Query 004316
Match_columns 761
No_of_seqs 480 out of 2916
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 21:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 7E-139 2E-143 1235.2 72.2 684 68-754 9-708 (709)
2 2rdo_7 EF-G, elongation factor 100.0 5E-136 2E-140 1204.7 80.2 682 69-755 7-703 (704)
3 2xex_A Elongation factor G; GT 100.0 4E-134 1E-138 1188.3 79.9 683 68-755 6-691 (693)
4 1dar_A EF-G, elongation factor 100.0 3E-134 1E-138 1189.0 70.7 679 69-753 9-690 (691)
5 2dy1_A Elongation factor G; tr 100.0 1E-125 4E-130 1112.1 75.6 655 69-757 6-664 (665)
6 3j25_A Tetracycline resistance 100.0 6E-129 2E-133 1135.3 21.2 615 71-746 1-616 (638)
7 1n0u_A EF-2, elongation factor 100.0 1E-118 5E-123 1075.3 57.0 669 69-759 16-827 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 5.2E-93 1.8E-97 815.4 36.8 487 65-574 24-523 (548)
9 2ywe_A GTP-binding protein LEP 100.0 4.1E-82 1.4E-86 726.3 50.2 461 69-742 3-483 (600)
10 3cb4_D GTP-binding protein LEP 100.0 1.5E-80 5E-85 715.2 49.0 458 70-742 2-478 (599)
11 3tr5_A RF-3, peptide chain rel 100.0 5.4E-76 1.9E-80 670.9 35.2 461 69-551 10-476 (528)
12 2h5e_A Peptide chain release f 100.0 3.4E-75 1.2E-79 665.1 38.4 461 69-551 10-477 (529)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 5.6E-42 1.9E-46 359.6 20.6 196 439-748 2-209 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 1.2E-35 4.1E-40 333.0 29.7 280 70-457 15-329 (439)
15 1g7s_A Translation initiation 100.0 3.5E-37 1.2E-41 355.2 13.4 330 71-492 4-373 (594)
16 2c78_A Elongation factor TU-A; 100.0 1.5E-34 5E-39 321.7 26.3 272 70-455 9-308 (405)
17 1jny_A EF-1-alpha, elongation 100.0 1.2E-34 4.2E-39 324.9 23.7 279 70-457 4-319 (435)
18 1d2e_A Elongation factor TU (E 100.0 1.8E-34 6.1E-39 319.9 22.4 269 72-455 3-290 (397)
19 3mca_A HBS1, elongation factor 100.0 8.7E-35 3E-39 336.5 17.2 276 68-456 173-490 (592)
20 1r5b_A Eukaryotic peptide chai 100.0 1.6E-33 5.6E-38 318.1 22.2 279 69-456 40-357 (467)
21 1zun_B Sulfate adenylate trans 100.0 1.1E-32 3.8E-37 309.0 26.5 277 70-456 22-327 (434)
22 3p26_A Elongation factor 1 alp 100.0 1.6E-32 5.4E-37 311.8 27.2 282 70-456 31-363 (483)
23 2elf_A Protein translation elo 100.0 6.5E-33 2.2E-37 303.4 21.5 240 73-453 22-275 (370)
24 1kk1_A EIF2gamma; initiation o 100.0 1.9E-32 6.4E-37 305.2 25.3 255 70-456 8-317 (410)
25 3avx_A Elongation factor TS, e 100.0 1.4E-32 4.7E-37 327.5 24.1 273 69-456 293-582 (1289)
26 1f60_A Elongation factor EEF1A 100.0 2.8E-32 9.5E-37 307.3 25.4 276 71-456 6-329 (458)
27 3izq_1 HBS1P, elongation facto 100.0 4.1E-32 1.4E-36 314.9 21.9 287 70-456 165-497 (611)
28 1s0u_A EIF-2-gamma, translatio 100.0 3.8E-31 1.3E-35 294.3 26.4 254 70-455 6-314 (408)
29 1wb1_A Translation elongation 100.0 7E-32 2.4E-36 305.5 12.5 257 71-452 18-281 (482)
30 3sjy_A Translation initiation 100.0 4.7E-30 1.6E-34 285.1 24.1 267 70-456 6-309 (403)
31 1zo1_I IF2, translation initia 100.0 3.6E-32 1.2E-36 306.0 5.1 252 71-454 3-257 (501)
32 3izy_P Translation initiation 100.0 4E-31 1.4E-35 299.8 5.7 254 71-456 3-260 (537)
33 2hjg_A GTP-binding protein ENG 99.8 1.1E-20 3.9E-25 211.7 11.9 151 36-206 137-300 (436)
34 4dcu_A GTP-binding protein ENG 99.8 6.2E-20 2.1E-24 206.9 13.6 151 36-206 157-320 (456)
35 1wf3_A GTP-binding protein; GT 99.8 3E-19 1E-23 189.9 17.1 116 71-206 6-131 (301)
36 3iev_A GTP-binding protein ERA 99.8 5.9E-19 2E-23 188.5 18.0 114 72-205 10-135 (308)
37 2lkc_A Translation initiation 99.8 5.1E-19 1.7E-23 172.2 10.3 119 70-209 6-124 (178)
38 2dyk_A GTP-binding protein; GT 99.8 2.6E-18 8.8E-23 164.2 14.4 114 72-205 1-121 (161)
39 4dhe_A Probable GTP-binding pr 99.8 1.6E-18 5.4E-23 175.7 12.9 119 69-206 26-158 (223)
40 3qq5_A Small GTP-binding prote 99.8 4.4E-19 1.5E-23 196.3 8.2 119 68-208 30-156 (423)
41 1ega_A Protein (GTP-binding pr 99.8 1.9E-18 6.6E-23 183.9 12.6 114 72-206 8-130 (301)
42 1mky_A Probable GTP-binding pr 99.8 2.1E-18 7.3E-23 193.4 13.0 150 37-206 139-306 (439)
43 2xtp_A GTPase IMAP family memb 99.8 2.5E-19 8.5E-24 186.7 5.0 203 70-297 20-257 (260)
44 3t1o_A Gliding protein MGLA; G 99.8 3.9E-18 1.3E-22 168.7 13.1 128 70-206 12-149 (198)
45 1r8s_A ADP-ribosylation factor 99.8 2.8E-17 9.5E-22 157.6 18.3 110 74-207 2-116 (164)
46 3iby_A Ferrous iron transport 99.7 2.1E-18 7.3E-23 179.1 10.9 110 72-204 1-122 (256)
47 4bas_A ADP-ribosylation factor 99.7 8.6E-18 2.9E-22 166.7 14.7 117 69-207 14-142 (199)
48 1svi_A GTP-binding protein YSX 99.7 2.1E-17 7E-22 163.6 16.3 116 69-206 20-148 (195)
49 1zd9_A ADP-ribosylation factor 99.7 2.6E-17 9E-22 162.3 17.0 114 71-207 21-139 (188)
50 1zj6_A ADP-ribosylation factor 99.7 2.7E-17 9.4E-22 161.9 17.0 112 71-206 15-131 (187)
51 1mky_A Probable GTP-binding pr 99.7 1.5E-17 5.2E-22 186.4 16.9 112 73-204 2-122 (439)
52 1upt_A ARL1, ADP-ribosylation 99.7 1.1E-17 3.8E-22 161.4 13.6 113 71-207 6-123 (171)
53 1fzq_A ADP-ribosylation factor 99.7 7E-17 2.4E-21 158.4 18.2 114 70-207 14-132 (181)
54 3i8s_A Ferrous iron transport 99.7 6.5E-18 2.2E-22 177.4 10.9 109 73-204 4-124 (274)
55 2il1_A RAB12; G-protein, GDP, 99.7 5.5E-17 1.9E-21 160.6 16.9 115 70-205 24-144 (192)
56 2h57_A ADP-ribosylation factor 99.7 2.1E-17 7E-22 163.2 13.8 114 71-206 20-140 (190)
57 2hxs_A RAB-26, RAS-related pro 99.7 5.5E-17 1.9E-21 157.7 16.4 114 71-205 5-128 (178)
58 2fg5_A RAB-22B, RAS-related pr 99.7 2.7E-17 9.3E-22 162.8 14.4 117 70-205 21-141 (192)
59 2b6h_A ADP-ribosylation factor 99.7 5.8E-17 2E-21 160.6 16.8 114 70-207 27-145 (192)
60 1r2q_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 157.5 14.7 116 71-205 5-124 (170)
61 2efe_B Small GTP-binding prote 99.7 4.8E-17 1.6E-21 158.6 15.7 116 71-205 11-130 (181)
62 1z0f_A RAB14, member RAS oncog 99.7 5.2E-17 1.8E-21 157.8 15.6 117 70-205 13-133 (179)
63 3pqc_A Probable GTP-binding pr 99.7 6.4E-17 2.2E-21 159.6 16.4 114 70-206 21-147 (195)
64 3tkl_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 162.1 14.3 116 70-206 14-135 (196)
65 2p5s_A RAS and EF-hand domain 99.7 5.3E-17 1.8E-21 161.7 15.7 118 69-205 25-146 (199)
66 2h17_A ADP-ribosylation factor 99.7 3.3E-17 1.1E-21 160.5 13.9 112 71-206 20-136 (181)
67 3tw8_B RAS-related protein RAB 99.7 2.4E-17 8.1E-22 160.5 12.4 116 69-205 6-126 (181)
68 2hup_A RAS-related protein RAB 99.7 8.9E-17 3E-21 160.5 16.4 116 69-205 26-147 (201)
69 1zbd_A Rabphilin-3A; G protein 99.7 5.1E-17 1.8E-21 162.0 14.4 118 70-206 6-127 (203)
70 2y8e_A RAB-protein 6, GH09086P 99.7 8.7E-17 3E-21 156.2 15.5 113 72-205 14-132 (179)
71 3k53_A Ferrous iron transport 99.7 3.9E-17 1.3E-21 171.2 13.9 111 71-204 2-121 (271)
72 2fu5_C RAS-related protein RAB 99.7 2.7E-17 9.3E-22 160.9 11.9 116 70-206 6-127 (183)
73 1ek0_A Protein (GTP-binding pr 99.7 8E-17 2.7E-21 154.9 14.7 114 73-205 4-121 (170)
74 2gf9_A RAS-related protein RAB 99.7 2.6E-17 8.9E-22 162.3 11.3 117 70-205 20-140 (189)
75 3dz8_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 161.2 12.7 118 69-205 20-141 (191)
76 1ksh_A ARF-like protein 2; sma 99.7 3.8E-17 1.3E-21 160.5 12.2 114 70-207 16-134 (186)
77 2wji_A Ferrous iron transport 99.7 7.6E-17 2.6E-21 155.6 13.9 109 73-204 4-120 (165)
78 2oil_A CATX-8, RAS-related pro 99.7 8.8E-17 3E-21 159.0 14.5 118 69-205 22-143 (193)
79 3bc1_A RAS-related protein RAB 99.7 8.4E-17 2.9E-21 158.4 14.3 116 70-205 9-140 (195)
80 3a1s_A Iron(II) transport prot 99.7 2.8E-17 9.5E-22 170.9 11.3 111 71-204 4-122 (258)
81 1z0j_A RAB-22, RAS-related pro 99.7 3.9E-17 1.3E-21 157.2 11.5 115 72-205 6-124 (170)
82 1u8z_A RAS-related protein RAL 99.7 4.5E-16 1.5E-20 149.2 18.6 114 72-205 4-122 (168)
83 4dsu_A GTPase KRAS, isoform 2B 99.7 2.5E-16 8.5E-21 154.5 17.2 112 72-205 4-122 (189)
84 2g6b_A RAS-related protein RAB 99.7 1.1E-16 3.8E-21 155.9 14.5 117 70-206 8-130 (180)
85 2bme_A RAB4A, RAS-related prot 99.7 8.2E-17 2.8E-21 157.8 13.7 115 70-205 8-128 (186)
86 1m2o_B GTP-binding protein SAR 99.7 1.6E-16 5.4E-21 157.2 15.7 111 72-206 23-138 (190)
87 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.1E-16 3.6E-21 155.6 14.2 114 71-205 6-129 (177)
88 1g16_A RAS-related protein SEC 99.7 7.7E-17 2.6E-21 155.2 13.0 114 71-205 2-121 (170)
89 2gj8_A MNME, tRNA modification 99.7 9.7E-17 3.3E-21 156.1 13.7 113 73-205 5-128 (172)
90 2hjg_A GTP-binding protein ENG 99.7 1.5E-17 5.1E-22 186.4 8.8 113 73-205 4-124 (436)
91 1f6b_A SAR1; gtpases, N-termin 99.7 1.2E-16 4.1E-21 159.3 14.4 112 71-206 24-140 (198)
92 2ew1_A RAS-related protein RAB 99.7 1.1E-16 3.8E-21 160.0 13.9 116 69-205 23-144 (201)
93 2bov_A RAla, RAS-related prote 99.7 7.2E-16 2.5E-20 153.7 19.7 114 70-205 12-132 (206)
94 2f7s_A C25KG, RAS-related prot 99.7 5E-17 1.7E-21 163.9 11.4 117 70-205 23-154 (217)
95 2fn4_A P23, RAS-related protei 99.7 2.9E-16 1E-20 152.7 16.4 114 70-205 7-127 (181)
96 1c1y_A RAS-related protein RAP 99.7 3.4E-16 1.2E-20 150.2 16.5 113 73-205 4-121 (167)
97 3clv_A RAB5 protein, putative; 99.7 2.3E-16 7.8E-21 156.5 15.8 65 140-204 93-159 (208)
98 3kkq_A RAS-related protein M-R 99.7 1.7E-16 5.7E-21 155.3 14.4 116 71-206 17-137 (183)
99 1ky3_A GTP-binding protein YPT 99.7 1.5E-16 5E-21 155.0 13.9 115 70-205 6-131 (182)
100 2erx_A GTP-binding protein DI- 99.7 4.2E-16 1.4E-20 150.1 17.0 113 73-205 4-122 (172)
101 3cph_A RAS-related protein SEC 99.7 8.7E-17 3E-21 161.4 12.6 115 70-205 18-138 (213)
102 2a9k_A RAS-related protein RAL 99.7 7.2E-16 2.5E-20 150.8 18.6 113 71-205 17-136 (187)
103 1moz_A ARL1, ADP-ribosylation 99.7 4.7E-17 1.6E-21 159.1 10.1 114 70-207 16-134 (183)
104 1kao_A RAP2A; GTP-binding prot 99.7 5.3E-16 1.8E-20 148.5 17.2 113 73-205 4-121 (167)
105 2x77_A ADP-ribosylation factor 99.7 4E-17 1.4E-21 160.9 9.6 113 71-207 21-138 (189)
106 1vg8_A RAS-related protein RAB 99.7 7.5E-17 2.6E-21 161.1 11.5 117 70-205 6-130 (207)
107 1z2a_A RAS-related protein RAB 99.7 8E-17 2.7E-21 154.8 11.3 116 71-205 4-122 (168)
108 1x3s_A RAS-related protein RAB 99.7 9.6E-17 3.3E-21 158.5 12.1 116 71-205 14-134 (195)
109 2a5j_A RAS-related protein RAB 99.7 9.4E-17 3.2E-21 158.7 12.0 117 70-205 19-139 (191)
110 3b1v_A Ferrous iron uptake tra 99.7 5.6E-17 1.9E-21 169.7 10.9 109 72-204 3-119 (272)
111 3q85_A GTP-binding protein REM 99.7 2.9E-16 1E-20 151.2 15.0 115 72-205 2-122 (169)
112 2nzj_A GTP-binding protein REM 99.7 3E-16 1E-20 151.9 15.2 116 71-206 3-125 (175)
113 3gj0_A GTP-binding nuclear pro 99.7 1.8E-17 6.3E-22 167.9 6.7 118 70-206 13-133 (221)
114 2ce2_X GTPase HRAS; signaling 99.7 1.1E-15 3.7E-20 146.0 18.7 114 73-206 4-122 (166)
115 2o52_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 159.4 12.2 115 70-205 23-143 (200)
116 2bcg_Y Protein YP2, GTP-bindin 99.7 1.6E-16 5.6E-21 158.8 13.2 116 70-206 6-127 (206)
117 2fh5_B SR-beta, signal recogni 99.7 7.3E-16 2.5E-20 155.0 18.0 126 71-221 6-145 (214)
118 2atx_A Small GTP binding prote 99.7 1.8E-16 6.3E-21 156.8 13.3 114 71-206 17-136 (194)
119 3gee_A MNME, tRNA modification 99.7 7.7E-17 2.6E-21 181.3 11.2 113 73-207 234-358 (476)
120 1z08_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 154.0 10.5 116 71-205 5-124 (170)
121 2wjg_A FEOB, ferrous iron tran 99.7 2.2E-16 7.7E-21 155.1 12.5 111 71-204 6-124 (188)
122 2qu8_A Putative nucleolar GTP- 99.7 1.2E-15 4.2E-20 155.3 18.4 115 71-206 28-156 (228)
123 3q72_A GTP-binding protein RAD 99.7 2.9E-16 1E-20 150.7 12.7 114 72-206 2-120 (166)
124 3o47_A ADP-ribosylation factor 99.7 2.1E-16 7.1E-21 170.3 12.8 113 71-207 164-281 (329)
125 1z06_A RAS-related protein RAB 99.7 1.4E-16 4.9E-21 157.0 10.6 115 70-205 18-140 (189)
126 3t5g_A GTP-binding protein RHE 99.7 2.3E-16 8E-21 154.0 11.9 113 71-205 5-124 (181)
127 3con_A GTPase NRAS; structural 99.7 1E-15 3.5E-20 150.7 16.6 113 72-206 21-140 (190)
128 3llu_A RAS-related GTP-binding 99.7 8.9E-16 3.1E-20 152.4 16.1 116 69-206 17-143 (196)
129 2gf0_A GTP-binding protein DI- 99.7 1.3E-15 4.6E-20 150.8 17.3 116 71-206 7-128 (199)
130 3bwd_D RAC-like GTP-binding pr 99.7 1.2E-16 4.1E-21 156.0 9.4 116 71-206 7-126 (182)
131 4dcu_A GTP-binding protein ENG 99.7 7.7E-17 2.6E-21 181.6 9.0 115 71-205 22-144 (456)
132 3cpj_B GTP-binding protein YPT 99.7 2.5E-16 8.4E-21 159.9 11.8 115 70-205 11-131 (223)
133 3lvq_E ARF-GAP with SH3 domain 99.7 3.5E-16 1.2E-20 178.4 14.2 114 70-207 320-438 (497)
134 1xzp_A Probable tRNA modificat 99.7 4.6E-16 1.6E-20 175.1 14.2 112 73-206 244-364 (482)
135 4gzl_A RAS-related C3 botulinu 99.7 3.6E-16 1.2E-20 156.4 11.8 114 71-206 29-148 (204)
136 3lxw_A GTPase IMAP family memb 99.6 7.7E-16 2.6E-20 159.0 14.3 120 71-210 20-157 (247)
137 4djt_A GTP-binding nuclear pro 99.6 1.8E-16 6.3E-21 159.9 9.3 117 70-205 9-130 (218)
138 1mh1_A RAC1; GTP-binding, GTPa 99.6 5.1E-16 1.7E-20 151.9 12.2 115 72-206 5-123 (186)
139 3l0i_B RAS-related protein RAB 99.6 3E-17 1E-21 163.4 3.4 115 70-205 31-151 (199)
140 3oes_A GTPase rhebl1; small GT 99.6 3.4E-16 1.2E-20 156.1 10.9 116 70-205 22-142 (201)
141 2j1l_A RHO-related GTP-binding 99.6 1.9E-15 6.4E-20 152.4 16.1 114 71-206 33-152 (214)
142 2gco_A H9, RHO-related GTP-bin 99.6 6.2E-16 2.1E-20 154.2 12.1 115 72-206 25-143 (201)
143 3cbq_A GTP-binding protein REM 99.6 3.3E-15 1.1E-19 148.4 16.8 116 70-206 21-144 (195)
144 3reg_A RHO-like small GTPase; 99.6 9.9E-16 3.4E-20 151.6 12.8 117 70-206 21-141 (194)
145 4dkx_A RAS-related protein RAB 99.6 3.1E-15 1.1E-19 151.1 16.5 114 73-205 14-131 (216)
146 2q3h_A RAS homolog gene family 99.6 6.9E-16 2.4E-20 153.5 11.2 115 70-206 18-138 (201)
147 2yc2_C IFT27, small RAB-relate 99.6 3.6E-16 1.2E-20 156.0 8.8 116 71-205 19-145 (208)
148 2j0v_A RAC-like GTP-binding pr 99.6 9.3E-16 3.2E-20 154.0 11.8 115 71-205 8-126 (212)
149 2fv8_A H6, RHO-related GTP-bin 99.6 2.7E-15 9.2E-20 150.3 14.4 113 72-206 25-143 (207)
150 3geh_A MNME, tRNA modification 99.6 2.5E-16 8.5E-21 176.5 7.1 112 73-206 225-344 (462)
151 3ihw_A Centg3; RAS, centaurin, 99.6 6.2E-15 2.1E-19 145.0 16.3 107 71-205 19-132 (184)
152 2atv_A RERG, RAS-like estrogen 99.6 8.6E-15 3E-19 145.1 17.2 114 71-205 27-145 (196)
153 2cxx_A Probable GTP-binding pr 99.6 1.9E-15 6.6E-20 148.4 12.1 122 73-220 2-149 (190)
154 3lxx_A GTPase IMAP family memb 99.6 3.5E-16 1.2E-20 160.7 6.0 156 69-244 26-205 (239)
155 3c5c_A RAS-like protein 12; GD 99.6 6.3E-15 2.2E-19 145.2 13.7 114 71-205 20-140 (187)
156 2iwr_A Centaurin gamma 1; ANK 99.6 1.5E-14 5.3E-19 140.5 16.1 108 72-205 7-121 (178)
157 2p67_A LAO/AO transport system 99.6 1.1E-15 3.9E-20 165.4 8.6 243 69-341 53-329 (341)
158 3q3j_B RHO-related GTP-binding 99.6 3.6E-15 1.2E-19 150.4 11.3 117 70-206 25-145 (214)
159 3t5d_A Septin-7; GTP-binding p 99.6 4.4E-15 1.5E-19 155.8 11.7 120 72-205 8-157 (274)
160 1m7b_A RND3/RHOE small GTP-bin 99.6 3.3E-15 1.1E-19 146.6 9.9 116 70-205 5-124 (184)
161 3r7w_A Gtpase1, GTP-binding pr 99.6 1.6E-14 5.4E-19 154.1 15.6 114 73-206 4-129 (307)
162 1gwn_A RHO-related GTP-binding 99.6 3.1E-15 1.1E-19 149.9 9.2 116 70-205 26-145 (205)
163 1jwy_B Dynamin A GTPase domain 99.6 4.4E-15 1.5E-19 158.9 10.4 69 138-206 129-212 (315)
164 1lnz_A SPO0B-associated GTP-bi 99.6 4.9E-15 1.7E-19 159.7 10.1 114 71-205 157-287 (342)
165 3th5_A RAS-related C3 botulinu 99.3 4.6E-16 1.6E-20 155.4 0.0 117 70-206 28-148 (204)
166 2aka_B Dynamin-1; fusion prote 99.5 1.7E-14 5.8E-19 152.9 11.7 137 70-206 24-206 (299)
167 2qtf_A Protein HFLX, GTP-bindi 99.5 1.5E-13 5.1E-18 149.6 16.9 116 71-207 178-307 (364)
168 2wkq_A NPH1-1, RAS-related C3 99.5 6.1E-14 2.1E-18 150.7 13.7 115 70-206 153-273 (332)
169 2g3y_A GTP-binding protein GEM 99.5 3.8E-14 1.3E-18 142.7 11.1 116 70-205 35-158 (211)
170 2e87_A Hypothetical protein PH 99.5 1.1E-13 3.7E-18 150.9 14.9 114 71-205 166-293 (357)
171 2zej_A Dardarin, leucine-rich 99.5 6.5E-14 2.2E-18 137.4 10.8 117 73-206 3-126 (184)
172 2cjw_A GTP-binding protein GEM 99.5 1.3E-13 4.3E-18 136.6 12.3 115 71-205 5-127 (192)
173 1nrj_B SR-beta, signal recogni 99.5 2.4E-13 8.1E-18 137.0 14.5 115 70-209 10-137 (218)
174 3dpu_A RAB family protein; roc 99.5 8.6E-14 3E-18 159.9 10.7 116 70-206 39-164 (535)
175 3def_A T7I23.11 protein; chlor 99.4 5E-13 1.7E-17 139.1 13.6 115 71-205 35-164 (262)
176 1pui_A ENGB, probable GTP-bind 99.4 9E-13 3.1E-17 131.8 14.2 114 70-205 24-150 (210)
177 2f9l_A RAB11B, member RAS onco 99.4 2.3E-13 7.7E-18 135.3 9.5 114 71-205 4-123 (199)
178 3p32_A Probable GTPase RV1496/ 99.4 2.9E-13 9.8E-18 147.3 9.5 129 70-205 77-230 (355)
179 2wsm_A Hydrogenase expression/ 99.4 4.6E-13 1.6E-17 135.2 10.1 127 69-205 27-167 (221)
180 1h65_A Chloroplast outer envel 99.4 2.7E-12 9.2E-17 134.2 16.0 117 71-207 38-169 (270)
181 2qag_A Septin-2, protein NEDD5 99.4 8.7E-13 3E-17 143.6 11.3 122 72-206 37-188 (361)
182 2ged_A SR-beta, signal recogni 99.4 8.4E-13 2.9E-17 130.0 9.7 126 70-220 46-185 (193)
183 2j69_A Bacterial dynamin-like 99.4 2.8E-12 9.4E-17 151.1 14.3 66 140-205 174-243 (695)
184 1wxq_A GTP-binding protein; st 99.4 2E-13 7E-18 150.1 4.3 82 74-176 2-114 (397)
185 1oix_A RAS-related protein RAB 99.4 1.3E-12 4.5E-17 129.0 9.7 115 70-205 27-147 (191)
186 2x2e_A Dynamin-1; nitration, h 99.3 8.2E-13 2.8E-17 143.7 7.6 137 70-206 29-211 (353)
187 2qpt_A EH domain-containing pr 99.3 4.1E-12 1.4E-16 145.6 12.5 138 69-206 62-232 (550)
188 3r7w_B Gtpase2, GTP-binding pr 99.3 1.3E-11 4.4E-16 130.9 15.0 112 74-207 1-121 (331)
189 1udx_A The GTP-binding protein 99.3 8.3E-12 2.8E-16 137.6 12.8 115 71-206 156-283 (416)
190 3c5h_A Glucocorticoid receptor 99.3 1E-12 3.6E-17 136.1 5.0 43 163-205 162-211 (255)
191 4a9a_A Ribosome-interacting GT 99.3 3.2E-11 1.1E-15 130.9 15.9 134 71-226 71-226 (376)
192 3zvr_A Dynamin-1; hydrolase, D 99.3 4.5E-12 1.5E-16 148.2 9.9 137 70-206 49-231 (772)
193 2www_A Methylmalonic aciduria 99.2 2.8E-11 9.7E-16 131.1 10.7 62 137-205 164-225 (349)
194 2j37_W Signal recognition part 99.2 2.8E-11 9.6E-16 136.2 10.2 149 70-223 99-269 (504)
195 1yrb_A ATP(GTP)binding protein 99.2 6.3E-11 2.2E-15 122.8 10.1 67 139-206 108-185 (262)
196 3t34_A Dynamin-related protein 99.1 1.6E-10 5.6E-15 125.8 12.4 68 139-206 135-217 (360)
197 1jal_A YCHF protein; nucleotid 99.1 1E-09 3.5E-14 118.4 15.6 81 74-175 4-108 (363)
198 2qm8_A GTPase/ATPase; G protei 99.0 3E-10 1E-14 122.4 5.9 63 136-205 144-206 (337)
199 2dby_A GTP-binding protein; GD 99.0 2.6E-08 9E-13 108.0 20.7 82 73-175 2-111 (368)
200 2qnr_A Septin-2, protein NEDD5 98.9 2.3E-09 7.9E-14 113.6 9.8 120 73-205 19-168 (301)
201 2hf9_A Probable hydrogenase ni 98.9 3.7E-09 1.3E-13 106.7 10.5 127 70-205 36-177 (226)
202 2xxa_A Signal recognition part 98.9 1.3E-08 4.5E-13 112.8 15.4 222 70-320 98-349 (433)
203 2qag_C Septin-7; cell cycle, c 98.9 5.1E-09 1.7E-13 115.4 11.5 119 73-205 32-180 (418)
204 3kl4_A SRP54, signal recogniti 98.8 5.5E-08 1.9E-12 107.3 16.1 218 71-318 96-346 (433)
205 2v3c_C SRP54, signal recogniti 98.7 4.1E-08 1.4E-12 108.8 10.1 149 71-224 98-268 (432)
206 3ec1_A YQEH GTPase; atnos1, at 98.6 2.4E-09 8.4E-14 116.7 -1.1 133 73-223 163-306 (369)
207 3h2y_A GTPase family protein; 98.6 6.5E-09 2.2E-13 113.2 1.7 133 73-223 161-305 (368)
208 1cip_A Protein (guanine nucleo 98.6 2.8E-08 9.7E-13 107.2 6.6 79 126-204 179-272 (353)
209 1zcb_A G alpha I/13; GTP-bindi 98.6 8.9E-08 3E-12 103.7 8.3 78 127-204 188-280 (362)
210 1tq4_A IIGP1, interferon-induc 98.5 1E-06 3.4E-11 96.8 16.1 111 73-204 70-187 (413)
211 2ohf_A Protein OLA1, GTP-bindi 98.5 1E-07 3.5E-12 103.7 7.2 82 73-175 23-128 (396)
212 2qag_B Septin-6, protein NEDD5 98.5 3.9E-07 1.3E-11 100.0 11.1 136 70-223 40-208 (427)
213 3dm5_A SRP54, signal recogniti 98.5 7.1E-06 2.4E-10 90.5 20.3 133 71-205 99-252 (443)
214 3e1y_E Eukaryotic peptide chai 98.5 3.1E-07 1.1E-11 91.3 8.5 84 369-457 3-91 (204)
215 3sop_A Neuronal-specific septi 98.4 1.6E-06 5.5E-11 90.1 11.7 137 73-220 3-169 (270)
216 3ohm_A Guanine nucleotide-bind 98.3 8.5E-07 2.9E-11 94.3 8.2 80 125-204 152-246 (327)
217 4fid_A G protein alpha subunit 98.3 9.1E-07 3.1E-11 94.5 8.4 82 124-205 145-241 (340)
218 1azs_C GS-alpha; complex (lyas 98.3 9.6E-07 3.3E-11 96.5 7.8 78 127-204 204-296 (402)
219 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2E-06 6.7E-11 93.9 9.2 84 72-175 20-127 (392)
220 1u0l_A Probable GTPase ENGC; p 98.2 9.2E-07 3.1E-11 93.5 5.4 63 141-205 64-128 (301)
221 2xtz_A Guanine nucleotide-bind 98.2 1.6E-06 5.4E-11 93.6 7.1 67 138-204 181-262 (354)
222 1puj_A YLQF, conserved hypothe 98.1 2.6E-06 8.8E-11 89.1 6.9 59 145-205 4-63 (282)
223 1j8m_F SRP54, signal recogniti 98.1 3.3E-06 1.1E-10 89.0 7.2 144 72-222 98-267 (297)
224 1f5n_A Interferon-induced guan 98.1 2.7E-06 9.1E-11 97.3 5.9 105 70-192 36-149 (592)
225 3l82_B F-box only protein 4; T 98.0 1.5E-05 5.2E-10 78.2 9.3 67 141-207 97-178 (227)
226 4dzz_A Plasmid partitioning pr 98.0 4.1E-05 1.4E-09 75.4 12.4 82 139-224 75-161 (206)
227 3ec1_A YQEH GTPase; atnos1, at 97.8 3.5E-05 1.2E-09 83.8 9.3 62 142-206 51-112 (369)
228 3l2o_B F-box only protein 4; s 97.8 6.4E-05 2.2E-09 77.4 9.9 61 148-208 195-264 (312)
229 2yv5_A YJEQ protein; hydrolase 97.8 1.3E-05 4.4E-10 84.7 4.5 56 150-205 66-123 (302)
230 3cnl_A YLQF, putative uncharac 97.7 1.1E-05 3.9E-10 83.3 3.0 55 147-205 4-59 (262)
231 3cwq_A Para family chromosome 97.6 0.0005 1.7E-08 68.2 12.8 83 138-223 66-151 (209)
232 1puj_A YLQF, conserved hypothe 97.6 5.6E-05 1.9E-09 78.9 5.8 59 71-152 119-177 (282)
233 1zu4_A FTSY; GTPase, signal re 97.6 0.00025 8.4E-09 75.3 10.7 80 138-224 190-284 (320)
234 3h2y_A GTPase family protein; 97.5 0.00011 3.8E-09 79.7 7.7 55 150-206 56-110 (368)
235 2ffh_A Protein (FFH); SRP54, s 97.5 0.00024 8.4E-09 78.1 9.6 148 71-224 97-267 (425)
236 3kjh_A CO dehydrogenase/acetyl 97.5 0.00047 1.6E-08 69.9 10.8 86 138-230 130-216 (254)
237 3e70_C DPA, signal recognition 97.4 0.00026 8.8E-09 75.4 8.7 129 71-205 128-281 (328)
238 3szr_A Interferon-induced GTP- 97.4 0.00035 1.2E-08 80.9 9.7 68 140-207 147-229 (608)
239 2oze_A ORF delta'; para, walke 97.4 0.00061 2.1E-08 71.4 10.7 82 139-222 154-242 (298)
240 2yhs_A FTSY, cell division pro 97.4 0.00043 1.5E-08 77.0 9.7 144 71-223 292-467 (503)
241 1vma_A Cell division protein F 97.3 0.00054 1.8E-08 72.2 9.6 148 71-225 103-280 (306)
242 3end_A Light-independent proto 97.2 0.0021 7.2E-08 67.6 13.1 86 138-230 155-245 (307)
243 1ls1_A Signal recognition part 97.2 0.0006 2.1E-08 71.5 8.0 147 71-224 97-267 (295)
244 3cnl_A YLQF, putative uncharac 97.2 0.00017 5.8E-09 74.4 3.7 58 73-153 100-157 (262)
245 1rj9_A FTSY, signal recognitio 97.2 0.0015 5.1E-08 68.8 10.6 149 71-224 101-277 (304)
246 2px0_A Flagellar biosynthesis 97.0 0.00087 3E-08 70.3 7.3 129 71-205 104-252 (296)
247 3q5d_A Atlastin-1; G protein, 96.8 0.0031 1.1E-07 69.6 10.1 26 70-95 65-90 (447)
248 1xe1_A Hypothetical protein PF 96.8 0.0044 1.5E-07 54.3 8.9 76 371-453 33-113 (116)
249 3bfv_A CAPA1, CAPB2, membrane 96.8 0.0035 1.2E-07 64.8 9.4 66 139-205 191-257 (271)
250 2xj4_A MIPZ; replication, cell 96.8 0.0013 4.5E-08 68.5 6.0 82 139-222 103-212 (286)
251 3ea0_A ATPase, para family; al 96.7 0.029 1E-06 56.3 15.9 81 139-224 118-201 (245)
252 3k9g_A PF-32 protein; ssgcid, 96.7 0.0053 1.8E-07 63.0 10.3 65 138-204 143-209 (267)
253 3q9l_A Septum site-determining 96.7 0.0025 8.7E-08 64.9 7.3 84 139-224 113-207 (260)
254 2cve_A Hypothetical protein TT 96.6 0.012 4E-07 56.7 11.1 111 620-732 80-190 (191)
255 3cio_A ETK, tyrosine-protein k 96.6 0.0058 2E-07 64.1 9.9 65 140-205 214-279 (299)
256 1t9h_A YLOQ, probable GTPase E 96.6 0.001 3.4E-08 70.0 3.9 47 160-206 83-131 (307)
257 3la6_A Tyrosine-protein kinase 96.4 0.014 4.7E-07 60.8 11.1 66 140-206 202-268 (286)
258 2ph1_A Nucleotide-binding prot 96.4 0.0077 2.6E-07 61.7 9.0 88 138-225 127-223 (262)
259 3b9q_A Chloroplast SRP recepto 96.2 0.017 5.8E-07 60.6 10.4 128 71-205 99-259 (302)
260 1vi7_A Hypothetical protein YI 96.2 0.01 3.5E-07 58.3 8.0 112 620-733 92-203 (217)
261 1wcv_1 SOJ, segregation protei 96.2 0.015 5.1E-07 59.3 9.7 85 138-224 110-201 (257)
262 2afh_E Nitrogenase iron protei 96.1 0.029 1E-06 58.1 11.7 85 139-225 118-208 (289)
263 1cp2_A CP2, nitrogenase iron p 96.1 0.039 1.3E-06 56.3 12.1 85 139-225 115-205 (269)
264 2og2_A Putative signal recogni 95.8 0.045 1.5E-06 58.7 11.4 129 71-205 156-316 (359)
265 1hyq_A MIND, cell division inh 95.7 0.021 7.3E-07 58.1 8.3 82 139-224 110-192 (263)
266 2rcn_A Probable GTPase ENGC; Y 95.5 0.029 9.9E-07 60.1 8.3 45 161-206 128-174 (358)
267 1t9h_A YLOQ, probable GTPase E 95.4 0.0041 1.4E-07 65.4 1.6 21 73-93 174-194 (307)
268 1g3q_A MIND ATPase, cell divis 95.4 0.034 1.1E-06 55.6 8.2 81 139-223 111-192 (237)
269 2yv5_A YJEQ protein; hydrolase 95.2 0.019 6.4E-07 60.3 5.8 21 73-93 166-186 (302)
270 1d1n_A Initiation factor 2; be 95.2 0.045 1.5E-06 46.6 7.0 73 376-452 10-89 (99)
271 1byi_A Dethiobiotin synthase; 94.6 0.19 6.5E-06 49.5 11.0 94 138-232 107-206 (224)
272 2rcn_A Probable GTPase ENGC; Y 94.5 0.016 5.4E-07 62.1 3.0 22 73-94 216-237 (358)
273 3ug7_A Arsenical pump-driving 94.5 0.28 9.4E-06 52.4 12.7 67 164-231 237-314 (349)
274 1bif_A 6-phosphofructo-2-kinas 94.1 0.013 4.5E-07 65.4 1.5 107 72-198 39-155 (469)
275 1u0l_A Probable GTPase ENGC; p 93.7 0.036 1.2E-06 58.1 3.6 21 73-93 170-190 (301)
276 4ido_A Atlastin-1; GTPase, GTP 93.6 0.22 7.6E-06 54.6 9.9 114 70-189 65-194 (457)
277 3zq6_A Putative arsenical pump 93.6 0.36 1.2E-05 50.8 11.3 59 165-223 223-292 (324)
278 3lh2_S 4E10_1VI7A_S0_002_N (T8 93.3 0.064 2.2E-06 43.6 3.8 63 669-732 8-70 (76)
279 1ye8_A Protein THEP1, hypothet 93.2 0.045 1.5E-06 52.5 3.3 24 74-97 2-25 (178)
280 1lvg_A Guanylate kinase, GMP k 93.0 0.043 1.5E-06 53.6 2.8 23 73-95 5-27 (198)
281 2crv_A IF-2MT, translation ini 93.0 0.28 9.7E-06 43.2 7.7 71 376-452 17-97 (120)
282 1kgd_A CASK, peripheral plasma 93.0 0.051 1.8E-06 52.0 3.3 23 73-95 6-28 (180)
283 3iqw_A Tail-anchored protein t 92.7 1.1 3.8E-05 47.3 13.6 58 165-222 223-293 (334)
284 2yvu_A Probable adenylyl-sulfa 92.7 0.65 2.2E-05 44.2 10.7 25 71-95 12-36 (186)
285 3ez9_A Para; DNA binding, wing 92.3 0.19 6.4E-06 54.8 7.1 90 138-230 246-347 (403)
286 3a00_A Guanylate kinase, GMP k 92.3 0.061 2.1E-06 51.8 2.8 22 74-95 3-24 (186)
287 3zvl_A Bifunctional polynucleo 92.2 0.43 1.5E-05 52.2 9.8 26 71-96 257-282 (416)
288 1knq_A Gluconate kinase; ALFA/ 92.0 0.11 3.9E-06 49.0 4.3 27 72-98 8-34 (175)
289 3ney_A 55 kDa erythrocyte memb 92.0 0.1 3.5E-06 50.9 3.9 26 71-96 18-43 (197)
290 3kb2_A SPBC2 prophage-derived 92.0 0.093 3.2E-06 49.2 3.6 25 73-97 2-26 (173)
291 3tr0_A Guanylate kinase, GMP k 91.9 0.077 2.6E-06 51.5 3.1 24 73-96 8-31 (205)
292 1zp6_A Hypothetical protein AT 91.9 0.093 3.2E-06 50.3 3.6 23 72-94 9-31 (191)
293 1znw_A Guanylate kinase, GMP k 91.8 0.08 2.8E-06 51.8 3.1 23 73-95 21-43 (207)
294 1kag_A SKI, shikimate kinase I 91.8 0.091 3.1E-06 49.5 3.4 25 73-97 5-29 (173)
295 4eun_A Thermoresistant glucoki 91.6 0.11 3.9E-06 50.4 3.8 29 71-99 28-56 (200)
296 1np6_A Molybdopterin-guanine d 91.5 0.12 4.2E-06 49.3 3.8 24 72-95 6-29 (174)
297 3c8u_A Fructokinase; YP_612366 91.4 0.11 3.9E-06 50.8 3.7 24 71-94 21-44 (208)
298 1z6g_A Guanylate kinase; struc 91.3 0.097 3.3E-06 51.9 3.1 23 73-95 24-46 (218)
299 3sr0_A Adenylate kinase; phosp 91.3 0.11 3.8E-06 51.1 3.4 26 74-99 2-27 (206)
300 1ex7_A Guanylate kinase; subst 91.2 0.11 3.6E-06 50.3 3.1 24 73-96 2-25 (186)
301 3lw7_A Adenylate kinase relate 91.2 0.13 4.5E-06 48.0 3.7 25 73-98 2-26 (179)
302 4gp7_A Metallophosphoesterase; 91.2 0.1 3.5E-06 49.5 2.9 21 73-93 10-30 (171)
303 2cvh_A DNA repair and recombin 91.1 0.98 3.4E-05 43.9 10.2 21 74-94 22-42 (220)
304 1xjc_A MOBB protein homolog; s 91.0 0.14 4.7E-06 48.7 3.6 24 71-94 3-26 (169)
305 1s96_A Guanylate kinase, GMP k 90.9 0.11 3.8E-06 51.5 3.1 25 72-96 16-40 (219)
306 3tau_A Guanylate kinase, GMP k 90.9 0.14 4.8E-06 50.2 3.7 25 72-96 8-32 (208)
307 1htw_A HI0065; nucleotide-bind 90.8 0.12 4.2E-06 48.4 3.1 23 73-95 34-56 (158)
308 3vaa_A Shikimate kinase, SK; s 90.7 0.16 5.5E-06 49.2 4.0 27 71-97 24-50 (199)
309 3io3_A DEHA2D07832P; chaperone 90.7 2.4 8.4E-05 44.9 13.5 57 165-221 232-302 (348)
310 3trf_A Shikimate kinase, SK; a 90.6 0.16 5.5E-06 48.4 3.8 26 72-97 5-30 (185)
311 2bdt_A BH3686; alpha-beta prot 90.6 0.15 5E-06 48.9 3.5 21 74-94 4-24 (189)
312 3asz_A Uridine kinase; cytidin 90.5 0.16 5.4E-06 49.6 3.8 24 72-95 6-29 (211)
313 2j41_A Guanylate kinase; GMP, 90.5 0.14 4.8E-06 49.6 3.4 23 73-95 7-29 (207)
314 2qor_A Guanylate kinase; phosp 90.4 0.14 4.7E-06 49.9 3.2 26 71-96 11-36 (204)
315 3t61_A Gluconokinase; PSI-biol 90.4 0.15 5.1E-06 49.5 3.4 27 72-98 18-44 (202)
316 2bbw_A Adenylate kinase 4, AK4 90.4 0.17 5.7E-06 51.0 3.8 28 72-99 27-54 (246)
317 2ghi_A Transport protein; mult 90.4 0.17 5.9E-06 51.6 4.0 21 73-93 47-67 (260)
