score=302.60 Aligned_cols=248 Identities=23% Similarity=0.280 Sum_probs=201.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~~ 152 (761)
.|+++||+|||||||+++|. | ..+|..++|+++|+|++.....+.. ++..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g---------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---G---------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---C---------------CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH
Confidence 48999999999999999993 1 1357778899999999988877765 457899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC-hHHHHHHHHHHhCCceeeeeec
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVP 230 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~p 230 (761)
|...+..++..+|++++|||+.+|+..||++++..+...++|. ++|+||+|+...+ .....+++.+.+.
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~--------- 134 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR--------- 134 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999996 7999999985321 1111122211110
Q ss_pred CCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004316 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (761)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (761)
T Consensus 135 -------------------------------------------------------------------------------- 134 (614)
T PRK10512 135 -------------------------------------------------------------------------------- 134 (614)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEE
Q 004316 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (761)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~ 389 (761)
. ......|++++||++|.|++.|++.|.++. .|. .+.++||.++|..++..++ |+++
T Consensus 135 ~--~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~-------------------~~~~~~~rl~Id~vf~v~G~GtVv 192 (614)
T PRK10512 135 E--YGFAEAKLFVTAATEGRGIDALREHLLQLP-ERE-------------------HAAQHRFRLAIDRAFTVKGAGLVV 192 (614)
T ss_pred h--cCCCCCcEEEEeCCCCCCCHHHHHHHHHhh-ccc-------------------cCcCCCceEEEEEEeccCCCeEEE
Confidence 0 001236889999999999999999998754 342 1256899999999998887 9999
Q ss_pred EEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ec-c---ccccCceeecC
Q 004316 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FG-V---DCASGDTFTDG 454 (761)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l---~~~~GdtL~~~ 454 (761)
.|+|.+|++++||+|.+.+.+...+|..|.. ...++++|.||+.+++ .| + +++.||+|++.
T Consensus 193 tGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~----~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 193 TGTALSGEVKVGDTLWLTGVNKPMRVRGLHA----QNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLAD 259 (614)
T ss_pred EEEEecceEecCCEEEEcCCCCcEEEEEEec----CCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCC
Confidence 9999999999999999998888888888763 2468999999999986 56 5 67899999975
No 51
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=8.1e-31 Score=307.14 Aligned_cols=274 Identities=23% Similarity=0.259 Sum_probs=209.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceee------------eeeccCCcccccccChhhhhhhcceeeeceEEEeec
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEI------------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (761)
...||+|+||+|||||||+++|++..|.+... |..++...+.+.+|..++|+++|+|++.....++++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 44579999999999999999999999988631 111122345678999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~ 217 (761)
+.+++|||||||.+|...+..++..+|++|+|||+.+|+..||++++..+...+++ +|+++||+|+...+. +.++++.
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~-~~~~~i~ 181 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ-EVFDEIV 181 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchh-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988865 678999999864221 1122111
Q ss_pred HHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC
Q 004316 218 SKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSD 297 (761)
Q Consensus 218 ~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 297 (761)
..+
T Consensus 182 ~~i----------------------------------------------------------------------------- 184 (632)
T PRK05506 182 ADY----------------------------------------------------------------------------- 184 (632)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchH------------HHHHHHHhhCCCCcccccccccccCccceeec
Q 004316 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYALDQKNNEEKVIL 365 (761)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~ 365 (761)
.+.+.. . ....+|++++||++|.|+. .|++.|.. +|.|.
T Consensus 185 --------~~~~~~-~-~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~------------------ 235 (632)
T PRK05506 185 --------RAFAAK-L-GLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIAS------------------ 235 (632)
T ss_pred --------HHHHHH-c-CCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCC------------------
Confidence 000000 0 0123567888999999987 46666643 44332
Q ss_pred cCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-
Q 004316 366 SGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV- 443 (761)
Q Consensus 366 ~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl- 443 (761)
...++||.+.|..++...+ ++-..|+|.+|++++||+|.+.+.+...+|+.|... ..++++|.|||.|++..-
T Consensus 236 -~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~ 310 (632)
T PRK05506 236 -DRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP----DGDLDEAFAGQAVTLTLAD 310 (632)
T ss_pred -CcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC----CceeCEEcCCCeEEEEecC
Confidence 1246799888877665332 233569999999999999999999988899998732 346899999999997542
Q ss_pred --ccccCceeecCCC
Q 004316 444 --DCASGDTFTDGSV 456 (761)
Q Consensus 444 --~~~~GdtL~~~~~ 456 (761)
+++.|++|++.+.
T Consensus 311 ~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 311 EIDISRGDMLARADN 325 (632)
T ss_pred ccccCCccEEecCCC
Confidence 6789999998754
No 52
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=2.1e-30 Score=287.85 Aligned_cols=256 Identities=23% Similarity=0.314 Sum_probs=200.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-----------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (761)
+...||+++||+|||||||+++|. ..++|..++|++||+|++.....+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~------------------~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~ 68 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT------------------GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAY 68 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh------------------CeecccCHhHHhcCcEEEecccccccccccccCccccc
Confidence 345799999999999999999992 225789999999999999876554432
Q ss_pred ---------------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHHHcCCC-EEEEEeC
Q 004316 139 ---------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-RLAFINK 201 (761)
Q Consensus 139 ---------------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~p-~iiviNK 201 (761)
.+.++|||||||.+|...+..++..+|++++|+|+.++. ..++..++..+...+++ +++|+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK 148 (411)
T PRK04000 69 TTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNK 148 (411)
T ss_pred cccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEe
Confidence 268999999999999999999999999999999999998 89999999998888874 7999999
Q ss_pred CCCCCCChH-HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHH
Q 004316 202 LDRMGADPW-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELI 280 (761)
Q Consensus 202 ~D~~~~~~~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~ 280 (761)
+|+...+.. +..+++.+.+.
T Consensus 149 ~Dl~~~~~~~~~~~~i~~~l~----------------------------------------------------------- 169 (411)
T PRK04000 149 IDLVSKERALENYEQIKEFVK----------------------------------------------------------- 169 (411)
T ss_pred eccccchhHHHHHHHHHHHhc-----------------------------------------------------------
Confidence 998642210 11111111110
Q ss_pred HHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCcc
Q 004316 281 ELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE 360 (761)
Q Consensus 281 e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~ 360 (761)
. . ....+|++.+||++|.|++.|++.|.+++|.|.
T Consensus 170 ----------------~--------------~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~------------- 204 (411)
T PRK04000 170 ----------------G--------------T--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE------------- 204 (411)
T ss_pred ----------------c--------------c--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC-------------
Confidence 0 0 012468899999999999999999999998774
Q ss_pred ceeeccCCCCCCcEEEEEeeeec--------cC-ccEEEEEEEcceecCCCEEEecCCCe------------EEecCcEE
Q 004316 361 EKVILSGNPDGPLVALAFKLEEG--------RF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLV 419 (761)
Q Consensus 361 ~~~~~~~~~~~p~~~~V~k~~~~--------~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~i~ 419 (761)
.+.+.|+.++|..++.. ++ |.++.|||.+|++++||.|.+.+.++ ..+|+.|.
T Consensus 205 ------~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~ 278 (411)
T PRK04000 205 ------RDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLR 278 (411)
T ss_pred ------CCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEE
Confidence 23568999999988743 23 67999999999999999999988653 34677776
Q ss_pred EEecCceeecceecCCCEEEEe-----cc---ccccCceeecCCCc
Q 004316 420 RMHSNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSVK 457 (761)
Q Consensus 420 ~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~~ 457 (761)
. ...++++|.|||.+++. ++ ++..|+.|++.+.+
T Consensus 279 ~----~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 279 A----GGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred E----CCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCC
Confidence 2 24689999999998874 44 56789999987543
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=1.5e-31 Score=266.96 Aligned_cols=145 Identities=35% Similarity=0.491 Sum_probs=126.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe--ecCeEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDT 147 (761)
+++|||+++||+|||||||+++|++..+.+.+.+..... .+..|..+.|+++|+|+......+. +.++.++||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDt 77 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK---NAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDT 77 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH---HCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccc---cccccccchhhhcccccccccccccccccccceeeccc
Confidence 468999999999999999999999999887654333322 4568999999999999999999999 99999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHH
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~ 217 (761)
|||.+|..++.++++.+|+||+|||+.+|+..|+.+++..+..+++|+++|+||||+...++.+.++++.
T Consensus 78 PG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 78 PGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred ccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997433334444433
No 54
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=6.7e-30 Score=284.04 Aligned_cols=254 Identities=22% Similarity=0.315 Sum_probs=198.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec------------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------ 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 138 (761)
...||+++||+|||||||+++|. ...+|..++|++||+|+......+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt------------------~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 64 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT------------------GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYT 64 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh------------------CeecccCHhHHHcCceeEecccccccccccccCcccccc
Confidence 34689999999999999999993 224788899999999999876554321
Q ss_pred --------------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHHHcCCC-EEEEEeCC
Q 004316 139 --------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-RLAFINKL 202 (761)
Q Consensus 139 --------------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~p-~iiviNK~ 202 (761)
+..++|||||||.+|...+..++..+|++|+|||+++|. ..|+.+++..+...+++ +++++||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~ 144 (406)
T TIGR03680 65 TEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKI 144 (406)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 468999999999999999999999999999999999998 89999999999888875 78999999
Q ss_pred CCCCCChH-HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004316 203 DRMGADPW-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (761)
Q Consensus 203 D~~~~~~~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (761)
|+...+.. +..+++.+.+
T Consensus 145 Dl~~~~~~~~~~~~i~~~l------------------------------------------------------------- 163 (406)
T TIGR03680 145 DLVSKEKALENYEEIKEFV------------------------------------------------------------- 163 (406)
T ss_pred ccCCHHHHHHHHHHHHhhh-------------------------------------------------------------
Confidence 98642210 1111111110
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccc
Q 004316 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (761)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 361 (761)
... ....+|++.+||++|.|++.|+++|..++|.|.
T Consensus 164 ----------------------------~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~-------------- 199 (406)
T TIGR03680 164 ----------------------------KGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPE-------------- 199 (406)
T ss_pred ----------------------------hhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCC--------------
Confidence 000 012368999999999999999999999998774
Q ss_pred eeeccCCCCCCcEEEEEeeeecc--------C-ccEEEEEEEcceecCCCEEEecCCCe------------EEecCcEEE
Q 004316 362 KVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVR 420 (761)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~i~~ 420 (761)
.+.+.|+.++|..++..+ + |.++.|||.+|+|++||.|.+.+.+. ..+|+.|..
T Consensus 200 -----~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~ 274 (406)
T TIGR03680 200 -----RDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA 274 (406)
T ss_pred -----CCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE
Confidence 245789999999887533 2 56999999999999999999987642 246777763
Q ss_pred EecCceeecceecCCCEEEEe-----cc---ccccCceeecCCC
Q 004316 421 MHSNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSV 456 (761)
Q Consensus 421 ~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~ 456 (761)
...++++|.|||.++|. ++ ++..|+.|+..+.
T Consensus 275 ----~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 275 ----GGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ----CCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 34689999999999963 44 5678999998753
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=2.8e-29 Score=289.19 Aligned_cols=250 Identities=22% Similarity=0.281 Sum_probs=201.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++||+|||||||+++|.. ..+|..++|+++|+|++.....+.++++.++|||||||.+|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg------------------~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTG------------------IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhC------------------ccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH
Confidence 799999999999999999942 12466778889999999999889999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChH-HHHHHHHHHhCCceeeeeecC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW-KVLDQARSKLRHHCAAVQVPM 231 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~-~~~~~i~~~l~~~~~~~~~pi 231 (761)
...+..++..+|++++|||+++|+..||.+++..+...++| +++|+||+|+...+.. ...+++.+.+
T Consensus 64 ~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l----------- 132 (581)
T TIGR00475 64 ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL----------- 132 (581)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999 9999999998632110 0111111110
Q ss_pred CCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHH
Q 004316 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (761)
Q Consensus 232 ~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (761)
..
T Consensus 133 ------------------------------------------------------------------------------~~ 134 (581)
T TIGR00475 133 ------------------------------------------------------------------------------NS 134 (581)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEE
Q 004316 312 ATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTY 390 (761)
Q Consensus 312 ~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~ 390 (761)
......+|++.+||++|.|++++++.+.+.++.... ...++||.+.|..++..++ |+++.
T Consensus 135 -~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~------------------~~~~~p~r~~Id~~f~v~G~GtVv~ 195 (581)
T TIGR00475 135 -YIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDI------------------KRIQKPLRMAIDRAFKVKGAGTVVT 195 (581)
T ss_pred -hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC------------------cCcCCCcEEEEEEEEecCCcEEEEE
Confidence 000113688889999999999999998876654320 1246899999999998887 99999
Q ss_pred EEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccCceeec
Q 004316 391 LRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTFTD 453 (761)
Q Consensus 391 ~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~~ 453 (761)
|+|.+|+++.||+|.+.+.+...+|+.|.. ...++++|.||+.+++ .|+ +++.|..+++
T Consensus 196 G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~----~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~ 259 (581)
T TIGR00475 196 GTAFSGEVKVGDNLRLLPINHEVRVKAIQA----QNQDVEIAYAGQRIALNLMDVEPESLKRGLLILT 259 (581)
T ss_pred EEEecceEecCCEEEECCCCceEEEeEEEE----CCccCCEEECCCEEEEEeCCCCHHHcCCceEEcC
Confidence 999999999999999999998899999873 2457999999999985 566 4778855544
No 56
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.8e-29 Score=271.54 Aligned_cols=278 Identities=23% Similarity=0.289 Sum_probs=217.1
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--------ee--ccCCcccccccChhhhhhhcceeeeceEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--------EV--RGRDGVGAKMDSMDLEREKGITIQSAATSCA 136 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~--------~v--~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~ 136 (761)
..++...|.+++||+|+|||||..+|||..|.++... .- .....+.|++|...+||+||+|++.....|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 3456778999999999999999999999999886520 00 1113578999999999999999999999999
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC
Q 004316 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD 208 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~ 208 (761)
-+.+.++|+|+|||.||...++.+...||++||||||+.| ...||++|...++.+|+.- ||++||||+.+++
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 9999999999999999999999999999999999999866 4589999999999999874 8889999998765
Q ss_pred hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCH
Q 004316 209 PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDD 288 (761)
Q Consensus 209 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd 288 (761)
. +.+++|...++....
T Consensus 332 q-~RF~eIk~~l~~fL~--------------------------------------------------------------- 347 (603)
T KOG0458|consen 332 Q-DRFEEIKNKLSSFLK--------------------------------------------------------------- 347 (603)
T ss_pred H-HHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 3 344555444431100
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH---------------HHHHHHhhCCCCccccccc
Q 004316 289 KLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP---------------LLDGVLSYLPCPTEVSNYA 353 (761)
Q Consensus 289 ~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~---------------Lld~i~~~lPsp~~~~~~~ 353 (761)
+...+.. ..-+|+|+ |+++|.|+-. ||+.|.. +-.|.
T Consensus 348 -------~~~gf~e-----------s~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~------ 399 (603)
T KOG0458|consen 348 -------ESCGFKE-----------SSVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPE------ 399 (603)
T ss_pred -------HhcCccc-----------CCcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCC------
Confidence 0000000 01256666 8888888643 4555444 32232
Q ss_pred ccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeeccee
Q 004316 354 LDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEA 432 (761)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a 432 (761)
...+.||++-|..++..+. |..++|||.+|.|++||+|++++......|+.|- ....+...+
T Consensus 400 -------------~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~----~~~~~~~~a 462 (603)
T KOG0458|consen 400 -------------RPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLT----SNDEPKTWA 462 (603)
T ss_pred -------------CcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeee----cCCCcceeE
Confidence 2356699999999999987 8899999999999999999999998888888775 335688999
Q ss_pred cCCCEEE--Eecc---ccccCceeec
Q 004316 433 HAGQIVA--VFGV---DCASGDTFTD 453 (761)
Q Consensus 433 ~aGdIv~--i~gl---~~~~GdtL~~ 453 (761)
.|||-|. +.|+ .+..||+++.
T Consensus 463 ~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 463 VAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred eeCCEEEEecCccChhhcccceeeec
Confidence 9999987 4565 5789999985
No 57
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.3e-28 Score=250.09 Aligned_cols=128 Identities=48% Similarity=0.689 Sum_probs=118.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec----------CeEE
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------DYQI 142 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------~~~i 142 (761)
|||+|+||+|||||||+++|++.+|.+.+.. .+. .+++|+.+.|++||+|+++....+.|. ++.+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i 75 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLI 75 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCc---eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEE
Confidence 7999999999999999999999999876542 223 678999999999999999998887776 7899
Q ss_pred EEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 143 NIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 143 ~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+|||||||.+|..++..+++.+|++|+|+|+.+|+..||+.+++++...++|+++|+||+|+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 58
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=252.10 Aligned_cols=306 Identities=22% Similarity=0.261 Sum_probs=221.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCcee------------eeeeccCCcccccccChhhhhhhcceeeeceEEEeec
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHE------------IHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~------------~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (761)
...++.-+|++|.|||||+.+||+.+..+.. .+.--+...+....|-.+.||+.||||+.+..+|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4567899999999999999999998876533 0111112245678999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~ 217 (761)
.++|.+.|||||+.|...|..+.+-||.||++|||..|+..||++|--.+...|++. ++++||||+.+.+ ++.+++|.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 7788999997654 23333333
Q ss_pred HHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC
Q 004316 218 SKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSD 297 (761)
Q Consensus 218 ~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 297 (761)
..+.... +.+
T Consensus 164 ~dy~~fa--------------------------------------------------------~~L-------------- 173 (431)
T COG2895 164 ADYLAFA--------------------------------------------------------AQL-------------- 173 (431)
T ss_pred HHHHHHH--------------------------------------------------------HHc--------------
Confidence 3221000 000
Q ss_pred CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccCccceeec
Q 004316 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVIL 365 (761)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~ 365 (761)
......++|+ ||+.|.+|-. ||+.+-. +..
T Consensus 174 --------------~~~~~~~IPi---SAl~GDNV~~~s~~mpWY~GptLLe~LE~---------------------v~i 215 (431)
T COG2895 174 --------------GLKDVRFIPI---SALLGDNVVSKSENMPWYKGPTLLEILET---------------------VEI 215 (431)
T ss_pred --------------CCCcceEEec---hhccCCcccccccCCCcccCccHHHHHhh---------------------ccc
Confidence 0001123443 8888877642 3332211 111
Q ss_pred -cCCCCCCcEEEEEeeeeccC--ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEec
Q 004316 366 -SGNPDGPLVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFG 442 (761)
Q Consensus 366 -~~~~~~p~~~~V~k~~~~~~--G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g 442 (761)
.....+||...|-.+.. |. =+---|+|-||++++||.|.+.+.|+..+|++|..+.| +.++|.||+-|.++=
T Consensus 216 ~~~~~~~~~RfPVQ~V~R-p~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L 290 (431)
T COG2895 216 ADDRSAKAFRFPVQYVNR-PNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVL 290 (431)
T ss_pred cccccccceeeceEEecC-CCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEE
Confidence 11234566655544432 21 12334788899999999999999999999999998866 567899999988753
Q ss_pred ---cccccCceeecCCCccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHH
Q 004316 443 ---VDCASGDTFTDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNR 491 (761)
Q Consensus 443 ---l~~~~GdtL~~~~~~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~ 491 (761)
+|+..||.|+....++. ..-.+..-++++.=+|..+..--+|..+-++
T Consensus 291 ~deidisRGd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr~Y~lK~~t~~ 341 (431)
T COG2895 291 ADEIDISRGDLIVAADAPPA-VADAFDADVVWMDEEPLLPGRSYDLKIATRT 341 (431)
T ss_pred cceeecccCcEEEccCCCcc-hhhhcceeEEEecCCCCCCCceEEEEecceE
Confidence 37899999998766543 3345566789998888888765555444433
No 59
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.8e-28 Score=254.73 Aligned_cols=247 Identities=25% Similarity=0.325 Sum_probs=208.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.|+..||++||||||+.++. ...+|..++|++||+|++....+++.+++.+.|||+|||.+|
T Consensus 2 ii~t~GhidHgkT~L~~alt------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~ 63 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF 63 (447)
T ss_pred eEEEeeeeeccchhhhhhhc------------------ccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH
Confidence 58899999999999999983 346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC-hHHHHHHHHHHhCCceeeeeecC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVPM 231 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi 231 (761)
...+..++...|.|+||||+++|+..||.+++..+..++++. ++|+||+|+.... .+..++++.+.+.
T Consensus 64 i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---------- 133 (447)
T COG3276 64 ISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---------- 133 (447)
T ss_pred HHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc----------
Confidence 999999999999999999999999999999999999999998 9999999986321 1111111111110
Q ss_pred CCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHH
Q 004316 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (761)
Q Consensus 232 ~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (761)
T Consensus 134 -------------------------------------------------------------------------------- 133 (447)
T COG3276 134 -------------------------------------------------------------------------------- 133 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEE
Q 004316 312 ATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTY 390 (761)
Q Consensus 312 ~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~ 390 (761)
-.-.|+|..|+.+|.||++|-+.|.+.+- +. ..+.+.||..+|-..+..++ |+++.
T Consensus 134 ----l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~------------------e~d~~~~fri~IDraFtVKGvGTVVt 190 (447)
T COG3276 134 ----LANAKIFKTSAKTGRGIEELKNELIDLLE-EI------------------ERDEQKPFRIAIDRAFTVKGVGTVVT 190 (447)
T ss_pred ----cccccccccccccCCCHHHHHHHHHHhhh-hh------------------hhccCCceEEEEeeEEEeccccEEEE
Confidence 01246788899999999999999987654 21 24678999999999999988 99999
Q ss_pred EEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccCceeecCC
Q 004316 391 LRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTFTDGS 455 (761)
Q Consensus 391 ~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~~~~ 455 (761)
|-++||+++.||+++..+.|+..+|+.|. ..-.++++|.||+-|++ .|. ++..|+.|.+..
T Consensus 191 Gtv~sG~V~v~D~L~l~p~~k~v~VRsIq----~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 191 GTVLSGEVKVGDKLYLSPINKEVRVRSIQ----AHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred eEEeeeeEEECCEEEEecCCCeEEEEeee----ecCcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 99999999999999999999999999886 33457899999999985 565 567899888754
No 60
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3e-28 Score=252.52 Aligned_cols=320 Identities=20% Similarity=0.251 Sum_probs=242.3
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceee----------eeeccCCcccccccChhhhhhhcceeeeceEEEee
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEI----------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~----------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (761)
+++...|++++||+++||||+-..+++.+|.++++ ..-+..|.++|++|++.+||++|-|+.....+|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 35678899999999999999999999999888763 12244577899999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-------chhHHHHHHHHHHcCCCE-EEEEeCCCCCCCCh
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVPR-LAFINKLDRMGADP 209 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~ 209 (761)
...+++++|+|||..|..+++.+..+||.+++|++|..|. ..||+++..+++..++.. |+++||||.+..++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999997653 369999999999999886 77889999987765
Q ss_pred H-HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCH
Q 004316 210 W-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDD 288 (761)
Q Consensus 210 ~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd 288 (761)
. +.++++..++..... ..-|.+
T Consensus 235 s~eRy~E~~~k~~~fLr----------------------~~g~n~----------------------------------- 257 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLR----------------------KLGFNP----------------------------------- 257 (501)
T ss_pred chhhHHHHHHHHHHHHH----------------------HhcccC-----------------------------------
Confidence 4 444555444321100 000000
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhh--CCCCcccccccccccCccceeecc
Q 004316 289 KLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY--LPCPTEVSNYALDQKNNEEKVILS 366 (761)
Q Consensus 289 ~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~--lPsp~~~~~~~~~~~~~~~~~~~~ 366 (761)
...-.++|+ |.++|.++.+..+.++.+ .|++.+.- +......
T Consensus 258 ------------------------~~d~~f~p~---sg~tG~~~k~~~~s~cpwy~gp~fl~~l---------d~l~~~~ 301 (501)
T KOG0459|consen 258 ------------------------KPDKHFVPV---SGLTGANVKDRTDSVCPWYKGPIFLEYL---------DELPHLE 301 (501)
T ss_pred ------------------------CCCceeeec---ccccccchhhcccccCCcccCCccceeh---------hccCccc
Confidence 001134454 888888888776633332 23332110 0011124
Q ss_pred CCCCCCcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEE--Eecc-
Q 004316 367 GNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV- 443 (761)
Q Consensus 367 ~~~~~p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~--i~gl- 443 (761)
++.++|+++.|..-+.| .|++.+|+|-||++++||.+.++++++...|.+|| ++-.+++.+.+||.+- +.|+
T Consensus 302 R~~~GP~~~pI~~Kykd-mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~----~ddvE~~~~~pGenvk~rlkgie 376 (501)
T KOG0459|consen 302 RILNGPIRCPVANKYKD-MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIY----SDDVETDRVAPGENVKLRLKGIE 376 (501)
T ss_pred ccCCCCEEeehhhhccc-cceEEEEEecccceecCCeEEEccCCcceEEEEEe----cccceeeeccCCcceEEEecccc
Confidence 67899999998766554 49999999999999999999999999999999988 4467899999999986 5787
Q ss_pred --ccccCceeecCCCcc-----------ccccCCCCCceEEEEEEeCCCCCHhHH
Q 004316 444 --DCASGDTFTDGSVKY-----------TMTSMHVPEPVMSLAVQPVSKDSGGQF 485 (761)
Q Consensus 444 --~~~~GdtL~~~~~~~-----------~l~~~~~p~Pv~~~~iep~~~~d~~kl 485 (761)
|+.+|-+||+++++. .++...+-.|-+++.++-+...++-.+
T Consensus 377 eedi~~GfiL~~~~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i 431 (501)
T KOG0459|consen 377 EEDISPGFILCSPNNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI 431 (501)
T ss_pred hhhccCceEEecCCCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee
Confidence 789999999988753 223333456778888877666655444
No 61
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-26 Score=251.55 Aligned_cols=252 Identities=29% Similarity=0.358 Sum_probs=199.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec---CeEEEEEeC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDT 147 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDT 147 (761)
+-+-|+++||+|||||||++.+-.. .+..+ -.-|||.......+.+. ...++||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t--------~Va~~-------------EaGGITQhIGA~~v~~~~~~~~~itFiDT 62 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKT--------NVAAG-------------EAGGITQHIGAYQVPLDVIKIPGITFIDT 62 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcC--------ccccc-------------cCCceeeEeeeEEEEeccCCCceEEEEcC
Confidence 3456999999999999999999321 12222 12489999999998884 479999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||..|.....++...+|.+|||||+.+|+.+||.+.+..++..++|+++++||+|++.+++++...++.+. |..+.
T Consensus 63 PGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~E-- 139 (509)
T COG0532 63 PGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVPE-- 139 (509)
T ss_pred CcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCHh--
Confidence 999999999999999999999999999999999999999999999999999999999999998888777654 21110
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
+
T Consensus 140 ----------------------------------------------------------------------------~--- 140 (509)
T COG0532 140 ----------------------------------------------------------------------------E--- 140 (509)
T ss_pred ----------------------------------------------------------------------------h---
Confidence 0
Q ss_pred HHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-c
Q 004316 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-G 386 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G 386 (761)
++.-+.++.+||++|.|+++||+++.-..- ..+++.+++.+..+.|..+..+++ |
T Consensus 141 -------~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae-----------------v~elka~~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 141 -------WGGDVIFVPVSAKTGEGIDELLELILLLAE-----------------VLELKANPEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred -------cCCceEEEEeeccCCCCHHHHHHHHHHHHH-----------------HHhhhcCCCCcceEEEEEEEeccCCC
Confidence 112255777799999999999999863210 012346788999999999999987 9
Q ss_pred cEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-cc-ccCceeecC
Q 004316 387 QLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFTDG 454 (761)
Q Consensus 387 ~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~~~ 454 (761)
.++-+-|+.|+|+.||.|...... .++..|......+++.+.++--+-+.|+ +. ..||.....
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~-----g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~ 261 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEY-----GRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVV 261 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCC-----CceEEeehhcCCCccccCCCCCeEEeccccccccCceEEec
Confidence 999999999999999999886533 3345555666678888888877888888 43 457665543
No 62
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-26 Score=233.57 Aligned_cols=304 Identities=22% Similarity=0.309 Sum_probs=216.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec------------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------ 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 138 (761)
.--||+.+||++||||||+.+|. .-++|.+.+|-+||||++..++.....
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Als------------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~ 70 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALS------------------GVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYT 70 (415)
T ss_pred cceEeeeeeecccchhhheehhh------------------ceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccc
Confidence 34699999999999999999993 347899999999999998877554321
Q ss_pred --------------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-cchhHHHHHHHHHHcCCCE-EEEEeCC
Q 004316 139 --------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVPR-LAFINKL 202 (761)
Q Consensus 139 --------------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~~p~-iiviNK~ 202 (761)
-+.+.|+|.|||.-+...|.++....|+|||||+|++. .++||.+|+-.+...++.. |++-||+
T Consensus 71 ~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKI 150 (415)
T COG5257 71 TEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKI 150 (415)
T ss_pred cCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccc
Confidence 06799999999999999999999999999999999976 6899999999999999876 6666999
Q ss_pred CCCCCC-hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004316 203 DRMGAD-PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (761)
Q Consensus 203 D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (761)
|+...+ ..+.+++|++.++-..
T Consensus 151 DlV~~E~AlE~y~qIk~FvkGt~--------------------------------------------------------- 173 (415)
T COG5257 151 DLVSRERALENYEQIKEFVKGTV--------------------------------------------------------- 173 (415)
T ss_pred ceecHHHHHHHHHHHHHHhcccc---------------------------------------------------------
Confidence 996422 1122333333221110
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccc
Q 004316 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (761)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 361 (761)
-.-.|++.+||.++.+|+.|+++|.+++|.|.
T Consensus 174 ----------------------------------Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~-------------- 205 (415)
T COG5257 174 ----------------------------------AENAPIIPISAQHKANIDALIEAIEKYIPTPE-------------- 205 (415)
T ss_pred ----------------------------------cCCCceeeehhhhccCHHHHHHHHHHhCCCCc--------------
Confidence 01257888899999999999999999999996
Q ss_pred eeeccCCCCCCcEEEEEeeeeccC---------ccEEEEEEEcceecCCCEEEecCCC-----eEEe----cCcEEEEec
Q 004316 362 KVILSGNPDGPLVALAFKLEEGRF---------GQLTYLRIYEGVIRKGDFIINVNTG-----KKIK----VPRLVRMHS 423 (761)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~~---------G~l~~~RV~sG~l~~g~~v~~~~~~-----~~~~----i~~i~~~~g 423 (761)
.|.+.|..+||.+.|..+. |-+.-|-+..|.++.||.|-+.+.= .+.. .+.|..+++
T Consensus 206 -----rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~a 280 (415)
T COG5257 206 -----RDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQA 280 (415)
T ss_pred -----cCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEe
Confidence 6788999999999987532 4488899999999999999876531 1111 223444444
Q ss_pred CceeecceecCCCEEEEe-ccc--cccCceeecCCCccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceE
Q 004316 424 NEMEDIQEAHAGQIVAVF-GVD--CASGDTFTDGSVKYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFR 500 (761)
Q Consensus 424 ~~~~~v~~a~aGdIv~i~-gl~--~~~GdtL~~~~~~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~ 500 (761)
.. ..+++|.+|-.+++. +|| +..+|-|+..- .-.+-..|+...++.++- ..|+++.-.+-.++
T Consensus 281 g~-~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V---~G~pG~lPpv~~~~~ie~----------~LL~RvvG~~~e~k 346 (415)
T COG5257 281 GG-EDVEEARPGGLVGVGTKLDPTLTKADALVGQV---VGKPGTLPPVWTSIRIEY----------HLLERVVGTKEELK 346 (415)
T ss_pred CC-eeeeeccCCceEEEecccCcchhhhhhhcccc---ccCCCCCCCceEEEEEEe----------eehhhhhCcccccc
Confidence 43 479999999998874 443 44555554321 111123344455566652 23444444445555
Q ss_pred EEEcCCCCcEEEEecch
Q 004316 501 VGLDAESGQTIISGMGE 517 (761)
Q Consensus 501 v~~~~etge~il~g~Ge 517 (761)
++- -.++|.++.-.|-
T Consensus 347 vep-ik~~E~Lml~VGt 362 (415)
T COG5257 347 VEP-IKTNEVLMLNVGT 362 (415)
T ss_pred ccc-ccCCCeEEEEeec
Confidence 532 3567777665553
No 63
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=4.8e-27 Score=234.77 Aligned_cols=127 Identities=30% Similarity=0.425 Sum_probs=113.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeec-cCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVR-GRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~-~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
.||+++||+|+|||||+++|++.... .+..+ .+ .+.+|+.+.|++||+|++.....+++++.+++|+|||||.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~---~g~~~~~~---~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAK---KGGAKFKK---YDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh---cccccccc---cccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 58999999999999999999986432 12121 11 3578999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~ 205 (761)
+|..++.++++.+|++++|||+.+|+..|+++++..+...++| +|+|+||||+.
T Consensus 77 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 77 DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999998 67899999985
No 64
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=5.6e-26 Score=234.05 Aligned_cols=285 Identities=22% Similarity=0.339 Sum_probs=219.2
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc-ccccccChhhhhhhcceeeeceEEEeecC--------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAATSCAWKD-------- 139 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------- 139 (761)
.....+|+..||+|||||||+.+|. + |..++++. ...+.|..+.|.++|.|-+.+..-+.+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--t------G~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--T------GRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--e------cCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 3456799999999999999999884 2 33455543 46789999999999999877776665532
Q ss_pred ---------------eEEEEEeCCCCCCcHHHHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 140 ---------------YQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 140 ---------------~~i~liDTPG~~~f~~~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
+.+.|+||-||+.+...+.+++ ...|..+|||.|++|++..|++++..+...++|+|++++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 6789999999999999999998 56899999999999999999999999999999999999999
Q ss_pred CCCCC-ChHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHH
Q 004316 203 DRMGA-DPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (761)
Q Consensus 203 D~~~~-~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (761)
|+... ....+.+++.+.|.. ...+.+++..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~-v~Rip~~vk~------------------------------------------------ 296 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKR-VGRIPLIVKD------------------------------------------------ 296 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHH-hcccceeeec------------------------------------------------
Confidence 99644 355667777666643 1111111110
Q ss_pred HHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCc-ceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCcc
Q 004316 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARK-FIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE 360 (761)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~-~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~ 360 (761)
.||. ..+ ..+...++ .+|+|.+|+.+|.|++ +|+-+..+||.-.
T Consensus 297 ----~~d~----------------v~a-a~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr------------- 341 (527)
T COG5258 297 ----TDDV----------------VLA-AKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRR------------- 341 (527)
T ss_pred ----cchh----------------HHh-hhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCccc-------------
Confidence 1111 001 11223344 8999999999999998 5666667888542
Q ss_pred ceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC----eEEecCcEEEEecCceeecceecCC
Q 004316 361 EKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG----KKIKVPRLVRMHSNEMEDIQEAHAG 435 (761)
Q Consensus 361 ~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aG 435 (761)
..+..+||.+||.|+|.... |.++.|-|-+|.++.||++++.+.. .+.+|+.|- ..+..|++|.||
T Consensus 342 -----~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe----mh~~rvdsa~aG 412 (527)
T COG5258 342 -----RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE----MHHYRVDSAKAG 412 (527)
T ss_pred -----ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE----EeeEEeccccCC
Confidence 14678999999999999988 9999999999999999999987643 345677765 345689999999
Q ss_pred CEEE--Eecc---ccccCceeecC
Q 004316 436 QIVA--VFGV---DCASGDTFTDG 454 (761)
Q Consensus 436 dIv~--i~gl---~~~~GdtL~~~ 454 (761)
+|+. +.|+ .+..|.+|...
T Consensus 413 ~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 413 SIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred cEEEEEecccCHHHHhcceEecCC
Confidence 9986 5677 47889877764
No 65
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.7e-26 Score=245.10 Aligned_cols=251 Identities=27% Similarity=0.351 Sum_probs=200.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (761)
.+.+-|.|+||+|||||||+++|-... |..+ -.-|||.......+.. +|..++|+|||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--------VAA~-------------E~GGITQhIGAF~V~~p~G~~iTFLDTP 209 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--------VAAG-------------EAGGITQHIGAFTVTLPSGKSITFLDTP 209 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--------eehh-------------hcCCccceeceEEEecCCCCEEEEecCC
Confidence 467889999999999999999994321 1111 1147887777655544 57899999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
||..|..+..|+...+|.+||||.|.+|+.+||.+.+..++..++|+|+++||+|+++++++++..++... |..+
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi~~---- 284 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GIVV---- 284 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-CccH----
Confidence 99999999999999999999999999999999999999999999999999999999999999988887543 1100
Q ss_pred ecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004316 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (761)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (761)
|.
T Consensus 285 ---------------------------------------------------------------E~--------------- 286 (683)
T KOG1145|consen 285 ---------------------------------------------------------------ED--------------- 286 (683)
T ss_pred ---------------------------------------------------------------HH---------------
Confidence 00
Q ss_pred HHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-cc
Q 004316 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (761)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~ 387 (761)
.+.-++++.+||++|.|++.|.+++.-..- ..+++.++++|+-++|.....|+. |.
T Consensus 287 ------~GGdVQvipiSAl~g~nl~~L~eaill~Ae-----------------~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 287 ------LGGDVQVIPISALTGENLDLLEEAILLLAE-----------------VMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred ------cCCceeEEEeecccCCChHHHHHHHHHHHH-----------------HhhcccCCCCCceEEEEEeeecCCccc
Confidence 122367888899999999999999864211 122346789999999999999997 99
Q ss_pred EEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-cc-ccCceee
Q 004316 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDTFT 452 (761)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~GdtL~ 452 (761)
++.+-|-.|||++|+.+.... .-.||..++-. .-.++++|.+|.-+-|.|+ |+ ..||-+.
T Consensus 344 ~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~---nGk~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 344 VATVIVKRGTLKKGSVLVAGK--SWCKVRALFDH---NGKPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred eeEEEEeccccccccEEEEec--hhhhhhhhhhc---CCCCccccCCCCceEeecccCCCCCCceEE
Confidence 999999999999999987643 23466666644 4467999999999999999 65 4687554
No 66
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=1.2e-25 Score=258.35 Aligned_cols=302 Identities=24% Similarity=0.282 Sum_probs=183.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+.+.|+|+||+|||||||+++|..........+.+...-+ .++.+....+...|.+.......+.+. .++|||||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIG-ATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeec-eeeccccccccccceeccccccccccC--CEEEEECCCh
Confidence 4457999999999999999999543211111110000000 001111111111111111100111111 3799999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-ChHHHHHHHHHHhCCceeeeee
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-DPWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l~~~~~~~~~ 229 (761)
.+|...+.++++.+|++|+|+|+++|+..||..++..+...++|+++++||+|+... ..... ..+.+.+..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~------- 153 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK------- 153 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh-------
Confidence 999999999999999999999999999999999999999999999999999998521 00000 000000000
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
-+....+...+...++. .+|.+..+..+.+.. +
T Consensus 154 ----------------------------------~~~~v~~~f~~~l~ev~------------~~L~~~g~~~e~~~~-~ 186 (586)
T PRK04004 154 ----------------------------------QSQRVQQELEEKLYELI------------GQLSELGFSADRFDR-V 186 (586)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHH------------HHHHhcCCChhhhhh-h
Confidence 00011111111111121 123333333333322 1
Q ss_pred HHHHhcCcceeEeecccCCCcchHHHHHHHHh----hCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC
Q 004316 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLS----YLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~----~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 385 (761)
+ .....+|++.+||++|.|+++|++.+.. ++|.+. ..+++.|+.+.|++++.+++
T Consensus 187 ~---~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l------------------~~~~~~~~~~~V~ev~~~~g 245 (586)
T PRK04004 187 K---DFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERL------------------KIDVEGPGKGTVLEVKEERG 245 (586)
T ss_pred h---ccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhh------------------ccCCCCCeEEEEEEEEEeCC
Confidence 1 1235678899999999999999998864 344433 13567899999999999987
Q ss_pred -ccEEEEEEEcceecCCCEEEecCCCe--EEecCcEEEEe--------cCceeecceecCCCEEEEe--cc-ccccCcee
Q 004316 386 -GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMH--------SNEMEDIQEAHAGQIVAVF--GV-DCASGDTF 451 (761)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdIv~i~--gl-~~~~GdtL 451 (761)
|++++++|++|+|++||.|...+.+. ..+|..|.... ++....++++.|..-+-|. |+ ++..|+.+
T Consensus 246 ~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 246 LGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred CceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 99999999999999999999887653 34777777542 1234456666665544443 65 44556543
No 67
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.93 E-value=3.3e-24 Score=245.38 Aligned_cols=284 Identities=24% Similarity=0.291 Sum_probs=179.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee--------------
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------------- 137 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 137 (761)
.+-|+|+||+|||||||+++|+...-..... .|+|.+.....+.+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~---------------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~ 62 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREA---------------------GGITQHIGATEIPMDVIEGICGDLLKKF 62 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccC---------------------CceecccCeeEeeecccccccccccccc
Confidence 4569999999999999999997542211110 12333222222211
Q ss_pred ----cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHH
Q 004316 138 ----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVL 213 (761)
Q Consensus 138 ----~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~ 213 (761)
+...++|||||||.+|...+.++++.+|++|+|+|+++|+..||.+++..+...++|+++++||+|+........-
T Consensus 63 ~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 63 KIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred ccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccC
Confidence 1124899999999999999999999999999999999999999999999999999999999999998531100000
Q ss_pred HHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004316 214 DQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDM 293 (761)
Q Consensus 214 ~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~ 293 (761)
..+.+... .-+......+.+....++..+++.
T Consensus 143 ~~f~e~sa-----------------------------------------k~~~~v~~~~~~~~~~lv~~l~~~------- 174 (590)
T TIGR00491 143 RPFMESFS-----------------------------------------KQEIQVQQNLDTKVYNLVIKLHEE------- 174 (590)
T ss_pred chHHHHHH-----------------------------------------hhhHHHHHHHHHHHHHHHHHHHhc-------
Confidence 00000000 000011111112222222222211
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhh----CCCCcccccccccccCccceeeccCCC
Q 004316 294 FLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY----LPCPTEVSNYALDQKNNEEKVILSGNP 369 (761)
Q Consensus 294 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~----lPsp~~~~~~~~~~~~~~~~~~~~~~~ 369 (761)
.+..+.+.. + ...+..+|++.+||++|.|+++|++++..+ ++... ..++
T Consensus 175 -----G~~~e~~~~-i---~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l------------------~~~~ 227 (590)
T TIGR00491 175 -----GFEAERFDR-V---TDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQL------------------KLEE 227 (590)
T ss_pred -----CccHHhhhh-h---hhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhh------------------ccCC
Confidence 112211111 1 123456889999999999999999988653 22111 2356
Q ss_pred CCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCe--EEecCcEEEEec--------CceeecceecC--CC
Q 004316 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHS--------NEMEDIQEAHA--GQ 436 (761)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~i~~~~g--------~~~~~v~~a~a--Gd 436 (761)
++|+.+.|..++.+++ |.++.++|++|+|++||.|...+.+. ..+|..|+...+ .....++++.| |-
T Consensus 228 ~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~ 307 (590)
T TIGR00491 228 EGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGV 307 (590)
T ss_pred CCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCce
Confidence 7899999999999987 99999999999999999999987763 346766664432 12234555443 33
Q ss_pred EEEEecc-ccccCcee
Q 004316 437 IVAVFGV-DCASGDTF 451 (761)
Q Consensus 437 Iv~i~gl-~~~~GdtL 451 (761)
-+.+.|+ +...|+.+
T Consensus 308 ~v~~~~l~~~~aG~~~ 323 (590)
T TIGR00491 308 KIAAPGLDDVMAGSPI 323 (590)
T ss_pred eEEecCCCCCCCCCEE
Confidence 3444565 34455443
No 68
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.93 E-value=1.4e-25 Score=229.19 Aligned_cols=134 Identities=25% Similarity=0.382 Sum_probs=117.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeee--eec-----cCC---cccccccChhhhhhhcceeeeceEEEeecCeEEE
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIH--EVR-----GRD---GVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~--~v~-----~~~---~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (761)
||+++||+|||||||+++|++.+|.+.+.+ .++ .+. .+.+++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 799999999999999999999999987644 222 221 1345899999999999999999999999999999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCC-------CcchhHHHHHHHHHHcCC-CEEEEEeCCCCCCC
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVG-------GVQSQSITVDRQMRRYEV-PRLAFINKLDRMGA 207 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~-------g~~~qt~~~~~~~~~~~~-p~iiviNK~D~~~~ 207 (761)
+||||||.+|...+..+++.+|++|+|||+.+ +...|+..++..+...++ |+|+|+||+|+..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999999999999999999999999998 567789999988888874 67889999999743
No 69
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.8e-24 Score=213.76 Aligned_cols=130 Identities=42% Similarity=0.646 Sum_probs=112.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-----cCeEEEEEeC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQINIIDT 147 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDT 147 (761)
|||+++|++|+|||||+++|+...|.+.+.+ ....+.++.+.|+.+|+|.......+.| ++..++||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt 74 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDT 74 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC------CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEEC
Confidence 7999999999999999999999887764311 1145788888999999999888777755 4678999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (761)
|||.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+
T Consensus 75 ~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 75 PGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred CCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 9999999999999999999999999999988889888888888899999999999986543
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.93 E-value=4.5e-25 Score=223.76 Aligned_cols=134 Identities=26% Similarity=0.336 Sum_probs=117.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCcee--eeeec--------cCCcccccccChhhhhhhcceeeeceEEEeecCeEEE
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR--------GRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~--~~~v~--------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (761)
||+|+||+|||||||+++|++.+|.+.. .+.++ +.....+++|+.+.|+++|+|++.....+.|++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999999998862 22222 1112367899999999999999999999999999999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCC
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGA 207 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~ 207 (761)
|||||||.+|...+..+++.+|++|+|+|+..+...++..++..+...++| +|+|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999999999988888876 5678999998643
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.7e-24 Score=214.78 Aligned_cols=144 Identities=43% Similarity=0.619 Sum_probs=123.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
++|||+++|++|+|||||+++|++..+.+.....+. .+.+|+.+.|..+|+|+......+.+++..++|||||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~-----~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~ 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVE-----ERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCccc-----ccccccchhHHhcccccccceeEEEECCEEEEEEECCCc
Confidence 479999999999999999999998766654422221 356888889999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHH
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSK 219 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~ 219 (761)
.+|...+..+++.+|++++|+|++++...++..++..+...++|+++|+||+|+...+....++++.+.
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999988888888888888889999999999999766655555554443
No 72
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.92 E-value=1.2e-24 Score=200.71 Aligned_cols=119 Identities=43% Similarity=0.623 Sum_probs=112.1
Q ss_pred ceeeEEEeeeccce-eeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCc
Q 004316 540 PRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSL 618 (761)
Q Consensus 540 p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl 618 (761)
|+|+|||||+.+++ ....++++.|+.++|+.+.++++|.+ +++|.|.+.+.++.+|++|+++|++||++++.+|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 88999999999999999999999998 469999999999999999999999999999999999
Q ss_pred CCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004316 619 IGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 661 (761)
Q Consensus 619 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 661 (761)
+||||+||+|+|.++.+|+++|++.+|+.|+++||++||++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999985
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=1.5e-23 Score=213.59 Aligned_cols=131 Identities=37% Similarity=0.488 Sum_probs=115.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-----CeEEEEEeC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQINIIDT 147 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDT 147 (761)
|||+|+||+|+|||||+++|++..+.+.+.++... ...+++|..++|+++|+|+......+.+. .+.+++|||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~--~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDt 78 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGW--KPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDT 78 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccC--CceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEEC
Confidence 79999999999999999999999888765322222 23667899999999999999988888664 388999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
|||.+|...+..+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 79 pG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999999998889888888888899999999999985
No 74
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2e-23 Score=212.27 Aligned_cols=246 Identities=23% Similarity=0.263 Sum_probs=195.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee---------cCeEEE
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------KDYQIN 143 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---------~~~~i~ 143 (761)
.|++++||+|+|||||..+|.... . +...|..+...+||+|.+.....+.. +..+++
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~-----------S---TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~t 73 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELG-----------S---TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFT 73 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhc-----------c---chhhccCCcccccceeEeecceeeecccccccCccccceeE
Confidence 599999999999999999994321 1 45678889999999999988766643 236789
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChH-HHHHHHHHHhCC
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPW-KVLDQARSKLRH 222 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~-~~~~~i~~~l~~ 222 (761)
|+|+|||..+...+..+....|..++|||+..|.+.||.+.+-.........++|+||+|....+.. ..+++...++
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~-- 151 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKV-- 151 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999998888899999999998543211 1111111111
Q ss_pred ceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCCh
Q 004316 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (761)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (761)
T Consensus 152 -------------------------------------------------------------------------------- 151 (522)
T KOG0461|consen 152 -------------------------------------------------------------------------------- 151 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhcCcceeEeecccCCC----cchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEE
Q 004316 303 GDLEEAIRRATVARKFIPVFMGSAFKN----KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAF 378 (761)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~~SA~~~----~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 378 (761)
++.+. .+..+.-.|++.+||..| ++|++|.+.+.+.+--|. +|+.+||.++|.
T Consensus 152 ---~KtLe-~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~-------------------Rd~~gpflm~vD 208 (522)
T KOG0461|consen 152 ---RKTLE-STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK-------------------RDEEGPFLMAVD 208 (522)
T ss_pred ---HHHHH-hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC-------------------cCCCCCeEEEee
Confidence 11111 112233478899999999 899999999988776664 688999999999
Q ss_pred eeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe
Q 004316 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (761)
Q Consensus 379 k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 441 (761)
..+..++ |++..|.|.+|.++.|+.|-.+--+...||+.+..+ +.+|.+|.+||-.++.
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf----~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMF----KQRVTSAAAGDRAGFC 268 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHH----hhhhhhhhcccceeee
Confidence 9998887 999999999999999999999887777778766532 4578999999988753
No 75
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=9.9e-24 Score=226.41 Aligned_cols=200 Identities=19% Similarity=0.213 Sum_probs=160.9
Q ss_pred ccccccccccccccccccccccccc-CCCC-cchhhcc--CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC
Q 004316 34 AALLQGNFHLQSRQFSAGGNLARAK-DDKE-PWWKESM--ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD 109 (761)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~ 109 (761)
+=|+++++++|+.|+.+.++|++++ ..++ ....... .....|||+|.||+|||||+|+|+.+...+. .+.
T Consensus 136 slG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv-----~~~- 209 (444)
T COG1160 136 SLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIV-----SDI- 209 (444)
T ss_pred hcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEe-----cCC-
Confidence 3478899999999999999999988 4442 2211222 2567899999999999999999987766652 222
Q ss_pred cccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC----------CcH-HHHHHHHHhcCeEEEEEeCCCCcc
Q 004316 110 GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV----------DFT-VEVERALRVLDGAILVLCSVGGVQ 178 (761)
Q Consensus 110 ~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~----------~f~-~~~~~al~~aD~ailVvDa~~g~~ 178 (761)
.|+|+++....++|++..+.||||+|.. .|. ..+..++..||.+++|+||.+|+.
T Consensus 210 --------------aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~ 275 (444)
T COG1160 210 --------------AGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS 275 (444)
T ss_pred --------------CCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch
Confidence 7999999999999999999999999973 222 345788999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCe
Q 004316 179 SQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEK 258 (761)
Q Consensus 179 ~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~ 258 (761)
.|+..+...+.+.+.+++||+||||+...+
T Consensus 276 ~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-------------------------------------------------- 305 (444)
T COG1160 276 EQDLRIAGLIEEAGRGIVIVVNKWDLVEED-------------------------------------------------- 305 (444)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEccccCCch--------------------------------------------------
Confidence 999999999999999999999999985321
Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHH
Q 004316 259 IVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDG 338 (761)
Q Consensus 259 ~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~ 338 (761)
+.+.+++++.+++.+..-.|.|++++||++|.|++.|+++
T Consensus 306 ----------------------------------------~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 306 ----------------------------------------EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred ----------------------------------------hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHH
Confidence 0122334445555566678999999999999999999999
Q ss_pred HHhhC
Q 004316 339 VLSYL 343 (761)
Q Consensus 339 i~~~l 343 (761)
+....
T Consensus 346 i~~~~ 350 (444)
T COG1160 346 IKEIY 350 (444)
T ss_pred HHHHH
Confidence 87643
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=1.6e-23 Score=211.62 Aligned_cols=116 Identities=24% Similarity=0.323 Sum_probs=100.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--------------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------------- 138 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 138 (761)
+||+++||.|||||||+++|. ...+|+.+.|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~------------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS------------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYR 62 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh------------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccc
Confidence 589999999999999999993 223677888889999998888777775
Q ss_pred -------------C------eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-cchhHHHHHHHHHHcCC-CEEE
Q 004316 139 -------------D------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEV-PRLA 197 (761)
Q Consensus 139 -------------~------~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~~-p~ii 197 (761)
+ +.++|||||||.+|...+..+++.+|++++|+|+.++ ...++..++..+...++ |+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iii 142 (203)
T cd01888 63 SKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIII 142 (203)
T ss_pred cccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEE
Confidence 3 7899999999999999999999999999999999984 67888888888877776 5788
Q ss_pred EEeCCCCCC
Q 004316 198 FINKLDRMG 206 (761)
Q Consensus 198 viNK~D~~~ 206 (761)
|+||+|+..
T Consensus 143 vvNK~Dl~~ 151 (203)
T cd01888 143 VQNKIDLVK 151 (203)
T ss_pred EEEchhccC
Confidence 999999853
No 77
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.90 E-value=2.1e-23 Score=189.94 Aligned_cols=115 Identities=24% Similarity=0.302 Sum_probs=105.1
Q ss_pred eeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCC
Q 004316 542 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGH 621 (761)
Q Consensus 542 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~ 621 (761)
|.|||||+++++. . +.++.++++||++|+++++|++++ .++.|.+++.++.+|++|+++|++|++++|++||| ||
T Consensus 1 VaYRETI~~~~~~-~-~~~~~~~~~~~a~v~l~veP~~~g--~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG-V-EHIEVPPNPFWATVGLRVEPLPRG--SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE-E-EEEccCCCcEEEEEEEEEEECCCC--CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999998773 3 344455777899999999999865 47999999999999999999999999999999999 99
Q ss_pred CeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004316 622 PVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 661 (761)
Q Consensus 622 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 661 (761)
||+||+|+|.++.+|+++|++++|+.|+++|+++|+.+|+
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999874
No 78
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=1.5e-22 Score=202.77 Aligned_cols=119 Identities=26% Similarity=0.388 Sum_probs=104.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--------------C
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------------D 139 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------------~ 139 (761)
||+++||+|+|||||+++|+... + ...+|....|+++|+|+......+.+. +
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~---~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------S---TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEEN 67 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------c---hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccC
Confidence 79999999999999999997531 1 345688888999999999988877776 7
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+.+++||||||.+|...+..+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+..
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 8999999999999989988999999999999999999988988888777778999999999999863
No 79
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=5.8e-22 Score=202.39 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=112.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc-ccccccChhhhhhhcceeeece--------------------
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAA-------------------- 132 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~-------------------- 132 (761)
+|+++||.++|||||+++|.. +.. +++.. ....++.+..|.++|+|.....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~------~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~ 72 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GEL------DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS 72 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCc------CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc
Confidence 488999999999999999964 222 22221 1346788899999999874333
Q ss_pred ----EEEeecCeEEEEEeCCCCCCcHHHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 133 ----TSCAWKDYQINIIDTPGHVDFTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 133 ----~~~~~~~~~i~liDTPG~~~f~~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
..++..++.++|+|||||.+|...+.+++. .+|++++|+|+.+|...++..++.++...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 123345789999999999999999999986 79999999999999999999999999999999999999999865
Q ss_pred C-ChHHHHHHHHHHhC
Q 004316 207 A-DPWKVLDQARSKLR 221 (761)
Q Consensus 207 ~-~~~~~~~~i~~~l~ 221 (761)
. ...+.++++.+.+.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4 34566777777665
No 80
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.88 E-value=2.6e-22 Score=183.67 Aligned_cols=116 Identities=59% Similarity=0.951 Sum_probs=111.2
Q ss_pred EEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004316 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (761)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv 623 (761)
|||||.++++..+.+++++||.+||++|+++++|++++ .++.|.+++.++.+|++|+++|++|+++++++|||+||||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g--~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRG--SGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCC--CCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 99999999987799999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004316 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 661 (761)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 661 (761)
+||+|+|.++.+|+.+|++.+|+.|+++|+++|+.+|+
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 81
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.88 E-value=2.7e-22 Score=195.92 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=109.7
Q ss_pred CceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCC-------------------------------------
Q 004316 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 581 (761)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------- 581 (761)
+|.|+|||||...+...+..+. +++++++++.++|++++
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks----~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAET----PNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCceeeEC----CCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 5999999999987765444443 45567999999999642
Q ss_pred ------CCCCceeeecccCCC----CCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCcccc--CCCcHHHHHHHH
Q 004316 582 ------SPAKFEFENLLVGQA----IPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAA 649 (761)
Q Consensus 582 ------~~~~~~~~~~~~~~~----~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~ 649 (761)
..++|.|.|.+.+.. +.++++++|++||+||+++||||||||+||+|+|.++.+|. .++++++|+.|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 124588888776433 44678899999999999999999999999999999999998 789999999999
Q ss_pred HHHHHHHHHhcCCeEeeeeEEE
Q 004316 650 IYAFRQCYAAAKPVILEPVMLV 671 (761)
Q Consensus 650 ~~a~~~a~~~a~p~LlEPi~~~ 671 (761)
++||++|+++|+|+||||||.|
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999975
No 82
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.87 E-value=1.4e-20 Score=224.75 Aligned_cols=275 Identities=24% Similarity=0.261 Sum_probs=181.5
Q ss_pred hHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC------------------eEEEEEe
Q 004316 85 KTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------------YQINIID 146 (761)
Q Consensus 85 KSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------------~~i~liD 146 (761)
||||+++|-... + ......|||.+.....+.++. ..++|||
T Consensus 474 KTtLLD~iR~t~--------v-------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiD 532 (1049)
T PRK14845 474 NTTLLDKIRKTR--------V-------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFID 532 (1049)
T ss_pred cccHHHHHhCCC--------c-------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEE
Confidence 999999993211 1 122336899988888776652 1389999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC-CCChHHHHHHHHHHhCCcee
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM-GADPWKVLDQARSKLRHHCA 225 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~-~~~~~~~~~~i~~~l~~~~~ 225 (761)
||||.+|.....++++.+|++++|+|+.+|+..||..++..+...++|+++|+||+|+. +++.... .
T Consensus 533 TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~-~----------- 600 (1049)
T PRK14845 533 TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISED-E----------- 600 (1049)
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccc-h-----------
Confidence 99999999888888999999999999999999999999999999999999999999985 2221000 0
Q ss_pred eeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHH
Q 004316 226 AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDL 305 (761)
Q Consensus 226 ~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l 305 (761)
++-.++.....+...++-+.+.+.-.. |....+..+..
T Consensus 601 -------------------------------------~~~~~~~~q~~~~~~el~~~l~~v~~~-----L~~~G~~~e~~ 638 (1049)
T PRK14845 601 -------------------------------------PFLLNFNEQDQHALTELEIKLYELIGK-----LYELGFDADRF 638 (1049)
T ss_pred -------------------------------------hhhhhhhhhHHHHHHHHHHHHHHHhhH-----HHhcCcchhhh
Confidence 000000000111111111111000000 11111111111
Q ss_pred HHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC
Q 004316 306 EEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (761)
Q Consensus 306 ~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 385 (761)
. .+ -..+..+|++.+||++|.||+.|+++|....+.-.+ .....++++|+.+.|..++.+++
T Consensus 639 ~-~~---~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~--------------~~L~~~~~~~~~g~VlEv~~~kG 700 (1049)
T PRK14845 639 D-RV---QDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE--------------ERLKLNVEGYAKGTILEVKEEKG 700 (1049)
T ss_pred h-hh---hhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh--------------hhhccCCCCceEEEEEEEEEecC
Confidence 0 01 112466899999999999999999988654321110 00123567899999999999997
Q ss_pred -ccEEEEEEEcceecCCCEEEecCCCe--EEecCcEEEE--------ecCceeecceecCCCEEEEe--cc-ccccCcee
Q 004316 386 -GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRM--------HSNEMEDIQEAHAGQIVAVF--GV-DCASGDTF 451 (761)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~i~~~--------~g~~~~~v~~a~aGdIv~i~--gl-~~~~GdtL 451 (761)
|+++.+.|++|+|++||.|...+.+. ..+|..++.. .+.....++++.|+.-|-|. |+ +...|+.+
T Consensus 701 ~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~ 780 (1049)
T PRK14845 701 LGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPI 780 (1049)
T ss_pred ceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeE
Confidence 99999999999999999999987654 4566666532 12234577888887777664 77 56778765
Q ss_pred e
Q 004316 452 T 452 (761)
Q Consensus 452 ~ 452 (761)
.
T Consensus 781 ~ 781 (1049)
T PRK14845 781 R 781 (1049)
T ss_pred E
Confidence 4
No 83
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.87 E-value=8.3e-22 Score=180.64 Aligned_cols=116 Identities=30% Similarity=0.450 Sum_probs=110.9
Q ss_pred EEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCe
Q 004316 544 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 623 (761)
Q Consensus 544 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv 623 (761)
|||||.++++..+.+++++||.++|++|.++++|++++ .++.|.+++.++.+|++|+++|++||++++++|||+|+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~--~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERG--SGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCC--CCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 99999999988889999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004316 624 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 661 (761)
Q Consensus 624 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 661 (761)
+||+|+|.++.+|..++++++|+.|+++||++||++|+
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 84
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=2.1e-22 Score=170.82 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=74.6
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccCCe--EEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD--SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~--~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||+|+|.||++++|+|+++|++|||+|++++..++. +.|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998876554 8999999999999999999999999999999999999986
No 85
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=8.1e-21 Score=188.82 Aligned_cols=142 Identities=46% Similarity=0.686 Sum_probs=117.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
||+|+|.+|+|||||+++|+...........+. ...++....+..+|+|+......+.+.+..++||||||+.+|
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE-----ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee-----cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH
Confidence 589999999999999999987765543321111 245677788889999999888888899999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC-CChHHHHHHHHHHh
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSKL 220 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l 220 (761)
...+..+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.. .+.....+++.+.+
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888888999999999999975 33444455555444
No 86
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.86 E-value=1.6e-21 Score=179.63 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=105.4
Q ss_pred eeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCC--CCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcC
Q 004316 542 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSP--AKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLI 619 (761)
Q Consensus 542 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~ 619 (761)
|+|||||.++++..+++++++||.+||++|.++++|++++.. .++.|.+.+ ++.+|++|+++|++|+++++++|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 689999999988789999999999999999999999986642 246666555 78899999999999999999999999
Q ss_pred CCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004316 620 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 661 (761)
Q Consensus 620 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 661 (761)
||||+||+|+|.++.+|+.+|++..+ .|+++|+++|+.+|+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999987776655 889999999999874
No 87
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.86 E-value=1.7e-21 Score=169.26 Aligned_cols=88 Identities=43% Similarity=0.806 Sum_probs=83.1
Q ss_pred eEeeeeEEEEEeecccchhhHHHHHhcCCceeeccccc-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceec
Q 004316 663 VILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAP 741 (761)
Q Consensus 663 ~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 741 (761)
+||||||+++|.+|++++|+|+++|++|||+|.++... ++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999988 78999999999999999999999999999999999999999
Q ss_pred CChhHHHHH
Q 004316 742 VSQDVQLQL 750 (761)
Q Consensus 742 v~~~~~~~i 750 (761)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999998874
No 88
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=1.1e-21 Score=168.97 Aligned_cols=83 Identities=48% Similarity=0.868 Sum_probs=79.5
Q ss_pred EeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 664 ILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 664 LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||||.++|.||++++|+|+++|++|||+|.+++..++.+.|+|++|+++++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECC
Confidence 68999999999999999999999999999999999777789999999999999999999999999999999999999999
Q ss_pred hhH
Q 004316 744 QDV 746 (761)
Q Consensus 744 ~~~ 746 (761)
++.
T Consensus 81 ~~~ 83 (85)
T smart00838 81 KSI 83 (85)
T ss_pred hhh
Confidence 654
No 89
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=5.4e-20 Score=178.48 Aligned_cols=115 Identities=26% Similarity=0.359 Sum_probs=95.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-CeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~~ 152 (761)
+|+++|++|+|||||+++|... ..+..+.+..+++|+......+.+. +..+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~------------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI------------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc------------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH
Confidence 7999999999999999999521 0122344555788888777777776 78999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCC-CEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-PRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~-p~iiviNK~D~~~ 206 (761)
|...+..+++.+|++++|+|++++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 99888889999999999999999888888887777766676 8999999999854
No 90
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.84 E-value=1.5e-20 Score=185.01 Aligned_cols=128 Identities=26% Similarity=0.306 Sum_probs=107.9
Q ss_pred CceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCC-------------------------------------
Q 004316 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 581 (761)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------- 581 (761)
+|.|+|||||...+......+. .++.++++++++|++..
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s----~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKS----PNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCccEEEEc----CCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 5999999999987743232222 34457899999998632
Q ss_pred ------CCCCceeeecccCCCC----CcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccccC--CCcHHHHHHHH
Q 004316 582 ------SPAKFEFENLLVGQAI----PSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAV--DSSELAFKMAA 649 (761)
Q Consensus 582 ------~~~~~~~~~~~~~~~~----~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~ 649 (761)
..++|+|.|...+... +++|+++|++||++|+++||||||||+||+|+|.++.+|.. ++.+++|+.|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 1245888888776555 78999999999999999999999999999999999999986 78899999999
Q ss_pred HHHHHHHHHhcCCeEeeeeEE
Q 004316 650 IYAFRQCYAAAKPVILEPVML 670 (761)
Q Consensus 650 ~~a~~~a~~~a~p~LlEPi~~ 670 (761)
++||++|+++|+|+||||||.
T Consensus 157 r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 157 RRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHhhCCCEEEccccC
Confidence 999999999999999999984
No 91
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.84 E-value=6.6e-21 Score=159.21 Aligned_cols=75 Identities=44% Similarity=0.866 Sum_probs=70.6
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcC
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGK 539 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~ 539 (761)
||+|+++++|+|.++.|+++|.+||++|.+|||+|++.+|++|||++|+||||+||||+++||+++||++++++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999873
No 92
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.83 E-value=1.2e-20 Score=159.79 Aligned_cols=78 Identities=63% Similarity=0.990 Sum_probs=75.8
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999777889999999999999999999999999999999999999986
No 93
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.82 E-value=2.2e-20 Score=158.12 Aligned_cols=78 Identities=27% Similarity=0.489 Sum_probs=75.7
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||+++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999998877899999999999999999999999999999999999999974
No 94
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=195.04 Aligned_cols=113 Identities=23% Similarity=0.325 Sum_probs=99.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+.|+|+|.||+|||||+|+|+...-+| |++. .|+|.+......+|.++.|.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-----V~D~---------------pGvTRDr~y~~~~~~~~~f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-----VSDT---------------PGVTRDRIYGDAEWLGREFILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE-----eecC---------------CCCccCCccceeEEcCceEEEEECCCCCc
Confidence 579999999999999999997544333 3333 79999999999999999999999999864
Q ss_pred -----c----HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 153 -----F----TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 -----f----~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
| ..++..|+..||++|||||+.+|+.+++..+.+.++..++|+|+|+||+|-.
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 2 2346788999999999999999999999999999998889999999999964
No 95
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.82 E-value=3.4e-20 Score=157.14 Aligned_cols=78 Identities=53% Similarity=0.917 Sum_probs=75.8
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999877789999999999999999999999999999999999999986
No 96
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=2.1e-19 Score=202.74 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=116.9
Q ss_pred ccccccccccccccccccccccc-CCCCcch--hhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCccc
Q 004316 36 LLQGNFHLQSRQFSAGGNLARAK-DDKEPWW--KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVG 112 (761)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~ 112 (761)
++...+.+|+.|+.+...+++.. ..++... ....+...+|+++|++|+|||||+++|+.....+. .
T Consensus 133 g~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-----~------ 201 (429)
T TIGR03594 133 GFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIV-----S------ 201 (429)
T ss_pred CCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeec-----C------
Confidence 45578899999999988877765 2332211 11223457899999999999999999975432211 1
Q ss_pred ccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHH-----------HHHHHHHhcCeEEEEEeCCCCcchhH
Q 004316 113 AKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV-----------EVERALRVLDGAILVLCSVGGVQSQS 181 (761)
Q Consensus 113 ~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~-----------~~~~al~~aD~ailVvDa~~g~~~qt 181 (761)
...|+|.+.....+.+++..+.||||||+.++.. ....+++.+|++|+|+|+.++...++
T Consensus 202 ---------~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~ 272 (429)
T TIGR03594 202 ---------DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD 272 (429)
T ss_pred ---------CCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH
Confidence 1257888887788888889999999999865421 23567899999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 182 ITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 182 ~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
..+++.+...++|+++|+||+|+.
T Consensus 273 ~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 273 LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHHHcCCcEEEEEECcccC
Confidence 999999999999999999999986
No 97
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=4.3e-19 Score=200.49 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=114.5
Q ss_pred ccccccccccccccccccccccCC-CCcch-hhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCccccc
Q 004316 37 LQGNFHLQSRQFSAGGNLARAKDD-KEPWW-KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAK 114 (761)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~ 114 (761)
+..++..|+.|+.+...+.+.... .+... ........+|+|+|++|+|||||+++|+.....+. .
T Consensus 136 ~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-----~-------- 202 (435)
T PRK00093 136 LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIV-----S-------- 202 (435)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceee-----c--------
Confidence 345788888998888777665522 11100 11123467899999999999999999986443221 1
Q ss_pred ccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcH-----------HHHHHHHHhcCeEEEEEeCCCCcchhHHH
Q 004316 115 MDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT-----------VEVERALRVLDGAILVLCSVGGVQSQSIT 183 (761)
Q Consensus 115 ~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~-----------~~~~~al~~aD~ailVvDa~~g~~~qt~~ 183 (761)
..+|+|.+.....+.+++..+.||||||+.+.. ....++++.+|++|+|+|+.+|...|+..
T Consensus 203 -------~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~ 275 (435)
T PRK00093 203 -------DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR 275 (435)
T ss_pred -------CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH
Confidence 126888888888888899999999999974321 22456889999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCCC
Q 004316 184 VDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 184 ~~~~~~~~~~p~iiviNK~D~~ 205 (761)
++.++...++|+++++||||+.
T Consensus 276 i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 276 IAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHHHcCCcEEEEEECccCC
Confidence 9999999999999999999985
No 98
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.81 E-value=6e-20 Score=156.35 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=74.3
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccC--CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||+++|.+|++++|+|+++|++|||.|.+++..+ +...|+|++|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999988763 458999999999999999999999999999999999999986
No 99
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=5.7e-19 Score=180.30 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=92.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
--|||+|.||+|||||+|+|+.+.-+| +.+. ..+|.......+..++.++.|+||||.-.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisI-----vS~k---------------~QTTR~~I~GI~t~~~~QiIfvDTPGih~ 66 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRNRIRGIVTTDNAQIIFVDTPGIHK 66 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEe-----ecCC---------------cchhhhheeEEEEcCCceEEEEeCCCCCC
Confidence 459999999999999999998654443 2222 34455555666667789999999999632
Q ss_pred --------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 153 --------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 --------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
....+..++..+|++++|||+.++....++.++..+...+.|+|+++||+|+..
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 345567888999999999999999999999999999988899999999999854
No 100
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=5.4e-19 Score=200.74 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=114.5
Q ss_pred cccccccccccccccccccccccC-CCCcchh--hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCccc
Q 004316 36 LLQGNFHLQSRQFSAGGNLARAKD-DKEPWWK--ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVG 112 (761)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~ 112 (761)
+++.++++|+.|+.+..++.+... .++.... ......++|+++|++|+|||||+++|+.....+ +.
T Consensus 172 g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~-----~s------ 240 (472)
T PRK03003 172 GLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSV-----VD------ 240 (472)
T ss_pred CCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCccc-----cc------
Confidence 455678899999999888776552 2322111 112457899999999999999999997432211 11
Q ss_pred ccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC---------CcHHHH--HHHHHhcCeEEEEEeCCCCcchhH
Q 004316 113 AKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV---------DFTVEV--ERALRVLDGAILVLCSVGGVQSQS 181 (761)
Q Consensus 113 ~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---------~f~~~~--~~al~~aD~ailVvDa~~g~~~qt 181 (761)
...|+|++.....+.+++..+.||||||.. +|...+ ..+++.+|++|+|+|++++...+.
T Consensus 241 ---------~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~ 311 (472)
T PRK03003 241 ---------DVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQD 311 (472)
T ss_pred ---------CCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHH
Confidence 125778777777788889999999999963 233222 356789999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 182 ITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 182 ~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
..++..+...++|+|+|+||+|+..
T Consensus 312 ~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 312 QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999998889999999999999863
No 101
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.80 E-value=1.4e-19 Score=153.48 Aligned_cols=77 Identities=25% Similarity=0.547 Sum_probs=74.3
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
||||+++|.||++|+|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999865 67999999999999999999999999999999999999985
No 102
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1.4e-18 Score=169.39 Aligned_cols=115 Identities=32% Similarity=0.386 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec---CeEEEEEeCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDTPG 149 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG 149 (761)
+.|+|+|++|+|||||+++|+...-.. ....++|.......+.+. +..+++|||||
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG 59 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA---------------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPG 59 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc---------------------ccCCCeEEeeccEEEecccCCcceEEEEeCCC
Confidence 369999999999999999996421100 012355655555555554 78999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (761)
+.+|...+..+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+
T Consensus 60 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 60 HEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred cHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 99998888889999999999999999888888888888888999999999999986443
No 103
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=6.9e-19 Score=207.81 Aligned_cols=239 Identities=17% Similarity=0.155 Sum_probs=174.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+|+|. |...+. .+ ..|+|++.....+.++++++++|||||+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt---g~~~~v------------gn------~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT---GARQRV------------GN------WAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh---CCCCcc------------CC------CCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 579999999999999999994 321111 11 168899888888999999999999999988
Q ss_pred cHHH--------H--HHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC-CChHHHHHHHHHH
Q 004316 153 FTVE--------V--ERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSK 219 (761)
Q Consensus 153 f~~~--------~--~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~ 219 (761)
|... . ...+ ..+|++|+|+|+++.. +....+.++.+.++|+++|+||+|+.. .......+++.+.
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~ 140 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR 140 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH
Confidence 7531 1 1222 3789999999998853 345567788889999999999999863 3445667888899
Q ss_pred hCCceeeeeecCCCc-CccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC-CHHHHHHHhcC
Q 004316 220 LRHHCAAVQVPMGLE-DQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV-DDKLGDMFLSD 297 (761)
Q Consensus 220 l~~~~~~~~~pi~~~-~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~-dd~l~e~~l~~ 297 (761)
++.++.++..+.+.+ +.+.+.++... +. .+ ....+.|+++.+.+.+.+..+.+.+++. ++.++.+|+++
T Consensus 141 LG~pVvpiSA~~g~GIdeL~~~I~~~~------~~-~~--~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEg 211 (772)
T PRK09554 141 LGCPVIPLVSTRGRGIEALKLAIDRHQ------AN-EN--VELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEG 211 (772)
T ss_pred hCCCEEEEEeecCCCHHHHHHHHHHhh------hc-cC--CcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcC
Confidence 998888777776655 33333333221 10 01 1124567777777888888887777765 78889999998
Q ss_pred CCCChh------HHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhC
Q 004316 298 EPISSG------DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYL 343 (761)
Q Consensus 298 ~~~~~~------~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~l 343 (761)
+....+ ++.+.+++........|.+++++.+..+++.+++.++...
T Consensus 212 D~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 212 DIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred chHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 755544 4455555555555567889999999999999999998654
No 104
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.79 E-value=2.3e-19 Score=152.43 Aligned_cols=78 Identities=49% Similarity=0.914 Sum_probs=75.9
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 743 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 743 (761)
||||.++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|++|+++++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999999877 899999999999999999999999999999999999999985
No 105
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.79 E-value=6.2e-19 Score=181.23 Aligned_cols=283 Identities=18% Similarity=0.222 Sum_probs=205.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcc-cccccChhhhhhhcceeeeceE-------------------
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLEREKGITIQSAAT------------------- 133 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~-~~~~d~~~~e~~~giTi~~~~~------------------- 133 (761)
+|+++|.+|+|||||+..|.+ ++.+++... .+.+..+..|.+.|-|.....-
T Consensus 135 RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred EEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCC
Confidence 699999999999999987742 334444322 2344555666666655433322
Q ss_pred EEeec------CeEEEEEeCCCCCCcHHHHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 134 SCAWK------DYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 134 ~~~~~------~~~i~liDTPG~~~f~~~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+++|- -..++|||.+||+.|...+.-++ ...|...++|-++.|+-..|.+++.++...++|+++|++|+|..
T Consensus 207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred cccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence 22332 16799999999999998887776 45799999999999999999999999999999999999999999
Q ss_pred CCCh-HHHHHHHHHHhCCceeeeeecC--CCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHH
Q 004316 206 GADP-WKVLDQARSKLRHHCAAVQVPM--GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIEL 282 (761)
Q Consensus 206 ~~~~-~~~~~~i~~~l~~~~~~~~~pi--~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~ 282 (761)
.++. ++.+.-+.+.+..... ..+|+ .+.++ ++ ..+..
T Consensus 287 PANiLqEtmKll~rllkS~gc-rK~PvlVrs~DD------Vv-~~A~N-------------------------------- 326 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGC-RKLPVLVRSMDD------VV-HAAVN-------------------------------- 326 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCc-ccCcEEEecccc------eE-Eeecc--------------------------------
Confidence 8884 4556666665543211 11221 11110 00 00000
Q ss_pred HhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccce
Q 004316 283 VSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEK 362 (761)
Q Consensus 283 ~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~ 362 (761)
+...+.+|+|-+|..+|.++. ||.++.+.++.-..
T Consensus 327 ------------------------------F~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~-------------- 361 (641)
T KOG0463|consen 327 ------------------------------FPSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ-------------- 361 (641)
T ss_pred ------------------------------CccccccceEEeccccCCChH-HHHHHHhhcCcccc--------------
Confidence 112357999999999999997 77777788775431
Q ss_pred eeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCe----EEecCcEEEEecCceeecceecCCCE
Q 004316 363 VILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK----KIKVPRLVRMHSNEMEDIQEAHAGQI 437 (761)
Q Consensus 363 ~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~----~~~i~~i~~~~g~~~~~v~~a~aGdI 437 (761)
.+.+.|.-.+|-.+|+.|. |+++.+...+|+|+.+|.+...+... ...|+.|. +++.+|..+++|+.
T Consensus 362 ----~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQt 433 (641)
T KOG0463|consen 362 ----LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQT 433 (641)
T ss_pred ----cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccch
Confidence 3467788899999999998 99999999999999999998876532 34566664 77889999999998
Q ss_pred EE--Eecc---ccccCceeecCCCc
Q 004316 438 VA--VFGV---DCASGDTFTDGSVK 457 (761)
Q Consensus 438 v~--i~gl---~~~~GdtL~~~~~~ 457 (761)
.. +.++ +++.|.++.++...
T Consensus 434 ASFALKKIkr~~vRKGMVmVsp~lk 458 (641)
T KOG0463|consen 434 ASFALKKIKRKDVRKGMVMVSPKLK 458 (641)
T ss_pred hhhHhhhcchhhhhcceEEecCCCC
Confidence 54 5566 78899998887543
No 106
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=1.3e-18 Score=206.71 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=114.9
Q ss_pred ccccccccccccccccccccccc-CCCCcchh-h---ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc
Q 004316 36 LLQGNFHLQSRQFSAGGNLARAK-DDKEPWWK-E---SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG 110 (761)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~ 110 (761)
++..++++|+.|+.+..++.+.. ..++.... . ..+..++|+++|++|+|||||+|+|+.....+ +.
T Consensus 409 g~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~-----v~---- 479 (712)
T PRK09518 409 GLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAV-----VN---- 479 (712)
T ss_pred CCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccc-----cC----
Confidence 34567889999999988887655 22222111 1 12456899999999999999999997543211 11
Q ss_pred ccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC---------CcHHH--HHHHHHhcCeEEEEEeCCCCcch
Q 004316 111 VGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV---------DFTVE--VERALRVLDGAILVLCSVGGVQS 179 (761)
Q Consensus 111 ~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~---------~f~~~--~~~al~~aD~ailVvDa~~g~~~ 179 (761)
...|+|.+.....+.+++..+.||||||+. +|... ...+++.+|++|+|+|++++.+.
T Consensus 480 -----------~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~ 548 (712)
T PRK09518 480 -----------DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISE 548 (712)
T ss_pred -----------CCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCH
Confidence 125778777777788899999999999974 23222 24567899999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 180 QSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 180 qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
++..++..+...++|+++|+||||+..
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 999999999889999999999999853
No 107
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.78 E-value=4.7e-19 Score=150.42 Aligned_cols=77 Identities=18% Similarity=0.388 Sum_probs=73.7
Q ss_pred eeeEEEEEeecccchhhHHHHHhcCCceeecccccC-CeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 666 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 666 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
|||++++|.||++++|+|+++|++|||+|++++..+ +...|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999999765 58999999999999 599999999999999999999999986
No 108
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=2e-18 Score=164.43 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=83.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.||+|||||+|+|+... .+.+ ++ +|+|+......+.+.+..+.|+||||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---~~v~------------n~------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---QKVG------------NW------PGTTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---EEEE------------ES------TTSSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ceec------------CC------CCCCeeeeeEEEEecCceEEEEECCCcccC
Confidence 69999999999999999995432 2221 11 688999999999999999999999997544
Q ss_pred H------HHHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 154 T------VEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 154 ~------~~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
. ..+..++ ...|++|+|+||+. ..+...+..++.+.++|+++++||+|.
T Consensus 61 ~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 61 SSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp SSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHH
T ss_pred CCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 2 1123344 47899999999987 467778888999999999999999996
No 109
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.7e-18 Score=189.40 Aligned_cols=244 Identities=22% Similarity=0.221 Sum_probs=159.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--------------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------------- 138 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 138 (761)
+-+||+||+|.|||-|++.+-.. .|..+ -.-|||.+...++|...
T Consensus 476 PIcCilGHVDTGKTKlld~ir~t--------NVqeg-------------eaggitqqIgAt~fp~~ni~e~tk~~~~~~K 534 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGT--------NVQEG-------------EAGGITQQIGATYFPAENIREKTKELKKDAK 534 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcc--------ccccc-------------cccceeeeccccccchHHHHHHHHHHHhhhh
Confidence 46899999999999999999421 12222 11356666666555432
Q ss_pred ----CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHH
Q 004316 139 ----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLD 214 (761)
Q Consensus 139 ----~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~ 214 (761)
--.+.+||||||..|.....++...||.||+|||..+|+.+||.+.+.+++..+.|+||++||+|+...+-..-..
T Consensus 535 ~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 535 KRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 2358899999999999999999999999999999999999999999999999999999999999986321000000
Q ss_pred HHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004316 215 QARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMF 294 (761)
Q Consensus 215 ~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 294 (761)
.+.+.|... ..+.+..+......++-.+++..-. .+.|
T Consensus 615 ~i~~~lkkQ-----------------------------------------~k~v~~EF~~R~~~ii~efaEQgLN-~~Ly 652 (1064)
T KOG1144|consen 615 PIVEALKKQ-----------------------------------------KKDVQNEFKERLNNIIVEFAEQGLN-AELY 652 (1064)
T ss_pred hHHHHHHHh-----------------------------------------hHHHHHHHHHHHHHHHHHHHHcccc-hhhe
Confidence 000000000 0011111111222222222221100 1112
Q ss_pred hcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcE
Q 004316 295 LSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLV 374 (761)
Q Consensus 295 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 374 (761)
.++. -++.++-++.+||.+|.||..||-+|+++...-... .-..-..+.
T Consensus 653 ykNk---------------~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~----------------kl~y~~ev~ 701 (1064)
T KOG1144|consen 653 YKNK---------------EMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE----------------KLAYVDEVQ 701 (1064)
T ss_pred eecc---------------cccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH----------------HHhhhhhee
Confidence 2221 256788899999999999999999998764332100 011233456
Q ss_pred EEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC
Q 004316 375 ALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG 410 (761)
Q Consensus 375 ~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~ 410 (761)
|.|..+-..++ |+-.-+-+..|.|+.||.|.+.+.+
T Consensus 702 cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~ 738 (1064)
T KOG1144|consen 702 CTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQ 738 (1064)
T ss_pred eEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCC
Confidence 67777666665 8877777889999999999987654
No 110
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=7.7e-18 Score=177.78 Aligned_cols=111 Identities=23% Similarity=0.147 Sum_probs=81.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.|+++|++|+|||||+|+|+...-.+ +.+. .++|...........+.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-----vs~~---------------~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-----TSPK---------------AQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-----cCCC---------------CCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999997532111 1111 334444333334456678999999998542
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 154 --------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 --------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
...+..+++.+|++++|+|++.+...+ ..++..+...+.|+++|+||+|+.
T Consensus 62 ~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 62 KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223456789999999999999875554 566777778899999999999985
No 111
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=1.2e-17 Score=181.42 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=87.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+++|++|+|||||+|+|+...-.+ +.. ..++|.......+.+++.+++||||||
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-----vs~---------------k~~tTr~~~~~~~~~~~~qi~~~DTpG 109 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-----VTP---------------KVQTTRSIITGIITLKDTQVILYDTPG 109 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-----ccC---------------CCCCccCcEEEEEEeCCeEEEEEECCC
Confidence 355689999999999999999997432111 111 134455544556677889999999999
Q ss_pred CCCc--------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HVDF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f--------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.+. ......+++.+|++|+|+|+.++....+..++..+...+.|.++|+||+|+.
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 8542 2223446789999999999998877777777777777889999999999985
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.75 E-value=1.8e-17 Score=161.64 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=82.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
||+++|++|+|||||+++|....... .+ .... ....|+......+.+++..+.+|||||+.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~--------~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KG--------LPPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cC--------Cccc--ccCCccccceEEEEECCEEEEEEECCCChhh
Confidence 68999999999999999997542210 00 0000 1123444444566778899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHHHH----HcCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~~----~~~~p~iiviNK~D~~~~ 207 (761)
...+...++.+|++|+|+|+.+..... ....+..+. ..++|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 998999999999999999998643211 122222222 357999999999998643
No 113
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=2.4e-17 Score=158.47 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=88.1
Q ss_pred EEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHH
Q 004316 76 GISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV 155 (761)
Q Consensus 76 ~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~ 155 (761)
+++|++|+|||||+++|+...... .. ...++|.........++++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-----~~---------------~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-----VE---------------DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-----ec---------------CCCCceeCceeEEEEECCeEEEEEECCCCCCchh
Confidence 589999999999999996421100 01 1135566666666778889999999999988654
Q ss_pred --------HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 156 --------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 156 --------~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+...++.+|++++|+|+.++....+..+++++...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 61 GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 456778999999999999988888888888888888999999999999864
No 114
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.9e-17 Score=169.02 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=197.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccc-cccChhhhhhhcceeeeceEEEeec-------------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA-KMDSMDLEREKGITIQSAATSCAWK------------- 138 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~-~~d~~~~e~~~giTi~~~~~~~~~~------------- 138 (761)
.+++++|..|+|||||+.-|.. +..++|.+..+ -+..++.|...|-|.......+.++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQ--------geLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQ--------GELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeeec--------ccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 3699999999999999987742 33444433222 2445566666666554433332221
Q ss_pred --------CeEEEEEeCCCCCCcHHHHHHHHHh--cCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-
Q 004316 139 --------DYQINIIDTPGHVDFTVEVERALRV--LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA- 207 (761)
Q Consensus 139 --------~~~i~liDTPG~~~f~~~~~~al~~--aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~- 207 (761)
.+.++|||.+||.+|...+..+|.. .|.|++||+|..|+.-.|++++..+...++|++++++|+|+...
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 2679999999999999988888864 69999999999999999999999999999999999999999754
Q ss_pred ChHHHHHHHHHHhC---CceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHh
Q 004316 208 DPWKVLDQARSKLR---HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVS 284 (761)
Q Consensus 208 ~~~~~~~~i~~~l~---~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~ 284 (761)
..+++++++.+.+. ....|.-+
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~V------------------------------------------------------- 344 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRV------------------------------------------------------- 344 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEe-------------------------------------------------------
Confidence 34667777666553 22222111
Q ss_pred cCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceee
Q 004316 285 EVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (761)
Q Consensus 285 ~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 364 (761)
-+.++-..+-+. .....++|+|+.|..+|.|++ |+..+.+.||+-..+... .
T Consensus 345 ---------------t~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e~----------~- 396 (591)
T KOG1143|consen 345 ---------------TTKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEER----------I- 396 (591)
T ss_pred ---------------echHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChHHH----------H-
Confidence 011111122222 456789999999999999998 555666777654321110 0
Q ss_pred ccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCC--C--eEEecCcEEEEecCceeecceecCCCEEE
Q 004316 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--G--KKIKVPRLVRMHSNEMEDIQEAHAGQIVA 439 (761)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~ 439 (761)
.-...|.-..|-.+|..|. |.++-|-+-+|.++.|+.+.+.+. | .+.+|..|. +.+.++..+.||+-..
T Consensus 397 --~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAs 470 (591)
T KOG1143|consen 397 --QLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAAS 470 (591)
T ss_pred --HHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCcccee
Confidence 1123456677888888898 999999999999999999998764 3 344566665 6677888999999776
Q ss_pred Eec-c----ccccCceeec
Q 004316 440 VFG-V----DCASGDTFTD 453 (761)
Q Consensus 440 i~g-l----~~~~GdtL~~ 453 (761)
+.= . .++.|.+|..
T Consensus 471 lsl~d~D~~~LR~GMVl~~ 489 (591)
T KOG1143|consen 471 LSLNDPDGVSLRRGMVLAE 489 (591)
T ss_pred eeccCCCccchhcceEEee
Confidence 531 1 2455655544
No 115
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=7.8e-17 Score=157.33 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+.....+. +..+++|.......+..++..+++|||||+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV--------------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec--------------------cCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 45799999999999999999974322110 0114555555556667778889999999985
Q ss_pred CcH-----------HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 152 DFT-----------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 152 ~f~-----------~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 62 ~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 62 RKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred cccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 541 12345678999999999999998888888888888889999999999998643
No 116
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.74 E-value=1.4e-17 Score=143.28 Aligned_cols=83 Identities=29% Similarity=0.472 Sum_probs=78.3
Q ss_pred CCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-cccc
Q 004316 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCAS 447 (761)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~ 447 (761)
++||+++|||+.+|++ |+++|+|||||+|++||.|++.. ++.+++.+|+.++|.+..+++++.|||||++.|+ ++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3699999999999998 99999999999999999999887 6678999999999999999999999999999999 8999
Q ss_pred Cceeec
Q 004316 448 GDTFTD 453 (761)
Q Consensus 448 GdtL~~ 453 (761)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999963
No 117
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=5e-17 Score=183.45 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=94.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC--
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV-- 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-- 151 (761)
.|+|+|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.|++..++||||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~-----v~~---------------~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~ 60 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI-----VSD---------------TPGVTRDRKYGDAEWGGREFILIDTGGIEED 60 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce-----ecC---------------CCCcccCceEEEEEECCeEEEEEECCCCCCc
Confidence 38999999999999999997432211 111 15788888888889999999999999984
Q ss_pred ------CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 152 ------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ------~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+...+..+++.+|++++|+|+..+....+..+++.+++.++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 61 DDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred chhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 3445677889999999999999999999999999999999999999999999753
No 118
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=9.6e-17 Score=156.39 Aligned_cols=114 Identities=20% Similarity=0.157 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
..++|+++|++|+|||||+++|+.. .. ... ....++.+.....+.+++ ..++|||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~~------~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 60 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--TF------SER-------------QGNTIGVDFTMKTLEIEGKRVKLQIWDTA 60 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CC------ccc-------------CCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 4589999999999999999999531 11 000 001111222233344554 588999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH-H---HcCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~-~---~~~~p~iiviNK~D~~ 205 (761)
|+.+|...+...++.+|++++|+|+.+....+....|... . ..++|+++|+||+|+.
T Consensus 61 G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred ChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999998889999999999999999987655554444332 2 2478999999999985
No 119
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1e-16 Score=182.15 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=95.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
..+++|+|+|++|+|||||+++|+.....+ +. ...|+|.+.....+.|.+..++||||||
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~-----v~---------------~~~gvT~d~~~~~~~~~~~~~~l~DT~G 95 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV-----VE---------------DVPGVTRDRVSYDAEWNGRRFTVVDTGG 95 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc-----cc---------------CCCCCCEeeEEEEEEECCcEEEEEeCCC
Confidence 456899999999999999999996432111 11 1257888877778889999999999999
Q ss_pred CCC--------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HVD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~--------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.. |...+..+++.||++|+|+|++.+.......++..+...++|+++|+||+|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 96 WEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 863 44556778999999999999999988877888888888999999999999985
No 120
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=1.8e-16 Score=155.01 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=76.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCe-EEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG~~~ 152 (761)
||+++|++|||||||+++|...... +.. ..+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~------v~~---------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK------IAD---------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc------ccC---------------CCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 6999999999999999999632111 111 023344444445556666 999999999742
Q ss_pred -------cHHHHHHHHHhcCeEEEEEeCCCC-cchhHHHHHH-HHHH-----cCCCEEEEEeCCCCCC
Q 004316 153 -------FTVEVERALRVLDGAILVLCSVGG-VQSQSITVDR-QMRR-----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 -------f~~~~~~al~~aD~ailVvDa~~g-~~~qt~~~~~-~~~~-----~~~p~iiviNK~D~~~ 206 (761)
+.....+.++.+|++++|+|++.+ -..+....|. .+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 61 GASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred cccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 344455667789999999999986 3334433332 2322 3689999999999853
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=1.5e-16 Score=154.11 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=78.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|......... .. ...|.+ ...+.+++..+++|||||+.+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~---------------~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~ 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---IV---------------PTVGFN----VESFEKGNLSFTAFDMSGQGKY 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---ec---------------Cccccc----eEEEEECCEEEEEEECCCCHhh
Confidence 5899999999999999999532110000 00 001222 2234567889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHH------HHcCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM------RRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~------~~~~~p~iiviNK~D~~~~ 207 (761)
...+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 59 RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999999987643221 1112222 1247999999999998653
No 122
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=3e-16 Score=167.78 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=83.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
-..|+++|++|+|||||+|+|+...-.+ +.+. .++|..........++.++.+|||||+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~-----vs~~---------------~~tt~~~i~~i~~~~~~qi~~iDTPG~~ 64 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRHRIRGIVTEDDAQIIFVDTPGIH 64 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee-----cCCC---------------CCcccccEEEEEEcCCceEEEEECCCCC
Confidence 3569999999999999999997432211 1111 1223322222333456799999999985
Q ss_pred Cc--------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 152 DF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f--------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+. ...+..++..+|++++|+|+..+.......++..+...++|+++|+||+|+.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 65 KPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 53 2345567889999999999998777777788888877789999999999985
No 123
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=2.1e-16 Score=155.48 Aligned_cols=112 Identities=22% Similarity=0.214 Sum_probs=78.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
.-.+|+++|++|+|||||+++|+... . . .. +...|. ....+.+++..+++|||||+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~------~---------~~---~~t~g~----~~~~~~~~~~~l~l~D~~G~ 68 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--I------D---------TI---SPTLGF----QIKTLEYEGYKLNIWDVGGQ 68 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--C------C---------Cc---CCcccc----ceEEEEECCEEEEEEECCCC
Confidence 34679999999999999999996320 0 0 00 001122 22234456789999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHH----HHHcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQ----MRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~----~~~~~~p~iiviNK~D~~~ 206 (761)
..|...+...++.+|++|+|+|+.+...... ...+.. ....++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 69 KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 9998888889999999999999987632221 111222 1235789999999999864
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=1.8e-16 Score=153.37 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++++|||||+++|.... . .++. . |+......+.+.+..+.+|||||+.+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~---------------~~~~-----~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--V---------------VTTI-----P--TIGFNVETVTYKNLKFQVWDLGGQTSI 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--C---------------cCcC-----C--ccCcCeEEEEECCEEEEEEECCCCHHH
Confidence 48999999999999999994311 0 0000 0 111122245567889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHH-HHH---HcCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDR-QMR---RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~-~~~---~~~~p~iiviNK~D~~~~ 207 (761)
...+..+++.+|++|+|+|+++..... ....+. ... ..++|+++|+||+|+..+
T Consensus 57 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 988899999999999999998753222 122222 222 247899999999998644
No 125
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.70 E-value=6.9e-17 Score=138.55 Aligned_cols=81 Identities=36% Similarity=0.667 Sum_probs=77.3
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCce
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDT 450 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 450 (761)
|+++|||+++|++ |+++|+|||+|+|++||.|++...++.+++.+|+.++|.+..+++++.||||+++.|+ ++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 5799999999998 9999999999999999999999888889999999999999999999999999999999 8999999
Q ss_pred eec
Q 004316 451 FTD 453 (761)
Q Consensus 451 L~~ 453 (761)
|+.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 974
No 126
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=2e-16 Score=153.73 Aligned_cols=113 Identities=20% Similarity=0.244 Sum_probs=80.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++|+|||||+++++...- ... .....+.++......+......+++|||||+..|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY--------EPQ-----------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--------CCC-----------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 699999999999999999974211 000 0001122333223334445578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHHc--CCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~--~~p~iiviNK~D~~ 205 (761)
...+..+++.+|++|+|+|++++...+....|. ..... ++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999999999998876655544443 33333 78999999999973
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=2.8e-16 Score=151.85 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=78.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++|+|||||+++++... ... ...|+......+.+.+..+.+|||||+..|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVT----------------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKI 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCC----------------------CCCCcCcceEEEEECCEEEEEEECCCChhh
Confidence 48999999999999999996432 000 011222223345567889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcc-hhHHHHHHH----HHHcCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQ----MRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~-~qt~~~~~~----~~~~~~p~iiviNK~D~~~ 206 (761)
.......++.+|++++|+|++.+.. ......+.. +...+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 8888889999999999999997622 122223322 2235889999999999864
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.70 E-value=3.7e-16 Score=152.47 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=74.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
|+|+++|++|+|||||+++|+...... ....+.|.......+.+++..++||||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV---------------------APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc---------------------CCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 589999999999999999996421100 00123444444455566788999999999853
Q ss_pred cH--------HHHHHHH-HhcCeEEEEEeCCCCcc---hhHHHHHHHHHHc--CCCEEEEEeCCCCCC
Q 004316 153 FT--------VEVERAL-RVLDGAILVLCSVGGVQ---SQSITVDRQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~--------~~~~~al-~~aD~ailVvDa~~g~~---~qt~~~~~~~~~~--~~p~iiviNK~D~~~ 206 (761)
.. .....++ ..+|++|+|+|++.... ......+..+... ++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 60 RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 21 1112222 33699999999986532 1222344444444 799999999999853
No 129
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.69 E-value=2.3e-16 Score=152.79 Aligned_cols=101 Identities=21% Similarity=0.174 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC--
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (761)
++|+++|++|+|||||+++|..... . .. ....+.|... .+|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~----------------~------------~~--~~~~v~~~~~--~~iDtpG~~~ 49 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT----------------L------------AR--KTQAVEFNDK--GDIDTPGEYF 49 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc----------------c------------Cc--cceEEEECCC--CcccCCcccc
Confidence 4799999999999999999842100 0 00 0111222222 37999996
Q ss_pred --CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 --~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
.++..++..+++.+|++|+|+|++++....+..++.. ..++|+++++||+|+...