318 4a1f_A DNAB helicase, replicat 90.2 0.36 1.2E-05 51.1 6.4 22 74-95 48-69 (338)
319 2f1r_A Molybdopterin-guanine d 90.1 0.087 3E-06 50.2 1.4 22 73-94 3-24 (171)
320 1ly1_A Polynucleotide kinase; 90.0 0.16 5.6E-06 47.8 3.3 22 73-94 3-24 (181)
321 3tif_A Uncharacterized ABC tra 89.9 0.14 4.9E-06 51.3 2.9 21 73-93 32-52 (235)
322 3fgn_A Dethiobiotin synthetase 89.9 7.4 0.00025 39.1 15.7 65 139-203 126-197 (251)
323 1ukz_A Uridylate kinase; trans 89.8 0.24 8.2E-06 48.0 4.4 28 71-98 14-41 (203)
324 2pcj_A ABC transporter, lipopr 89.8 0.16 5.4E-06 50.6 3.0 21 73-93 31-51 (224)
325 1cke_A CK, MSSA, protein (cyti 89.8 0.2 6.7E-06 49.4 3.7 25 73-97 6-30 (227)
326 2if2_A Dephospho-COA kinase; a 89.8 0.17 5.8E-06 49.1 3.2 22 73-94 2-23 (204)
327 1jjv_A Dephospho-COA kinase; P 89.7 0.18 6.1E-06 49.1 3.3 22 73-94 3-24 (206)
328 1nks_A Adenylate kinase; therm 89.6 0.19 6.5E-06 47.9 3.4 23 73-95 2-24 (194)
329 1qhx_A CPT, protein (chloramph 89.6 0.21 7.2E-06 47.1 3.7 25 73-97 4-28 (178)
330 3iij_A Coilin-interacting nucl 89.6 0.22 7.4E-06 47.3 3.7 27 71-97 10-36 (180)
331 2jaq_A Deoxyguanosine kinase; 89.4 0.22 7.5E-06 48.0 3.7 24 74-97 2-25 (205)
332 2onk_A Molybdate/tungstate ABC 89.4 0.18 6E-06 50.9 3.0 21 73-93 25-45 (240)
333 3fb4_A Adenylate kinase; psych 89.4 0.22 7.7E-06 48.7 3.8 25 74-98 2-26 (216)
334 1uf9_A TT1252 protein; P-loop, 89.4 0.27 9.1E-06 47.4 4.3 25 71-95 7-31 (203)
335 2jeo_A Uridine-cytidine kinase 89.4 0.25 8.4E-06 49.7 4.1 26 72-97 25-50 (245)
336 3ec2_A DNA replication protein 89.3 0.18 6.1E-06 47.9 3.0 23 72-94 38-60 (180)
337 2rhm_A Putative kinase; P-loop 89.3 0.27 9.4E-06 46.9 4.3 26 72-97 5-30 (193)
338 3cm0_A Adenylate kinase; ATP-b 89.3 0.25 8.4E-06 47.0 4.0 25 73-97 5-29 (186)
339 3dl0_A Adenylate kinase; phosp 89.3 0.23 8E-06 48.6 3.8 25 74-98 2-26 (216)
340 2vhj_A Ntpase P4, P4; non- hyd 89.2 0.55 1.9E-05 49.2 6.7 23 73-95 124-146 (331)
341 1via_A Shikimate kinase; struc 89.2 0.21 7.3E-06 47.1 3.4 25 73-97 5-29 (175)
342 1y63_A LMAJ004144AAA protein; 89.2 0.27 9.2E-06 47.0 4.1 25 71-95 9-33 (184)
343 2v9p_A Replication protein E1; 89.1 0.2 6.8E-06 52.3 3.2 25 71-95 125-149 (305)
344 3b85_A Phosphate starvation-in 89.0 0.17 5.8E-06 49.8 2.6 21 74-94 24-44 (208)
345 2i3b_A HCR-ntpase, human cance 88.9 0.23 7.8E-06 48.1 3.3 22 74-95 3-24 (189)
346 2c95_A Adenylate kinase 1; tra 88.8 0.3 1E-05 46.7 4.2 27 71-97 8-34 (196)
347 3fwy_A Light-independent proto 88.7 2 7E-05 44.8 10.8 87 138-231 162-253 (314)
348 2bwj_A Adenylate kinase 5; pho 88.7 0.19 6.4E-06 48.4 2.6 26 72-97 12-37 (199)
349 3uie_A Adenylyl-sulfate kinase 88.7 0.26 8.8E-06 47.8 3.6 26 70-95 23-48 (200)
350 2eyu_A Twitching motility prot 88.7 0.23 7.8E-06 50.7 3.4 24 71-94 24-47 (261)
351 3lnc_A Guanylate kinase, GMP k 88.6 0.15 5.1E-06 50.8 1.9 22 72-93 27-48 (231)
352 2cbz_A Multidrug resistance-as 88.6 0.2 7E-06 50.3 2.9 21 73-93 32-52 (237)
353 1b0u_A Histidine permease; ABC 88.6 0.2 6.8E-06 51.2 2.9 21 73-93 33-53 (262)
354 4g1u_C Hemin import ATP-bindin 88.6 0.2 7E-06 51.2 2.9 21 73-93 38-58 (266)
355 2qt1_A Nicotinamide riboside k 88.6 0.28 9.4E-06 47.8 3.8 25 71-95 20-44 (207)
356 2d2e_A SUFC protein; ABC-ATPas 88.6 0.21 7.3E-06 50.5 3.1 21 73-93 30-50 (250)
357 1g6h_A High-affinity branched- 88.6 0.21 7E-06 50.9 2.9 21 73-93 34-54 (257)
358 3gfo_A Cobalt import ATP-bindi 88.5 0.2 7E-06 51.5 2.9 21 73-93 35-55 (275)
359 2pze_A Cystic fibrosis transme 88.5 0.21 7.2E-06 49.9 2.9 21 73-93 35-55 (229)
360 1kht_A Adenylate kinase; phosp 88.5 0.24 8.1E-06 47.2 3.2 23 73-95 4-26 (192)
361 1ihu_A Arsenical pump-driving 88.5 1.4 4.8E-05 50.4 10.2 139 65-203 1-238 (589)
362 2wbm_A MTHSBDS, ribosome matur 88.5 0.91 3.1E-05 45.4 7.4 69 665-734 181-250 (252)
363 1tev_A UMP-CMP kinase; ploop, 88.4 0.3 1E-05 46.5 3.9 25 73-97 4-28 (196)
364 1sgw_A Putative ABC transporte 88.4 0.22 7.4E-06 49.3 2.9 20 74-93 37-56 (214)
365 4fcw_A Chaperone protein CLPB; 88.4 2.2 7.6E-05 43.9 10.9 24 72-95 47-70 (311)
366 2ehv_A Hypothetical protein PH 88.4 0.22 7.7E-06 49.7 3.0 21 73-93 31-51 (251)
367 1mv5_A LMRA, multidrug resista 88.3 0.23 8E-06 50.0 3.1 22 72-93 28-49 (243)
368 2ff7_A Alpha-hemolysin translo 88.3 0.22 7.5E-06 50.4 2.9 21 73-93 36-56 (247)
369 1ji0_A ABC transporter; ATP bi 88.3 0.22 7.6E-06 50.1 2.9 21 73-93 33-53 (240)
370 1zuh_A Shikimate kinase; alpha 88.2 0.31 1E-05 45.6 3.7 27 71-97 6-32 (168)
371 1nij_A Hypothetical protein YJ 88.2 0.25 8.7E-06 51.9 3.4 25 71-95 3-27 (318)
372 2cdn_A Adenylate kinase; phosp 88.2 0.34 1.2E-05 46.9 4.1 26 72-97 20-45 (201)
373 4a74_A DNA repair and recombin 88.1 0.25 8.6E-06 48.6 3.2 22 73-94 26-47 (231)
374 3aez_A Pantothenate kinase; tr 88.1 0.3 1E-05 51.2 3.9 25 70-94 88-112 (312)
375 3fkq_A NTRC-like two-domain pr 88.0 1.2 4.2E-05 47.7 8.8 36 138-175 258-293 (373)
376 2olj_A Amino acid ABC transpor 88.0 0.23 7.9E-06 50.7 2.9 22 72-93 50-71 (263)
377 2zu0_C Probable ATP-dependent 88.0 0.24 8.3E-06 50.7 3.0 21 73-93 47-67 (267)
378 1qf9_A UMP/CMP kinase, protein 87.9 0.39 1.3E-05 45.7 4.3 26 72-97 6-31 (194)
379 3ez2_A Plasmid partition prote 87.9 0.71 2.4E-05 50.0 6.9 91 138-231 243-345 (398)
380 3umf_A Adenylate kinase; rossm 87.9 0.39 1.3E-05 47.5 4.3 30 70-99 27-56 (217)
381 2r8r_A Sensor protein; KDPD, P 87.8 1.3 4.3E-05 44.0 8.0 22 73-94 7-28 (228)
382 2qi9_C Vitamin B12 import ATP- 87.7 0.25 8.5E-06 50.0 2.9 21 73-93 27-47 (249)
383 2kjq_A DNAA-related protein; s 87.7 0.27 9.1E-06 45.5 2.8 24 72-95 36-59 (149)
384 1zd8_A GTP:AMP phosphotransfer 87.7 0.35 1.2E-05 47.8 4.0 26 72-97 7-32 (227)
385 2plr_A DTMP kinase, probable t 87.7 0.36 1.2E-05 46.8 3.9 25 73-97 5-29 (213)
386 1vpl_A ABC transporter, ATP-bi 87.6 0.25 8.7E-06 50.2 2.9 21 73-93 42-62 (256)
387 2iyv_A Shikimate kinase, SK; t 87.6 0.29 1E-05 46.5 3.2 24 74-97 4-27 (184)
388 2wwf_A Thymidilate kinase, put 87.5 0.33 1.1E-05 47.1 3.6 24 72-95 10-33 (212)
389 3tlx_A Adenylate kinase 2; str 87.5 0.41 1.4E-05 48.1 4.3 29 70-98 27-55 (243)
390 1aky_A Adenylate kinase; ATP:A 87.5 0.38 1.3E-05 47.3 4.0 26 72-97 4-29 (220)
391 4e22_A Cytidylate kinase; P-lo 87.4 0.35 1.2E-05 48.9 3.8 27 72-98 27-53 (252)
392 2ixe_A Antigen peptide transpo 87.4 0.27 9.1E-06 50.5 2.9 21 73-93 46-66 (271)
393 2yz2_A Putative ABC transporte 87.3 0.27 9.3E-06 50.3 2.9 21 73-93 34-54 (266)
394 1zo1_I IF2, translation initia 87.3 1.7 5.7E-05 48.6 9.5 73 377-453 413-492 (501)
395 1e4v_A Adenylate kinase; trans 87.2 0.39 1.3E-05 47.0 3.9 24 74-97 2-25 (214)
396 2ihy_A ABC transporter, ATP-bi 87.2 0.27 9.4E-06 50.6 2.9 21 73-93 48-68 (279)
397 2v54_A DTMP kinase, thymidylat 87.2 0.31 1E-05 47.1 3.1 23 73-95 5-27 (204)
398 1uj2_A Uridine-cytidine kinase 87.2 0.41 1.4E-05 48.3 4.1 28 70-97 20-47 (252)
399 2pt5_A Shikimate kinase, SK; a 87.1 0.38 1.3E-05 44.8 3.6 24 74-97 2-25 (168)
400 2nq2_C Hypothetical ABC transp 87.1 0.28 9.6E-06 49.8 2.8 20 74-93 33-52 (253)
401 1zak_A Adenylate kinase; ATP:A 87.0 0.38 1.3E-05 47.3 3.8 25 73-97 6-30 (222)
402 1t95_A Hypothetical protein AF 87.0 0.9 3.1E-05 45.1 6.3 67 667-734 168-235 (240)
403 3tqc_A Pantothenate kinase; bi 87.0 0.36 1.2E-05 50.8 3.7 25 71-95 91-115 (321)
404 1e6c_A Shikimate kinase; phosp 87.0 0.34 1.2E-05 45.3 3.3 25 73-97 3-27 (173)
405 1rz3_A Hypothetical protein rb 86.9 0.4 1.4E-05 46.6 3.7 24 71-94 21-44 (201)
406 2kdo_A Ribosome maturation pro 86.8 0.24 8.3E-06 49.7 2.1 67 667-734 172-238 (252)
407 2gza_A Type IV secretion syste 86.8 0.3 1E-05 52.4 3.0 23 72-94 175-197 (361)
408 2pbr_A DTMP kinase, thymidylat 86.6 0.36 1.2E-05 46.0 3.2 21 74-94 2-22 (195)
409 1nn5_A Similar to deoxythymidy 86.5 0.4 1.4E-05 46.6 3.5 23 72-94 9-31 (215)
410 3kta_A Chromosome segregation 86.5 0.38 1.3E-05 45.6 3.3 23 74-96 28-50 (182)
411 2ze6_A Isopentenyl transferase 86.5 0.42 1.5E-05 48.3 3.8 26 73-98 2-27 (253)
412 1odf_A YGR205W, hypothetical 3 86.5 0.44 1.5E-05 49.4 4.0 25 70-94 29-53 (290)
413 2vli_A Antibiotic resistance p 86.4 0.34 1.2E-05 45.8 2.9 25 73-97 6-30 (183)
414 3of5_A Dethiobiotin synthetase 86.4 2.2 7.5E-05 42.3 9.0 87 138-224 109-201 (228)
415 3tui_C Methionine import ATP-b 86.3 0.34 1.2E-05 51.9 3.0 21 73-93 55-75 (366)
416 3jvv_A Twitching mobility prot 86.2 0.41 1.4E-05 51.1 3.6 22 73-94 124-145 (356)
417 3fvq_A Fe(3+) IONS import ATP- 86.1 0.36 1.2E-05 51.5 3.2 21 73-93 31-51 (359)
418 3gd7_A Fusion complex of cysti 86.0 0.49 1.7E-05 51.1 4.2 21 73-93 48-68 (390)
419 2x8a_A Nuclear valosin-contain 86.0 0.47 1.6E-05 48.7 3.8 25 73-97 45-69 (274)
420 1gtv_A TMK, thymidylate kinase 85.9 0.23 7.8E-06 48.4 1.4 22 74-95 2-23 (214)
421 1sq5_A Pantothenate kinase; P- 85.9 0.47 1.6E-05 49.5 3.9 26 70-95 78-103 (308)
422 1gvn_B Zeta; postsegregational 85.9 0.49 1.7E-05 48.9 4.0 26 71-96 32-57 (287)
423 3nwj_A ATSK2; P loop, shikimat 85.9 0.42 1.4E-05 48.4 3.4 26 72-97 48-73 (250)
424 2pez_A Bifunctional 3'-phospho 85.9 0.43 1.5E-05 45.2 3.3 23 73-95 6-28 (179)
425 2pt7_A CAG-ALFA; ATPase, prote 85.8 0.29 9.9E-06 51.8 2.2 22 73-94 172-193 (330)
426 2pjz_A Hypothetical protein ST 85.8 0.39 1.3E-05 49.0 3.1 20 74-93 32-51 (263)
427 2bbs_A Cystic fibrosis transme 85.8 0.38 1.3E-05 49.9 3.0 22 72-93 64-85 (290)
428 3bgw_A DNAB-like replicative h 85.7 1.3 4.5E-05 48.8 7.5 23 73-95 198-220 (444)
429 2z0h_A DTMP kinase, thymidylat 85.7 0.39 1.3E-05 46.0 2.9 22 74-95 2-23 (197)
430 3a4m_A L-seryl-tRNA(SEC) kinas 85.5 0.46 1.6E-05 48.3 3.5 24 72-95 4-27 (260)
431 3n70_A Transport activator; si 85.5 1.4 4.7E-05 40.2 6.4 23 72-94 24-46 (145)
432 1jbk_A CLPB protein; beta barr 85.5 0.51 1.7E-05 44.3 3.6 25 71-95 42-66 (195)
433 1vht_A Dephospho-COA kinase; s 85.4 0.5 1.7E-05 46.3 3.6 22 73-94 5-26 (218)
434 1lw7_A Transcriptional regulat 85.4 0.36 1.2E-05 51.7 2.8 24 72-95 170-193 (365)
435 1ak2_A Adenylate kinase isoenz 85.3 0.58 2E-05 46.5 4.1 27 71-97 15-41 (233)
436 1u94_A RECA protein, recombina 85.2 0.79 2.7E-05 48.9 5.3 24 72-95 63-86 (356)
437 1z47_A CYSA, putative ABC-tran 85.2 0.41 1.4E-05 51.0 3.1 21 73-93 42-62 (355)
438 2ewv_A Twitching motility prot 85.2 0.47 1.6E-05 51.1 3.5 24 71-94 135-158 (372)
439 3izy_P Translation initiation 85.1 2.1 7.1E-05 48.2 8.9 75 374-452 449-534 (537)
440 2yyz_A Sugar ABC transporter, 85.1 0.42 1.4E-05 51.1 3.1 21 73-93 30-50 (359)
441 1ixz_A ATP-dependent metallopr 85.0 0.53 1.8E-05 47.3 3.7 24 73-96 50-73 (254)
442 3nh6_A ATP-binding cassette SU 85.0 0.29 1E-05 51.1 1.7 22 72-93 80-101 (306)
443 2p5t_B PEZT; postsegregational 84.9 0.47 1.6E-05 48.0 3.2 27 71-97 31-57 (253)
444 2f6r_A COA synthase, bifunctio 84.8 0.56 1.9E-05 48.2 3.8 24 70-93 73-96 (281)
445 2it1_A 362AA long hypothetical 84.7 0.45 1.5E-05 51.0 3.0 21 73-93 30-50 (362)
446 2xb4_A Adenylate kinase; ATP-b 84.7 0.58 2E-05 46.2 3.7 24 74-97 2-25 (223)
447 1sxj_A Activator 1 95 kDa subu 84.6 3.4 0.00012 46.3 10.5 27 71-97 76-102 (516)
448 3rlf_A Maltose/maltodextrin im 84.6 0.45 1.6E-05 51.2 3.0 21 73-93 30-50 (381)
449 2zr9_A Protein RECA, recombina 84.6 0.73 2.5E-05 49.0 4.7 24 72-95 61-84 (349)
450 1g29_1 MALK, maltose transport 84.5 0.46 1.6E-05 51.1 3.1 21 73-93 30-50 (372)
451 1f2t_A RAD50 ABC-ATPase; DNA d 84.5 0.55 1.9E-05 43.4 3.2 22 74-95 25-46 (149)
452 3be4_A Adenylate kinase; malar 84.4 0.64 2.2E-05 45.6 3.9 25 73-97 6-30 (217)
453 2grj_A Dephospho-COA kinase; T 84.4 0.71 2.4E-05 44.6 4.1 27 71-97 11-37 (192)
454 1v43_A Sugar-binding transport 84.4 0.47 1.6E-05 51.0 3.0 21 73-93 38-58 (372)
455 2oap_1 GSPE-2, type II secreti 84.3 0.4 1.4E-05 53.9 2.5 24 71-94 259-282 (511)
456 2b8t_A Thymidine kinase; deoxy 84.3 0.74 2.5E-05 45.7 4.2 42 165-206 89-130 (223)
457 1q3t_A Cytidylate kinase; nucl 84.3 0.7 2.4E-05 46.0 4.1 29 69-97 13-41 (236)
458 2v1u_A Cell division control p 84.2 2.3 7.7E-05 45.1 8.5 26 70-95 42-67 (387)
459 2axn_A 6-phosphofructo-2-kinas 84.0 2.3 7.8E-05 47.8 8.6 24 72-95 35-58 (520)
460 2w0m_A SSO2452; RECA, SSPF, un 83.6 0.66 2.3E-05 45.4 3.6 22 73-94 24-45 (235)
461 3pfi_A Holliday junction ATP-d 83.3 3 0.0001 43.5 8.8 26 70-95 53-78 (338)
462 1p9r_A General secretion pathw 83.2 0.66 2.3E-05 50.7 3.6 24 72-95 167-190 (418)
463 1iy2_A ATP-dependent metallopr 83.2 0.71 2.4E-05 47.2 3.7 24 73-96 74-97 (278)
464 1in4_A RUVB, holliday junction 83.2 0.67 2.3E-05 48.9 3.6 27 71-97 50-76 (334)
465 1m7g_A Adenylylsulfate kinase; 83.1 0.66 2.2E-05 45.3 3.3 24 71-94 24-47 (211)
466 3r20_A Cytidylate kinase; stru 83.0 0.78 2.7E-05 45.8 3.8 26 73-98 10-35 (233)
467 1hqc_A RUVB; extended AAA-ATPa 82.9 4.2 0.00014 42.0 9.7 25 71-95 37-61 (324)
468 2vp4_A Deoxynucleoside kinase; 82.9 0.56 1.9E-05 46.6 2.7 25 71-95 19-43 (230)
469 1q57_A DNA primase/helicase; d 82.9 0.8 2.7E-05 51.3 4.3 24 73-96 243-266 (503)
470 3d31_A Sulfate/molybdate ABC t 82.7 0.41 1.4E-05 50.9 1.7 21 73-93 27-47 (348)
471 2p65_A Hypothetical protein PF 82.5 0.66 2.2E-05 43.5 3.0 25 71-95 42-66 (187)
472 2w58_A DNAI, primosome compone 82.5 0.79 2.7E-05 44.1 3.6 23 73-95 55-77 (202)
473 1lv7_A FTSH; alpha/beta domain 82.4 0.8 2.7E-05 46.1 3.7 25 72-96 45-69 (257)
474 3ake_A Cytidylate kinase; CMP 82.2 0.84 2.9E-05 44.0 3.6 24 74-97 4-27 (208)
475 1cr0_A DNA primase/helicase; R 82.1 0.76 2.6E-05 47.4 3.5 22 73-94 36-57 (296)
476 3bos_A Putative DNA replicatio 82.0 0.82 2.8E-05 44.9 3.5 25 71-95 51-75 (242)
477 1xp8_A RECA protein, recombina 81.9 1 3.6E-05 48.1 4.6 23 73-95 75-97 (366)
478 3qf7_A RAD50; ABC-ATPase, ATPa 81.7 0.72 2.5E-05 49.4 3.2 22 74-95 25-46 (365)
479 4eaq_A DTMP kinase, thymidylat 81.7 1 3.6E-05 44.7 4.2 26 71-96 25-50 (229)
480 1ojl_A Transcriptional regulat 81.4 35 0.0012 34.9 16.1 24 72-95 25-48 (304)
481 1oxx_K GLCV, glucose, ABC tran 81.2 0.41 1.4E-05 51.1 1.0 21 73-93 32-52 (353)
482 2npi_A Protein CLP1; CLP1-PCF1 81.1 0.79 2.7E-05 50.7 3.3 23 72-94 138-160 (460)
483 3hr8_A Protein RECA; alpha and 81.0 1.5 5.2E-05 46.7 5.4 24 72-95 61-84 (356)
484 1svm_A Large T antigen; AAA+ f 81.0 0.91 3.1E-05 48.8 3.7 25 71-95 168-192 (377)
485 3io5_A Recombination and repai 80.5 8.5 0.00029 40.2 10.6 21 75-95 31-51 (333)
486 2obl_A ESCN; ATPase, hydrolase 80.4 0.99 3.4E-05 48.0 3.7 24 73-96 72-95 (347)
487 1ltq_A Polynucleotide kinase; 80.2 0.91 3.1E-05 46.8 3.3 23 73-95 3-25 (301)
488 2ga8_A Hypothetical 39.9 kDa p 80.1 1.2 4.1E-05 47.3 4.1 26 70-95 22-47 (359)
489 3euj_A Chromosome partition pr 79.9 0.85 2.9E-05 50.7 3.0 22 73-94 30-51 (483)
490 1n0w_A DNA repair protein RAD5 79.9 0.95 3.2E-05 44.8 3.2 22 73-94 25-46 (243)
491 3pvs_A Replication-associated 79.8 5.9 0.0002 43.5 9.9 27 70-96 48-74 (447)
492 3cmu_A Protein RECA, recombina 79.7 4.5 0.00015 52.4 9.8 27 70-96 1425-1451(2050)
493 3crm_A TRNA delta(2)-isopenten 78.8 1.3 4.5E-05 46.4 3.9 25 73-97 6-30 (323)
494 1tue_A Replication protein E1; 78.5 0.98 3.3E-05 44.1 2.6 23 73-95 59-81 (212)
495 1p5z_B DCK, deoxycytidine kina 78.4 0.76 2.6E-05 46.6 1.9 24 71-94 23-46 (263)
496 1a7j_A Phosphoribulokinase; tr 78.3 0.71 2.4E-05 47.8 1.7 23 72-94 5-27 (290)
497 2chg_A Replication factor C sm 77.9 1.3 4.4E-05 42.6 3.4 24 71-94 37-60 (226)
498 2qz4_A Paraplegin; AAA+, SPG7, 77.8 1.3 4.6E-05 44.3 3.6 26 71-96 38-63 (262)
499 2dpy_A FLII, flagellum-specifi 77.8 1.3 4.4E-05 48.7 3.7 24 73-96 158-181 (438)
500 3d3q_A TRNA delta(2)-isopenten 77.7 1.5 5E-05 46.4 3.9 25 73-97 8-32 (340)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.8e-139 Score=1235.25 Aligned_cols=684 Identities=43% Similarity=0.741 Sum_probs=624.9
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-------Ce
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------DY 140 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------~~ 140 (761)
+.++||||||+||+|||||||+++||+.+|.+.+.|+++++ .+++|++++|++|||||+++..++.|+ ++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~---~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~ 85 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG---AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNY 85 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCCE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC---CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCE
Confidence 34789999999999999999999999999999999999988 889999999999999999999999996 58
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHh
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKL 220 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l 220 (761)
.+||||||||+||..++.++|+.+|+||+||||.+|++.||+.+|++|.++++|+++||||||+.++++...++++++.+
T Consensus 86 ~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l 165 (709)
T 4fn5_A 86 RVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRL 165 (709)
T ss_dssp EEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCCcCccccceecccceeEEeeCC-CCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCC
Q 004316 221 RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGS-NGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEP 299 (761)
Q Consensus 221 ~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~ 299 (761)
+..+.++++|++.++.|.|++|++++++++|... .|..+...++|.++.+....++..++|.+++.|++++++|+++.+
T Consensus 166 ~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~ 245 (709)
T 4fn5_A 166 GHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGE 245 (709)
T ss_dssp CSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSC
T ss_pred ccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 9999999999999999999999999999999764 477888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccc-cccCccceeeccCCCCCCcEEEEE
Q 004316 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAF 378 (761)
Q Consensus 300 ~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~ 378 (761)
++.+++...+++....+.++|++|+||+++.|++.|||+|++++|+|.+.+..+. +.+++.......|++++||+++||
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~Vf 325 (709)
T 4fn5_A 246 LSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAF 325 (709)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEE
T ss_pred ccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEE
Confidence 9999999999999999999999999999999999999999999999998776542 233334445677999999999999
Q ss_pred eeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCC
Q 004316 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSV 456 (761)
Q Consensus 379 k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~ 456 (761)
|+.+|++ |+++|+|||||+|++||+|+|...++.+++.+++.++|+++++++++.|||||+|.|+ ++.+||||++...
T Consensus 326 K~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~ 405 (709)
T 4fn5_A 326 KIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEK 405 (709)
T ss_dssp ECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSS
T ss_pred EeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCc
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred ccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEE
Q 004316 457 KYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDAT 536 (761)
Q Consensus 457 ~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~ 536 (761)
+..++++.+|+|+++++|+|.++.|++||.++|++|+++||+++++.+++|||++|+||||||||||++||+++||+++.
T Consensus 406 ~~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~ 485 (709)
T 4fn5_A 406 PIILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEAN 485 (709)
T ss_dssp CCBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBC
T ss_pred cccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCceeeEEEeeecc-ceeeeeeecccCCCcceEEEEEEEEeCCCC----CCCCceeeecccCCCCCcchHHHHHHHHHH
Q 004316 537 VGKPRVNFREAVTKR-AEFDYLHKKQSGGQGQYGRVIGYIEPLPLG----SPAKFEFENLLVGQAIPSNFIPAIEKGFKE 611 (761)
Q Consensus 537 ~~~p~V~yrEti~~~-~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 611 (761)
+++|.|+|||||++. ++.++++++|++|++||+.++++++|.+.. .+.++.|.+++.++.+|++|+++|++||+|
T Consensus 486 vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~ 565 (709)
T 4fn5_A 486 IGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEE 565 (709)
T ss_dssp CBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHH
T ss_pred EeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHHHHHHH
Confidence 999999999999874 568899999999999999999999998532 235789999999999999999999999999
Q ss_pred HHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCC
Q 004316 612 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 691 (761)
Q Consensus 612 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rr 691 (761)
|+++||||||||+||+|+|.|+++|+++|++++|+.|+++||++|+++|+|+||||||.|+|+||++|+|+||++|++||
T Consensus 566 a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RR 645 (709)
T 4fn5_A 566 QMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRR 645 (709)
T ss_dssp HHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGT
T ss_pred HHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHh
Q 004316 692 GMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 754 (761)
Q Consensus 692 g~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~ 754 (761)
|+|++++..++...|+|++|++|||||+++||++|+|+|+|+|+|+||++||+++++++|++.
T Consensus 646 G~i~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~ 708 (709)
T 4fn5_A 646 GLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 708 (709)
T ss_dssp CEEEEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHTC
T ss_pred CEEeceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHhc
Confidence 999999998888999999999999999999999999999999999999999999999999763
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=5.4e-136 Score=1204.69 Aligned_cols=682 Identities=46% Similarity=0.769 Sum_probs=649.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-------eE
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-------YQ 141 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------~~ 141 (761)
.+++|||+|+||+|||||||+++|++.+|.+.+.+.++++ .+++|+++.|+++|+|+......+.|++ +.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 83 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHR 83 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC---ceeecChhhHHhcCceeeeceEEEEECCccccCCcee
Confidence 4689999999999999999999999999998887878777 7899999999999999999999999988 99
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhC
Q 004316 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLR 221 (761)
Q Consensus 142 i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~ 221 (761)
++|||||||.+|..++.++++.+|++|+|+|+++|++.||..+|+++...++|+++|+||+|+..+++.++++++++.++
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLG 163 (704)
T ss_pred EEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCCCcCccccceecccceeEEeeC-CCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCC
Q 004316 222 HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI 300 (761)
Q Consensus 222 ~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 300 (761)
..+.++++|++.++.|.|++|++.+++++|++ ..|..+...++|+++.+++.++|++|+|.+++.||++|++||++.++
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 99999999999999999999999999999976 44777888899999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccc-cccCccceeeccCCCCCCcEEEEEe
Q 004316 301 SSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 301 ~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
+.+++...+++.+..++++||+|+||++|.|++.|||+|++++|+|.+++..+. +.........+.|++++||+++|||
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK 323 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFK 323 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999999987654422 1111111245568899999999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCc
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVK 457 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~ 457 (761)
++.|++ |+++|+|||||+|++||+|++.+.+++++|++|+.++|++++++++|.|||||+|.|+ ++++||||++...+
T Consensus 324 ~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~ 403 (704)
T 2rdo_7 324 IATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAP 403 (704)
T ss_pred EEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcc
Confidence 999998 9999999999999999999999999999999999999999999999999999999999 89999999998888
Q ss_pred cccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEE
Q 004316 458 YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATV 537 (761)
Q Consensus 458 ~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~ 537 (761)
..++++.+|+|+++++|+|.++.|++||.++|++|.+|||++++..|+||||++|+|||||||||+++||+++||+++.+
T Consensus 404 ~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~ 483 (704)
T 2rdo_7 404 IILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANV 483 (704)
T ss_pred cccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeEEEeeeccc-eeeeeeecccCCCcceEEEEEEEEeC---CCCCCCCceeeecccCCCCCcchHHHHHHHHHHHH
Q 004316 538 GKPRVNFREAVTKRA-EFDYLHKKQSGGQGQYGRVIGYIEPL---PLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAA 613 (761)
Q Consensus 538 ~~p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~i~P~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~ 613 (761)
++|+|+|||||.+++ +..++|++|+||++||++|+++++|+ +++ .++.|.+.+.|+.+|++|+++|++||+||+
T Consensus 484 ~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g--~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~ 561 (704)
T 2rdo_7 484 GKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNP--KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 561 (704)
T ss_pred eCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCC--CCcEEEEeccCCcCcHHHHHHHHHHHHHHH
Confidence 999999999999988 89999999999999999999999999 765 489999999999999999999999999999
Q ss_pred hcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCce
Q 004316 614 NSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGM 693 (761)
Q Consensus 614 ~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~ 693 (761)
++||||||||+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|.||++|+|+||++|++|||+
T Consensus 562 ~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~ 641 (704)
T 2rdo_7 562 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGM 641 (704)
T ss_pred hcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004316 694 IVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 755 (761)
Q Consensus 694 i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~ 755 (761)
|++++..++.+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++++
T Consensus 642 i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 703 (704)
T 2rdo_7 642 LKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARG 703 (704)
T ss_pred EeCceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHHhc
Confidence 99999988899999999999999999999999999999999999999999999999998754
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.8e-134 Score=1188.34 Aligned_cols=683 Identities=45% Similarity=0.761 Sum_probs=624.7
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
+.+++|||+|+||+|+|||||+++|++.++.+.+.+.++++ .+++|+.+.|+++|+|+......+.|+++.++||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~---~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 82 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG---ASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDT 82 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC----------------------------CCSEEEEEETTEEEEEECC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---ceecccchhhhhcCceEeeeeEEEEECCeeEEEEEC
Confidence 34679999999999999999999999999988877777777 778999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..+++.+.++++++.++..+.+.
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~ 162 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPI 162 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEES
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
++|+..+..|.|++|++.++.++|++..|..+...++|.++.++++.+|++|++.+++.||++|++||++.+++.+++..
T Consensus 163 ~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 163 QLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred EeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999972236667778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccc-cccCccceeeccCCCCCCcEEEEEeeeeccC-
Q 004316 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (761)
.+++.+..+.++||+|+||++|.|++.|||+|++++|+|.+++.++. +..+........|++++||+++|||++.|++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999988655422 1111023345678899999999999999998
Q ss_pred ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccccCC
Q 004316 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTSMH 464 (761)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~~~ 464 (761)
|+++|+|||||+|++||+|+|...+++++|++|+.++|+++++++++.|||||++.|+ ++.+||||++...+..++++.
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred ceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999988888899999
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeE
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (761)
+|+|+++++|+|+++.|++||.++|++|.+|||+|++..|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004316 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (761)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~ 624 (761)
||||.++++..++|++|+||++||++|+++++|++++ .++.|.+++.|+.+|++|+++|++||+||+++||||||||+
T Consensus 483 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g--~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~ 560 (693)
T 2xex_A 483 RETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETG--AGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLI 560 (693)
T ss_dssp EEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTT--CCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBC
T ss_pred EEEeccccceeEeeccccCCCCceEEEEEEEEECCCC--CCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCcee
Confidence 9999999999999999999999999999999999976 48999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeE
Q 004316 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 704 (761)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 704 (761)
||+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+||++|++|||+|++++..++.+
T Consensus 561 ~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~ 640 (693)
T 2xex_A 561 DVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQ 640 (693)
T ss_dssp SEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred eEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhh
Q 004316 705 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 755 (761)
Q Consensus 705 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~ 755 (761)
.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++++
T Consensus 641 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 691 (693)
T 2xex_A 641 VVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691 (693)
T ss_dssp EEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred EEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998864
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.9e-134 Score=1188.95 Aligned_cols=679 Identities=48% Similarity=0.819 Sum_probs=578.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.+++|||+|+||+|||||||+++|++.++.+.+.+.++++ .+++|+++.|+++|+|+......+.|+++.++|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~---~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------CCEEEEEETTEEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCC---ceeccCchhhhhcccccccceEEEEECCeEEEEEECc
Confidence 4679999999999999999999999999998887777777 7889999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..+++.+.++++++.++..+.+.+
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQ 165 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECE
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004316 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (761)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (761)
+|++.+..|.|++|++.+++++|++..|..+...++|+++.++++++|++|++.+++.||++|++||++.+++.+++...
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999999999733466788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-cc
Q 004316 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (761)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~ 387 (761)
+++.+..+.++||+|+||++|.|++.|||+|++++|+|.+++..+.... ......+.|++++||+++|||++.|++ |+
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~ 324 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP-EGEVVEIHPDPNGPLAALAFKIMADPYVGR 324 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS-SSCEEEECCCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC-CccccccccCCCCCcEEEEEEEEEcCCCCc
Confidence 9999999999999999999999999999999999999998765432111 122346678899999999999999998 99
Q ss_pred EEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCc-cccccCCC
Q 004316 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVK-YTMTSMHV 465 (761)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~-~~l~~~~~ 465 (761)
++|+|||||+|++||+|+|.++++.++|++|+.++|++++++++|.|||||+|.|+ ++.+||||++...+ ..++++.+
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~~ 404 (691)
T 1dar_A 325 LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEV 404 (691)
T ss_dssp EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC----
T ss_pred EEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 89999999998877 78899999
Q ss_pred CCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeEE
Q 004316 466 PEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFR 545 (761)
Q Consensus 466 p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yr 545 (761)
|+|+++++|+|+++.|++||.++|++|.+|||++++..|+||||++|+|||||||||+++||+++||+++.+++|+|+||
T Consensus 405 ~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yr 484 (691)
T 1dar_A 405 PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484 (691)
T ss_dssp ----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCCE
T ss_pred CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeee
Q 004316 546 EAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEY 625 (761)
Q Consensus 546 Eti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~ 625 (761)
|||.++++..++|++|+||++||++|+++++|++++ .++.|.+++.|+.+|++|+++|++||+||+++||||||||+|
T Consensus 485 Eti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g--~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~ 562 (691)
T 1dar_A 485 ETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRG--SGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562 (691)
T ss_dssp EECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTT--CCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCS
T ss_pred EeeccceeeeeeeccccCCCCceEEEEEEEEECCCC--CCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceee
Confidence 999999999999999999999999999999999976 489999999999999999999999999999999999999999
Q ss_pred EEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEE
Q 004316 626 LRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSV 705 (761)
Q Consensus 626 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~ 705 (761)
|+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+||++|++|||+|++++..++.+.
T Consensus 563 v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~ 642 (691)
T 1dar_A 563 IKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV 642 (691)
T ss_dssp EEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEEE
T ss_pred EEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHH
Q 004316 706 ITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKT 753 (761)
Q Consensus 706 i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~ 753 (761)
|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++
T Consensus 643 i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 643 IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC-
T ss_pred EEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHHHHHHhc
Confidence 999999999999999999999999999999999999999999999853
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.3e-125 Score=1112.09 Aligned_cols=655 Identities=32% Similarity=0.540 Sum_probs=628.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.++.+||+|+||+|||||||+++|+...+.+...|.+.++ ..++|+.+.|+++|+|+......+.|+++.++|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC---cccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 4578999999999999999999999988887777777556 6788999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
||.+|..++.++++.+|++++|+|+++|+..|+..+|+++...++|+++|+||+|+. .+..+.++++.+.++ .+.+.+
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~ 160 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPID 160 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECE
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEE
Confidence 999999999999999999999999999999999999999999999999999999999 889999999999999 888999
Q ss_pred ecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004316 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (761)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (761)
+|++.+..|.|++|++.++.|+|++ |. +...++|+++.++++++|++|++.+++.||+++++|+++.+++.+++...
T Consensus 161 ~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~ 237 (665)
T 2dy1_A 161 LPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKA 237 (665)
T ss_dssp EEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred eeecCCCcccchhhhhhhheeecCC--Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999986 44 77789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-cc
Q 004316 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (761)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~ 387 (761)
+++.+..++++|++++||++|.||+.||++|++++|+|.+. .+++||+++|||++.|++ |+
T Consensus 238 ~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------~~~~p~~~~V~k~~~d~~~G~ 299 (665)
T 2dy1_A 238 FHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER------------------FGDGPPLAKVFKVQVDPFMGQ 299 (665)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH------------------HCSCSCEEEEEEEEEETTTEE
T ss_pred HHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc------------------CCCCCeEEEEEEEEEcCCCCe
Confidence 99999999999999999999999999999999999999732 157899999999999998 99
Q ss_pred EEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCc--cccccCC
Q 004316 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVK--YTMTSMH 464 (761)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~--~~l~~~~ 464 (761)
++++|||||+|++||.|++.+ +.++|++|+.++|++.+++++|.|||||++.|+ ++.+||||++...+ ..++++.
T Consensus 300 ~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~ 377 (665)
T 2dy1_A 300 VAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFAR 377 (665)
T ss_dssp EEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCC
T ss_pred EEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCC
Confidence 999999999999999999887 678999999999999999999999999999999 89999999998776 7888999
Q ss_pred CCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeE
Q 004316 465 VPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 544 (761)
Q Consensus 465 ~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~y 544 (761)
+|+|+++++|+|.++.|++||.++|++|.+|||++++..|++|||++|+|||||||||+++||+ +||+++.+++|+|+|
T Consensus 378 ~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~y 456 (665)
T 2dy1_A 378 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPY 456 (665)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCC
T ss_pred CCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCee
Q 004316 545 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 624 (761)
Q Consensus 545 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~ 624 (761)
||||.++++..++|++|+||++||++|+++++|++ ++.|.+++.++.+|++|+++|++||+||+++||||||||+
T Consensus 457 rEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~ 531 (665)
T 2dy1_A 457 RETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVM 531 (665)
T ss_dssp EEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBC
T ss_pred EEeeccceeeeeecccccCCCcceEEEEEEEEECC-----CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCcee
Confidence 99999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeE
Q 004316 625 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 704 (761)
Q Consensus 625 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 704 (761)
||+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+||++|++|||+|++++..++.+
T Consensus 532 ~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~ 611 (665)
T 2dy1_A 532 GFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALS 611 (665)
T ss_dssp SEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred eEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecCChhHHHHHHHHhhhc
Q 004316 705 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAG 757 (761)
Q Consensus 705 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~i~~~~~~~ 757 (761)
.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++++++|+++++++
T Consensus 612 ~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~~~ 664 (665)
T 2dy1_A 612 VVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQE 664 (665)
T ss_dssp EEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999987543
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=5.9e-129 Score=1135.33 Aligned_cols=615 Identities=27% Similarity=0.421 Sum_probs=576.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+||||+|+||+|||||||+++||+.+|.+++.|+++++ .+++|+++.|++|||||+++..++.|+++.|||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g---~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 77 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG---TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH 77 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS---CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC---CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc
Confidence 59999999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeec
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 230 (761)
.||..++.++++.+|+||+||||.+|++.||+.+|++|.++++|+|+||||||+.++++.+.++++++.|+..+...+.
T Consensus 78 ~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~- 156 (638)
T 3j25_A 78 MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK- 156 (638)
T ss_dssp SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877653321
Q ss_pred CCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004316 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (761)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (761)
+++...... . ... ..++.+.+++.||+++++|+++..++..++...++
T Consensus 157 ----------~~~~~~~~~-------~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~ 204 (638)
T 3j25_A 157 ----------VELYPNVCV-------T-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEES 204 (638)
T ss_dssp ----------CCSCGGGCC-------C-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHH
T ss_pred ----------eEeeccccc-------c-----ccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHh
Confidence 111111000 0 000 13456888899999999999999999999999999
Q ss_pred HHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEE
Q 004316 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (761)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~ 389 (761)
..+..+.++||+|+||++|.||+.|||+|++++|+|.+ +.++||+++|||+.+|++ |+++
T Consensus 205 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~-------------------~~~~~~~~~Vfk~~~d~~~G~la 265 (638)
T 3j25_A 205 IRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTH-------------------RGPSELCGNVFKIEYTKKRQRLA 265 (638)
T ss_dssp HHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGG-------------------GSCCCCCBEEBCCCCCSTTCCCC
T ss_pred hhhcccccccccccccccCCCchhHhhhhhccccCccc-------------------chhhhhcceeeeeeeeccCceEE
Confidence 99999999999999999999999999999999999973 356799999999999998 9999
Q ss_pred EEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEeccccccCceeecCCCccccccCCCCCce
Q 004316 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMHVPEPV 469 (761)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~GdtL~~~~~~~~l~~~~~p~Pv 469 (761)
|+|||||+|++||.|++.+.+ ++++.+++.++|.++++++++.|||||++.|.++++|+|+++......+..+.+|+|+
T Consensus 266 ~~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 266 YIRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp BCCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSSSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEeccccccCceecCCCCcccccCccCCCcc
Confidence 999999999999999887655 5789999999999999999999999999998888899999998888888889999999
Q ss_pred EEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeEEEeee
Q 004316 470 MSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVT 549 (761)
Q Consensus 470 ~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~ 549 (761)
++++|+|.++.|++||.++|++|.+|||+++++.|++|||++|+|||||||||+++||+++||+++.+++|+|+|||||.
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEE
Q 004316 550 KRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVV 629 (761)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~ 629 (761)
++++ +++++|+++++||++|++.++|++++ .++.|.+.+.++.+|++|+++|++||+|++++| |+||||+||+|+
T Consensus 425 ~~~~--~~~~~~~~~~~~~~~v~~~~eP~~~~--~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~ 499 (638)
T 3j25_A 425 KNAE--YTIHIEVPPNPFWASIGLSVSPLPLG--SGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKIC 499 (638)
T ss_dssp SCCE--ECCCCCSSSCCCCCCCCEECCCCCSS--CCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCC
T ss_pred ccce--EEEEEecCCCCceEEEEEEEecccCC--CCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEE
Confidence 8765 67889999999999999999999976 489999999999999999999999999999999 999999999999
Q ss_pred EEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEE
Q 004316 630 LTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAH 709 (761)
Q Consensus 630 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~ 709 (761)
|.||.+|+++|++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|++++..++.+.|+|+
T Consensus 500 l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~ 579 (638)
T 3j25_A 500 FKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGE 579 (638)
T ss_dssp CCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECC
T ss_pred EEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhhchHHHHhhhcCCeEEEEEEeCceecCChhH
Q 004316 710 VPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDV 746 (761)
Q Consensus 710 vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 746 (761)
+|++|||||+++|||+|+|+|+|+|+|+||+++|+|+
T Consensus 580 vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp 616 (638)
T 3j25_A 580 IPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEP 616 (638)
T ss_dssp CSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCC
T ss_pred ECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCc
Confidence 9999999999999999999999999999999999875
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.4e-118 Score=1075.31 Aligned_cols=669 Identities=25% Similarity=0.369 Sum_probs=568.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec----------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---------- 138 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------- 138 (761)
.+++|||+|+||+|||||||+++|++.+|.+...+ .++ .+++|+++.|+++|+|+.+....+.|+
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~---~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~ 90 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGE---ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK 90 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCC---ceeecCchhhhhcceeEeeceeEEEeccccccccccc
Confidence 46799999999999999999999999998876543 233 578999999999999999999888886
Q ss_pred ------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-----
Q 004316 139 ------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA----- 207 (761)
Q Consensus 139 ------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~----- 207 (761)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|+..+|+++...++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~ 170 (842)
T 1n0u_A 91 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVS 170 (842)
T ss_dssp SCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCC
T ss_pred ccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred ------ChHHHHHHHHHHhC-----------CceeeeeecCCCc----------------CccccceecccceeE---Ee
Q 004316 208 ------DPWKVLDQARSKLR-----------HHCAAVQVPMGLE----------------DQFQGLVDLVQLTAY---YF 251 (761)
Q Consensus 208 ------~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~g~idl~~~~~~---~~ 251 (761)
++.+.+++++..++ ..+.+.++|++++ .+|.+.++.+..+.| ||
T Consensus 171 ~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~ 250 (842)
T 1n0u_A 171 KEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFF 250 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccc
Confidence 23456677766653 3444557777655 445444555555555 78
Q ss_pred eCCCCCeEEecCCC-------hhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcC--CCCChhHHH---HHHHHHHhcCcce
Q 004316 252 HGSNGEKIVTGEVP-------ADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLE---EAIRRATVARKFI 319 (761)
Q Consensus 252 ~~~~g~~~~~~~i~-------~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~---~~l~~~~~~~~~~ 319 (761)
++. ++.+...++| +.|.+++++++.+|++.+++.||++|++||++ .+++.+++. +.+++.+ ++.|+
T Consensus 251 ~~~-~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~ 328 (842)
T 1n0u_A 251 NPK-TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFL 328 (842)
T ss_dssp ETT-TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHS
T ss_pred cCC-CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhcc
Confidence 653 5566655544 46889999999999999999999999999986 678888888 8888888 77999
Q ss_pred eEeecccCCCcchHHHHHHHHhhCCCCccccccccc------ccCccceeeccCCCCCCcEEEEEeeeeccC-cc-EEEE
Q 004316 320 PVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYL 391 (761)
Q Consensus 320 Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~ 391 (761)
|+ ++.|||+|++++|+|.+++.++.. .+.+.......|++++||+|+|||+..+++ |+ ++|+
T Consensus 329 pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~ 398 (842)
T 1n0u_A 329 PA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFG 398 (842)
T ss_dssp BH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEE
T ss_pred ch----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEE
Confidence 98 589999999999999987544321 111112234568999999999999999998 96 9999
Q ss_pred EEEcceecCCCEEEe------cCCCe---EEecCcEEEEecCceeecceecCCCEEEEecc-ccccC-ceeecCCCcccc
Q 004316 392 RIYEGVIRKGDFIIN------VNTGK---KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASG-DTFTDGSVKYTM 460 (761)
Q Consensus 392 RV~sG~l~~g~~v~~------~~~~~---~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G-dtL~~~~~~~~l 460 (761)
|||||+|++||.|++ .+.++ .++|++|+.++|+++++|++|.|||||+|.|+ ++.+| +|||+...+..+
T Consensus 399 RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l 478 (842)
T 1n0u_A 399 RVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNM 478 (842)
T ss_dssp EEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCB
T ss_pred EEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCcccc
Confidence 999999999999954 34444 68999999999999999999999999999999 66543 599998877888
Q ss_pred ccCCCC-CceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhc-ceeEEEc
Q 004316 461 TSMHVP-EPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVG 538 (761)
Q Consensus 461 ~~~~~p-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~v~v~~~ 538 (761)
+++.+| +|+++++|+|+++.|++||.++|++|.+|||+|++..| ||||++|+|||||||||+++||+++| |+++.++
T Consensus 479 ~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~ 557 (842)
T 1n0u_A 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKIS 557 (842)
T ss_dssp CCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEE
T ss_pred ccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEec
Confidence 899888 69999999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred CceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCC-------------------------------------
Q 004316 539 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 581 (761)
Q Consensus 539 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~------------------------------------- 581 (761)
+|+|+|||||.++++..+..+. ++.|.+++++++|++++
T Consensus 558 ~P~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~i 633 (842)
T 1n0u_A 558 PPVVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKI 633 (842)
T ss_dssp CCCCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTE
T ss_pred CcEEEEEEeeccccccceeecc----CCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhce
Confidence 9999999999988876444332 34456899999998741
Q ss_pred ------CCCCceeeecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCc--HHHHHHHHHHHH
Q 004316 582 ------SPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSS--ELAFKMAAIYAF 653 (761)
Q Consensus 582 ------~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~ 653 (761)
.+++|.|.|.+.|+.++++|+++|++||+||+++||||||||+||+|+|+|+++|...+. .++|+.|+++||
T Consensus 634 w~~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~ 713 (842)
T 1n0u_A 634 WCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRAT 713 (842)
T ss_dssp EEESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHH
T ss_pred eeeccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHH
Confidence 124799999999999999999999999999999999999999999999999999964433 678999999999
Q ss_pred HHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccccC--CeEEEEEEechhhhhchHHHHhhhcCCeEE
Q 004316 654 RQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGE 731 (761)
Q Consensus 654 ~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~ 731 (761)
++|+++|+|+||||||+|+|+||++++|+||+||++|||+|+++++.+ +.+.|+|++|++|||||+++|||+|+|+|+
T Consensus 714 ~~a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~ 793 (842)
T 1n0u_A 714 YAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAF 793 (842)
T ss_dssp HHHHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCE
T ss_pred HHHHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCce
Confidence 999999999999999999999999999999999999999999998864 579999999999999999999999999999
Q ss_pred EEEEeCceecCChh------HHHHHHHHhhhccC
Q 004316 732 FTMEYKEHAPVSQD------VQLQLVKTHNAGRG 759 (761)
Q Consensus 732 ~~~~f~~y~~v~~~------~~~~i~~~~~~~~~ 759 (761)
|+|+|+||++||++ .+++++.+.|+.++
T Consensus 794 ~~~~F~~y~~vp~~~~~~~~~a~~~~~~~R~rKG 827 (842)
T 1n0u_A 794 PQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHG 827 (842)
T ss_dssp EEEEEEEEEECCSCTTCTTSHHHHHHHHHHHHTT
T ss_pred EEEEeccceeCCCCccchhhHHHHHHHHHHHhCC
Confidence 99999999999987 89999999988764
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=5.2e-93 Score=815.37 Aligned_cols=487 Identities=25% Similarity=0.413 Sum_probs=399.9
Q ss_pred hhhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc-ccccccChhhhhhhcceeeeceEEEeecCeEEE
Q 004316 65 WKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (761)
Q Consensus 65 ~~~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (761)
.+....++|||+|+||+|||||||+++||+.+|.+.+.|.|+++.. ..+++|+++.|++|||||+++...+.|+++.||
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iN 103 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVN 103 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEE
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEE
Confidence 3455678999999999999999999999999999999999987742 358999999999999999999999999999999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
|||||||.||..++.++|+.+|+||+||||.+|++.||+.+|++|.++++|+|+||||||+.++++.++++++++.|+..
T Consensus 104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~ 183 (548)
T 3vqt_A 104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIE 183 (548)
T ss_dssp EECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSE
T ss_pred EEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhH-HHHHHHHHHHHHHHhcCCHHHHHHHhc-CCCCC
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADME-TFVAEKRRELIELVSEVDDKLGDMFLS-DEPIS 301 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~-~~~~~~~~~l~e~~~~~dd~l~e~~l~-~~~~~ 301 (761)
+.++++||+.+..|.|++|++.+++++|++..+............. +...+......+.. +..++.+.+ ..+.+
T Consensus 184 ~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 259 (548)
T 3vqt_A 184 CAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL----RMDLALLEEAGTPFD 259 (548)
T ss_dssp EEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHH----HHHHHHHHHHCCCCC
T ss_pred eEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHh----hhHHHHHhhccCchh
Confidence 9999999999999999999999999999876655433222211111 11111111111110 011111111 12222
Q ss_pred hhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeee
Q 004316 302 SGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (761)
Q Consensus 302 ~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (761)
. +++..+.++||+||||++|.||+.|||+|++++|+|.+...... ...+.++||+++|||+.
T Consensus 260 ~--------e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~----------~~~~~~~p~~a~vfKi~ 321 (548)
T 3vqt_A 260 E--------ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR----------VVEPGEEAFTGVVFKIQ 321 (548)
T ss_dssp H--------HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSS----------EECTTCSSCEEEEEEEE
T ss_pred H--------HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccccc----------ccCCCCcCceEEEEEEE
Confidence 2 24557899999999999999999999999999999986543211 11245689999999998
Q ss_pred ec---cC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCC
Q 004316 382 EG---RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSV 456 (761)
Q Consensus 382 ~~---~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~ 456 (761)
.+ ++ |+++|+|||||+|++||.|+|.+.++++++.+++.++|++++++++|.|||||+|.|+ ++.+|||||+.+.
T Consensus 322 ~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 322 ANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKE 401 (548)
T ss_dssp CC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSS
T ss_pred ccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCC
Confidence 87 66 9999999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred ccccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEE
Q 004316 457 KYTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDAT 536 (761)
Q Consensus 457 ~~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~ 536 (761)
+..++++.+++|+++++|+|+++.|++||.++|++|.++||+ ++..+++|||++|+|||||||||+++||+++||+++.
T Consensus 402 ~~~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~-~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~ 480 (548)
T 3vqt_A 402 VLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAV-QLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAV 480 (548)
T ss_dssp CCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSS-EEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEE
T ss_pred ccccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCce-eEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEE
Confidence 888889999999999999999999999999999999999985 5667899999999999999999999999999999976
Q ss_pred -----EcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEE
Q 004316 537 -----VGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGY 574 (761)
Q Consensus 537 -----~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 574 (761)
++.|+|+|||||.+.++++++||+|+|+++||+.|.+.
T Consensus 481 ~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 481 YEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp EEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred EeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 57899999999999999999999999999999998764
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=4.1e-82 Score=726.31 Aligned_cols=461 Identities=27% Similarity=0.476 Sum_probs=390.6
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-----eEEE
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-----YQIN 143 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i~ 143 (761)
.+++|||+|+||+|||||||+++|++.+|.+...+ + + .+++|+++.|+++|+|+.+....+.|+. +.++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~in 76 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-K--R---EQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLH 76 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------------CCCCSEEEEEECTTSCEEEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-c--c---ccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEE
Confidence 35799999999999999999999999988876532 1 2 5689999999999999999998888863 8999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 144 liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
|||||||.+|..++.++++.+|++|+|+|+++|++.||..+|.++...++|+|+|+||+|+.++++++..+++.+.++..
T Consensus 77 liDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 77 LIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD 156 (600)
T ss_dssp EECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC
T ss_pred EEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888777777776665421
Q ss_pred eeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChh
Q 004316 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (761)
Q Consensus 224 ~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (761)
+
T Consensus 157 ~------------------------------------------------------------------------------- 157 (600)
T 2ywe_A 157 P------------------------------------------------------------------------------- 157 (600)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeec
Q 004316 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (761)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 383 (761)
.+++++||++|.||++|+++|++++|+|. .++++|+.++||+++.|
T Consensus 158 ---------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~-------------------~~~~~pl~~lV~~~~~d 203 (600)
T 2ywe_A 158 ---------------EEAILASAKEGIGIEEILEAIVNRIPPPK-------------------GDPQKPLKALIFDSYYD 203 (600)
T ss_dssp ---------------GGCEECBTTTTBSHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEEEE
T ss_pred ---------------ccEEEEEeecCCCchHHHHHHHHhccccc-------------------ccccCCcceeEEEEeec
Confidence 13788899999999999999999999986 35788999999999999
Q ss_pred cC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe-cc----ccccCceeecCCCc
Q 004316 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-GV----DCASGDTFTDGSVK 457 (761)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~GdtL~~~~~~ 457 (761)
++ |+++++||++|++++||.|++.++++.++|.+++.+.+ +..+++++.||||+++. |+ ++++||||+...++
T Consensus 204 ~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 204 PYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp TTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSC
T ss_pred ccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCc
Confidence 98 99999999999999999999999999999999998887 47899999999999874 54 78999999988776
Q ss_pred --cccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhh
Q 004316 458 --YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRRE 530 (761)
Q Consensus 458 --~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~ 530 (761)
.+++++.+|+|+++++++|.+..|+++|.++|++|.+|||+|+++ +||+|.+++| ||||||||+++||+++
T Consensus 283 ~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re 360 (600)
T 2ywe_A 283 TKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLERE 360 (600)
T ss_dssp CSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhh
Confidence 468888999999999999999999999999999999999999987 5789877777 9999999999999999
Q ss_pred cceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHH
Q 004316 531 YKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFK 610 (761)
Q Consensus 531 f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 610 (761)
||+++.+++|+|+||||+.+. | ++ +.+ .|
T Consensus 361 ~~~~v~~~~P~V~yreti~~~------------g--~~----~~~-------------~~-------------------- 389 (600)
T 2ywe_A 361 YGVKIITTAPNVIYRVKKKFT------------D--EV----IEV-------------RN-------------------- 389 (600)
T ss_dssp SCCCEEECCCEECEEEEETTC------------S--SC----EEE-------------SS--------------------
T ss_pred cCceEEEEeeeEEEEEEecCC------------C--cE----EEE-------------eC--------------------
Confidence 999999999999999998741 1 11 111 11
Q ss_pred HHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcC
Q 004316 611 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 690 (761)
Q Consensus 611 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~R 690 (761)
| .|+|+.| +. -+.||||||+++|.+|++|+|+||++|++|
T Consensus 390 ------p-~~~p~~~----------~~-----------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~r 429 (600)
T 2ywe_A 390 ------P-MDFPDNA----------GL-----------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQEK 429 (600)
T ss_dssp ------G-GGSCSCG----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHT
T ss_pred ------h-hhCCCCC----------cc-----------------------cccccCCeEEEEEEecHHHHHHHHHHHHHc
Confidence 1 4577765 11 138999999999999999999999999999
Q ss_pred Cceeeccccc-CCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 691 KGMIVGNDQE-GDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 691 rg~i~~~~~~-~~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
||++.+++.. +++..|+|.+|++|| +||.++|||+|+|+|+|+++|+||+++
T Consensus 430 rG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 430 RGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp TCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred CcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 9999999985 568999999999999 899999999999999999999999998
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.5e-80 Score=715.17 Aligned_cols=458 Identities=29% Similarity=0.480 Sum_probs=384.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-----CeEEEE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQINI 144 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~l 144 (761)
+++|||+|+||+|||||||+++|++.+|.+.... + + .+++|+++.|+++|+|+......+.|+ ++.++|
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~l 75 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-M--E---AQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNF 75 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-c--c---ccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEE
Confidence 4799999999999999999999999998876531 1 2 678999999999999999999999886 389999
Q ss_pred EeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCce
Q 004316 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 145 iDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 224 (761)
||||||.+|..++.++++.+|++|+|+|+++|++.||..+|..+...++|+|+|+||+|+.++++++..+++.+.++..+
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887777777766654221
Q ss_pred eeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhH
Q 004316 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (761)
Q Consensus 225 ~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (761)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeecc
Q 004316 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (761)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 384 (761)
.+++++||++|.||++|+++|.+++|+|. .++++|+.++||+++.|+
T Consensus 156 --------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-------------------~~~~~p~~alI~d~~~d~ 202 (599)
T 3cb4_D 156 --------------TDAVRCSAKTGVGVQDVLERLVRDIPPPE-------------------GDPEGPLQALIIDSWFDN 202 (599)
T ss_dssp --------------TTCEEECTTTCTTHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEEEET
T ss_pred --------------ceEEEeecccCCCchhHHHHHhhcCCCcc-------------------ccccCCceeeeeeccccc
Confidence 13678899999999999999999999986 357899999999999999
Q ss_pred C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe-c---c-ccccCceeecCCCc-
Q 004316 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-G---V-DCASGDTFTDGSVK- 457 (761)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~~GdtL~~~~~~- 457 (761)
+ |+++++||++|+|++||.+.+.++++.+++.+++.+.+. ..+++++.||||+++. | + ++++||||++..++
T Consensus 203 ~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~ 281 (599)
T 3cb4_D 203 YLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPA 281 (599)
T ss_dssp TTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCC
T ss_pred cccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCcc
Confidence 8 999999999999999999999999999999999988876 7899999999999874 5 4 78999999988776
Q ss_pred -cccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEe-----cchhHHHHHHHHHHhhc
Q 004316 458 -YTMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREY 531 (761)
Q Consensus 458 -~~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~f 531 (761)
..++.+..++|+++++++|.+..|.++|.++|++|.++||+|++. ++|+|.++.| ||||||||+++||+++|
T Consensus 282 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~ 359 (599)
T 3cb4_D 282 EKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREY 359 (599)
T ss_dssp SSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS
T ss_pred ccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHc
Confidence 568888999999999999999999999999999999999999987 5889988788 99999999999999999
Q ss_pred ceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCceeeecccCCCCCcchHHHHHHHHHH
Q 004316 532 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 611 (761)
Q Consensus 532 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 611 (761)
|+++.+++|+|+||||+.... ++.|.| |.
T Consensus 360 ~~~~~~~~P~V~yreti~~g~--------------------------------~~~~~~-------p~------------ 388 (599)
T 3cb4_D 360 DLDLITTAPTVVYEVETTSRE--------------------------------VIYVDS-------PS------------ 388 (599)
T ss_dssp CCCEEECCCEECEEEEESSSC--------------------------------EEEESS-------GG------------
T ss_pred CceEEEEeeeEEEEEEecCCc--------------------------------eEEecC-------hh------------
Confidence 999999999999999986421 222222 11
Q ss_pred HHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCC
Q 004316 612 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 691 (761)
Q Consensus 612 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rr 691 (761)
++|.. ++ -+.||||||+++|.+|++|+|+||++|++||
T Consensus 389 --------~~p~~-----------~~-----------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rr 426 (599)
T 3cb4_D 389 --------KLPAV-----------NN-----------------------IYELREPIAECHMLLPQAYLGNVITLCVEKR 426 (599)
T ss_dssp --------GSCCG-----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred --------hCCCc-----------cc-----------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcC
Confidence 12211 01 1379999999999999999999999999999
Q ss_pred ceeecccccCCeEEEEEEechhhh-hchHHHHhhhcCCeEEEEEEeCceecC
Q 004316 692 GMIVGNDQEGDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 742 (761)
Q Consensus 692 g~i~~~~~~~~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 742 (761)
|++++++..++...|+|.+|++|| +||.++|||+|+|+|+|+|+|+||+++
T Consensus 427 G~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 427 GVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp CEEEEEECCTTEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred cEEeCcEecCCeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 999999998889999999999999 899999999999999999999999998
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=5.4e-76 Score=670.86 Aligned_cols=461 Identities=27% Similarity=0.443 Sum_probs=396.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC-cccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
.+++|||+|+||+|||||||+++|++.+|.+...+.++.+. ....++|+.+.|+++|+|+......+.|+++.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45799999999999999999999999999998877776532 12568899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|+|+++|++.++..+|.++...++|+++|+||+|+.+++..+.++++.+.++..+.++
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPV 169 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
++|++.++.|.|++|++.++++.|++..+......+++.++.+. ..++.|.+. +++|+++.++..++...
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSCC
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhhH
Confidence 99999999999999999999999986555433333444433222 112222111 34444432222222112
Q ss_pred HHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeee--cc-
Q 004316 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE--GR- 384 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~~- 384 (761)
..++++..+.++||||+||++|.||++||++|++++|+|.+...... .. ...++||+++|||+.. ||
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~---------~~-~~~~~~~~~~VFKi~~~~dp~ 309 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR---------LV-KPEEEKFSGFVFKIQANMDPG 309 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS---------CB-CTTSSSCEEEEEEEEECCC-C
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce---------ee-CCCcccceeEEEEEecccCcc
Confidence 22677788999999999999999999999999999999986543210 11 1236899999999985 88
Q ss_pred C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCcccccc
Q 004316 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMTS 462 (761)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~~ 462 (761)
+ |+++|+|||||+|++||.|++.+.++.++|++++.++|.+++++++|.||||+++.|+ ++++|||||+. .+..+++
T Consensus 310 ~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~ 388 (528)
T 3tr5_A 310 HRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTG 388 (528)
T ss_dssp CCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCC
T ss_pred CCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCC
Confidence 7 9999999999999999999999999999999999999999999999999999999999 89999999984 4456777
Q ss_pred CCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCcee
Q 004316 463 MHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRV 542 (761)
Q Consensus 463 ~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V 542 (761)
+.++.|+++++|+|+++.|.+||.+||++|.+|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|.|
T Consensus 389 ~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v 467 (528)
T 3tr5_A 389 IPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNV 467 (528)
T ss_dssp CEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSC
T ss_pred CCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCce
Confidence 778889999999999999999999999999999996 7888999999999999999999999999999999999999999
Q ss_pred eEEEeeecc
Q 004316 543 NFREAVTKR 551 (761)
Q Consensus 543 ~yrEti~~~ 551 (761)
+|+++|...
T Consensus 468 ~~~~~i~~~ 476 (528)
T 3tr5_A 468 VTARWVICD 476 (528)
T ss_dssp CEEEEEECS
T ss_pred EEEEEecCC
Confidence 999999764
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=3.4e-75 Score=665.10 Aligned_cols=461 Identities=26% Similarity=0.458 Sum_probs=370.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc-ccccccChhhhhhhcceeeeceEEEeecCeEEEEEeC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (761)
.+++|||+|+||+|||||||+++|++..+.+...+.+.++.. ..+++|+++.|+++|+|+......+.|+++.++||||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 457899999999999999999999998888877666654322 2568899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
|||.+|..++.++++.+|++|+|+|+.+|++.|+..+|+.+...++|+++|+||+|+.+++..+.++++.+.++..+.++
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPI 169 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEe-cCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT-GEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~-~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (761)
++|++++..+.|++|++++.++.|....|..+.. .++| ++.+. .|.+. .++.++++|+++.++..+++.
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~-~~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVK-GLNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEEC-CSSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCC-CCCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 9999999999999999999999996533332111 2232 11111 12222 267778888776544444444
Q ss_pred HHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeee--c-
Q 004316 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE--G- 383 (761)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~- 383 (761)
..+++.+..+.++|||||||++|.||+.|||+|++++|+|.++.... ..+.+ .++||+++|||+.. |
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~---------~~~~~-~~~~~~~~vfKi~~~~d~ 309 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDT---------RTVEA-SEDKFTGFVFKIQANMDP 309 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSS---------CEECT-TCCSCEEEEEEECSSCCS
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccc---------cccCC-CCCCeEEEEEEEeeccCc
Confidence 44566788899999999999999999999999999999998543210 01112 26899999999976 4
Q ss_pred cC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-ccccCceeecCCCccccc
Q 004316 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-DCASGDTFTDGSVKYTMT 461 (761)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~GdtL~~~~~~~~l~ 461 (761)
++ |+++|+|||||+|++||.|++.+.|+.++|++++.++|.+++++++|.|||||++.|+ ++++||||++.. ...++
T Consensus 310 ~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~ 388 (529)
T 2h5e_A 310 KHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFT 388 (529)
T ss_dssp SSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBC
T ss_pred CCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccC
Confidence 45 9999999999999999999999999999999999999999999999999999999999 899999999876 46778
Q ss_pred cCCCCCceEEEEEEeCCCCCHhHHHHHHHHHHHhCCceEEEEcCCCCcEEEEecchhHHHHHHHHHHhhcceeEEEcCce
Q 004316 462 SMHVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPR 541 (761)
Q Consensus 462 ~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~v~v~~~~p~ 541 (761)
++.+++|+++++|+|.++.|.+||.++|++|++||| +++..+++|||++|+|||||||||+++||+++||+++.+++|.
T Consensus 389 ~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~ 467 (529)
T 2h5e_A 389 GIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVN 467 (529)
T ss_dssp CCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 888889999999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred eeEEEeeecc
Q 004316 542 VNFREAVTKR 551 (761)
Q Consensus 542 V~yrEti~~~ 551 (761)
|+|||||...
T Consensus 468 v~y~eti~~~ 477 (529)
T 2h5e_A 468 VATARWVECA 477 (529)
T ss_dssp CSEEEEEECS
T ss_pred eeEEEEEcCC
Confidence 9999999654
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=5.6e-42 Score=359.59 Aligned_cols=196 Identities=23% Similarity=0.412 Sum_probs=161.1
Q ss_pred EEecc-ccccCceeecCCCccccccCCCCCceEEEEEEeCCC----CC-----HhHHHHHHHHHHHhCCceEEEEcCCCC
Q 004316 439 AVFGV-DCASGDTFTDGSVKYTMTSMHVPEPVMSLAVQPVSK----DS-----GGQFSKALNRFQKEDPTFRVGLDAESG 508 (761)
Q Consensus 439 ~i~gl-~~~~GdtL~~~~~~~~l~~~~~p~Pv~~~~iep~~~----~d-----~~kl~~~L~~L~~eDPsl~v~~~~etg 508 (761)
++.|+ ++++|||||+..++..++++.+++|+++++|+|++. .| ..+|.++|.+|.++||+|++..+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 57788 899999999988888899999999999999999987 65 679999999999999999999999999
Q ss_pred cEEEEecchhHHHHHHHHHHhhcceeEEEcCceeeEEEeeeccceeeeeeecccCCCcceEEEEEEEEeCCCCCCCCcee
Q 004316 509 QTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEF 588 (761)
Q Consensus 509 e~il~g~GelHLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~i~P~~~~~~~~~~~ 588 (761)
|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~-------------------------------------- 120 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D-------------------------------------- 120 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T--------------------------------------
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C--------------------------------------
Confidence 9999999999999999999999 9999999999999996 0
Q ss_pred eecccCCCCCcchHHHHHHHHHHHHhcCCcCCCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeee
Q 004316 589 ENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPV 668 (761)
Q Consensus 589 ~~~~~~~~~~~~~~~~v~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi 668 (761)
| +|||||
T Consensus 121 ---------------------------G----------------------------------------------~llEPi 127 (332)
T 3e3x_A 121 ---------------------------G----------------------------------------------QLMEPF 127 (332)
T ss_dssp ---------------------------T----------------------------------------------EEEEEE
T ss_pred ---------------------------C----------------------------------------------EEECcE
Confidence 0 699999
Q ss_pred EEEEEeecccchhhHHHHHhcCCceeecccccC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEEEeCceecC-ChhH
Q 004316 669 MLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV-SQDV 746 (761)
Q Consensus 669 ~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v-~~~~ 746 (761)
|.++|.||++|+|.||++|++|||+|.+++..+ +.+.|+|++|+++|+||.++||++|+|+|+|++.|+||+++ |+++
T Consensus 128 ~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i 207 (332)
T 3e3x_A 128 ETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNI 207 (332)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSC
T ss_pred EEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcc
Confidence 999999999999999999999999999999874 68899999999999999999999999999999999999999 8876
Q ss_pred HH
Q 004316 747 QL 748 (761)
Q Consensus 747 ~~ 748 (761)
+.