T Consensus 50 ~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 50 SHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 4566677778899999999999998765544433332 347899999999998543
No 130
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=2.4e-16 Score=151.96 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=80.7
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHHH
Q 004316 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (761)
Q Consensus 77 iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~ 156 (761)
++|++|+|||||++++..... . .....|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---K------------------VGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---c------------------ccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC
Confidence 589999999999999953210 0 0012577887777778888899999999999877642
Q ss_pred ------HHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 157 ------VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 157 ------~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
...++. .+|++|+|+|+... .+....+.++...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 60 SEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred ChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 344454 89999999999874 3344555667778999999999999853
No 131
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=1.1e-15 Score=148.43 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (761)
-+|+++|.+|+|||||+++++...... .+.+ .+...-...+.++ ...+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~----------------~~~~------t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT----------------DYDP------TIEDSYTKQCEIDGQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc----------------ccCC------CccceEEEEEEECCEEEEEEEEECCCC
Confidence 479999999999999999997532110 0000 0000011112233 357899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHH----HHcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQM----RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~----~~~~~p~iiviNK~D~~ 205 (761)
.+|...+...++.+|++++|+|+++....+...-| ... ...++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 99999999999999999999999875443333222 122 22478999999999985
No 132
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=4.6e-16 Score=184.95 Aligned_cols=117 Identities=23% Similarity=0.363 Sum_probs=97.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
...+++|+|+|++|+|||||+|+|+.....+ +.+ ..|+|.+.......|++..+++||||
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-----v~~---------------~pGvT~d~~~~~~~~~~~~~~liDT~ 331 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV-----VED---------------TPGVTRDRVSYDAEWAGTDFKLVDTG 331 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee-----ecC---------------CCCeeEEEEEEEEEECCEEEEEEeCC
Confidence 3457899999999999999999997432111 111 26888888888888999999999999
Q ss_pred CCCC--------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 149 GHVD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~--------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
|+.. |...+..+++.+|++|+|+|+.++.......+++.+...++|+++|+||+|+.
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9753 45566788999999999999999988888888888889999999999999974
No 133
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.69 E-value=1.7e-16 Score=135.40 Aligned_cols=81 Identities=75% Similarity=1.249 Sum_probs=77.2
Q ss_pred cEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEeccccccCceee
Q 004316 373 LVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFT 452 (761)
Q Consensus 373 ~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~GdtL~ 452 (761)
|+++|||+.+|++|+++|+|||+|+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+++++||||+
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~~~~Gdtl~ 80 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGIDCASGDTFT 80 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCCcccCCEec
Confidence 57999999999889999999999999999999999988889999999999999999999999999999999999999996
Q ss_pred c
Q 004316 453 D 453 (761)
Q Consensus 453 ~ 453 (761)
+
T Consensus 81 ~ 81 (81)
T cd04091 81 D 81 (81)
T ss_pred C
Confidence 3
No 134
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=7e-17 Score=162.37 Aligned_cols=243 Identities=21% Similarity=0.282 Sum_probs=172.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec----------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---------- 138 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------- 138 (761)
.+-..||+-+||+.|||||++.++ +|.- +-..+.|-+|.||++..+.+....
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAi---SGv~---------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP 96 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAI---SGVH---------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRP 96 (466)
T ss_pred heeeeeecceeccccCcceeeeee---ccce---------------EEEehhhhhcceeEEeccccceEEecCCCCCCCc
Confidence 345679999999999999999877 2221 112345667888887777654320
Q ss_pred -------------------C--------eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-cchhHHHHHHHHHH
Q 004316 139 -------------------D--------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRR 190 (761)
Q Consensus 139 -------------------~--------~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-~~~qt~~~~~~~~~ 190 (761)
+ +.+.|+|+|||.-+...|..+....|+|++++.+++. .++||-+++.....
T Consensus 97 ~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei 176 (466)
T KOG0466|consen 97 GCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI 176 (466)
T ss_pred chhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH
Confidence 0 5688999999999999999999999999999999875 68999999999888
Q ss_pred cCCCE-EEEEeCCCCCCCC-hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhh
Q 004316 191 YEVPR-LAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADM 268 (761)
Q Consensus 191 ~~~p~-iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~ 268 (761)
+++.. +++-||+|+...+ ..+..+++.+.+
T Consensus 177 M~LkhiiilQNKiDli~e~~A~eq~e~I~kFi------------------------------------------------ 208 (466)
T KOG0466|consen 177 MKLKHIIILQNKIDLIKESQALEQHEQIQKFI------------------------------------------------ 208 (466)
T ss_pred hhhceEEEEechhhhhhHHHHHHHHHHHHHHH------------------------------------------------
Confidence 88876 5555999986432 112222222221
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcc
Q 004316 269 ETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTE 348 (761)
Q Consensus 269 ~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~ 348 (761)
.+. . ..-.|++.+||.-+.+|+.+.++|++.+|-|.
T Consensus 209 ---------------------------~~t--------------~--ae~aPiiPisAQlkyNId~v~eyivkkIPvPv- 244 (466)
T KOG0466|consen 209 ---------------------------QGT--------------V--AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV- 244 (466)
T ss_pred ---------------------------hcc--------------c--cCCCceeeehhhhccChHHHHHHHHhcCCCCc-
Confidence 110 0 11257888899999999999999999999986
Q ss_pred cccccccccCccceeeccCCCCCCcEEEEEeeeecc---------CccEEEEEEEcceecCCCEEEecCC-------Ce-
Q 004316 349 VSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR---------FGQLTYLRIYEGVIRKGDFIINVNT-------GK- 411 (761)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---------~G~l~~~RV~sG~l~~g~~v~~~~~-------~~- 411 (761)
+|...|..+.|.+.+... .|-++-|.+..|.|+.||.|-+.+. |+
T Consensus 245 ------------------Rdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~ 306 (466)
T KOG0466|consen 245 ------------------RDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNI 306 (466)
T ss_pred ------------------cccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcE
Confidence 456667777787776542 2669999999999999999987542 11
Q ss_pred EEe--cCcEEEEecCceeecceecCCCEEEE
Q 004316 412 KIK--VPRLVRMHSNEMEDIQEAHAGQIVAV 440 (761)
Q Consensus 412 ~~~--i~~i~~~~g~~~~~v~~a~aGdIv~i 440 (761)
..+ .++|..+.+ +..+.+.|.+|-.+++
T Consensus 307 ~C~Pi~SrI~sL~A-E~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 307 KCRPIFSRIVSLFA-EQNDLQFAVPGGLIGV 336 (466)
T ss_pred EEeeHHHHHHHHHh-hhccceeecCCceeee
Confidence 111 123322333 3346778888877665
No 135
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=145.00 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=104.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGH 150 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 150 (761)
-.+|+|+|+.++||||++.++.+....+.... ... +... ..|.+|+.....++.+++ +.+.|+|||||
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-~~~--------~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEAD-ASS--------VSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQ 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecc-ccc--------cccc--cccceeEeecccceEEcCcceEEEecCCCc
Confidence 35799999999999999999987654432210 000 0000 034578877788887776 89999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC-CCEEEEEeCCCCCCCChHHHHHH
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDRMGADPWKVLDQ 215 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~-~p~iiviNK~D~~~~~~~~~~~~ 215 (761)
.+|.-.+.-.++.++++|++||++.+.....+.+++.....+ +|++|++||.|+.++.+.+.+.+
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e 144 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIRE 144 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHH
Confidence 999999999999999999999999988877788888888877 99999999999988765444433
No 136
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=5.4e-16 Score=150.32 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=80.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++++|||||+++|+...-.... ....|.........++.....++||||||+.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-------------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-------------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHH
Confidence 7999999999999999999743211000 000122222222333333468899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-H---HHcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M---RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~---~~~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|++++...+....|.. . ...++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 9888899999999999999998766655444432 2 23478999999999984
No 137
>PRK04213 GTP-binding protein; Provisional
Probab=99.67 E-value=8.5e-16 Score=154.95 Aligned_cols=124 Identities=21% Similarity=0.302 Sum_probs=80.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|.... . .....+|+|..... +.+. .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~---~------------------~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK---V------------------RVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---C------------------ccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 45689999999999999999995321 0 01112466665433 3333 6899999995
Q ss_pred C-----------CcHHHHHH----HHHhcCeEEEEEeCCCC-----------cchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 151 V-----------DFTVEVER----ALRVLDGAILVLCSVGG-----------VQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 151 ~-----------~f~~~~~~----al~~aD~ailVvDa~~g-----------~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
. .|...+.. .+..+|++++|+|+... ...++..++..+...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 2 23333222 34457899999998643 2234566777777789999999999998
Q ss_pred CCCChHHHHHHHHHHh
Q 004316 205 MGADPWKVLDQARSKL 220 (761)
Q Consensus 205 ~~~~~~~~~~~i~~~l 220 (761)
.... .+..+++.+.+
T Consensus 143 ~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 143 IKNR-DEVLDEIAERL 157 (201)
T ss_pred cCcH-HHHHHHHHHHh
Confidence 6433 22334443333
No 138
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=6.8e-16 Score=150.79 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+..++|+++|++|+|||||+++|+.. .. ..+ ....++.+.....+.+.+ ..+.+|||
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~--~~------~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~ 63 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQG--LF------PPG-------------QGATIGVDFMIKTVEIKGEKIKLQIWDT 63 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC--CC------CCC-------------CCCceeeEEEEEEEEECCEEEEEEEEEC
Confidence 45789999999999999999999631 11 111 001122223333344555 56888999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH----HHHHcCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR----QMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~----~~~~~~~p~iiviNK~D~~ 205 (761)
||+.+|......+++.+|++|+|+|+.++...+....|. .....++|+++|+||+|+.
T Consensus 64 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 64 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999899999999999999998765544433442 2223478999999999984
No 139
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.67 E-value=1.2e-15 Score=147.75 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=78.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe----ecCeEEEEEeCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----WKDYQINIIDTPG 149 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----~~~~~i~liDTPG 149 (761)
+|+++|.+++|||||+++|+...- ... ..+.+..+.....+. .....++||||||
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--------TKD-------------YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------CCC-------------CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc
Confidence 699999999999999999964210 000 001111221111222 2347899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|.......++.+|++++|+|+++....+....|..... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999989999999999999999987655555544443322 389999999999984
No 140
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.67 E-value=2.6e-16 Score=135.07 Aligned_cols=79 Identities=22% Similarity=0.496 Sum_probs=75.5
Q ss_pred EEEEeeee---ccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCc
Q 004316 375 ALAFKLEE---GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGD 449 (761)
Q Consensus 375 ~~V~k~~~---~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gd 449 (761)
++|||+.+ +|+ |+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|+ ++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 998 9999999999999999999999888889999999999999999999999999999999 899999
Q ss_pred eeec
Q 004316 450 TFTD 453 (761)
Q Consensus 450 tL~~ 453 (761)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
No 141
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=1.2e-15 Score=150.30 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
.++|+++|++|+|||||+++|+... . ... ..|+......+.+++..+.+|||||+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~---------------~~~-------~~t~~~~~~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--V---------------VHT-------SPTIGSNVEEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--C---------------CCc-------CCccccceEEEEECCeEEEEEECCCCH
Confidence 4689999999999999999995311 0 000 112222334566778899999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhH-HH-HHHHHHH---cCCCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-IT-VDRQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~-~~~~~~~---~~~p~iiviNK~D~~~ 206 (761)
.|...+..+++.+|++|+|+|+++...... .. +...+.. .++|+++++||+|+.+
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 999889999999999999999987533221 12 2222222 3689999999999864
No 142
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=9.2e-16 Score=173.39 Aligned_cols=113 Identities=22% Similarity=0.310 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++|+|+|++|+|||||+++|+.....+ +.+ ..|+|.+.....+.|.+..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~-----v~~---------------~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI-----VAD---------------TPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-----eCC---------------CCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 479999999999999999996432111 111 257777777778889999999999999987
Q ss_pred --------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 153 --------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 --------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+...+..+++.+|++|+|+|+.++....+..+..++...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 62 DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 33445678899999999999999988888888888888999999999999964
No 143
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.67 E-value=2.9e-16 Score=134.79 Aligned_cols=81 Identities=46% Similarity=0.786 Sum_probs=77.2
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCce
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDT 450 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 450 (761)
|+|+|||+.+|++ |+++|+|||+|+|++||.|++.+.++.+++.+|+.++|.+..+++++.||||+++.|+ ++++|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 5799999999997 9999999999999999999999988889999999999999999999999999999999 8999999
Q ss_pred eec
Q 004316 451 FTD 453 (761)
Q Consensus 451 L~~ 453 (761)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 974
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=9.7e-16 Score=152.27 Aligned_cols=113 Identities=23% Similarity=0.233 Sum_probs=77.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEE-eecCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC-AWKDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~i~liDTPG~~~ 152 (761)
+|+++|++|+|||||++++++.... ... ...|.+........ .+.+..+++|||||+.+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~-----------------~~~---~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV-----------------NTV---PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK 64 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC-----------------CcC---CccccceeEEEeeccCCCceEEEEEECCCcHh
Confidence 5999999999999999999642211 000 00122222211111 33568899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHH-----HHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-----TVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~-----~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
|...+...++.+|++|+|+|+++....... .++......++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 988888889999999999999875332222 222333446799999999999853
No 145
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=1.6e-15 Score=147.19 Aligned_cols=111 Identities=19% Similarity=0.120 Sum_probs=79.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+++|++|+|||||+++|+...- .. ...+.++.......+.+.+ ..+++|||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--------SE-------------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------CC-------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 699999999999999999963211 00 0011222222233344444 688999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++|+|+|+.+....+....|.. ... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999888999999999999999988665555444432 222 468999999999974
No 146
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=1.2e-15 Score=149.30 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|.... . ..+.+ .-|.++ ..+.+.+..+.||||||+.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~---------------~~~~~---t~g~~~----~~~~~~~~~~~l~Dt~G~~~ 65 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--S---------------VTTIP---TVGFNV----ETVTYKNVKFNVWDVGGQDK 65 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--C---------------ccccC---Ccccce----EEEEECCEEEEEEECCCCHH
Confidence 589999999999999999995311 0 00000 012222 23345678999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
|...+..+++.+|++|+|+|+++..... ....|.... ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9888888999999999999998753222 222232222 24689999999999853
No 147
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.66 E-value=1.1e-15 Score=152.63 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=79.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+-.+|+++|+.|+|||||+++|.... ... ...|+......+.+.+..+.++||||+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~--~~~----------------------~~~T~~~~~~~i~~~~~~~~l~D~~G~ 73 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDR--LAQ----------------------HVPTLHPTSEELTIGNIKFKTFDLGGH 73 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------------------cCCccCcceEEEEECCEEEEEEECCCC
Confidence 34679999999999999999995311 000 001222233445667889999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHHH----HHcCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~----~~~~~p~iiviNK~D~~~~ 207 (761)
.+|...+..+++.+|++++|+|+.+..... ....+... ...+.|+++++||+|+...
T Consensus 74 ~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 74 EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 999888888999999999999998642221 12222222 2356999999999998643
No 148
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.66 E-value=1.6e-15 Score=147.12 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=78.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++++|||||+++|+...-.. ......|.+.......+...+..+.+|||||+.+|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~ 63 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE-------------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-------------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 69999999999999999997432100 00111233333333344444578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH---cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|++........ ..+..+.. .++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88888889999999999999865433322 22233333 357899999999975
No 149
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=1.4e-15 Score=148.38 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|.+|+|||||+++|+...-. . .+.+ ..|++..............+.+|||||+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~--------~--------~~~~---t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~ 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT--------S--------AFVS---TVGIDFKVKTVFRNDKRVKLQIWDTAGQER 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--------C--------CCCC---ceeeEEEEEEEEECCEEEEEEEEECCChHH
Confidence 47999999999999999999642100 0 0000 012222222222222346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (761)
|.......++.+|++++|+|+++....+...-|. .... .+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 9998899999999999999998654433333332 2222 367899999999985
No 150
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.66 E-value=2.3e-15 Score=147.56 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=76.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||+++|.... . ..+ ..|+......+++.+..+.+|||||+.+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~---------------~~~-------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~ 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F---------------MQP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKL 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C---------------CCc-------CCcCceeEEEEEECCEEEEEEECCCChhc
Confidence 48899999999999999995321 0 000 11222222345667899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
...+...++.+|++|+|+|+++...... ...+.... ..+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 57 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 9888899999999999999986422211 22222222 13479999999999853
No 151
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=2.8e-15 Score=145.63 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=75.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++|+|||||+++++...-.. ++.+.. + +.......+......+.+|||||+.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~----------------~~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 61 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD----------------DYDPTI---E-DSYRKQIEIDGEVCLLDILDTAGQEEF 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCch---h-hhEEEEEEECCEEEEEEEEECCCcccc
Confidence 69999999999999999997432110 000000 0 001111122223467889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HH----HHcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QM----RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~----~~~~~p~iiviNK~D~~ 205 (761)
.......++.+|++++|+|++.....+....|. .. ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 62 SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 998899999999999999998754433333322 11 22368999999999985
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=1.6e-15 Score=145.65 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=83.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++|+|||||+++|+...... ..+ ..++|.......+.+.+..+++|||||+.++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI-----VSD---------------IAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe-----ccC---------------CCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 69999999999999999996432111 001 1455666555667778889999999999876
Q ss_pred HHH--------HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 154 TVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~--------~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
... +...++.+|++++|+|+...........+.. ..+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 63 EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 432 3456789999999999998666665555554 56899999999999853
No 153
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=5.1e-15 Score=143.13 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=81.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++|+++|++|+|||||+++|+...-.. +.+. ...+.......+...+..+.+|||||+.+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~-----~~~~---------------~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEe-----ccCC---------------CCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 579999999999999999996431100 0111 11222223333445568899999999865
Q ss_pred cHH--------HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 153 FTV--------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~--------~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
... .....+..+|++++|+|+.+........+++.+...+.|.++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 432 34556889999999999998866666777777877889999999999985
No 154
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.65 E-value=1.7e-15 Score=146.78 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=78.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++|+|||||+++|+....... .+...+.+.......+......+.+|||||+.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-------------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-------------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 689999999999999999964221100 0111233333222333333468999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-H----HHcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M----RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~----~~~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|+++....+....|.. + ...++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 8888888999999999999987655444443422 2 23578899999999985
No 155
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.65 E-value=8.2e-16 Score=166.16 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=95.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+++|+|.||+|||||+|+|+.+..+| |.+- .|+|.+.....+..+|+.+.|+||+|..+
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AI-----VTdI---------------~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAI-----VTDI---------------AGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceE-----ecCC---------------CCCccceEEEEEEECCEEEEEEecCCccc
Confidence 489999999999999999999876665 3333 79999999999999999999999999864
Q ss_pred cHHH--------HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 153 FTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 153 f~~~--------~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
-... ...++..||.+++|+|++++...+...++. +...+.|+++|+||.|+...
T Consensus 278 t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 278 TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 3222 345678999999999999987777777777 66678999999999999643
No 156
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=2.8e-15 Score=151.22 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-ecCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~~ 152 (761)
+|+++|.+|+|||||+++|+... . ... +. ...|.........+. .....+.||||||+..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~------~~~--------~~---~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~ 62 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--F------SQH--------YK---ATIGVDFALKVIEWDPNTVVRLQLWDIAGQER 62 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--C------CCC--------CC---CceeEEEEEEEEEECCCCEEEEEEEECCCchh
Confidence 69999999999999999996421 0 000 00 001111112222222 2357889999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HH-------HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR-------RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~-------~~~~p~iiviNK~D~~ 205 (761)
|...+...++.+|++|+|+|.+.....+....|.. +. ..++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 63 FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 99888899999999999999987655554444432 11 2468999999999985
No 157
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.65 E-value=1.9e-15 Score=146.37 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=80.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+++|++++|||||+++|+...-.. +...+++.+.....+.+++ ..+++|||||+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN---------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc---------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 79999999999999999996432111 1113344444344444444 579999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-H-HHc--CCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M-RRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~-~~~--~~p~iiviNK~D~~ 205 (761)
+|...+...++.+|++|+|+|+++....+....|.. . ... ++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 999888999999999999999987655444433332 2 233 48999999999984
No 158
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.65 E-value=2.6e-15 Score=146.84 Aligned_cols=115 Identities=20% Similarity=0.119 Sum_probs=81.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
.-+|+++|++|+|||||+++++...-.... + ...|.++.............++||||||+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~-----~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------D-----LTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------C-----CccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 358999999999999999999642110000 0 012333333333333344689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++|+|+|++.....+....|.. ... .++|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 998888899999999999999997655555544433 222 368999999999984
No 159
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.65 E-value=2.9e-15 Score=146.33 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=79.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|.+|+|||||+++++... . ... +. ...|++.......+......+.+|||||+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~--f------~~~--------~~---~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDS--F------NPS--------FI---STIGIDFKIRTIELDGKKIKLQIWDTAGQ 62 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCc--C------Ccc--------cc---cCccceEEEEEEEECCEEEEEEEEeCCch
Confidence 35689999999999999999996421 0 000 00 00122222222222222367899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
.+|.......++.+|++|+|+|++++...+....|.. ... .++|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 63 ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999888889999999999999987655444333332 222 368999999999985
No 160
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.65 E-value=3.2e-15 Score=144.97 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=76.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||++++... .. ..+.+. -|.. ...+......+.||||||+..|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~---------------~~~~pt---~g~~----~~~~~~~~~~~~l~D~~G~~~~ 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EI---------------VTTIPT---IGFN----VETVEYKNISFTVWDVGGQDKI 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CC---------------cccCCC---CCcc----eEEEEECCEEEEEEECCCCHhH
Confidence 5899999999999999999521 11 011110 1221 1234456789999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcch-hHHHHHHHHHH----cCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~-qt~~~~~~~~~----~~~p~iiviNK~D~~~ 206 (761)
...+..+++.+|++|+|+|+++.... +....|..... .+.|+++++||+|+..
T Consensus 58 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 58 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 98888999999999999999864221 12222333222 3589999999999854
No 161
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.65 E-value=6.8e-15 Score=142.17 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=74.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|+...-. .. +.+. .+.+. .....+......+++|||||+.+|
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~--------~~--------~~~t---~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV--------DE--------YDPT---IEDSY-RKQVVIDGETCLLDILDTAGQEEY 62 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--------CC--------cCCc---chheE-EEEEEECCEEEEEEEEECCCCcch
Confidence 6999999999999999999742110 00 0000 00011 111122222356889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHH----HcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~~p~iiviNK~D~~ 205 (761)
...+...++.+|++++|+|..+....+....| .... ..++|+++|+||+|+.
T Consensus 63 ~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 63 SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999865433333222 2222 2478999999999985
No 162
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=3.5e-15 Score=147.13 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|..++|||||+++|... .. .++. + |+......+.+++..+.||||||+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~--~~---------------~~~~-----~--t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG--ES---------------VTTI-----P--TIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CC---------------CCcC-----C--ccccceEEEEECCEEEEEEECCCCh
Confidence 357999999999999999999521 10 0110 1 1111122345677899999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcc-hhHHHHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~-~qt~~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
+|...+...++.+|++|+|+|+++... ......+..+.. .++|+++|+||+|+.+.
T Consensus 69 ~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 69 KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999988999999999999999986432 222333433322 36899999999998643
No 163
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=2.9e-15 Score=146.63 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+++|++|+|||||+++|+...- ... . ....|.+.. ...+.+.+ ..+++|||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~--------~~~--------~---~~t~~~~~~--~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF--------SNQ--------Y---KATIGADFL--TKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------CcC--------c---CCccceEEE--EEEEEECCEEEEEEEEeCCChH
Confidence 699999999999999999964211 000 0 000111111 12233333 567899999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH--HHH------cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ--MRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~--~~~------~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++|+|+|+.++...+....|.. ... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 999888899999999999999987654333333322 111 278999999999985
No 164
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=2.3e-15 Score=149.74 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=79.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+-.+|+++|.+|+|||||+++|.... ... +. .|.......+.+++..+.++||||+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~--~~~---~~-------------------~t~~~~~~~~~~~~~~~~~~D~~G~ 71 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDR--LAQ---HQ-------------------PTQHPTSEELAIGNIKFTTFDLGGH 71 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCC--Ccc---cC-------------------CccccceEEEEECCEEEEEEECCCC
Confidence 34689999999999999999995321 000 00 0111222344567889999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHHH----HHcCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~----~~~~~p~iiviNK~D~~~~ 207 (761)
..+...+..+++.+|++|+|+|+++..... ....+..+ ...++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 999888899999999999999998753222 22222222 2257899999999998643
No 165
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.64 E-value=2.9e-15 Score=150.84 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=80.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
.|+++|..|+|||||+.+++... . .. +....++.+.....+.+++ ..++||||+|+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f------~~-------------~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--F------CE-------------ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--C------CC-------------cCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 48899999999999999996321 1 00 0011122222222344444 788999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~iiviNK~D~~ 205 (761)
+|...+..+++.+|++|+|+|+++....+....|..... .++|+++|.||+|+.
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999999999999999999998766666555544322 368999999999984
No 166
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=3.3e-15 Score=145.25 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=77.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++++|||||+++|+...-.. . +. ...|.+.......+......++||||||+.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~--------~--------~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS--------K--------YL---PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------C--------CC---CccceeEEEEEEEECCeEEEEEEEECCccHHH
Confidence 69999999999999999997421100 0 00 00122222222233334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH--------cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--------YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--------~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|+++....+....|.. +.. .+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 8888888999999999999987654444333322 211 358899999999984
No 167
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.64 E-value=4.7e-15 Score=143.76 Aligned_cols=113 Identities=19% Similarity=0.113 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|.+|+|||||+++++...-. . .+.+.. + ........+......+.||||||+.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~--------------~~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--E--------------KYDPTI---E-DSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--c--------------ccCCch---h-hhEEEEEEECCEEEEEEEEECCCccc
Confidence 37999999999999999999742110 0 000000 0 00111122222336788999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
|.......++.+|++++|+|.++.........| ..+.. .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 998888899999999999999875443333222 22322 368999999999984
No 168
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=4.4e-15 Score=144.74 Aligned_cols=115 Identities=21% Similarity=0.153 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+.+|+++|.+|+|||||+++++...-.. . +.+ ..|.+.......+......+.+|||||+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~--------~--------~~~---t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE--------S--------YIS---TIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CCC---ccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 3579999999999999999996321100 0 000 01222222222222223678999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++|+|+|+++.........|.. ... .++|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 63 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 999888899999999999999987544333333322 222 368999999999974
No 169
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=7.8e-15 Score=142.69 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=75.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 151 (761)
+|+++|.+|+|||||+++++. +.... . + ..++.......+..+ .+.++||||||+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~------~--------~------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVE------K--------Y------DPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCc------c--------c------CCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 699999999999999999973 21110 0 0 000001111123333 4677899999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~----~~~~p~iiviNK~D~~ 205 (761)
.|.......++.+|++|+|+|.+.....+...- +.... ..++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 61 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred cchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999999999999999999999876544333222 22222 2468999999999984
No 170
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=5e-15 Score=144.16 Aligned_cols=113 Identities=20% Similarity=0.149 Sum_probs=77.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
..+|+++|.+++|||||+++|+...-.. . + .+.++.......+..++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------~-----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 61 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--------D--------S-----KSTIGVEFATRSIQIDGKTIKAQIWDTAG 61 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------C-----CCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 4589999999999999999996321100 0 0 01122222222233333 5789999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|.......++.+|++|+|+|+.+....+...-|.. +.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99998888889999999999999987544444333322 222 258999999999974
No 171
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.64 E-value=2e-15 Score=149.44 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=83.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.++..+|+|+|++|+|||||+++|+..... .. +.+ ..|.|..... +.++ ..+.+||||
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~---~~~---------------~~~~t~~~~~--~~~~-~~~~liDtp 72 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL-AR---TSK---------------TPGRTQLINF--FEVN-DGFRLVDLP 72 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc---ccC---------------CCCcceEEEE--EEeC-CcEEEEeCC
Confidence 356789999999999999999999643210 00 011 1344444332 2223 379999999
Q ss_pred CCC----------CcHHHHHHHHH---hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 149 GHV----------DFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~----------~f~~~~~~al~---~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
|+. +|...+..+++ .+|++++|+|+..+...++..+++.+...++|+++++||+|+..
T Consensus 73 G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 73 GYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 963 23333444554 46899999999999999999889999889999999999999853
No 172
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=5.2e-15 Score=146.73 Aligned_cols=112 Identities=20% Similarity=0.184 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|..++|||||+++|.. +.. ... ....|.+ ...+++++..++||||||+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~---------------~~~---~pt~g~~----~~~~~~~~~~~~i~D~~Gq~ 72 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEI---------------VTT---IPTIGFN----VETVEYKNISFTVWDVGGQD 72 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCC---------------ccc---cCCccee----EEEEEECCEEEEEEECCCCH
Confidence 35799999999999999999952 111 000 0011222 23456678999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHHH----HcCCCEEEEEeCCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR----RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~~----~~~~p~iiviNK~D~~~~ 207 (761)
.|...+...++.+|++|+|+|+++...... ...+.... ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 999888999999999999999987533222 11222221 136899999999998654
No 173
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=3e-15 Score=146.26 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=77.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..|+|||||+++++... . ... + ....|+.+.......+.+...+.+|||||+.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~------~~~--------~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--F------EKK--------Y---VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C------CCC--------C---CCceeeEEEEEEEEECCEEEEEEEEECCCChhh
Confidence 69999999999999999997421 1 000 0 000122222222222334578999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHHc--CCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~--~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|++++...+....|. .+... ++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 63 GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 877777889999999999999876655544442 22222 79999999999984
No 174
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=4.8e-15 Score=144.62 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|+.|+|||||+++++.. .... +. + ...|.++......+......+.||||||+.+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~--------------~~-~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 63 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMA--------------DC-P--HTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC--------------CC-C--cccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 57999999999999999999632 1100 00 0 0012222222222333346789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
|...+...++.+|++|+|+|+++....+....|.. ... .+.|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 64 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999999999999999998655555444433 222 357899999999985
No 175
>PTZ00369 Ras-like protein; Provisional
Probab=99.63 E-value=5.3e-15 Score=147.72 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|.+|+|||||+++++...-. . .+.+. .|.+. .....++.....++||||||+.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~--~--------------~~~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI--D--------------EYDPT---IEDSY-RKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--c--------------CcCCc---hhhEE-EEEEEECCEEEEEEEEeCCCCcc
Confidence 57999999999999999999742110 0 00000 01111 11222333446789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HH----HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~----~~~~p~iiviNK~D~~ 205 (761)
|...+..+++.+|++|+|+|+++....+....|.. .. ..++|+++|+||+|+.
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999988654444333332 22 2378999999999974
No 176
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=4e-15 Score=149.75 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=76.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+++|+.|+|||||+++|+...- ... + ..++.......+.+++ ..++||||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--------~~~--------~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--------EPK--------Y------RRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--------Ccc--------C------CCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 489999999999999999974211 000 0 0001111122344444 678999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHH----HcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~----~~~~p~iiviNK~D~~ 205 (761)
+|......+++.+|++|+|+|+++....+....|. .+. ..++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 99888888999999999999998764444333332 222 2479999999999985
No 177
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=4.2e-15 Score=144.08 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=75.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|+...-.- ++.+.. +.. ......+......+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~----------------~~~~~~---~~~-~~~~~~~~~~~~~~~i~D~~g~~~~ 61 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE----------------DYEPTK---ADS-YRKKVVLDGEDVQLNILDTAGQEDY 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc----------------ccCCcc---hhh-EEEEEEECCEEEEEEEEECCChhhh
Confidence 79999999999999999997422100 000000 000 0111223334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHHH----HcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~~----~~~~p~iiviNK~D~~ 205 (761)
......+++.+|++++|+|....-.... ...+.... ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 9999999999999999999876432211 11222222 2579999999999985
No 178
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=5.5e-15 Score=146.09 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=77.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe----------ecCe
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----------WKDY 140 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------~~~~ 140 (761)
...+|+++|.+|+|||||+++++...- .+. +. ...|.+.......+. ....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~--------~~~--------~~---~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF--------NPK--------FI---TTVGIDFREKRVVYNSSGPGGTLGRGQRI 63 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--------Ccc--------CC---CccceEEEEEEEEEcCccccccccCCCEE
Confidence 356899999999999999999964211 000 00 001111111111111 1236
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH----cCCCEEEEEeCCCCC
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~iiviNK~D~~ 205 (761)
.+.||||||+.+|.......++.+|++|+|+|+++....+...-|.. ... .+.|+++|.||+|+.
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 78999999999999989999999999999999987555444443332 222 367899999999984
No 179
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.63 E-value=4.1e-15 Score=150.61 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
...+.-+|++||.||+|||||+|.|+...-.. +. ++..+|.......+.-+..++.|.||
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-----vS---------------~K~~TTr~~ilgi~ts~eTQlvf~DT 127 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-----VS---------------RKVHTTRHRILGIITSGETQLVFYDT 127 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccc-----cc---------------ccccceeeeeeEEEecCceEEEEecC
Confidence 34578899999999999999999997432111 11 11345677777777788899999999
Q ss_pred CCCC------------CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc-CCCEEEEEeCCCCC
Q 004316 148 PGHV------------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~------------~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~~p~iiviNK~D~~ 205 (761)
||.+ .|......|+..||.+++|+|+.+.-....-++++.+.++ ++|-|+|.||+|..
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred CcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 9963 2344567889999999999999864344445566666554 78999999999985
No 180
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=5.2e-15 Score=159.66 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (761)
+-+..|+|+|.+|||||||+++|...... +.++ .++|+......+.+ ++..+.++|||
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~---------------va~y------pfTT~~p~~G~v~~~~~~~~~i~D~P 214 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPK---------------IADY------PFTTLHPNLGVVRVDDYKSFVIADIP 214 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCc---------------cCCC------CCceeCceEEEEEeCCCcEEEEEeCC
Confidence 45678999999999999999999542111 1111 35577777777777 45789999999
Q ss_pred CCCC-------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH-----cCCCEEEEEeCCCCCC
Q 004316 149 GHVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR-----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~-------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~-----~~~p~iiviNK~D~~~ 206 (761)
|..+ +.....+.++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 215 Gli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 215 GLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 9853 444566777889999999999864333443333 33333 3689999999999853
No 181
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=6.5e-15 Score=148.90 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCe-EEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTP 148 (761)
+.+++|+|+|++|||||||+++|+...... .+. .+.|+......+.+.+. .+.+||||
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~------~~~---------------~~~t~~~~~~~~~~~~~~~~~i~Dt~ 97 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA------EDQ---------------LFATLDPTTRRLRLPDGREVLLTDTV 97 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc------CCc---------------cceeccceeEEEEecCCceEEEeCCC
Confidence 356799999999999999999996432110 000 12233333344445443 89999999
Q ss_pred CCCCc-HH-------HHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHH---HHcCCCEEEEEeCCCCCC
Q 004316 149 GHVDF-TV-------EVERALRVLDGAILVLCSVGGVQSQSITVD-RQM---RRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~f-~~-------~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~---~~~~~p~iiviNK~D~~~ 206 (761)
|+.+. .. .....+..+|++++|+|++++........| ... ...++|+++|+||+|+..
T Consensus 98 G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 98 GFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 98432 11 122345689999999999987554443222 222 234689999999999853
No 182
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=5.8e-15 Score=162.41 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG 149 (761)
-+-.|+|+|.+|||||||+|+|+..... +.+. .++|.......+.+.+ ..+.|+||||
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~------vs~~---------------p~TT~~p~~Giv~~~~~~~i~~vDtPG 216 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPK------VADY---------------PFTTLVPNLGVVRVDDERSFVVADIPG 216 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCccc------ccCC---------------CCCccCcEEEEEEeCCCcEEEEEeCCC
Confidence 4558999999999999999999643211 1111 4567777777777765 4699999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCC----CcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVG----GVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~----g~~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (761)
..+ +...+.+.+..+|++++|+|+.. ....+...+++.+.. .+.|.++|+||+|+.
T Consensus 217 i~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 217 LIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred ccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 854 34456678899999999999872 122222344444444 368999999999985
No 183
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.62 E-value=5.1e-15 Score=145.13 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 149 (761)
..+|+++|++|+|||||+++++... . ... ....+........+.+. .+.+++|||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~------~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F------PER-------------TEATIGVDFRERTVEIDGERIKVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C------CCc-------------cccceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 4689999999999999999996311 0 000 01112222222233333 37899999999
Q ss_pred CCCcHH-HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH----cCCCEEEEEeCCCCC
Q 004316 150 HVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~-~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~iiviNK~D~~ 205 (761)
+.+|.. .....++.+|++|+|+|++.....+....|.. +.. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999874 46677899999999999998877776666653 333 358999999999984
No 184
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=8.1e-15 Score=140.66 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=76.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcH
Q 004316 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~ 154 (761)
|+++|++|+|||||+++|....-. .++. + |+......+..++..+.+|||||+..|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~----------------~~~~-----~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS----------------EDTI-----P--TVGFNMRKVTKGNVTLKVWDLGGQPRFR 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC----------------cCcc-----C--CCCcceEEEEECCEEEEEEECCCCHhHH
Confidence 789999999999999999532110 0010 1 1112222344566889999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCcch-hHHHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004316 155 VEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 155 ~~~~~al~~aD~ailVvDa~~g~~~-qt~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
..+..+++.+|++++|+|+...... +....+..+. ..++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 59 SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999999999999999864322 2223333332 25789999999999864
No 185
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.62 E-value=9.7e-15 Score=142.37 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=78.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcH
Q 004316 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~ 154 (761)
|+++|..|+|||||+++|+...- . .++. .|+......+.+++..+.+|||||+.+|.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~---------------~~~~-------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~ 58 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-L---------------ESVV-------PTTGFNSVAIPTQDAIMELLEIGGSQNLR 58 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-c---------------cccc-------ccCCcceEEEeeCCeEEEEEECCCCcchh
Confidence 78999999999999999963211 0 0000 01111223456778999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHH--HcCCCEEEEEeCCCCCCC
Q 004316 155 VEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR--RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 155 ~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~--~~~~p~iiviNK~D~~~~ 207 (761)
..+..+++.+|++|+|+|+++....... ..+..+. ..++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 9999999999999999999875432222 2223232 257999999999998654
No 186
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=6.2e-15 Score=147.52 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=75.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++++........ +.+ ..+.+.......+......++||||||+.+|
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~---------------~~~---t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN---------------FIA---TVGIDFRNKVVTVDGVKVKLQIWDTAGQERF 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC---------------cCC---cccceeEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 6899999999999999999642111000 000 0111221212222223468999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|++.....+....| ..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 88888889999999999999875443332222 22222 368999999999984
No 187
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=8.4e-15 Score=142.97 Aligned_cols=112 Identities=20% Similarity=0.129 Sum_probs=77.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|+.|+|||||+++|+... .. .. .... ....++. ..+...+..+++|||||+.++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~------~~-----~~~~-----~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~ 60 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FP------EN-----VPRV-----LPEITIP---ADVTPERVPTTIVDTSSRPQD 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CC------cc-----CCCc-----ccceEee---eeecCCeEEEEEEeCCCchhh
Confidence 68999999999999999997421 10 00 0000 0011111 122235578999999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~~ 206 (761)
...+...++.+|++++|+|++.+...+.. ..| ..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 88888888999999999999887655553 233 22332 3789999999999854
No 188
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.62 E-value=8.7e-15 Score=146.75 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=80.9
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
...+.+++|+++|++|+|||||+++|+.... +.. +. ...|.|..... ..+ +..+.|||
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~---~~---------------~~~~~t~~~~~--~~~-~~~l~l~D 76 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR---TS---------------KTPGRTQLINF--FEV-NDKLRLVD 76 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---cc---------------CCCCceeEEEE--Eec-CCeEEEeC
Confidence 3456789999999999999999999974210 100 01 11344443322 222 46899999
Q ss_pred CCCCC----------CcHHHHHHHHHh---cCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 147 TPGHV----------DFTVEVERALRV---LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~----------~f~~~~~~al~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
|||+. +|.......++. ++++++|+|+..+.......+++.+...++|+++++||+|+.
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 99963 233334444554 467889999988877777677777788899999999999985
No 189
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.62 E-value=3.6e-15 Score=167.85 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=86.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+|+|+.....+ ..+ ..|+|.+.....+.+++..++||||||+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v~~------~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI--------------VTD------IAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------cCC------CCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 589999999999999999997432111 111 156777777777888899999999999987
Q ss_pred cHHH--------HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 153 FTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~--------~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+... ....++.+|++|+|+|++++...+....|.. ..++|+++|+||+|+.
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 6432 3346788999999999998877666666665 5678999999999985
No 190
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=8e-15 Score=140.53 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=78.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++++|||||+++|+........ ....+.+..............+++|||||+..|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY-------------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF 62 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc-------------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHH
Confidence 6999999999999999999643211100 001122333323233334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHHc---CCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY---EVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~---~~p~iiviNK~D~~ 205 (761)
......+++.+|++|+|+|+.+.........|. ..... +.|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999999998754333333333 33333 48999999999984
No 191
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.62 E-value=7.3e-15 Score=142.65 Aligned_cols=112 Identities=21% Similarity=0.161 Sum_probs=75.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++++.. .... . +.+.. + ........+......+.||||||+.+|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~------~--------~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG--TFIE------K--------YDPTI---E-DFYRKEIEVDSSPSVLEILDTAGTEQF 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC------C--------CCCch---h-heEEEEEEECCEEEEEEEEECCCcccc
Confidence 6999999999999999999642 1110 0 00000 0 011111222222356889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
...+...++.+|++|+|+|.++....+....| ..... .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 98888899999999999999876443333333 22222 479999999999974
No 192
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=7.7e-15 Score=143.05 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=77.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++++... . ... +.+. -+ ........+.++...+.+|||||+.+|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f------~~~--------~~~t---~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--F------RES--------YIPT---IE-DTYRQVISCSKNICTLQITDTTGSHQF 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C------CCC--------cCCc---ch-heEEEEEEECCEEEEEEEEECCCCCcc
Confidence 59999999999999999996421 1 000 0000 00 011112233445578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHH------cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~------~~~p~iiviNK~D~~ 205 (761)
......+++.+|++|+|+|.+......... .+..... .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 63 PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 988888999999999999998765544333 3333332 468999999999984
No 193
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.62 E-value=2.7e-15 Score=143.29 Aligned_cols=112 Identities=25% Similarity=0.276 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (761)
.+|+++|++|+|||||+++|+... .. .+...+++.......+..++ +.+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI--------------------TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc--------------------CcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 589999999999999999996432 11 11123555555555566666 78999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+|........+.++.++.++|.... ...+...+++.+.. +.|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 99987777777777777777666543 22333334444433 889999999999854
No 194
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=7.9e-15 Score=143.53 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=78.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|.+|+|||||+++++... . ... . ....|.........+..+...+.||||||+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~------~~~--------~---~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--F------DTQ--------L---FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--C------CcC--------c---CCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 35689999999999999999996321 0 000 0 000122211222222233467889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH-H-------HcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R-------RYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~-~-------~~~~p~iiviNK~D~~ 205 (761)
.+|.......++.+|++|+|+|.++....+....|... . ..++|+++++||+|+.
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 65 ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999889999999999999999876544444433321 1 1358999999999974
No 195
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.62 E-value=2.6e-15 Score=142.44 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=66.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC--
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV-- 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-- 151 (761)
+|+++|++|+|||||+++|+...- . ...| ..+.+.. .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~------------------~-------~~~t-----~~~~~~~---~~iDt~G~~~~ 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI------------------L-------YKKT-----QAVEYND---GAIDTPGEYVE 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc------------------c-------cccc-----eeEEEcC---eeecCchhhhh
Confidence 799999999999999999952110 0 0001 1223333 689999983
Q ss_pred --CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 152 --DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 --~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+...+..+++.+|++|+|+|++++...+....+.. .+.|+++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 333444456889999999999998877665433322 345999999999985
No 196
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=140.98 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=98.7
Q ss_pred hhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEE
Q 004316 66 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINII 145 (761)
Q Consensus 66 ~~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 145 (761)
+.+.+...-||++|++|+|||||+|+|+...+.. + +.. .+|.|..... |++.+ .+.|+
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-r---tSk---------------tPGrTq~iNf--f~~~~-~~~lV 75 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-R---TSK---------------TPGRTQLINF--FEVDD-ELRLV 75 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCccee-e---cCC---------------CCCccceeEE--EEecC-cEEEE
Confidence 3455677889999999999999999997543321 1 111 2677766654 34443 38999
Q ss_pred eCCCCC----------CcHHHHHHHHH---hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC-hHH
Q 004316 146 DTPGHV----------DFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD-PWK 211 (761)
Q Consensus 146 DTPG~~----------~f~~~~~~al~---~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~ 211 (761)
|.||+. .....+..+++ ...++++++|+.++....+++.++.+...++|+++++||+|....+ ..+
T Consensus 76 DlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k 155 (200)
T COG0218 76 DLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNK 155 (200)
T ss_pred eCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHH
Confidence 999982 22333444443 4678999999999999999999999999999999999999997643 345
Q ss_pred HHHHHHHHhCC
Q 004316 212 VLDQARSKLRH 222 (761)
Q Consensus 212 ~~~~i~~~l~~ 222 (761)
.+..+++.++.
T Consensus 156 ~l~~v~~~l~~ 166 (200)
T COG0218 156 QLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHhcC
Confidence 56666666544
No 197
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.61 E-value=1.2e-14 Score=146.19 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=72.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+|+|.+|+|||||+++++... .. .. + ...++.......+.+++ +.++||||||+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~------~~--------~-----~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FP------EE--------Y-----IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CC------cc--------c-----CCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 69999999999999999996421 10 00 0 01111111111233444 678899999987
Q ss_pred CcH----HH----HHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHH------HcCCCEEEEEeCCCCC
Q 004316 152 DFT----VE----VERALRVLDGAILVLCSVGGVQSQSITVDR-QMR------RYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~----~~----~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~------~~~~p~iiviNK~D~~ 205 (761)
+|. .+ ...+++.+|++|+|+|++...+.+....|. ... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 652 11 345678999999999999865554443332 222 2468999999999984
No 198
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=1e-14 Score=157.35 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (761)
+-+-.|+|+|.+|+|||||+++|......+ . ++ ..+|.......+.+.+ ..+.|+|||
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~v------a---------~y------~fTT~~p~ig~v~~~~~~~~~i~D~P 213 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKI------A---------DY------PFTTLVPNLGVVRVDDGRSFVIADIP 213 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccc------c---------CC------CCCccCCEEEEEEeCCceEEEEEeCC
Confidence 456789999999999999999995421111 1 11 2345555555566666 899999999
Q ss_pred CCCC-------cHHHHHHHHHhcCeEEEEEeCCCC---cchhHHHHH-HHHHH-----cCCCEEEEEeCCCCCC
Q 004316 149 GHVD-------FTVEVERALRVLDGAILVLCSVGG---VQSQSITVD-RQMRR-----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~-------f~~~~~~al~~aD~ailVvDa~~g---~~~qt~~~~-~~~~~-----~~~p~iiviNK~D~~~ 206 (761)
|+.+ +.....+.+..+|++|+|+|++.. ...+....| +++.. .++|+++|+||+|+..
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 9853 334556667789999999999864 222233323 22322 3689999999999853
No 199
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.61 E-value=7.7e-15 Score=141.96 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~~ 152 (761)
+|+++|.+|+|||||+++|....-. ...+ ..|.++. .+.+ .++.+.+|||||+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-----------------~~~~---t~~~~~~----~~~~~~~~~l~i~D~~G~~~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-----------------TTIP---TVGFNVE----MLQLEKHLSLTVWDVGGQEK 56 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-----------------cccC---ccCcceE----EEEeCCceEEEEEECCCCHh
Confidence 3889999999999999999632110 0000 0122221 1222 357899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHH----HHcCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM----RRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~----~~~~~p~iiviNK~D~~~ 206 (761)
|...+...++.+|++|+|+|+.+...... ...+... ...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 98888888999999999999987642221 1122222 125799999999999853
No 200
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=8.2e-15 Score=143.79 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+-.+|+++|++|+|||||+++|.... .. .. ....|+++ ..+.+.+..+.+|||||+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~--~~---------------~~---~~t~g~~~----~~i~~~~~~~~~~D~~G~ 68 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASED--IS---------------HI---TPTQGFNI----KTVQSDGFKLNVWDIGGQ 68 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCC--Cc---------------cc---CCCCCcce----EEEEECCEEEEEEECCCC
Confidence 35679999999999999999995321 00 00 00123222 234566889999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHH----HHHHHcCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVD----RQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~----~~~~~~~~p~iiviNK~D~~~~ 207 (761)
.+|...+...++.+|++++|+|+.+..... ....+ ......++|+++++||+|+...
T Consensus 69 ~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 999888888899999999999998632211 12222 2223457999999999998643
No 201
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=1.2e-14 Score=144.23 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|..++|||||++++.. +.. ..+. ...|.. ...+...+..+.+|||||+.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~--~~~---------------~~~~---~T~~~~----~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL--GEV---------------VTTI---PTIGFN----VETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCc---------------cccC---Cccccc----eEEEEECCEEEEEEECCCCHh
Confidence 5799999999999999999942 111 0110 011222 223456788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
|...+..+++.+|++|+|+|+++..... ....+..... .+.|+++|+||.|+...
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9988899999999999999997632111 1222222221 36899999999998643
No 202
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.61 E-value=1.8e-14 Score=143.60 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+.+.+|+++|..++|||||+.++.... . ... + ....|.........+......++||||||
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~--~------~~~--------~---~~t~~~~~~~~~i~~~~~~~~l~iwDt~G 64 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGS--T------ESP--------Y---GYNMGIDYKTTTILLDGRRVKLQLWDTSG 64 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--C------CCC--------C---CCcceeEEEEEEEEECCEEEEEEEEeCCC
Confidence 356789999999999999999996311 0 000 0 00112222222222333347899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
+.+|...+...++.+|++|+|+|.+.....+...-|.. +.. .++|+|+|.||+|+.
T Consensus 65 ~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 65 QGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 99999888888999999999999998765555544432 222 378999999999984
No 203
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=1.3e-14 Score=140.26 Aligned_cols=111 Identities=21% Similarity=0.128 Sum_probs=76.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcc--eeeeceEEEeecCeEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGI--TIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~gi--Ti~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+|+++|.+|+|||||+++|+........ .+.+ +.......+......+++|||||+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH---------------------ESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc---------------------CCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 7999999999999999999743211000 0111 1111112222233579999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH----HHcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~----~~~~~p~iiviNK~D~~ 205 (761)
.|.......++.+|++++|+|+.++...+....|... ...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9988888888999999999999887654444444222 22368999999999985
No 204
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.61 E-value=1.7e-14 Score=142.66 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee--cCeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--KDYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 150 (761)
++|+++|++|+|||||+++++...- . .. .. + .+.......+.+ .++.+.+|||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~-------~~-----~~---~------t~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V-------ES-----YY---P------TIENTFSKIIRYKGQDYHLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c-------cc-----cC---c------chhhhEEEEEEECCEEEEEEEEECCCh
Confidence 6899999999999999999974211 0 00 00 0 000000111222 2467899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHH----HcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~~p~iiviNK~D~~ 205 (761)
.+|......++..+|++++|+|+++....+....| .... ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 99998888999999999999999987655544333 3332 2467999999999974
No 205
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=9.4e-15 Score=148.63 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
-.+|+|+|++|+|||||+++|+... ... .. ...|.+.......+....+.+.||||||+.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~---~~---------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED---LA---------------PTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC---cC---------------CCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 3579999999999999999997431 100 00 011222222222222234688999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHH-----HcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR-----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~-----~~~~p~iiviNK~D~~ 205 (761)
+|......+++.+|++|+|+|+++....+... .|.... ..++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 74 RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999998765544443 343322 1357899999999985
No 206
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.61 E-value=1.4e-14 Score=141.76 Aligned_cols=111 Identities=21% Similarity=0.171 Sum_probs=79.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||+++|... ... . ...|+......+.+++..++++||||+.+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~-------~---------------~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~ 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPK-------K---------------VAPTVGFTPTKLRLDKYEVCIFDLGGGANF 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCc-------c---------------ccCcccceEEEEEECCEEEEEEECCCcHHH
Confidence 4899999999999999999531 000 0 011222223345667899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHHHHH----cCCCEEEEEeCCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRR----YEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~~~----~~~p~iiviNK~D~~~~~ 208 (761)
...+..+++.+|++|+|+|+++.-..+ ....+..+.. .++|+++|+||+|+..+.
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999999999999999998753322 2223333322 478999999999997654
No 207
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=7.6e-15 Score=159.71 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=78.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (761)
...+|+++|++|+|||||+|+|+... .+ +.+. .+.|.+.....+.+ ++..+.||||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~-----v~~~---------------~~tT~d~~~~~i~~~~~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VY-----AADQ---------------LFATLDPTTRRLDLPDGGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-ee-----eccC---------------CccccCCEEEEEEeCCCceEEEEecCc
Confidence 45789999999999999999996432 11 1111 34455555555666 467999999999
Q ss_pred CC-CcH-------HHHHHHHHhcCeEEEEEeCCCCcchhHHH----HHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HV-DFT-------VEVERALRVLDGAILVLCSVGGVQSQSIT----VDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~-~f~-------~~~~~al~~aD~ailVvDa~~g~~~qt~~----~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+. ++. ..+...++.||++|+|+|+++........ ++..+...++|+++|+||+|+.
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 83 211 12334578899999999998775444332 2333333478999999999984
No 208
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=7.9e-15 Score=149.67 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+++|+.++|||||+++|+...-.. ++. ...|++.......+......++||||||
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~----------------~~~---~t~g~~~~~~~v~~~~~~~~l~l~Dt~G 70 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL----------------ESK---STIGVEFATRTLQVEGKTVKAQIWDTAG 70 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCC---CceeEEEEEEEEEECCEEEEEEEEECCC
Confidence 456799999999999999999996321100 000 0112222222222222346899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|.......++.+|++|+|+|.++....+....|. .+.. .++|+++|.||+|+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred cHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 9999998899999999999999998765544444442 2332 478999999999974
No 209
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.60 E-value=9.4e-15 Score=147.20 Aligned_cols=114 Identities=21% Similarity=0.180 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
...+|+++|..|+|||||+++|+... . .+. + ...+.++.....+.+.+ ..+.|||||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~------~~~--------~-----~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--F------SGS--------Y-----ITTIGVDFKIRTVEINGERVKLQIWDTA 63 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--C------CCC--------c-----CccccceeEEEEEEECCEEEEEEEEeCC
Confidence 46789999999999999999996321 0 000 0 01111122222333333 578999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
|+..|...+...++.+|++|+|+|+++....+....|.. ... ...|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999888999999999999999987654444333322 222 357899999999985
No 210
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=1.2e-14 Score=162.55 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=89.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+-.+|+++|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.++++.+++|||||+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------vs~------~pgtTrd~~~~~i~~~g~~v~l~DTaG~ 261 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI--------------VSD------IKGTTRDVVEGDFELNGILIKLLDTAGI 261 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc--------------cCC------CCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence 34589999999999999999997543222 111 1577888777788899999999999999
Q ss_pred CCcHHH--------HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~--------~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.++... ...+++.+|++|+|+|++.+...+.. .+..+...++|+++|+||+|+..
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 765432 24577899999999999987665554 55556667899999999999853
No 211
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=1.3e-14 Score=142.55 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=73.6
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-CeEEEEEeCCCCCC---
Q 004316 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVD--- 152 (761)
Q Consensus 77 iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~~--- 152 (761)
|+|++|+|||||+++|+...-.+ . ...+.|+......+.++ +..++||||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~------~---------------~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV------A---------------NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc------c---------------CCCceeecCcceEEEcCCCCeEEEEeccccchhhh
Confidence 58999999999999996431100 0 01344555555556677 88999999999843
Q ss_pred ----cHHHHHHHHHhcCeEEEEEeCCCCc------chhHHH-HHHHHH----------HcCCCEEEEEeCCCCCC
Q 004316 153 ----FTVEVERALRVLDGAILVLCSVGGV------QSQSIT-VDRQMR----------RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 ----f~~~~~~al~~aD~ailVvDa~~g~------~~qt~~-~~~~~~----------~~~~p~iiviNK~D~~~ 206 (761)
+.......++.+|++++|+|+.... ...... .+..+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2334556788899999999998762 222222 222221 14789999999999853
No 212
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.60 E-value=1.2e-14 Score=141.22 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=76.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-ecCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~~ 152 (761)
+|+++|.+++|||||+++|+........ ++. ...|..+......+. .....+.+|||||+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--------------NYL---MTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------cCC---CceEEEEEEEEEEeCCCCEEEEEEEECCCHHH
Confidence 6999999999999999999642111100 000 001222222222222 2347899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
|...+...++.+|++|+|+|.++.........|.. ... .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 98888899999999999999987544333333322 222 368999999999984
No 213
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.60 E-value=1.2e-14 Score=141.58 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=74.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC-
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD- 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~- 152 (761)
+|+++|.+|+|||||+++++... .. .++.+... +.......++.+...+.+|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~--------------~~~~~t~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~ 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI--------------GEYDPNLE----SLYSRQVTIDGEQVSLEILDTAGQQQA 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc--------------cccCCChH----HhceEEEEECCEEEEEEEEECCCCccc
Confidence 48999999999999999997411 00 00000000 11112222333446789999999985
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHH-----HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR-----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~-----~~~~p~iiviNK~D~~ 205 (761)
+.......++.+|++|+|+|+++....+....|. .+. ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 61 DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 4566788899999999999999875554443332 222 2379999999999973
No 214
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=2.6e-14 Score=139.79 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++++...-. . .+.+. .+.. ......+......+.+|||||+.+|
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~-~---------------~~~~t---~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI-E---------------SYDPT---IEDS-YRKQVEIDGRQCDLEILDTAGTEQF 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-c---------------ccCCc---chhe-EEEEEEECCEEEEEEEEeCCCcccc
Confidence 5999999999999999999632210 0 00000 0000 0111112223367899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-----HHHcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-----MRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-----~~~~~~p~iiviNK~D~~ 205 (761)
...+...++.+|++|+|+|..+....+....|.. ....++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 63 TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 9999999999999999999987644443333322 223479999999999974
No 215
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.59 E-value=6.1e-15 Score=127.46 Aligned_cols=81 Identities=31% Similarity=0.541 Sum_probs=74.7
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC---eEEecCcEEEEecCceeecceecCCCEEEEecc-cccc
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCAS 447 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~ 447 (761)
|.|+|||+.+|++ |+++|+|||+|+|++||.|++...+ +.+++.+|+.++|.+..+++++.||||+++.|+ ++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 5789999999998 9999999999999999999987763 357899999999999999999999999999999 8999
Q ss_pred Cceeec
Q 004316 448 GDTFTD 453 (761)
Q Consensus 448 GdtL~~ 453 (761)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 216
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.59 E-value=2.6e-14 Score=136.63 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=82.0
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-CeEEEEEeCCCCCCcH-
Q 004316 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVDFT- 154 (761)
Q Consensus 77 iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~~f~- 154 (761)
|+|++|+|||||+++|+...... .....+.|.........+. +..+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999996432110 0011344444444444444 6799999999997764
Q ss_pred ------HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 155 ------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 155 ------~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
..+...++.+|++++|+|+..+........+......++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 3445678999999999999998777777667777788999999999999864
No 217
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.59 E-value=8.7e-15 Score=143.89 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=76.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..|+|||||+.+++... ... . +.+. .+.... ....+......++||||||..+|
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~--f~~------~--------~~~t---~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 63 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHS--FPD------Y--------HDPT---IEDAYK-QQARIDNEPALLDILDTAGQAEF 63 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC------C--------cCCc---ccceEE-EEEEECCEEEEEEEEeCCCchhh
Confidence 69999999999999999996421 100 0 0000 010010 11112222367899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHH----HcCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~----~~~~p~iiviNK~D~~ 205 (761)
...+..+++.+|++|+|+|+++....+...-|. ... ..++|+++|.||+|+.
T Consensus 64 ~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 64 TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999999999876666554332 222 2478999999999974
No 218
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=1.9e-14 Score=143.84 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|+... ... ++.+. -+... .....+......+.||||||+.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~--------------~~~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE--------------TYDPT---IEDSY-RKQVVVDGQPCMLEVLDTAGQEEY 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc--------------cCCCc---hHhhE-EEEEEECCEEEEEEEEECCCchhh
Confidence 48999999999999999997421 100 00000 00000 111112222356899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH------cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~------~~~p~iiviNK~D~~ 205 (761)
......+++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 99889999999999999999876544443333 22222 468999999999984
No 219
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=2.6e-14 Score=159.82 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+-+..|+|+|.+|+|||||+++|...... +.++ .++|+......+.+++..|.|+||||
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpk---------------Iady------pfTTl~P~lGvv~~~~~~f~laDtPG 215 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPK---------------IADY------PFTTLVPNLGVVQAGDTRFTVADVPG 215 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCcc---------------cccc------CcccccceEEEEEECCeEEEEEECCC
Confidence 45678999999999999999999532111 1121 46677777777888889999999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCc----chhHHHH-HHHH--------------HHcCCCEEEEEeCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVGGV----QSQSITV-DRQM--------------RRYEVPRLAFINKLD 203 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~g~----~~qt~~~-~~~~--------------~~~~~p~iiviNK~D 203 (761)
..+ +.....+.+..||++|+|||++... ....... ...+ ...++|+|+|+||+|
T Consensus 216 liegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiD 295 (500)
T PRK12296 216 LIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKID 295 (500)
T ss_pred CccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECcc
Confidence 753 2234566778899999999997421 1111111 1122 224689999999999
Q ss_pred CC
Q 004316 204 RM 205 (761)
Q Consensus 204 ~~ 205 (761)
++
T Consensus 296 L~ 297 (500)
T PRK12296 296 VP 297 (500)
T ss_pred ch
Confidence 85
No 220
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.59 E-value=1.7e-14 Score=147.22 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee---cCeEEEEEeCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTPGH 150 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG~ 150 (761)
+|+++|.+|+|||||+++|+... . ... + ...++.+.....+.+ ....++||||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~------~~~--------~-----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--F------GKS--------Y-----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--C------CCC--------C-----CCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 68999999999999999996321 0 000 0 111222222222333 2478999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH------cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~------~~~p~iiviNK~D~~ 205 (761)
..|.......++.+|++|+|+|+++....+....|. .+.. .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 999888888999999999999998764444433332 2222 235789999999984
No 221
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=1.8e-14 Score=147.34 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|..|+|||||+++++... . ... .....|+++.........+...+.||||||+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f------~~~-----------~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~ 72 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--F------EKK-----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--C------CCc-----------cCCccceeEEEEEEEECCeEEEEEEEECCCc
Confidence 34689999999999999999986321 1 000 0011233333322222334578999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH-H--HcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R--RYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~-~--~~~~p~iiviNK~D~~ 205 (761)
.+|.......++.+|++|+|+|.+.....+...-|... . ..++|+++|.||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 99988888889999999999999987665555444322 1 2478999999999974
No 222
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.59 E-value=3.5e-14 Score=144.70 Aligned_cols=109 Identities=21% Similarity=0.144 Sum_probs=78.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+++|||||+++++... +.+. ..|+........+..+.+.||||||+..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~-----------------f~~~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~ 57 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR-----------------FKDT-------VSTVGGAFYLKQWGPYNISIWDTAGREQF 57 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-----------------CCCC-------CCccceEEEEEEeeEEEEEEEeCCCcccc
Confidence 68999999999999999996321 0000 01222222233456678999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHHH---cCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~~---~~~p~iiviNK~D~~~ 206 (761)
.......++.+|++|+|+|+++......... |..+.. .++|+|+|.||+|+..
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9888889999999999999997654444432 222322 3688999999999853
No 223
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.59 E-value=3.2e-14 Score=137.15 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=75.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 151 (761)
+|+|+|++|+|||||+++|+... ... . +.+ .+.......+... .+.+.+||+||+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~-------~--------~~~------~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVE-------E--------YDP------TIEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCc-------C--------cCC------ChhHeEEEEEEECCEEEEEEEEECCChH
Confidence 58999999999999999997432 100 0 000 0111111222333 4689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHHHH----cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~~~----~~~p~iiviNK~D~~ 205 (761)
++.......++.+|++++|+|.++...... ...+..... .++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 999989999999999999999987533222 223333322 378999999999985
No 224
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.58 E-value=7.4e-15 Score=126.74 Aligned_cols=80 Identities=35% Similarity=0.519 Sum_probs=72.2
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe-c---c-ccc
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCA 446 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~ 446 (761)
|.|+|||+.++++ |+++|+|||+|+|++||.|++...++++++.+|+.+ +.+..+++++.||||+++. | + ++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 5799999999998 999999999999999999999988888999999955 7778999999999999985 4 5 588
Q ss_pred cCceeec
Q 004316 447 SGDTFTD 453 (761)
Q Consensus 447 ~GdtL~~ 453 (761)
+||||++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 225
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=3.6e-14 Score=156.84 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-CeEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG 149 (761)
-+..|+++|.+|||||||+++|......+ .++ .++|.......+.+. +..+.|+||||
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kI---------------a~y------pfTTl~PnlG~v~~~~~~~~~laD~PG 215 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKI---------------ANY------HFTTLVPNLGVVETDDGRSFVMADIPG 215 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCcc---------------ccC------CcceeceEEEEEEEeCCceEEEEECCC
Confidence 45689999999999999999996432111 111 345666666666666 78999999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCC---cchhH-HHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVGG---VQSQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~g---~~~qt-~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (761)
... +.....+.+..+|++|+|||++.. ...+. ..+...+.. .++|.++|+||+|+.
T Consensus 216 liega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 853 233455667779999999999743 11222 233333433 378999999999974
No 226
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.58 E-value=6.4e-15 Score=151.03 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=117.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhc-ceeeeceEEEeecCeEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG-ITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~g-iTi~~~~~~~~~~~~~i~liDTP 148 (761)
...+.|+++|++|+|||||++.|+...... ... ...| +++ ...++.+++++|||
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-------------~~~------~~~g~i~i------~~~~~~~i~~vDtP 91 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-------------NIS------DIKGPITV------VTGKKRRLTFIECP 91 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC-------------ccc------cccccEEE------EecCCceEEEEeCC
Confidence 345789999999999999999997532110 000 0123 111 22357889999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEE-EEeCCCCCCCC--hHHHHHHHHHHhCCcee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLA-FINKLDRMGAD--PWKVLDQARSKLRHHCA 225 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ii-viNK~D~~~~~--~~~~~~~i~~~l~~~~~ 225 (761)
|+. ..+..+++.+|++++|+|+..+...++..++..+...++|.++ |+||+|+.... ..+..+++++.+.....
T Consensus 92 g~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~ 168 (225)
T cd01882 92 NDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY 168 (225)
T ss_pred chH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC
Confidence 964 5677788999999999999999999999999999999999654 99999996432 34555666664432111
Q ss_pred ------------eeeecCCCcCccccceecccceeEEeeCCCC
Q 004316 226 ------------AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNG 256 (761)
Q Consensus 226 ------------~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g 256 (761)
+.++|..++..|.+++|+++.+.+.|....+
T Consensus 169 ~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~ 211 (225)
T cd01882 169 QGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHP 211 (225)
T ss_pred CCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCC
Confidence 4567888888999999999999999976544
No 227
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=2e-14 Score=143.40 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=77.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..|+|||||+++|+... . .. .+ ....|.+.......+..+...+.+|||||+.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~------~~--------~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~ 62 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--F------SE--------ST---KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF 62 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C------CC--------CC---CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 69999999999999999996321 0 00 00 001122222223333333467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
...+...++.+|++|+|+|+++.........|.. ... .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 63 RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 9889999999999999999987644443333322 222 357899999999984
No 228
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.58 E-value=4.8e-14 Score=138.33 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=74.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||+++++... . ... +.+ ..|.........+......++||||||+.+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f------~~~--------~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--F------DKN--------YKA---TIGVDFEMERFEILGVPFSLQLWDTAGQERF 62 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C------CCC--------CCC---ceeeEEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 58999999999999999997421 1 000 000 0111222111122222367999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHHc----CCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY----EVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~----~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|+.+.........|.. ..+. ..|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 63 KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 9888999999999999999987544443333433 3332 24589999999984
No 229
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=3.9e-14 Score=147.14 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=74.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..|+|||||+++++... . ... +.+. -+ ........+....+.++||||+|+.+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f------~~~--------y~pT---i~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~ 61 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--F------EEQ--------YTPT---IE-DFHRKLYSIRGEVYQLDILDTSGNHPF 61 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--C------CCC--------CCCC---hh-HhEEEEEEECCEEEEEEEEECCCChhh
Confidence 69999999999999999996311 1 000 0000 00 011111222223478899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHHH------------cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR------------YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~~------------~~~p~iiviNK~D~~ 205 (761)
......++..+|++|+|+|.++....+.... +.++.. .++|+|+|+||+|+.
T Consensus 62 ~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 8877778899999999999987644443322 222221 368999999999984
No 230
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=4.1e-14 Score=141.69 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=75.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|+...-.... +. ...|.+.......+......+++|||||+.+|
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~---------------~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 63 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP---------------YQ---NTIGAAFVAKRMVVGERVVTLGIWDTAGSERY 63 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC---------------cc---cceeeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 6999999999999999999742110000 00 00122222222222222356789999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH--cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~--~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 64 EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 87777788899999999999876444333333 22332 268999999999984
No 231
>PRK11058 GTPase HflX; Provisional
Probab=99.56 E-value=3.4e-14 Score=158.06 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCe-EEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG 149 (761)
.++.|+++|.+|+|||||+|+|+..... +.+ ..+.|++.....+.+.+. .+.||||||
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~------v~~---------------~~~tTld~~~~~i~l~~~~~~~l~DTaG 254 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY------AAD---------------QLFATLDPTLRRIDVADVGETVLADTVG 254 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee------ecc---------------CCCCCcCCceEEEEeCCCCeEEEEecCc
Confidence 3568999999999999999999532111 111 135566666556666654 899999999
Q ss_pred CCCc--------HHHHHHHHHhcCeEEEEEeCCCCcchhHH----HHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HVDF--------TVEVERALRVLDGAILVLCSVGGVQSQSI----TVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f--------~~~~~~al~~aD~ailVvDa~~g~~~qt~----~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.+. ...+...++.||++|+|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 255 ~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 255 FIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 8542 11234456889999999999987544433 23344444579999999999985
No 232
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.56 E-value=7.1e-14 Score=137.83 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (761)
.+|+++|..|+|||||+.++++.. .. ..+.+. .|... ...+..++ +.++||||||+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~--------------~~~~pt---~~~~~---~~~~~~~~~~~~l~i~Dt~G~ 59 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FP--------------SEYVPT---VFDNY---AVTVMIGGEPYTLGLFDTAGQ 59 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC--------------CCCCCc---eeeee---EEEEEECCEEEEEEEEECCCc
Confidence 469999999999999999996421 10 000000 01111 01222333 78899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (761)
.+|......+++.+|++|+|+|.++....+... .|.. ... .++|+++|.||+|+..
T Consensus 60 ~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 60 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999887888899999999999998865554442 3432 222 3689999999999853
No 233
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=5.9e-14 Score=137.84 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=75.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++++|||||+++++...-. .. +.+ ...........+....+.+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--------~~--------~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--------EE--------YVP----TVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------CC--------CCC----ceeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 6999999999999999999642110 00 000 000011111222333467889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHH--HcCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMR--RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~--~~~~p~iiviNK~D~~~ 206 (761)
.......++.+|++|+|+|..+....+... .| ..+. ..++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 887778889999999999998764443332 22 2222 35799999999999854
No 234
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=8e-14 Score=141.64 Aligned_cols=116 Identities=18% Similarity=0.083 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+|+|++|+|||||+++|+...-.. . +. ...|.+.......+......+++|||||+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~--------~--------~~---~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~ 65 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------V--------HD---LTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCC--------C--------CC---CCccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 45789999999999999999996421100 0 00 00122222222223223357889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
.+|.......++.+|++|+|+|++.....+....|.. ... .++|++++.||+|+.
T Consensus 66 ~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 9999888889999999999999987654444433332 222 368999999999985
No 235
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=4.3e-14 Score=142.11 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=77.9
Q ss_pred EeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHHHH
Q 004316 78 SAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEV 157 (761)
Q Consensus 78 iG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 157 (761)
+|..++|||||+.+++.. ... .. +. ..-|++.......++.+...++||||||+.+|...+
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~------~~--------~~---~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFE------KK--------YV---ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCC------CC--------CC---CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 699999999999999631 110 00 00 002333333332333345789999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 158 ERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 158 ~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
..+++.+|++|+|+|++...+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999999998876666655544 333 478999999999974
No 236
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.55 E-value=6.4e-14 Score=139.96 Aligned_cols=115 Identities=14% Similarity=0.002 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++|+++|..|+|||||+++++... .. .. +.+ ..+... .....++.....++||||||+.+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~------~~--------~~~---t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FP------QV--------YEP---TVFENY-VHDIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CC------Cc--------cCC---cceeee-EEEEEECCEEEEEEEEECCCChh
Confidence 579999999999999999996321 10 00 000 000010 11112222346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHH--cCCCEEEEEeCCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 207 (761)
|.......++.+|++|+|+|.++....+... .| ..+.. .+.|+++|.||+|+...
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 8777777889999999999998765555442 23 23332 37899999999998643
No 237
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.6e-14 Score=133.25 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=86.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe--ecCeEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDT 147 (761)
+.+.+|.++|..|+|||.|+-|+.. |...++....|-++....+++ -+..++++|||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~---------------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDT 65 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD---------------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDT 65 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc---------------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeec
Confidence 4678999999999999999998831 112222223333344444444 44578999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
+|+++|...+..++|.|+|+|+|.|.+..-+......|-. +.+ .++|.++|.||+|+.
T Consensus 66 AGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 66 AGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred cccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 9999999999999999999999999998766666666543 222 378999999999985
No 238
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.6e-14 Score=136.27 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=81.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
-+|+++|..++|||||+-|+.. +. +.++ .|..-|...-+....+.-...++.||||+|+++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk------------~~-----F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER 66 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK------------DQ-----FHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER 66 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh------------Cc-----cccc--cccccccEEEEEEEEeCCcEEEEEEEEcCCccc
Confidence 4799999999999999999842 11 1110 122233333333333333447889999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC----EEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP----RLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p----~iiviNK~D~~~ 206 (761)
|.+...-++|.|++||+|.|.++..+.+....|-.-...+.| +.+|.||+|+..
T Consensus 67 y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 67 YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 999999999999999999999987777776666544333333 345779999853
No 239
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=7.2e-14 Score=136.95 Aligned_cols=118 Identities=14% Similarity=-0.013 Sum_probs=76.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.++.+|+++|..|+|||||+++++... .. . . .+.+ ..|.........+......+.+|||+|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~-~----~--------~~~~---T~~~~~~~~~~~~~~~~~~l~~~d~~g 63 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FS-L----N--------AYSP---TIKPRYAVNTVEVYGQEKYLILREVGE 63 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CC-c----c--------cCCC---ccCcceEEEEEEECCeEEEEEEEecCC
Confidence 367899999999999999999996321 10 0 0 0000 011111111122222236788999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHH-HcCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR-RYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~~~~p~iiviNK~D~~ 205 (761)
...|......+++.+|++|+|+|+++....+.. ..+.... ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 64 DEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred cccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 999987778888999999999999875333222 2222221 2378999999999984
No 240
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=6.3e-14 Score=136.96 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=74.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|+...-.... . .+ ...............+.+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~------~---~~-----------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~ 61 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEY------V---PT-----------VFDNYSATVTVDGKQVNLGLWDTAGQEEY 61 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------C---Cc-----------eeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 6899999999999999999753210000 0 00 00011111122233567999999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~~~ 207 (761)
.......++.+|++++|+|+++....+.. ..| ..... .++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 62 DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 76666677899999999999875433322 222 22222 35999999999998643
No 241
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=7.5e-14 Score=138.96 Aligned_cols=112 Identities=12% Similarity=-0.069 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-ecCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~~ 152 (761)
+|+++|..|+|||||+++|+...-. .. +.+. .+... ....... .....+.||||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--------~~--------~~~t---~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--------EE--------YVPT---VFENY-VTNIQGPNGKIIELALWDTAGQEE 61 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--------CC--------CCCe---eeeee-EEEEEecCCcEEEEEEEECCCchh
Confidence 6999999999999999999742110 00 0000 00000 0011111 1235789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHH---HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~---~~~~p~iiviNK~D~~ 205 (761)
|.......++.+|++|+|+|+++....+... .|.... ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 62 YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 9888888889999999999998765444432 243222 2478999999999984
No 242
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.54 E-value=1.9e-13 Score=132.83 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=75.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+++|.+++|||||+.+++.. ... .. ....+........+..++ ..+.+|||||..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~------~~-------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFH------SS-------------HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCC------CC-------------CCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 6899999999999999999631 110 00 001111111122233333 678999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++++|+|..+.-..+....|.. ... .++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999888889999999999999987544333333322 112 368999999999984
No 243
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=1e-13 Score=137.51 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=74.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||+.+++... . .. ++.+ ..|.........+......+.+|||+|+.+|
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f------~~--------~~~~---T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 62 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--F------DE--------DYIQ---TLGVNFMEKTISIRGTEITFSIWDLGGQREF 62 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C------CC--------CCCC---ccceEEEEEEEEECCEEEEEEEEeCCCchhH
Confidence 68999999999999999996421 0 00 0000 0122222222222223368999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
...+..+++.+|++++|+|+++....+....| ..+.. ...| |+|.||+|+.
T Consensus 63 ~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 63 INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 98888899999999999999876554443333 22322 2345 7889999984
No 244
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.53 E-value=1.3e-13 Score=138.04 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|..++|||||+.+++... .. .. +.+ .-|... .....++.+...++||||||+.+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~------~~--------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FP------KE--------YIP---TVFDNY-SAQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CC------cC--------CCC---ceEeee-EEEEEECCEEEEEEEEECCCchh
Confidence 479999999999999999996421 10 00 000 001111 01112222347799999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (761)
|.......++.+|++|+|+|.++....+... .|.. ... .++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9988888899999999999998865555543 3433 222 4789999999999853
No 245
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.53 E-value=1.6e-13 Score=135.16 Aligned_cols=113 Identities=17% Similarity=0.078 Sum_probs=75.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..|+|||||+.+++... . .. .+.+. .+- .......++.+...+.||||||+.+|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~--f------~~--------~~~~t---~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA--F------PG--------EYIPT---VFD-NYSANVMVDGKPVNLGLWDTAGQEDY 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C------CC--------cCCCc---cee-eeEEEEEECCEEEEEEEEECCCchhh
Confidence 69999999999999999996421 1 00 00000 000 00111122233467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (761)
......+++.+|++|+|+|.++..+.+... .|.. ... .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 63 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888888899999999999998765554442 3432 222 3689999999999853
No 246
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.53 E-value=9.2e-14 Score=136.99 Aligned_cols=115 Identities=27% Similarity=0.247 Sum_probs=84.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++-.+|.++|..|+|||||+++|.. +.... ..-|+......+.++++.++++|.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~----------------------~~pT~g~~~~~i~~~~~~~~~~d~gG 67 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE----------------------TIPTIGFNIEEIKYKGYSLTIWDLGG 67 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE----------------------EEEESSEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc----------------------cCcccccccceeeeCcEEEEEEeccc
Confidence 4566899999999999999999952 21111 01133334455677899999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHH----HcCCCEEEEEeCCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMR----RYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~----~~~~p~iiviNK~D~~~~~ 208 (761)
+..|...+...+..+|++|+|||+.+.- ..+....+..+. ..++|++|++||.|+.++.
T Consensus 68 ~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 68 QESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp SGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred cccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 9999888989999999999999998642 223333333332 2478999999999997654
No 247
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.1e-13 Score=155.91 Aligned_cols=108 Identities=20% Similarity=0.345 Sum_probs=86.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.||++|+||+|||||+|+|. |.-.+.| +| .|+|+.-....+.++++++.++|.||..++
T Consensus 5 ~valvGNPNvGKTtlFN~LT---G~~q~Vg------------Nw------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL 63 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALT---GANQKVG------------NW------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 (653)
T ss_pred eEEEecCCCccHHHHHHHHh---ccCceec------------CC------CCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence 49999999999999999994 4332221 22 799999999999999999999999998655
Q ss_pred HH-----H-HHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 154 TV-----E-VERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 154 ~~-----~-~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
.. . +.+++ ...|++|-|+||++ -......--|+.+.++|+++++|++|.
T Consensus 64 ~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 64 TAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred CCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhh
Confidence 21 1 23344 35799999999987 456666777888999999999999996
No 248
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.52 E-value=6.9e-14 Score=162.04 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=78.7
Q ss_pred eCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHHH--
Q 004316 79 AHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE-- 156 (761)
Q Consensus 79 G~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~-- 156 (761)
|.+|+|||||+|+|.... .+ +. ..+|+|++.....+.+++..+++|||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~---v~---------------n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~ 59 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QT---VG---------------NWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL 59 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---Ce---ec---------------CCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch
Confidence 889999999999995321 11 11 12688998888888899999999999999887542
Q ss_pred ---HH-HHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 157 ---VE-RAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 157 ---~~-~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+. ..+ +.+|++++|+|+++. .+......++.+.++|+++|+||+|+.
T Consensus 60 ~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 60 EEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 22 222 368999999999873 334555566777899999999999974
No 249
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=1.3e-13 Score=135.42 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++|+|+|+.++|||||+++++...-. .. +.+. .+... .....+..+...+.||||||+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--------~~--------~~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--------EV--------YVPT---VFENY-VADIEVDGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--------CC--------CCCc---cccce-EEEEEECCEEEEEEEEeCCCchh
Confidence 57999999999999999999642110 00 0000 01011 11112222345789999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHH-HHHH--cCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~-~~~~--~~~p~iiviNK~D~~~ 206 (761)
|......+++.+|++++|+|.......... ..|. .... .++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 877766788999999999998864332222 2232 2222 3789999999999853
No 250
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=1.8e-13 Score=134.88 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=77.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|..++|||+|+.+++.. ... . ++.+. -|.+.. ....++.....++||||+|+.+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~--~f~------~--------~~~~T---i~~~~~-~~~~~~~~~v~l~i~Dt~G~~~ 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN--KFP------T--------DYIPT---VFDNFS-ANVSVDGNTVNLGLWDTAGQED 61 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCC------C--------CCCCc---ceeeeE-EEEEECCEEEEEEEEECCCCcc
Confidence 46999999999999999999632 110 0 00000 011111 1112222347899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHH-HHHH--cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~-~~~~--~~~p~iiviNK~D~~ 205 (761)
|.......++.+|++|+|+|.++....+.. ..|. .+.. .++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 62 YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 998888899999999999999876655553 3332 2322 378999999999984
No 251
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.52 E-value=4.3e-14 Score=123.87 Aligned_cols=80 Identities=31% Similarity=0.416 Sum_probs=72.5
Q ss_pred cEEEEEeeeecc-C-ccEEEEEEEcceecCCCEEEecC---------CCeEEecCcEEEEecCceeecceecCCCEEEEe
Q 004316 373 LVALAFKLEEGR-F-GQLTYLRIYEGVIRKGDFIINVN---------TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (761)
Q Consensus 373 ~~~~V~k~~~~~-~-G~l~~~RV~sG~l~~g~~v~~~~---------~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 441 (761)
++++|||+.+++ + |+++|+|||||+|+.||.|++.. ..+.+++.+||.++|.+..++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 6 99999999999999999999876 344688999999999999999999999999999
Q ss_pred cc-ccccCceee
Q 004316 442 GV-DCASGDTFT 452 (761)
Q Consensus 442 gl-~~~~GdtL~ 452 (761)
|+ ++++|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 99 788898753
No 252
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=2.4e-13 Score=138.20 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee---cCeEEEEEeCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTPG 149 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG 149 (761)
.+|+++|..|+|||||+++|+...- .. . + ...++.+.....+.+ ....+++|||||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~--~~------~--------~-----~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G 61 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF--AE------V--------S-----DPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC------C--------C-----CceeceEEEEEEEEECCCCEEEEEEEeCCc
Confidence 5799999999999999999974211 00 0 0 011111211122222 236799999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH----cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~iiviNK~D~~ 205 (761)
+..|.......++.+|++|+|+|.++.........|.. +.. ...|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 62 QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred chhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99998888889999999999999987544333333322 222 245678899999984
No 253
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.50 E-value=2.5e-13 Score=133.41 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=72.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcH
Q 004316 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~ 154 (761)
|+|+|..|+|||||+++++... .. .. +.+. .+ ........+......+.+|||||+.+|.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~------~~--------~~~~---~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 60 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FP------ED--------YVPT---VF-ENYSADVEVDGKPVELGLWDTAGQEDYD 60 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CC------CC--------CCCc---EE-eeeeEEEEECCEEEEEEEEECCCCcccc
Confidence 5799999999999999997421 10 00 0000 00 0111111222233578999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHH-HHHH--cCCCEEEEEeCCCCC
Q 004316 155 VEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 155 ~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~--~~~p~iiviNK~D~~ 205 (761)
......++.+|++|+|+|.++....+... .|. .... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 61 RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred hhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 87788889999999999998754333322 232 2222 379999999999985
No 254
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.50 E-value=2.5e-13 Score=139.11 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=70.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++++.. .... . .+. ...+.........+......+++|||||+.++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~--~~~~-----~--------~~~---~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~ 63 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG--EYDD-----H--------AYD---ASGDDDTYERTVSVDGEESTLVVIDHWEQEMW 63 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC--CcCc-----c--------CcC---CCccccceEEEEEECCEEEEEEEEeCCCcchH
Confidence 6999999999999999999521 1100 0 000 00011111222233335578999999999843
Q ss_pred HHHHHHHHH-hcCeEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALR-VLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~-~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~iiviNK~D~~ 205 (761)
. ....++ .+|++|+|+|+++........ .+..+.. .++|+|+|.||+|+.
T Consensus 64 ~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 64 T--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred H--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 2 234556 899999999998864443322 2233333 468999999999984
No 255
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.49 E-value=3.5e-13 Score=132.44 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=74.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+++++|.+|+|||||+.+++... ... .+.+ .+.........++.....+.+|||||+.+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~---------------~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPT---------------EYVP----TAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCC---------------CCCC----ceeeeeeEEEEECCEEEEEEEEECCCChhh
Confidence 58999999999999999986421 100 0000 011111112222223367889999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHH--HHHHHHHH--cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSI--TVDRQMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~--~~~~~~~~--~~~p~iiviNK~D~~ 205 (761)
......+++.+|++|+|+|+++....+.. ..+..... .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 62 DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 88777788999999999999876544432 22333333 368999999999984
No 256
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.48 E-value=6.5e-13 Score=131.73 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|..++|||||+.+++... . .. ++.+. -+... .....++.+...+.||||+|..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f------~~--------~~~pT---~~~~~-~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--F------PE--------NYVPT---VFENY-TASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--C------CC--------ccCCc---eeeee-EEEEEECCEEEEEEEEECCCch
Confidence 4579999999999999999996421 0 00 00000 01011 1111222234689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
+|......+++.+|++|+|+|.++....+.. ..|.. +.. .+.|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 9988888889999999999999887555553 44432 222 268999999999984
No 257
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=8.4e-13 Score=128.45 Aligned_cols=120 Identities=19% Similarity=0.097 Sum_probs=91.1
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
+.+.+-+|.++|.+++|||.++.++...+-... +. ..-||..+...+.++-....+.+|||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------------~~------sTiGIDFk~kti~l~g~~i~lQiWDt 68 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------------FI------STIGIDFKIKTIELDGKKIKLQIWDT 68 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCC-------------cc------ceEEEEEEEEEEEeCCeEEEEEEEEc
Confidence 456788999999999999999999954321110 00 01356666666666556688999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~iiviNK~D~~~ 206 (761)
.|+.+|......+++.|+++++|+|.+...+.....-|..... .++|.++|.||+|+..
T Consensus 69 aGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 69 AGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred ccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999999999999999999999998766665555543332 3788999999999853
No 258
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.5e-13 Score=126.62 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=85.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
.-+|+++|..++|||||+.+++|..- +.. +- ..-|+..-+....+....+.+.||||+|++
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f--------d~~-----Yq------ATIGiDFlskt~~l~d~~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF--------DNT-----YQ------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 82 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh--------ccc-----cc------ceeeeEEEEEEEEEcCcEEEEEEEecccHH
Confidence 35799999999999999999987532 111 00 014566666666666566899999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcch-hHHHHHHHHHHcC----CCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRRYE----VPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~-qt~~~~~~~~~~~----~p~iiviNK~D~~~ 206 (761)
+|...+..++|.+++||+|.|.++--.. +|..-+.-+...+ +-+++|.||-||..
T Consensus 83 RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 83 RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 9999999999999999999998865443 4444444555443 33577779999964
No 259
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=2e-13 Score=127.22 Aligned_cols=97 Identities=23% Similarity=0.173 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC--
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (761)
++|.+||++++|||||+++|........ -|.. +.+. =++|||||-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~-------------------------KTq~-----i~~~---~~~IDTPGEyi 48 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK-------------------------KTQA-----IEYY---DNTIDTPGEYI 48 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC-------------------------ccce-----eEec---ccEEECChhhe
Confidence 5799999999999999999943211100 0111 1122 246999994
Q ss_pred --CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 --~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
..|...+......||.+++|.||++....- --..+..++.|+|-||||+|+.
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~---pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVF---PPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccC---CchhhcccCCCEEEEEECccCc
Confidence 567788888888999999999999753222 2234456789999999999997
No 260
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.48 E-value=2.1e-13 Score=119.67 Aligned_cols=77 Identities=25% Similarity=0.286 Sum_probs=67.0
Q ss_pred cEEEEEeeeeccC--ccEEEEEEEcceecCCCEEEecCCC---------eEEecCcEEEEecCceeecceecCCCEEEEe
Q 004316 373 LVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVNTG---------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (761)
Q Consensus 373 ~~~~V~k~~~~~~--G~l~~~RV~sG~l~~g~~v~~~~~~---------~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 441 (761)
++++|||+.++|+ |+++|+|||||+|++||.|++.+.+ ..++|.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 5789999999996 5699999999999999999874322 4579999999999999999999999999999
Q ss_pred cc-ccccCc
Q 004316 442 GV-DCASGD 449 (761)
Q Consensus 442 gl-~~~~Gd 449 (761)
|+ +..++.
T Consensus 81 gl~~~~~~~ 89 (94)
T cd04090 81 GIDSSIVKT 89 (94)
T ss_pred Ccchheece
Confidence 99 555444
No 261
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=1.3e-12 Score=126.71 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=74.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc-
Q 004316 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF- 153 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f- 153 (761)
|+++|+.|+|||||++.|+.... ... .. ...+.|..... +.+.+ .+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~---~~---------------~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~ 59 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LAR---TS---------------KTPGKTQLINF--FNVND-KFRLVDLPGYGYAK 59 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eee---ec---------------CCCCcceeEEE--EEccC-eEEEecCCCccccc
Confidence 78999999999999999963211 111 00 01233332222 23333 8999999998553
Q ss_pred ---------HHHHHHHHH---hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 154 ---------TVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ---------~~~~~~al~---~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
...+...+. .++++++|+|...........+++.+...+.|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 60 VSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 222333333 4678999999988777777778888888899999999999984
No 262
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.47 E-value=3.9e-13 Score=126.83 Aligned_cols=111 Identities=23% Similarity=0.144 Sum_probs=77.0
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHHH
Q 004316 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (761)
Q Consensus 77 iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~ 156 (761)
++|++|+|||||+++|+........ .. . ...............+..+.+|||||+.++...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-----~~----------~----t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 61 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-----YE----------T----TIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL 61 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-----cc----------c----chhheeeEEEEECCEEEEEEEEecCChHHHHhH
Confidence 5899999999999999753321000 00 0 001111111111123678999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCcchhHHHHH-----HHHHHcCCCEEEEEeCCCCCC
Q 004316 157 VERALRVLDGAILVLCSVGGVQSQSITVD-----RQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 157 ~~~al~~aD~ailVvDa~~g~~~qt~~~~-----~~~~~~~~p~iiviNK~D~~~ 206 (761)
....++.+|++++|+|+..+........| ......++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 88899999999999999987666655544 334556899999999999854
No 263
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.47 E-value=6.4e-13 Score=121.62 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=80.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.|+|+|.+|+|||||+|+|+.... .. +... .+.|.......+.+.+..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~---~~~~---------------~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AK---VSNI---------------PGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SE---ESSS---------------TTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--cc---cccc---------------ccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 489999999999999999974211 11 1111 455666655566778899999999998542
Q ss_pred ---------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004316 154 ---------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINK 201 (761)
Q Consensus 154 ---------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK 201 (761)
.....+.+..+|++++|+|+.+....+...+++++. .+.|+++|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 61 ESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 234556668899999999988855566677778786 89999999998
No 264
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=8.2e-13 Score=130.58 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=75.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||+.+++... . .. ++.+. .+... .....++.+...+.||||||+..|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f------~~--------~~~~t---~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~ 62 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--Y------PE--------TYVPT---VFENY-TASFEIDEQRIELSLWDTSGSPYY 62 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--C------CC--------CcCCc---eEEEE-EEEEEECCEEEEEEEEECCCchhh
Confidence 69999999999999999996421 0 00 00000 00010 111122223467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|.++....+.. ..|.. +.. .+.|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 63 DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 88788889999999999999876655542 34432 222 378999999999984
No 265
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=1e-12 Score=134.73 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|..++|||+|+.+++... . ... +.+. -|.... ....+......+.||||+|..+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~--F------~~~--------y~pT---i~~~~~-~~i~~~~~~v~l~iwDTaG~e~ 73 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC--Y------PET--------YVPT---VFENYT-AGLETEEQRVELSLWDTSGSPY 73 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC--C------CCC--------cCCc---eeeeeE-EEEEECCEEEEEEEEeCCCchh
Confidence 479999999999999999996321 1 000 0000 011110 1112222347899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHH-HHH--cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQ-MRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~-~~~--~~~p~iiviNK~D~~ 205 (761)
|......+++.+|++|+|+|.+.....+. ...|.. +.. .+.|+|+|.||+|+.