T Consensus 208 ~~ 209 (332)
T 3e3x_A 208 GQ 209 (332)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.2e-35 Score=332.96 Aligned_cols=280 Identities=21% Similarity=0.269 Sum_probs=222.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee----------eeccCCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+..+||+++||+|+|||||+++|++.++.+.... .......+.+++|..++|+++|+|++.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 5678999999999999999999999988876521 011223456789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcc-------hhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChH-
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVP-RLAFINKLDRMGADPW- 210 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~- 210 (761)
+.++|||||||.+|...+..+++.+|++|+|||+++|+. .||++++..+...++| +|+|+||+|+...++.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 999999999999999999999999999999999999986 7999999999999999 8999999999655432
Q ss_pred HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q 004316 211 KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKL 290 (761)
Q Consensus 211 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l 290 (761)
+..+++.+.+
T Consensus 175 ~~~~~i~~~~---------------------------------------------------------------------- 184 (439)
T 3j2k_7 175 ERYEECKEKL---------------------------------------------------------------------- 184 (439)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 1122221111
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHH-----------HHHhhCCCCcccccccccccCc
Q 004316 291 GDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLD-----------GVLSYLPCPTEVSNYALDQKNN 359 (761)
Q Consensus 291 ~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld-----------~i~~~lPsp~~~~~~~~~~~~~ 359 (761)
..|+.... +.....+|++.+||++|.|++++++ .+.+.+|.|.
T Consensus 185 -~~~l~~~g-------------~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~------------ 238 (439)
T 3j2k_7 185 -VPFLKKVG-------------FNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFN------------ 238 (439)
T ss_pred -HHHHHHhc-------------ccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCc------------
Confidence 00000000 0001246899999999999998433 2345577664
Q ss_pred cceeeccCCCCCCcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEE
Q 004316 360 EEKVILSGNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVA 439 (761)
Q Consensus 360 ~~~~~~~~~~~~p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~ 439 (761)
.+.+.|+.+.|..++. ..|+++.|||.+|+|++||.|.+.+.+...+|+.|.. ...++++|.|||+|+
T Consensus 239 -------~~~~~p~r~~v~~~~~-~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG~~v~ 306 (439)
T 3j2k_7 239 -------RSVDGPIRLPIVDKYK-DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPGENLK 306 (439)
T ss_pred -------cCCCCCeEEEEEEEEc-CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCCCcce
Confidence 3467899999998875 2499999999999999999999999999999999874 456899999999999
Q ss_pred --Eecc---ccccCceeecCCCc
Q 004316 440 --VFGV---DCASGDTFTDGSVK 457 (761)
Q Consensus 440 --i~gl---~~~~GdtL~~~~~~ 457 (761)
+.|+ +++.||+|++.+++
T Consensus 307 ~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 307 IRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred EEEeccchhhcCCcEEecCCCCC
Confidence 7787 68899999987643
No 15
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3.5e-37 Score=355.17 Aligned_cols=330 Identities=22% Similarity=0.250 Sum_probs=243.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-------------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------- 137 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------- 137 (761)
+.++|+|+||+|||||||+++|+........ .+|+|.+.....+.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e---------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~ 62 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE---------------------AGGITQHIGATEIPMDVIEGICGDFLKK 62 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-------------------------CCCBTTEEEEEHHHHHHHSCGGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc---------------------CCceecccCeEEEeechhhhhccccccc
Confidence 4568999999999999999999864321100 023443333333322
Q ss_pred -----cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHH
Q 004316 138 -----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 212 (761)
Q Consensus 138 -----~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~ 212 (761)
....++|||||||.+|..++.++++.+|++|+|+|+++|++.||.++|+.+...++|+++|+||+|+.......
T Consensus 63 ~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~- 141 (594)
T 1g7s_A 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH- 141 (594)
T ss_dssp CGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC-
T ss_pred cccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc-
Confidence 22369999999999999999999999999999999999999999999999999999999999999986421000
Q ss_pred HHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q 004316 213 LDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGD 292 (761)
Q Consensus 213 ~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e 292 (761)
.+ .++++.......+.+..+.+.+.+.++++++
T Consensus 142 ------------------------------------------~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e 174 (594)
T 1g7s_A 142 ------------------------------------------EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHE 174 (594)
T ss_dssp ------------------------------------------TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111111223455566666666677777
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCC
Q 004316 293 MFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGP 372 (761)
Q Consensus 293 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p 372 (761)
.+++..... .++ .....+|++++||++|.||++|+++|..++|+|.+. ...+++++|
T Consensus 175 ~gl~~e~~~------~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~--------------~l~~~~~~p 231 (594)
T 1g7s_A 175 EGFESERFD------RVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE--------------QLKIEEDSP 231 (594)
T ss_dssp TTCEEEEGG------GCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG--------------GGEECTTSB
T ss_pred cCcchHHHH------HHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchh--------------hhccccCCC
Confidence 666532110 000 124678999999999999999999999998866421 012457889
Q ss_pred cEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEE--ecCcEEEEe--------cCceeecceec--CCCEEE
Q 004316 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKI--KVPRLVRMH--------SNEMEDIQEAH--AGQIVA 439 (761)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~--~i~~i~~~~--------g~~~~~v~~a~--aGdIv~ 439 (761)
+.++||+++.+++ |+++++||++|+|++||.|++.+.+..+ +|.+|+.+. +.+..++++|. +|++++
T Consensus 232 ~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~ 311 (594)
T 1g7s_A 232 ARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV 311 (594)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE
T ss_pred ceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE
Confidence 9999999999998 9999999999999999999998877644 999999873 66788999998 999999
Q ss_pred Eecc-ccccCceeecCCCcc--------ccccCCCCCceEEEEEEeCCCCCHhHHHHHHHHH
Q 004316 440 VFGV-DCASGDTFTDGSVKY--------TMTSMHVPEPVMSLAVQPVSKDSGGQFSKALNRF 492 (761)
Q Consensus 440 i~gl-~~~~GdtL~~~~~~~--------~l~~~~~p~Pv~~~~iep~~~~d~~kl~~~L~~L 492 (761)
+.|| ++.+||||+...+.- .+..+.+..+.+.+.|.+...+..+.|..+|+++
T Consensus 312 ~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 312 APGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp CSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred EcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999 889999999765431 1223334455677778888888888888888886
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.5e-34 Score=321.66 Aligned_cols=272 Identities=27% Similarity=0.382 Sum_probs=215.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+..+||+++||+|||||||+++|+..... .+.. ......+.+|..+.|+++|+|++.....+.++++.++||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~-~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAA---ENPN-VEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHH---SCTT-SCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhh---cCcc-ccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence 45789999999999999999999863110 0000 0000123578899999999999998888898899999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHhCCceeeee
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 228 (761)
|.+|...+.++++.+|++|+|+|+++|...|+.++|..+...++| +++|+||+|+.. +. +.++.+.+.
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~-~~~~~~~~~--------- 153 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DP-ELLDLVEME--------- 153 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CH-HHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cH-HHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999 789999999864 11 111111100
Q ss_pred ecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHH
Q 004316 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (761)
Q Consensus 229 ~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (761)
+.+.
T Consensus 154 ----------------------------------------------------------------------------~~~~ 157 (405)
T 2c78_A 154 ----------------------------------------------------------------------------VRDL 157 (405)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0000
Q ss_pred HHHHHhcCcceeEeecccCCCcc------------------hHHHHHHHHhhCCCCcccccccccccCccceeeccCCCC
Q 004316 309 IRRATVARKFIPVFMGSAFKNKG------------------VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPD 370 (761)
Q Consensus 309 l~~~~~~~~~~Pv~~~SA~~~~G------------------i~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~ 370 (761)
+...-.....+|++++||++|.| ++.|+++|.+++|.|. .+.+
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~-------------------~~~~ 218 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV-------------------RDVD 218 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC-------------------CCCS
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC-------------------CCCC
Confidence 00000001236899999999987 8999999999999885 3467
Q ss_pred CCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCC---eEEecCcEEEEecCceeecceecCCCEEEEe--cc-
Q 004316 371 GPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV- 443 (761)
Q Consensus 371 ~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl- 443 (761)
+|+.++|++++.+++ |++++|||++|+|++||.|.+.+.+ ...+|+.|... ..++++|.|||++++. |+
T Consensus 219 ~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~ 294 (405)
T 2c78_A 219 KPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVS 294 (405)
T ss_dssp SCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSCC
T ss_pred CCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCc
Confidence 899999999999887 9999999999999999999998877 57889888642 3689999999999865 65
Q ss_pred --ccccCceeecCC
Q 004316 444 --DCASGDTFTDGS 455 (761)
Q Consensus 444 --~~~~GdtL~~~~ 455 (761)
+++.||+|++.+
T Consensus 295 ~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 295 REEVERGQVLAKPG 308 (405)
T ss_dssp TTTCCTTCEEESTT
T ss_pred HhhcCceEEEEcCC
Confidence 789999999865
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.2e-34 Score=324.92 Aligned_cols=279 Identities=24% Similarity=0.279 Sum_probs=206.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--e-----eccC---CcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--E-----VRGR---DGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~--~-----v~~~---~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+..+||+++||+|+|||||+++|++.++.+.... . ...+ ..+.+++|..++|+++|+|++.....+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 4678999999999999999999999876654321 0 0001 0123578999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCCh-H
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADP-W 210 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~-~ 210 (761)
+.++|||||||.+|...+..+++.+|++|+|+|+++| +..|+++++..+...++| +++|+||+|+..+++ .
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 788999999999999985 789999999976432 1
Q ss_pred HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q 004316 211 KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKL 290 (761)
Q Consensus 211 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l 290 (761)
+.++.+.+.+
T Consensus 164 ~~~~~~~~~i---------------------------------------------------------------------- 173 (435)
T 1jny_A 164 KRYKEIVDQV---------------------------------------------------------------------- 173 (435)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 1111111110
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchH------------HHHHHHHhhCCCCcccccccccccC
Q 004316 291 GDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYALDQKN 358 (761)
Q Consensus 291 ~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------~Lld~i~~~lPsp~~~~~~~~~~~~ 358 (761)
.+.++..-....-+|++.+||++|.|+. .|++++.. +|.|.
T Consensus 174 ---------------~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~----------- 226 (435)
T 1jny_A 174 ---------------SKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPP----------- 226 (435)
T ss_dssp ---------------HHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCC-----------
T ss_pred ---------------HHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCC-----------
Confidence 0000000000012688999999999996 68888654 55554
Q ss_pred ccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCE
Q 004316 359 NEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQI 437 (761)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdI 437 (761)
...+.|+.+.|..++..++ |++++|||++|+|++||.|++.+.+...+|++|... ..++++|.|||+
T Consensus 227 --------~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG~~ 294 (435)
T 1jny_A 227 --------KPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPGDN 294 (435)
T ss_dssp --------CGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTTCE
T ss_pred --------CCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCCCE
Confidence 1235688888888888887 999999999999999999999999999999999642 468999999999
Q ss_pred EEE--ecc---ccccCceeecCCCc
Q 004316 438 VAV--FGV---DCASGDTFTDGSVK 457 (761)
Q Consensus 438 v~i--~gl---~~~~GdtL~~~~~~ 457 (761)
|++ .|+ ++++||+|++.+.+
T Consensus 295 v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 295 IGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEEEecCCHHHcCCccEecCCCCC
Confidence 997 454 78999999987543
No 18
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=1.8e-34 Score=319.89 Aligned_cols=269 Identities=25% Similarity=0.323 Sum_probs=211.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..||+++||+|||||||+++|+...... +.. .....+.+|..+.|+++|+|++.....+.++++.++|||||||.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~---g~~--~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEG---GGA--KFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHT---TSB--CCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhc---Ccc--ccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 4689999999999999999998642110 000 00012347888889999999999888888888999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeec
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 230 (761)
+|...+..+++.+|++|+|+|+++|...||.++|..+...++| +++|+||+|+.. + .+.++.+.+.
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~-~~~~~~~~~~----------- 144 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-D-SEMVELVELE----------- 144 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-C-HHHHHHHHHH-----------
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-C-HHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999 589999999864 1 1111111100
Q ss_pred CCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004316 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (761)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (761)
+.+.+.
T Consensus 145 --------------------------------------------------------------------------~~~~l~ 150 (397)
T 1d2e_A 145 --------------------------------------------------------------------------IRELLT 150 (397)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 000000
Q ss_pred HHHhcCcceeEeecccCCCcc----------hHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEee
Q 004316 311 RATVARKFIPVFMGSAFKNKG----------VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKL 380 (761)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~G----------i~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 380 (761)
..-.....+|++++||++|.| +++|+++|.+++|.|. .+.++|+.++|+++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~-------------------~~~~~p~~~~v~~v 211 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT-------------------RDLEKPFLLPVESV 211 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC-------------------CCTTSCCEEECCEE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC-------------------CCCCCcEEEEEEEE
Confidence 000011236899999999764 9999999999999885 34678999999999
Q ss_pred eeccC-ccEEEEEEEcceecCCCEEEecCCC--eEEecCcEEEEecCceeecceecCCCEEEEe--cc---ccccCceee
Q 004316 381 EEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV---DCASGDTFT 452 (761)
Q Consensus 381 ~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~GdtL~ 452 (761)
+.+++ |++++|||++|+|++||.|.+.+.+ ...+|+.|... ..++++|.|||++++. |+ +++.||+|+
T Consensus 212 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 212 YSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp EEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEe
Confidence 99987 9999999999999999999988765 67788887642 3689999999999865 65 789999999
Q ss_pred cCC
Q 004316 453 DGS 455 (761)
Q Consensus 453 ~~~ 455 (761)
+.+
T Consensus 288 ~~~ 290 (397)
T 1d2e_A 288 KPG 290 (397)
T ss_dssp STT
T ss_pred CCC
Confidence 865
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-35 Score=336.46 Aligned_cols=276 Identities=21% Similarity=0.245 Sum_probs=184.4
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeee-------ee---ccCCcccccccChhhhhhhcceeeeceEEEee
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH-------EV---RGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~-------~v---~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (761)
..+.++||+|+||+|||||||+++|++.++.+.... .. .....+.+++|..+.|+++|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 346789999999999999999999999887765420 00 11123467899999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-------chhHHHHHHHHHHcCCC-EEEEEeCCCCCCCCh
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVP-RLAFINKLDRMGADP 209 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 209 (761)
+++.++|||||||.+|...+..+++.+|++|||||+++|. ..||.+++..+...++| +|+|+||+|+...+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999864 89999999999999998 888999999975442
Q ss_pred H---HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcC
Q 004316 210 W---KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (761)
Q Consensus 210 ~---~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (761)
. ...+++...+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 2 12222222210
Q ss_pred CHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchH--------------HHHHHHHhhCCCCcccccc
Q 004316 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ--------------PLLDGVLSYLPCPTEVSNY 352 (761)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~--------------~Lld~i~~~lPsp~~~~~~ 352 (761)
..... ....+|++++||++|.||. .|++.|..++| |.
T Consensus 348 ---------~~~g~--------------~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~----- 398 (592)
T 3mca_A 348 ---------KMVGF--------------KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PE----- 398 (592)
T ss_dssp ---------TTSCC--------------CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CS-----
T ss_pred ---------HhhCC--------------CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-cc-----
Confidence 00000 0123688999999999998 79999998887 32
Q ss_pred cccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecc-
Q 004316 353 ALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQ- 430 (761)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~- 430 (761)
.+.+.|+.+.|..++.. + |+++.|||.+|+|++||.|.+.+.+...+|+.|.. ...+++
T Consensus 399 --------------~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~----~~~~~~~ 459 (592)
T 3mca_A 399 --------------KPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR----NSDPSST 459 (592)
T ss_dssp --------------CTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC----SSSCSCC
T ss_pred --------------ccccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE----cCccCcc
Confidence 34678999999999988 6 99999999999999999999999999899999884 346899
Q ss_pred eecCCCEEE--Eecc---ccccCceeecCCC
Q 004316 431 EAHAGQIVA--VFGV---DCASGDTFTDGSV 456 (761)
Q Consensus 431 ~a~aGdIv~--i~gl---~~~~GdtL~~~~~ 456 (761)
+|.|||+|+ +.|+ +++.||+|++.+.
T Consensus 460 ~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~ 490 (592)
T 3mca_A 460 WAVAGDTVTLQLADIEVNQLRPGDILSNYEN 490 (592)
T ss_dssp EEETTCEEEEEESSSCGGGCCTTCEEECSSS
T ss_pred eecCCCEEEEEEccccccccceEEEeccCCC
Confidence 999999998 4676 6889999998754
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.6e-33 Score=318.07 Aligned_cols=279 Identities=21% Similarity=0.269 Sum_probs=186.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeee-------e---eccCCcccccccChhhhhhhcceeeeceEEEeec
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH-------E---VRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK 138 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~-------~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 138 (761)
.+..+||+++||+|||||||+++|++.+|.+.... . -...+.+.+.+|..+.|+++|+|++.....+.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 35678999999999999999999999888764310 0 0011234567899999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcc-------hhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVP-RLAFINKLDRMGADPW 210 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~ 210 (761)
++.++|||||||.+|...+.++++.+|++|+|||+++|+. .||++++..+...++| +|+|+||+|+...++.
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 9999999999999999999999999999999999999973 7999999999999998 8999999999654421
Q ss_pred -HHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHH
Q 004316 211 -KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDK 289 (761)
Q Consensus 211 -~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~ 289 (761)
+.++.+.+.+
T Consensus 200 ~~~~~~i~~e~--------------------------------------------------------------------- 210 (467)
T 1r5b_A 200 EERYKECVDKL--------------------------------------------------------------------- 210 (467)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 1122211110
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhc--CcceeEeecccCCCcchHH--------------HHHHHHhhCCCCccccccc
Q 004316 290 LGDMFLSDEPISSGDLEEAIRRATVA--RKFIPVFMGSAFKNKGVQP--------------LLDGVLSYLPCPTEVSNYA 353 (761)
Q Consensus 290 l~e~~l~~~~~~~~~l~~~l~~~~~~--~~~~Pv~~~SA~~~~Gi~~--------------Lld~i~~~lPsp~~~~~~~ 353 (761)
.+.+...... ...+|++.+||++|.|+.+ |++.| +.+|.|.
T Consensus 211 ----------------~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~------ 267 (467)
T 1r5b_A 211 ----------------SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLE------ 267 (467)
T ss_dssp ----------------HHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCH------
T ss_pred ----------------HHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCc------
Confidence 0000000000 0136889999999999875 45554 5577664
Q ss_pred ccccCccceeeccCCCCCCcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceec
Q 004316 354 LDQKNNEEKVILSGNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (761)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~ 433 (761)
.+.++||.+.|..++.+ .|+++.|||.+|+|++||.|.+.+.+...+|+.|+. ....++++|.
T Consensus 268 -------------~~~~~p~~~~v~~~~~~-~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~---~~~~~~~~a~ 330 (467)
T 1r5b_A 268 -------------RKVNAPFIMPIASKYKD-LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYD---EADEEISSSI 330 (467)
T ss_dssp -------------HHHTSCCEEECCEEEES-SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEEC---TTCCEESEEE
T ss_pred -------------CCCCCCcEEEEEEEEeC-CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEec---cCCcEeeEEc
Confidence 23467999999888654 599999999999999999999999888888988863 2356899999
Q ss_pred CCCEEEE--ec-c-ccccCceeecCCC
Q 004316 434 AGQIVAV--FG-V-DCASGDTFTDGSV 456 (761)
Q Consensus 434 aGdIv~i--~g-l-~~~~GdtL~~~~~ 456 (761)
|||+|++ .| . +++.||+|++.+.
T Consensus 331 aG~~v~i~l~g~~~~i~rG~vl~~~~~ 357 (467)
T 1r5b_A 331 CGDQVRLRVRGDDSDVQTGYVLTSTKN 357 (467)
T ss_dssp TTCEEEEEEESCCTTCCTTCEEECSSS
T ss_pred CCCEEEEEEeccHhhCCceEEEeCCCC
Confidence 9999997 56 4 7899999998653
No 21
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=309.01 Aligned_cols=277 Identities=23% Similarity=0.257 Sum_probs=208.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee------------eeeccCCcccccccChhhhhhhcceeeeceEEEee
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI------------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (761)
+..+||+++||+|||||||+++|++..+.+... +.......+.+.+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 457899999999999999999999887655321 11111112235689999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 216 (761)
++..++|||||||.+|...+..+++.+|++|+|+|+++|...|+.+++..+...++| +|+|+||+|+...+.+ .++++
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~-~~~~i 180 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER-VFESI 180 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH-HHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 7899999999754321 11111
Q ss_pred HHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Q 004316 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (761)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (761)
.+.+ ..+++
T Consensus 181 ~~~~-----------------------------------------------------------------------~~~~~ 189 (434)
T 1zun_B 181 KADY-----------------------------------------------------------------------LKFAE 189 (434)
T ss_dssp HHHH-----------------------------------------------------------------------HHHHH
T ss_pred HHHH-----------------------------------------------------------------------HHHHH
Confidence 1110 00000
Q ss_pred CCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------HHHHHHhhCCCCcccccccccccCccceee
Q 004316 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (761)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 364 (761)
... .....+|++.+||++|.|+++ |++. ++.+|.|.
T Consensus 190 ~~g--------------~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~----------------- 237 (434)
T 1zun_B 190 GIA--------------FKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIAS----------------- 237 (434)
T ss_dssp TTT--------------CCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTT-----------------
T ss_pred HhC--------------CCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCcc-----------------
Confidence 000 001236899999999999987 5554 45566654
Q ss_pred ccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc
Q 004316 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV 443 (761)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl 443 (761)
.+.+.|+.+.|..++...+ |+...|||.+|+|++||.|.+.+.++..+|+.|.... .++++|.|||++++.+.
T Consensus 238 --~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~ 311 (434)
T 1zun_B 238 --DRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTME 311 (434)
T ss_dssp --CCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEES
T ss_pred --cCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEEeC
Confidence 2456789998888776555 7888999999999999999999999888999998543 47999999999998764
Q ss_pred ---ccccCceeecCCC
Q 004316 444 ---DCASGDTFTDGSV 456 (761)
Q Consensus 444 ---~~~~GdtL~~~~~ 456 (761)
+++.||+|+..+.
T Consensus 312 ~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 312 DEIDISRGDLLVHADN 327 (434)
T ss_dssp SCCCCCTTCEEEETTS
T ss_pred CccccCCccEEECCCC
Confidence 5789999998654
No 22
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.6e-32 Score=311.80 Aligned_cols=282 Identities=20% Similarity=0.228 Sum_probs=203.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee---------eee-ccCCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI---------HEV-RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~---------~~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+...||+++||+|+|||||+++|++..+.+... ... .+...+.+++|....|+++|+|++.....+.+++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 457799999999999999999999987766531 000 1122346789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHH
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWK 211 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 211 (761)
+.++|||||||.+|...+..+++.+|++|+|+|+++| +..|+.+++..+...++| +|+|+||+|+...+. .
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~-~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-Q 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH-H
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH-H
Confidence 9999999999999999999999999999999999998 668999999999999865 899999999865331 1
Q ss_pred HHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q 004316 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (761)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (761)
.++++.+.+
T Consensus 190 ~~~~i~~~~----------------------------------------------------------------------- 198 (483)
T 3p26_A 190 RFEEIKSKL----------------------------------------------------------------------- 198 (483)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH------------------HHHHHHhhCCC--Cccccc
Q 004316 292 DMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------------LLDGVLSYLPC--PTEVSN 351 (761)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~------------------Lld~i~~~lPs--p~~~~~ 351 (761)
.+.+...-.....+|++.+||++|.||++ +|+.+...+|. |.
T Consensus 199 --------------~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~---- 260 (483)
T 3p26_A 199 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEG---- 260 (483)
T ss_dssp --------------HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTT----
T ss_pred --------------HHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccccc----
Confidence 00000000011247899999999999974 34444444443 22
Q ss_pred ccccccCccceeeccCCCCCCcEEEEEeeeecc---C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEe----c
Q 004316 352 YALDQKNNEEKVILSGNPDGPLVALAFKLEEGR---F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMH----S 423 (761)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~----g 423 (761)
.+.+.|+.+.|..++..+ . |+++.|||.+|+|++||.|.+.+.+...+|+.|.... |
T Consensus 261 ---------------~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~ 325 (483)
T 3p26_A 261 ---------------INKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQS 325 (483)
T ss_dssp ---------------CCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC---
T ss_pred ---------------ccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccc
Confidence 246789999999998865 3 8999999999999999999999999999999998652 3
Q ss_pred CceeecceecCCCEEEE--ecc---ccccCceeecCCC
Q 004316 424 NEMEDIQEAHAGQIVAV--FGV---DCASGDTFTDGSV 456 (761)
Q Consensus 424 ~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~~~~~ 456 (761)
..+.++++|.|||+|++ .++ +++.||+|++.++
T Consensus 326 ~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 326 TNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp --CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 44678999999999997 343 7899999998765
No 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=6.5e-33 Score=303.36 Aligned_cols=240 Identities=14% Similarity=0.081 Sum_probs=195.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
+||+++||+|+|||||+++|+ ++|+|++.....+.++++.++|||||||.+
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~-----------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG-----------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS-----------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHH-----------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 399999999999999999994 378999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEe-CCCCCCCCh-HHHHHHHHHHhCCceeeeee
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFIN-KLDRMGADP-WKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviN-K~D~~~~~~-~~~~~~i~~~l~~~~~~~~~ 229 (761)
|...+..+++.+|++|+||| ..|+..||++++..+...++|. |+++| |+|+ ..+. ++..+++++.++.
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~------- 143 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG------- 143 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh-------
Confidence 99999999999999999999 9999999999999999999999 99999 9998 3221 1222333322210
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
.
T Consensus 144 --------------------------------------------------------------------~----------- 144 (370)
T 2elf_A 144 --------------------------------------------------------------------T----------- 144 (370)
T ss_dssp --------------------------------------------------------------------S-----------
T ss_pred --------------------------------------------------------------------c-----------
Confidence 0
Q ss_pred HHHHhcCcceeEee--cccCC---CcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeecc
Q 004316 310 RRATVARKFIPVFM--GSAFK---NKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~--~SA~~---~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 384 (761)
....+|+++ +||++ |.|+++|++.|.+++|+|..... .....|+.++|..++..+
T Consensus 145 -----~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~---------------~~~~~p~r~~v~~vf~~~ 204 (370)
T 2elf_A 145 -----VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENA---------------ELNSLPARIFIDHAFNVT 204 (370)
T ss_dssp -----TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHH---------------HGGGSCCEEEEEEEECCC
T ss_pred -----CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCc---------------ccccccccccceeEEEcC
Confidence 012478999 99999 99999999999999987621100 002346666677777777
Q ss_pred C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEe--cc---ccccCceeec
Q 004316 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV---DCASGDTFTD 453 (761)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~GdtL~~ 453 (761)
+ |++++|||++|++++||.|++.+.+...+|++|.. + ..++++|.|||+|++. |+ ++++||+|++
T Consensus 205 ~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 205 GKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp ---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 7 99999999999999999999999999999999864 3 3689999999999975 54 7899999997
No 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.9e-32 Score=305.20 Aligned_cols=255 Identities=22% Similarity=0.297 Sum_probs=195.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-----------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (761)
+..+||+++||+|||||||+++|+. ...|..+.|+++|+|+......+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g------------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~ 69 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTG------------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS 69 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT------------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC------------------CccccChhhhcCCcEEEEeeeeeeccccccccccccc
Confidence 4578999999999999999999951 13466778899999998776655441
Q ss_pred ------------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHHHcCC-CEEEEEeCCCC
Q 004316 139 ------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEV-PRLAFINKLDR 204 (761)
Q Consensus 139 ------------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~-p~iiviNK~D~ 204 (761)
...++|||||||.+|...+.+++..+|++|+|||+++|+ +.||.+++..+...++ |+++|+||+|+
T Consensus 70 ~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 70 PVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp SBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 178999999999999999999999999999999999998 8999999998888886 67899999998
Q ss_pred CCCCh-HHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHH
Q 004316 205 MGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELV 283 (761)
Q Consensus 205 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~ 283 (761)
...+. .+.++++++.
T Consensus 150 ~~~~~~~~~~~~i~~~---------------------------------------------------------------- 165 (410)
T 1kk1_A 150 VDKEKALENYRQIKEF---------------------------------------------------------------- 165 (410)
T ss_dssp SCHHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 64321 1112222111
Q ss_pred hcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCcccee
Q 004316 284 SEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKV 363 (761)
Q Consensus 284 ~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 363 (761)
+.+. ....+|++++||++|.|++.|+++|.+++|.|.
T Consensus 166 -----------l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~---------------- 202 (410)
T 1kk1_A 166 -----------IEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPK---------------- 202 (410)
T ss_dssp -----------HTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC----------------
T ss_pred -----------HHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc----------------
Confidence 1110 012468999999999999999999999999885
Q ss_pred eccCCCCCCcEEEEEeeee--------ccC-ccEEEEEEEcceecCCCEEEecCCCe------------EEecCcEEEEe
Q 004316 364 ILSGNPDGPLVALAFKLEE--------GRF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVRMH 422 (761)
Q Consensus 364 ~~~~~~~~p~~~~V~k~~~--------~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~i~~~~ 422 (761)
.+.+.|+.++|...+. +++ |.+++|||++|+|++||.|.+.+.++ ..+|..|.
T Consensus 203 ---~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~--- 276 (410)
T 1kk1_A 203 ---RDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ--- 276 (410)
T ss_dssp ---CCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE---
T ss_pred ---cccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE---
Confidence 2456788888887764 344 88999999999999999999876542 23555554
Q ss_pred cCceeecceecCCCEEEEe-----cc---ccccCceeecCCC
Q 004316 423 SNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGSV 456 (761)
Q Consensus 423 g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~~ 456 (761)
. ...++++|.|||++++. ++ ++..|++|+.++.
T Consensus 277 ~-~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 277 A-GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp E-TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred E-CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCC
Confidence 2 35689999999988874 23 4667999987653
No 25
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.4e-32 Score=327.50 Aligned_cols=273 Identities=24% Similarity=0.312 Sum_probs=200.6
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.+...||+++||+|+|||||+++|+...... +.. .....+.+|..+.|+++|+|++.....++++++.++|||||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~---G~a--~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP 367 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKT---YGG--AARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP 367 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHH---SCC-----------------------CCSCEEEECSSCEEEEEECC
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccc---ccc--ccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC
Confidence 3467899999999999999999998642100 000 00002257888999999999999988898899999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHHHHHhCCceeee
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 227 (761)
||.+|...+..+++.+|++|+|||+++|+..||.+++..+...++| +|+|+||+|+... .+.++.+.+.
T Consensus 368 GHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d--~e~le~i~eE-------- 437 (1289)
T 3avx_A 368 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD--EELLELVEME-------- 437 (1289)
T ss_dssp CHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC--HHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc--hhhHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999999 6899999999641 1111111100
Q ss_pred eecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHH
Q 004316 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (761)
Q Consensus 228 ~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (761)
+.+
T Consensus 438 -----------------------------------------------------------------------------i~e 440 (1289)
T 3avx_A 438 -----------------------------------------------------------------------------VRE 440 (1289)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHHHHhcCcceeEeecccCCC--------cchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEe
Q 004316 308 AIRRATVARKFIPVFMGSAFKN--------KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (761)
Q Consensus 308 ~l~~~~~~~~~~Pv~~~SA~~~--------~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (761)
.+...-.....+|++.+||++| .||+.|++.|.+++|.|. .+.++|+.+.|..
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~-------------------r~~d~Pfr~pId~ 501 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE-------------------RAIDKPFLLPIED 501 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC-------------------CGGGSCCEEECCE
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCc-------------------cccccceeeeccc
Confidence 0000000112368999999999 589999999999999875 2356899999999
Q ss_pred eeeccC-ccEEEEEEEcceecCCCEEEecCCC--eEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccCcee
Q 004316 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTF 451 (761)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL 451 (761)
++.+++ |++++|||++|+|++||.|.+.+.+ ...+|+.|... ..++++|.|||+|++ .|+ +++.||+|
T Consensus 502 Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL 577 (1289)
T 3avx_A 502 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVL 577 (1289)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred cccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEE
Confidence 998887 9999999999999999999998877 67788888532 357899999999886 466 78999999
Q ss_pred ecCCC
Q 004316 452 TDGSV 456 (761)
Q Consensus 452 ~~~~~ 456 (761)
++.+.
T Consensus 578 ~~~~~ 582 (1289)
T 3avx_A 578 AKPGT 582 (1289)
T ss_dssp ESTTS
T ss_pred ecCCC
Confidence 98653
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.8e-32 Score=307.25 Aligned_cols=276 Identities=24% Similarity=0.302 Sum_probs=214.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeee---------ee-ccCCcccccccChhhhhhhcceeeeceEEEeecCe
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------EV-RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY 140 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~---------~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 140 (761)
...||+++||+|||||||+++|++..+.+.... +. .+...+.+++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 467999999999999999999998876554210 00 01112345789999999999999999999999999
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcch-------hHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHH
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQS-------QSITVDRQMRRYEVP-RLAFINKLDRMGADPWKV 212 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~-------qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~ 212 (761)
.++|||||||.+|...+..+++.+|++|+|||+++|... |+.+++..+...++| +|+|+||+|+...+.. .
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~-~ 164 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES-R 164 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH-H
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH-H
Confidence 999999999999999999999999999999999998766 999999999999998 7899999998643221 1
Q ss_pred HHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q 004316 213 LDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGD 292 (761)
Q Consensus 213 ~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e 292 (761)
++.+.+.
T Consensus 165 ~~~i~~~------------------------------------------------------------------------- 171 (458)
T 1f60_A 165 FQEIVKE------------------------------------------------------------------------- 171 (458)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchH------------------------HHHHHHHhhCCCCcc
Q 004316 293 MFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------------------PLLDGVLSYLPCPTE 348 (761)
Q Consensus 293 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~------------------------~Lld~i~~~lPsp~~ 348 (761)
+.+.+...-.....+|++.+||++|.|+. .|++++. .+|.|.
T Consensus 172 ------------~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~-~~~~p~- 237 (458)
T 1f60_A 172 ------------TSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPS- 237 (458)
T ss_dssp ------------HHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHH-TSCCCC-
T ss_pred ------------HHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhh-ccCCCc-
Confidence 00000000000012678888999999985 4777754 455553
Q ss_pred cccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCcee
Q 004316 349 VSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEME 427 (761)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~ 427 (761)
...+.|+.++|..++..++ |+++.|||.+|+++.||.|.+.+.+...+|.+|.. ...
T Consensus 238 ------------------~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~ 295 (458)
T 1f60_A 238 ------------------RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM----HHE 295 (458)
T ss_dssp ------------------CCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE----TTE
T ss_pred ------------------ccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE----CCe
Confidence 3467899999999999887 99999999999999999999999998889999874 235
Q ss_pred ecceecCCCEEEE--ecc---ccccCceeecCCC
Q 004316 428 DIQEAHAGQIVAV--FGV---DCASGDTFTDGSV 456 (761)
Q Consensus 428 ~v~~a~aGdIv~i--~gl---~~~~GdtL~~~~~ 456 (761)
++++|.|||++++ .|+ +++.||+|+..++
T Consensus 296 ~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 296 QLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 7999999999886 466 7889999998754
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.1e-32 Score=314.88 Aligned_cols=287 Identities=20% Similarity=0.220 Sum_probs=218.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee---------eee-ccCCcccccccChhhhhhhcceeeeceEEEeecC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI---------HEV-RGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~---------~~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (761)
+...||+++||+|+|||||+++|++..+.+... ... .+...+.+++|....|+.+|+|++.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 446799999999999999999999877765431 000 1122346789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------cchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHH
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWK 211 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 211 (761)
+.++|||||||.+|...+..+++.+|++|+|||+++| ...|+.+++..+...++| +|+|+||+|+...+. .
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~-~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-Q 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH-H
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH-H
Confidence 9999999999999999999999999999999999987 568999999999999987 788999999975331 1
Q ss_pred HHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q 004316 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (761)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (761)
.++++.+.+
T Consensus 324 ~~~ei~~~l----------------------------------------------------------------------- 332 (611)
T 3izq_1 324 RFEEIKSKL----------------------------------------------------------------------- 332 (611)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHH---------------HHHHHHhhCCCCcccccccccc
Q 004316 292 DMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP---------------LLDGVLSYLPCPTEVSNYALDQ 356 (761)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~---------------Lld~i~~~lPsp~~~~~~~~~~ 356 (761)
...+...-.....+|++.+||++|.||.+ |++.+....+.+. ...
T Consensus 333 --------------~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p-~~~----- 392 (611)
T 3izq_1 333 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKIS-KEN----- 392 (611)
T ss_dssp --------------HHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCC-CSS-----
T ss_pred --------------HHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhccc-ccC-----
Confidence 00000000011246899999999999974 3444433221110 000
Q ss_pred cCccceeeccCCCCCCcEEEEEeeeecc---C-ccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEe----cCceee
Q 004316 357 KNNEEKVILSGNPDGPLVALAFKLEEGR---F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMH----SNEMED 428 (761)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~~~V~k~~~~~---~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~----g~~~~~ 428 (761)
.....+.|+.+.|..++..+ + |+++.|||.+|+|++||.|.+.+.+...+|+.|.... |..+.+
T Consensus 393 --------p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~ 464 (611)
T 3izq_1 393 --------EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEE 464 (611)
T ss_dssp --------SCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCC
T ss_pred --------cccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccc
Confidence 01346789999999998875 4 8999999999999999999999999999999998552 455789
Q ss_pred cceecCCCEEEE--ecc---ccccCceeecCCC
Q 004316 429 IQEAHAGQIVAV--FGV---DCASGDTFTDGSV 456 (761)
Q Consensus 429 v~~a~aGdIv~i--~gl---~~~~GdtL~~~~~ 456 (761)
+++|.|||+|++ .|+ +++.||+|++.+.
T Consensus 465 v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 465 TDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 999999999997 454 7899999998765
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.98 E-value=3.8e-31 Score=294.31 Aligned_cols=254 Identities=22% Similarity=0.304 Sum_probs=186.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee------------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------ 137 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------ 137 (761)
+...||+++||+|||||||+++|+. ...+....|+++|+|+........+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g------------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~ 67 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG------------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTK 67 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS------------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC------------------CccccCcccccCCcEEEeccccccccccccccccccc
Confidence 4578999999999999999999951 2345667888899999876554332
Q ss_pred ---c--------CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHHHcCC-CEEEEEeCCCC
Q 004316 138 ---K--------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEV-PRLAFINKLDR 204 (761)
Q Consensus 138 ---~--------~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~-p~iiviNK~D~ 204 (761)
. .+.++|||||||.+|...+.+++..+|++|+|+|+++|. ..||.+++..+...++ |+++|+||+|+
T Consensus 68 ~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 68 PRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp SBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred ccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence 1 278999999999999999999999999999999999998 8999999998888876 68999999999
Q ss_pred CCCCh-HHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHH
Q 004316 205 MGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELV 283 (761)
Q Consensus 205 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~ 283 (761)
...+. ...++++.+.+.
T Consensus 148 ~~~~~~~~~~~~i~~~l~-------------------------------------------------------------- 165 (408)
T 1s0u_A 148 VDEKQAEENYEQIKEFVK-------------------------------------------------------------- 165 (408)
T ss_dssp SCTTTTTTHHHHHHHHHT--------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHh--------------------------------------------------------------
Confidence 75431 122222222211
Q ss_pred hcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCcccee
Q 004316 284 SEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKV 363 (761)
Q Consensus 284 ~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 363 (761)
+. ....+|++.+||++|.||+.|+++|.+++|.|.
T Consensus 166 -------------~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~---------------- 200 (408)
T 1s0u_A 166 -------------GT----------------IAENAPIIPISAHHEANIDVLLKAIQDFIPTPK---------------- 200 (408)
T ss_dssp -------------TS----------------TTTTCCEEEC------CHHHHHHHHHHHSCCCC----------------
T ss_pred -------------hc----------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc----------------
Confidence 00 012368899999999999999999999999875
Q ss_pred eccCCCCCCcEEEEEeeeec--------cC-ccEEEEEEEcceecCCCEEEecCCCe------------EEecCcEEEEe
Q 004316 364 ILSGNPDGPLVALAFKLEEG--------RF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVRMH 422 (761)
Q Consensus 364 ~~~~~~~~p~~~~V~k~~~~--------~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~i~~~~ 422 (761)
.+.+.|+.++|..++.. ++ |.++.|||++|+|++||.|.+.+.++ ..+|+.|..
T Consensus 201 ---~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~-- 275 (408)
T 1s0u_A 201 ---RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA-- 275 (408)
T ss_dssp ---CCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE--
T ss_pred ---ccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE--
Confidence 34577899999877643 33 78999999999999999999876432 468888874
Q ss_pred cCceeecceecCCCEEEEe-----cc---ccccCceeecCC
Q 004316 423 SNEMEDIQEAHAGQIVAVF-----GV---DCASGDTFTDGS 455 (761)
Q Consensus 423 g~~~~~v~~a~aGdIv~i~-----gl---~~~~GdtL~~~~ 455 (761)
...++++|.|||.+++. ++ ++..|++|+.++
T Consensus 276 --~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~ 314 (408)
T 1s0u_A 276 --GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPG 314 (408)
T ss_dssp --TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred --CCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCC
Confidence 24689999999999984 33 567899999765
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=7e-32 Score=305.46 Aligned_cols=257 Identities=24% Similarity=0.290 Sum_probs=190.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..||+++||+|+|||||+++|+... . ...+|..+.|+++|+|++.....+.++++.++|||||||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~-----------~---~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA-----------S---TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC-----------c---ccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 35689999999999999999996321 0 235777888999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC-hHHHHHHHHHHhCCceeeeee
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~ 229 (761)
.+|...+..+++.+|++|+|+|+++|+..||.+++..+...++|.++|+||+|+...+ .+...+++.+.+
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l--------- 154 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSIL--------- 154 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999999999999999986421 111111111111
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
T Consensus 155 -------------------------------------------------------------------------------- 154 (482)
T 1wb1_A 155 -------------------------------------------------------------------------------- 154 (482)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccE
Q 004316 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQL 388 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l 388 (761)
... .....+|++.+||++|.|+++|+++|.+.+|.|.- ..+.++|+.+.|..++..++ |++
T Consensus 155 ~~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~-----------------~~~~~~~~~~~v~~v~~~~g~G~v 216 (482)
T 1wb1_A 155 QST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEI-----------------IRNTESYFKMPLDHAFPIKGAGTV 216 (482)
T ss_dssp HHS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCC-----------------CCCSSSCCBCBCSCEECCSSCCCE
T ss_pred hhh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccc-----------------cccccccccccceeEEEecCCceE
Confidence 000 00013688899999999999999999998875510 02355677777777777776 999
Q ss_pred EEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---ccccCceee
Q 004316 389 TYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV---DCASGDTFT 452 (761)
Q Consensus 389 ~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~GdtL~ 452 (761)
+.+||.+|++++||.|.+.+.+...+|+.|.. ...++++|.|||.+++ .|+ +++.||+|+
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMSTKVRSIQY----FKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCCEEECCBCG----GGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE----CCeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 99999999999999999998888888888863 2457899999999886 476 578999994
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=4.7e-30 Score=285.07 Aligned_cols=267 Identities=21% Similarity=0.246 Sum_probs=192.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-----cCeEEEE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQINI 144 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~l 144 (761)
+...||+++||+|||||||+++|+...... ..+... .........+..++++.......+.+ ....++|
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAE-----TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEE-----EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccc-----cceeeccccccccceecccccccccccccccccceEEE
Confidence 345689999999999999999997421110 000000 00001111122344443332221222 2378999
Q ss_pred EeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHHHHHHHcCC-CEEEEEeCCCCCCCCh-HHHHHHHHHHhC
Q 004316 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEV-PRLAFINKLDRMGADP-WKVLDQARSKLR 221 (761)
Q Consensus 145 iDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~-p~iiviNK~D~~~~~~-~~~~~~i~~~l~ 221 (761)
||||||.+|...+..+++.+|++|+|+|+.++. ..|+.+++..+...+. |+++|+||+|+...+. .+..+++.+.+.
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 8999999999988876 7899999999864321 111222221110
Q ss_pred CceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCC
Q 004316 222 HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPIS 301 (761)
Q Consensus 222 ~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~ 301 (761)
+
T Consensus 160 ---------------------------------------------------------------------------~---- 160 (403)
T 3sjy_A 160 ---------------------------------------------------------------------------G---- 160 (403)
T ss_dssp ---------------------------------------------------------------------------T----
T ss_pred ---------------------------------------------------------------------------h----
Confidence 0
Q ss_pred hhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeee
Q 004316 302 SGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (761)
Q Consensus 302 ~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (761)
.....+|++.+||++|.|+++|+++|.+++|.|. .+.+.|+.++|.+++
T Consensus 161 ------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~-------------------~~~~~~~~~~v~~~~ 209 (403)
T 3sjy_A 161 ------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY-------------------RDLSQKPVMLVIRSF 209 (403)
T ss_dssp ------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEE
T ss_pred ------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC-------------------CCCCCCcEEEEEEEE
Confidence 0012468999999999999999999999999875 346789999998876
Q ss_pred e--------ccC-ccEEEEEEEcceecCCCEEEecCCCe------------EEecCcEEEEecCceeecceecCCCEEEE
Q 004316 382 E--------GRF-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (761)
Q Consensus 382 ~--------~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGdIv~i 440 (761)
. +++ |.+++|||++|++++||.|.+.+.++ ..+|+.|.. ...++++|.|||+|++
T Consensus 210 ~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~ 285 (403)
T 3sjy_A 210 DVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAI 285 (403)
T ss_dssp CCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEE
T ss_pred eecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEE
Confidence 4 344 89999999999999999999977553 357777764 3568999999999998
Q ss_pred e-----cc---ccccCceeecCCC
Q 004316 441 F-----GV---DCASGDTFTDGSV 456 (761)
Q Consensus 441 ~-----gl---~~~~GdtL~~~~~ 456 (761)
. ++ ++..|++|++++.
T Consensus 286 ~l~~~~~~~~~d~~~G~vl~~~~~ 309 (403)
T 3sjy_A 286 GTYLDPSLTKADNLLGSIITLADA 309 (403)
T ss_dssp EESSCHHHHGGGTTTTCEEEETTC
T ss_pred EeccccccchhhhccccEEeCCCC
Confidence 3 44 6778999998654
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=3.6e-32 Score=305.95 Aligned_cols=252 Identities=27% Similarity=0.304 Sum_probs=195.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+.++|+++||+|||||||+++|+... +..+ ..+|+|++.....+.+++..++|||||||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--------v~~~-------------e~~GIT~~i~~~~v~~~~~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--------VASG-------------EAGGITQHIGAYHVETENGMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--------HSBT-------------TBCCCCCCSSCCCCCTTSSCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--------Cccc-------------cCCCeeEeEEEEEEEECCEEEEEEECCCc
Confidence 56789999999999999999997531 1111 12688888888788888999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeeec
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 230 (761)
.+|...+.++++.+|++|+|+|+++|+..||.++|..+...++|+|+++||+|+.++++++..++ +..
T Consensus 62 e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~----l~~-------- 129 (501)
T 1zo1_I 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE----LSQ-------- 129 (501)
T ss_dssp TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCC----CCC--------
T ss_pred HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHH----HHH--------
Confidence 99999999999999999999999999999999999999999999999999999976543211000 000
Q ss_pred CCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHH
Q 004316 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (761)
Q Consensus 231 i~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (761)
.....+
T Consensus 130 -------------------------------------------------------------------~~~~~~------- 135 (501)
T 1zo1_I 130 -------------------------------------------------------------------YGILPE------- 135 (501)
T ss_dssp -------------------------------------------------------------------CCCCTT-------
T ss_pred -------------------------------------------------------------------hhhhHH-------
Confidence 000000
Q ss_pred HHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccEE
Q 004316 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (761)
Q Consensus 311 ~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~ 389 (761)
..+..+|++++||++|.|+++|+++|......+. ...+++.|+.++|++.+.+++ |+++
T Consensus 136 ---~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~-----------------~~~~~~~~~~~~V~e~~~d~g~G~v~ 195 (501)
T 1zo1_I 136 ---EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE-----------------LKAVRKGMASGAVIESFLDKGRGPVA 195 (501)
T ss_dssp ---CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST-----------------TTSCCCSBCEEEEEEEEECSSSSEEE
T ss_pred ---HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc-----------------cccccccccccceEEEEEeCCcEEEE
Confidence 0112378999999999999999999976421110 013467889999999999987 9999
Q ss_pred EEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-c-cccCceeecC
Q 004316 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFTDG 454 (761)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~~~ 454 (761)
++||++|++++||.|.+.+. ..++..+.+....++++|.||+.+.+.|+ + ...||+++..
T Consensus 196 ~~~V~~Gtlk~Gd~v~~g~~-----~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~ 257 (501)
T 1zo1_I 196 TVLVREGTLHKGDIVLCGFE-----YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVV 257 (501)
T ss_dssp EEEEEESBCCTTCEEEEEBS-----SCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEE
T ss_pred EEEEEeeEEecCCEEEEccc-----eeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEec
Confidence 99999999999999987542 23444454555567999999999999998 4 4789998743
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.96 E-value=4e-31 Score=299.82 Aligned_cols=254 Identities=24% Similarity=0.279 Sum_probs=197.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (761)
+.+.|+++||+|||||||+++|....-. ....+|+|.+.....+.+ ++..++||||||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~---------------------~~~~~giT~~i~~~~v~~~~g~~i~~iDTPG 61 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA---------------------AMEAGGITQHIGAFLVSLPSGEKITFLDTPG 61 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH---------------------HSSSCCBCCCTTSCCBCSSCSSCCBCEECSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc---------------------cccCCceeEEEeEEEEEeCCCCEEEEEECCC
Confidence 3457999999999999999999753211 112257777777666666 567899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCChHHHHHHHHHHhCCceeeeee
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 229 (761)
|.+|...+.++++.+|++|+|+|+++|+..||.++|..+...++|+++|+||+|+..+++.+..+++... +..
T Consensus 62 he~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~------ 134 (537)
T 3izy_P 62 HAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DVV------ 134 (537)
T ss_dssp SCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TSC------
T ss_pred hHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hhh------
Confidence 9999999999999999999999999999999999999999999999999999999765432221111110 000
Q ss_pred cCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHH
Q 004316 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (761)
Q Consensus 230 pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (761)
.+
T Consensus 135 -----------------------------------------------------------------~e------------- 136 (537)
T 3izy_P 135 -----------------------------------------------------------------CE------------- 136 (537)
T ss_dssp -----------------------------------------------------------------CC-------------
T ss_pred -----------------------------------------------------------------HH-------------
Confidence 00
Q ss_pred HHHHhcCcceeEeecccCCCcchHHHHHHHHhhCCCCcccccccccccCccceeeccCCCCCCcEEEEEeeeeccC-ccE
Q 004316 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQL 388 (761)
Q Consensus 310 ~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l 388 (761)
..+..+|++++||++|.|+++|++++...++.+.. ..+++.|+.+.|++.+.+++ |++
T Consensus 137 ----~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~-----------------~~~~~~~~~~~V~e~~~~~g~G~V 195 (537)
T 3izy_P 137 ----DYGGDVQAVHVSALTGENMMALAEATIALAEMLEL-----------------KADPTGAVEGTVIESFTDKGRGPV 195 (537)
T ss_dssp ----CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC-----------------CCCSSSSEEEEEEEECCCTTCCCC
T ss_pred ----hcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc-----------------cCCCCCCcceeEEEEEEeCCCceE
Confidence 01124689999999999999999999987664321 13567899999999999997 999
Q ss_pred EEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEEecc-c-cccCceeecCCC
Q 004316 389 TYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV-D-CASGDTFTDGSV 456 (761)
Q Consensus 389 ~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~GdtL~~~~~ 456 (761)
+.++|.+|+|++||.|... ....+|..|+.. ...++++|.||++|+|.|+ + ...||+|+...+
T Consensus 196 ~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~---~g~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 196 TTAIIQRGTLRKGSILVAG--KSWAKVRLMFDE---NGRAVNEAYPSMPVGIIGWRDLPSAGDEILEVES 260 (537)
T ss_dssp EEEEEEEECCSSEEEECCS--SCCEEEEEEEEC---CCCCSCCSCCSTTCCCCSSEEEEEEESSCCSCCS
T ss_pred EEEEEecCEEEcCCEEEeC--CceEEEEEEEcC---CCCCCcEEcCCCEEEEECCCCCCCCCCEEEecCC
Confidence 9999999999999998542 233566666543 3367999999999999999 5 488999987654
No 33
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1.1e-20 Score=211.70 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=111.2
Q ss_pred ccccccccccccccccccccccc-CCCCcch-hhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccc
Q 004316 36 LLQGNFHLQSRQFSAGGNLARAK-DDKEPWW-KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (761)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (761)
++..++.+|+.|+.+..++.+.. ..++... ....+..++|+++|++|+|||||+|+|+.....+
T Consensus 137 g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~-------------- 202 (436)
T 2hjg_A 137 GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-------------- 202 (436)
T ss_dssp SSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE--------------
T ss_pred CCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCcee--------------
Confidence 45578889999999988887765 2222111 1122457899999999999999999997532211
Q ss_pred cccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC----------cHHH-HHHHHHhcCeEEEEEeCCCCcchhHH
Q 004316 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD----------FTVE-VERALRVLDGAILVLCSVGGVQSQSI 182 (761)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~----------f~~~-~~~al~~aD~ailVvDa~~g~~~qt~ 182 (761)
.+...|+|.+.....+.+++..++||||||+.+ |... ...+++.+|++|+|+|++++...|+.
T Consensus 203 ------~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~ 276 (436)
T 2hjg_A 203 ------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 (436)
T ss_dssp ------EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred ------ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH
Confidence 011267888888888899999999999999843 3332 34688999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 183 TVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 183 ~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.++..+...++|+++|+||+|+..
T Consensus 277 ~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 277 RIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHcCCcEEEEEECccCCC
Confidence 998888889999999999999864
No 34
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=6.2e-20 Score=206.90 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=113.7
Q ss_pred ccccccccccccccccccccccc-CCCCcch-hhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccc
Q 004316 36 LLQGNFHLQSRQFSAGGNLARAK-DDKEPWW-KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA 113 (761)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~ 113 (761)
++..++.+|+.++.+..++.+.. ..++... ....+...+|+++|++|+|||||+++|+.....+ +.
T Consensus 157 g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~-----~~------- 224 (456)
T 4dcu_A 157 GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-----VS------- 224 (456)
T ss_dssp SSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE-----EC-------
T ss_pred CCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccc-----cC-------
Confidence 45677888999998888777655 2221111 1223467899999999999999999997432211 11
Q ss_pred cccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC----------CCCcHHHH-HHHHHhcCeEEEEEeCCCCcchhHH
Q 004316 114 KMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG----------HVDFTVEV-ERALRVLDGAILVLCSVGGVQSQSI 182 (761)
Q Consensus 114 ~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG----------~~~f~~~~-~~al~~aD~ailVvDa~~g~~~qt~ 182 (761)
...|+|.+.....+.+++..++|||||| +..|.... ..+++.+|++|+|+|++++...++.
T Consensus 225 --------~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~ 296 (456)
T 4dcu_A 225 --------NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 296 (456)
T ss_dssp --------C------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred --------CCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHH
Confidence 1257788888888889999999999999 45565543 4588999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 183 TVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 183 ~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.++.++...++|+++|+||+|+..
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHcCCCEEEEEEChhcCC
Confidence 999999999999999999999864
No 35
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=3e-19 Score=189.90 Aligned_cols=116 Identities=24% Similarity=0.185 Sum_probs=92.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+|+|++|+|||||+|+|+.....+. ... .++|.......+.+++.+++||||||+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-----s~~---------------~~tTr~~i~~i~~~~~~~l~l~DTpG~ 65 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-----SPR---------------PQTTRKRLRGILTEGRRQIVFVDTPGL 65 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC-----CSS---------------SCCCCSCEEEEEEETTEEEEEEECCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee-----cCC---------------CCceeEEEEEEEEeCCcEEEEecCccc
Confidence 456899999999999999999985433221 111 234444444456678899999999999
Q ss_pred CC--------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCCCC
Q 004316 151 VD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~--------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~iiviNK~D~~~ 206 (761)
.+ |...+..+++.+|++|+|+|++++....+..+++.+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 87 677788899999999999999999888888888888877 899999999999864
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=5.9e-19 Score=188.52 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=93.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-CeEEEEEeCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGH 150 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~ 150 (761)
.-.|+|+|++|+|||||+|+|+...-.+ +. ...++|.......+.++ +.+++||||||+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i-----~s---------------~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSI-----IS---------------PKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSC-----CC---------------SSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc-----cC---------------CCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 4469999999999999999997533221 01 11456776666777788 899999999999
Q ss_pred CCcH----------HHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHHHcCCCEEEEEeCCCCC
Q 004316 151 VDFT----------VEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~----------~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~~~~~p~iiviNK~D~~ 205 (761)
.++. ..+..+++.+|++|+|+|++++...++..+ +..+...++|+++|+||+|+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 7654 667888999999999999999999999988 677777899999999999985
No 37
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=5.1e-19 Score=172.24 Aligned_cols=119 Identities=34% Similarity=0.458 Sum_probs=95.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++.++|+++|.+|+|||||+++|+...-.. . ...++|.......+.+++..+.||||||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 64 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--------Q-------------EAGGITQHIGAYQVTVNDKKITFLDTPG 64 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--------S-------------SCCSSSTTCCCCEEEETTEEEEESCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--------C-------------CCCceeEeeeEEEEEeCCceEEEEECCC
Confidence 356789999999999999999996421110 0 0123444444455677888999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCCh
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 209 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~~ 209 (761)
+.+|...+..+++.+|++|+|+|++++...++...+..+...++|+++|+||+|+...+.
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 65 HEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp SSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH
T ss_pred CHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH
Confidence 999988777888899999999999998888888888888888999999999999976543
No 38
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=2.6e-18 Score=164.20 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=87.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+++|+++|++|+|||||+++|+...... .+...++|.......+.+.+..+.||||||+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV--------------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-------------------------------CCEEEEEEETTEEEEEEECGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee--------------------ccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 4789999999999999999997532110 01123555555666677788899999999998
Q ss_pred C-------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 152 D-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~-------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+ +...+...++.+|++|+|+|+..+.......+...+...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 61 SGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp SSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred CccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 7 45566778899999999999999887777777788877899999999999985
No 39
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1.6e-18 Score=175.71 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=88.7
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-ecCeEEEEEeC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDT 147 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDT 147 (761)
..+.++|+++|++|+|||||+++|+...... .. ....|+|.......+. +++..++||||
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~-------------~~------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 86 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLA-------------FA------SKTPGRTQHINYFSVGPAAEPVAHLVDL 86 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSS-------------CT------TCCCCSCCCEEEEEESCTTSCSEEEEEC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcce-------------ee------cCCCCcccceEEEEecCCCCCcEEEEcC
Confidence 3467899999999999999999996432100 00 0113556555554554 56789999999
Q ss_pred CCCCC----------cHHHHHHHHHh---cCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 148 PGHVD----------FTVEVERALRV---LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~----------f~~~~~~al~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
||+.+ |...+..+++. +|++|+|+|+.++.......++..+...++|+++|+||+|+..
T Consensus 87 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 87 PGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 99743 34444455555 8889999999999888888888888889999999999999853
No 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=4.4e-19 Score=196.30 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=91.4
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCe-EEEEEe
Q 004316 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIID 146 (761)
Q Consensus 68 ~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liD 146 (761)
+....++|+|+|++|+|||||+++|+.... ...+..+|+|++.....+.+.+. .++|||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~--------------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liD 89 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV--------------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC---------------------------------CCCCEEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC--------------------CccCCCCCeeeeeEEEEEEECCCCeEEEEE
Confidence 345788999999999999999999953221 11223468888888888888765 999999
Q ss_pred CCCCCCcHH-------HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC
Q 004316 147 TPGHVDFTV-------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (761)
Q Consensus 147 TPG~~~f~~-------~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~ 208 (761)
||||.+|.. .+..+++.+|++|+|+|+ +...++...+..+...++|+++|+||+|+...+
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 999988743 356788899999999999 778899999999999999999999999997554
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=1.9e-18 Score=183.88 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=87.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+|+||+|+|||||+|+|+.....+ +.+. .++|.......+.+++.+++++||||+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i-----~s~~---------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISI-----TSRK---------------AQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEE-----CCCC---------------SSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc-----cCCC---------------CCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4589999999999999999997542111 1111 2344444445567888999999999997
Q ss_pred -Cc--------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 152 -DF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 -~f--------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+ ...+..+++.+|++++|+|+.. +..++..+++.+...++|+++|+||+|+..
T Consensus 68 ~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 68 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred ccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 32 2233556788999999999988 888999898888888999999999999864
No 42
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=2.1e-18 Score=193.40 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=105.7
Q ss_pred ccccccccccccccccccccccC-CCCcch-h--h--ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc
Q 004316 37 LQGNFHLQSRQFSAGGNLARAKD-DKEPWW-K--E--SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG 110 (761)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~--~~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~ 110 (761)
+..++.+|+.|+.+..++.+... .++... . . ..+...+|+|+|++|+|||||+++|+.....+ +.+
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~-----v~~--- 210 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERAL-----VSP--- 210 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE-----ECC---
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccc-----cCC---
Confidence 44678889999998888776551 111100 0 1 12346799999999999999999997432211 111
Q ss_pred ccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCcHH------------HHHHHHHhcCeEEEEEeCCCCcc
Q 004316 111 VGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV------------EVERALRVLDGAILVLCSVGGVQ 178 (761)
Q Consensus 111 ~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~------------~~~~al~~aD~ailVvDa~~g~~ 178 (761)
..|+|.+.....+.+++..+.+|||||+..+.. ....+++.+|++++|+|+..+..
T Consensus 211 ------------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~ 278 (439)
T 1mky_A 211 ------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT 278 (439)
T ss_dssp ------------CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC
T ss_pred ------------CCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC
Confidence 156777777788889999999999999854332 23567899999999999999988
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 179 SQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 179 ~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+...++..+...++|+++|+||+|+..
T Consensus 279 ~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 279 RQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred HHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 8888888888889999999999999853
No 43
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=2.5e-19 Score=186.67 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=128.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+|+|++|+|||||+++|+.....+... . ..++|.......+.|+++.++||||||
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----~--------------~~~~t~~~~~~~~~~~~~~i~iiDTpG 80 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----G--------------SQTLTKTCSKSQGSWGNREIVIIDTPD 80 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----T--------------SCCCCCSCEEEEEEETTEEEEEEECCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----C--------------CCceeeeeEEEEEEeCCCEEEEEECcC
Confidence 356799999999999999999998644322110 0 123566666677889999999999999
Q ss_pred CCCcH-----------HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc-----CCCEEEEEe-CCCCCCCChHHH
Q 004316 150 HVDFT-----------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-----EVPRLAFIN-KLDRMGADPWKV 212 (761)
Q Consensus 150 ~~~f~-----------~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~iiviN-K~D~~~~~~~~~ 212 (761)
+.++. ..+..+++.+|++|+|+|++. +..++..+++.+... +.|+++++| |+|+.+.+....
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~ 159 (260)
T 2xtp_A 81 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDY 159 (260)
T ss_dssp GGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHH
Confidence 98763 223346678999999999985 777788888887765 678888888 999987655442
Q ss_pred --------HHHHHHHhCCceeee-eecC------CCcCccccceeccccee-EEeeCCCCCeEEecCCCh--hhHHHHHH
Q 004316 213 --------LDQARSKLRHHCAAV-QVPM------GLEDQFQGLVDLVQLTA-YYFHGSNGEKIVTGEVPA--DMETFVAE 274 (761)
Q Consensus 213 --------~~~i~~~l~~~~~~~-~~pi------~~~~~~~g~idl~~~~~-~~~~~~~g~~~~~~~i~~--~~~~~~~~ 274 (761)
+.++.+.++....+. .+|+ +...-|.++++++.... ++|+.+ ...++|. .......+
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 234 (260)
T 2xtp_A 160 MHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG-----LYSLIQRSKCGPVGSDE 234 (260)
T ss_dssp HHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH-----HHHHC------------
T ss_pred HHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH-----HHHHHHHHHhhhhhHHH
Confidence 223444444322111 1333 22333445566665544 555321 1223454 44556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcC
Q 004316 275 KRRELIELVSEVDDKLGDMFLSD 297 (761)
Q Consensus 275 ~~~~l~e~~~~~dd~l~e~~l~~ 297 (761)
.+..+.+.+++.+++++++|.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ 257 (260)
T 2xtp_A 235 RVKEFKQSLIKYMETQRSYTALA 257 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999754
No 44
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.75 E-value=3.9e-18 Score=168.65 Aligned_cols=128 Identities=22% Similarity=0.125 Sum_probs=83.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceE-EEeecCeEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT-SCAWKDYQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~-~~~~~~~~i~liDTP 148 (761)
+...+|+++|++|+|||||++.|......... . .........+...|.+...... .+......+.|||||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~-----~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRK-----G----EMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGB-----C----CCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccc-----c----cccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 34678999999999999999666422111000 0 0000000000111222222211 233445789999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH---------cCCCEEEEEeCCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR---------YEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~---------~~~p~iiviNK~D~~~ 206 (761)
|+.+|...+..+++.+|++|+|+|++++...++...+..+.. .++|+++|+||+|+..
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999999997766666555544433 5889999999999864
No 45
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.75 E-value=2.8e-17 Score=157.62 Aligned_cols=110 Identities=19% Similarity=0.142 Sum_probs=81.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|++|+|||||+++|+...-. +.. -|+......+.+++..+.||||||+.+|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-----------------~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 57 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-----------------TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKI 57 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-----------------CCC-------CCSSCCEEEEECSSCEEEEEECCCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-----------------ccc-------CcCceeEEEEEECCEEEEEEEcCCChhh
Confidence 6999999999999999999753210 000 0222233445667899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
...+..+++.+|++|+|+|+++........ .+..... .++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 998889999999999999998764433322 2333322 37899999999999643
No 46
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=2.1e-18 Score=179.12 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=86.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+++|+++|++|+|||||+|+|+... .. +.+ ..|+|+......+.+++..+.||||||+.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~---~~---v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~ 59 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN---QR---VGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVY 59 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS---EE---EEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CC---ccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCcc
Confidence 3689999999999999999995321 11 111 15788888888899999999999999998
Q ss_pred CcHH----------HHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 152 DFTV----------EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 152 ~f~~----------~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
+|.. ....++ +.+|++|+|+|++. ......++.++...++|+++|+||+|+
T Consensus 60 ~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl 122 (256)
T 3iby_A 60 SLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDI 122 (256)
T ss_dssp SCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHH
T ss_pred cccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhc
Confidence 8764 223444 78999999999987 355566777788889999999999996
No 47
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=8.6e-18 Score=166.74 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=84.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
....++|+|+|++|+|||||+++|+...-.. .++ .-|+......+.+.+..+.|||||
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~---------------~~~-------~~t~~~~~~~~~~~~~~~~i~Dt~ 71 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS---------------KHI-------TATVGYNVETFEKGRVAFTVFDMG 71 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-------------------CC-------CCCSSEEEEEEEETTEEEEEEEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc---------------ccc-------ccccceeEEEEEeCCEEEEEEECC
Confidence 3467899999999999999999995321100 000 012222333456788999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHHc-----------CCCEEEEEeCCCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRRY-----------EVPRLAFINKLDRMGA 207 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~-----------~~p~iiviNK~D~~~~ 207 (761)
|+.+|...+..+++.+|++|+|+|++++...... ..+..+... ++|+++|+||+|+...
T Consensus 72 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 72 GAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp CSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999998888889999999999999987544433 333444333 8999999999998643
No 48
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.74 E-value=2.1e-17 Score=163.58 Aligned_cols=116 Identities=12% Similarity=0.251 Sum_probs=83.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
..+..+|+++|++|+|||||+++|+...- ... + ....|.|...... .. +..+.|||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~---~---------------~~~~~~t~~~~~~--~~-~~~~~l~Dt~ 77 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKN-LAR---T---------------SSKPGKTQTLNFY--II-NDELHFVDVP 77 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------------CCEEEE--EE-TTTEEEEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCC-ccc---c---------------CCCCCceeeEEEE--EE-CCcEEEEECC
Confidence 34678999999999999999999974210 000 0 0113344433322 22 3479999999
Q ss_pred C----------CCCcHHHHHHHHHhc---CeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 149 G----------HVDFTVEVERALRVL---DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G----------~~~f~~~~~~al~~a---D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
| +..|...+...++.+ |++++|+|++++.......+++.+...++|+++|+||+|+..
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 78 GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9 455555566677777 999999999999888888888888889999999999999864
No 49
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=2.6e-17 Score=162.32 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=83.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-. .. ...|+......+.+++..+.||||||+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--------~~---------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN--------ED---------------MIPTVGFNMRKITKGNVTIKLWDIGGQ 77 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------CS---------------CCCCCSEEEEEEEETTEEEEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC--------Cc---------------cCCCCceeEEEEEeCCEEEEEEECCCC
Confidence 4568999999999999999999753211 00 011222223346678899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 99998889999999999999999876443332 22333322 58999999999999653
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.7e-17 Score=161.85 Aligned_cols=112 Identities=17% Similarity=0.073 Sum_probs=78.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-. . .. .|+......+.+++..+.||||||+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~---~~-------------------~t~~~~~~~~~~~~~~~~i~Dt~G~ 70 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H---TS-------------------PTIGSNVEEIVINNTRFLMWDIGGQ 70 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E---EE-------------------CCSCSSCEEEEETTEEEEEEECCC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c---Cc-------------------CCCccceEEEEECCEEEEEEECCCC
Confidence 4578999999999999999999742111 0 00 0222223345567899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~ 206 (761)
.+|...+..+++.+|++|+|+|++++...+.. ..+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp ---CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 99988888899999999999999887543333 23333332 5789999999999864
No 51
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=1.5e-17 Score=186.43 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=88.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++|+|+|++|+|||||+|+|+.....+ +. ...|+|.+.....+.|++..+.||||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~-----v~---------------~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI-----VE---------------DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-----ec---------------CCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 579999999999999999997432211 11 1268898888889999999999999999865
Q ss_pred ---------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 153 ---------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 153 ---------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
+...+..+++.||++|+|+|++.+.......+...+...++|+++|+||+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122 (439)
T ss_dssp SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 3455678899999999999999999888888888888889999999999997
No 52
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=1.1e-17 Score=161.41 Aligned_cols=113 Identities=20% Similarity=0.077 Sum_probs=82.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...- . .. ..|+......+.+++..+.+|||||+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~---------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~ 61 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V---------------TT-------IPTIGFNVETVTYKNLKFQVWDLGGL 61 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C---------------CC-------CCCSSEEEEEEEETTEEEEEEEECCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C---------------Cc-------CCcCccceEEEEECCEEEEEEECCCC
Confidence 457899999999999999999964211 0 00 11222233456677899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
.+|...+..+++.+|++|+|+|+++....... ..+..... .++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 99988888889999999999999886443332 22233322 58899999999998653
No 53
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=7e-17 Score=158.39 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=82.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++..+|+++|++|+|||||+++|+... ... +. ...|.+ ...+.+++..+.+|||||
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~---~~---------------~t~g~~----~~~~~~~~~~l~i~Dt~G 69 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--ISH---IT---------------PTQGFN----IKSVQSQGFKLNVWDIGG 69 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CEE---EE---------------EETTEE----EEEEEETTEEEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CCc---cc---------------CcCCeE----EEEEEECCEEEEEEECCC
Confidence 356789999999999999999995321 100 00 012322 234556789999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~----~~~~p~iiviNK~D~~~~ 207 (761)
+.+|...+..+++.+|++|+|+|+++........ .+.... ..++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999999999999999999999998764433322 222222 257899999999999654
No 54
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=6.5e-18 Score=177.39 Aligned_cols=109 Identities=23% Similarity=0.295 Sum_probs=85.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+|+|+... .. +. ...|+|+......+.+.+..+.||||||+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~---~~---v~---------------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~ 62 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR---QR---VG---------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---EE---EE---------------ECTTSSSEEEEEEEECSSCEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---cc---cC---------------CCCCeeEEEEEEEEEeCCCceEEEECcCCCc
Confidence 589999999999999999996432 11 11 1157888888888888899999999999988
Q ss_pred cHH---------HH-HH--HHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 153 FTV---------EV-ER--ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 153 f~~---------~~-~~--al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
|.. .+ .. ..+.+|++|+|+|++. .........++...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp SCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred cccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 762 11 12 2368999999999987 345566677788889999999999997
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.73 E-value=5.5e-17 Score=160.64 Aligned_cols=115 Identities=20% Similarity=0.129 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+++|+.|+|||||+++|+...-. .+....++.+.....+.+++ ..+.||||
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt 82 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC---------------------EACKSTVGVDFKIKTVELRGKKIRLQIWDT 82 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-----------------------------CCTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC---------------------cCCCCccceeEEEEEEEECCeEEEEEEEeC
Confidence 45678999999999999999999532110 00111222222333344444 68999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|++++...+....|. .+.. .++|+++|+||+|+.
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999999999999999999876555544342 2332 378999999999974
No 56
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=163.19 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|+.|+|||||+++|+........ ...|+......+.+++..+.||||||+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN----------------------ILPTIGFSIEKFKSSSLSFTVFDMSGQ 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS----------------------CCCCSSEEEEEEECSSCEEEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------------cCCccceeEEEEEECCEEEEEEECCCC
Confidence 4568999999999999999999533210100 112333334456677899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH------cCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR------YEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~------~~~p~iiviNK~D~~~ 206 (761)
.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 99998888899999999999999876433332 23333332 4789999999999864
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.73 E-value=5.5e-17 Score=157.75 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=80.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC---eEEEEEeC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQINIIDT 147 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDT 147 (761)
+..+|+++|++|+|||||+++|+...- ..+....++.+.....+.+.+ ..+.||||
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt 63 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF---------------------GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT---------------------THHHHHTTTSSEEEEEEEETTTEEEEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC---------------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEEC
Confidence 456899999999999999999964211 011112222333334445544 78999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH-----cCCC-EEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR-----YEVP-RLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~-----~~~p-~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .+.| +++|+||+|+.
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 99999998889999999999999999886544433333 22322 2677 68999999984
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.7e-17 Score=162.78 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=85.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++..+|+++|++|+|||||+++|+...-. .. . ....|.+.......+......+.||||||
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------~~-----~------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD--------HN-----I------SPTIGASFMTKTVPCGNELHKFLIWDTAG 81 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC--------TT-----C------CCCSSEEEEEEEEECSSSEEEEEEEEECC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC--------CC-----c------CCCcceeEEEEEEEeCCEEEEEEEEcCCC
Confidence 45678999999999999999999753210 00 0 01134555554445555668999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|...+...++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred chhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999899999999999999999887554444333 33333 278999999999984
No 59
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.73 E-value=5.8e-17 Score=160.62 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+++|++|+|||||+++|+... .. .. ..|+......+.+++..+.||||||
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~---------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G 82 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IV---------------TT-------IPTIGFNVETVEYKNICFTVWDVGG 82 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CE---------------EE-------EEETTEEEEEEEETTEEEEEEECC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--cc---------------cc-------CCcCceeEEEEEECCEEEEEEECCC
Confidence 345689999999999999999994211 10 00 0122233345667889999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
+.+|...+..+++.+|++|+|+|+++....+... .+..... .++|+++|+||+|+...
T Consensus 83 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 83 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp ----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999888888999999999999998764433332 2233322 37899999999999643
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=3.4e-17 Score=157.51 Aligned_cols=116 Identities=16% Similarity=0.046 Sum_probs=82.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-. .. .+...|.+.......+...+..+.+|||||+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFH--------EF-----------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------TT-----------CCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC--------CC-----------CCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 3468999999999999999999752110 00 0011344444444444445678999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 99999899999999999999999876544443333 33333 367889999999974
No 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=4.8e-17 Score=158.62 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|++|+|||||+++|+...-.. . .....|.+.......+......+.||||||+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE--------F-----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT--------T-----------SCCCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC--------c-----------CCCCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 45689999999999999999997432110 0 0001122232222223333468999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHHc---CCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRRY---EVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~~---~~p~iiviNK~D~~ 205 (761)
.+|...+...++.+|++|+|+|+++....+... .+..+... ++|+++|+||+|+.
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 999988899999999999999998765544333 33344433 78899999999985
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.72 E-value=5.2e-17 Score=157.82 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=83.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++..+|+++|++|+|||||+++|+....... + ....|.+.......+......+.||||||
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD----------------C---PHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------C---TTSCCCCEEEEEEEETTEEEEEEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------C---CCccceEEEEEEEEECCeEEEEEEEECCC
Confidence 4568999999999999999999975321100 0 00123333333333333457899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++|+|+|++++...+....|. .+.. .++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp GGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999999999999875444443332 2222 578999999999984
No 63
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=6.4e-17 Score=159.63 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=83.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
...++|+++|+.|+|||||+++|+...... ... ..|.|..... ...+..+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~---------------~~~~t~~~~~---~~~~~~~~i~Dt~G 77 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-----VSK---------------TPGKTRSINF---YLVNSKYYFVDLPG 77 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-----CCS---------------SCCCCCCEEE---EEETTTEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-----ccC---------------CCCCccCeEE---EEECCcEEEEECCC
Confidence 456789999999999999999997533110 000 1233333222 22345789999999
Q ss_pred ----------CCCcHHHHHHHHHhc---CeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 150 ----------HVDFTVEVERALRVL---DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ----------~~~f~~~~~~al~~a---D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+..|...+...++.+ |++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 78 YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 344555555556555 999999999998888888888888889999999999999863
No 64
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=162.06 Aligned_cols=116 Identities=19% Similarity=0.132 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+++|++|+|||||+++|+...-.. +...+++.......+.+++ +.+.||||
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 72 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE---------------------SYISTIGVDFKIRTIELDGKTIKLQIWDT 72 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS---------------------CCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC---------------------CCCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 457899999999999999999997432110 0112334444444455555 68999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (761)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 73 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp CCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99999999999999999999999999986543333333 23333 2789999999999853
No 65
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=161.68 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=80.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.++..+|+++|++|+|||||+++|+...-.. . .....|.+.......+......+.|||||
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------~-----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 85 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--------N-----------ISATLGVDFQMKTLIVDGERTVLQLWDTA 85 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------------------CEEEEEEETTEEEEEEEEECT
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--------c-----------CCCCccceeEEEEEEECCEEEEEEEEECC
Confidence 3457899999999999999999997532100 0 00112334433333444445789999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH---cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~~p~iiviNK~D~~ 205 (761)
|+.+|...+..+++.+|++|+|+|++++...+....|. .+.. .++|+++|+||+|+.