T Consensus 74 ~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 74 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 98888889999999999999988665554 234433 322 368899999999984
No 266
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.44 E-value=8.8e-13 Score=133.20 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=78.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe--ecCeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDTPG~ 150 (761)
++|+++|++|+|||||+++|..... .. +.+ .++.......+. ..+..+.|||||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--------~~-----t~~---------s~~~~~~~~~~~~~~~~~~~~l~D~pG~ 58 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--------RS-----TVT---------SIEPNVATFILNSEGKGKKFRLVDVPGH 58 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--------CC-----ccC---------cEeecceEEEeecCCCCceEEEEECCCC
Confidence 4799999999999999999964211 00 000 000111111111 34678999999999
Q ss_pred CCcHHHHHHHHHhc-CeEEEEEeCCCCcc--hhHHHHHHH----HH--HcCCCEEEEEeCCCCCCCChH
Q 004316 151 VDFTVEVERALRVL-DGAILVLCSVGGVQ--SQSITVDRQ----MR--RYEVPRLAFINKLDRMGADPW 210 (761)
Q Consensus 151 ~~f~~~~~~al~~a-D~ailVvDa~~g~~--~qt~~~~~~----~~--~~~~p~iiviNK~D~~~~~~~ 210 (761)
.+|...+...++.+ +++|+|+|+..... ..+...+.. .. ..++|+++++||+|+..+.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 59 PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH
Confidence 99999999999998 99999999987521 112222221 11 148999999999999876543
No 267
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.44 E-value=2e-12 Score=133.23 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=87.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|.+|+|||||+++|.... ... . + ..+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v---~---------~------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEV---A---------A------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccc---c---------C------CCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999995321 110 0 0 1344555556667788999999999998543
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCC-----CE-----------EEEEeCCCCCCCChH
Q 004316 154 -------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-----PR-----------LAFINKLDRMGADPW 210 (761)
Q Consensus 154 -------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~-----p~-----------iiviNK~D~~~~~~~ 210 (761)
...+..+++.+|++++|+|+++.. .+-..+.+.+...++ |. |-+.++.|+.+.+.
T Consensus 61 ~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~- 138 (233)
T cd01896 61 AADGKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDE- 138 (233)
T ss_pred cccchhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCH-
Confidence 345667889999999999998643 244455566655543 11 23445777776664
Q ss_pred HHHHHHHHHhCCceeee
Q 004316 211 KVLDQARSKLRHHCAAV 227 (761)
Q Consensus 211 ~~~~~i~~~l~~~~~~~ 227 (761)
+.+..+.+.++...+.+
T Consensus 139 ~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 139 KTIKAILREYKIHNADV 155 (233)
T ss_pred HHHHHHHHHhCeeeEEE
Confidence 45556667777665543
No 268
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.42 E-value=3e-12 Score=130.64 Aligned_cols=114 Identities=15% Similarity=0.044 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|..++|||||+.+++... . .. ++.+. .+.... ....++.....+.||||+|+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f------~~--------~y~pT---i~~~~~-~~~~~~~~~v~L~iwDt~G~e~ 61 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--Y------PG--------SYVPT---VFENYT-ASFEIDKRRIELNMWDTSGSSY 61 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--C------CC--------ccCCc---cccceE-EEEEECCEEEEEEEEeCCCcHH
Confidence 479999999999999999996321 0 00 00000 011111 1112222346789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH---cCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~iiviNK~D~~~ 206 (761)
|......+++.+|++|+|+|.++....+.. ..|..... .++|+|+|.||+|+..
T Consensus 62 ~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 998888899999999999999986554443 34443222 4689999999999853
No 269
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=3.6e-12 Score=130.05 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|+.|+|||||+++++. |.... . +. ...|..+.........+...+++|||||+.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~--~~~~~------~-----~~------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLT--GEFEK------K-----YI------PTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHh--CCCCC------C-----CC------CccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 35799999999999999988763 21110 0 00 001222322222223345789999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH---HcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~---~~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++|+|+|.++....++...|..-. ..++|++++.||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 70 KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 99888888888999999999999876666555443221 2478999999999974
No 270
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.41 E-value=2.9e-12 Score=124.12 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=68.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 151 (761)
+|+++|..|+|||||+.+++.. .... ...+. .+. . ...+..++ ..+.+|||+|..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~--~f~~--------------~~~~~---~~~-~---~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG--SYVQ--------------LESPE---GGR-F---KKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCC--------------CCCCC---ccc-e---EEEEEECCEEEEEEEEECCCCC
Confidence 6999999999999999998642 1100 00000 010 0 11223334 678999999997
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDR 204 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~iiviNK~D~ 204 (761)
+. ..++.+|++++|+|.++....+... .+..+.. .++|+++|.||.|+
T Consensus 59 ~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 59 DA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred ch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 62 3567899999999999876666633 3333333 35799999999997
No 271
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.39 E-value=9.3e-12 Score=115.40 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=83.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|-|+|..|+||||++++|+.... +. +. -|.......+.++++.+++||..|+..+
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~--~~---i~-------------------pt~gf~Iktl~~~~~~L~iwDvGGq~~l 73 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDT--DT---IS-------------------PTLGFQIKTLEYKGYTLNIWDVGGQKTL 73 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCc--cc---cC-------------------CccceeeEEEEecceEEEEEEcCCcchh
Confidence 588999999999999999964321 00 01 1333444557789999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcc-hhHHHHHHHH----HHcCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQM----RRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~-~qt~~~~~~~----~~~~~p~iiviNK~D~~~~ 207 (761)
.+-+..++..+|+.|+|||+.+... .++...+..+ +..+.|++++.||.|+.++
T Consensus 74 r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 74 RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 9999999999999999999976533 2233333332 3357899999999999754
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.39 E-value=5.4e-12 Score=126.51 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=48.9
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHH-HHH--cCCCEEEEEeCCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~~p~iiviNK~D~~~ 206 (761)
....+.||||+|+.+. ....+++.+|++|+|+|.++....+... .|.. +.. .++|+++|.||+|+..
T Consensus 64 ~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 3478999999999753 2344678999999999998765555442 3432 322 3689999999999853
No 273
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.38 E-value=8e-12 Score=125.55 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=84.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+||+++|.+|+|||||+|+|+........ ....+.|.........+.+..+++|||||..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-------------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d 61 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-------------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFD 61 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-------------------cCCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence 58999999999999999999854332111 01246677777777888999999999999876
Q ss_pred cH-------HHHHHHH----HhcCeEEEEEeCCCCcchhHHHHHHHHHHc-C----CCEEEEEeCCCCCC
Q 004316 153 FT-------VEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRRY-E----VPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~-------~~~~~al----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~----~p~iiviNK~D~~~ 206 (761)
+. .++.+.+ ...|++|+|+|+.. .......+++.+.+. + .++++++|++|...
T Consensus 62 ~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 62 TSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred ccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 52 2233332 35799999999987 777777777776553 3 57899999999754
No 274
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.38 E-value=1.8e-12 Score=119.20 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=87.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|.+||..|+|||+|+-++...+ +++ ..+ ..-|+..+.....+.-+..++.||||+|++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~--------fd~---------~~~--~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE 71 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT--------FDD---------LHP--TTIGVDFKVKVMQVDGKRLKLAIWDTAGQE 71 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc--------cCc---------cCC--ceeeeeEEEEEEEEcCceEEEEEEeccchH
Confidence 4579999999999999998885321 111 110 013666677777777778999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (761)
+|...+..++|.|.++|+|.|.+.........+|..-.. .++-.++|.||+|..
T Consensus 72 rFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 72 RFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred hhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 999999999999999999999987766666666654322 345568899999974
No 275
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.37 E-value=7.3e-12 Score=124.86 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (761)
.+|+|+|+.|+|||||+++++.. .... . + ...+ ...-...+.+. ...+++|||||+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~--~~~~------~--------~-----~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~ 59 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG--EFPE------E--------Y-----HPTV-FENYVTDCRVDGKPVQLALWDTAGQ 59 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCc------c--------c-----CCcc-cceEEEEEEECCEEEEEEEEECCCC
Confidence 47999999999999999999631 1100 0 0 0000 00001112222 356889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHH-HHHH--cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~--~~~p~iiviNK~D~~ 205 (761)
.+|.......++.+|++++|+|.+.....+... .|. .+.. .++|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 60 EEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred hhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 887655555678999999999997654433332 232 2222 368999999999984
No 276
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.37 E-value=8e-12 Score=121.04 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=78.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..++|||||+++|.... .. . ++.+ ..|.........++.....+.||||+|+.+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~------~--------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 61 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FP------E--------NYIP---TIGIDSYSKEVSIDGKPVNLEIWDTSGQERF 61 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TT------S--------SSET---TSSEEEEEEEEEETTEEEEEEEEEETTSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--cc------c--------cccc---ccccccccccccccccccccccccccccccc
Confidence 58999999999999999996421 10 0 0000 1223333333333334567999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH-HH---cCCCEEEEEeCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-RR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~~p~iiviNK~D~~ 205 (761)
.......++.+|++|+|+|.++.........|... .. .+.|++++.||.|+.
T Consensus 62 ~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 62 DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 88888889999999999999876554444444332 21 247889999999974
No 277
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.36 E-value=3.6e-12 Score=120.35 Aligned_cols=118 Identities=19% Similarity=0.117 Sum_probs=85.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
..+.+|.|+|.+|+|||+|.+++.+..=. .. + -..-|.........++.+-..+.||||+|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~--------~q--------y---kaTIgadFltKev~Vd~~~vtlQiWDTAG 67 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--------QQ--------Y---KATIGADFLTKEVQVDDRSVTLQIWDTAG 67 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHH--------HH--------h---ccccchhheeeEEEEcCeEEEEEEEeccc
Confidence 35678999999999999999999753210 00 0 00012222333333443446889999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH--------cCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR--------YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~iiviNK~D~~~ 206 (761)
+++|.+.-...+|.+|.+++|.|....-...+...|+.-.. ...|+||+.||+|..+
T Consensus 68 QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 68 QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 99999988888999999999999998777777777764322 2568999999999854
No 278
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.2e-12 Score=120.14 Aligned_cols=115 Identities=21% Similarity=0.122 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..++.++|..++|||.|+-++....=. . ..| -.-|+..-.....++-+..++++|||.||+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~--------~------~hd-----~TiGvefg~r~~~id~k~IKlqiwDtaGqe 66 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQ--------P------VHD-----LTIGVEFGARMVTIDGKQIKLQIWDTAGQE 66 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcc--------c------ccc-----ceeeeeeceeEEEEcCceEEEEEEecCCcH
Confidence 457899999999999999988532110 0 000 013444444445555666899999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~ 205 (761)
.|.+.+..+++.+-+||||.|.+..........|-. ++. .++-++++.||+|+.
T Consensus 67 ~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 67 SFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred HHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 999999999999999999999987655555554432 333 456678888999985
No 279
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.9e-12 Score=135.80 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+.-.+|+|+|+||+|||||+|+|......| |.+. .|+|.++....++.+|+.+.|+||+|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI-----VSpv---------------~GTTRDaiea~v~~~G~~v~L~DTAG 325 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI-----VSPV---------------PGTTRDAIEAQVTVNGVPVRLSDTAG 325 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceE-----eCCC---------------CCcchhhheeEeecCCeEEEEEeccc
Confidence 445799999999999999999998766555 2222 78999999999999999999999999
Q ss_pred CCCc---------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 150 HVDF---------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 150 ~~~f---------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
..+= ......++..+|++++|+|+.++...+...+.+.+...+.-+.+.+|||
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 8651 2234667889999999999999888888888877777655444444444
No 280
>PRK09866 hypothetical protein; Provisional
Probab=99.34 E-value=2.1e-11 Score=136.74 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCCC-----cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC--CCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVD-----FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE--VPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~-----f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--~p~iiviNK~D~~ 205 (761)
.++.|+||||... +...+..++..+|++++|+|+..+.......+.+.+.+.+ .|+++|+||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 6899999999743 4456778999999999999999988888888888888877 4999999999984
No 281
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.5e-11 Score=111.46 Aligned_cols=117 Identities=17% Similarity=0.032 Sum_probs=85.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
-.-++.|+|...+|||+++-+.+..+-.+ ..+ +.-|+..+.....-.-+..++.+|||.|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~------------afv-------sTvGidFKvKTvyr~~kRiklQiwDTagq 80 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTS------------AFV-------STVGIDFKVKTVYRSDKRIKLQIWDTAGQ 80 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhcccccc------------cee-------eeeeeeEEEeEeeecccEEEEEEEecccc
Confidence 34479999999999999998885322111 000 11356555554443445578999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH----HcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
+.|...+...+|.+++.||+.|.++........-|--.. ..+.|+|+|.||+|+..
T Consensus 81 EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 81 ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 999999999999999999999999866555555443332 24889999999999854
No 282
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=124.86 Aligned_cols=115 Identities=19% Similarity=0.331 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeE-EEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQ-INIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~-i~liDTP 148 (761)
+.|-+|++||-||||||||+++|......+. +| .=+|+........++++. +.+-|.|
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa---------------~Y------aFTTL~P~iG~v~yddf~q~tVADiP 252 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVA---------------HY------AFTTLRPHIGTVNYDDFSQITVADIP 252 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCccc---------------cc------ceeeeccccceeeccccceeEeccCc
Confidence 4567899999999999999999954332221 11 123566666666666654 9999999
Q ss_pred CCCC-------cHHHHHHHHHhcCeEEEEEeCCCC---c-chhHHHHHHHHHHc-----CCCEEEEEeCCCCC
Q 004316 149 GHVD-------FTVEVERALRVLDGAILVLCSVGG---V-QSQSITVDRQMRRY-----EVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~-------f~~~~~~al~~aD~ailVvDa~~g---~-~~qt~~~~~~~~~~-----~~p~iiviNK~D~~ 205 (761)
|.+. .-....+-+..|+..++|||...+ - ..|-..+|..+..+ ..|.+||+||+|++
T Consensus 253 GiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 253 GIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred cccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 9853 223345556678999999999876 1 22223344444333 56899999999985
No 283
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=3e-11 Score=122.17 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=82.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+..-||-++|..|+|||||+|+|.... ......+..+ +|- .......+.+..++||||||
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~--~~~v~~vg~~------t~~------------~~~~~~~~~~~~l~lwDtPG 96 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGE--VKEVSKVGVG------TDI------------TTRLRLSYDGENLVLWDTPG 96 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcc--CceeeecccC------CCc------------hhhHHhhccccceEEecCCC
Confidence 456789999999999999999997321 1111111111 000 00011123457899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~iiviNK~D~~ 205 (761)
..| +.......+...|.+++++|+.+.....++..|+..... +.|++++||..|+.
T Consensus 97 ~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 97 LGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred cccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 976 566677888999999999999988777788888876554 46899999999984
No 284
>COG2262 HflX GTPases [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=131.25 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=78.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-CeEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTP 148 (761)
..++.|+++|..|||||||+|+|....-. +.+. .-.|.+...-.+.+. +..+.|-||-
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~------~~d~---------------LFATLdpttR~~~l~~g~~vlLtDTV 248 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY------VADQ---------------LFATLDPTTRRIELGDGRKVLLTDTV 248 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee------cccc---------------ccccccCceeEEEeCCCceEEEecCc
Confidence 56889999999999999999999521111 1111 123555555556665 6899999999
Q ss_pred CCCCc--------HHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHH---HcCCCEEEEEeCCCCC
Q 004316 149 GHVDF--------TVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f--------~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~---~~~~p~iiviNK~D~~ 205 (761)
|+++= ...+......||..+.|||++++. ..+-..+.+.+. ...+|+|+|.||+|+.
T Consensus 249 GFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 249 GFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred cCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 98642 122344456799999999998863 233333333333 3578999999999975
No 285
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1e-11 Score=120.27 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=89.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.+.+.+|+++|.+++|||-|+.++....-.+ +. -..-|+.+......++-+-.+..||||+
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~----------------~S---ksTIGvef~t~t~~vd~k~vkaqIWDTA 71 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSL----------------ES---KSTIGVEFATRTVNVDGKTVKAQIWDTA 71 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCc----------------cc---ccceeEEEEeeceeecCcEEEEeeeccc
Confidence 4567889999999999999999994321111 00 0114566666666666666889999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHHc---CCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY---EVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~---~~p~iiviNK~D~~ 205 (761)
|+++|......+++.|-+|++|.|.+.....+....| ++++.+ ++++++|.||+||.
T Consensus 72 GQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 72 GQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred chhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 9999999999999999999999999887666655444 444443 68889999999984
No 286
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.30 E-value=1.4e-11 Score=123.80 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 151 (761)
.+|+++|.+|+|||||+|+|+...... .+ ...... ..+|.... .+.. ....+.+|||||..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-------~~---~~~~~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~ 63 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-------EG---AAPTGV------VETTMKRT--PYPHPKFPNVTLWDLPGIG 63 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-------CC---ccccCc------cccccCce--eeecCCCCCceEEeCCCCC
Confidence 369999999999999999997421100 00 000000 00111111 1111 12478999999986
Q ss_pred CcHHHHHH-----HHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVER-----ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~-----al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+....... .+..+|++++|.| ..........++.+...+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 64 STAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred cccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 54222222 2456788888754 3456667777888888899999999999984
No 287
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=111.37 Aligned_cols=111 Identities=23% Similarity=0.222 Sum_probs=79.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.+.++|--++|||||+|.... ++ +... .+-|+......+.-++..+.+||.||+..|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~------------g~-----~~ed------miptvGfnmrk~tkgnvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIAR------------GQ-----YLED------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 78 (186)
T ss_pred eEEEEeeccCCcceEEEEEee------------cc-----chhh------hcccccceeEEeccCceEEEEEecCCCccH
Confidence 488999999999999986621 11 0000 122333334444556788999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcc-hhHHH----HHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQ-SQSIT----VDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~-~qt~~----~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
...+.++.|.+|+++.+|||.+... ...+. ++....-.++|+++..||.|+++|
T Consensus 79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 9999999999999999999987421 12222 222233458999999999999876
No 288
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=2.1e-11 Score=118.89 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=68.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee---cCeEEEEEeCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTP 148 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTP 148 (761)
-+.|.|+|+.|+|||+|+.+|.+... . .+++ ++ .....+.. .+..+.+||+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~-~------------~T~t-----------S~-e~n~~~~~~~~~~~~~~lvD~P 57 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT-V------------PTVT-----------SM-ENNIAYNVNNSKGKKLRLVDIP 57 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS----------------B--------------S-SEEEECCGSSTCGTCECEEEET
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc-C------------Ceec-----------cc-cCCceEEeecCCCCEEEEEECC
Confidence 46799999999999999999975311 0 0000 11 00111111 34679999999
Q ss_pred CCCCcHHHHHHH---HHhcCeEEEEEeCCCCcchhHHHHHH----H---HH--HcCCCEEEEEeCCCCCCCChHHH
Q 004316 149 GHVDFTVEVERA---LRVLDGAILVLCSVGGVQSQSITVDR----Q---MR--RYEVPRLAFINKLDRMGADPWKV 212 (761)
Q Consensus 149 G~~~f~~~~~~a---l~~aD~ailVvDa~~g~~~qt~~~~~----~---~~--~~~~p~iiviNK~D~~~~~~~~~ 212 (761)
||.++....... +..+-++|+|||+.. ...+-..+.+ . .. ..++|++|+.||.|+..+.+...
T Consensus 58 GH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~ 132 (181)
T PF09439_consen 58 GHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKK 132 (181)
T ss_dssp T-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHH
T ss_pred CcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHH
Confidence 999988877665 889999999999974 2222222211 1 11 25788999999999988765433
No 289
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.26 E-value=6.9e-11 Score=118.90 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=79.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-----ecCeEEEEEeCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-----WKDYQINIIDTP 148 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~liDTP 148 (761)
+|+++|..++|||||+++++... . ... ....-|.++......+. -..+.++||||+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~--f---------------~~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDta 62 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ--V---------------LGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVG 62 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--C---------------CCC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecC
Confidence 58999999999999999996321 0 000 00011222322222221 123689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH----------------------cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----------------------YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----------------------~~~p~iiviNK~D~~ 205 (761)
|+.+|.......++.+|++|+|+|.+.....+....|.. +.. .++|+|+|.||+|+.
T Consensus 63 G~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 63 GSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred CchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999888889999999999999998766666555532 221 268999999999985
Q ss_pred C
Q 004316 206 G 206 (761)
Q Consensus 206 ~ 206 (761)
.
T Consensus 143 ~ 143 (202)
T cd04102 143 P 143 (202)
T ss_pred h
Confidence 4
No 290
>PRK13768 GTPase; Provisional
Probab=99.26 E-value=6.7e-11 Score=123.38 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=49.4
Q ss_pred CeEEEEEeCCCCCCcH---HHH---HHHHHh--cCeEEEEEeCCCCcchhHHHHHHHHH-----HcCCCEEEEEeCCCCC
Q 004316 139 DYQINIIDTPGHVDFT---VEV---ERALRV--LDGAILVLCSVGGVQSQSITVDRQMR-----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~---~~~---~~al~~--aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~~p~iiviNK~D~~ 205 (761)
+..+.+|||||+.++. ... .+.+.. ++++++|+|+..+....+......+. ..++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3579999999987643 222 233333 89999999998877666654433322 5799999999999986
Q ss_pred CC
Q 004316 206 GA 207 (761)
Q Consensus 206 ~~ 207 (761)
..
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 54
No 291
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.2e-11 Score=115.08 Aligned_cols=112 Identities=22% Similarity=0.236 Sum_probs=84.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|.++|--+|||||++..|- .+.+ - ++ --|+......+++++..+++||..|+..
T Consensus 18 ~~IlmlGLD~AGKTTILykLk--~~E~------v-----tt-----------vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLK--LGEI------V-----TT-----------VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred EEEEEEeccCCCceeeeEeec--cCCc------c-----cC-----------CCccccceeEEEEcceEEEEEecCCCcc
Confidence 469999999999999988872 1111 0 00 1256666777888999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCc--chhHHHHHHHHHH---cCCCEEEEEeCCCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGV--QSQSITVDRQMRR---YEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~--~~qt~~~~~~~~~---~~~p~iiviNK~D~~~~~ 208 (761)
+...+..+++..+++|+|||+++-. ...-.+..+.+.. .+.|++++.||.|++++-
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 9999999999999999999998742 2222233333322 378999999999998764
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.25 E-value=4.1e-11 Score=128.45 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=73.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcc---cccccChhhh---hhhcceeeeceEEE-----
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMDLE---REKGITIQSAATSC----- 135 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~---~~~~d~~~~e---~~~giTi~~~~~~~----- 135 (761)
.+...|+|.|.+|+|||||++.|.... |.-...-.++..... ....|....+ ...+.-+.+.....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 355679999999999999999986432 221111112222110 1111221111 11222233222111
Q ss_pred -----------eecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH--HHHHHHHcCCCEEEEEeCC
Q 004316 136 -----------AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT--VDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 136 -----------~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~--~~~~~~~~~~p~iiviNK~ 202 (761)
...++.+.||||+|... .+.. ....||.+++|++...|...|... ++.. .-++|+||+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aDIiVVNKa 204 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMEL------ADLIVINKA 204 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhh------hheEEeehh
Confidence 23468999999999873 2222 577899999998866665555432 2222 248999999
Q ss_pred CCCCC
Q 004316 203 DRMGA 207 (761)
Q Consensus 203 D~~~~ 207 (761)
|+...
T Consensus 205 Dl~~~ 209 (332)
T PRK09435 205 DGDNK 209 (332)
T ss_pred cccch
Confidence 98643
No 293
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.24 E-value=7.9e-11 Score=121.89 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=79.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
..++|+|.|+||+|||||++++......+. + + +=+|-.....+++.+..++++|||||.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA------~------Y---------PFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVA------P------Y---------PFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccC------C------C---------CccccceeEeeeecCCceEEEecCCcc
Confidence 678999999999999999999953322221 1 1 223455566778888889999999998
Q ss_pred CCc--------HHHHHHHHHh-cCeEEEEEeCCCC----cchhHHHHHHHH-HHcCCCEEEEEeCCCCCC
Q 004316 151 VDF--------TVEVERALRV-LDGAILVLCSVGG----VQSQSITVDRQM-RRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f--------~~~~~~al~~-aD~ailVvDa~~g----~~~qt~~~~~~~-~~~~~p~iiviNK~D~~~ 206 (761)
-|= ..+...||+. .+++++++|+++. +..| ..+|+.. ..++.|+++|+||+|...
T Consensus 226 LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 226 LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcCCCeEEEEecccccc
Confidence 542 2345667764 5777889998753 2233 2344444 345789999999999864
No 294
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.24 E-value=2.1e-11 Score=111.78 Aligned_cols=113 Identities=21% Similarity=0.158 Sum_probs=73.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+|+|..|+|||||+++|+..... +........+.++.............+.++|++|+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP-----------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-------------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc-----------------ccccccccCCCcEEEEEEEecCCceEEEEEecCcccee
Confidence 5899999999999999999754322 00000111233343333344444456999999999888
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHH---HHH--cCCCEEEEEeCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQ---MRR--YEVPRLAFINKLD 203 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~---~~~--~~~p~iiviNK~D 203 (761)
.......+..+|++|+|+|+++....+. ..++.. ... .++|+++|.||.|
T Consensus 64 ~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 64 YSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7776667999999999999987543332 222222 221 3599999999998
No 295
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.2e-11 Score=107.29 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=88.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+-+.++.++|+.|.|||.|+.+++... .++. . ...-|+...+..+++..+..++.||||+|
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~k--------fkDd---------s--sHTiGveFgSrIinVGgK~vKLQIWDTAG 67 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENK--------FKDD---------S--SHTIGVEFGSRIVNVGGKTVKLQIWDTAG 67 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhh--------hccc---------c--cceeeeeecceeeeecCcEEEEEEeeccc
Confidence 456789999999999999999996431 1111 0 01145666666666666778999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH---cCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~iiviNK~D~~~ 206 (761)
+++|.+.+..++|.|-+|++|.|++..........|-. ++. .++-+|++.||-|+..
T Consensus 68 QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 68 QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 99999999999999999999999998766666665532 233 3455677779999853
No 296
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.5e-11 Score=106.74 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeee----ceEEEeecCeEEEEE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS----AATSCAWKDYQINII 145 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~----~~~~~~~~~~~i~li 145 (761)
+-+.+|+++|..|+|||.|+.++. .|.. .+| .|.|+.. ....++.+..++.||
T Consensus 5 kflfkivlvgnagvgktclvrrft--qglf------ppg---------------qgatigvdfmiktvev~gekiklqiw 61 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QGLF------PPG---------------QGATIGVDFMIKTVEVNGEKIKLQIW 61 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--ccCC------CCC---------------CCceeeeeEEEEEEEECCeEEEEEEe
Confidence 456789999999999999999994 2222 222 2333322 222333445789999
Q ss_pred eCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH----HHHHHHcCCCEEEEEeCCCCC
Q 004316 146 DTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITV----DRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 146 DTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~----~~~~~~~~~p~iiviNK~D~~ 205 (761)
||+|+++|.+.+.+++|.|++.|+|.|.+......-.-- +++-...++-.|+|.||+|+.
T Consensus 62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 999999999999999999999999999886544333222 222233345558999999984
No 297
>PLN00023 GTP-binding protein; Provisional
Probab=99.22 E-value=1.2e-10 Score=122.94 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-------------e
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-------------W 137 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-------------~ 137 (761)
...+|+++|..++|||||+.+++... .. .. ....-|.++......+. .
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~--F~------~~-----------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~ 80 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGS--SI------AR-----------PPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC--cc------cc-----------cCCceeeeEEEEEEEECCcccccccccccCC
Confidence 34579999999999999999996321 00 00 00012333322222221 1
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHHc---------------CCCEEEEEeC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY---------------EVPRLAFINK 201 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~---------------~~p~iiviNK 201 (761)
+...++||||+|+..|.......++.+|++|+|+|.+..........|. .+... ++|++||.||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 2367999999999999999999999999999999998754444444332 23222 4789999999
Q ss_pred CCCCC
Q 004316 202 LDRMG 206 (761)
Q Consensus 202 ~D~~~ 206 (761)
+|+..
T Consensus 161 ~DL~~ 165 (334)
T PLN00023 161 ADIAP 165 (334)
T ss_pred ccccc
Confidence 99964
No 298
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=1e-10 Score=106.21 Aligned_cols=117 Identities=21% Similarity=0.155 Sum_probs=86.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
++-..+|+|.+++|||+|+-++...+- . + +.++ ..|+........++....++.||||+|+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF--------s-~---sYit-------TiGvDfkirTv~i~G~~VkLqIwDtAGq 67 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF--------S-G---SYIT-------TIGVDFKIRTVDINGDRVKLQIWDTAGQ 67 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc--------c-c---ceEE-------EeeeeEEEEEeecCCcEEEEEEeecccH
Confidence 455678999999999999988843210 0 0 1110 0244444444445545578999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC---CCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE---VPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~---~p~iiviNK~D~~~ 206 (761)
+.|...+..+.+..+++|+|.|.+.|.......-|-+-.+.+ +|-++|.||.|.++
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 999999999999999999999999998877777666555544 56799999999864
No 299
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.18 E-value=4.5e-10 Score=120.39 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=25.6
Q ss_pred cceeEeecccCCCcchHHHHH-HHHhhCCC
Q 004316 317 KFIPVFMGSAFKNKGVQPLLD-GVLSYLPC 345 (761)
Q Consensus 317 ~~~Pv~~~SA~~~~Gi~~Lld-~i~~~lPs 345 (761)
.+.+++++||+.+.|+..|.+ .+.+++|.
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 356788999999999999998 69999985
No 300
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.15 E-value=7e-10 Score=113.23 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (761)
.+|+++|..|+|||||+++|....-. .+....+............ ..++.+|||+|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq 64 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP---------------------EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc---------------------ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH
Confidence 68999999999999999999632110 0001111111111111111 467999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCC-CcchhHHHHHH-HHHHc---CCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVG-GVQSQSITVDR-QMRRY---EVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~-g~~~qt~~~~~-~~~~~---~~p~iiviNK~D~~~~ 207 (761)
.+|...+..+.+.++++++++|... -........|. .+... +.|++++.||+|+...
T Consensus 65 ~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 65 EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 9999999999999999999999985 22333333443 44443 5899999999999754
No 301
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.13 E-value=4.5e-10 Score=118.58 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (761)
-||+++|+.|+|||||+|+|+...-.. ..+.. +.......+.+++......+..++ ..+++|||||.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~-~~~~~----------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIP-SDYPP----------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcc-ccCCC----------CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 489999999999999999996432111 10000 000111223334444445555555 57999999998
Q ss_pred CCcHH---------------------HHHHHHH-------hcCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004316 151 VDFTV---------------------EVERALR-------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINK 201 (761)
Q Consensus 151 ~~f~~---------------------~~~~al~-------~aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviNK 201 (761)
.++.. +..+..+ .+|++++++++. .++...+...++.+.. ++|+++|+||
T Consensus 74 gd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK 152 (276)
T cd01850 74 GDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAK 152 (276)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEEC
Confidence 66532 1111112 378899999987 4777778888888875 8999999999
Q ss_pred CCCCCCC-hHHHHHHHHHHh
Q 004316 202 LDRMGAD-PWKVLDQARSKL 220 (761)
Q Consensus 202 ~D~~~~~-~~~~~~~i~~~l 220 (761)
+|+...+ .....+.+++.+
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l 172 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDI 172 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHH
Confidence 9996422 223334444444
No 302
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.7e-10 Score=108.21 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
-+|.|+|.-++||||+++++-..-... +-.-.+. +--.|+.....+.+..+..+.+||.-|+..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~--------------~~~l~~~--ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKA--------------YGGLNPS--KITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhh--------------hcCCCHH--HeecccceeecceeeccceeEEEEcCChHH
Confidence 368999999999999999883211000 0000000 112355566666777788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcc-----hhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQ-----SQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~-----~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
..+.+..++..|+++|+||||++... .+-+.+...-...++|+++.+||-|+.++
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 99999999999999999999987422 22234445555679999999999998654
No 303
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.12 E-value=2.6e-10 Score=117.55 Aligned_cols=203 Identities=20% Similarity=0.198 Sum_probs=124.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
-.|+++|.|++|||||+++|.. .-+..+ ++ .-+|.......+++++.+++|+|+||...
T Consensus 64 a~v~lVGfPsvGKStLL~~LTn---t~seva------------~y------~FTTl~~VPG~l~Y~ga~IQild~Pgii~ 122 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTN---TKSEVA------------DY------PFTTLEPVPGMLEYKGAQIQLLDLPGIIE 122 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhC---CCcccc------------cc------CceecccccceEeecCceEEEEcCccccc
Confidence 3699999999999999999943 222211 11 23477778888999999999999999853
Q ss_pred c-------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCC-----CEEEEEeCCCCCCCC----------hH
Q 004316 153 F-------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-----PRLAFINKLDRMGAD----------PW 210 (761)
Q Consensus 153 f-------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~-----p~iiviNK~D~~~~~----------~~ 210 (761)
= -.++...+|.||.+++|+|+.+.... -..+.+.+...|+ |.-+.+.|-+.-+.+ -.
T Consensus 123 gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~ 201 (365)
T COG1163 123 GASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDE 201 (365)
T ss_pred CcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCH
Confidence 2 24578889999999999999876432 3345555655543 445555554443211 13
Q ss_pred HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q 004316 211 KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKL 290 (761)
Q Consensus 211 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l 290 (761)
+.+..+.+.++.+.+.+. |..+-....++|.+.....|-+.- ..
T Consensus 202 ~~ir~iL~Ey~I~nA~V~--Ir~dvTlDd~id~l~~nrvY~p~l----~v------------------------------ 245 (365)
T COG1163 202 DTVRAILREYRIHNADVL--IREDVTLDDLIDALEGNRVYKPAL----YV------------------------------ 245 (365)
T ss_pred HHHHHHHHHhCcccceEE--EecCCcHHHHHHHHhhcceeeeeE----EE------------------------------
Confidence 566666677776655433 233333444455444331111100 00
Q ss_pred HHHHhcC-CCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCC
Q 004316 291 GDMFLSD-EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLP 344 (761)
Q Consensus 291 ~e~~l~~-~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lP 344 (761)
+++ ..+..+++....+ ..+.+++||.+++|++.|.+.|.+.|-
T Consensus 246 ----~NKiD~~~~e~~~~l~~-------~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 246 ----VNKIDLPGLEELERLAR-------KPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ----EecccccCHHHHHHHHh-------ccceEEEecccCCCHHHHHHHHHHhhC
Confidence 001 1122223322222 125777799999999999999998763
No 304
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=113.46 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-ecCeEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG 149 (761)
-+-.|+++|-||+|||||++.+......|. || +=+|.......+. ..+..|.+-|.||
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIa---------------dY------pFTTL~PnLGvV~~~~~~sfv~ADIPG 216 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIA---------------DY------PFTTLVPNLGVVRVDGGESFVVADIPG 216 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCccc---------------CC------ccccccCcccEEEecCCCcEEEecCcc
Confidence 345799999999999999999954332221 11 1234444333333 3456799999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCc----chhHHHHHHHHHHc-----CCCEEEEEeCCCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVGGV----QSQSITVDRQMRRY-----EVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~g~----~~qt~~~~~~~~~~-----~~p~iiviNK~D~~ 205 (761)
.++ +--...+-+..|-+.+.|||...-. ...-..++..+.++ ++|.++|+||+|+.
T Consensus 217 LIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 217 LIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred cccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 853 1222344455678999999987432 23334445555543 78999999999964
No 305
>PTZ00099 rab6; Provisional
Probab=99.08 E-value=4.8e-10 Score=110.56 Aligned_cols=69 Identities=19% Similarity=0.067 Sum_probs=53.7
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004316 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (761)
-+...+.||||||+.+|...+..+++.+|++|+|+|++.....+....|. .+.. .++|+++|.||+|+.
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 34578999999999999999999999999999999998865444433332 2222 357889999999984
No 306
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.08 E-value=2.4e-10 Score=104.96 Aligned_cols=114 Identities=21% Similarity=0.052 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|..-+|||+|+-+.+... +.+.+-..- ..++.....+++.....++||||+|+++
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~Enk-----------------Fn~kHlsTl--QASF~~kk~n~ed~ra~L~IWDTAGQEr 74 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENK-----------------FNCKHLSTL--QASFQNKKVNVEDCRADLHIWDTAGQER 74 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhh-----------------cchhhHHHH--HHHHhhcccccccceeeeeeeeccchHh
Confidence 468999999999999998885321 111100000 0012222233344456899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH----HHHHcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR----QMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~----~~~~~~~p~iiviNK~D~~ 205 (761)
|...-.-++|.+|++++|+|.++....|-...|- .+.-..+-.+||.||+|+.
T Consensus 75 fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 75 FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 9888788899999999999999988888776663 3333456679999999984
No 307
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.07 E-value=1.4e-09 Score=110.30 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=71.2
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhccee---eeceE------------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI---QSAAT------------ 133 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi---~~~~~------------ 133 (761)
...+++|+++|+.|+|||||+++|+...+...+.+-+.+... .-.|....+ ..|..+ .....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~--~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVI--TKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCC--CcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHH
Confidence 357999999999999999999999977443223222222210 011221111 122211 00000
Q ss_pred -EEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 134 -SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 134 -~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.....+..+.||+|.|...... ......+..+.|+|+..+...+. +.....+.|.++++||+|+.+
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 0011246899999999321111 11123566778999987654322 222335678899999999854
No 308
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.8e-09 Score=104.93 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=83.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+.|-++|..|+|||+|+-.|.+.. .+ .+ -+++....+.+..++....|||-|||.+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs--------~~-----~T-----------vtSiepn~a~~r~gs~~~~LVD~PGH~r 94 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS--------HR-----GT-----------VTSIEPNEATYRLGSENVTLVDLPGHSR 94 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC--------cc-----Ce-----------eeeeccceeeEeecCcceEEEeCCCcHH
Confidence 579999999999999999886421 01 11 1244445555666777799999999999
Q ss_pred cHHHHHHHHH---hcCeEEEEEeCCCCc---chhHHHHHHHH-----HHcCCCEEEEEeCCCCCCCChHHHHHH
Q 004316 153 FTVEVERALR---VLDGAILVLCSVGGV---QSQSITVDRQM-----RRYEVPRLAFINKLDRMGADPWKVLDQ 215 (761)
Q Consensus 153 f~~~~~~al~---~aD~ailVvDa~~g~---~~qt~~~~~~~-----~~~~~p~iiviNK~D~~~~~~~~~~~~ 215 (761)
........+. .+-++|+|||+..-. ..-.+..+..+ ...++|++++.||.|+.-|.+.+.+++
T Consensus 95 lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~ 168 (238)
T KOG0090|consen 95 LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQ 168 (238)
T ss_pred HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHH
Confidence 9888877776 789999999987532 22222223322 245678999999999988876554433
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.02 E-value=4.8e-10 Score=113.71 Aligned_cols=138 Identities=28% Similarity=0.381 Sum_probs=77.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH---cCC------ceeeeeeccCCcccccccChhhhhhhcceeeeceEEE------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY---TGR------IHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC------ 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~---~g~------i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~------ 135 (761)
+-..|+|.|+||+|||||+++|... .|. ++....+.+|.-+....-........|+-+.+....-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4567999999999999999999743 222 1222223333222222222333344677666655442
Q ss_pred ----------eecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH--HHHHHHHcCCCEEEEEeCCC
Q 004316 136 ----------AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT--VDRQMRRYEVPRLAFINKLD 203 (761)
Q Consensus 136 ----------~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~--~~~~~~~~~~p~iiviNK~D 203 (761)
+.-++.+.||.|-|.-. +++ .....+|..++|+-+..|...|... +++. .-|+|+||.|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 22469999999999754 222 2357899999999998887777543 3333 4599999999
Q ss_pred CCCCChHHHHHHHHHH
Q 004316 204 RMGADPWKVLDQARSK 219 (761)
Q Consensus 204 ~~~~~~~~~~~~i~~~ 219 (761)
++++ ++...+++..
T Consensus 179 ~~gA--~~~~~~l~~~ 192 (266)
T PF03308_consen 179 RPGA--DRTVRDLRSM 192 (266)
T ss_dssp HHHH--HHHHHHHHHH
T ss_pred hHHH--HHHHHHHHHH
Confidence 7543 2344444443
No 310
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.02 E-value=4.6e-09 Score=116.06 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.1
Q ss_pred cceeEeecccCCCcchHH-HHHHHHhhCCC
Q 004316 317 KFIPVFMGSAFKNKGVQP-LLDGVLSYLPC 345 (761)
Q Consensus 317 ~~~Pv~~~SA~~~~Gi~~-Lld~i~~~lPs 345 (761)
.+.+++++||..+.+++. |++.+.+++|.
T Consensus 243 ~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 243 KYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 345678889999999999 89999999985
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.02 E-value=5.4e-10 Score=115.14 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=38.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHH--------HhcCeEEEEEeCCCCcchhHH-----HHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 141 QINIIDTPGHVDFTVEVERAL--------RVLDGAILVLCSVGGVQSQSI-----TVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al--------~~aD~ailVvDa~~g~~~qt~-----~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+.|+||||+.+|.......- ...=++|+++|+..-...... ..+....+.++|.|.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 799999999998765543333 234478999998754332222 122334557999999999999965
No 312
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.02 E-value=3.2e-09 Score=106.14 Aligned_cols=115 Identities=21% Similarity=0.169 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
-.+|+++|..|+|||+|+-+++...- .+..+...+ +.......++.....+.|+||+|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-----------------~~~y~ptie---d~y~k~~~v~~~~~~l~ilDt~g~~ 62 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-----------------VEDYDPTIE---DSYRKELTVDGEVCMLEILDTAGQE 62 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-----------------ccccCCCcc---ccceEEEEECCEEEEEEEEcCCCcc
Confidence 35799999999999999998864211 111000000 2222233334345778899999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHH----HHcCCCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQM----RRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~----~~~~~p~iiviNK~D~~~ 206 (761)
+|......+++.+|+-++|++.++..+.+....+ .++ ....+|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 63 EFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred cChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 9999999999999999999999886555544333 233 224689999999999853
No 313
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.97 E-value=2.1e-09 Score=107.87 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=46.0
Q ss_pred eEEEEEeCCCCCC-cH-----HHHHHHHH--hcCeEEEEEeCCCCcchhH-----HHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 140 YQINIIDTPGHVD-FT-----VEVERALR--VLDGAILVLCSVGGVQSQS-----ITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 140 ~~i~liDTPG~~~-f~-----~~~~~al~--~aD~ailVvDa~~g~~~qt-----~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.++.||||||+++ |. .....++. ..-+++.|||....-.+.| .....++.+.++|.|++.||.|..+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 6799999999965 31 11222232 2345677999765444333 2334456678999999999999987
Q ss_pred CCh
Q 004316 207 ADP 209 (761)
Q Consensus 207 ~~~ 209 (761)
..+
T Consensus 196 ~~f 198 (366)
T KOG1532|consen 196 SEF 198 (366)
T ss_pred cHH
Confidence 654
No 314
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.5e-09 Score=98.40 Aligned_cols=110 Identities=23% Similarity=0.189 Sum_probs=78.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|-++|-.|+||||+.-++- . |++... .-|+......+.+++-++++||.-|+-..
T Consensus 20 rililgldGaGkttIlyrlq--v------gevvtt----------------kPtigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQ--V------GEVVTT----------------KPTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred EEEEeeccCCCeeEEEEEcc--c------Cccccc----------------CCCCCcCccccccccccceeeEccCcccc
Confidence 57899999999999976661 1 111111 12444555667789999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcc--hhHHHHHHHH---HHcCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQ--SQSITVDRQM---RRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~--~qt~~~~~~~---~~~~~p~iiviNK~D~~~~ 207 (761)
.+-+..++...|.+|.|||+.+-.. ....+....+ +-.+...++|.||+|..++
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 9999999999999999999976432 2223333333 2345567889999998654
No 315
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.94 E-value=5.9e-10 Score=93.27 Aligned_cols=67 Identities=37% Similarity=0.648 Sum_probs=61.5
Q ss_pred ccEEEEEEEcceecCCCEEEe--cCCCeE---EecCcEEEEecCceeecceecCCCEEEEecc-c-cccCceee
Q 004316 386 GQLTYLRIYEGVIRKGDFIIN--VNTGKK---IKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFT 452 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~--~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~ 452 (761)
|+++++||+||+|++||+|++ ..++++ .+|.+|+.+++...++++.+.||+++++.++ + +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 545555 8999999999999999999999999999999 7 79999996
No 316
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-08 Score=92.36 Aligned_cols=111 Identities=17% Similarity=0.095 Sum_probs=80.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.|..+|-.++||||++-.|....... . --|+......+.+++..+|+||..|+.+.
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~-------------~-----------ipTvGFnvetVtykN~kfNvwdvGGqd~i 74 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVT-------------T-----------IPTVGFNVETVTYKNVKFNVWDVGGQDKI 74 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCcc-------------c-----------ccccceeEEEEEeeeeEEeeeeccCchhh
Confidence 48899999999999999885321110 0 01333334456688999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCc--chhHHHH---HHHHHHcCCCEEEEEeCCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGV--QSQSITV---DRQMRRYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~--~~qt~~~---~~~~~~~~~p~iiviNK~D~~~~~ 208 (761)
.+.+..++....++|+|+|+.+.. ++.-.++ +..-.....|++|..||-|++++.
T Consensus 75 RplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 75 RPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred hHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 999999999999999999987542 1111122 222233477899999999998775
No 317
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.92 E-value=2.2e-08 Score=103.92 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
..-.||+++|.+|+|||||+|+|+....... .++ .+.|.........+++..+++|||||
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v--------------~~~------~~~T~~~~~~~~~~~g~~i~vIDTPG 88 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT--------------SAF------QSETLRVREVSGTVDGFKLNIIDTPG 88 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccc--------------CCC------CCceEEEEEEEEEECCeEEEEEECCC
Confidence 4567899999999999999999975432110 011 12344444555667889999999999
Q ss_pred CCCcHH------H----HHHHHH--hcCeEEEEEeCCC-CcchhHHHHHHHHHH-cC----CCEEEEEeCCCCC
Q 004316 150 HVDFTV------E----VERALR--VLDGAILVLCSVG-GVQSQSITVDRQMRR-YE----VPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~------~----~~~al~--~aD~ailVvDa~~-g~~~qt~~~~~~~~~-~~----~p~iiviNK~D~~ 205 (761)
..+... . +.+++. ..|++++|..... ........+++.... ++ .++++|+||+|..
T Consensus 89 l~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 89 LLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 987631 1 112222 3566666654432 233334444444433 33 3567788888774
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.91 E-value=3.3e-09 Score=94.24 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC---
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG--- 149 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG--- 149 (761)
.+++++|.+++|||||+++|-.+.-... ..-.++|++. ..|||||
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------------------------------KTQAve~~d~--~~IDTPGEy~ 49 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------------------------------KTQAVEFNDK--GDIDTPGEYF 49 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------------------------------ccceeeccCc--cccCCchhhh
Confidence 3689999999999999999942211110 1111233322 3689999
Q ss_pred -CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 -HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 -~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
|..++......+..+|.+++|-.++++.+.-. -..+.-...|+|-+++|.|++
T Consensus 50 ~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 50 EHPRWYHALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred hhhHHHHHHHHHhhccceeeeeecccCccccCC---cccccccccceEEEEeccccc
Confidence 35556666677788999999999988643221 123334567799999999996
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.91 E-value=3.7e-08 Score=105.60 Aligned_cols=131 Identities=23% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcc--cccc-cChhh---hhhhcceeeeceEE------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV--GAKM-DSMDL---EREKGITIQSAATS------ 134 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~--~~~~-d~~~~---e~~~giTi~~~~~~------ 134 (761)
.+...|+|+|.+|+|||||++.|.... |.....-.++..... ..+. |.... ....+..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 456789999999999999999987532 221111111111100 0000 10000 00112222111111
Q ss_pred ----------EeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 135 ----------CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 135 ----------~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
++..++++.||||||... .....+..+|.++++.+...+...+.. .. ...++|.++++||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~---~~-~l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGI---KA-GLMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHH---HH-HHhhhccEEEEEcccc
Confidence 233579999999999752 223457788999988765544322221 11 1247888999999998
Q ss_pred CCC
Q 004316 205 MGA 207 (761)
Q Consensus 205 ~~~ 207 (761)
.+.