T Consensus 86 G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999999999999999999999998875554444332 2222 378999999999973
No 66
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=3.3e-17 Score=160.47 Aligned_cols=112 Identities=17% Similarity=0.068 Sum_probs=81.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...- .. .. .|+......+.+++..+.||||||+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---~~-------------------~t~~~~~~~~~~~~~~~~i~Dt~G~ 75 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VH---TS-------------------PTIGSNVEEIVINNTRFLMWDIGGQ 75 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EE---EE-------------------CCSSSSCEEEEETTEEEEEEEESSS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--Cc---cC-------------------CcCceeeEEEEECCEEEEEEECCCC
Confidence 456899999999999999999974321 11 00 0111122345567899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHH----HcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
.+|...+..+++.+|++|+|+|+++....+.. ..+.... ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 99988888889999999999999987544433 2333333 25789999999999864
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=160.53 Aligned_cols=116 Identities=19% Similarity=0.126 Sum_probs=84.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEe
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (761)
.+...+|+++|++|+|||||+++|+...- ..+...+++.......+.+++ ..+.|||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF---------------------SGSYITTIGVDFKIRTVEINGEKVKLQIWD 64 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC------------------------CCTTTBSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCC---------------------CCccCCCceeEEEEEEEEECCEEEEEEEEc
Confidence 35678999999999999999999952110 011123445455455556666 7899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH--cCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~--~~~p~iiviNK~D~~ 205 (761)
|||+.+|...+..+++.+|++|+|+|++++...+....|. .+.. .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 9999999888888899999999999999865554443332 2222 258999999999974
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=8.9e-17 Score=160.50 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=80.7
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEe
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (761)
.+...+|+++|++|+|||||+++|+...- .. +....++.+.....+.+++ ..+.|||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~--------~~-------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D 84 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAF--------SE-------------RQGSTIGVDFTMKTLEIQGKRVKLQIWD 84 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CEEEEEEEETTEEEEEEEEC
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCC--------CC-------------CCCCCcceEEEEEEEEECCEEEEEEEEE
Confidence 35578999999999999999999964210 00 0011122222233344454 6899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 999999999999999999999999999876443333323 33333 468999999999984
No 69
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=5.1e-17 Score=162.00 Aligned_cols=118 Identities=19% Similarity=0.065 Sum_probs=84.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+++|++|+|||||+++|+...-.. . + ....|++.......+......+.||||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------~--------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 66 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP--------A--------F---VSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS--------C--------C---CCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------c---CCccceeEEEEEEEECCeEEEEEEEECCC
Confidence 346789999999999999999996422100 0 0 00123444433333444457899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (761)
+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp SGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred chhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999999999999999999999999886544443333 33333 3789999999999853
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=8.7e-17 Score=156.21 Aligned_cols=113 Identities=18% Similarity=0.136 Sum_probs=79.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
-.+|+++|++|+|||||+++|+...-.. . ....++.+.....+.+++ ..+.||||||
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G 72 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN--------T-------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS--------S-------------CCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--------C-------------CCCceeeEEEEEEEEECCeEEEEEEEECCC
Confidence 4689999999999999999997432110 0 012223333333344444 6899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHH---HcCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~---~~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++|+|+|++.....+....| ..+. ..++|+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp SGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 999998889999999999999999875433332222 2222 2478999999999974
No 71
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=3.9e-17 Score=171.21 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=88.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
++++|+++|++|+|||||+++|+.. ....+ ...|+|+......+.+++..++||||||+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~---~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 60 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL---RQHVG------------------NWPGVTVEKKEGIMEYREKEFLVVDLPGI 60 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT---CEEEE------------------ECTTSSCEEEEEEEEETTEEEEEEECCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC---CcccC------------------CCCCeEEEeeEEEEEECCceEEEEeCCCc
Confidence 3679999999999999999999532 11111 12577888888889999999999999999
Q ss_pred CCcHH------HHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcC-CCEEEEEeCCCC
Q 004316 151 VDFTV------EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDR 204 (761)
Q Consensus 151 ~~f~~------~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~-~p~iiviNK~D~ 204 (761)
.+|.. .....+ ..+|++|+|+|++.+ .+....+.++...+ +|+++|+||+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 61 YSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDL 121 (271)
T ss_dssp SCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHH
T ss_pred cccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhc
Confidence 88765 233333 569999999999885 46667777888888 999999999996
No 72
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=2.7e-17 Score=160.95 Aligned_cols=116 Identities=19% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+++|++|+|||||+++|+...- ..+...+++.+.....+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF---------------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64 (183)
T ss_dssp SEEEEEEEECCCCC-------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC---------------------CCCCCCcccceeEEEEEEECCEEEEEEEEcC
Confidence 4567999999999999999999963210 001112334333334445555 78999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (761)
||+.+|...+...++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99999988888889999999999999886543333323 33333 3789999999999853
No 73
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=8e-17 Score=154.93 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|+...-.. . . ....|.+.......+......+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~--------~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE--------N--------K---EPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT--------T--------C---CCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------C---CCccceeEEEEEEEECCEEEEEEEEECCCChh
Confidence 479999999999999999997532110 0 0 00123333333333333446899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 999999999999999999999986544444333 22222 378999999999984
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=2.6e-17 Score=162.30 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=83.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+++|++|+|||||+++|+...-.. . + ....|++.......+..+...+.||||||
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 80 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP--------A--------F---VSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--------S--------C---CCCCCCEEEEEEEEETTEEEEEEEEECCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC--------C--------c---CCceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 456799999999999999999997532110 0 0 00124444444444444567899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++|+|+|+++....+.... +..+.. .++|+++|+||+|+.
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99998888889999999999999987644433333 334444 378999999999984
No 75
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4.1e-17 Score=161.24 Aligned_cols=118 Identities=18% Similarity=0.086 Sum_probs=86.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.+...+|+|+|++|+|||||+++|+...-..... ...|++.......+...+..+.|||||
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 80 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV-------------------STVGIDFKVKTVYRHEKRVKLQIWDTA 80 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE-------------------EEETTTEEEEEEEETTTTEEEEEECHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC-------------------CCeeeEEEEEEEEECCEEEEEEEEeCC
Confidence 3457789999999999999999997543111000 012344444455555667899999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 81 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999875443333333 33333 478999999999984
No 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.71 E-value=3.8e-17 Score=160.50 Aligned_cols=114 Identities=21% Similarity=0.185 Sum_probs=82.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++..+|+++|++|+|||||+++|+... .. ++ ..|+......+.+++..+.+|||||
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~---------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G 71 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD---------------TI-------SPTLGFNIKTLEHRGFKLNIWDVGG 71 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS---------------SC-------CCCSSEEEEEEEETTEEEEEEEECC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC---------------cc-------cccCccceEEEEECCEEEEEEECCC
Confidence 356789999999999999999996422 10 00 0122222334556789999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
+.+|...+..+++.+|++|+|+|+++....+.. ..+..... .++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 72 QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp SHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 999888888889999999999999886544432 23333332 47899999999998653
No 77
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.70 E-value=7.6e-17 Score=155.58 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=77.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|+...... ....|+|+......+.+++..+.+|||||+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYI---------------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSC---------------------C-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeec---------------------cCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 579999999999999999996321000 01135666666666777889999999999988
Q ss_pred cH------HHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 153 FT------VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 153 f~------~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
|. .....+++ .+|++++|+|++.. .+....+..+...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 63 LTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDL 120 (165)
T ss_dssp SSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHH
T ss_pred CCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHh
Confidence 74 22344444 79999999999862 23334455566679999999999996
No 78
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=158.96 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=84.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
.++..+|+|+|++|+|||||+++|+........ ....|.+.......+...+..+.|||||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS-------------------RTTIGVEFSTRTVMLGTAAVKAQIWDTA 82 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC-------------------CCCSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-------------------CCccceeEEEEEEEECCEEEEEEEEeCC
Confidence 456789999999999999999999753211100 0012333433333444456789999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|+.+|...+..+++.+|++|+|+|++..........| ..+.. .++|+++|+||+|+.
T Consensus 83 G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp CCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 9999998889999999999999999876543333333 33332 378999999999984
No 79
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=8.4e-17 Score=158.45 Aligned_cols=116 Identities=15% Similarity=0.009 Sum_probs=80.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec-----------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (761)
+...+|+++|++|+|||||+++|+...-... .. . ..|.+... ...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------~~---~----------t~~~~~~~-~~~~~~~~~~~~~~~~~~ 68 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK------FI---T----------TVGIDFRE-KRVVYRANGPDGAVGRGQ 68 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS------CC---C----------CCSEEEEE-EEEEECTTSCCCSSCCCE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC------cc---c----------ccceeeee-EEEEEecCCcccccccCc
Confidence 4567999999999999999999975321000 00 0 01111110 1112222
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
...+.||||||+.+|...+..+++.+|++|+|+|++.....+....| ..+.. .++|+++|+||+|+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 46899999999999999999999999999999999886554443333 33332 588999999999984
No 80
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.70 E-value=2.8e-17 Score=170.94 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=85.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+... ... . ...|+|+......+.+++..+.||||||+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~---~~~---~---------------~~pg~tv~~~~~~~~~~~~~~~l~DtpG~ 62 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK---QYV---A---------------NWPGVTVEKKEGVFTYKGYTINLIDLPGT 62 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC---EEE---E---------------ECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---Ccc---c---------------CCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 34689999999999999999995321 111 0 11578888888888888999999999999
Q ss_pred CCcHH------HHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 151 VDFTV------EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 151 ~~f~~------~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
.+|.. .....+ ..+|++|+|+|++.. ......+.++...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 63 YSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp SSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 88753 123334 479999999999874 34455667778889999999999996
No 81
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=3.9e-17 Score=157.24 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=82.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+...-.. . .....|.+.......+......+.||||||+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDP--------N-----------INPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT--------T-----------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC--------C-----------CCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 4689999999999999999997532100 0 00113444444444444445789999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred hhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 9998889999999999999999887554544333 33433 367789999999984
No 82
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=4.5e-16 Score=149.19 Aligned_cols=114 Identities=21% Similarity=0.165 Sum_probs=74.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+...-.. . +.+ ..+.+. .....+......+.||||||+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE--------D--------YEP---TKADSY-RKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS--------C--------CCT---TCCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC--------C--------CCC---CcceEE-EEEEEECCEEEEEEEEECCCcc
Confidence 4689999999999999999997532100 0 000 011111 1111222233689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
+|...+..+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp -CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 9999999999999999999999875443333222 22222 379999999999974
No 83
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=2.5e-16 Score=154.52 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=74.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
..+|+++|++|+|||||+++|+...-.. . + .+.+.......+.+++ ..+.||||||
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-------~---------~------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD-------E---------Y------DPTIEDSYRKQVVIDGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC-------C---------C------CTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC-------C---------C------CCCchheEEEEEEECCcEEEEEEEECCC
Confidence 3579999999999999999997532110 0 0 0111111112223333 5688899999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 999999999999999999999999876444433333 22222 478999999999985
No 84
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=155.87 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=74.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+++|++|+|||||+++|+...-.... ...+++.......+..++ ..+.||||
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~~~Dt 67 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT--------------------FISTVGIDFRNKVLDVDGVKVKLQMWDT 67 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC--------------------CCCCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC--------------------cCCceeeEEEEEEEEECCEEEEEEEEeC
Confidence 34578999999999999999999753221100 001222222222333343 58999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (761)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999998888899999999999999886544433322 33333 5789999999999853
No 85
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.70 E-value=8.2e-17 Score=157.82 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=82.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
++..+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.||||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 66 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD---------------------SNHTIGVEFGSKIINVGGKYVKLQIWDT 66 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT---------------------CCCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC---------------------CCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 4567999999999999999999975321110 011223333333344444 68999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HH---HHcCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QM---RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~---~~~~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|+++....+....|. .+ ...++|+++|+||+|+.
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999999999999999998865544443332 22 23578999999999984
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=1.6e-16 Score=157.22 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=81.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+...- .. ...|+......+.+++..+.+|||||+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~--~~----------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL--AT----------------------LQPTWHPTSEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC--CC----------------------CCCCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--Cc----------------------cccCCCCCeEEEEECCEEEEEEECCCCH
Confidence 45899999999999999999974221 00 0112222345566788999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
+|...+..+++.+|++|+|+|++++...+.... +.... ..++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 988777788899999999999998754443332 23332 25799999999999975
No 87
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=1.1e-16 Score=155.57 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=80.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
...+|+++|++|+|||||+++|+...-.. +....++.......+.+++ ..+.|||||
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 64 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT---------------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-------------------------CCSEEEEEEEEEETTEEEEEEEEECC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCceeeeEEEEEEEECCEEEEEEEEeCC
Confidence 45789999999999999999997432100 0112222232233344444 689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH-------cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR-------YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~-------~~~p~iiviNK~D~~ 205 (761)
|+.+|...+...++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp CCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999998889999999999999999865444333332 2221 578999999999985
No 88
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.70 E-value=7.7e-17 Score=155.19 Aligned_cols=114 Identities=20% Similarity=0.100 Sum_probs=78.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
...+|+++|++|+|||||+++|+...-.. +...+++.......+.+++ ..+.|||||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 60 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP---------------------SFITTIGIDFKIKTVDINGKKVKLQIWDTA 60 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC----------------------------CCEEEEEEESSSCEEEEEEECCT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEeCC
Confidence 35689999999999999999997432100 0012222222233344443 689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 61 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp TGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 9999988888899999999999999876443333333 33333 378999999999983
No 89
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.70 E-value=9.7e-17 Score=156.13 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=81.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|+...... +. + ..|+|.+.....+.+++..+.+|||||+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~-----~~---------~------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI-----VT---------D------IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC-----CC---------S------STTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce-----ee---------C------CCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 479999999999999999996432111 00 0 135555555566777888899999999976
Q ss_pred cHH--------HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc---CCCEEEEEeCCCCC
Q 004316 153 FTV--------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY---EVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~--------~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~~p~iiviNK~D~~ 205 (761)
+.. ....+++.+|++|+|+|++..........+..+... ++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 65 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 421 123468899999999999887665555555555443 68999999999973
No 90
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=1.5e-17 Score=186.38 Aligned_cols=113 Identities=27% Similarity=0.357 Sum_probs=84.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC-
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 151 (761)
++|+|+|++|+|||||+|+|+...-.+ + +...|+|.+.....+.|++..+.||||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~--------------v------~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI--------------V------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------------------------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--------------e------cCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 579999999999999999995321110 1 1236888888888889999999999999996
Q ss_pred -------CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 152 -------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 152 -------~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.|...+..+++.+|++|+|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 64 GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp ---CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 566777889999999999999999999988888888888899999999999985
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.70 E-value=1.2e-16 Score=159.25 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|.... . ..+ ..|+......+.+++..+.+|||||+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~--~---------------~~~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~ 79 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR--L---------------GQH-------VPTLHPTSEELTIAGMTFTTFDLGGH 79 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSCEEEEETTEEEEEEEECC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC--C---------------Ccc-------CCCCCceeEEEEECCEEEEEEECCCc
Confidence 34579999999999999999994210 0 000 11222233456678899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHH----HcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~----~~~~p~iiviNK~D~~~ 206 (761)
.+|...+..+++.+|++|+|+|+++....+.... +.... ..++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 80 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp ---CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 9988877888999999999999988654333322 22232 25799999999999965
No 92
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=160.00 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=81.7
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEe
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIID 146 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 146 (761)
.+...+|+++|++|+|||||+++|+...- ... ....++.+.....+.+++ ..+.|||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~D 81 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLF--------PPG-------------QGATIGVDFMIKTVEINGEKVKLQIWD 81 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSC--------CTT-------------CCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCC--------CCC-------------CCCccceeEEEEEEEECCEEEEEEEEE
Confidence 34578999999999999999999975211 000 001222233333344444 6899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|||+.+|...+..+++.+|++|+|+|++.....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999888999999999999999876544333333 22222 368899999999974
No 93
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=7.2e-16 Score=153.68 Aligned_cols=114 Identities=21% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
.+..+|+|+|++|+|||||+++|+...-. .. + .+.+.......+.+++ ..+.||||
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------~~--------~------~~t~~~~~~~~~~~~~~~~~~~l~Dt 69 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--------ED--------Y------EPTKADSYRKKVVLDGEEVQIDILDT 69 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--------TT--------C------CTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--------CC--------C------CCccceEEEEEEEECCEEEEEEEEcC
Confidence 45679999999999999999999753210 00 0 0111111112233343 58999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|++..........| ..+.. .++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999999999875443333322 22222 378999999999984
No 94
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.69 E-value=5e-17 Score=163.94 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec----------C
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------D 139 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------~ 139 (761)
++..+|+|+|++|+|||||+++|+...-.... . ...+.+.......+... .
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----~---------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKF----I---------------TTVGIDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEE----E---------------EEEEEEEEEEEEEEEC-------CCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCC----C---------------CceeEEEEEEEEEECCccccccccCcee
Confidence 45678999999999999999999642110000 0 00111111111222222 5
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH-H----cCCCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR-R----YEVPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~iiviNK~D~~ 205 (761)
..+.||||||+.+|...+..+++.+|++|+|+|+++....+....|.... . .++|+++|+||+|+.
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 78999999999999999999999999999999998865544443332221 1 478999999999984
No 95
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=2.9e-16 Score=152.73 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
.+..+|+++|++|+|||||+++|+...-.. ++.+ ..+... ...+.+++ ..+.||||
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~---t~~~~~---~~~~~~~~~~~~~~~~Dt 64 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS----------------DYDP---TIEDSY---TKICSVDGIPARLDILDT 64 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS----------------SCCT---TCCEEE---EEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc----------------ccCC---CcCceE---EEEEEECCEEEEEEEEEC
Confidence 456899999999999999999997532100 0000 011111 12233443 67899999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-H----HHHHHcCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-D----RQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~----~~~~~~~~p~iiviNK~D~~ 205 (761)
||+.+|.......++.+|++|+|+|+++......... + +.....++|+++|+||+|+.
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 65 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999998888889999999999999987543332222 2 22223588999999999974
No 96
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=3.4e-16 Score=150.17 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|+...-. .. +.+ ..+... .....+......+.||||||+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~--------~~--------~~~---t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV--------EK--------YDP---TIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--------CS--------CCC---CSEEEE-EEEEESSSCEEEEEEEEECSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--------CC--------CCC---CccceE-EEEEEECCEEEEEEEEECCChHH
Confidence 57999999999999999999752110 00 000 001111 11122233457899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~----~~~~p~iiviNK~D~~ 205 (761)
|.......++.+|++++|+|+++....+... .+..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9999999999999999999998753333222 222222 2489999999999984
No 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=2.3e-16 Score=156.52 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=53.3
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHH-HHcCCCEEEEEeCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQM-RRYEVPRLAFINKLDR 204 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~-~~~~~p~iiviNK~D~ 204 (761)
..+.||||||+.+|...+...++.+|++|+|+|++++...+....| ..+ ...++|+++|+||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 7899999999999999899999999999999999987655554433 233 3356899999999993
No 98
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=1.7e-16 Score=155.34 Aligned_cols=116 Identities=19% Similarity=0.150 Sum_probs=78.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-.. ++.+ ..+... .....+......+.+|||||+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVD----------------DYDP---TIEDSY-LKHTEIDNQWAILDVLDTAGQ 76 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CCCT---TCCEEE-EEEEEETTEEEEEEEEECCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCC---Ccccee-EEEEEeCCcEEEEEEEECCCc
Confidence 46789999999999999999997431100 0000 011111 111222223356778999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-----HHHHHcCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-----RQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-----~~~~~~~~p~iiviNK~D~~~ 206 (761)
.+|......+++.+|++|+|+|+++....+....| +.....++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 99998889999999999999999986433332222 222336789999999999853
No 99
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=1.5e-16 Score=155.03 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=71.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec---CeEEEEEe
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIID 146 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liD 146 (761)
++..+|+++|++|+|||||+++|+...-.. +....++.+.....+.+. ...+.|||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 64 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ---------------------QYKATIGADFLTKEVTVDGDKVATMQVWD 64 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT---------------------TC---CCCSCEEEEECCSSSCCEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc---------------------ccCCccceEEEEEEEEEcCCcEEEEEEEE
Confidence 467899999999999999999997532110 000112222222233333 46899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH-------cCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR-------YEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~-------~~~p~iiviNK~D~~ 205 (761)
|||+.+|...+...++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 9999999988888899999999999998865444433332 2221 578999999999984
No 100
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4.2e-16 Score=150.14 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|+...-.... . .+ .+.+.. ...........+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~------~---~t----------~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESY------I---PT----------VEDTYR-QVISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSC------C---CC----------SCEEEE-EEEEETTEEEEEEEEECCSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC------C---CC----------ccccEE-EEEEECCEEEEEEEEECCCchh
Confidence 57999999999999999999742110000 0 00 111111 1112223346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (761)
|......+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 99999999999999999999987543322 233333333 378999999999974
No 101
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=8.7e-17 Score=161.36 Aligned_cols=115 Identities=19% Similarity=0.106 Sum_probs=81.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+|+|++|+|||||+++|+...-.. +...+++.......+.+++ ..+.||||
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 76 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP---------------------SFITTIGIDFKIKTVDINGKKVKLQLWDT 76 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC---------------------SSSCCCSCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc---------------------ccCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 456799999999999999999997432100 0012233333334455555 68999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999988888899999999999999876443333222 33333 378999999999983
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.69 E-value=7.2e-16 Score=150.78 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
+..+|+++|++|+|||||+++|+...- .. . + ...+.......+.+.+ +.+.|||||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~-------~--------~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VE-------D--------Y------EPTKADSYRKKVVLDGEEVQIDILDTA 74 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CC-------S--------C------CTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CC-------c--------C------CCccceEEEEEEEECCEEEEEEEEECC
Confidence 457899999999999999999975321 00 0 0 0011111112233333 589999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHH----HcCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~~p~iiviNK~D~~ 205 (761)
|+.+|...+..+++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999875443333222 2222 2379999999999974
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=4.7e-17 Score=159.14 Aligned_cols=114 Identities=21% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
++..+|+++|++|+|||||+++|+... ... . ..|+......+.+++..+.+|||||
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G 71 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE--VVT---T-------------------KPTIGFNVETLSYKNLKLNVWDLGG 71 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--EEE---E-------------------CSSTTCCEEEEEETTEEEEEEEEC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--cCc---c-------------------CCcCccceEEEEECCEEEEEEECCC
Confidence 456789999999999999999995211 100 0 1122222344566789999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHH----HcCCCEEEEEeCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR----RYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~----~~~~p~iiviNK~D~~~~ 207 (761)
+.+|...+..+++.+|++|+|+|+++....+.. ..+.... ..++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp ---CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999888888889999999999999876544333 2233333 257899999999998643
No 104
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=5.3e-16 Score=148.50 Aligned_cols=113 Identities=20% Similarity=0.138 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|++|+|||||+++|+...-.. . +.+ ..+ +.......+......+.||||||+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~--------~--------~~~---~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE--------K--------YDP---TIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS--------C--------CCT---TCC-EEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc--------c--------CCC---Ccc-eeEEEEEEECCEEEEEEEEECCCchh
Confidence 579999999999999999997532110 0 000 001 11111222222335699999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~----~~~~p~iiviNK~D~~ 205 (761)
|.......++.+|++++|+|+.+....+... .+..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 9999999999999999999998754333222 222222 2479999999999974
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=4e-17 Score=160.86 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=80.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+.. ... .. ..|+......+.+++..+.+|||||+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~--~~~---------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~ 76 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG--DVV---------------TT-------VPTVGVNLETLQYKNISFEVWDLGGQ 76 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS--CCE---------------EE-------CSSTTCCEEEEEETTEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC--CCC---------------Cc-------CCCCceEEEEEEECCEEEEEEECCCC
Confidence 4568999999999999999999421 110 00 00222223345667899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHHHHHH----cCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
.+|...+..+++.+|++|+|+|+++....+.. ..+..... .++|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 98887777788999999999999876443332 22333322 37899999999999654
No 106
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=7.5e-17 Score=161.09 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=80.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+|+|++|+|||||+++|+........ . ...|.+.......+......+.||||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~-------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 66 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------K-------------ATIGADFLTKEVMVDDRLVTMQIWDTAG 66 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC------C-------------CCCSEEEEEEEEESSSCEEEEEEEEECS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC------C-------------CcccceEEEEEEEECCEEEEEEEEeCCC
Confidence 45789999999999999999999753211000 0 0012222222222223347899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHH-------cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR-------YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~-------~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++|+|+|++++...+....|.. +.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp SGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred cHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 99988777888899999999999988654444433322 211 478999999999985
No 107
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.69 E-value=8e-17 Score=154.76 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-. .. +. ...|.+.......+......+.||||||+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--------~~--------~~---~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT--------KD--------YK---KTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--------CC--------SS---CCCSSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC--------CC--------CC---CceEEEEEEEEEEECCEEEEEEEEcCCCc
Confidence 4568999999999999999999742110 00 00 00122222222222223468999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH--cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~--~~~p~iiviNK~D~~ 205 (761)
.+|...+..+++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 99888888899999999999999876433333223 22222 489999999999974
No 108
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=9.6e-17 Score=158.48 Aligned_cols=116 Identities=19% Similarity=0.136 Sum_probs=82.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-.. . + ....|.+.......+......+.||||||+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~--------~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP--------E--------L---AATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--------T--------C---CCCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc--------c--------C---CCccceEEEEEEEEECCeEEEEEEEeCCCc
Confidence 35689999999999999999997532110 0 0 001233444444444445578999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
.+|...+..+++.+|++|+|+|++..........| ..+.. .++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 99988889999999999999999886544443333 33332 368899999999984
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.68 E-value=9.4e-17 Score=158.67 Aligned_cols=117 Identities=19% Similarity=0.105 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
....+|+++|+.|+|||||+++|+...-.... ....|.+.......+......+.||||||
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 79 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------DLTIGVEFGARMVNIDGKQIKLQIWDTAG 79 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCSSEEEEEEEETTEEEEEEEECCTT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-------------------CCcccceeEEEEEEECCEEEEEEEEECCC
Confidence 34678999999999999999999753211100 00122233322222222336899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 80 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999988888899999999999999876544433323 33333 378999999999984
No 110
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=5.6e-17 Score=169.74 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+...- ...++ .|+|+......+.+ +..+.+|||||+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~---------------~v~~~------pg~tv~~~~~~~~~-~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ---------------RVGNW------PGVTVERKSGLVKK-NKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC---------------CCCSS------SCCCCSCEEEECTT-CTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC---------------cccCC------CCCcEEEEEEEEec-CCeEEEEECCCcC
Confidence 46899999999999999999953210 01111 47787776666766 7899999999998
Q ss_pred CcH------HHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 152 DFT------VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 152 ~f~------~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
+|. .....+++ .+|++|+|+|++.. ......+.++...++|+++|+||+|+
T Consensus 61 ~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 61 SMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDV 119 (272)
T ss_dssp CSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHH
T ss_pred ccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhh
Confidence 885 23344555 59999999999873 33445556677789999999999996
No 111
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.68 E-value=2.9e-16 Score=151.20 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=68.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
+.+|+++|++|+|||||+++|+........ +...+.........+......+.+|||||+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 62 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-------------------EMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------CEEEEEEEETTEEEEEEEECCCCC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-------------------cCCCcCCeeeEEEEECCeEEEEEEEECCCcc
Confidence 468999999999999999999632211100 0001111122222222334688899999999
Q ss_pred CcHH-HHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHHH----cCCCEEEEEeCCCCC
Q 004316 152 DFTV-EVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~-~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~~p~iiviNK~D~~ 205 (761)
+|.. ....+++.+|++++|+|+++....+.... +..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp -------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 9876 45566889999999999987543333222 233332 279999999999984
No 112
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=151.88 Aligned_cols=116 Identities=19% Similarity=0.107 Sum_probs=72.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|++|+|||||+++|+....... ....|.+.......+......+.+|||||+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 62 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL--------------------HEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------------------------CCCSSSSEEEEEEEETTEEEEEEEECCC--
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc--------------------cCccccceeEEEEEECCEEEEEEEEecCCC
Confidence 356899999999999999999963211000 001344443333333333457899999999
Q ss_pred CC--cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHHc----CCCEEEEEeCCCCCC
Q 004316 151 VD--FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY----EVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~--f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~----~~p~iiviNK~D~~~ 206 (761)
.+ +.......++.+|++++|+|+++....+....| ..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred CccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 88 444555667889999999999875443333333 334443 799999999999853
No 113
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.68 E-value=1.8e-17 Score=167.86 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=87.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
....+|+++|++|+|||||+++|+...-.. . .. ...|++.......+...+..+.||||||
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~-~---~~---------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 73 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEK-K---YV---------------ATLGVEVHPLVFHTNRGPIKFNVWDTAG 73 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTC-E---EE---------------TTTTEEEEEEEEEETTEEEEEEEEEECS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-C---CC---------------CccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 455789999999999999999965321100 0 00 1145666666666666678999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHH-H--cCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR-R--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~iiviNK~D~~~ 206 (761)
+.+|......+++.+|++|+|+|+++....+....|.... . .++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp GGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred hHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 9999888888999999999999999876555544443332 2 2899999999999853
No 114
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.68 E-value=1.1e-15 Score=146.01 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+++|+.|+|||||+++|+........ . .+ .+.. ......+....+.+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~---~~----------~~~~-~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC------D---PT----------IEDS-YRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC------C---TT----------CCEE-EEEEEEETTEEEEEEEEECCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc------C---Cc----------cceE-EEEEEEECCEEEEEEEEECCCchh
Confidence 47999999999999999999753211000 0 00 0101 111111222346789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHH-HHHHHH----cCCCEEEEEeCCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~~p~iiviNK~D~~~ 206 (761)
|...+..+++.+|++++|+|+.+....+.... +..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999999999999999987544333222 223322 2799999999999853
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=159.37 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=78.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
++..+|+|+|++|+|||||+++|+...... +....++.......+..++ ..+.||||
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt 81 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ---------------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDT 81 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------------------------CCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc---------------------cCCCcccceeEEEEEEECCeeeEEEEEcC
Confidence 457899999999999999999996321110 0011222222223333444 78999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 99988877788899999999999999886544443333 22322 478999999999974
No 116
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.68 E-value=1.6e-16 Score=158.83 Aligned_cols=116 Identities=19% Similarity=0.137 Sum_probs=82.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+++|++|+|||||+++|+...-.. . ....++.......+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN--------D-------------YISTIGVDFKIKTVELDGKTVKLQIWDT 64 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT--------T-------------CCCSSCCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--------C-------------CCCcccceeEEEEEEECCEEEEEEEEeC
Confidence 456799999999999999999997532110 0 011222222233344444 58999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~~ 206 (761)
||+.+|...+..+++.+|++|+|+|++.....+....| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999988888889999999999999986555544433 23332 3689999999999853
No 117
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.68 E-value=7.3e-16 Score=155.02 Aligned_cols=126 Identities=23% Similarity=0.201 Sum_probs=83.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec---CeEEEEEeC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDT 147 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDT 147 (761)
+..+|+++|++|+|||||+++|+...-. . .. ..++ .....+.++ +..+.||||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~-----~~---------------~~~~--~~~~~~~~~~~~~~~~~i~Dt 61 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--D-----TQ---------------TSIT--DSSAIYKVNNNRGNSLTLIDL 61 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--C-----BC---------------CCCS--CEEEEEECSSTTCCEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--c-----cc---------------CCcc--eeeEEEEecCCCccEEEEEEC
Confidence 4578999999999999999999753210 0 00 1111 111224444 578999999
Q ss_pred CCCCCcHH-HHHHHHHhcCeEEEEEeCCCCcchhHH---HHHHHHH------HcCCCEEEEEeCCCCCCCC-hHHHHHHH
Q 004316 148 PGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSI---TVDRQMR------RYEVPRLAFINKLDRMGAD-PWKVLDQA 216 (761)
Q Consensus 148 PG~~~f~~-~~~~al~~aD~ailVvDa~~g~~~qt~---~~~~~~~------~~~~p~iiviNK~D~~~~~-~~~~~~~i 216 (761)
||+.+|.. .+...++.+|++|+|+|++.. ..+.. ..|.... ..++|+++|+||+|+.... .....+.+
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 62 PGHESLRFQLLDRFKSSARAVVFVVDSAAF-QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp CCCHHHHHHHHHHHGGGEEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhCCEEEEEEECCCc-CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 99999988 567778999999999999862 22222 2233221 2368999999999997653 44555555
Q ss_pred HHHhC
Q 004316 217 RSKLR 221 (761)
Q Consensus 217 ~~~l~ 221 (761)
.+.++
T Consensus 141 ~~~l~ 145 (214)
T 2fh5_B 141 EKELN 145 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 118
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.8e-16 Score=156.77 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=80.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
...+|+++|+.|+|||||+++|+...-. .. .. .+ .+... ...+.+++ ..+.|||||
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~---~~-----~t----------~~~~~---~~~~~~~~~~~~~~i~D~~ 74 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EE---YV-----PT----------VFDHY---AVSVTVGGKQYLLGLYDTA 74 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-CS---CC-----CS----------SCCCE---EEEEESSSCEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CC---CC-----Cc----------cccee---EEEEEECCEEEEEEEEECC
Confidence 4578999999999999999999753210 00 00 00 01111 11233333 789999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH--HHHHHHHc--CCCEEEEEeCCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT--VDRQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~--~~~~~~~~--~~p~iiviNK~D~~~ 206 (761)
|+.+|...+..+++.+|++|+|+|+++....+... .+..+... ++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp CSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred CCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999888888899999999999998865444432 23444444 899999999999864
No 119
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=7.7e-17 Score=181.31 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=69.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+|+|++|+|||||+|+|+.....+ . ....|+|.+.....+.++++.++||||||+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v------s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAI--------------V------SHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--------------------------------------CEEEEETTEEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------c------CCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 469999999999999999996432111 1 11257788887788888999999999999988
Q ss_pred cHHHHH--------HHHHhcCeEEEEEeCCCCcch----hHHHHHHHHHHcCCCEEEEEeCCCCCCC
Q 004316 153 FTVEVE--------RALRVLDGAILVLCSVGGVQS----QSITVDRQMRRYEVPRLAFINKLDRMGA 207 (761)
Q Consensus 153 f~~~~~--------~al~~aD~ailVvDa~~g~~~----qt~~~~~~~~~~~~p~iiviNK~D~~~~ 207 (761)
+...+. .+++.+|++|+|+|++++... ....++..+. ++|+++|+||+|+...
T Consensus 294 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 294 AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp --------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 765442 256889999999999998776 3444443333 7899999999998643
No 120
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.67 E-value=1.2e-16 Score=153.97 Aligned_cols=116 Identities=21% Similarity=0.085 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-.... . ...|.+.......+......+.+|||||+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------~-------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 65 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH------I-------------TTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC------C-------------CCCSCEEEEEEEESSSCEEEEEEEECCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC------C-------------CccceEEEEEEEEECCEEEEEEEEECCCc
Confidence 3568999999999999999999753211000 0 00122222222222223467899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHH---HcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~---~~~~p~iiviNK~D~~ 205 (761)
.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp -------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 99988888888999999999999886544443333 2222 2578999999999984
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=2.2e-16 Score=155.10 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=82.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+... .. + +...++|++.....+.+++..+.+|||||+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~---~~---~---------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 64 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN---VY---I---------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC---EE---E---------------EECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cc---c---------------cCCCCeeccceEEEEEeCCcEEEEEECCCc
Confidence 34689999999999999999996421 00 0 011456766666777888999999999999
Q ss_pred CCcH------HHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 151 VDFT------VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 151 ~~f~------~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
.+|. ......++ .+|++++|+|+.. .......+..+...++|+++|+||+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (188)
T 2wjg_A 65 YSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDL 124 (188)
T ss_dssp SCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhc
Confidence 9884 22344454 4999999999875 233444556666778999999999996
No 122
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.67 E-value=1.2e-15 Score=155.35 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=77.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|.+|+|||||+++|+... .. +.. ..++|.......+.+++..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~--~~----~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN--VD----VQS---------------YSFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC--EE----EEC---------------C-----CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--Cc----cCC---------------CCCcceeeeeeeeecCCCeEEEEECCCC
Confidence 46789999999999999999996421 10 000 1334555555556677889999999999
Q ss_pred CC------c---HHHHHHHHHhcCeEEEEEeCCCCcchh---HHHHHHHHHHc--CCCEEEEEeCCCCCC
Q 004316 151 VD------F---TVEVERALRVLDGAILVLCSVGGVQSQ---SITVDRQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~------f---~~~~~~al~~aD~ailVvDa~~g~~~q---t~~~~~~~~~~--~~p~iiviNK~D~~~ 206 (761)
.+ . ...+....+.+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 87 LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp TTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 43 2 122334467789999999998765432 23445555554 899999999999853
No 123
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.67 E-value=2.9e-16 Score=150.73 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=63.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+..... ......|.+.. ....+......+.+|||||+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG--------------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------------------CEEE-EEEEETTEEEEEEEEECC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc--------------------CCCCccccceE-EEEEECCEEEEEEEEECCCCc
Confidence 347999999999999999999421100 00011233332 222333345688999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHH----cCCCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~iiviNK~D~~~ 206 (761)
+|.......++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred cchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99988889999999999999998754433332 2333333 3789999999999853
No 124
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=170.29 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+-.+|+|+|++|+|||||+++|+... + ... ..|+......+.+++..++||||||+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~--~---------------~~~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE--I---------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC--C---------------EEE-------EEETTEEEEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC--C---------------CCc-------ccccceEEEEEecCcEEEEEEECCCC
Confidence 34589999999999999999994211 1 000 01444445567788999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHH-HHHH---cCCCEEEEEeCCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMRR---YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~---~~~p~iiviNK~D~~~~ 207 (761)
.+|...+..+++.+|++|+|+|+++........ .+. .... .++|+++|+||+|+...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999988999999999999999997654433322 222 2222 38899999999999754
No 125
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.67 E-value=1.4e-16 Score=156.98 Aligned_cols=115 Identities=22% Similarity=0.218 Sum_probs=78.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
++..+|+++|++|+|||||+++|+...-.. . ....++.+.....+.+++ ..+.||||
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 76 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--------R-------------TEATIGVDFRERAVDIDGERIKIQLWDT 76 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS--------S-------------CCCCCSCCEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--------C-------------CCCCcceEEEEEEEEECCEEEEEEEEEC
Confidence 456899999999999999999997532110 0 001112222222333343 68999999
Q ss_pred CCCCCcH-HHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHH----HcCCCEEEEEeCCCCC
Q 004316 148 PGHVDFT-VEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~-~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~~p~iiviNK~D~~ 205 (761)
||+.+|. ..+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999988 6778889999999999999875443333222 2222 3478999999999984
No 126
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=2.3e-16 Score=153.97 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=75.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
+..+|+++|++|+|||||+++|+...-.. ++.+ ..+.+. ...+.+++ +.+.|||||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~----------------~~~~---t~~~~~---~~~~~~~~~~~~~~l~Dt~ 62 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD----------------SYDP---TIENTF---TKLITVNGQEYHLQLVDTA 62 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS----------------CCCT---TCCEEE---EEEEEETTEEEEEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCC---CccccE---EEEEEECCEEEEEEEEeCC
Confidence 45789999999999999999997432100 0000 012222 22233344 678999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-----HHHHHcCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-----RQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-----~~~~~~~~p~iiviNK~D~~ 205 (761)
|+.+|.......++.+|++|+|+|+++.........| ..+...++|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999877777888999999999999875443333322 22223479999999999985
No 127
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.66 E-value=1e-15 Score=150.73 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=68.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
-.+|+++|+.|+|||||+++|+...-.. . + .+.+.......+.+++ +.+.||||||
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD--------E--------Y------DPTIEDSYRKQVVIDGETCLLDILDTAG 78 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--------C--------C------CTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc--------c--------c------CCccceEEEEEEEECCEEEEEEEEECCC
Confidence 3589999999999999999997532100 0 0 0011111112233333 6799999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH----cCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~iiviNK~D~~~ 206 (761)
+.+|...+..+++.+|++++|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 9999988899999999999999998765444433332 2222 3799999999999853
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.66 E-value=8.9e-16 Score=152.42 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=78.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe---ecCeEEEEE
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---WKDYQINII 145 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~i~li 145 (761)
.++..+|+++|..|+|||||++++..... . +...+.+......... .....+.||
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~---------~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 74 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS---------P-------------NETLFLESTNKIYKDDISNSSFVNFQIW 74 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC---------G-------------GGGGGCCCCCSCEEEEECCTTSCCEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC---------C-------------cceeeeccccceeeeeccCCCeeEEEEE
Confidence 34567899999999999999998743100 0 0112222222233322 345789999
Q ss_pred eCCCCCCcHHHH---HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCCC
Q 004316 146 DTPGHVDFTVEV---ERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 146 DTPG~~~f~~~~---~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~iiviNK~D~~~ 206 (761)
||||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 999999998777 789999999999999998733333333333332 3889999999999853
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.3e-15 Score=150.83 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|++|+|||||+++|+...-. .. +.+ ..+.+.. ....+......+.||||||+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--------~~--------~~~---t~~~~~~-~~~~~~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--------DT--------YIP---TIEDTYR-QVISCDKSVCTLQITDTTGS 66 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC--------CT--------TSC---CCCEEEE-EEEEETTEEEEEEEEECCGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC--------Cc--------ccC---cccccee-EEEEECCEEEEEEEEeCCCh
Confidence 4568999999999999999999752110 00 000 0111111 11222233468999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHHH-----cCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR-----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~~-----~~~p~iiviNK~D~~~ 206 (761)
.+|......+++.+|++|+|+|++......... .+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 999999999999999999999998754333222 2333322 3789999999999853
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.66 E-value=1.2e-16 Score=155.97 Aligned_cols=116 Identities=17% Similarity=0.064 Sum_probs=73.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-.... .. + .+.... ....+......+.||||||+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~----~~-----t----------~~~~~~-~~~~~~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VP-----T----------VFDNFS-ANVVVNGATVNLGLWDTAGQ 66 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CB-CCCC-------CEEECCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CC-----e----------eeeeEE-EEEEECCEEEEEEEEECCCC
Confidence 4468999999999999999999753211000 00 0 000000 01112223467789999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHH--cCCCEEEEEeCCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~~p~iiviNK~D~~~ 206 (761)
.+|...+..+++.+|++|+|+|+++....+... .| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 999888888899999999999998765544443 33 33333 2799999999999853
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=7.7e-17 Score=181.62 Aligned_cols=115 Identities=27% Similarity=0.347 Sum_probs=89.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC-
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG- 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG- 149 (761)
..++|+|+|++|+|||||+|+|+...- ..+ ....|+|.+.....+.|.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v---------------~~~~g~t~~~~~~~~~~~~~~~~liDT~G~ 81 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERI-----SIV---------------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEE-----C--------------------------CEEEECTTCSSCCEEECCCC-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC-----ccc---------------CCCCCcceeEEEEEEEECCceEEEEECCCC
Confidence 467899999999999999999953110 001 11268898888888899999999999999
Q ss_pred -------CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 -------HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 -------~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+..|...+..+++.+|++|+|+|+..+....+..+++.+...++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 82 DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -----CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 55677778889999999999999999999999999999999999999999999974
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.5e-16 Score=159.89 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+|+|++|+|||||+++|+....... ....++.......+.+++ ..+.||||
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt 69 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD---------------------SKSTIGVEFATRTLEIEGKRIKAQIWDT 69 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------------------CCSEEEEEEEETTEEEEEEEECC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCcccceeEEEEEEECCEEEEEEEEEC
Confidence 4567999999999999999999975321110 001122222223344444 68999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999988888889999999999999887555544333 33333 378999999999984
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.66 E-value=3.5e-16 Score=178.38 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+|+|.+|+|||||+++|+...... . ..|+......+.++++.+.||||||
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-----------------~-------~~T~~~~~~~~~~~~~~~~l~Dt~G 375 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-----------------T-------IPTVGFNVETVTYKNVKFNVWDVGG 375 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-----------------C-------CCCSSEEEEEEESSSCEEEEEEECC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-----------------c-------CCccceeEEEEEeCCEEEEEEECCC
Confidence 345789999999999999999997532100 0 1134444555777889999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~~~ 207 (761)
+.+|...+..+++.+|++|+|+|+++....+....| ..... .++|+|+|+||+|+...