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 754
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.90 E-value=1.4e-08 Score=104.21 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=85.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc------CCceee-eee---ccCCcc--------cccccChhhh------hh--h
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT------GRIHEI-HEV---RGRDGV--------GAKMDSMDLE------RE--K 124 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~------g~i~~~-~~v---~~~~~~--------~~~~d~~~~e------~~--~ 124 (761)
..+.|+++|+.++||||++++|+... |.+.+. -.+ +....+ ..+.|..+.. .+ .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 56789999999999999999997542 222220 000 000000 0011111111 10 0
Q ss_pred --cceeeeceEEEeec---CeEEEEEeCCCCCCc-------------HHHHHHHHH-hcCeEEEEEeCCCCcchhH-HHH
Q 004316 125 --GITIQSAATSCAWK---DYQINIIDTPGHVDF-------------TVEVERALR-VLDGAILVLCSVGGVQSQS-ITV 184 (761)
Q Consensus 125 --giTi~~~~~~~~~~---~~~i~liDTPG~~~f-------------~~~~~~al~-~aD~ailVvDa~~g~~~qt-~~~ 184 (761)
+-.+......++.. -..++||||||..+. ...+..+++ ..+.+++|+|+..++..+. .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 11122222233322 268999999999532 123566777 4569999999999888877 588
Q ss_pred HHHHHHcCCCEEEEEeCCCCCCCC
Q 004316 185 DRQMRRYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 185 ~~~~~~~~~p~iiviNK~D~~~~~ 208 (761)
.+.+...+.|.++|+||+|.....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCcc
Confidence 888888999999999999987543
No 321
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.88 E-value=1.2e-09 Score=97.51 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=77.3
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHHH
Q 004316 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (761)
Q Consensus 77 iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~ 156 (761)
++|.+..|||.|+-++ ..|.. -.+ +.++ .-||...........+..++.+|||+|+++|.+.
T Consensus 2 llgds~~gktcllir~--kdgaf------l~~---~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsv 63 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRF--KDGAF------LAG---NFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV 63 (192)
T ss_pred ccccCccCceEEEEEe--ccCce------ecC---ceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhh
Confidence 6899999999986544 12221 111 1111 0345555555555556688999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHH---HcCCCEEEEEeCCCCC
Q 004316 157 VERALRVLDGAILVLCSVGGVQSQSITVDR-QMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 157 ~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~---~~~~p~iiviNK~D~~ 205 (761)
+..+++.+|+.+++.|............|- +.. +..+.+.++.||+|+.
T Consensus 64 t~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 64 THAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred hHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 999999999999999998766655554442 222 3456778899999984
No 322
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=5.1e-10 Score=118.73 Aligned_cols=133 Identities=30% Similarity=0.366 Sum_probs=107.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeee---------e-eccCCcccccccChhhhhhhcceeeeceEEEeecCe
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------E-VRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY 140 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~---------~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 140 (761)
..+||+++||.++||||+.. +..|.++++. . ..+...+.+.+|....|+++|++++.....+....+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred cccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 46799999999999999987 4455554421 0 011234578999999999999998887777777789
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCC-CEEEEEeCCCCCC
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEV-PRLAFINKLDRMG 206 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~-p~iiviNK~D~~~ 206 (761)
.+++||.|||.+|...+....++||.+++.|.+..| ...||+++...+..+++ ++++.+||||...
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 999999999999999999999999999999998432 45889999999988875 4588899999753
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.85 E-value=1.2e-08 Score=104.68 Aligned_cols=141 Identities=26% Similarity=0.312 Sum_probs=82.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH---HcCCceeeeeeccCCcc---cccccCh---hhhhhhcceeeeceEEEe-----
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF---YTGRIHEIHEVRGRDGV---GAKMDSM---DLEREKGITIQSAATSCA----- 136 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~---~~g~i~~~~~v~~~~~~---~~~~d~~---~~e~~~giTi~~~~~~~~----- 136 (761)
+-..|+|.|.||+|||||++.|.. ..|.....-.+++.+.+ +..-|.. ......|+-+.+....-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 344699999999999999999863 33432222222322110 1111221 112234555554443322
Q ss_pred -----------ecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 137 -----------WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 137 -----------~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
--++.+.||.|-|.-.-.- .-...+|..++|.=+..|...|.+.. --+.+--|+||||.|+.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~ 202 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRK 202 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChh
Confidence 2358999999998743221 23467999999998888888877642 11223349999999976
Q ss_pred CCChHHHHHHHHHHh
Q 004316 206 GADPWKVLDQARSKL 220 (761)
Q Consensus 206 ~~~~~~~~~~i~~~l 220 (761)
+++ ....+++..+
T Consensus 203 ~A~--~a~r~l~~al 215 (323)
T COG1703 203 GAE--KAARELRSAL 215 (323)
T ss_pred hHH--HHHHHHHHHH
Confidence 543 4444444444
No 324
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=2.6e-09 Score=100.23 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=83.7
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
.+.+...+++|+|..++||||++.+.+ .|...+ +...+...|+.. ..+.+..++..+.+||
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryC--kgifTk------dykktIgvdfle-----------rqi~v~~Edvr~mlWd 75 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTK------DYKKTIGVDFLE-----------RQIKVLIEDVRSMLWD 75 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHh--cccccc------ccccccchhhhh-----------HHHHhhHHHHHHHHHH
Confidence 344567889999999999999999996 233221 100011222221 1112223456788999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH---HHHcCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ---MRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~---~~~~~~p~iiviNK~D~~ 205 (761)
|+|+.+|...+..++|.|.+++||++.++-.......-|.. ..-..+|.++|-||+|+.
T Consensus 76 tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 76 TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 99999999999999999999999999887655444444432 233589999999999984
No 325
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.81 E-value=7e-08 Score=103.66 Aligned_cols=152 Identities=11% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhc---ceeeece---EEEee-----c
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG---ITIQSAA---TSCAW-----K 138 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~g---iTi~~~~---~~~~~-----~ 138 (761)
.--..|+++|++++|||||+++|....- +.. +.+.....+..|..+... .| +|.+... -.++. -
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~---i~~~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~ 89 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLV-LPN---ISNEYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGT 89 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhc-ccc---ccchhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEeccCCC
Confidence 3445799999999999999999975421 111 111100122223222221 35 3333333 11111 1
Q ss_pred CeEEEEEeCCCCCC-------------------------cHHH----HHHHHH-hcCeEEEEE-eCC------CCcchhH
Q 004316 139 DYQINIIDTPGHVD-------------------------FTVE----VERALR-VLDGAILVL-CSV------GGVQSQS 181 (761)
Q Consensus 139 ~~~i~liDTPG~~~-------------------------f~~~----~~~al~-~aD~ailVv-Da~------~g~~~qt 181 (761)
...+.||||+|+.+ |... +...+. .+|.+|+|. |++ ++.....
T Consensus 90 ~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 90 KFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred cccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH
Confidence 26899999999732 2211 455677 899999999 885 5566777
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceee
Q 004316 182 ITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 182 ~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 226 (761)
++++..+++.++|+++++||.|-......+..+++.++++.++.+
T Consensus 170 e~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~ 214 (492)
T TIGR02836 170 ERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLA 214 (492)
T ss_pred HHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEE
Confidence 888999999999999999999944333445566777787765443
No 326
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.2e-08 Score=89.18 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=81.4
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEe
Q 004316 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (761)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (761)
++-.-|.+..|+|..|+|||.|+..+....-+.+- +. .-|+......+.+.....++.+||
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadc-----------------ph--tigvefgtriievsgqkiklqiwd 66 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-----------------PH--TIGVEFGTRIIEVSGQKIKLQIWD 66 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcC-----------------Cc--ccceecceeEEEecCcEEEEEEee
Confidence 34456788899999999999999988543211110 00 012333333333334457899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHHcCCC---EEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRYEVP---RLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~~~p---~iiviNK~D~~ 205 (761)
|+|+++|...+.++++.+-++++|.|.+..........|-. ++..-.| ++++.||.|+.
T Consensus 67 tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 99999999999999999999999999987655544444432 3333333 56677999985
No 327
>PTZ00258 GTP-binding protein; Provisional
Probab=98.80 E-value=2.8e-07 Score=100.90 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=58.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC------------
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------ 139 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 139 (761)
-..|+|+|.||+|||||+|+|......+ . ++ .++|+......+.+.+
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v------~---------n~------pftTi~p~~g~v~~~d~r~~~l~~~~~~ 79 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPA------E---------NF------PFCTIDPNTARVNVPDERFDWLCKHFKP 79 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccc------c---------CC------CCCcccceEEEEecccchhhHHHHHcCC
Confidence 4479999999999999999994322111 1 11 4556666665555542
Q ss_pred -----eEEEEEeCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 004316 140 -----YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (761)
Q Consensus 140 -----~~i~liDTPG~~~-------f~~~~~~al~~aD~ailVvDa~ 174 (761)
.++.|+||||... +.......++.+|++++|||+.
T Consensus 80 ~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 80 KSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3599999999753 3345677789999999999984
No 328
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.80 E-value=3.6e-07 Score=98.92 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=55.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--------------
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-------------- 139 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------------- 139 (761)
+|+|+|.||+|||||+|+|....- . +.+ + +++|++.....+.+.+
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~~---~---v~n---------y------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~ 62 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGA---E---AAN---------Y------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKK 62 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---e---ecc---------c------ccccccceEEEEEeccccchhhHHhcCCcc
Confidence 699999999999999999954321 1 111 1 3445544444443332
Q ss_pred ---eEEEEEeCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 004316 140 ---YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (761)
Q Consensus 140 ---~~i~liDTPG~~~-------f~~~~~~al~~aD~ailVvDa~ 174 (761)
..+.|+||||..+ +.......++.+|++++|||+.
T Consensus 63 ~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 63 IVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3699999999753 2334566789999999999995
No 329
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.79 E-value=9.8e-08 Score=95.90 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=37.0
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE--EEEEeCCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR--LAFINKLDRMG 206 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~--iiviNK~D~~~ 206 (761)
+....+|+|.|.. ...... -..+|.+|+|+|+.++...+.. . ..++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~--~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK----G--GPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh----h--HhHhhhccEEEEEhhhccc
Confidence 4678899999931 111111 1236899999999987653321 0 123334 99999999863
No 330
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.6e-08 Score=93.16 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=50.5
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHHc----CCCEEEEEeCCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY----EVPRLAFINKLDRMG 206 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~----~~p~iiviNK~D~~~ 206 (761)
..+.||||+|+++|.+.+...++.|=+.++++|-+..-..-..+.| .+++.+ +--++++.||.|+.+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 5788999999999999999999999999999998864333333333 333332 334688889999853
No 331
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.79 E-value=4.3e-08 Score=90.96 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=74.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-ecCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~~ 152 (761)
++.+||..-+|||+|+..+. .|.... ..+- + -|+...+..+.+. -...++.||||+|+++
T Consensus 10 rlivigdstvgkssll~~ft--~gkfae---lsdp---t-----------vgvdffarlie~~pg~riklqlwdtagqer 70 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFT--EGKFAE---LSDP---T-----------VGVDFFARLIELRPGYRIKLQLWDTAGQER 70 (213)
T ss_pred EEEEEcCCcccHHHHHHHHh--cCcccc---cCCC---c-----------cchHHHHHHHhcCCCcEEEEEEeeccchHH
Confidence 46799999999999999884 222211 1110 0 1222111111111 1135789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCC--C----EEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV--P----RLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~--p----~iiviNK~D~~ 205 (761)
|.+.+.+++|.+=++++|.|.++-........|-.-.++++ | .++|..|.|+.
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 99999999999999999999988766666666644333322 2 36777999985
No 332
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.77 E-value=7.2e-08 Score=98.43 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=77.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~~ 152 (761)
+|.++|+.++||||+.+.+...... . +...-|.|++.....+.. ....+++||+||+.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p---------~-----------dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~ 60 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP---------R-----------DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD 60 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G---------G-----------GGGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc---------h-----------hccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence 4889999999999999877532110 0 111235566666666653 456999999999988
Q ss_pred cHHH-----HHHHHHhcCeEEEEEeCCCCcchhHHH----HHHHHHHc--CCCEEEEEeCCCCCCCChH-HHHHHHHHHh
Q 004316 153 FTVE-----VERALRVLDGAILVLCSVGGVQSQSIT----VDRQMRRY--EVPRLAFINKLDRMGADPW-KVLDQARSKL 220 (761)
Q Consensus 153 f~~~-----~~~al~~aD~ailVvDa~~g~~~qt~~----~~~~~~~~--~~p~iiviNK~D~~~~~~~-~~~~~i~~~l 220 (761)
|... ....++.+++.|+|+|+.......... .+..+.+. ++.+.+++.|||+...+.. +..+++.+.+
T Consensus 61 ~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 61 FMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp TTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 7664 466789999999999998433333332 33334333 6778999999999765432 3334444433
No 333
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.77 E-value=5.3e-08 Score=88.23 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~ 151 (761)
.+|.++|--|+||||++..|-.+.. + ...+..|..+. .+.+.+ .++|+||..|+.
T Consensus 18 irilllGldnAGKTT~LKqL~sED~--------~------------hltpT~GFn~k----~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDP--------R------------HLTPTNGFNTK----KVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCCh--------h------------hccccCCcceE----EEeecCcEEEEEEecCCcc
Confidence 4589999999999999999932110 0 00111343332 233444 899999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcc--hhHH---HHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQ--SQSI---TVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~--~qt~---~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
...+-+..++...|+.|+|||+++.-. ...+ +++...+...+|++|+.||-|+..+
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 999999999999999999999876421 1122 2233334457899999999998643
No 334
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.73 E-value=2.9e-08 Score=96.83 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=47.6
Q ss_pred CeEEEEEeCCCCCCc----HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH-cCCCEEEEEeCC
Q 004316 139 DYQINIIDTPGHVDF----TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-YEVPRLAFINKL 202 (761)
Q Consensus 139 ~~~i~liDTPG~~~f----~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~~p~iiviNK~ 202 (761)
...+.||||||..+. ...+..++..+|++|+|+++......+....+..... .+-..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 367999999998432 2557888899999999999999877666666665554 444568888985
No 335
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.66 E-value=1.3e-07 Score=79.81 Aligned_cols=76 Identities=37% Similarity=0.453 Sum_probs=65.5
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecC--CCeEEecCcEEEEecCceeecceecCCCEEEEecc---ccc
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVN--TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV---DCA 446 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl---~~~ 446 (761)
+.++|++++.+++ |+++++||++|+|++||.+++.+ .+...+|.+|+... .+++++.|||++++.+. +.+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3678999999886 99999999999999999999988 66778888888664 57899999999999886 378
Q ss_pred cCceee
Q 004316 447 SGDTFT 452 (761)
Q Consensus 447 ~GdtL~ 452 (761)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 898875
No 336
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.66 E-value=3e-07 Score=96.33 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=65.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhh--cce---eeeceEE---------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREK--GIT---IQSAATS--------- 134 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~--giT---i~~~~~~--------- 134 (761)
...+.-|+|+|.+|+|||||+++++..-..-.+.+-+.+.. .+. .+.++-+ |+. +......
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~--~t~---~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ--QTV---NDAARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc--CcH---HHHHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 45688999999999999999999986522111222222210 111 1222222 221 1110000
Q ss_pred ----EeecCeEEEEEeCCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 135 ----CAWKDYQINIIDTPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 135 ----~~~~~~~i~liDTPG~~-~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+...+..+.||++-|.. . -... -+ ..+.-+.|+++.+|... .++.-..+..+-++++||+|+.
T Consensus 176 Al~~L~~~~~d~liIEnvGnLvc-Pa~f--dl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl 243 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGNLVC-PASF--DL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLL 243 (290)
T ss_pred HHHHHhhcCCcEEEEECCCCccC-CCcc--ch-hhceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcC
Confidence 11234578899998851 1 0000 01 12345678888877431 1122233456779999999985
No 337
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.65 E-value=5.4e-07 Score=95.02 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=70.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+-.+|+++|.+|+||||++|+|+....... ..+ .+.+.........+.+.++++|||||.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~v--------------s~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL 96 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATV--------------SAF------QSEGLRPMMVSRTRAGFTLNIIDTPGL 96 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc--------------cCC------CCcceeEEEEEEEECCeEEEEEECCCC
Confidence 456899999999999999999974322110 000 011222222334467899999999999
Q ss_pred CCcHH---HHHHHHH------hcCeEEEEEeCCC-CcchhHHHHHHHHHH-cC----CCEEEEEeCCCCC
Q 004316 151 VDFTV---EVERALR------VLDGAILVLCSVG-GVQSQSITVDRQMRR-YE----VPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~---~~~~al~------~aD~ailVvDa~~-g~~~qt~~~~~~~~~-~~----~p~iiviNK~D~~ 205 (761)
.+... +....++ ..|++|+|.+... .....+..+++.+.. +| .+.|+++|+.|..
T Consensus 97 ~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 97 IEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred CchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 76522 2222333 4899999954332 234344445544433 22 4689999999975
No 338
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.65 E-value=1.6e-07 Score=81.91 Aligned_cols=82 Identities=24% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---
Q 004316 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--- 443 (761)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--- 443 (761)
+.||.+.|.+++..+. |+++.|||.+|+++.||+|++.+.+...+|+.|... ..++++|.|||.+++ .|+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~----~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC----CcCcCEECCCCEEEEEECCCCHH
Confidence 4689999999998776 999999999999999999999999988899988733 457899999999984 565
Q ss_pred ccccCceeecCC
Q 004316 444 DCASGDTFTDGS 455 (761)
Q Consensus 444 ~~~~GdtL~~~~ 455 (761)
+++.||.|++.+
T Consensus 78 ~v~~G~vl~~~~ 89 (91)
T cd03693 78 DIKRGDVAGDSK 89 (91)
T ss_pred HcCCcCEEccCC
Confidence 578999999864
No 339
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.60 E-value=2.6e-07 Score=79.09 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=66.5
Q ss_pred CcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEE--Eecc---ccc
Q 004316 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA--VFGV---DCA 446 (761)
Q Consensus 372 p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~ 446 (761)
||.++|..++..+.|++..|||.+|++++||+|++.+.+...+|+.|... ..++++|.|||.++ +.++ +++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~~~l~~~~~~~v~ 76 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDIS 76 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC----CeECCEECCCCEEEEEECCCCHHHCC
Confidence 67888888886557899999999999999999999999988889888632 46899999999998 5665 578
Q ss_pred cCceeec
Q 004316 447 SGDTFTD 453 (761)
Q Consensus 447 ~GdtL~~ 453 (761)
.|++|++
T Consensus 77 ~G~vl~~ 83 (83)
T cd03698 77 PGDVLCS 83 (83)
T ss_pred CCCEEeC
Confidence 8999874
No 340
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.59 E-value=4.6e-07 Score=98.08 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhccee-eeceEEEeecC-eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI-QSAATSCAWKD-YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~~~~-~~i~liDTP 148 (761)
...||||+|.+|+|||||+|+|..-.. -+.+ . ...|.+- ......+.... -.+.|||.|
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~-------~d~~---a---------A~tGv~etT~~~~~Y~~p~~pnv~lWDlP 94 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGH-------EDEG---A---------APTGVVETTMEPTPYPHPKFPNVTLWDLP 94 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--T-------TSTT---S-----------SSSHSCCTS-EEEE-SS-TTEEEEEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-------CCcC---c---------CCCCCCcCCCCCeeCCCCCCCCCeEEeCC
Confidence 345999999999999999999942110 0111 0 0112211 11112233322 359999999
Q ss_pred CCC--CcHHHH---HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 149 GHV--DFTVEV---ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 149 G~~--~f~~~~---~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
|.. +|..+. .-.+...|..|++.+. ........+++.+..+++|+.+|-+|+|.
T Consensus 95 G~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 95 GIGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 973 443332 1135678987776653 34567778889999999999999999995
No 341
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.56 E-value=1.1e-06 Score=85.42 Aligned_cols=122 Identities=23% Similarity=0.259 Sum_probs=63.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcce---eeece-----EEE--------
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT---IQSAA-----TSC-------- 135 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giT---i~~~~-----~~~-------- 135 (761)
++.|.+.|++|||||||+++++..-+.--+.+-+.+. ..+..|.....+..|.- +.+.. .++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D--i~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l 90 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD--IYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL 90 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece--eechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence 5789999999999999999987543222222222221 00111111111111211 11110 000
Q ss_pred -ee-cCeEEEEEeCCCC--CCcHHHHHHHHHhcC-eEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 136 -AW-KDYQINIIDTPGH--VDFTVEVERALRVLD-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 136 -~~-~~~~i~liDTPG~--~~f~~~~~~al~~aD-~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.| ....+.||.+.|. -.|..+ ..| .-|+|+|+++|...--.-.- ... ..-++||||.|+.
T Consensus 91 ~~~~~~~Dll~iEs~GNL~~~~sp~------L~d~~~v~VidvteGe~~P~K~gP---~i~-~aDllVInK~DLa 155 (202)
T COG0378 91 VLDFPDLDLLFIESVGNLVCPFSPD------LGDHLRVVVIDVTEGEDIPRKGGP---GIF-KADLLVINKTDLA 155 (202)
T ss_pred hhcCCcCCEEEEecCcceecccCcc------hhhceEEEEEECCCCCCCcccCCC---cee-EeeEEEEehHHhH
Confidence 11 1257899999992 123222 345 88999999998532110000 000 0238999999984
No 342
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.9e-07 Score=86.06 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=81.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+.-++.++|--|+|||||++.|-. ++ ++. .--|.......+...+.+++-+|..||
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKd------------Dr------l~q------hvPTlHPTSE~l~Ig~m~ftt~DLGGH 74 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKD------------DR------LGQ------HVPTLHPTSEELSIGGMTFTTFDLGGH 74 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcc------------cc------ccc------cCCCcCCChHHheecCceEEEEccccH
Confidence 345789999999999999988721 11 000 011333333445567889999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchh-HHHHHHH----HHHcCCCEEEEEeCCCCCCCChH
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQ----MRRYEVPRLAFINKLDRMGADPW 210 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~q-t~~~~~~----~~~~~~p~iiviNK~D~~~~~~~ 210 (761)
..-..-+..++..+|++|++|||-+....+ .+..++. ..-.++|+++..||+|.+++-.+
T Consensus 75 ~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se 139 (193)
T KOG0077|consen 75 LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE 139 (193)
T ss_pred HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH
Confidence 887778888999999999999997643222 2222322 22368999999999999987643
No 343
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.50 E-value=2.6e-07 Score=96.89 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=55.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC---------------
Q 004316 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--------------- 139 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--------------- 139 (761)
|+|+|.+|+|||||+|+|......+ . ++ .++|++.....+.+.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~------~---------n~------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~ 59 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA------A---------NY------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKI 59 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc------c---------cc------cccchhceeeeEEeccchhhhHHHHhCCcee
Confidence 5899999999999999995432111 1 11 3455555544444433
Q ss_pred --eEEEEEeCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 004316 140 --YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 140 --~~i~liDTPG~~~-------f~~~~~~al~~aD~ailVvDa~~ 175 (761)
..+.++||||..+ +.......++.+|++++|||+..
T Consensus 60 ~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 60 VPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2599999999753 33355667899999999999864
No 344
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.48 E-value=5.1e-07 Score=87.07 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 155 VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 155 ~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
......++.+|++|+|+|+.++...+...+...+...++|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 344566778999999999988777676666666667789999999999984
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1e-06 Score=96.03 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=89.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..-|+++|++|+|||||+..|... ++.+.-.+..--||+.+. +.++++|+.+| .
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr------------------~tk~ti~~i~GPiTvvsg------K~RRiTflEcp--~ 122 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRR------------------FTKQTIDEIRGPITVVSG------KTRRITFLECP--S 122 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHH------------------HHHhhhhccCCceEEeec------ceeEEEEEeCh--H
Confidence 345789999999999999999632 111111222233454433 45799999999 3
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHHHHhCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRH 222 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~ 222 (761)
| ...++.....||.++|+||+.-|..-.|.+.+..+..+|+|. +-|++..|+... ...+..+.++|..
T Consensus 123 D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkh 191 (1077)
T COG5192 123 D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKH 191 (1077)
T ss_pred H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhh
Confidence 4 346677789999999999999999999999999999999997 568899998643 3455566665543
No 346
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.46 E-value=2.9e-06 Score=86.33 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.||.++|..|+||||++|.|+.....-.. . .....|.........+.+..+++|||||.-|
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-----~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d 61 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-----S--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFD 61 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-----c--------------ccCCcccccceeeeeecceEEEEEeCCCCCC
Confidence 47999999999999999999753321100 0 0123444455555678999999999999743
Q ss_pred c-------HHHHHHHH----HhcCeEEEEEeCCCCcchhHHHHHHHHHH-cCC----CEEEEEeCCCCCCC
Q 004316 153 F-------TVEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRR-YEV----PRLAFINKLDRMGA 207 (761)
Q Consensus 153 f-------~~~~~~al----~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~~----p~iiviNK~D~~~~ 207 (761)
- ..++..++ ...+++|+|+... .........++.... ++- -.+|+++..|....
T Consensus 62 ~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 62 SDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp TTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred CcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 1 23334433 3478999999988 666677777766543 332 36888888887544
No 347
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.41 E-value=1.5e-06 Score=74.25 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=63.6
Q ss_pred CcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccc
Q 004316 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCA 446 (761)
Q Consensus 372 p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~ 446 (761)
||.+.|..++... |++..|||.+|++++||+|++.+.+...+|+.|... ..++++|.|||.+++ .++ +++
T Consensus 1 plr~~I~~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v~ 75 (82)
T cd04089 1 PLRLPIIDKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDIS 75 (82)
T ss_pred CeEEEEEeEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHCC
Confidence 6778888877543 899999999999999999999999988888888632 368999999999985 454 577
Q ss_pred cCceeec
Q 004316 447 SGDTFTD 453 (761)
Q Consensus 447 ~GdtL~~ 453 (761)
.|+.|++
T Consensus 76 ~G~vl~~ 82 (82)
T cd04089 76 PGFVLCS 82 (82)
T ss_pred CCCEEeC
Confidence 8988864
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=87.56 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=83.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhh-hhcceeeeceEEEeecCeEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER-EKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~-~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
++...+++.|..|+|||+|+|.++....... .+. ..|-|.. ..+..-+..+.++|.|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~-------------------t~k~K~g~Tq~---in~f~v~~~~~~vDlP 191 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIAD-------------------TSKSKNGKTQA---INHFHVGKSWYEVDLP 191 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhh-------------------hcCCCCcccee---eeeeeccceEEEEecC
Confidence 5667899999999999999999964322110 000 2333332 2233346789999999
Q ss_pred CC----------CCcHHHHHHHH---HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 149 GH----------VDFTVEVERAL---RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~----------~~f~~~~~~al---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
|+ .|+...+..++ +..=-+.+++|+.-+++.-+...+.++.+.++|+.+|+||||+.
T Consensus 192 G~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 192 GYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred CcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 93 34555555555 23445788999999999999999999999999999999999974
No 349
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.33 E-value=4e-06 Score=86.67 Aligned_cols=114 Identities=22% Similarity=0.204 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
....|+++|..|+|||||+++|. .+.... .+.+-..+|. |..+.. + -.+..+.+.||-|+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT-~Aal~p-------~drLFATLDp---------T~h~a~--L-psg~~vlltDTvGF 236 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALT-KAALYP-------NDRLFATLDP---------TLHSAH--L-PSGNFVLLTDTVGF 236 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHH-hhhcCc-------cchhheeccc---------hhhhcc--C-CCCcEEEEeechhh
Confidence 34689999999999999999996 222221 1111111221 111111 1 13568899999997
Q ss_pred C-CcH-------HHHHHHHHhcCeEEEEEeCCCC-cchhHHHHHHHHHHcCCC-------EEEEEeCCCC
Q 004316 151 V-DFT-------VEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVP-------RLAFINKLDR 204 (761)
Q Consensus 151 ~-~f~-------~~~~~al~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~~p-------~iiviNK~D~ 204 (761)
. ++- ..+..-+..+|.+|.|+|.+++ ...|-..++.-+...++| ++=|=||+|.
T Consensus 237 isdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 237 ISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred hhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 4 221 2223334678999999999887 456667788888888886 2335566665
No 350
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.32 E-value=1.4e-06 Score=85.73 Aligned_cols=113 Identities=18% Similarity=0.086 Sum_probs=71.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcce-eeeceEEEe-ecCeEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT-IQSAATSCA-WKDYQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giT-i~~~~~~~~-~~~~~i~liDTPG 149 (761)
-.+++|+|...+|||.|+-.+. ++ ..+.+..+.+. -.+....+. -+...+.||||+|
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t--~~-------------------~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG 62 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT--TN-------------------AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAG 62 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec--cC-------------------cCcccccCeEEccceEEEEecCCCEEEEeeeecCC
Confidence 3578999999999999976552 11 11111111111 111222221 3346789999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHH-HHHHH--cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVD-RQMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~-~~~~~--~~~p~iiviNK~D~~ 205 (761)
+.+|.....-++..+|.++++++......... ..-| -.... -++|+|+|.+|.|+.
T Consensus 63 qedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 63 QEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 99998755567889999999888776544332 1122 22333 369999999999996
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.28 E-value=3.6e-06 Score=81.33 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCC
Q 004316 157 VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 157 ~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~iiviNK~D~~ 205 (761)
+.+++..+|.+++|+|+..+...+...+.+.+... ++|+|+|+||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 46789999999999999987666666666666543 48999999999984
No 352
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.25 E-value=3e-06 Score=92.13 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=67.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+.|++.++|.+|+||||+++.+.... ++-. .+ .-+|-..-..++.++-..+.+|||||.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad--------vevq-------pY------aFTTksL~vGH~dykYlrwQViDTPGI 225 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD--------DEVQ-------PY------AFTTKLLLVGHLDYKYLRWQVIDTPGI 225 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc--------cccC-------Cc------ccccchhhhhhhhhheeeeeecCCccc
Confidence 56899999999999999888773211 1101 00 011222223445566678999999998
Q ss_pred CCcH------HH--HHHHHHhc-CeEEEEEeCCCC----cchhHHHHHHHHH--HcCCCEEEEEeCCCCCC
Q 004316 151 VDFT------VE--VERALRVL-DGAILVLCSVGG----VQSQSITVDRQMR--RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~------~~--~~~al~~a-D~ailVvDa~~g----~~~qt~~~~~~~~--~~~~p~iiviNK~D~~~ 206 (761)
-|-- -+ .+.|+... -++++++|-++. +..|- .++.-.+ -.+.|.|+|+||+|..+
T Consensus 226 LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 226 LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccC
Confidence 5431 12 23444333 356778887642 22222 2222222 24889999999999854
No 353
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.24 E-value=1.8e-05 Score=90.12 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+++|.+|+||||++|.|+........ . ...++| ........+.+..+++|||||
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vs-----s--------------~~~~TT-r~~ei~~~idG~~L~VIDTPG 175 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTD-----A--------------FGMGTT-SVQEIEGLVQGVKIRVIDTPG 175 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcccccccc-----C--------------CCCCce-EEEEEEEEECCceEEEEECCC
Confidence 34468999999999999999999754322110 0 002222 233334456788999999999
Q ss_pred CCCcH------HHH----HHHHH--hcCeEEEEEeCCCC-cchhHHHHHHHHHH-cC----CCEEEEEeCCCCCC
Q 004316 150 HVDFT------VEV----ERALR--VLDGAILVLCSVGG-VQSQSITVDRQMRR-YE----VPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~------~~~----~~al~--~aD~ailVvDa~~g-~~~qt~~~~~~~~~-~~----~p~iiviNK~D~~~ 206 (761)
..+.. .++ ...+. .+|++|+|+..... ........++.+.. +| .-.|||++..|...
T Consensus 176 L~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 176 LKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 97642 222 22333 37888888765422 22233344444322 23 23699999999874
No 354
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.23 E-value=3.5e-05 Score=71.17 Aligned_cols=114 Identities=21% Similarity=0.228 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeece-EEEeec---CeEEEEEe
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA-TSCAWK---DYQINIID 146 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~-~~~~~~---~~~i~liD 146 (761)
+.-+|+++|.-++|||.+++.|++-...+... . --|+.-.. ..++.. .-.+.|.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e--------------~-------~pTiEDiY~~svet~rgarE~l~lyD 66 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE--------------L-------HPTIEDIYVASVETDRGAREQLRLYD 66 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc--------------c-------ccchhhheeEeeecCCChhheEEEee
Confidence 44579999999999999999999754332110 0 00111100 111111 24788999
Q ss_pred CCCCCCcHHHH-HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH-----HcCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEV-ERALRVLDGAILVLCSVGGVQSQSITVDRQMR-----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~-~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~~p~iiviNK~D~~ 205 (761)
|.|..+...+. ..++..+|+.+||.|..+....|-.+.+..-. +..+|+++..||.|+.
T Consensus 67 TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 67 TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 99999886666 44568899999999998876666665554332 2357999999999984
No 355
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.22 E-value=5.4e-05 Score=83.97 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=69.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChhh-hhhhcceeeeceEE------------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS------------ 134 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~------------ 134 (761)
+...|+++|..|+||||++..|.... |. +..-+..........++... ....++.+......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~--kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF--KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 35679999999999999999986432 21 11111111000111122111 11123333211100
Q ss_pred -EeecCeEEEEEeCCCCCCcHH----HHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 135 -CAWKDYQINIIDTPGHVDFTV----EVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 135 -~~~~~~~i~liDTPG~~~f~~----~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+...++.+.||||||...... ++....+ ..|-++||+|+..|-.. ....+...+.--+.-+++||+|..
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 011368999999999764433 3333222 36789999999877333 222222222222458899999974
No 356
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=6.1e-06 Score=89.97 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=76.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc---eeeeeeccCCcccccccChhhhhh------hcceeeeceEE-------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI---HEIHEVRGRDGVGAKMDSMDLERE------KGITIQSAATS------- 134 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i---~~~~~v~~~~~~~~~~d~~~~e~~------~giTi~~~~~~------- 134 (761)
+-.+++++|++|+||||++..|....-.. .+.+-+... . + .....|+- .|+.+......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D-~---~-R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD-S---Y-RIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc-c---c-cccHHHHHHHHHHHcCCceEecCCcccHHHHH
Confidence 45689999999999999999997542100 111111111 0 0 00011111 24433322211
Q ss_pred EeecCeEEEEEeCCCCC---CcHHHHHHHHHhcC---eEEEEEeCCCCcchhHHHHHHHHHHcCCC-------EEEEEeC
Q 004316 135 CAWKDYQINIIDTPGHV---DFTVEVERALRVLD---GAILVLCSVGGVQSQSITVDRQMRRYEVP-------RLAFINK 201 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~---~f~~~~~~al~~aD---~ailVvDa~~g~~~qt~~~~~~~~~~~~p-------~iiviNK 201 (761)
..+.++.+.||||||.. ++..+....+..++ -.+||++++.+....+..++......++| -=++++|
T Consensus 211 ~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 13457899999999986 34445555555444 45999999988766666666665554443 2577899
Q ss_pred CCCC
Q 004316 202 LDRM 205 (761)
Q Consensus 202 ~D~~ 205 (761)
+|-.
T Consensus 291 lDEt 294 (374)
T PRK14722 291 LDEA 294 (374)
T ss_pred cccC
Confidence 9974
No 357
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=9.8e-05 Score=79.04 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=55.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceee--eeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEI--HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~--~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+++|+|-||+|||||+|+|......+... ..+++..+...+.|-.-.+-.. + ..... .+--..+.|+|.+|.+
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~-~-~~c~~---k~~~~~ve~vDIAGLV 78 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAE-I-VKCPP---KIRPAPVEFVDIAGLV 78 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHH-h-cCCCC---cEEeeeeEEEEecccC
Confidence 68999999999999999997544322210 1111111112222211111000 0 00000 0112468899999985
Q ss_pred C-------cHHHHHHHHHhcCeEEEEEeCCC
Q 004316 152 D-------FTVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 152 ~-------f~~~~~~al~~aD~ailVvDa~~ 175 (761)
. +-.....-+|.+|+++.||||.+
T Consensus 79 ~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 79 KGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3 44556777899999999999973
No 358
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=74.38 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=78.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|.+..|||||.-..... . -| ..-++..|+..--...++.-....+.+||..|+.+
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~------------~------~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQN------------E------YD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE 81 (205)
T ss_pred EEEEeecccccCceeeehhhhcc------------h------hH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHh
Confidence 46999999999999997655311 1 01 11223345544444444433446788999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHHcCCC--EEEEEeCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRYEVP--RLAFINKLDR 204 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~~~p--~iiviNK~D~ 204 (761)
|.....-|-..+-++++++|-+....-.+..-| ++++..+.- .|++.+|.|+
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHh
Confidence 998888888888899999999876555555444 677776654 3778899996
No 359
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.17 E-value=9.3e-06 Score=69.46 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=61.6
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccc
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCA 446 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~ 446 (761)
|.+.|..++..+. |.+..|||.+|++++||++.+.+.+...+|+.|.. ...++++|.|||.+++ .++ ++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~----~~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQV----HGKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEE----CCcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 3566777776665 88999999999999999999999887788888863 2467899999999885 454 567
Q ss_pred cCceeec
Q 004316 447 SGDTFTD 453 (761)
Q Consensus 447 ~GdtL~~ 453 (761)
.||.|++
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 8887763
No 360
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.16 E-value=6.8e-06 Score=81.95 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=61.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|++||-|.+|||||+..+......... + .-+|.......+.+++..+.++|.||.+.-
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~------------y---------eFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAAS------------Y---------EFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhc------------e---------eeeEEEeecceEEecCceEEEecCcccccc
Confidence 5999999999999999888421110000 0 124667777888999999999999998653
Q ss_pred H-------HHHHHHHHhcCeEEEEEeCCCC
Q 004316 154 T-------VEVERALRVLDGAILVLCSVGG 176 (761)
Q Consensus 154 ~-------~~~~~al~~aD~ailVvDa~~g 176 (761)
. .++....+.||.++.|+||+..
T Consensus 123 AsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 123 ASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 2 2455667889999999999875
No 361
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.16 E-value=1.2e-05 Score=85.01 Aligned_cols=137 Identities=17% Similarity=0.234 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (761)
.||-++|..|.|||||+|.|+........ . ..+.......+..++......+.-++ ..+++|||||+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~-----~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED-----S------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS--------------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc-----c------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 48999999999999999999753221110 0 00000111223344444444444333 57899999997
Q ss_pred CCcH-------------HH-HHHHH-------------HhcCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 151 VDFT-------------VE-VERAL-------------RVLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 151 ~~f~-------------~~-~~~al-------------~~aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
.+.. .. ...++ ...|+||..++++ .|+...+...++.+.. .+++|.|+.|.
T Consensus 74 Gd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKa 152 (281)
T PF00735_consen 74 GDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKA 152 (281)
T ss_dssp SSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTG
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecc
Confidence 5421 11 11111 2358999999986 6788888877776654 48899999999
Q ss_pred CCCCCCh-HHHHHHHHHHhC
Q 004316 203 DRMGADP-WKVLDQARSKLR 221 (761)
Q Consensus 203 D~~~~~~-~~~~~~i~~~l~ 221 (761)
|....+. ...-+.+++.+.
T Consensus 153 D~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 153 DTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp GGS-HHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 9975331 223344444443
No 362
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.16 E-value=3.9e-05 Score=75.76 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=61.8
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~ 217 (761)
+.+.+.+||||+... .....++..+|.+++|+.+...........++.+...++|..+|+||+|.... ..+.+.+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~-~~~~~~~~~ 167 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE-IAEEIEDYC 167 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc-hHHHHHHHH
Confidence 578999999997653 35677889999999999998766666778888888889999999999997543 223334444
Q ss_pred HHhCC
Q 004316 218 SKLRH 222 (761)
Q Consensus 218 ~~l~~ 222 (761)
+.++.
T Consensus 168 ~~~~~ 172 (179)
T cd03110 168 EEEGI 172 (179)
T ss_pred HHcCC
Confidence 44443
No 363
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.15 E-value=3.6e-05 Score=81.72 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=93.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
-.||-++|..|.||||++|.|+... ..+.. ..-+....-..+++.+......+.-++ ..+++|||||
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~-l~~~~----------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTS-LVDET----------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhh-ccCCC----------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 3589999999999999999998651 11110 001111111335556666665565555 5688999999
Q ss_pred CCCcHH-------------H-HHHHH-------H-------hcCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEe
Q 004316 150 HVDFTV-------------E-VERAL-------R-------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFIN 200 (761)
Q Consensus 150 ~~~f~~-------------~-~~~al-------~-------~aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviN 200 (761)
..||.. + -..++ | ..++|+..+-++ +|+...+.+.++.+.. .+-+|.||-
T Consensus 92 fGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~ 170 (373)
T COG5019 92 FGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIA 170 (373)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeee
Confidence 977631 1 11122 1 257899988864 7888998888777654 466899999
Q ss_pred CCCCCCCC-hHHHHHHHHHHhCCceeeeeecCC
Q 004316 201 KLDRMGAD-PWKVLDQARSKLRHHCAAVQVPMG 232 (761)
Q Consensus 201 K~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~ 232 (761)
|.|....+ ....-+.|++.+.....++.-|+.
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd 203 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYNIPVFDPYD 203 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence 99997654 233444555555544444444543
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.13 E-value=6.3e-06 Score=80.85 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=44.1
Q ss_pred CCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~-~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
-|||. +...++..++..||.+++|+|+.++.......+.... .+.|+++|+||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 47773 5667888999999999999999887665544444433 468999999999984
No 365
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.12 E-value=1.6e-05 Score=68.71 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=59.4
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC----eEEecCcEEEEecCceeecceecCCCEEEE--ecc---
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG----KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--- 443 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--- 443 (761)
.+.|..++..+. |++..|||.+|++++||++++.+.+ ...+|+.|.. ...++++|.|||.+++ .++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEE----CCeECCEECCCCEEEEEEcCCCHH
Confidence 455666666565 9999999999999999999999873 4667877752 3567999999999985 555
Q ss_pred ccccCceeec
Q 004316 444 DCASGDTFTD 453 (761)
Q Consensus 444 ~~~~GdtL~~ 453 (761)
+++.|+.|++
T Consensus 78 ~i~~G~vl~~ 87 (87)
T cd03694 78 LLRKGMVLVS 87 (87)
T ss_pred HcCCccEEeC
Confidence 4678888763
No 366
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.4e-05 Score=83.74 Aligned_cols=151 Identities=21% Similarity=0.159 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeece-EEEe----e--------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA-TSCA----W-------- 137 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~-~~~~----~-------- 137 (761)
.-+-|.++|.-..||||+++.|+.+.-.-.+.|.-...+....+|.-..++.-.|.+..... ..|. +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 34568999999999999999998643221121211111222344444444444555443321 0110 0
Q ss_pred -----cC---eEEEEEeCCCC-----------CCcHHHHHHHHHhcCeEEEEEeCCC-CcchhHHHHHHHHHHcCCCEEE
Q 004316 138 -----KD---YQINIIDTPGH-----------VDFTVEVERALRVLDGAILVLCSVG-GVQSQSITVDRQMRRYEVPRLA 197 (761)
Q Consensus 138 -----~~---~~i~liDTPG~-----------~~f~~~~~~al~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ii 197 (761)
.+ ..+++|||||. .||.....-....||.+++++|+.. .+...+.+++.+++.+.-.+=|
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 00 47999999997 4788878888899999999999864 5778889999999988888999
Q ss_pred EEeCCCCCCCC-hHHHHHHHHHHhC
Q 004316 198 FINKLDRMGAD-PWKVLDQARSKLR 221 (761)
Q Consensus 198 viNK~D~~~~~-~~~~~~~i~~~l~ 221 (761)
|+||.|..... .-++...+...+|
T Consensus 217 VLNKADqVdtqqLmRVyGALmWslg 241 (532)
T KOG1954|consen 217 VLNKADQVDTQQLMRVYGALMWSLG 241 (532)
T ss_pred EeccccccCHHHHHHHHHHHHHhhh
Confidence 99999986432 2234444444444
No 367
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.10 E-value=1.8e-05 Score=67.26 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=59.8
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe--cc-ccccCc
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV-DCASGD 449 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~Gd 449 (761)
++.|..++.... |+.+.|||.+|++++||+|++.+.+...+|+.|.. +..+++.|.|||.+++. +- +++.|+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~----~~~~~~~a~aGd~v~l~l~~~~~i~~G~ 77 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIET----FDGELDEAGAGESVTLTLEDEIDVSRGD 77 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEE----CCcEeCEEcCCCEEEEEECCccccCCCC
Confidence 455666665443 67899999999999999999999998888888863 24578999999999863 22 577888
Q ss_pred eeec
Q 004316 450 TFTD 453 (761)
Q Consensus 450 tL~~ 453 (761)
.|+.
T Consensus 78 vl~~ 81 (81)
T cd03695 78 VIVA 81 (81)
T ss_pred EEeC
Confidence 8763
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.09 E-value=8.2e-06 Score=86.48 Aligned_cols=57 Identities=30% Similarity=0.369 Sum_probs=45.3
Q ss_pred CCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~-~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
-|||. ....++...+..+|++|+|+|+..+.......+.+.+ .+.|+|+|+||+|+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 38885 4567788999999999999999887666555555544 378999999999984
No 369
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.09 E-value=1.4e-05 Score=69.10 Aligned_cols=77 Identities=26% Similarity=0.203 Sum_probs=59.7
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCC--CeEEecCcEEEEecCceeecceecCCCEEEE--ecc---cc
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DC 445 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~ 445 (761)
++.|..++..+. |++..|||.+|+++.||.|.+.+. +...+|+.|.. ...++++|.|||.+++ .++ ++
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~----~~~~~~~a~~G~~v~l~l~~~~~~~v 77 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEM----FRKTLDEAEAGDNVGVLLRGVKREDV 77 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEE----CCcCCCEECCCCEEEEEECCCCHHHc
Confidence 455666665555 899999999999999999998764 45667777752 3457899999999985 455 57
Q ss_pred ccCceeecC
Q 004316 446 ASGDTFTDG 454 (761)
Q Consensus 446 ~~GdtL~~~ 454 (761)
..|+.|++.
T Consensus 78 ~rG~vl~~~ 86 (87)
T cd03697 78 ERGMVLAKP 86 (87)
T ss_pred CCccEEecC
Confidence 789998864
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=1.1e-05 Score=80.65 Aligned_cols=54 Identities=11% Similarity=-0.123 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+..|...+..+++.+|++++|+|+.+........++ ....++|+++|+||+|+.
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLL 74 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcC
Confidence 333678888899999999999999875433333332 223578999999999985
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=3e-05 Score=76.14 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=42.6
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHH------HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERAL------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al------~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.++.+.+|||||...+.......+ ...|.+++|+|+..+.... ...+......++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCC
Confidence 467899999999864433332222 2389999999996543222 333344344453 577889999753
No 372
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.00 E-value=2.8e-05 Score=74.33 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=41.1
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D 203 (761)
.++.+.||||||.. .....+++.||-+|+|+....+.....+. ...+..--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k----~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIK----AGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhh----hhHhhhcCEEEEeCCC
Confidence 36899999999964 34456899999999999887433222222 2223334599999998
No 373
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=2.7e-05 Score=75.00 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=33.1
Q ss_pred CeEEEEEeCCCCcchhHHHHH-HHHHHcCCCEEEEEeCCCCC
Q 004316 165 DGAILVLCSVGGVQSQSITVD-RQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 165 D~ailVvDa~~g~~~qt~~~~-~~~~~~~~p~iiviNK~D~~ 205 (761)
|.+|+|+|+.++.......+. ..+...++|+|+|+||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887666655555 45666789999999999984
No 374
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.97 E-value=1.5e-05 Score=78.85 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=86.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG 149 (761)
.-|+|.++|..|+|||++=..+...-.+- +-+..|-|++....+..+-| ..+++||+.|
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~--------------------D~~rlg~tidveHsh~RflGnl~LnlwDcGg 62 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIAR--------------------DTRRLGATIDVEHSHVRFLGNLVLNLWDCGG 62 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhh--------------------hhhccCCcceeeehhhhhhhhheeehhccCC
Confidence 35789999999999999865553211110 11224667777776665544 8899999999
Q ss_pred CCCcHHHHH-----HHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc------CCCEEEEEeCCCCCCCChHHHHHH
Q 004316 150 HVDFTVEVE-----RALRVLDGAILVLCSVGGVQSQSITVDRQMRRY------EVPRLAFINKLDRMGADPWKVLDQ 215 (761)
Q Consensus 150 ~~~f~~~~~-----~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~~p~iiviNK~D~~~~~~~~~~~~ 215 (761)
+..|..... ..++..++.+.|+|+.......+....+.|.+. ...+++.+.|+|+...+..+.+-+
T Consensus 63 qe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~ 139 (295)
T KOG3886|consen 63 QEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQ 139 (295)
T ss_pred cHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHH
Confidence 987766543 357889999999999876555555555544332 344788999999988776554433
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.96 E-value=0.00034 Score=78.33 Aligned_cols=131 Identities=20% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChhh-hhhhcceeeeceEE----------E-e
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS----------C-A 136 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~----------~-~ 136 (761)
.+.+.|.++|.+|+||||++..|...-..- .+..-+..........+.... -...|+.+...... + .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999999886432110 011111111000000000000 01123322211100 0 1
Q ss_pred ecCeEEEEEeCCCCCCcHHHH------HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCCCCC
Q 004316 137 WKDYQINIIDTPGHVDFTVEV------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLDRM 205 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~~~~------~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~-iiviNK~D~~ 205 (761)
..++.+.||||||...+.... ..++..+|.+++|+|+..|. ..+.++..+ .+++ -+++||+|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 134589999999976654332 23445689999999998862 223334433 3444 6788999964
No 376
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.5e-05 Score=85.01 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=85.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee-------eeeccCCccc--ccccChhhhhhhccee------------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI-------HEVRGRDGVG--AKMDSMDLEREKGITI------------ 128 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~-------~~v~~~~~~~--~~~d~~~~e~~~giTi------------ 128 (761)
+..-+|+|.|..++||||++|+||...-.-... -+|.+.++-. ..++-.+ |...-.|+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCc-ccccHHHHhHHHHhcCcccc
Confidence 345689999999999999999999765332221 1122111100 1111100 00000011
Q ss_pred --eeceEEEeecC-------eEEEEEeCCCC---CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-
Q 004316 129 --QSAATSCAWKD-------YQINIIDTPGH---VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR- 195 (761)
Q Consensus 129 --~~~~~~~~~~~-------~~i~liDTPG~---~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~- 195 (761)
......+-|++ ..+.+||.||. ..+...+......+|+.|+|+.|..-........+..+.+. +|.