T Consensus 376 ~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 376 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp CGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred cHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 999998888899999999999999987554443322 22222 47999999999998653
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.65 E-value=4.6e-16 Score=175.12 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=90.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC-
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 151 (761)
.+|+|+|.+|+|||||+|+|+.....+ +.++ .|+|.+.....+.+++..+.||||||+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--------------vs~~------~gTT~d~~~~~i~~~g~~~~l~DTaG~~~ 303 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--------------VTDI------PGTTRDVISEEIVIRGILFRIVDTAGVRS 303 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--------------CCCS------SCCSSCSCCEEEEETTEEEEEEESSCCCS
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc--------------cCCC------CCeeeeeEEEEEecCCeEEEEEECCCccc
Confidence 589999999999999999998654222 1111 5677777777888899999999999998
Q ss_pred CcH--------HHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 152 DFT--------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~--------~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
++. .....+++.+|++|+|+|++++...+...++..+ .++|+++|+||+|+..
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 653 3456788999999999999988777777777665 4889999999999853
No 135
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=3.6e-16 Score=156.41 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEE--eecCeEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC--AWKDYQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~--~~~~~~i~liDTP 148 (761)
+..+|+++|++|+|||||+++|+...-.-.. .+++.......+ ....+.+.|||||
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----------------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----------------------IPTVFDNYSANVMVDGKPVNLGLWDTA 86 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-C----------------------CCCSEEEEEEEEECC-CEEEEEEEEEC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCc----------------------CCeecceeEEEEEECCEEEEEEEEECC
Confidence 4568999999999999999999753211000 011111111222 2334667799999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (761)
|+.+|......+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred CchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 99999888888899999999999999876555543 33 344443 899999999999854
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=7.7e-16 Score=159.05 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=90.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
.-.+|+++|++|+|||||+|+|+.....+... ...|+|.......+.+++..++||||||.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-------------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL-------------------GATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC-------------------CCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 34689999999999999999997543322110 01356776767778889999999999998
Q ss_pred --------CCcHHHHHHHH----HhcCeEEEEEeCCCCcchhHHHHHHHHHHc------CCCEEEEEeCCCCCCCChH
Q 004316 151 --------VDFTVEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRRY------EVPRLAFINKLDRMGADPW 210 (761)
Q Consensus 151 --------~~f~~~~~~al----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~~p~iiviNK~D~~~~~~~ 210 (761)
.+|..++.+++ +.+|++|+|+|+.. ....+..+++.+... +.|+|+|.||+|+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 157 (247)
T 3lxw_A 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH 157 (247)
T ss_dssp SSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH
Confidence 56777777776 89999999999975 666777777777664 7899999999999765543
No 137
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.65 E-value=1.8e-16 Score=159.94 Aligned_cols=117 Identities=21% Similarity=0.153 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (761)
+...+|+++|++|+|||||+++|+...-. .. .. ...|.+............ ..+.|||||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~---~~---------------~t~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-KN---YN---------------ATVGAVNHPVTFLDDQGNVIKFNVWDTA 69 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-CE---EE---------------TTTTEEEEEEEEEBTTSCEEEEEEEEEC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-CC---CC---------------CccceeeEEEEEEeCCCcEEEEEEEecC
Confidence 35678999999999999999999532100 00 00 001222221111111111 689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHH---HHcCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQM---RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~---~~~~~p~iiviNK~D~~ 205 (761)
|+.+|.......++.+|++|+|+|++++...+....| ..+ ...++|+++|+||+|+.
T Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp SGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999888888889999999999999987665554333 222 22378999999999985
No 138
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.65 E-value=5.1e-16 Score=151.89 Aligned_cols=115 Identities=16% Similarity=0.029 Sum_probs=78.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+...-.-.. . .+ .+.+. .....+......+.||||||+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~------~---~t----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEY------I---PT----------VFDNY-SANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSC------C---CC----------SCCEE-EEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCc------C---Cc----------cccee-EEEEEECCEEEEEEEEECCCCH
Confidence 357999999999999999999753210000 0 00 01011 1111222334678899999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (761)
+|......+++.+|++|+|+|++++...+... .| ..+... ++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred hHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 99887778889999999999998865555443 23 334433 899999999999853
No 139
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.65 E-value=3e-17 Score=163.41 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=80.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+++|++|+|||||+++|+.. ....+...+++.+.....+.+++ +.+.||||
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 89 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD---------------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC---------------------CCCCHHHHHHCCSEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC---------------------CCCCCcCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 45789999999999999999998421 00111223344444444555555 68999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HHHc---CCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY---EVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~---~~p~iiviNK~D~~ 205 (761)
||+.+|...+..+++.+|++|+|+|+++....+....|.. +... ++|+++|+||+|+.
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 9999998888888999999999999998765555444433 3322 78999999999985
No 140
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=156.07 Aligned_cols=116 Identities=20% Similarity=0.157 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+++|.+|+|||||+++|+...-.. . +.+ ..+.+. .....+....+.+.||||||
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~~~l~Dt~G 81 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSE--------G--------YDP---TVENTY-SKIVTLGKDEFHLHLVDTAG 81 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------C--------CCC---CSEEEE-EEEEC----CEEEEEEEECC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCC--------C--------CCC---ccceEE-EEEEEECCEEEEEEEEECCC
Confidence 467899999999999999999997532110 0 000 011111 22233344568899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH-HH----HcCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~-~~----~~~~p~iiviNK~D~~ 205 (761)
+.+|...+..+++.+|++|+|+|+++....+....|.. +. ..++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred ccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 99998888888999999999999997654444433322 22 2378999999999984
No 141
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=152.42 Aligned_cols=114 Identities=15% Similarity=0.012 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 148 (761)
+..+|+++|++|+|||||+++|+...- . .. + ...+.......+..+ ...+.|||||
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~------~~--------~------~~t~~~~~~~~~~~~~~~~~l~l~Dt~ 90 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--P------ES--------Y------TPTVFERYMVNLQVKGKPVHLHIWDTA 90 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-----------------------------CCCCCEEEEEEEEETTEEEEEEEEEC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--C------CC--------C------CCccceeEEEEEEECCEEEEEEEEECC
Confidence 456899999999999999999963210 0 00 0 000111111122233 3589999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHH--cCCCEEEEEeCCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~~p~iiviNK~D~~~ 206 (761)
|+.+|...+..+++.+|++|+|+|+++....+... .| ..+.. .++|+++|+||+|+..
T Consensus 91 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 91 GQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp --------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred CchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 99999988888999999999999998765444432 23 23333 3789999999999864
No 142
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.64 E-value=6.2e-16 Score=154.24 Aligned_cols=115 Identities=16% Similarity=0.042 Sum_probs=78.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|++|+|||||+++|+........ . .+ .+.+.. ....+......+.||||||+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~-----~t----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY----V-----PT----------VFENYI-ADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC----C-----CS----------SCCCCE-EEEEETTEEEEEEEECCCCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc----C-----Cc----------ccceEE-EEEEECCEEEEEEEEECCCch
Confidence 458999999999999999999753211000 0 00 011111 111222233689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHH--HHHHHHHHc--CCCEEEEEeCCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSI--TVDRQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~--~~~~~~~~~--~~p~iiviNK~D~~~ 206 (761)
+|......+++.+|++|+|+|++.....+.. ..+..+... ++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 9988888889999999999999875443333 233344444 899999999999864
No 143
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=3.3e-15 Score=148.42 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=76.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (761)
+...+|+++|.+|+|||||+++|+....... . ..+++.+.....+.++ ...+.+|||
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------------~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt 79 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-------------------H--EPENPEDTYERRIMVDKEEVTLVVYDI 79 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG-------------------G--TTTSCTTEEEEEEEETTEEEEEEEECC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc-------------------C--CCCcccceEEEEEEECCEEEEEEEEec
Confidence 4567899999999999999999942111110 0 0112222222223334 357889999
Q ss_pred CCCCCcHH-HHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~-~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~~ 206 (761)
||+.+|.. ....+++.+|++|+|+|+++.........| ..+.. .++|+++|.||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998865 556678999999999999875433333222 23332 3799999999999853
No 144
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=9.9e-16 Score=151.58 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+++|++|+|||||+++|+...-.... . .+ .+.+.. ....+....+.+.||||||
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~----~-----~t----------~~~~~~-~~~~~~~~~~~~~i~Dt~G 80 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY----V-----PT----------VFENFS-HVMKYKNEEFILHLWDTAG 80 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----C-----CC----------SEEEEE-EEEEETTEEEEEEEEEECC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc----C-----Ce----------eeeeeE-EEEEECCEEEEEEEEECCC
Confidence 34568999999999999999999753210000 0 00 111111 1112222346679999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHHH-HHHHc--CCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~~-~~~~~--~~p~iiviNK~D~~~ 206 (761)
+.+|......+++.+|++|+|+|+++....... ..|. .+... ++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred cHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999988888899999999999999986554442 3333 33333 689999999999863
No 145
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.63 E-value=3.1e-15 Score=151.15 Aligned_cols=114 Identities=19% Similarity=0.148 Sum_probs=78.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+|+|..++|||||+++++... . .. ++. ...|................+.||||+|+.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~--f------~~--------~~~---~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS--F------DN--------TYQ---ATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--C------C---------------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC--C------CC--------CcC---CccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 479999999999999999997421 0 00 000 0112222222333333447889999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHH---HcCCCEEEEEeCCCCC
Q 004316 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR---RYEVPRLAFINKLDRM 205 (761)
Q Consensus 153 f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~---~~~~p~iiviNK~D~~ 205 (761)
|......+++.+|++|+|+|.+.....+...-|. .+. ..++|+++|.||+|+.
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 9999999999999999999998765544443332 222 2478999999999984
No 146
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=153.53 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=77.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
.+..+|+++|++|+|||||+++|+... ... . + ..++.......+.+++ ..+.||||
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~------~--------~------~~t~~~~~~~~~~~~~~~~~~~i~Dt 75 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT------E--------Y------IPTAFDNFSAVVSVDGRPVRLQLCDT 75 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------------------------CCSSEEEEEEEEETTEEEEEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCC------C--------C------CCcccceeEEEEEECCEEEEEEEEEC
Confidence 456789999999999999999997422 000 0 0 0111111122233444 57889999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (761)
||+.+|...+..+++.+|++|+|+|+++........ .| ..+... ++|+++|+||+|+..
T Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 76 AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999999877777889999999999998765544432 23 333332 899999999999853
No 147
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.63 E-value=3.6e-16 Score=156.00 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec----CeEEEEEe
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----DYQINIID 146 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~liD 146 (761)
...+|+++|++|+|||||+++|+........ + ....+..+.....+.++ ...+.|||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~-----~~~t~~~~~~~~~~~~~~~~~~~~~~l~D 79 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK--------------D-----YAMTSGVEVVVAPVTIPDTTVSVELFLLD 79 (208)
T ss_dssp EEEEEEEC-----------------------------------------------------CEEEECTTSSEEEEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC--------------C-----CCCccceEEEEEEEEECCcccEEEEEEEE
Confidence 3468999999999999999999643111100 0 00111112222334444 46899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH------cCCCEEEEEeCCCCC
Q 004316 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~------~~~p~iiviNK~D~~ 205 (761)
|||+.+|...+..+++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+.
T Consensus 80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 999999998888889999999999999887554443333 33333 478999999999985
No 148
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.63 E-value=9.3e-16 Score=154.01 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=77.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|++|+|||||+++|+...-.. . +.+. .+... .....+......+.||||||+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~--------~--------~~~t---~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 67 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPT--------D--------YIPT---VFDNF-SANVAVDGQIVNLGLWDTAGQ 67 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------CCCS---SCCCE-EEEEECSSCEEEEEEECCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc--------c--------CCCc---cceeE-EEEEEECCEEEEEEEEECCCc
Confidence 45689999999999999999997432100 0 0000 01111 111112223468999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~ 205 (761)
.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp CCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred HHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 999888888899999999999998765444432 23 333333 89999999999974
No 149
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.7e-15 Score=150.29 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 149 (761)
..+|+++|++|+|||||+++|+....... +. ...+.+.. ..+..+ ...+.||||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~---~t~~~~~~---~~~~~~~~~~~~~i~Dt~G 82 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV----------------YV---PTVFENYV---ADIEVDGKQVELALWDTAG 82 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------------------------CCEEE---EEEEETTEEEEEEEEECTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc----------------CC---CcccceEE---EEEEECCEEEEEEEEECCC
Confidence 46899999999999999999975321100 00 00111111 112333 36899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH--HHHHHHHHc--CCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI--TVDRQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~--~~~~~~~~~--~~p~iiviNK~D~~~ 206 (761)
+.+|...+..+++.+|++|+|+|++.....+.. ..+..+... ++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp CTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred cHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 999988888888999999999999875443333 233344443 899999999999853
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=2.5e-16 Score=176.53 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+|+|+|++|+|||||+|+|+.....+. . +. .|+|.+.....+.+++..++||||||+.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-----~---------~~------~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV-----T---------DL------PGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC-----S---------CC------TTCCHHHHHHEEEETTEEEEECC------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc-----c---------CC------CCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 3699999999999999999987543321 1 11 45666666666778899999999999987
Q ss_pred cHHHHHH--------HHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 153 FTVEVER--------ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 153 f~~~~~~--------al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+...+.. +++.+|++|+|+|++++...+...++..+. +.|+++|+||+|+..
T Consensus 285 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 285 TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVE 344 (462)
T ss_dssp --------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSC
T ss_pred chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCc
Confidence 6544332 467899999999999998888877777664 479999999999864
No 151
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.62 E-value=6.2e-15 Score=144.96 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
+..+|+|+|.+|+|||||+++|+...-.. .+.+ .+... ...+.+++ ..+.|||||
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----------------~~~~----t~~~~---~~~~~~~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ----------------EESP----EGGRF---KKEIVVDGQSYLLLIRDEG 75 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC----------------CCCT----TCEEE---EEEEEETTEEEEEEEEECS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCC----CcceE---EEEEEECCEEEEEEEEECC
Confidence 44689999999999999999997421100 0000 01111 12333444 677889999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
|+.+|. +++.+|++|+|+|+++....+....| ..+.. .++|+++|.||+|+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999987 78899999999999987655553333 33333 368999999999984
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=8.6e-15 Score=145.10 Aligned_cols=114 Identities=19% Similarity=0.127 Sum_probs=76.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...-.. . +.+ ..+... .....+......+.||||||+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 86 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW--------E--------YDP---TLESTY-RHQATIDDEVVSMEILDTAGQ 86 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS--------C--------CCT---TCCEEE-EEEEEETTEEEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc--------c--------cCC---CCCceE-EEEEEECCEEEEEEEEECCCC
Confidence 45689999999999999999997532110 0 000 011111 111222333478999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HHHHHH----HcCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~~~~~----~~~~p~iiviNK~D~~ 205 (761)
.+ .......++.+|++|+|+|+++........ .+..+. ..++|+++|+||+|+.
T Consensus 87 ~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 87 ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred Cc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 98 667788899999999999998753322222 222222 2589999999999974
No 153
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=1.9e-15 Score=148.37 Aligned_cols=122 Identities=24% Similarity=0.348 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC--
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-- 150 (761)
.+|+++|++|+|||||+++|+...- .. ....|+|..... +.+. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--------~~-------------~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV--------RR-------------GKRPGVTRKIIE--IEWK--NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC--------SS-------------SSSTTCTTSCEE--EEET--TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC--------cc-------------CCCCCccceeEE--EecC--CEEEEECCCccc
Confidence 5799999999999999999964210 00 011344444333 2233 7899999994
Q ss_pred ---------CCcHHHHHHHHHh----cCeEEEEEeCCCCc-----------chhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 151 ---------VDFTVEVERALRV----LDGAILVLCSVGGV-----------QSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 151 ---------~~f~~~~~~al~~----aD~ailVvDa~~g~-----------~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
..|...+...++. +++++.|+|+.... ..++..++..+...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 57 MMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 4455555555554 45666666654321 11233455566667999999999999865
Q ss_pred CChHHHHHHHHHHh
Q 004316 207 ADPWKVLDQARSKL 220 (761)
Q Consensus 207 ~~~~~~~~~i~~~l 220 (761)
.. .+..+++.+.+
T Consensus 137 ~~-~~~~~~~~~~~ 149 (190)
T 2cxx_A 137 NV-QEVINFLAEKF 149 (190)
T ss_dssp CH-HHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHh
Confidence 43 33344444433
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=160.71 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=93.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (761)
....++|+++|++|+|||||+++|+....... .....++|.......+.+++..++|||||
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-------------------~~~~~~~t~~~~~~~~~~~~~~i~liDTp 86 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-------------------GTAAKSITKKCEKRSSSWKETELVVVDTP 86 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------------------CCSCEEEEEEETTEEEEEEECC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-------------------CCCCCceeeeEEEEEEEeCCceEEEEECC
Confidence 34678999999999999999999974321110 01113567777777788999999999999
Q ss_pred CCCCc-------HHHHHH----HHHhcCeEEEEEeCCCCcchhHHHHHHHHH-----HcCCCEEEEEeCCCCCCCC-hH-
Q 004316 149 GHVDF-------TVEVER----ALRVLDGAILVLCSVGGVQSQSITVDRQMR-----RYEVPRLAFINKLDRMGAD-PW- 210 (761)
Q Consensus 149 G~~~f-------~~~~~~----al~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~~p~iiviNK~D~~~~~-~~- 210 (761)
|+.+. ...+.+ +.+.+|++|+|+|+..... .....+..+. ....|+++|+||+|+.... ..
T Consensus 87 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 165 (239)
T 3lxx_A 87 GIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHD 165 (239)
T ss_dssp SCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------
T ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHH
Confidence 97653 223333 3345699999999875433 3333333332 2356999999999996542 22
Q ss_pred ------HHHHHHHHHhCCceeeeeecCCCcCccccceecc
Q 004316 211 ------KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLV 244 (761)
Q Consensus 211 ------~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~ 244 (761)
+.++++.+.++.....+..+.+.+....++.+++
T Consensus 166 ~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll 205 (239)
T 3lxx_A 166 YLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLL 205 (239)
T ss_dssp -----CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHH
Confidence 3466666677765554444433333333444433
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.59 E-value=6.3e-15 Score=145.17 Aligned_cols=114 Identities=19% Similarity=0.123 Sum_probs=73.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|.+|+|||||+++|+...-. . ++.+ ..+.+. .....+......+.||||||+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~---------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 79 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-S---------------EYDP---NLEDTY-SSEETVDHQPVHLRVMDTADL 79 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-S---------------CCCT---TCCEEE-EEEEEETTEEEEEEEEECCC-
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-c---------------ccCC---Ccccee-eEEEEECCEEEEEEEEECCCC
Confidence 4568999999999999999999753210 0 0000 011111 111222334478899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH------cCCCEEEEEeCCCCC
Q 004316 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~------~~~p~iiviNK~D~~ 205 (761)
.+|.. +...++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 80 ~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 80 DTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp --CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred Ccchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 88865 46788999999999999875444433333 22322 489999999999974
No 156
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.59 E-value=1.5e-14 Score=140.54 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=71.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
..+|+++|.+|+|||||+++|+...-. ++.+ ..|... .....+......+.||||||+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~-----------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ-----------------VLEK---TESEQY-KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC-----------------CCSS---CSSSEE-EEEEEETTEEEEEEEEECSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-----------------CcCC---CcceeE-EEEEEECCEEEEEEEEECCCCc
Confidence 458999999999999999999753210 0000 011111 1111222223678999999998
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHH------cCCCEEEEEeCCCCC
Q 004316 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR------YEVPRLAFINKLDRM 205 (761)
Q Consensus 152 ~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~------~~~p~iiviNK~D~~ 205 (761)
+ ..+++.+|++|+|+|+++....+....|. ++.. .++|+++|+||+|+.
T Consensus 66 ~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 66 D-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp C-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred h-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 7 35778999999999999865555554432 2222 378999999999983
No 157
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.59 E-value=1.1e-15 Score=165.36 Aligned_cols=243 Identities=15% Similarity=0.102 Sum_probs=142.2
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcc---cccccChhhhh----hhcceeeec-------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMDLER----EKGITIQSA------- 131 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~---~~~~d~~~~e~----~~giTi~~~------- 131 (761)
..+...|+++|++|+|||||+++|+... +.-...-..+.+... ..+.|....+. .+++-....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 3567889999999999999999997432 111011011111000 01111111100 111100000
Q ss_pred --------eEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004316 132 --------ATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (761)
Q Consensus 132 --------~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D 203 (761)
...+.|.++.++||||||+.++... ..+.+|++|+|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 0012367899999999999887654 4689999999999987643332111 123578999999999
Q ss_pred CCCC-ChHHHHHHHHHHhCC-ce-----eeeeecCC--CcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHH
Q 004316 204 RMGA-DPWKVLDQARSKLRH-HC-----AAVQVPMG--LEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAE 274 (761)
Q Consensus 204 ~~~~-~~~~~~~~i~~~l~~-~~-----~~~~~pi~--~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~ 274 (761)
+.+. +....++++++.++. .+ .+..+|+. .+..+.++++.+.....+|.. + ..+|+ ....+
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~--~-----~~~~~---~r~~~ 275 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA--S-----GRLQQ---VRQQQ 275 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH--T-----THHHH---HHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh--C-----ChHHH---HHHHH
Confidence 9754 344445566654332 11 22334554 566777777776654433321 1 01221 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCcceeEeecccCCCcchHHHHHHHHh
Q 004316 275 KRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLS 341 (761)
Q Consensus 275 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~SA~~~~Gi~~Lld~i~~ 341 (761)
.+..+.|.+ ++.++++|+++ ++.+++...+++++..+.+.|++|. +.|++.+..
T Consensus 276 ~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~~--------~~~~~~~~~ 329 (341)
T 2p67_A 276 SVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTGL--------RQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHHH--------HHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhh
Confidence 566666664 78899999995 7888999999999999999999864 678877755
No 158
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.59 E-value=3.6e-15 Score=150.43 Aligned_cols=117 Identities=12% Similarity=0.014 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
....+|+++|.+|+|||||+++|+...-.. . +.+ ..+.+. .....+......+.||||||
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G 84 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------T--------YVP---TVFENY-TACLETEEQRVELSLWDTSG 84 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS--------S--------CCC---CSEEEE-EEEEEC--CEEEEEEEEECC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--------C--------cCC---eeeeeE-EEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999997532110 0 000 011111 11223344557899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhH-HHHH-HHHHHc--CCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVD-RQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt-~~~~-~~~~~~--~~p~iiviNK~D~~~ 206 (761)
+.+|......+++.+|++|+|+|+++...... ...| ..+... ++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99998888888999999999999998655444 3334 334433 789999999999853
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.58 E-value=4.4e-15 Score=155.83 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=78.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
-.||+++|++|+|||||+|+|+......... . . .......++++......+.+++ ..++||||||
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~---~-~---------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY---P-G---------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------------------CCCEEEEEEECC--CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC---C-C---------cccccCCceEEEEEEEEEecCCeEEEEEEEECCC
Confidence 4689999999999999999985322111100 0 0 0001124455555555555555 4899999999
Q ss_pred CCCc-------HHHH-------HHHHHh-------------cCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004316 150 HVDF-------TVEV-------ERALRV-------------LDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINK 201 (761)
Q Consensus 150 ~~~f-------~~~~-------~~al~~-------------aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviNK 201 (761)
+.++ ...+ ..+++. +|+++++++.. .+....+..+++.+.. ++|+|+|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 8443 2222 445554 77898888655 5888888888888877 8999999999
Q ss_pred CCCC
Q 004316 202 LDRM 205 (761)
Q Consensus 202 ~D~~ 205 (761)
+|+.
T Consensus 154 ~D~~ 157 (274)
T 3t5d_A 154 ADTL 157 (274)
T ss_dssp GGGS
T ss_pred cCCC
Confidence 9985
No 160
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.58 E-value=3.3e-15 Score=146.56 Aligned_cols=116 Identities=12% Similarity=-0.027 Sum_probs=78.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+++|++|+|||||+++|+...-.. . +.+. .+... .....+......+.||||||
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------~--------~~~t---~~~~~-~~~~~~~~~~~~~~i~Dt~G 64 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------N--------YVPT---VFENY-TASFEIDTQRIELSLWDTSG 64 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------CCCC---SEEEE-EEEEECSSCEEEEEEEEECC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CCCc---cceeE-EEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999997532100 0 0000 01111 11112223347899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~ 205 (761)
+.+|......+++.+|++|+|+|++.....+.. ..| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 999987777788999999999999876544443 333 33333 378999999999985
No 161
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.58 E-value=1.6e-14 Score=154.12 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=84.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee-cCeEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 151 (761)
.+|+++|.+|+|||||+++|+...... .....|.|+......+.+ ++..+.||||||+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~--------------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAF--------------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTG--------------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--------------------cccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 579999999999999999996421111 011245677666666664 57899999999999
Q ss_pred Cc-----HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH----HHH--cCCCEEEEEeCCCCCC
Q 004316 152 DF-----TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ----MRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 152 ~f-----~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~----~~~--~~~p~iiviNK~D~~~ 206 (761)
+| .......++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 88 4456677889999999999998766565544432 221 2899999999999864
No 162
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.57 E-value=3.1e-15 Score=149.89 Aligned_cols=116 Identities=12% Similarity=-0.024 Sum_probs=78.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
+...+|+++|.+|+|||||+++|+...-.. . +.+ ..+.+. .....++.....+.||||||
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------~--------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G 85 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------N--------YVP---TVFENY-TASFEIDTQRIELSLWDTSG 85 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------CCC---CSEEEE-EEEEESSSSEEEEEEEEECC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------cCC---ccceeE-EEEEEECCEEEEEEEEeCCC
Confidence 456789999999999999999997532110 0 000 001111 11112223347899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHH-HHH-HHHHH--cCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~~p~iiviNK~D~~ 205 (761)
+.+|......+++.+|++|+|+|++........ ..| ..+.. .++|+++|+||+|+.
T Consensus 86 ~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 86 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred cHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 999887777788999999999999876544433 333 33333 378999999999985
No 163
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=4.4e-15 Score=158.87 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=55.4
Q ss_pred cCeEEEEEeCCCCCC-------------cHHHHHHHHHhcCeEEEEEeC-CCCcchhH-HHHHHHHHHcCCCEEEEEeCC
Q 004316 138 KDYQINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCS-VGGVQSQS-ITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 138 ~~~~i~liDTPG~~~-------------f~~~~~~al~~aD~ailVvDa-~~g~~~qt-~~~~~~~~~~~~p~iiviNK~ 202 (761)
.+..++||||||+.+ |...+..+++.+|++|+|+|+ ..+...+. ..+++.+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 556678889999999999997 55655444 467777777899999999999
Q ss_pred CCCC
Q 004316 203 DRMG 206 (761)
Q Consensus 203 D~~~ 206 (761)
|+..
T Consensus 209 Dl~~ 212 (315)
T 1jwy_B 209 DLMD 212 (315)
T ss_dssp TSSC
T ss_pred ccCC
Confidence 9864
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.56 E-value=4.9e-15 Score=159.71 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=78.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG 149 (761)
.+.+|+++|.+|+|||||+++|+..... +. ++ ..+|.......+.+.+ ..+.||||||
T Consensus 157 ~la~V~lvG~~nvGKSTLln~L~~~~~~------i~---------~~------~ftTl~p~~g~v~~~~~~~~~l~DtPG 215 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLSVVSSAKPK------IA---------DY------HFTTLVPNLGMVETDDGRSFVMADLPG 215 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHHHSEEECCE------ES---------ST------TSSCCCCCEEEEECSSSCEEEEEEHHH
T ss_pred hcCeeeeeCCCCCCHHHHHHHHHcCCCc------cc---------cC------CccccCceEEEEEeCCCceEEEecCCC
Confidence 3568999999999999999999432110 11 11 2345555555566665 7899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCC---CcchhH-HHHHHHHHH-----cCCCEEEEEeCCCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVG---GVQSQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~---g~~~qt-~~~~~~~~~-----~~~p~iiviNK~D~~ 205 (761)
+.+ +.....+.+..+|++|+|+|++. ....+. ..++..+.. .++|+++|+||+|+.
T Consensus 216 ~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 216 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred CcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 743 44556667778999999999975 222222 334444544 378999999999985
No 165
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=4.6e-16 Score=155.41 Aligned_cols=117 Identities=15% Similarity=0.021 Sum_probs=79.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+++|++|+|||||+++|+...-.... . .+. +... .....+......+.||||||
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~-----~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G 87 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----I-----PTV----------FDNY-SANVMVDGKPVNLGLWDTAG 87 (204)
Confidence 35568999999999999999999642210000 0 000 0000 11112233446788999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (761)
+.+|......+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 9999988888999999999999998765544432 33 333333 789999999999853
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.54 E-value=1.7e-14 Score=152.94 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=84.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc----------c--------cccccCh--hhh------hh
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG----------V--------GAKMDSM--DLE------RE 123 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~----------~--------~~~~d~~--~~e------~~ 123 (761)
...++|+|+|.+|+|||||+|+|+.........+.+..... . ..+++.. ..+ +-
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999864322000000000000 0 0001111 000 00
Q ss_pred ----hcceeeeceEEEeec-CeEEEEEeCCCCC-------------CcHHHHHHHHHhcCeEE-EEEeCCCCcchhHH-H
Q 004316 124 ----KGITIQSAATSCAWK-DYQINIIDTPGHV-------------DFTVEVERALRVLDGAI-LVLCSVGGVQSQSI-T 183 (761)
Q Consensus 124 ----~giTi~~~~~~~~~~-~~~i~liDTPG~~-------------~f~~~~~~al~~aD~ai-lVvDa~~g~~~qt~-~ 183 (761)
.|++.......+... ...+.||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 233222222222222 4789999999974 34556677888888777 69999988777764 4
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCC
Q 004316 184 VDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 184 ~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+++.+...+.|+++|+||+|+..
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHHhCCCCCeEEEEEEccccCC
Confidence 66777667899999999999864
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.51 E-value=1.5e-13 Score=149.58 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=76.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
.++.|+|+|++|+|||||+|+|+.... ..+...+.|.+.....+.+++..+.++||||+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~---------------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ---------------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--------------------------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc---------------------cccCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence 466799999999999999999963211 00112456766666777888899999999998
Q ss_pred CCc--------HHHHHHHHHhcCeEEEEEeCCCCc--chhHHH-HHHHHHH---cCCCEEEEEeCCCCCCC
Q 004316 151 VDF--------TVEVERALRVLDGAILVLCSVGGV--QSQSIT-VDRQMRR---YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f--------~~~~~~al~~aD~ailVvDa~~g~--~~qt~~-~~~~~~~---~~~p~iiviNK~D~~~~ 207 (761)
.+- ...+...+..+|++++|+|++++. ...... +...+.. .++|+++|.||+|+...
T Consensus 237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 431 122344578899999999998764 222222 2223333 47899999999998643
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.51 E-value=6.1e-14 Score=150.66 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
....+|+++|.+|+|||||+++|+...-.- . + .+++.......+..++ ..+.||||
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~--------~--------~------~~t~~~~~~~~~~~~~~~~~~~l~Dt 210 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPG--------E--------Y------IPTVFDNYSANVMVDGKPVNLGLWDT 210 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCC--------S--------C------CCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCc--------c--------c------CCcccceeEEEEEECCEEEEEEEEeC
Confidence 455789999999999999999997432100 0 0 1111111122233344 45669999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHH-HH-HHHHHc--CCCEEEEEeCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRRY--EVPRLAFINKLDRMG 206 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~~p~iiviNK~D~~~ 206 (761)
||+.+|......+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 211 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 999999888888899999999999999865554442 23 334433 899999999999853
No 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3.8e-14 Score=142.67 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=72.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
....+|+++|.+|+|||||+++|+.....+.. ++ + ..|.+.... .+.+++ ..+.+|||
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~--------------~~-~---~~g~d~~~~--~i~~~~~~~~l~~~Dt 94 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DC-E---VLGEDTYER--TLMVDGESATIILLDM 94 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC--------------C-------CCTTEEEE--EEEETTEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------cC-C---ccceeeEEE--EEEECCeeeEEEEeec
Confidence 34578999999999999999999632221110 00 0 012222222 233344 46789999
Q ss_pred CCCCCc-HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 148 PGHVDF-TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f-~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
+|.... .......++.+|++|+|+|.++....+....| ..+.. .++|+|+|.||+|+.
T Consensus 95 ~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 998773 33333345779999999999875443333333 33332 378999999999984
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=1.1e-13 Score=150.88 Aligned_cols=114 Identities=22% Similarity=0.257 Sum_probs=76.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|++|+|||||+++|+... .. +.+ ..+.|.......+.+++..+.+|||||+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~---~~---~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 224 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK---PE---IAS---------------YPFTTRGINVGQFEDGYFRYQIIDTPGL 224 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC---CE---EEC---------------CTTCSSCEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---Cc---cCC---------------CCCeeeceeEEEEEecCceEEEEeCCCc
Confidence 56789999999999999999995321 11 111 0234444445556667889999999999
Q ss_pred CCcHH--------HHHHHH-HhcCeEEEEEeCCCCc--chhH-HHHHHHHHH-c-CCCEEEEEeCCCCC
Q 004316 151 VDFTV--------EVERAL-RVLDGAILVLCSVGGV--QSQS-ITVDRQMRR-Y-EVPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~--------~~~~al-~~aD~ailVvDa~~g~--~~qt-~~~~~~~~~-~-~~p~iiviNK~D~~ 205 (761)
.++.. ....++ ..+|++++|+|++.+. .... ...+..+.. . ++|+++|+||+|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 66421 222223 3589999999987643 3333 233333333 2 89999999999985
No 171
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.49 E-value=6.5e-14 Score=137.41 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=71.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEE---eecCeEEEEEeCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC---AWKDYQINIIDTPG 149 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDTPG 149 (761)
.+|+++|.+|+|||||+++|+....... +. + ....|+........+ ......+.+|||||
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~------~~--------~---~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G 65 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL------GM--------Q---SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG 65 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC----------------------------CSEEEEEEEC---------CEEEEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC------CC--------c---ceeccEEeEEeeeccccCCCCceEEEEEecCC
Confidence 3699999999999999999953210000 00 0 000122221111111 11456899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHHHH-HHHHH--cCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVD-RQMRR--YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~~~-~~~~~--~~~p~iiviNK~D~~~ 206 (761)
+.+|......+++.+|++++|+|.+++. .......| ..+.. .+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 66 REEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 9888777777889999999999998763 22222222 22222 3789999999999853
No 172
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.48 E-value=1.3e-13 Score=136.57 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
...+|+++|.+|+|||||+++|+.....+.. ++ + ..|.+.... .+.+++ ..+.+|||+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~--------------~~-~---~~~~~~~~~--~~~~~~~~~~l~~~Dt~ 64 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DX-E---VLGEDTYER--TLMVDGESATIILLDMW 64 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------------G---GGCTTEEEE--EEEETTEEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc--------------cc-c---ccceeEEEE--EEEECCeEEEEEEEEec
Confidence 3568999999999999999999754332211 00 0 012222222 233444 467889999
Q ss_pred CCCC-cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH----cCCCEEEEEeCCCCC
Q 004316 149 GHVD-FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~-f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~iiviNK~D~~ 205 (761)
|... +.......++.+|++|+|+|.++....+....| ..+.. .++|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 65 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp CC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred cCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 9865 222334567889999999999875443333333 22332 378999999999974
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=2.4e-13 Score=136.95 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=78.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+..+|+++|++|+|||||+++|+...-... .... ..+++. .+....+++|||||
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-------------~~~~-----~~~~~~-------~~~~~~~~l~Dt~G 64 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VVSQ-----EPLSAA-------DYDGSGVTLVDFPG 64 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-------------CCCS-----SCEEET-------TGGGSSCEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-------------eeec-----CceEEE-------EeeCceEEEEECCC
Confidence 4567899999999999999999975321100 0000 011111 11456899999999
Q ss_pred CCCcHHHHHHHHHh----cCeEEEEEeCC-C--CcchhHHHHHHHHHH------cCCCEEEEEeCCCCCCCCh
Q 004316 150 HVDFTVEVERALRV----LDGAILVLCSV-G--GVQSQSITVDRQMRR------YEVPRLAFINKLDRMGADP 209 (761)
Q Consensus 150 ~~~f~~~~~~al~~----aD~ailVvDa~-~--g~~~qt~~~~~~~~~------~~~p~iiviNK~D~~~~~~ 209 (761)
+.+|...+..+++. +|++|+|+|++ . ........+...... .++|+++|+||+|+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp CGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 99998888888887 99999999998 2 222222222222221 4899999999999986653
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.46 E-value=8.6e-14 Score=159.89 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=79.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeec--------eEEEeecCeE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA--------ATSCAWKDYQ 141 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~--------~~~~~~~~~~ 141 (761)
.+..+|+++|.+|+|||||+++|+...-. .. .. ...|.++... .......+..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~---~~---------------~t~g~~~~~~~~~~~~~v~~~~~~~~~~ 99 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PK---ES---------------QTHGLNVVTKQAPNIKGLENDDELKECL 99 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------------------------CCCEEEEEGGGSGGGTTCSTTTTCE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CC---CC---------------CccceEEEEeccccccceeecCCCceEE
Confidence 34568999999999999999999642210 00 00 0012222111 0011223578
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC--CCEEEEEeCCCCCC
Q 004316 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE--VPRLAFINKLDRMG 206 (761)
Q Consensus 142 i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--~p~iiviNK~D~~~ 206 (761)
+++|||||+..|.......++.+|++|+|+|++.. ......+..+...+ .|+|+|+||+|+..