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kpni 264 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNI 264 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcE
Confidence 11222333433 37899999997 45677777778899999999999776544444555555554 665
Q ss_pred EEEEeCCCCCCCChHHHHHHHHHH
Q 004316 196 LAFINKLDRMGADPWKVLDQARSK 219 (761)
Q Consensus 196 iiviNK~D~~~~~~~~~~~~i~~~ 219 (761)
+|+.||||..... .+..+.+++.
T Consensus 265 FIlnnkwDasase-~ec~e~V~~Q 287 (749)
T KOG0448|consen 265 FILNNKWDASASE-PECKEDVLKQ 287 (749)
T ss_pred EEEechhhhhccc-HHHHHHHHHH
Confidence 6666899986443 3344444333
No 377
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.93 E-value=0.00025 Score=69.61 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=62.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHH
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSK 219 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~ 219 (761)
.+.+|||||..+. ....++..+|.+|+|+++.......+...++.+...+.+ ..+++|++|.......+.++++.+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 7999999987553 467788999999999999877666666777777776665 4788999987654445556777777
Q ss_pred hCCcee
Q 004316 220 LRHHCA 225 (761)
Q Consensus 220 l~~~~~ 225 (761)
++....
T Consensus 142 ~~~~v~ 147 (179)
T cd02036 142 LGVPLL 147 (179)
T ss_pred hCCCEE
Confidence 776543
No 378
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.91 E-value=3e-05 Score=86.27 Aligned_cols=115 Identities=22% Similarity=0.186 Sum_probs=74.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
.+ +|+++|..|+|||||+-+|+...-.- . |... . .-|++-. .+.-......++||+-.
T Consensus 9 dV-RIvliGD~G~GKtSLImSL~~eef~~-~---VP~r------l--------~~i~IPa---dvtPe~vpt~ivD~ss~ 66 (625)
T KOG1707|consen 9 DV-RIVLIGDEGVGKTSLIMSLLEEEFVD-A---VPRR------L--------PRILIPA---DVTPENVPTSIVDTSSD 66 (625)
T ss_pred ce-EEEEECCCCccHHHHHHHHHhhhccc-c---cccc------C--------CccccCC---ccCcCcCceEEEecccc
Confidence 44 48999999999999999997543210 0 1100 0 1122221 11112345889999977
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCC-----cchhHHHHHHHHH--HcCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGG-----VQSQSITVDRQMR--RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g-----~~~qt~~~~~~~~--~~~~p~iiviNK~D~~~~ 207 (761)
.+-...+..-++.||++++|.++++. ++.-..-++++.. -.++|+|+|.||.|....
T Consensus 67 ~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 67 SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 76666677889999999999988763 3333333344432 257899999999998643
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.91 E-value=7.9e-05 Score=72.09 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCCCcHHHH--------HHHHHhcCeEEEEEeCCCCcchh--HHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEV--------ERALRVLDGAILVLCSVGGVQSQ--SITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~--------~~al~~aD~ailVvDa~~g~~~q--t~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
..+..+|||||..+-.... ..+.-.+|.++.|+|+....... ......|+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4678999999987533222 22334589999999987543221 12223344333 3889999996
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.91 E-value=1.1e-05 Score=88.60 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++++++|.+|+|||||+|+|+.......+...+. ..+|+|....... . +..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s---------------~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTS---------------PFPGTTLDLIEIP--L-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeec---------------CCCCeEeeEEEEE--e-CCCCEEEECCCCCC
Confidence 6899999999999999999986543211110111 1267777655433 3 23467999999864
Q ss_pred cHHHHHHHH-----------HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-ChHHHHHHHHHHh
Q 004316 153 FTVEVERAL-----------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-DPWKVLDQARSKL 220 (761)
Q Consensus 153 f~~~~~~al-----------~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l 220 (761)
.. .+...+ .......+.+|..+.........+......+..+.++++|-+.... +.++..+-+.+.+
T Consensus 217 ~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~ 295 (360)
T TIGR03597 217 SH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHL 295 (360)
T ss_pred hh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhc
Confidence 32 111111 2245566677765543322222222222234556777777766543 3444444455555
Q ss_pred CC
Q 004316 221 RH 222 (761)
Q Consensus 221 ~~ 222 (761)
+.
T Consensus 296 g~ 297 (360)
T TIGR03597 296 GN 297 (360)
T ss_pred CC
Confidence 43
No 381
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=1.5e-05 Score=76.50 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=80.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
.++.++++|..+.||||++++.+ +|...+.. . ..-|..+......-+.+..+++.|||.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y--~---------------at~Gv~~~pl~f~tn~g~irf~~wdtagq 69 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTY--P---------------ATLGVEVHPLLFDTNRGQIRFNVWDTAGQ 69 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceecc--c---------------CcceeEEeeeeeecccCcEEEEeeecccc
Confidence 47899999999999999999986 22222110 0 00122222222222223478999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH--H-HHcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ--M-RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~--~-~~~~~p~iiviNK~D~~ 205 (761)
+.|......+.-.+.+||+++|.+.-+..+....|.. + ...++|++++.||.|..
T Consensus 70 Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 70 EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 9998877777777889999999998777666555532 2 23478999999999974
No 382
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.90 E-value=2.7e-05 Score=83.00 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=44.5
Q ss_pred CCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~-~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
-|||. .-..++...+..+|++|+|+|+..+.......+..... +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 48885 34566788899999999999998877666555544432 78999999999984
No 383
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.88 E-value=1.9e-05 Score=76.22 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
-.+|+++|.+|+|||||+|+|+...... +. ...|.|....... . +..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~-----~~---------------~~~g~T~~~~~~~--~-~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK-----VA---------------PIPGETKVWQYIT--L-MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee-----eC---------------CCCCeeEeEEEEE--c-CCCEEEEECcCC
Confidence 3579999999999999999997432211 11 1145565443322 2 245899999994
No 384
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.86 E-value=0.0002 Score=75.53 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChh-hhhhhcceeeeceE-----E--------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT-----S-------- 134 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~~-----~-------- 134 (761)
.+.+.|+++|++|+||||++..|....... .+..-++.........+... --...|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999886432111 11111111000000000000 00122333211000 0
Q ss_pred EeecCeEEEEEeCCCCCCcHHHHH-------HHHH-----hcCeEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEEEEeC
Q 004316 135 CAWKDYQINIIDTPGHVDFTVEVE-------RALR-----VLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLAFINK 201 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~~f~~~~~-------~al~-----~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~~p~iiviNK 201 (761)
....++.+.||||||......... +... .+|..++|+|+..|- .+........ ..+ +.-+++||
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~-~~g~IlTK 226 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVG-LTGIILTK 226 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCC-CCEEEEEc
Confidence 012568999999999865433322 1222 289999999997642 2222222222 222 35888999
Q ss_pred CCCC
Q 004316 202 LDRM 205 (761)
Q Consensus 202 ~D~~ 205 (761)
+|..
T Consensus 227 lDe~ 230 (272)
T TIGR00064 227 LDGT 230 (272)
T ss_pred cCCC
Confidence 9974
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.86 E-value=7.5e-05 Score=70.71 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCC
Q 004316 155 VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 155 ~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~iiviNK~D~~ 205 (761)
.++.+++..+|++++|+|+..+...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5678899999999999999998887777777777766 89999999999984
No 386
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.84 E-value=2e-05 Score=78.64 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=40.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
.+++++|.+|+|||||+|+|+.......+. ... ......+|+|.......+.. .+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~---~~~---------~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL---KDL---------LTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc---ccc---------cccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 579999999999999999998643211100 000 01112257788776655432 5899999994
No 387
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.83 E-value=0.00015 Score=78.02 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCce-eeeeeccCCcc-cccccCh-hhhhhhcceeeeceE-------------E
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIH-EIHEVRGRDGV-GAKMDSM-DLEREKGITIQSAAT-------------S 134 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~-~~~~v~~~~~~-~~~~d~~-~~e~~~giTi~~~~~-------------~ 134 (761)
....|+++|++|+||||++..|........ +.. +-+.+.+ ....+.. .....+++.+..... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~-Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL-LAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE-EEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 456899999999999999999865322111 111 1111100 0000000 011223443322110 0
Q ss_pred EeecCeEEEEEeCCCCCCcH----HHHHHHHH--------hcCeEEEEEeCCCCcchhHHHHHHHHHHc--CC-CEEEEE
Q 004316 135 CAWKDYQINIIDTPGHVDFT----VEVERALR--------VLDGAILVLCSVGGVQSQSITVDRQMRRY--EV-PRLAFI 199 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~~f~----~~~~~al~--------~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~-p~iivi 199 (761)
....++.+.||||||..... .++....+ ..|..++|+||+.|-.... ++..+ .+ +.-+++
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f~~~~~~~giIl 266 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAFHEAVGLTGIIL 266 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHHHhhCCCCEEEE
Confidence 01256899999999985432 33333333 3577899999997632222 22222 12 347899
Q ss_pred eCCCCC
Q 004316 200 NKLDRM 205 (761)
Q Consensus 200 NK~D~~ 205 (761)
||+|..
T Consensus 267 TKlD~t 272 (318)
T PRK10416 267 TKLDGT 272 (318)
T ss_pred ECCCCC
Confidence 999953
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.82 E-value=1.2e-05 Score=77.15 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+.++++|++|+|||||+|+|+..... +.+.+... ..+-+.+|...... .+. ....+|||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~--~t~~is~~-----------~~rGkHTTt~~~l~--~l~-~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQ--KTGEISEK-----------TGRGKHTTTHRELF--PLP-DGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S-------------------------SEEEE--EET-TSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcch--hhhhhhcc-----------cCCCcccCCCeeEE--ecC-CCcEEEECCCCCc
Confidence 68999999999999999999753211 11111111 01123344444333 332 2468999999876
Q ss_pred cH
Q 004316 153 FT 154 (761)
Q Consensus 153 f~ 154 (761)
|.
T Consensus 100 ~~ 101 (161)
T PF03193_consen 100 FG 101 (161)
T ss_dssp --
T ss_pred cc
Confidence 53
No 389
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.81 E-value=0.00032 Score=69.90 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
-.||-++|.+|.|||||+|.|.. +...++. ..|...+-....+.+++....++-++ .++++|||||
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~-s~v~~~s-----------~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFK-SHVSDSS-----------SSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHH-HHHhhcc-----------CCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 36999999999999999999853 2222210 11111111112233444444444444 5789999999
Q ss_pred CCCcH-------------HH-HHHHHH--------------hcCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEe
Q 004316 150 HVDFT-------------VE-VERALR--------------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFIN 200 (761)
Q Consensus 150 ~~~f~-------------~~-~~~al~--------------~aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviN 200 (761)
+.|+. .+ ...+|+ ..++|++.+.++ +...+-+.+.++.+.+ -+.++-|+-
T Consensus 114 fGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIa 192 (336)
T KOG1547|consen 114 FGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIA 192 (336)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEe
Confidence 86642 11 122221 246788888875 3455556666655433 245688899
Q ss_pred CCCCCCCChH-HHHHHHHHHhCCce
Q 004316 201 KLDRMGADPW-KVLDQARSKLRHHC 224 (761)
Q Consensus 201 K~D~~~~~~~-~~~~~i~~~l~~~~ 224 (761)
|.|-...+.. +.-+.+++.|..++
T Consensus 193 kaDtlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 193 KADTLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred ecccccHHHHHHHHHHHHHHHHhcC
Confidence 9998765433 33445666665444
No 390
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.00034 Score=75.06 Aligned_cols=142 Identities=16% Similarity=0.269 Sum_probs=89.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 150 (761)
.++-++|..|.|||||+|.|+...-. +. . .......+..+..++......++-+| ..+++|||||.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~--------~~---~-~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLS--------GN---R-EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhcc--------CC---c-ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 58999999999999999999754111 00 0 00112222223445555555554444 56888999999
Q ss_pred CCcHH--------------HHHHHH-----------H--hcCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 151 VDFTV--------------EVERAL-----------R--VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 151 ~~f~~--------------~~~~al-----------~--~aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
.|+.. .-..++ . ..++|+..|..+ +|+.+.+...++.+. ..+.+|.||-|.
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKA 168 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeecc
Confidence 66421 112222 1 467899999875 678888887776654 367789999999
Q ss_pred CCCCCCh-HHHHHHHHHHhCCceeee
Q 004316 203 DRMGADP-WKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 203 D~~~~~~-~~~~~~i~~~l~~~~~~~ 227 (761)
|....+. ....+.+++.+....+.+
T Consensus 169 D~lT~~El~~~K~~I~~~i~~~nI~v 194 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRIRQDIEEHNIKV 194 (366)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcce
Confidence 9976553 344455666665554443
No 391
>PRK10867 signal recognition particle protein; Provisional
Probab=97.79 E-value=0.00079 Score=75.24 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=101.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH---c-CCceeeeeeccCCcccccccChh-hhhhhcceeeeceE------------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY---T-GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT------------ 133 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~---~-g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~~------------ 133 (761)
....|.++|++|+||||++..|... . |. +..-++.........+... .-...|+.+.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~--kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKK--KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCC--cEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3567899999999999988877642 1 22 1111111100000111110 01112333221110
Q ss_pred -EEeecCeEEEEEeCCCCCCcH----HHHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCCC
Q 004316 134 -SCAWKDYQINIIDTPGHVDFT----VEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLD 203 (761)
Q Consensus 134 -~~~~~~~~i~liDTPG~~~f~----~~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~-iiviNK~D 203 (761)
.....++.+.||||||..... .++.... -..|.+++|+|+..| | ...+++..+ .+++ -+++||+|
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCcc
Confidence 011245789999999965332 2222222 246888999998754 2 222333322 3443 67889999
Q ss_pred CCCCChHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEe-cC-CChhhHHHHHH--HHHHH
Q 004316 204 RMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT-GE-VPADMETFVAE--KRREL 279 (761)
Q Consensus 204 ~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~-~~-i~~~~~~~~~~--~~~~l 279 (761)
... .. -.+-.+...++.+...+. . |+.+.. .+ -|+.+...+.. -...|
T Consensus 252 ~~~-rg-G~alsi~~~~~~PI~fig----~----------------------Ge~v~DLe~f~p~~~~~~ilgmgD~~~l 303 (433)
T PRK10867 252 GDA-RG-GAALSIRAVTGKPIKFIG----T----------------------GEKLDDLEPFHPDRMASRILGMGDVLSL 303 (433)
T ss_pred Ccc-cc-cHHHHHHHHHCcCEEEEe----C----------------------CCccccCccCCHHHHHHHHhCCCChHHH
Confidence 632 11 124445555554432211 1 221110 00 13444444432 12244
Q ss_pred HHHHhcC-C----HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004316 280 IELVSEV-D----DKLGDMFLSDEPISSGDLEEAIRRATVAR 316 (761)
Q Consensus 280 ~e~~~~~-d----d~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (761)
+|.+.+. | ++++++...+ .++-+++.+.++....++
T Consensus 304 ~e~~~~~~~~~~~~~~~~~~~~g-~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 304 IEKAQEVVDEEKAEKLAKKLKKG-KFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred HHHHHHhhCHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 5544432 2 2345666654 688888888888766555
No 392
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.79 E-value=3.2e-05 Score=75.78 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=38.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
..+++++|.+|+|||||+|+|+...... +. ...|+|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~-----~~---------------~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACN-----VG---------------ATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccce-----ec---------------CCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3579999999999999999996432211 11 12577775444332 246899999994
No 393
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.76 E-value=3.8e-05 Score=74.00 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=39.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+++++|++|+|||||+|+|+...... +. ..+|+|.......+ +..++|+||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-----~~---------------~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-----VG---------------NVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-----cc---------------CCCCcccceEEEEe---cCCEEEEECCCC
Confidence 45779999999999999999997533211 11 12466666555433 246999999994
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.73 E-value=0.0013 Score=73.42 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=71.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH----cCCceeeeeeccCCcccccccChhh-hhhhcceeeeceE------------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY----TGRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAAT------------ 133 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~----~g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~------------ 133 (761)
+...|.++|++|+||||++-.|... .|. +..-++.........+.... -...|+.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~--kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK--KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC--eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3567899999999999998888643 121 11111111000000110000 0112222221110
Q ss_pred -EEeecCeEEEEEeCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004316 134 -SCAWKDYQINIIDTPGHVDFTVEVERA------LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (761)
Q Consensus 134 -~~~~~~~~i~liDTPG~~~f~~~~~~a------l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (761)
.+...++.+.||||||........... .-..|.+++|+|+..| .......+... ..+++ =+++||+|..
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGD 252 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCc
Confidence 011245789999999965433322221 2347899999999754 22222222222 22343 6679999953
Q ss_pred CCChHHHHHHHHHHhCCc
Q 004316 206 GADPWKVLDQARSKLRHH 223 (761)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~ 223 (761)
.. .-.+..+...++.+
T Consensus 253 ~~--~G~~lsi~~~~~~P 268 (428)
T TIGR00959 253 AR--GGAALSVRSVTGKP 268 (428)
T ss_pred cc--ccHHHHHHHHHCcC
Confidence 21 11244555555544
No 395
>PRK12289 GTPase RsgA; Reviewed
Probab=97.68 E-value=4.7e-05 Score=82.97 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=38.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.++|+|.+|+|||||+|+|+...... .+.+.+. ..+-+.+|..... +...+. ..||||||...|
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~--t~~vs~~-----------~~rGrHTT~~~~l--~~l~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR--VGKVSGK-----------LGRGRHTTRHVEL--FELPNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc--cccccCC-----------CCCCCCcCceeEE--EECCCC-cEEEeCCCcccc
Confidence 38999999999999999997432221 1222221 0112345555433 333221 279999998765
Q ss_pred H
Q 004316 154 T 154 (761)
Q Consensus 154 ~ 154 (761)
.
T Consensus 238 ~ 238 (352)
T PRK12289 238 D 238 (352)
T ss_pred c
Confidence 4
No 396
>PRK14974 cell division protein FtsY; Provisional
Probab=97.66 E-value=0.00026 Score=76.58 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChhh-hhhhcceeeeceE-------------EE
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAAT-------------SC 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~-------------~~ 135 (761)
+.+.|+++|.+|+||||++..|...-..- .+..-+..........+.... -..-|+.+..... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 45789999999999999888886432110 011101110000000011110 1112322211000 00
Q ss_pred eecCeEEEEEeCCCCCCc----HHHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCC-EEEEEeCCCCC
Q 004316 136 AWKDYQINIIDTPGHVDF----TVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY--EVP-RLAFINKLDRM 205 (761)
Q Consensus 136 ~~~~~~i~liDTPG~~~f----~~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p-~iiviNK~D~~ 205 (761)
...++.+.||||||.... ..++....+ ..|..++|+|+..|- ..+.++..+ .++ --+++||+|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 124578999999998643 333332222 468999999997752 223333332 133 48889999974
No 397
>PRK12289 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00016 Score=78.88 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHhcCeEEEEEeCCCCc-ch-hHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 160 ALRVLDGAILVLCSVGGV-QS-QSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 160 al~~aD~ailVvDa~~g~-~~-qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+++.+|.+++|+|+.+.. .. +..+.+..+...++|+++|+||+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 578899999999998643 22 22444555666799999999999985
No 398
>PRK12288 GTPase RsgA; Reviewed
Probab=97.64 E-value=6.1e-05 Score=82.08 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=39.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
.++|+|.+|+|||||+|+|+..... +.+.+... ..+-+.+|.......+..+ ..||||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~--~t~~is~~-----------~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI--LVGDVSDN-----------SGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce--eeccccCc-----------CCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4799999999999999999743222 22223221 0112344555444444322 359999999876
Q ss_pred H
Q 004316 154 T 154 (761)
Q Consensus 154 ~ 154 (761)
.
T Consensus 271 ~ 271 (347)
T PRK12288 271 G 271 (347)
T ss_pred c
Confidence 4
No 399
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.63 E-value=0.00013 Score=75.93 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHHHhcCeEEEEEeCCCCc-chhHHH-HHHHHHHcCCCEEEEEeCCCCC
Q 004316 158 ERALRVLDGAILVLCSVGGV-QSQSIT-VDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 158 ~~al~~aD~ailVvDa~~g~-~~qt~~-~~~~~~~~~~p~iiviNK~D~~ 205 (761)
...++.+|.+++|+|+.+.. ...... .+..+...++|+++|+||+|+.
T Consensus 31 r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 31 RPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred CcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 34688999999999998654 333333 3344556789999999999985
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.63 E-value=5.6e-05 Score=79.13 Aligned_cols=66 Identities=23% Similarity=0.224 Sum_probs=41.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+..+++|++|+|||||+|+|+-.. .-+.++++.. ..+-+.+|..+....+..++ .||||||...
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~--~~~t~eIS~~-----------~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPEL--NQKTGEISEK-----------LGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchh--hhhhhhhccc-----------CCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 467899999999999999996321 1111222221 11224556666665554344 4899999977
Q ss_pred cH
Q 004316 153 FT 154 (761)
Q Consensus 153 f~ 154 (761)
|.
T Consensus 229 ~~ 230 (301)
T COG1162 229 LG 230 (301)
T ss_pred cC
Confidence 64
No 401
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.62 E-value=7.9e-05 Score=70.58 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+++++|.+|+|||||+|+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999974
No 402
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.61 E-value=0.00039 Score=59.56 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred EEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC---eEEecCcEEEEecCceeecceecCCCEEEE--ecc-ccccC
Q 004316 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV-DCASG 448 (761)
Q Consensus 376 ~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-~~~~G 448 (761)
.|..++.... |.++.+||.+|++++|+.+.+.+.+ ..-+|..|.. ....+++|.+|+-|.| .++ +.+.|
T Consensus 4 ~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~----~~~~v~~a~~G~ecgi~l~~~~d~~~G 79 (84)
T cd03692 4 EVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKR----FKDDVKEVKKGYECGITLENFNDIKVG 79 (84)
T ss_pred EEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEE----cCcccCEECCCCEEEEEEeCcccCCCC
Confidence 3444443334 8899999999999999999999988 4456777763 3567999999999986 455 77888
Q ss_pred cee
Q 004316 449 DTF 451 (761)
Q Consensus 449 dtL 451 (761)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 876
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.61 E-value=0.00054 Score=68.65 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=67.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCce-eeeeeccCCcccccccChh-hhhhhcceeeeceE-------------EEee
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIH-EIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT-------------SCAW 137 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~-~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~~-------------~~~~ 137 (761)
+.|+++|+.|+||||.+-.|........ +.+-+..........+... .-+.-|+.+..... .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4589999999999999998875432111 1111111100000000000 01112333211110 0112
Q ss_pred cCeEEEEEeCCCCCCcHHH----HHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVE----VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~----~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+++.+.||||||......+ +...++ ..+-++||+|++.+... ...........++. =++++|+|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhcccCc-eEEEEeecCC
Confidence 4578999999998655433 322222 46789999999886432 22344444444554 4559999974
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00052 Score=77.46 Aligned_cols=133 Identities=21% Similarity=0.235 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC---ceeeeeeccCCcccccccChhh-hhhhcceeeeceEE-------EeecC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGR---IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKD 139 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~---i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~ 139 (761)
+-..|+|+|..|+||||++..|...... -.+..-+..........+.... -...|+.+...... -.+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4578999999999999999988753110 0111111110000000000000 01112222211100 01246
Q ss_pred eEEEEEeCCCCCCcHHHHHH---HHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVER---ALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~---al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+++.||||||.......... .+. .....++|+++..+..... .+++..... .+.-+++||+|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 89999999997543322111 111 1345688899876533222 333333332 4568999999974
No 405
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.59 E-value=0.00021 Score=77.69 Aligned_cols=82 Identities=20% Similarity=0.109 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC-CceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee--------------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG-RIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------------- 137 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g-~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 137 (761)
.+++|+|.||+|||||+++|..... .+... .-+|+......+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y---------------------pftTi~p~~g~v~v~d~r~d~L~~~~~~ 61 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP---------------------PFTTIEPNAGVVNPSDPRLDLLAIYIKP 61 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC---------------------CCCCCCCceeEEEechhHHHHHHHHhCC
Confidence 4689999999999999999954332 11110 11122222222211
Q ss_pred ---cCeEEEEEeCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 004316 138 ---KDYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 138 ---~~~~i~liDTPG~~~-------f~~~~~~al~~aD~ailVvDa~~ 175 (761)
....+.++|.||... +......-++.+|+.++|||+.+
T Consensus 62 ~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 62 EKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 124689999999854 44567788999999999999964
No 406
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.57 E-value=0.00012 Score=76.20 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=40.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+.++++|++|+|||||+|+|+..... +.+++... ..+.+.+|.......+ .+ -.||||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~--~t~~i~~~-----------~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQ--QVNDISSK-----------LGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhc--cccceecc-----------CCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 46899999999999999999854221 11222211 0112445665555444 22 37999999876
Q ss_pred c
Q 004316 153 F 153 (761)
Q Consensus 153 f 153 (761)
|
T Consensus 184 ~ 184 (245)
T TIGR00157 184 F 184 (245)
T ss_pred c
Confidence 5
No 407
>PRK13796 GTPase YqeH; Provisional
Probab=97.57 E-value=0.00011 Score=80.97 Aligned_cols=61 Identities=25% Similarity=0.344 Sum_probs=40.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+++.++|.+|+|||||+|+|+.......+...+ ...+|+|.......+. + ...|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~---------------s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITT---------------SRFPGTTLDKIEIPLD--D-GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEe---------------cCCCCccceeEEEEcC--C-CcEEEECCCcc
Confidence 589999999999999999998543111000001 1226888776554432 2 25899999975
No 408
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.51 E-value=0.00036 Score=71.60 Aligned_cols=91 Identities=18% Similarity=0.051 Sum_probs=55.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.++.-|+|+|+.++|||||+|+|+....... +... . ....+|+-+....... ..+..+.++||||
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~----~~~~---------~-~~~T~gi~~~~~~~~~-~~~~~v~~lDteG 69 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD----VMDT---------S-QQTTKGIWMWSVPFKL-GKEHAVLLLDTEG 69 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE----ecCC---------C-CCCccceEEEeccccC-CCcceEEEEecCC
Confidence 4677899999999999999999975421110 0000 0 0111344333222111 1457899999999
Q ss_pred CCCc------HHHHHHHHHh--cCeEEEEEeCCC
Q 004316 150 HVDF------TVEVERALRV--LDGAILVLCSVG 175 (761)
Q Consensus 150 ~~~f------~~~~~~al~~--aD~ailVvDa~~ 175 (761)
..+- ......++.. +|..|+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 70 TDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 8543 2233555555 999999888753
No 409
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00036 Score=75.96 Aligned_cols=132 Identities=13% Similarity=0.106 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChhh-hhhhcceeeeceEE---------Ee-ec
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS---------CA-WK 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~---------~~-~~ 138 (761)
+.+.|+++|+.|+||||++..|......- .+.+-++.........+.... -..-|+.+...... +. ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999996432100 011111111000000000000 00123332211100 00 12
Q ss_pred CeEEEEEeCCCCCCc----HHHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004316 139 DYQINIIDTPGHVDF----TVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (761)
Q Consensus 139 ~~~i~liDTPG~~~f----~~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (761)
++.+.||||||.... ..++...++ ..|-++||+|++.+- .....+++.... +++ =++++|+|-.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~--~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcC--CCCCEEEEEcccCC
Confidence 478999999998543 333444443 357789999986542 111233333222 343 6788999975
No 410
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00024 Score=77.01 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChhh-hhhhcceeeeceEE---------Ee-e
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS---------CA-W 137 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~-i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~---------~~-~ 137 (761)
.+.+.++++|+.|+||||++..|...... -.+.+-++.........+.... -..-|+.+...... +. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 35678999999999999999998753210 0111212211000000000000 01112222111000 00 1
Q ss_pred cCeEEEEEeCCCCCCcHH----HHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHc-CCCE-EEEEeCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTV----EVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPR-LAFINKLDRM 205 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~----~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~~p~-iiviNK~D~~ 205 (761)
.++.+.||||||...... ++...+. ..|..++|+++... .+. ....+..+ .+++ -++++|+|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 357999999999854333 3333332 23677888887432 222 22222222 3433 7779999974
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.47 E-value=0.0015 Score=70.30 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC------ceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe----------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGR------IHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---------- 136 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~------i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------- 136 (761)
+-..|.|--|+|||||+++|+.+..- +...|++.-.. . +.....-+.-..+...-+.|.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~--~---~~l~~~~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDG--G---ALLSDTGEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccC--C---CccccCCccEEEeCCceEEEeccchhHHHHH
Confidence 45678999999999999999976541 11122221110 0 000000111112222223333
Q ss_pred -----ecCeEEEEEeCCCCCCcHHHHHHH--------HHhcCeEEEEEeCCCCcchhH---HHHHHHHHHcCCCEEEEEe
Q 004316 137 -----WKDYQINIIDTPGHVDFTVEVERA--------LRVLDGAILVLCSVGGVQSQS---ITVDRQMRRYEVPRLAFIN 200 (761)
Q Consensus 137 -----~~~~~i~liDTPG~~~f~~~~~~a--------l~~aD~ailVvDa~~g~~~qt---~~~~~~~~~~~~p~iiviN 200 (761)
.++....+|-|-|..+=.+.+... .-..|++|-||||........ .....|+... =++++|
T Consensus 77 ~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlN 153 (323)
T COG0523 77 RLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLN 153 (323)
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEe
Confidence 123678899999987644333222 224588999999987654332 2333444333 399999
Q ss_pred CCCCCCCChHHHHHHHHHHhC
Q 004316 201 KLDRMGADPWKVLDQARSKLR 221 (761)
Q Consensus 201 K~D~~~~~~~~~~~~i~~~l~ 221 (761)
|.|+......+.++...+.++
T Consensus 154 K~Dlv~~~~l~~l~~~l~~ln 174 (323)
T COG0523 154 KTDLVDAEELEALEARLRKLN 174 (323)
T ss_pred cccCCCHHHHHHHHHHHHHhC
Confidence 999987653344444444444
No 412
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.46 E-value=0.00021 Score=70.02 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=38.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+++++|.+|+|||||+++|+..... . +.. ..|+|.......+. ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~--~---~~~---------------~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA--K---VGN---------------KPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce--e---ecC---------------CCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3468999999999999999999743211 0 111 13556555444332 56899999996
No 413
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.46 E-value=0.00017 Score=72.57 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+++++|-|.+|||||+..|. |..+. +... .+.|.........+++-++.|.|.||..+-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~---g~~s~---vasy---------------efttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLT---GTFSE---VAAY---------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeEEecCccchhhhhhhhc---CCCCc---cccc---------------cceeEEEecceEeccccceeeecCcchhcc
Confidence 69999999999999999884 32221 2222 345666666677788999999999998653
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHHc-----CCCEEEEEeCCCCCCCCh
Q 004316 154 -------TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY-----EVPRLAFINKLDRMGADP 209 (761)
Q Consensus 154 -------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~-----~~p~iiviNK~D~~~~~~ 209 (761)
-.++....|.|..+++|+|+..++.- ..++ +.+.-+ ..|.=+..-|-|.-+.++
T Consensus 120 akdgkgrg~qviavartcnli~~vld~~kp~~h--k~~ie~eleg~girlnk~pp~i~~kkKdkgGInl 186 (358)
T KOG1487|consen 120 AKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH--KKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINL 186 (358)
T ss_pred cccCCCCccEEEEEeecccEEEEEeeccCcccH--HHHHHHhhhcceeeccCCCCCccccccccCceee
Confidence 23456667889999999999886532 2222 223222 235545555666655443
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.45 E-value=0.00033 Score=74.64 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=34.7
Q ss_pred HHhcCeEEEEEeCCCCc-chhH-HHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 161 LRVLDGAILVLCSVGGV-QSQS-ITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 161 l~~aD~ailVvDa~~g~-~~qt-~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+..+|.+++|+|+.++. .... .+.+..+...++|+++|+||+|+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 57799999999998875 3332 334445667899999999999985
No 415
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.44 E-value=0.00027 Score=74.95 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
..+++++|.+|+|||||+|+|+...... +. ...|+|....... .. ..+.|+||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~-----~~---------------~~~g~T~~~~~~~--~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAK-----VG---------------NRPGVTKGQQWIK--LS-DGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccc-----cC---------------CCCCeecceEEEE--eC-CCEEEEECCCc
Confidence 4579999999999999999996321110 11 1146666554333 22 36899999998
No 416
>PRK00098 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.00035 Score=74.87 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHhcCeEEEEEeCCCCcchhH--HHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 160 ALRVLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 160 al~~aD~ailVvDa~~g~~~qt--~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.++.+|.+++|+|+.+...... .+.+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 4688999999999976532222 334445667899999999999984
No 417
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.43 E-value=0.0014 Score=70.87 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=61.7
Q ss_pred ceeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-----------chhHHHHHHHHHH----
Q 004316 126 ITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR---- 190 (761)
Q Consensus 126 iTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-----------~~qt~~~~~~~~~---- 190 (761)
.|.......+.+++..+.+||++|+..+...+...+..++++|+|||.++-. ...+...++.+..
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 3445555667788999999999999999999999999999999999987631 2233344444433
Q ss_pred cCCCEEEEEeCCCCC
Q 004316 191 YEVPRLAFINKLDRM 205 (761)
Q Consensus 191 ~~~p~iiviNK~D~~ 205 (761)
.++|+++++||.|+.
T Consensus 227 ~~~pill~~NK~D~f 241 (317)
T cd00066 227 ANTSIILFLNKKDLF 241 (317)
T ss_pred cCCCEEEEccChHHH
Confidence 478999999999973
No 418
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.37 E-value=0.0017 Score=61.33 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=47.1
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDR 204 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~iiviNK~D~ 204 (761)
+.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+... ..+..+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998654 4456789999999999998765444555666555433 3466799999974
No 419
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00098 Score=74.06 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC---ceeeeeeccCCcccccccChhh-hhhhcceeeeceEE-------EeecC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGR---IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKD 139 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~---i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~ 139 (761)
.-..|+++|+.|+||||++..|....-. ..+.+-+..........+.... -+..|+.+...... ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3467999999999999999988753210 0111111111000011111110 11123333222211 12356
Q ss_pred eEEEEEeCCCCCCcHHHHH---HHHHh---cCeEEEEEeCCCCcchhHHHHHHHHHHc-CCCE-EEEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVE---RALRV---LDGAILVLCSVGGVQSQSITVDRQMRRY-EVPR-LAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~---~al~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~-~~p~-iiviNK~D~~ 205 (761)
+.+.+|||+|......... ..+.. .+-.+||+|++.+- ++.. ..+..+ .+++ =++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~--~~~~~f~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLD--EVISAYQGHGIHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHH--HHHHHhcCCCCCEEEEEeeeCC
Confidence 7899999999865433322 22322 34578999998642 2222 122222 2333 6788999974
No 420
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.37 E-value=0.00026 Score=75.45 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=38.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+++++|.+|+|||||+|+|+...... +.+ ..|+|...... .+ +..+.|+||||..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~-----~~~---------------~~g~T~~~~~~--~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAK-----TGN---------------RPGVTKAQQWI--KL-GKGLELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccc-----cCC---------------CCCeEEEEEEE--Ee-CCcEEEEECCCcC
Confidence 4579999999999999999996432110 111 15677665432 22 3468999999984
No 421
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.37 E-value=0.00044 Score=71.96 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=60.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC-
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 151 (761)
.++-|+|-||+|||||+|++........+...+- .+.|+|+..+...--.....+.++||||..
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG---------------~~pGVT~~V~~~iri~~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVG---------------AEPGVTRRVSERIRISHRPPVYLIDTPGILV 208 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceecc---------------CCCCceeeehhheEeccCCceEEecCCCcCC
Confidence 4899999999999999999865444333322222 237899888775444556679999999972
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~ 188 (761)
.=....+.+++.| .+.+|-|.--|...+.-..+..+
T Consensus 209 P~I~~~e~~lKLA-L~g~Vkd~~V~~~~~adylL~~l 244 (335)
T KOG2485|consen 209 PSIVDVEDGLKLA-LCGLVKDHLVGEETIADYLLYLL 244 (335)
T ss_pred CCCCCHHHhhhhh-hcccccccccCHHHHHHHHHHHH
Confidence 2222334444433 33344554444333333343333
No 422
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.37 E-value=0.0025 Score=69.57 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=62.7
Q ss_pred cceeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-----------cchhHHHHHHHHHH---
Q 004316 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-----------VQSQSITVDRQMRR--- 190 (761)
Q Consensus 125 giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-----------~~~qt~~~~~~~~~--- 190 (761)
..|.......+.+++..+.+||..|+..+...|...+..++++|+|+|.++- -...+...++.+..
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3444455566778899999999999999999999999999999999999863 12334445554433
Q ss_pred -cCCCEEEEEeCCCCC
Q 004316 191 -YEVPRLAFINKLDRM 205 (761)
Q Consensus 191 -~~~p~iiviNK~D~~ 205 (761)
.++|+++++||.|+.
T Consensus 249 ~~~~piil~~NK~D~~ 264 (342)
T smart00275 249 FANTSIILFLNKIDLF 264 (342)
T ss_pred ccCCcEEEEEecHHhH
Confidence 478999999999973
No 423
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.34 E-value=3.2e-05 Score=73.91 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC---eEEEEEe
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQINIID 146 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liD 146 (761)
+.+-.+-|+|.-++|||+++.+.+.+.-...- ...|.++.+...+.|++ .++.|||
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~y---------------------RAtIgvdfalkVl~wdd~t~vRlqLwd 81 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHY---------------------RATIGVDFALKVLQWDDKTIVRLQLWD 81 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHH---------------------HHHHhHHHHHHHhccChHHHHHHHHhc
Confidence 45667889999999999999998754321100 01122222223345555 4678999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH------cCC--CEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YEV--PRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~--p~iiviNK~D~~ 205 (761)
..|+.+|.....-+++.+.++.+|+|.+......-..-|.+-.. .+. |+++..||+|..
T Consensus 82 IagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 82 IAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred chhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 99999998888888899999999999988766665555655432 233 458888999985
No 424
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.33 E-value=0.00031 Score=74.86 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=40.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+.++++|++|+|||||+|.|+...... .+.+.. ...+.+++|.......+... ..++||||..+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~--~g~v~~-----------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA--TGEISE-----------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc--ccceec-----------cCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 579999999999999999997432211 111111 00112345555544333322 36999999987
Q ss_pred cH
Q 004316 153 FT 154 (761)
Q Consensus 153 f~ 154 (761)
|.
T Consensus 226 ~~ 227 (287)
T cd01854 226 FG 227 (287)
T ss_pred cC
Confidence 64
No 425
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.33 E-value=0.00079 Score=74.10 Aligned_cols=53 Identities=19% Similarity=-0.003 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+|...+....+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 46777666666889999999999775543333333332 378999999999985
No 426
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.33 E-value=0.00026 Score=76.52 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=39.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
.++.++|-+|+|||||+|+|+....+. +.. .+|+|.......+. ..+.|+||||..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~-----~s~---------------~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAK-----TSN---------------RPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhccccee-----eCC---------------CCceecceEEEEcC---CCeEEecCCCcC
Confidence 459999999999999999997544321 111 14777665554443 348999999974
No 427
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.32 E-value=0.00092 Score=67.04 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=49.5
Q ss_pred eEEEEEeC-CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC-CCEEEEEeCCCCC
Q 004316 140 YQINIIDT-PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDT-PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~-~p~iiviNK~D~~ 205 (761)
+.+.++|| +|.+.|..- ..+.+|.+|+|+|++..-....+++-+++.+.+ .++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 67888888 666665533 356799999999998765666778888888999 7789999999963
No 428
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.017 Score=63.26 Aligned_cols=214 Identities=20% Similarity=0.206 Sum_probs=108.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChhh-hhhhcceeeec-------------eEEE
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSA-------------ATSC 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~-i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~-------------~~~~ 135 (761)
..-.|-++|--|+||||.+..|..+-.. -.+..-|..........+.... -.+-|+.+... ...+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999988643211 1111111111000000010000 00112222111 0111
Q ss_pred eecCeEEEEEeCCCCCC----cHHHH--HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCC
Q 004316 136 AWKDYQINIIDTPGHVD----FTVEV--ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD 208 (761)
Q Consensus 136 ~~~~~~i~liDTPG~~~----f~~~~--~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~ 208 (761)
...++.+.|+||+|--. +..|+ ....-..|=+++|+||.-| |.......+....+++ =++++|+|-...-
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGDARG 255 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCCCcc
Confidence 22357999999999533 33333 2233456899999999876 3333333444456676 7889999974211
Q ss_pred hHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecC--CChhhHHHHHH--HHHHHHHHHh
Q 004316 209 PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGE--VPADMETFVAE--KRRELIELVS 284 (761)
Q Consensus 209 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~--i~~~~~~~~~~--~~~~l~e~~~ 284 (761)
-..-+++...+.+.. |.|+ |+....-+ .|+.+...++- -...|+|.+.
T Consensus 256 --GaALS~~~~tg~PIk-----------FiGt---------------GEki~dLE~F~P~R~asRILGMGDv~sLvEk~~ 307 (451)
T COG0541 256 --GAALSARAITGKPIK-----------FIGT---------------GEKIDDLEPFHPDRFASRILGMGDVLSLIEKAE 307 (451)
T ss_pred --hHHHhhHHHHCCCeE-----------EEec---------------CCCcccCCCcChHHHHHHhcCcccHHHHHHHHH
Confidence 112234444444322 1111 22221111 25666666554 2345566555
Q ss_pred cCC-----HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004316 285 EVD-----DKLGDMFLSDEPISSGDLEEAIRRATVAR 316 (761)
Q Consensus 285 ~~d-----d~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (761)
+.. +++.+++..+. ++-+++.+.++....++
T Consensus 308 ~~~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 308 EVVDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKMG 343 (451)
T ss_pred HhhhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccC
Confidence 433 34556666665 88888888887655443
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0014 Score=73.63 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC---CceeeeeeccCCcccccccChhh-hhhhcceeeeceEEE-------eecCe
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG---RIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATSC-------AWKDY 140 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g---~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~~-------~~~~~ 140 (761)
-+.++++|+.|+||||++..|..... .-.+.+-++.........+.... -...|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999998864321 00111111111000000000000 011222221111100 12358
Q ss_pred EEEEEeCCCCCCcH----HHHHHHHH---hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 141 QINIIDTPGHVDFT----VEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 141 ~i~liDTPG~~~f~----~~~~~al~---~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+.||||||...+. .++...+. ..+-+.+|++++.+. .....++......++ -=++++|+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 99999999986553 23333334 223668899987642 222333444333332 25889999974
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0013 Score=72.57 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC--ceeeeeeccCCcccccccChhhh-hhhcceeeece------EEEeecCeEEE
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGR--IHEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAA------TSCAWKDYQIN 143 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~--i~~~~~v~~~~~~~~~~d~~~~e-~~~giTi~~~~------~~~~~~~~~i~ 143 (761)
+.++++|++|+||||++..|...... -.+..-++.........+..... ...|+...... ..+.-.++++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 45899999999999999999753210 00111111110000000000100 01122221110 00011467899
Q ss_pred EEeCCCCCCcHH----HHHHHHHh-----cCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCC
Q 004316 144 IIDTPGHVDFTV----EVERALRV-----LDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (761)
Q Consensus 144 liDTPG~~~f~~----~~~~al~~-----aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~ 205 (761)
||||||...... ++...++. ..-.+||+||+.+.. +...+.+.-. .++ -=++++|+|-.
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~--~~~~~glIlTKLDEt 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYE--SLNYRRILLTKLDEA 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhc--CCCCCEEEEEcccCC
Confidence 999999854322 23333332 235789999987632 2222222222 233 36788999974
No 431
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.21 E-value=0.002 Score=66.31 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=47.3
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH------HcCCCEEEEEeCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR------RYEVPRLAFINKLD 203 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~------~~~~p~iiviNK~D 203 (761)
+++.+.||||||+.. ..+..++..+|.+|+.+.+..-....+...+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999875 55677899999999999886544434444443322 24678889999987
No 432
>PRK00098 GTPase RsgA; Reviewed
Probab=97.16 E-value=0.00062 Score=73.00 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+.++++|++|+|||||+|+|+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999974
No 433
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.16 E-value=0.0022 Score=57.05 Aligned_cols=82 Identities=21% Similarity=0.137 Sum_probs=51.7
Q ss_pred EEEEe-CCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 75 IGISA-HIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 75 I~iiG-~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
|++.| ..|+||||+.-.|......- +. .....|..+. +.+.+||+|+..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-------~~--~vl~~d~d~~-------------------~d~viiD~p~~~~- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-------GK--RVLLIDLDPQ-------------------YDYIIIDTPPSLG- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-------CC--cEEEEeCCCC-------------------CCEEEEeCcCCCC-
Confidence 45666 67999999998886432110 00 0111111111 6899999999765
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR 186 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~ 186 (761)
.....++..+|.+++++++...-.......++
T Consensus 53 -~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 53 -LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred -HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 34558899999999999987544444444443
No 434
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.15 E-value=0.0025 Score=68.80 Aligned_cols=132 Identities=18% Similarity=0.244 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhh--hhcceeeeceEEEeec----------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER--EKGITIQSAATSCAWK---------- 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~--~~giTi~~~~~~~~~~---------- 138 (761)
+++-..|.|--|+|||||+++|+....- .+..-+.+..+ ..-.|..-.+. ..-.+.......+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~-~riaVi~NEfG-~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l 80 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHG-YKIAVIENEFG-EVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccC-CcccccccCcC-CccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHH
Confidence 5677889999999999999999965321 01110111100 00011100000 0011122222222211
Q ss_pred ---------CeEEEEEeCCCCCCcHHHHHHHHH--------hcCeEEEEEeCCCCcchhH--HHHHHHHHHcCCCEEEEE
Q 004316 139 ---------DYQINIIDTPGHVDFTVEVERALR--------VLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFI 199 (761)
Q Consensus 139 ---------~~~i~liDTPG~~~f~~~~~~al~--------~aD~ailVvDa~~g~~~qt--~~~~~~~~~~~~p~iivi 199 (761)
.....+|.|-|..+-...+...+. ..|++|.|||+........ .....|+.. --+|++
T Consensus 81 ~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~Ivl 157 (318)
T PRK11537 81 LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILL 157 (318)
T ss_pred HHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEE
Confidence 246789999999875443322211 2489999999986532211 111223322 349999
Q ss_pred eCCCCCCC
Q 004316 200 NKLDRMGA 207 (761)
Q Consensus 200 NK~D~~~~ 207 (761)
||+|+...
T Consensus 158 nK~Dl~~~ 165 (318)
T PRK11537 158 TKTDVAGE 165 (318)
T ss_pred eccccCCH
Confidence 99999763
No 435
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.12 E-value=0.0013 Score=64.36 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=51.9
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDR 204 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~ 204 (761)
.++.+.++|||+... ......+ ..+|.+|+|+.+...-...+...++.+.+.+.++ -+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 578999999999753 3333343 6899999999988777777888899999999987 577899885
No 436
>PRK01889 GTPase RsgA; Reviewed
Probab=97.12 E-value=0.0023 Score=70.30 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=37.3
Q ss_pred HHhcCeEEEEEeCCCCcch-hHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 161 LRVLDGAILVLCSVGGVQS-QSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 161 l~~aD~ailVvDa~~g~~~-qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+..+|.+++|+++...... ...+.+..+...++|.++|+||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999866665 44567777888999999999999985
No 437
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.12 E-value=0.0038 Score=61.34 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCCCcH------HHHHHHHHhcC---eEEEEEeCCCCcc-----hhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFT------VEVERALRVLD---GAILVLCSVGGVQ-----SQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~------~~~~~al~~aD---~ailVvDa~~g~~-----~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
-.+.++|+||++++. ....+.+..-+ ++++++|+.--+. ......+..+....+|.|=|+.|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 468899999987653 44455555533 4677777642211 122333445566799999999999986
Q ss_pred C
Q 004316 206 G 206 (761)
Q Consensus 206 ~ 206 (761)
.
T Consensus 178 k 178 (273)
T KOG1534|consen 178 K 178 (273)
T ss_pred h
Confidence 4
No 438
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.08 E-value=0.0059 Score=66.64 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+++-..|.|-.|+|||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4566789999999999999999964
No 439
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.08 E-value=0.0058 Score=62.07 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=52.8
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHH--HHhcCeEEEEEeCCCCcchhHHHHHHHHHHc----CCCE-EEEEeCCCCCCCCh
Q 004316 137 WKDYQINIIDTPGHVDFTVEVERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRY----EVPR-LAFINKLDRMGADP 209 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~~~~~~a--l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~----~~p~-iiviNK~D~~~~~~ 209 (761)
.+.|.+.||||||....... ... ++.||.+|+|++...--......+++.+... +.+. .+++||+|.. ..
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~ 190 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RE 190 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cH
Confidence 34689999999986532111 112 3489999999987543222233444444433 4444 5899999964 33
Q ss_pred HHHHHHHHHHhCCceee
Q 004316 210 WKVLDQARSKLRHHCAA 226 (761)
Q Consensus 210 ~~~~~~i~~~l~~~~~~ 226 (761)
.+.++++.+.++.....
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 45677777777765443
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0029 Score=69.89 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=68.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc-----eeeeeeccCCcccccccChhhhhh-hcceeeeceEE-------Eee
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-----HEIHEVRGRDGVGAKMDSMDLERE-KGITIQSAATS-------CAW 137 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-----~~~~~v~~~~~~~~~~d~~~~e~~-~giTi~~~~~~-------~~~ 137 (761)
..+.|+++|+.|+||||.+..|....... .+.+-+..........+....-.+ -|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 34689999999999999999887432110 111111111000000000110000 13322111110 023
Q ss_pred cCeEEEEEeCCCCCCcH----HHHHHHHHhc--C-eEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 138 KDYQINIIDTPGHVDFT----VEVERALRVL--D-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~----~~~~~al~~a--D-~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.++.+.||||||..... .++...+..+ + -.+||+||+.+.... ..++......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 56899999999975322 3444444433 3 588999999873222 23333332222 336788999974
No 441
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.04 E-value=0.00095 Score=64.21 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
...+++++|.+|+|||||+++|+.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999963
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0031 Score=71.22 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChhh-hhhhcceeeeceEE-------EeecC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKD 139 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~----g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~ 139 (761)
-..++++|+.|+||||++..|.... |. .+.+-+..........+.... -...|+.+...... ....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 3579999999999999999997432 21 122222211100000011110 11223333221111 23346
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHH-hcC-----eEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALR-VLD-----GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~-~aD-----~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.+.+|||+|.......+...+. ..+ -.+||+|++.+.. ....+++.....+ ..-+++||+|-.
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCC-CCEEEEeCCCCc
Confidence 78999999996433332222222 122 2689999986531 1112222222222 235678999964
No 443
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.01 E-value=0.0041 Score=55.75 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=46.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC----EEEEEeC
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP----RLAFINK 201 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p----~iiviNK 201 (761)
.+.+||||+.... ....++..+|.+++|+++...-...+...++.+.+.+.+ +.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997653 456788999999999999877666777777777766653 4678885
No 444
>PRK12288 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.0036 Score=68.30 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHhcCeEEEEEeCCCCcchhHHH-HHHHHHHcCCCEEEEEeCCCCC
Q 004316 161 LRVLDGAILVLCSVGGVQSQSIT-VDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 161 l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~~~~p~iiviNK~D~~ 205 (761)
...+|.+++|.+........... .+..+...++|+++|+||+|+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~ 163 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLL 163 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 35689999999876554443332 2334566789999999999985
No 445
>PHA02518 ParA-like protein; Provisional
Probab=96.99 E-value=0.009 Score=60.31 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=43.3
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH-----cCCCE-EEEEeCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPR-LAFINKLDR 204 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~-iiviNK~D~ 204 (761)
..+.+.||||||..+ ..+..++..+|.+|+++.+..-........++.+.. .+.|. .++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 357999999999743 557889999999999999875433333333333322 24555 456677654
No 446
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.99 E-value=0.0023 Score=63.17 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCCCCcHHHH-----HHHHHhcCeEEEEEeCCCCcchh-HHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEV-----ERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRRYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~-----~~al~~aD~ailVvDa~~g~~~q-t~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (761)
+....||-|.|..+....+ ....-..+.+|.|||+..-.... ....+ ......--++++||+|+...+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~--~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELL--REQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHH--HHHHCT-SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhh--hhcchhcCEEEEeccccCChh
Confidence 3578999999976544331 11223468999999996531111 11111 112233349999999996544
No 447
>PRK13796 GTPase YqeH; Provisional
Probab=96.98 E-value=0.0036 Score=69.03 Aligned_cols=51 Identities=22% Similarity=0.051 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHhcC-eEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLD-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD-~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+|.. +...+...| .+++|||+.+........+.+.. .+.|+++|+||+|+.
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl 109 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLL 109 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhC
Confidence 4443 566666666 88999999875433333222222 378999999999985
No 448
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.97 E-value=0.0098 Score=61.69 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH--cCCCEEEEEeCCCCCCCChHHHHHHH
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRMGADPWKVLDQA 216 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~--~~~p~iiviNK~D~~~~~~~~~~~~i 216 (761)
+.+.+||||+.. ......++..+|.+|+++.+..--.......+. .... ...+.-+|+|++|.......+..+.+
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 489999999953 456778899999999999885322122221222 2221 23456789999997543344455666
Q ss_pred HHHhCCc
Q 004316 217 RSKLRHH 223 (761)
Q Consensus 217 ~~~l~~~ 223 (761)
.+.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 6666654
No 449
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.93 E-value=0.005 Score=68.55 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=26.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCc
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRI 99 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i 99 (761)
...+++|+|+|++++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999776654
No 450
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.90 E-value=0.0069 Score=66.87 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=83.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCcee-eee----------eccCC-cccccccC------hhh----------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHE-IHE----------VRGRD-GVGAKMDS------MDL---------- 120 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~-~~~----------v~~~~-~~~~~~d~------~~~---------- 120 (761)
.+++++|+++|.-.+|||+.++.+... ....+ .|+ ...|. .+..+.|+ ..+
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh-ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 367899999999999999999987532 22111 000 11111 01111111 111
Q ss_pred ------hhhhcceeeeceEEEeecC---eEEEEEeCCCCCC-------------cHHHHHHHHHhcCeEEEEEe-CC-CC
Q 004316 121 ------EREKGITIQSAATSCAWKD---YQINIIDTPGHVD-------------FTVEVERALRVLDGAILVLC-SV-GG 176 (761)
Q Consensus 121 ------e~~~giTi~~~~~~~~~~~---~~i~liDTPG~~~-------------f~~~~~~al~~aD~ailVvD-a~-~g 176 (761)
....|.|+..-.+.+..+| .+..|+|.||.+. .......++....++|++|- +. +.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 1123888888888877776 5789999999732 23334556677888888773 21 11
Q ss_pred cchhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 177 VQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 177 ~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
.....-.+..++.-.|...|+|++|+|+...
T Consensus 464 ERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 1112223445666678889999999999743
No 451
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.89 E-value=0.0026 Score=66.90 Aligned_cols=83 Identities=18% Similarity=0.148 Sum_probs=54.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee--------------
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------------- 137 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 137 (761)
-..++|+|-+|+|||||+|+|....-.. . .-+=+||+.....+..
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~--------~-------------NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~ 78 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGA--------A-------------NFPFCTIDPNEARVEVPDSRFDLLCPIYGP 78 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCc--------c-------------CCCcceeccccceeecCchHHHHHHHhcCC
Confidence 3479999999999999999995322110 0 0022233333332211
Q ss_pred c---CeEEEEEeCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 004316 138 K---DYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 138 ~---~~~i~liDTPG~~~-------f~~~~~~al~~aD~ailVvDa~~ 175 (761)
+ .-.+++.|++|... +-.....-+|.+|+++-||+|.+
T Consensus 79 ~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 79 KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 14699999999743 33445667899999999999975
No 452
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.89 E-value=0.0051 Score=66.90 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=88.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeece--------EEEee---cCeEE
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA--------TSCAW---KDYQI 142 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~--------~~~~~---~~~~i 142 (761)
=|+++|++-.||||++.++....- +.. +.+.....+..|..|+... |-|+-... ..+.. -..++
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~V-lPn---I~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLV-LPN---IEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhc-CCC---CCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEEE
Confidence 489999999999999999975432 222 1111111334444443322 33332211 11112 13688
Q ss_pred EEEeCCCC-------------------------CCcHHHHHHHHHh------cCeEEEEEeCCCCc------chhHHHHH
Q 004316 143 NIIDTPGH-------------------------VDFTVEVERALRV------LDGAILVLCSVGGV------QSQSITVD 185 (761)
Q Consensus 143 ~liDTPG~-------------------------~~f~~~~~~al~~------aD~ailVvDa~~g~------~~qt~~~~ 185 (761)
-|||+-|+ .-|.....-+-+. .=|+|+--|++-+. ....+++.
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 89999886 1133333222221 12455555654332 23456788
Q ss_pred HHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 186 RQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 186 ~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
..++..++|+++++|-.+-...+-.+..+++.++++.++.++.
T Consensus 174 ~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvn 216 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVN 216 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence 8999999999999998875444455778889999998877643
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0035 Score=74.11 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=62.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChhhh-hhhcceeeeceEE-------EeecCe
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAATS-------CAWKDY 140 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~----g~i~~~~~v~~~~~~~~~~d~~~~e-~~~giTi~~~~~~-------~~~~~~ 140 (761)
+-|+++|+.|+||||++..|.... |. .+..-+..........+....- ...|+.+...... -...++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 568999999999999999997422 11 0111111110000000101000 1123322211100 023467
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCcchhHH-HHHHHHHHc-CCC-EEEEEeCCCCC
Q 004316 141 QINIIDTPGHVDFTVEVERALR------VLDGAILVLCSVGGVQSQSI-TVDRQMRRY-EVP-RLAFINKLDRM 205 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~------~aD~ailVvDa~~g~~~qt~-~~~~~~~~~-~~p-~iiviNK~D~~ 205 (761)
.+.||||||.......+...+. ..+-.+||+|++.+ .++. ++.+..... ..+ -=++++|+|-.
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 8999999995433222222222 24568999999863 2222 122222211 112 35779999975
No 454
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.012 Score=61.94 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChhh-hhhhcceeeeceEE---------E-eec
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS---------C-AWK 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~-i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~---------~-~~~ 138 (761)
+...++++|..|+||||++..|...... ..+.+-+............... -...|+.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3468999999999999999988654210 1112212111000000000000 00112222111000 0 123
Q ss_pred CeEEEEEeCCCCCCcH----HHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004316 139 DYQINIIDTPGHVDFT----VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~----~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (761)
++.+.||||||..... .++...++ ..|-.+||+||+.+- .+...+++.-.. +++ =++++|+|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~--~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCC--CCCCEEEEEeecCCC
Confidence 5799999999986433 33333332 346789999987532 122222232222 333 67889999753
No 455
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.78 E-value=0.011 Score=52.54 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=49.7
Q ss_pred CCCCcEEEEEeeeecc--------C-ccEEEEEEEcceecCCCEEEecCC-------CeEE--ecCcEEEEecCceeecc
Q 004316 369 PDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNT-------GKKI--KVPRLVRMHSNEMEDIQ 430 (761)
Q Consensus 369 ~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~-------~~~~--~i~~i~~~~g~~~~~v~ 430 (761)
.+.|+.++|.++|... . |.++-++|.+|.|+.||.|-+.+. +... ..+.|..+. .....++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~-~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK-AENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE-ecCcccc
Confidence 4678888888888654 3 779999999999999999976532 1111 122222222 2334789
Q ss_pred eecCCCEEEE
Q 004316 431 EAHAGQIVAV 440 (761)
Q Consensus 431 ~a~aGdIv~i 440 (761)
+|.||+.++|
T Consensus 81 ~a~pGgliGv 90 (113)
T cd03688 81 EAVPGGLIGV 90 (113)
T ss_pred EEeCCCeEEE
Confidence 9999999988
No 456
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.75 E-value=0.013 Score=61.77 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=49.4
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH----HHcCCCE-EEEEeCCCCCCCChHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPR-LAFINKLDRMGADPWKV 212 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~----~~~~~p~-iiviNK~D~~~~~~~~~ 212 (761)
+++.+.||||||..... .+..++..||.+|+++.+...-.......++.+ ...++++ -+++|+.+. .+.
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 45899999999864322 244568899999999987543222222333322 2346665 478899773 344
Q ss_pred HHHHHHHhCCce
Q 004316 213 LDQARSKLRHHC 224 (761)
Q Consensus 213 ~~~i~~~l~~~~ 224 (761)
++++.+.++...
T Consensus 190 ~~~~~~~~g~~v 201 (270)
T PRK13185 190 IDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHcCCCE
Confidence 556666665443
No 457
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.74 E-value=0.0037 Score=68.08 Aligned_cols=128 Identities=19% Similarity=0.248 Sum_probs=69.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChh---hhhh------hcceeeeceEEE------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD---LERE------KGITIQSAATSC------ 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~---~e~~------~giTi~~~~~~~------ 135 (761)
+-|.|+++|+.|+||||.+-.|..........-.|. --.+|... .|+- -|+.+......-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-----iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-----IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-----EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 378899999999999999998875443111100000 00111111 1111 244443333221
Q ss_pred -eecCeEEEEEeCCCCCCcH----HHHHHHHHhc--CeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 136 -AWKDYQINIIDTPGHVDFT----VEVERALRVL--DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 136 -~~~~~~i~liDTPG~~~f~----~~~~~al~~a--D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+.++++.||||.|+.-+. .++...+..+ .-..||++++.. ...-.+++.+-...++. =++++|+|-.
T Consensus 277 ~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 277 EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 2346899999999985443 3344444433 446688888752 12223344443333332 5667999975
No 458
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.73 E-value=0.011 Score=51.67 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=58.2
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-cc-ccCce
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DC-ASGDT 450 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdt 450 (761)
.++|.....++. |.++.+-|.+|+|++||.+.....- -||+.|+- ..-.++++|.||+.+-|.|+ ++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d---~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFD---ENGKRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEEC---CCCCCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 456777777876 9999999999999999999875432 25666654 44467999999999999999 55 67886
Q ss_pred eec
Q 004316 451 FTD 453 (761)
Q Consensus 451 L~~ 453 (761)
+..
T Consensus 77 ~~~ 79 (95)
T cd03702 77 FLV 79 (95)
T ss_pred EEE
Confidence 653
No 459
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.73 E-value=0.027 Score=60.14 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=51.8
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKVL 213 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~~ 213 (761)
++.+.||||||.... .....++..||.+|+++++..--......+++.+.. .+++. -+++|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 588999999987321 223456788999999998865332333334333322 23444 478899873 2345
Q ss_pred HHHHHHhCCceeeeeec
Q 004316 214 DQARSKLRHHCAAVQVP 230 (761)
Q Consensus 214 ~~i~~~l~~~~~~~~~p 230 (761)
+++.+.++..... .+|
T Consensus 189 ~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 189 DKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHcCCceEE-ECC
Confidence 5666666655443 444
No 460
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.67 E-value=0.021 Score=60.18 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHH----HHcCCCE-EEEEeCCCCCCCChHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPR-LAFINKLDRMGADPWKVL 213 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~----~~~~~p~-iiviNK~D~~~~~~~~~~ 213 (761)
++.+.||||||..... .+..++..||.+|+++.+...........++.+ ...+++. .+|+|++|. ...+
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-----~~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK-----TDLI 188 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-----HHHH
Confidence 5889999999875321 244568999999999988643223333333322 2345654 478899984 2344
Q ss_pred HHHHHHhCCce
Q 004316 214 DQARSKLRHHC 224 (761)
Q Consensus 214 ~~i~~~l~~~~ 224 (761)
+++.+.++...
T Consensus 189 ~~~~~~~~~~v 199 (267)
T cd02032 189 DKFVEAVGMPV 199 (267)
T ss_pred HHHHHhCCCCE
Confidence 55555555443
No 461
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.62 E-value=0.036 Score=58.60 Aligned_cols=85 Identities=11% Similarity=-0.027 Sum_probs=49.7
Q ss_pred ecCeEEEEEeCCCCCCcH-HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH---cCCCE-EEEEeCCCCCCCChHH
Q 004316 137 WKDYQINIIDTPGHVDFT-VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR---YEVPR-LAFINKLDRMGADPWK 211 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~-~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~-iiviNK~D~~~~~~~~ 211 (761)
++++++.||||||..... -....++..||.+|+|+.+...-......+++.+.. .++++ -+++|+.+.. ...+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 456899999999874211 111223458999999998754322222233333332 35655 3788976532 1255
Q ss_pred HHHHHHHHhCCc
Q 004316 212 VLDQARSKLRHH 223 (761)
Q Consensus 212 ~~~~i~~~l~~~ 223 (761)
.++++.+.++..
T Consensus 192 ~~e~l~~~~~~~ 203 (273)
T PRK13232 192 LLEAFAKKLGSQ 203 (273)
T ss_pred HHHHHHHHhCCC
Confidence 677888877653
No 462
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.55 E-value=0.021 Score=60.20 Aligned_cols=84 Identities=12% Similarity=-0.021 Sum_probs=46.4
Q ss_pred CeEEEEEeCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH----HcCCCEEEE-EeCCCCCCCChHHH
Q 004316 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPRLAF-INKLDRMGADPWKV 212 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~-~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~iiv-iNK~D~~~~~~~~~ 212 (761)
++.+.||||||....... ...++..+|.+|+++.+..-.......+++... ..+.++..+ .|+.. .....+.
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~~ 193 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDEL 193 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHHH
Confidence 589999999987522111 112334699999999886432222222332222 235666544 45522 2223456
Q ss_pred HHHHHHHhCCce
Q 004316 213 LDQARSKLRHHC 224 (761)
Q Consensus 213 ~~~i~~~l~~~~ 224 (761)
++++.+.++...
T Consensus 194 ~~~l~~~~g~~v 205 (270)
T cd02040 194 IDAFAKRLGTQM 205 (270)
T ss_pred HHHHHHHcCCCe
Confidence 777777777643
No 463
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.50 E-value=0.032 Score=55.83 Aligned_cols=113 Identities=9% Similarity=0.034 Sum_probs=91.3
Q ss_pred CCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeeccc
Q 004316 619 IGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGND 698 (761)
Q Consensus 619 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~ 698 (761)
.+..++||.|.+... +-.+---.+.+..|=..|..+|+..|...-+.|+..+.|.++-..+|.+...|.+..++|.+.+
T Consensus 88 ~~~~l~nv~vVVtRY-FGGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~~ 166 (204)
T TIGR00257 88 RGSDLGDIGAVVVRY-FGGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKSN 166 (204)
T ss_pred HHCCCCcEEEEEEEe-cCCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEeeE
Confidence 456788888887741 0011111234556777788889999999999999999999999999999999999999999988
Q ss_pred ccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004316 699 QEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 733 (761)
Q Consensus 699 ~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 733 (761)
..+ ...++..+|..+.-.|...|..+|+|+..+.
T Consensus 167 y~~-~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 167 FSN-NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred ecC-CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 754 4889999999999999999999999988654
No 464
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.46 E-value=0.016 Score=49.99 Aligned_cols=77 Identities=22% Similarity=0.184 Sum_probs=51.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcH
Q 004316 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~ 154 (761)
+++.|..|+||||++..|...-.. .|..+ ..++ .+.++|+||..+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-------------------------~g~~v----~~~~----d~iivD~~~~~~~~ 48 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-------------------------RGKRV----LLID----DYVLIDTPPGLGLL 48 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------------------------CCCeE----EEEC----CEEEEeCCCCccch
Confidence 678899999999999998643210 11111 0111 78999999987643
Q ss_pred HH-HHHHHHhcCeEEEEEeCCCCcchhHHHH
Q 004316 155 VE-VERALRVLDGAILVLCSVGGVQSQSITV 184 (761)
Q Consensus 155 ~~-~~~al~~aD~ailVvDa~~g~~~qt~~~ 184 (761)
.. ....+..+|.++++++............
T Consensus 49 ~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 49 VLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 21 2567788999999999876544444433
No 465
>PRK13695 putative NTPase; Provisional
Probab=96.44 E-value=0.0085 Score=58.81 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHhcCeEEEEEe---CCCCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 161 LRVLDGAILVLC---SVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 161 l~~aD~ailVvD---a~~g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
+..+|. +++| ..+....+....+..+.+.+.|+|+++||.
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 344555 7889 666666777888888888899999999984
No 466
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.38 E-value=0.0059 Score=61.09 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=41.7
Q ss_pred eEEEEEeCCCCCCcH------HHHHHHHHhcCeEEE---EEeCC---CCcchhH--HHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFT------VEVERALRVLDGAIL---VLCSV---GGVQSQS--ITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~------~~~~~al~~aD~ail---VvDa~---~g~~~qt--~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
..+.++|+||+++|. ..+.+.++..|.-++ ++|+. ++-..-+ ...+.-+.....|.|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 578999999997763 345667777775544 45543 2111111 112333455788999999999984
No 467
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.11 Score=54.80 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+.--|+++|.-|+|||||++.|..
T Consensus 187 df~VIgvlG~QgsGKStllslLaa 210 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAA 210 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhc
Confidence 456789999999999999998853
No 468
>PRK11568 hypothetical protein; Provisional
Probab=96.31 E-value=0.054 Score=54.23 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=91.2
Q ss_pred CCCCeeeEEEEEEe--CccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeec
Q 004316 619 IGHPVEYLRVVLTD--GASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVG 696 (761)
Q Consensus 619 ~g~pv~~v~v~l~~--~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~ 696 (761)
.+..++||.+.++. |-.+ --.+.+..|=..|.++|+.+|...-+.|...+.|.++-..+|.+...|.+..+.|.+
T Consensus 88 ~~~~l~nv~vVVtRYFGGik---LG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T PRK11568 88 MGSGVGEITAVVVRYYGGIL---LGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVN 164 (204)
T ss_pred HHCCCccEEEEEEEEcCCcc---cccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEc
Confidence 46678888888874 2111 112345567777888889999999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004316 697 NDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 733 (761)
Q Consensus 697 ~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 733 (761)
.+..+ ...++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~-~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 165 SEYQA-FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred ceecC-CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 88744 4788999999999999999999999998764
No 469
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.30 E-value=0.0028 Score=70.03 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=45.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|++||.||+||||++|+|.....+ +|... +|-|-....+.+. -.+.|.|+||.+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-----sVS~T---------------PGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-----SVSST---------------PGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-----eeecC---------------CCCcceeEEEEcC---CCceecCCCCcc
Confidence 689999999999999999999643321 12211 4555544444332 368899999985
Q ss_pred --CcHHHHHHHHHhcCeE
Q 004316 152 --DFTVEVERALRVLDGA 167 (761)
Q Consensus 152 --~f~~~~~~al~~aD~a 167 (761)
.|.. .++.-.++|+
T Consensus 371 fPSf~~--~r~emvl~Gi 386 (562)
T KOG1424|consen 371 FPSFSP--TRAEMVLNGI 386 (562)
T ss_pred ccCCCc--hHHHHHHhcC
Confidence 4432 2344444444
No 470
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.17 E-value=0.11 Score=54.61 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhh
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSY 342 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~ 342 (761)
..||+++.. .-.-++++|++...+++-|..+|++.
T Consensus 254 ~~lRkFCLr-~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 254 SHLRKFCLR-YGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred HHHHHHHHH-cCceeEEeecccccchHHHHHHHHHH
Confidence 445554433 23457889999999999999888764
No 471
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.15 E-value=0.0083 Score=75.99 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=63.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (761)
.++=..|||++|+||||++.+. |.--.. .+....+..+|+ ....+|+| -..+-.+|||+|
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s----gl~~pl------------~~~~~~~~~~~~---~~t~~c~wwf~~~avliDtaG 170 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS----GLKFPL------------AERLGAAALRGV---GGTRNCDWWFTDEAVLIDTAG 170 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC----CCCCcC------------chhhccccccCC---CCCcccceEecCCEEEEcCCC
Confidence 4567899999999999998765 221110 000000000111 01113443 345677999999
Q ss_pred CC--------CcHHHHHHHH---------HhcCeEEEEEeCCCCcchhH---HH-------HHHH---HHHcCCCEEEEE
Q 004316 150 HV--------DFTVEVERAL---------RVLDGAILVLCSVGGVQSQS---IT-------VDRQ---MRRYEVPRLAFI 199 (761)
Q Consensus 150 ~~--------~f~~~~~~al---------~~aD~ailVvDa~~g~~~qt---~~-------~~~~---~~~~~~p~iivi 199 (761)
.. .-..++..-+ +-.||+|++||+.+=..... .. -+.. ....++|+.+++
T Consensus 171 ~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~ 250 (1169)
T TIGR03348 171 RYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVL 250 (1169)
T ss_pred ccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 42 1122332222 23799999999875332111 11 1111 122478999999
Q ss_pred eCCCCC
Q 004316 200 NKLDRM 205 (761)
Q Consensus 200 NK~D~~ 205 (761)
+|+|+.
T Consensus 251 Tk~Dll 256 (1169)
T TIGR03348 251 TKADLL 256 (1169)
T ss_pred ecchhh
Confidence 999986
No 472
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.15 E-value=0.044 Score=57.99 Aligned_cols=84 Identities=13% Similarity=0.000 Sum_probs=46.9
Q ss_pred CeEEEEEeCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCcchhHHHHHH---HH-HHcCCCEE-EEEeCCCCCCCChHHH
Q 004316 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDR---QM-RRYEVPRL-AFINKLDRMGADPWKV 212 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~-~~~al~~aD~ailVvDa~~g~~~qt~~~~~---~~-~~~~~p~i-iviNK~D~~~~~~~~~ 212 (761)
.+.+.||||||....... ...++..||.+|+++.+..--......+++ .+ ...++++. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 479999999986521111 112345789999999886533333333322 22 22456654 4456522 1223455
Q ss_pred HHHHHHHhCCce
Q 004316 213 LDQARSKLRHHC 224 (761)
Q Consensus 213 ~~~i~~~l~~~~ 224 (761)
.+++.+.++...
T Consensus 193 ~e~l~~~~~~~v 204 (275)
T TIGR01287 193 IDEFAKKLGTQL 204 (275)
T ss_pred HHHHHHHhCCce
Confidence 677777776543
No 473
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.035 Score=59.58 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=68.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChhh-hhhhcceeeeceEE-------------
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS------------- 134 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~~~------------- 134 (761)
.--|.++|--|+||||.+..|.++- |.-.- -+-.........|.... -...++.+..+...
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~--LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVA--LVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCcee--EEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3356899999999999999887532 21110 01111001112222222 11123333332221
Q ss_pred EeecCeEEEEEeCCCCC----CcHHHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCCCCC
Q 004316 135 CAWKDYQINIIDTPGHV----DFTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLDRM 205 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~----~f~~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~-iiviNK~D~~ 205 (761)
+..+++.+.|+||.|-- .+..|+....+ ..|-+|+|+||.-|- .- ..++..+ .+-+ -++++|+|-.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aa--e~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AA--EAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hH--HHHHHHHHHhhccceEEEEecccC
Confidence 23356999999999952 23344433332 369999999998763 22 2233333 2333 6788999974
No 474
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.019 Score=60.90 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcc-cccccChhhhhh-hcceeeece-------EEE------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLERE-KGITIQSAA-------TSC------ 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~-~~~~d~~~~e~~-~giTi~~~~-------~~~------ 135 (761)
+.--|.++|-.|+||||.+..|.+.-..-...--+..+++. ....+....=-+ -|+.+-... ..|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 45668999999999999999887532111000001111110 111111111111 133322111 000
Q ss_pred eecCeEEEEEeCCCC----CCcHHHHHHHHHhc---Ce-----EEEEEeCCCCcchhHHHHHHHHHHcC--CCE-EEEEe
Q 004316 136 AWKDYQINIIDTPGH----VDFTVEVERALRVL---DG-----AILVLCSVGGVQSQSITVDRQMRRYE--VPR-LAFIN 200 (761)
Q Consensus 136 ~~~~~~i~liDTPG~----~~f~~~~~~al~~a---D~-----ailVvDa~~g~~~qt~~~~~~~~~~~--~p~-iiviN 200 (761)
.-.++.+.||||+|- .++..++..-.|++ +. +++|+||+.|-. .+.|++.++ +++ =++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceEEEE
Confidence 124689999999994 45666665554443 44 788889998732 234444432 344 67899
Q ss_pred CCCC
Q 004316 201 KLDR 204 (761)
Q Consensus 201 K~D~ 204 (761)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9994
No 475
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.06 E-value=0.044 Score=57.72 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=48.8
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH----HcCCCE-EEEEeCCCCCCCChHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPR-LAFINKLDRMGADPWKV 212 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~-iiviNK~D~~~~~~~~~ 212 (761)
+++++.||||||...-. .+..++..||.+|+++.+..........+++.+. ..++++ -+|+|++|.. +.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 45899999999864311 1224688999999998764332222333333222 235654 5788999853 44
Q ss_pred HHHHHHHhCCce
Q 004316 213 LDQARSKLRHHC 224 (761)
Q Consensus 213 ~~~i~~~l~~~~ 224 (761)
++++.+.++.+.
T Consensus 188 ~~~~~~~~~~~v 199 (268)
T TIGR01281 188 IERFNERVGMPV 199 (268)
T ss_pred HHHHHHHcCCCE
Confidence 566666666544
No 476
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.98 E-value=0.05 Score=57.76 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=47.6
Q ss_pred cCeEEEEEeCCCCCCcHH-HHHHHHHhcCeEEEEEeCCCCcchhHHHH---HHHHHH-cCCCEEEEEeCCCCCCCChHHH
Q 004316 138 KDYQINIIDTPGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITV---DRQMRR-YEVPRLAFINKLDRMGADPWKV 212 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~-~~~~al~~aD~ailVvDa~~g~~~qt~~~---~~~~~~-~~~p~iiviNK~D~~~~~~~~~ 212 (761)
.++++.||||||..-... .+..++..||.+|+++.+...-......+ +..... .+.++..+++.... ..+..+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRS-VIDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccC-CCchhHH
Confidence 368999999998542111 12234567999999999864322222222 233322 35555434443221 1112356
Q ss_pred HHHHHHHhCCcee
Q 004316 213 LDQARSKLRHHCA 225 (761)
Q Consensus 213 ~~~i~~~l~~~~~ 225 (761)
++++.+.++....
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 7777777776543
No 477
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.87 E-value=0.054 Score=47.48 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=56.6
Q ss_pred EEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc--ccccCce
Q 004316 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV--DCASGDT 450 (761)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl--~~~~Gdt 450 (761)
.++|.....++. |.++.+-|.+|+|++||.+.....- -+|..++ ...-..+.+|.+|+.+-+.|+ ....||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~---d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMV---DENGKALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEE---CCCCCCccccCCCCCEEEeeecCCccCCCE
Confidence 356777777776 9999999999999999999875432 2444444 444557899999999999998 3567876
Q ss_pred ee
Q 004316 451 FT 452 (761)
Q Consensus 451 L~ 452 (761)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 478
>PRK01889 GTPase RsgA; Reviewed
Probab=95.82 E-value=0.013 Score=64.50 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
..++++|.+|+|||||++.|+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998543
No 479
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.026 Score=69.75 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=63.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGH 150 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 150 (761)
++=..|||++|+||||++..- |.-.... ......|.... .+.+|+| -...-.+|||.|-
T Consensus 125 LPWy~viG~pgsGKTtal~~s----gl~Fpl~---------------~~~~~~~~~~~-gT~~cdwwf~deaVlIDtaGr 184 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNS----GLQFPLA---------------EQMGALGLAGP-GTRNCDWWFTDEAVLIDTAGR 184 (1188)
T ss_pred CCceEEecCCCCCcchHHhcc----cccCcch---------------hhhccccccCC-CCcccCcccccceEEEcCCcc
Confidence 445679999999999996533 2211100 00001111111 1344544 3567889999994
Q ss_pred ------CCcH--HHH---------HHHHHhcCeEEEEEeCCCCcch--hHH-HHH----------HHHHHcCCCEEEEEe
Q 004316 151 ------VDFT--VEV---------ERALRVLDGAILVLCSVGGVQS--QSI-TVD----------RQMRRYEVPRLAFIN 200 (761)
Q Consensus 151 ------~~f~--~~~---------~~al~~aD~ailVvDa~~g~~~--qt~-~~~----------~~~~~~~~p~iiviN 200 (761)
.++. .++ .+..+-.||+|+-+|+.+-... +.. .+. +.......|+.+++|
T Consensus 185 y~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lT 264 (1188)
T COG3523 185 YITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLT 264 (1188)
T ss_pred eecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEe
Confidence 1111 122 2233557999999998643221 111 111 112234789999999
Q ss_pred CCCCCC
Q 004316 201 KLDRMG 206 (761)
Q Consensus 201 K~D~~~ 206 (761)
|+|+..
T Consensus 265 k~Dll~ 270 (1188)
T COG3523 265 KADLLP 270 (1188)
T ss_pred cccccc
Confidence 999964
No 480
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=95.73 E-value=0.061 Score=48.08 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=57.8
Q ss_pred EEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCe--EEecCcEEEEecC-------ceeecceec--CCCEEEEec
Q 004316 375 ALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHSN-------EMEDIQEAH--AGQIVAVFG 442 (761)
Q Consensus 375 ~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~i~~~~g~-------~~~~v~~a~--aGdIv~i~g 442 (761)
+.|.....+++ |..+-+-||+|+|+.||.|....... .-+|..|+...+. ++..++++. +|--+.+.|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 45666667776 99999999999999999999876542 2367777766663 345778777 677677778
Q ss_pred c-ccccCceee
Q 004316 443 V-DCASGDTFT 452 (761)
Q Consensus 443 l-~~~~GdtL~ 452 (761)
| +...|+.|.
T Consensus 83 L~~v~aG~~~~ 93 (110)
T cd03703 83 LEKAIAGSPLL 93 (110)
T ss_pred CccccCCCEEE
Confidence 8 677787653
No 481
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.72 E-value=0.018 Score=56.43 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=34.6
Q ss_pred CeEEEEEeCCCCcchhHHHHHHH--HHHcCCCEEEEEeCCCCCC
Q 004316 165 DGAILVLCSVGGVQSQSITVDRQ--MRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 165 D~ailVvDa~~g~~~qt~~~~~~--~~~~~~p~iiviNK~D~~~ 206 (761)
|++++|+|+..+.......+.+. +...+.|+|+|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999999877777777666 4456799999999999953
No 482
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.61 E-value=0.23 Score=56.40 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhC
Q 004316 306 EEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYL 343 (761)
Q Consensus 306 ~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~l 343 (761)
...||..+.. .-.-+|++|++...+++.|..+|.+.+
T Consensus 227 qq~LR~~cL~-yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 227 QQYLRTFCLK-YGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred HHHHHHHHHh-cCCeEEEeeccccccHHHHHHHHHHHh
Confidence 3445554433 334577789999999999998887654
No 483
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.023 Score=57.04 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=70.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|.++|+--+|||++-....+.- .+. +++-.|....+|.+....+ =..+.+||-||+.+|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkM---------sPn-------eTlflESTski~~d~is~s----finf~v~dfPGQ~~~ 88 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKM---------SPN-------ETLFLESTSKITRDHISNS----FINFQVWDFPGQMDF 88 (347)
T ss_pred eEEEEeecccCcchhhheeeecc---------CCC-------ceeEeeccCcccHhhhhhh----hcceEEeecCCcccc
Confidence 49999999999999976553221 111 1111111222332221111 136789999999887
Q ss_pred HHH---HHHHHHhcCeEEEEEeCCCCcc-hhHHHHHHHHHHc----CCCEEEEEeCCCCCCCCh
Q 004316 154 TVE---VERALRVLDGAILVLCSVGGVQ-SQSITVDRQMRRY----EVPRLAFINKLDRMGADP 209 (761)
Q Consensus 154 ~~~---~~~al~~aD~ailVvDa~~g~~-~qt~~~~~~~~~~----~~p~iiviNK~D~~~~~~ 209 (761)
... ...-.+.+.+.|+|+||.+... +-+.-+.-.++.+ ++.+=+++-|.|-...+.
T Consensus 89 Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 89 FDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred CCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 543 3556788999999999976532 3344444444444 445678999999876543
No 484
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=95.48 E-value=0.11 Score=43.72 Aligned_cols=59 Identities=25% Similarity=0.449 Sum_probs=41.1
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc-ccccCceee
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV-DCASGDTFT 452 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-~~~~GdtL~ 452 (761)
+ +..|+|..|+|++|..| .|. ++..+..+. ++.+++++|.+||-|++ .|. +++.||+|.
T Consensus 19 ~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe-~~~k~v~~A~~G~eVai~Ieg~~~i~eGDiLy 80 (81)
T PF14578_consen 19 D-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIE-DNGKNVDEAKKGDEVAISIEGPTQIKEGDILY 80 (81)
T ss_dssp C-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEE-ETTEEESEEETT-EEEEEEET--TB-TT-EEE
T ss_pred C-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeE-ECCcCccccCCCCEEEEEEeCCccCCCCCEEe
Confidence 6 77779999999999999 343 355566555 44579999999999985 565 677788763
No 485
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.44 E-value=0.084 Score=55.68 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=33.1
Q ss_pred cCeEEEEEeCCCCcc--hhHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 164 LDGAILVLCSVGGVQ--SQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 164 aD~ailVvDa~~g~~--~qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
.|-+|+|+.+.++.. .+-.+.+-.+...++..+|++||+|+...
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~ 125 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD 125 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc
Confidence 677888888877643 22345566777889999999999999643
No 486
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.29 E-value=0.017 Score=62.28 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+-..++|||-+|+||||++|+|......- +-.. .|+|.......+ +..+.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-----vg~~---------------pGvT~smqeV~L---dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-----VGNV---------------PGVTRSMQEVKL---DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcccc-----CCCC---------------ccchhhhhheec---cCCceeccCCc
Q ss_pred CC
Q 004316 150 HV 151 (761)
Q Consensus 150 ~~ 151 (761)
.+
T Consensus 307 iv 308 (435)
T KOG2484|consen 307 IV 308 (435)
T ss_pred ee
No 487
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.12 E-value=0.032 Score=50.63 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll 93 (761)
+|+++|..++|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 58999999999999999983
No 488
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.06 E-value=0.052 Score=42.31 Aligned_cols=47 Identities=15% Similarity=0.375 Sum_probs=25.5
Q ss_pred HHHHHH-hcCeEEEEEeCCCCcc--hhH-HHHHHHHHH-c-CCCEEEEEeCCC
Q 004316 157 VERALR-VLDGAILVLCSVGGVQ--SQS-ITVDRQMRR-Y-EVPRLAFINKLD 203 (761)
Q Consensus 157 ~~~al~-~aD~ailVvDa~~g~~--~qt-~~~~~~~~~-~-~~p~iiviNK~D 203 (761)
...|++ ..+++++++|.++.-. ... ..+++..+. + +.|+++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 345554 4688899999976422 222 233344433 4 899999999998
No 489
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.17 Score=48.25 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCcchhHH---HHHHHHHHcCCCEEEEEeCCCC
Q 004316 155 VEVERALRVLDGAILVLCSVGGVQSQSI---TVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 155 ~~~~~al~~aD~ailVvDa~~g~~~qt~---~~~~~~~~~~~p~iiviNK~D~ 204 (761)
....+|++.||.+| ||=.-.++.-+. ..++.+...+.|.|.++-+-++
T Consensus 92 ~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 92 PALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 44566777778654 586544444443 4456666789999999887765
No 490
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.04 E-value=0.15 Score=51.86 Aligned_cols=64 Identities=11% Similarity=0.203 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhH---HHHHHHH---HHcCCCEEEEEeCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS---ITVDRQM---RRYEVPRLAFINKLDR 204 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt---~~~~~~~---~~~~~p~iiviNK~D~ 204 (761)
++.+.||||+|...-. ...++..+|.+|+-+-.+...-.+. ...++.. ....+|.-|+.|+++-
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 4789999999976533 4567788999999876654433333 3333322 2347899999999973
No 491
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.055 Score=53.33 Aligned_cols=103 Identities=21% Similarity=0.174 Sum_probs=57.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh----hcceeeeceEEEeecCeEEEEEeCCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE----KGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~----~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+|.|+|++||||||+...|....+... ++.+ |....+.. .|..++ .++|-..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h----lstg-------d~~r~~~~~~t~lg~~~k-------------~~i~~g~ 57 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH----LDTG-------DILRAAIAERTELGEEIK-------------KYIDKGE 57 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE----EcHh-------HHhHhhhccCChHHHHHH-------------HHHHcCC
Confidence 689999999999999999987754432 2222 11111111 111111 0334443
Q ss_pred CCC---cHHHHHHHHHhcCeE-EEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEe
Q 004316 150 HVD---FTVEVERALRVLDGA-ILVLCSVGGVQSQSITVDRQMRRYEVPRLAFIN 200 (761)
Q Consensus 150 ~~~---f~~~~~~al~~aD~a-ilVvDa~~g~~~qt~~~~~~~~~~~~p~iiviN 200 (761)
.+. ....+...+..+|+. .+++|.--....|.+.+-+.+..++.+.-.++|
T Consensus 58 lv~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~ 112 (178)
T COG0563 58 LVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIE 112 (178)
T ss_pred ccchHHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEe
Confidence 211 123445556666744 477787666667777776777777766544443
No 492
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.92 E-value=0.023 Score=60.89 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++-..|++||.||+||||++|.| ....+.+...+.+...+-.+..-+. +|.|||+||
T Consensus 305 kkqISVGfiGYPNvGKSSiINTL--R~KkVCkvAPIpGETKVWQYItLmk---------------------rIfLIDcPG 361 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTL--RKKKVCKVAPIPGETKVWQYITLMK---------------------RIFLIDCPG 361 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHH--hhcccccccCCCCcchHHHHHHHHh---------------------ceeEecCCC
Q ss_pred CC
Q 004316 150 HV 151 (761)
Q Consensus 150 ~~ 151 (761)
.+
T Consensus 362 vV 363 (572)
T KOG2423|consen 362 VV 363 (572)
T ss_pred cc
No 493
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.76 E-value=0.16 Score=53.71 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=47.3
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCcchhHHHH----HHHHHHcCCCEE-EEEeCCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALR------VLDGAILVLCSVGGVQSQSITV----DRQMRRYEVPRL-AFINKLDRMG 206 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~------~aD~ailVvDa~~g~~~qt~~~----~~~~~~~~~p~i-iviNK~D~~~ 206 (761)
+.|.+.||||+|.. +..++. .||.+|+++++..--......+ .+.....+++++ +++|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--
Confidence 35899999998843 222333 7999999998753211112222 233334566654 78897431
Q ss_pred CChHHHHHHHHHHhCCce
Q 004316 207 ADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 207 ~~~~~~~~~i~~~l~~~~ 224 (761)
....+.++++.+.++...
T Consensus 190 ~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 190 DGELELLEEFTDAIGTQM 207 (275)
T ss_pred CcHHHHHHHHHHHcCCce
Confidence 122456778888777644
No 494
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=94.74 E-value=0.22 Score=51.68 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~ 217 (761)
++.+.|||||+..+ ..+..++..+|.+|+|+++...-...+....+.+...+.+. .+++|+.|..... ...+.+.
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l~ 183 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEIE 183 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHHH
Confidence 48999999999765 45677889999999999987554445555566666677775 5889999863211 1234455
Q ss_pred HHhCCc
Q 004316 218 SKLRHH 223 (761)
Q Consensus 218 ~~l~~~ 223 (761)
+.++.+
T Consensus 184 ~~~~~~ 189 (251)
T TIGR01969 184 TILEVP 189 (251)
T ss_pred HhhCCc
Confidence 555543
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.63 E-value=0.17 Score=48.89 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.|+|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 496
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.62 E-value=0.44 Score=50.38 Aligned_cols=84 Identities=8% Similarity=-0.056 Sum_probs=47.1
Q ss_pred cCeEEEEEeCCCCCCcHH-HHHHHHHhcCeEEEEEeCCCCcchhHHHH---HHHHH-HcCCCE-EEEEeCCCCCCCChHH
Q 004316 138 KDYQINIIDTPGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITV---DRQMR-RYEVPR-LAFINKLDRMGADPWK 211 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~-~~~~al~~aD~ailVvDa~~g~~~qt~~~---~~~~~-~~~~p~-iiviNK~D~~~~~~~~ 211 (761)
++|.+.||||||...... ....++..||.+|+++.+..--......+ ++..+ ..++++ -+++||... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 458999999998642111 11224458999999997754322222222 23332 234444 367797531 12345
Q ss_pred HHHHHHHHhCCc
Q 004316 212 VLDQARSKLRHH 223 (761)
Q Consensus 212 ~~~~i~~~l~~~ 223 (761)
.++++.+.++..
T Consensus 194 ~~~~l~~~~~~~ 205 (274)
T PRK13235 194 MIEELARKIGTQ 205 (274)
T ss_pred HHHHHHHHcCCc
Confidence 677777777754
No 497
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=0.18 Score=52.13 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=47.9
Q ss_pred eecCeEEEEEeCCC-CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004316 136 AWKDYQINIIDTPG-HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (761)
Q Consensus 136 ~~~~~~i~liDTPG-~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D 203 (761)
+|++.++.+||||. ..|-.-.+...++.+|+||+|--..+--.....+-...+++.++|++=++-.|-
T Consensus 153 dwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs 221 (300)
T KOG3022|consen 153 DWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMS 221 (300)
T ss_pred CCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccc
Confidence 56678999999964 445444455666777999988766544344455677889999999987775443
No 498
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.51 E-value=0.13 Score=51.74 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=50.8
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~ 205 (761)
.+.+.|||||..... .......+.+|.+|+|+++...-........+++...+.++ -+|+||.|..
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 488999999974221 23334456799999999998777777788888888888886 6788999964
No 499
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.48 E-value=0.41 Score=51.30 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=46.0
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPW 210 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~ 210 (761)
++|++.||||+|-.-.. .....+ ..||.+|+++.+..--......+++.+.. .++.. -+++|+.. .....
T Consensus 118 ~~yD~IlID~~~~~~~n-al~~~~~~~aAD~vIIPv~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r--t~~~~ 194 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCG-GFAMPIRENKAQEIYIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQ--TDREL 194 (295)
T ss_pred ccCCEEEEEcCCCceEC-CCccccccccCceEEEecCccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC--CchHH
Confidence 46899999998742100 111111 37999999998864322222223333222 23444 47788533 22334
Q ss_pred HHHHHHHHHhCCce
Q 004316 211 KVLDQARSKLRHHC 224 (761)
Q Consensus 211 ~~~~~i~~~l~~~~ 224 (761)
+.++++.+.++...
T Consensus 195 ~~~e~l~e~~g~~l 208 (295)
T PRK13234 195 ELAEALAARLGSKL 208 (295)
T ss_pred HHHHHHHHHhCCce
Confidence 66778888777643
No 500
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=94.46 E-value=0.092 Score=56.75 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=61.0
Q ss_pred hcceeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcc-----------hhHHHHHHHHHH--
Q 004316 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-----------SQSITVDRQMRR-- 190 (761)
Q Consensus 124 ~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~-----------~qt~~~~~~~~~-- 190 (761)
|--|.......|..++..+-++|.+|+..=..-|.-....++++|++++-++-.+ .++..+++....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 4455666677788899999999999997767778889999999999999875322 223334443333
Q ss_pred --cCCCEEEEEeCCCC
Q 004316 191 --YEVPRLAFINKLDR 204 (761)
Q Consensus 191 --~~~p~iiviNK~D~ 204 (761)
.+.++|+|+||.|+
T Consensus 259 ~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDL 274 (354)
T ss_pred ccccCcEEEEeecHHH
Confidence 36789999999998
Done!