T Consensus 100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 99999999999988888889999999999999875 34445556666654 99999999999854
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=5e-13 Score=139.14 Aligned_cols=115 Identities=15% Similarity=0.059 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|++|+|||||+++|+...... ..+ ..++|.......+.+++..++||||||+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~--------------~~~------~~~~t~~~~~~~~~~~~~~l~liDTpG~ 94 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR--------------VSP------FQAEGLRPVMVSRTMGGFTINIIDTPGL 94 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC--------------CCS------SCC-CCCCEEEEEEETTEEEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc--------------cCC------CCCcceeeEEEEEEECCeeEEEEECCCC
Confidence 46789999999999999999997533211 111 1455666777778889999999999999
Q ss_pred CCcHHHH---HHHHH------hcCeEEEEEeCCCC-cchhHHHHHHHHHHc-C----CCEEEEEeCCCCC
Q 004316 151 VDFTVEV---ERALR------VLDGAILVLCSVGG-VQSQSITVDRQMRRY-E----VPRLAFINKLDRM 205 (761)
Q Consensus 151 ~~f~~~~---~~al~------~aD~ailVvDa~~g-~~~qt~~~~~~~~~~-~----~p~iiviNK~D~~ 205 (761)
.+|.... .+.+. .+|++|+|+|.+.. ........++.+... + .|+++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 95 VEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 8874332 22232 78999999887643 334444555555442 2 4899999999985
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.43 E-value=9e-13 Score=131.80 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=74.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
.+-.+|+++|++|+|||||+++|+.... ... + ....|.|.... .+.+.+ .+.++||||
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~---~---------------~~~~G~~~~~~--~~~~~~-~~~l~Dt~G 81 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKS-LAR---T---------------SKTPGRTQLIN--LFEVAD-GKRLVDLPG 81 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------------------------CCEE--EEEEET-TEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-ccc---c---------------cCCCccceeeE--EEEecC-CEEEEECcC
Confidence 3456899999999999999999942110 000 0 01134444322 233334 688999999
Q ss_pred CCCc----------HHHHHHHH---HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HVDF----------TVEVERAL---RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f----------~~~~~~al---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.+. ...+...+ +.+|++++|+|+..+.......+...+...++|.+++.||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 8542 22222333 47899999999998877666667777778899999999999975
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.43 E-value=2.3e-13 Score=135.32 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=77.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (761)
...+|+++|+.|+|||||+++|+....... ....++.......+.+++ ..+.+||||
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~---------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------------SKSTIGVEFATRSIQVDGKTIKAQIWDTA 62 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCCSCEEEEEEEEETTEEEEEEEEECS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCccceeEEEEEEEECCEEEEEEEEECC
Confidence 356899999999999999999975321110 001111222223344444 567899999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 149 G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
|+.+|.......++.+|++++|+|+......+....| ..+.. .+.|+++++||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9998877677778899999999999876544333233 22322 468899999999984
No 178
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.41 E-value=2.9e-13 Score=147.34 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcc---cccccChh---hhhhhcceeeeceE-------
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMD---LEREKGITIQSAAT------- 133 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~---~~~~d~~~---~e~~~giTi~~~~~------- 133 (761)
.+.+.|+|+|++|+|||||+++|.... |.-...-..+..... ....|... .....+..+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 467899999999999999999997542 211111111111000 00000000 00011222211111
Q ss_pred ---------EEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 134 ---------SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 134 ---------~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
.+.+.++.+.||||||... .....+..+|++|+|+|+..+...+... ....++|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCC
Confidence 1244678999999999654 2334468999999999998765443322 11134699999999998
Q ss_pred C
Q 004316 205 M 205 (761)
Q Consensus 205 ~ 205 (761)
.
T Consensus 230 ~ 230 (355)
T 3p32_A 230 E 230 (355)
T ss_dssp G
T ss_pred c
Confidence 4
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.40 E-value=4.6e-13 Score=135.19 Aligned_cols=127 Identities=22% Similarity=0.256 Sum_probs=74.6
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceE----EE---------
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT----SC--------- 135 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~----~~--------- 135 (761)
..++++|+++|++|+|||||+++|+.......+.+.+..... . ..|....+ ..|+++..... .+
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~-~-~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV-S-KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRL 103 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC-C-HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC-C-chhHHHHH-hCCCcEEEecCCceeecccHHHHHHH
Confidence 346889999999999999999999976433223332322211 0 01111111 11333211110 11
Q ss_pred -eecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 136 -AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 136 -~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+.+..+.+|||||+.+-.... -...+.+++|+|+..+... .+......++|.++|+||+|+.
T Consensus 104 ~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 104 KKFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GGGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 3456889999999952111000 0246889999999887432 2333444578999999999973
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.40 E-value=2.7e-12 Score=134.20 Aligned_cols=117 Identities=14% Similarity=0.076 Sum_probs=81.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
...+|+++|++|+|||||+|+|+...... +. + ..++|.......+.+++..++||||||+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~-----~~---------~------~~~~t~~~~~~~~~~~~~~l~iiDTpG~ 97 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS-----IS---------P------FQSEGPRPVMVSRSRAGFTLNIIDTPGL 97 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC-----CC---------S------SSCCCSSCEEEEEEETTEEEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc-----cc---------C------CCCcceeeEEEEEeeCCeEEEEEECCCC
Confidence 45789999999999999999997432111 00 0 1345555555667788999999999999
Q ss_pred CCcH---HHHHHHHH------hcCeEEEEEeCCC-CcchhHHHHHHHHHHc-C----CCEEEEEeCCCCCCC
Q 004316 151 VDFT---VEVERALR------VLDGAILVLCSVG-GVQSQSITVDRQMRRY-E----VPRLAFINKLDRMGA 207 (761)
Q Consensus 151 ~~f~---~~~~~al~------~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-~----~p~iiviNK~D~~~~ 207 (761)
.+|. ......+. .+|++|+|+|++. .........+..+... + +|+++|+||+|+...
T Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 98 IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 7764 23333332 6999999988754 3444455555555432 3 689999999999643
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=8.7e-13 Score=143.64 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (761)
..+|+|+|++|+|||||+++|+...... .+ .......+..+++++......+.+.+ ..+++|||||
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~-------~~-----~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG 104 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYP-------ER-----VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------------------CEEEEEEEEC----CEEEEEEEEC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCC-------CC-----cccCCCcccCCceeEEEEEEEeecCCcccceEEEEecc
Confidence 4689999999999999999985321110 00 01111111223344433333334444 3799999999
Q ss_pred CCCc-------HHHHH-------HHHHhc-------------CeEEEEEeC-CCCcchhHHHHHHHHHHcCCCEEEEEeC
Q 004316 150 HVDF-------TVEVE-------RALRVL-------------DGAILVLCS-VGGVQSQSITVDRQMRRYEVPRLAFINK 201 (761)
Q Consensus 150 ~~~f-------~~~~~-------~al~~a-------------D~ailVvDa-~~g~~~qt~~~~~~~~~~~~p~iiviNK 201 (761)
+.++ ...+. .+++.+ |+++++|+. ..+.......+++.+ ..++|+|+|+||
T Consensus 105 ~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK 183 (361)
T 2qag_A 105 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAK 183 (361)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEEC
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEEC
Confidence 9443 22222 455544 357777776 566666665555544 367999999999
Q ss_pred CCCCC
Q 004316 202 LDRMG 206 (761)
Q Consensus 202 ~D~~~ 206 (761)
+|+..
T Consensus 184 ~Dl~~ 188 (361)
T 2qag_A 184 ADTLT 188 (361)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 99853
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.4e-13 Score=130.04 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (761)
....+|+++|+.|+|||||+++|+...-... .. ....+++. .+.+..+.||||||
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-------------~~-----~~~~~~~~-------~~~~~~~~l~Dt~G 100 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VV-----SQEPLSAA-------DYDGSGVTLVDFPG 100 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------------------CCCCTTCSEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-------------cc-----cCCCceee-------eecCCeEEEEECCC
Confidence 4567899999999999999999975321100 00 00011111 12567899999999
Q ss_pred CCCcHHHHHHHHHh----cCeEEEEEeCC-CCcchhH-HHHHHHHHH-------cCCCEEEEEeCCCCCCCC-hHHHHHH
Q 004316 150 HVDFTVEVERALRV----LDGAILVLCSV-GGVQSQS-ITVDRQMRR-------YEVPRLAFINKLDRMGAD-PWKVLDQ 215 (761)
Q Consensus 150 ~~~f~~~~~~al~~----aD~ailVvDa~-~g~~~qt-~~~~~~~~~-------~~~p~iiviNK~D~~~~~-~~~~~~~ 215 (761)
+.+|...+...++. +|++|+|+|++ ....... ...+..... .++|+++|+||+|+.... ..+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp CCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred CchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 99887666666665 89999999998 3211111 112222211 389999999999997654 4455555
Q ss_pred HHHHh
Q 004316 216 ARSKL 220 (761)
Q Consensus 216 i~~~l 220 (761)
+.+.+
T Consensus 181 l~~~l 185 (193)
T 2ged_A 181 LESEI 185 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.36 E-value=2.8e-12 Score=151.13 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=54.6
Q ss_pred eEEEEEeCCCCCC---cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHH-HHHHcCCCEEEEEeCCCCC
Q 004316 140 YQINIIDTPGHVD---FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~---f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~~~p~iiviNK~D~~ 205 (761)
..++||||||+.+ +...+..+++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999755 4556678889999999999999988877777775 4455688999999999984
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=2e-13 Score=150.15 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=45.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEE------------------
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC------------------ 135 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~------------------ 135 (761)
+|+|+|++|+|||||+|+|+... .. +.+. .++|+.......
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~-----~~~~---------------p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~ 60 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VE-----IANY---------------PFTTIEANVGVTYAITDHPCKELGCSPNPQ 60 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEEECSCSSSCCSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Cc-----ccCC---------------CCcccCCceEEEeeccCCchHHhhhhcccc
Confidence 69999999999999999997543 11 0000 122222222111
Q ss_pred ---e---ecCeEEEEEeCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCCC
Q 004316 136 ---A---WKDYQINIIDTPGHVDFTV-------EVERALRVLDGAILVLCSVGG 176 (761)
Q Consensus 136 ---~---~~~~~i~liDTPG~~~f~~-------~~~~al~~aD~ailVvDa~~g 176 (761)
. +....+.||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 61 ~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp SSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 0 1235799999999975321 112346899999999999875
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.36 E-value=1.3e-12 Score=129.00 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
+...+|+|+|+.|+|||||+++|+....... ....++.......+.+++ ..+.+|||
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~---------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt 85 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------------SKSTIGVEFATRSIQVDGKTIKAQIWDT 85 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS---------------------CCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCccceEEEEEEEEECCEEEEEEEEEC
Confidence 3467899999999999999999975321110 001122222233444555 45667999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH-HHHHH---cCCCEEEEEeCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~~p~iiviNK~D~~ 205 (761)
||+.+|...+...++.+|++++|+|.......+....| ..+.. .+.|+++++||+|+.
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99998887777888899999999998875433322222 22222 367899999999974
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.34 E-value=8.2e-13 Score=143.66 Aligned_cols=137 Identities=18% Similarity=0.129 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc----------cc--------ccccCh--hhh------hh
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG----------VG--------AKMDSM--DLE------RE 123 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~----------~~--------~~~d~~--~~e------~~ 123 (761)
...++|+|+|.+|+|||||+|+|+...-.-...+.+..... .. .+++.. ..+ +-
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999753321000000000000 00 001111 111 11
Q ss_pred ----hcceeeeceEEEeec-CeEEEEEeCCCCCC-------------cHHHHHHHHHhcC-eEEEEEeCCCCcchhHH-H
Q 004316 124 ----KGITIQSAATSCAWK-DYQINIIDTPGHVD-------------FTVEVERALRVLD-GAILVLCSVGGVQSQSI-T 183 (761)
Q Consensus 124 ----~giTi~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~al~~aD-~ailVvDa~~g~~~qt~-~ 183 (761)
.|+........+... ...++||||||..+ +...+..+++.++ ++++|+|+..+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 344333322333333 47899999999743 3344556665554 55667788877766665 3
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCC
Q 004316 184 VDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 184 ~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+++.+...+.|+++|+||+|+..
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSC
T ss_pred HHHHhCcCCCceEEEeccccccC
Confidence 66777777899999999999864
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.32 E-value=4.1e-12 Score=145.56 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=87.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcce------------------eee
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT------------------IQS 130 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giT------------------i~~ 130 (761)
.+..++|+|+|++|+|||||+|+|+...-.....+..........+......+...|.+ ...
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 35678999999999999999999986542200000000000000000000000000000 001
Q ss_pred ceEEEeecC---eEEEEEeCCCCCC-----------cHHHHHHHHHhcCeEEEEEeCCC-CcchhHHHHHHHHHHcCCCE
Q 004316 131 AATSCAWKD---YQINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCSVG-GVQSQSITVDRQMRRYEVPR 195 (761)
Q Consensus 131 ~~~~~~~~~---~~i~liDTPG~~~-----------f~~~~~~al~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ 195 (761)
....+.+.+ ..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..++..+...+.|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 111222222 4799999999976 77788889999999999999988 57788888888888888999
Q ss_pred EEEEeCCCCCC
Q 004316 196 LAFINKLDRMG 206 (761)
Q Consensus 196 iiviNK~D~~~ 206 (761)
++|+||+|+..
T Consensus 222 ilVlNK~Dl~~ 232 (550)
T 2qpt_A 222 RVVLNKADMVE 232 (550)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEECCCccC
Confidence 99999999974
No 188
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.32 E-value=1.3e-11 Score=130.89 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~f 153 (761)
+|+++|..|+|||||++++... ... . ....-+.|+......+. ...+++||||||+.+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~--~~~-------~-----------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN--MQP-------L-----------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC--CCS-------G-----------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcC--CCC-------C-----------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhc
Confidence 4889999999999999876321 100 0 00001233333333332 3478999999999999
Q ss_pred HH---HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHH----HHH--cCCCEEEEEeCCCCCCC
Q 004316 154 TV---EVERALRVLDGAILVLCSVGGVQSQSITVDRQ----MRR--YEVPRLAFINKLDRMGA 207 (761)
Q Consensus 154 ~~---~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~----~~~--~~~p~iiviNK~D~~~~ 207 (761)
.. ....+++.++++|+|+|+++. .......|.. +.. .++|+++|.||+|+...
T Consensus 60 ~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 60 FEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred cchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 63 467889999999999999986 4444444432 222 47899999999999643
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=8.3e-12 Score=137.65 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=73.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPG 149 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG 149 (761)
....|+|+|++|||||||+++|+. .... +.+. ...|.......+.+.+ ..++++||||
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg---~~~~---i~~~---------------~ftTl~p~~G~V~~~~~~~~~l~DtpG 214 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTR---AHPK---IAPY---------------PFTTLSPNLGVVEVSEEERFTLADIPG 214 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCS---SCCE---ECCC---------------TTCSSCCEEEEEECSSSCEEEEEECCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHc---CCcc---ccCc---------------ccceecceeeEEEecCcceEEEEeccc
Confidence 456799999999999999999943 2111 1111 1223333444455554 7899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH-----cCCCEEEEEeCCCCCC
Q 004316 150 HVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~-------f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~iiviNK~D~~~ 206 (761)
+.+ +.....+.+..+|.++.|+|+......+....+++... .+.|.++++||+|+..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 854 22334455667999999999972111112222233322 3689999999999853
No 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=136.14 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred hcCeEEEEEeCCCC--cchhHHHHH-HHH----HHcCCCEEEEEeCCCCC
Q 004316 163 VLDGAILVLCSVGG--VQSQSITVD-RQM----RRYEVPRLAFINKLDRM 205 (761)
Q Consensus 163 ~aD~ailVvDa~~g--~~~qt~~~~-~~~----~~~~~p~iiviNK~D~~ 205 (761)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 343333222 222 23579999999999984
No 191
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.2e-11 Score=130.88 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=94.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
..-+|+|+|.||+|||||+|+|...... +.++ .++|++.....+.+.+.++.|+||||.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~---------------v~~~------pftT~~~~~g~~~~~~~~i~l~D~pGl 129 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESE---------------AAEY------EFTTLVTVPGVIRYKGAKIQMLDLPGI 129 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCC---------------GGGT------CSSCCCEEEEEEEETTEEEEEEECGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCc---------------ccCC------CCceeeeeeEEEEeCCcEEEEEeCCCc
Confidence 3457999999999999999999532111 1111 678898888899999999999999998
Q ss_pred CCc-------HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc-----CCCEEEEEeCCCCCCCC----------
Q 004316 151 VDF-------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-----EVPRLAFINKLDRMGAD---------- 208 (761)
Q Consensus 151 ~~f-------~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~iiviNK~D~~~~~---------- 208 (761)
.+- ...+...++.||++++|+|+.+++. +-..+...+... ..|.++++||+|..+.+
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l 208 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHL 208 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSC
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhc
Confidence 542 3456778899999999999987542 222233333332 56889999999985421
Q ss_pred hHHHHHHHHHHhCCceee
Q 004316 209 PWKVLDQARSKLRHHCAA 226 (761)
Q Consensus 209 ~~~~~~~i~~~l~~~~~~ 226 (761)
..+.+..+...+.....+
T Consensus 209 ~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 209 GNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp CHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHHHHHHhcccCCC
Confidence 124455555555544443
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=4.5e-12 Score=148.23 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=84.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcC------Ccee-eeee---ccCCcc--------cccccChhh------h--h-
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTG------RIHE-IHEV---RGRDGV--------GAKMDSMDL------E--R- 122 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g------~i~~-~~~v---~~~~~~--------~~~~d~~~~------e--~- 122 (761)
-.++.|+|+|..++|||||+|+|+...- ..++ ...+ ...... ..+.+..+. + .
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3578999999999999999999985321 1110 0000 000000 001111110 0 0
Q ss_pred ---hhcceeeeceEEEeec-CeEEEEEeCCCCCC-------------cHHHHHHHH-HhcCeEEEEEeCCCCcchhHH-H
Q 004316 123 ---EKGITIQSAATSCAWK-DYQINIIDTPGHVD-------------FTVEVERAL-RVLDGAILVLCSVGGVQSQSI-T 183 (761)
Q Consensus 123 ---~~giTi~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~al-~~aD~ailVvDa~~g~~~qt~-~ 183 (761)
..|++-......+.+. ...+.||||||... +...+..++ ..+|++++|+|+..+...+.. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 1233333333333332 35799999999754 222334444 478999999999998877776 6
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCC
Q 004316 184 VDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 184 ~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+++.+...+.|+|+|+||+|+..
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSC
T ss_pred HHHHHHhcCCCEEEEEeCcccCC
Confidence 88888888999999999999864
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=131.06 Aligned_cols=62 Identities=27% Similarity=0.281 Sum_probs=39.5
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.++.+.|+||||...-. ......+|++++|+|+..+...+... . .....|.++|+||+|+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 467899999999974322 23457899999999998764333211 1 12467899999999984
No 194
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.20 E-value=2.8e-11 Score=136.25 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=83.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChh-hhhhhcceeeece-------------EE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------TS 134 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~~ 134 (761)
.+.++|+|+|++|+||||++++|++..... .+..-++.........++.. .....++++.... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543211 11111221100011111111 1122344432211 11
Q ss_pred EeecCeEEEEEeCCCCCC----cHHHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCC
Q 004316 135 CAWKDYQINIIDTPGHVD----FTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA 207 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~~----f~~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~ 207 (761)
+.|.++.+.||||||... +..++....+ .+|.+++|+|+..|.. ....++.... .+|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 234788999999999863 3444433322 7899999999998753 3333333332 2785 89999999863
Q ss_pred ChHHHHHHHHHHhCCc
Q 004316 208 DPWKVLDQARSKLRHH 223 (761)
Q Consensus 208 ~~~~~~~~i~~~l~~~ 223 (761)
.....++ +...++.+
T Consensus 255 ~~g~~l~-~~~~~g~P 269 (504)
T 2j37_W 255 KGGGALS-AVAATKSP 269 (504)
T ss_dssp CCTHHHH-HHHHHCCC
T ss_pred chHHHHH-HHHHhCCC
Confidence 3233333 55566644
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=6.3e-11 Score=122.77 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=46.0
Q ss_pred CeEEEEEeCCCCCCcHHH------HHHHHHhcCeEEEEEeCCCCcchhHHH-H----HHHHHHcCCCEEEEEeCCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVE------VERALRVLDGAILVLCSVGGVQSQSIT-V----DRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~------~~~al~~aD~ailVvDa~~g~~~qt~~-~----~~~~~~~~~p~iiviNK~D~~~ 206 (761)
++.+.||||||..++... +..++.. +++|+|+|+.......... . .......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 368999999999776432 2234555 8889999987665544432 1 1223445899999999999853
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.14 E-value=1.6e-10 Score=125.79 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=52.6
Q ss_pred CeEEEEEeCCCCCCc-------------HHHHHHHHHhcCeEEEEEeCCC-Cc-chhHHHHHHHHHHcCCCEEEEEeCCC
Q 004316 139 DYQINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCSVG-GV-QSQSITVDRQMRRYEVPRLAFINKLD 203 (761)
Q Consensus 139 ~~~i~liDTPG~~~f-------------~~~~~~al~~aD~ailVvDa~~-g~-~~qt~~~~~~~~~~~~p~iiviNK~D 203 (761)
...+.||||||..++ ...+..+++.+|++|+|+|+.. .. ......+++.+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 468999999999887 5667788999999999998743 22 23334555555567889999999999
Q ss_pred CCC
Q 004316 204 RMG 206 (761)
Q Consensus 204 ~~~ 206 (761)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 964
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=1e-09 Score=118.36 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=55.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec---------------
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------------- 138 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------------- 138 (761)
+|+|+|.+|+|||||+|+|+.....+.. ..++|+......+.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~~v~~---------------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~ 62 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGIEAAN---------------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccC---------------------CCCceECceEEEEecCCcccceeeeeecccc
Confidence 6999999999999999999754311100 0222333322223332
Q ss_pred --CeEEEEEeCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 004316 139 --DYQINIIDTPGHVDFTV-------EVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 139 --~~~i~liDTPG~~~f~~-------~~~~al~~aD~ailVvDa~~ 175 (761)
...+.||||||+.++.. .....++.+|++++|+|+.+
T Consensus 63 ~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 25799999999988753 24567899999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=3e-10 Score=122.36 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=40.0
Q ss_pred eecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 136 AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 136 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..++.++++||+|+.
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 34688999999999865322 23478999999999865532111 00001 134678889999974
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.97 E-value=2.6e-08 Score=107.98 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=55.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe----------------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA---------------- 136 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 136 (761)
.+|+|+|.+|+|||||+++|+.....+.. - .+.|+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~------~---------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN------Y---------------PFATIDKNVGVVPLEDERLYALQRTFAKG 60 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS------C---------------CGGGGSTTEEEEECCCHHHHHHHHHHCBT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC------C---------------CCceeccceeeEecChHHHHHHHHHhccc
Confidence 36999999999999999999865311111 0 0111111111111
Q ss_pred -----ecCeEEEEEeCCCCCCc-------HHHHHHHHHhcCeEEEEEeCCC
Q 004316 137 -----WKDYQINIIDTPGHVDF-------TVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 137 -----~~~~~i~liDTPG~~~f-------~~~~~~al~~aD~ailVvDa~~ 175 (761)
+.+..+.||||||+.++ .......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23467999999999765 2456678899999999999985
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.91 E-value=2.3e-09 Score=113.58 Aligned_cols=120 Identities=18% Similarity=0.291 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEee--cCeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--KDYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 150 (761)
.+|+++|+.|+|||||+++|+... .....+ +... ..+ ...++........+.. ....+++|||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~~~--------g~~--~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD-LYPERV-ISGA--------AEK--IERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-ccCCCC-cccC--------Ccc--cCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 478999999999999999985321 110101 1000 000 0001111111111111 2357899999998
Q ss_pred -------CCcHHHHH-------HHHHhc-------------CeEEEEEeCCC-CcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 151 -------VDFTVEVE-------RALRVL-------------DGAILVLCSVG-GVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 151 -------~~f~~~~~-------~al~~a-------------D~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
..|...+. ..++.+ ++++++++++. +........++.+. .++|+++|+||.
T Consensus 87 ~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~ 165 (301)
T 2qnr_A 87 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKA 165 (301)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCG
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeC
Confidence 34433332 444443 33666666544 57777665555543 467999999999
Q ss_pred CCC
Q 004316 203 DRM 205 (761)
Q Consensus 203 D~~ 205 (761)
|+.
T Consensus 166 Dl~ 168 (301)
T 2qnr_A 166 DTL 168 (301)
T ss_dssp GGS
T ss_pred CCC
Confidence 985
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.90 E-value=3.7e-09 Score=106.72 Aligned_cols=127 Identities=19% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh--hcceeeece-------------EE
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGITIQSAA-------------TS 134 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~--~giTi~~~~-------------~~ 134 (761)
.+.++|+|+|++|+|||||+++|+.......+...+..... ...|....+.. ..+.+.... ..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI--AKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT--THHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC--CCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHH
Confidence 46899999999999999999999976432222211211100 00111111000 000010000 00
Q ss_pred EeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 135 CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+...+..+.++||+|...-... .-...+..+.|+|+..+...... .....+.|.++|+||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 0112347999999995321100 01234667888887554322211 1222478999999999973
No 202
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.89 E-value=1.3e-08 Score=112.80 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=117.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc--eeeeeeccCCcccccccChh-hhhhhcceeeece-------------E
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI--HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------T 133 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i--~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~ 133 (761)
.+.+.|+++|+.|+||||++..|.+..... .+..-++.........+... .....|+.+.... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 357899999999999999999997533211 01111111100011111100 0112344332211 0
Q ss_pred EEeecCeEEEEEeCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004316 134 SCAWKDYQINIIDTPGHVDFTVEVERA------LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (761)
Q Consensus 134 ~~~~~~~~i~liDTPG~~~f~~~~~~a------l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (761)
.+.+.++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+.. ..++++ -+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEecCCCCc
Confidence 112357899999999987664444333 336789999999987632 22222221 223563 57999999752
Q ss_pred CChHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHHHHHH--HHHHHHHHh
Q 004316 207 ADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEK--RRELIELVS 284 (761)
Q Consensus 207 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~--~~~l~e~~~ 284 (761)
... ....+...++.+... ++.+.. +.|+ ..|+ |..+.+.+... ...|+|.+.
T Consensus 255 -~~g-~~l~i~~~~~~Pi~~----iG~ge~---v~dl-----~~f~------------p~~~a~~l~g~gD~~~Lie~a~ 308 (433)
T 2xxa_A 255 -RGG-AALSIRHITGKPIKF----LGVGEK---TEAL-----EPFH------------PDRIASRILGMGDVLSLIEDIE 308 (433)
T ss_dssp -CCT-HHHHHHHHHCCCEEE----EECSSS---SSCE-----EECC------------HHHHHHHHHCCCTTHHHHHHHH
T ss_pred -cHH-HHHHHHHHHCCCeEE----EecCCC---chhh-----hhcC------------hHHHHHHHhCccchHHHHHHHH
Confidence 222 333566666544322 111111 1111 1111 12222222221 222333322
Q ss_pred -----cCCHHHHHHHhcCCCCChhHHHHHHHHHHhcCccee
Q 004316 285 -----EVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIP 320 (761)
Q Consensus 285 -----~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~P 320 (761)
+.+++++++|+++.+++.+++.+.+++...++.+-|
T Consensus 309 ~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~ 349 (433)
T 2xxa_A 309 SKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMAS 349 (433)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHH
T ss_pred HhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchh
Confidence 336788999998878999999999998776665433
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=5.1e-09 Score=115.44 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--CeEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 150 (761)
.+|+|+|+.|+|||||+++|+....... + .++ . ..+. ...+.+......+... ...+++|||||+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~--~--~~~---~-~~~~-----~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSP--E--YPG---P-SHRI-----KKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCC--C--CCS---C-C----------CCEEEEEECC------CEEEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCC--C--CCC---c-ccCC-----ccceeeeeEEEEEecCCcccceeeeechhh
Confidence 4689999999999999999953211100 0 001 0 0000 0011111111111111 247899999999
Q ss_pred CCcHH------HH--------HHHH-----------Hh--cCeEEEEEeCC-CCcchhHHHHHHHHHHcCCCEEEEEeCC
Q 004316 151 VDFTV------EV--------ERAL-----------RV--LDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (761)
Q Consensus 151 ~~f~~------~~--------~~al-----------~~--aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~iiviNK~ 202 (761)
.++.. .+ ..++ +. +|++|++++++ .+....+..+++.+. .++|+|+|+||+
T Consensus 99 ~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVinK~ 177 (418)
T 2qag_C 99 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIAKA 177 (418)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEEST
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEEcc
Confidence 76531 11 1111 12 34566777766 688877776666665 489999999999
Q ss_pred CCC
Q 004316 203 DRM 205 (761)
Q Consensus 203 D~~ 205 (761)
|+.
T Consensus 178 Dll 180 (418)
T 2qag_C 178 DTL 180 (418)
T ss_dssp TSS
T ss_pred cCc
Confidence 985
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.80 E-value=5.5e-08 Score=107.32 Aligned_cols=218 Identities=15% Similarity=0.111 Sum_probs=105.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChhh-hhhhcceeeece-------------E
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAA-------------T 133 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~-------------~ 133 (761)
+.+.|+++|++|+||||++..|...- |.-.-.-..+.. .....+.... ....|+.+.... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~--r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY--RPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS--CHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc--chhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 45789999999999999999986422 211000000000 0000000000 011122221110 1
Q ss_pred EEeecCeEEEEEeCCCCCC------cHHHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 134 SCAWKDYQINIIDTPGHVD------FTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 134 ~~~~~~~~i~liDTPG~~~------f~~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+.+.++.+.||||||... +..++....+ ..|.+++|+|+..|... ....+.....--+..+++||+|..
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 1223578999999999754 4444443333 35999999999886332 223333333334578999999986
Q ss_pred CCChHHHHHHHHHHhCCceeeeeecCCCcCccccceecccceeEEeeCCCCCeEEecCCChhhHHH------HHHHHHHH
Q 004316 206 GADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETF------VAEKRREL 279 (761)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~idl~~~~~~~~~~~~g~~~~~~~i~~~~~~~------~~~~~~~l 279 (761)
+.....+. +....+.+...+ +.+.+ +-| .....|+.+... +...++++
T Consensus 252 -a~~G~als-~~~~~g~Pi~fi----g~Ge~---v~d-----------------L~~f~p~~~~~~llg~gd~~~l~e~~ 305 (433)
T 3kl4_A 252 -AKGGGALS-AVVATGATIKFI----GTGEK---IDE-----------------LETFNAKRFVSRILGMGDIESILEKV 305 (433)
T ss_dssp -SCHHHHHH-HHHHHTCEEEEE----ECCSS---SSC-----------------EEECCHHHHHHHHHCSSHHHHHHHHH
T ss_pred -ccchHHHH-HHHHHCCCEEEE----ECCCC---hHh-----------------CccCCHHHHHHHhcCCchHHHHHHHH
Confidence 33333333 333444432211 11111 100 112235566663 34555666
Q ss_pred HHHHhcCC-HHHHHHHhcCC-CCChhHHHHHHHHHHhcCcc
Q 004316 280 IELVSEVD-DKLGDMFLSDE-PISSGDLEEAIRRATVARKF 318 (761)
Q Consensus 280 ~e~~~~~d-d~l~e~~l~~~-~~~~~~l~~~l~~~~~~~~~ 318 (761)
.+.+.+.+ ++++++|.+++ +++-+++.+.++....++.+
T Consensus 306 ~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~ 346 (433)
T 3kl4_A 306 KGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPL 346 (433)
T ss_dssp HHC-------------------CCHHHHHHHHHHHHHCCSS
T ss_pred HHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCH
Confidence 66665554 67899999887 89999999999987777653
No 205
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.67 E-value=4.1e-08 Score=108.84 Aligned_cols=149 Identities=18% Similarity=0.121 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChhhh-hhhcceeeece------------EEEe
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAA------------TSCA 136 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~e-~~~giTi~~~~------------~~~~ 136 (761)
+.++|+++|++|+||||+++.|......- .+..-++.........+....- ...|+.+.... ..-.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999997542100 0000011110000111111110 11122111110 0001
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHHH------HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCC-C-EEEEEeCCCCCCCC
Q 004316 137 WKDYQINIIDTPGHVDFTVEVERAL------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-P-RLAFINKLDRMGAD 208 (761)
Q Consensus 137 ~~~~~i~liDTPG~~~f~~~~~~al------~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~-p-~iiviNK~D~~~~~ 208 (761)
+.++.+.||||||...........+ ..+|.+++|+|+..|. ......+. ....+ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCcc-c
Confidence 2578999999999876533333222 2579999999998874 22222222 22346 7 789999999853 2
Q ss_pred hHHHHHHHHHHhCCce
Q 004316 209 PWKVLDQARSKLRHHC 224 (761)
Q Consensus 209 ~~~~~~~i~~~l~~~~ 224 (761)
....+ .+...++.+.
T Consensus 254 ~g~~l-~~~~~~~~pi 268 (432)
T 2v3c_C 254 GGGAL-SAVAETKAPI 268 (432)
T ss_dssp THHHH-HHHHHSSCCE
T ss_pred hHHHH-HHHHHHCCCE
Confidence 23333 3666666543
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.64 E-value=2.4e-09 Score=116.67 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=82.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
++|+++|.+|+|||||+|+|+...........+.. .+|+|.......+ . ..+.++||||..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~---------------~~gtT~~~~~~~~--~-~~~~liDtPG~~~ 224 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY---------------FPGTTLDMIEIPL--E-SGATLYDTPGIIN 224 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE---------------CTTSSCEEEEEEC--S-TTCEEEECCSCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecC---------------CCCeEEeeEEEEe--C-CCeEEEeCCCcCc
Confidence 58999999999999999999865210000000111 1466665544332 2 2489999999854
Q ss_pred cH-------HHHHHHH---HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCC-ChHHHHHHHHHHhC
Q 004316 153 FT-------VEVERAL---RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-DPWKVLDQARSKLR 221 (761)
Q Consensus 153 f~-------~~~~~al---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l~ 221 (761)
.. .+....+ +..|.+++++|+...........+.++...++|+++++||+|.... ..++..+.+.+.+|
T Consensus 225 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 225 HHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp CSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred HHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence 32 1223334 6789999999995432211111133334457899999999998643 34566777777877
Q ss_pred Cc
Q 004316 222 HH 223 (761)
Q Consensus 222 ~~ 223 (761)
..
T Consensus 305 ~~ 306 (369)
T 3ec1_A 305 EL 306 (369)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=6.5e-09 Score=113.22 Aligned_cols=133 Identities=9% Similarity=0.050 Sum_probs=79.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
++|+++|.+|+|||||+|+|+...... .....+.. .+|+|.......+.. .+.++||||..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~---------------~~gtT~~~~~~~~~~---~~~liDtPG~~ 222 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH---------------FPGTTLDLIDIPLDE---ESSLYDTPGII 222 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC---------------CC----CEEEEESSS---SCEEEECCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCC---------------CCCeecceEEEEecC---CeEEEeCCCcC
Confidence 579999999999999999998653111 11100111 156666554433322 38999999985
Q ss_pred CcH-------HHHHHH---HHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCCCC-hHHHHHHHHHHh
Q 004316 152 DFT-------VEVERA---LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD-PWKVLDQARSKL 220 (761)
Q Consensus 152 ~f~-------~~~~~a---l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l 220 (761)
+.. .+.... ....+.+++++|+...........+.++...++|+++++||+|..... .++..+.+.+.+
T Consensus 223 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 223 NHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp CTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred cHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 432 222222 256789999999854322222111233344578999999999986543 456677777777
Q ss_pred CCc
Q 004316 221 RHH 223 (761)
Q Consensus 221 ~~~ 223 (761)
|..
T Consensus 303 g~~ 305 (368)
T 3h2y_A 303 GDL 305 (368)
T ss_dssp TTT
T ss_pred CCc
Confidence 753
No 208
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.62 E-value=2.8e-08 Score=107.25 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=61.3
Q ss_pred ceeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-----------chhHHHHHHHHHH----
Q 004316 126 ITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR---- 190 (761)
Q Consensus 126 iTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-----------~~qt~~~~~~~~~---- 190 (761)
.|+......+.+++..+.+|||+|+..|...+..+++.+|++|+|+|.++-. .......+.....
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444455567778999999999999999999999999999999999998732 1223334444433
Q ss_pred cCCCEEEEEeCCCC
Q 004316 191 YEVPRLAFINKLDR 204 (761)
Q Consensus 191 ~~~p~iiviNK~D~ 204 (761)
.++|+|+|+||+|+
T Consensus 259 ~~~piiLv~NK~DL 272 (353)
T 1cip_A 259 TDTSIILFLNKKDL 272 (353)
T ss_dssp TTSEEEEEEECHHH
T ss_pred cCCcEEEEEECcCc
Confidence 47899999999997
No 209
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.56 E-value=8.9e-08 Score=103.73 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=53.2
Q ss_pred eeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-----------chhHHHHHHHHHH----c
Q 004316 127 TIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR----Y 191 (761)
Q Consensus 127 Ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-----------~~qt~~~~~~~~~----~ 191 (761)
|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-. .......|..... .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 444444566778899999999999999999999999999999999998721 1223344444433 3
Q ss_pred CCCEEEEEeCCCC
Q 004316 192 EVPRLAFINKLDR 204 (761)
Q Consensus 192 ~~p~iiviNK~D~ 204 (761)
++|+|+|+||+|+
T Consensus 268 ~~piILv~NK~DL 280 (362)
T 1zcb_A 268 NVSIILFLNKTDL 280 (362)
T ss_dssp TSEEEEEEECHHH
T ss_pred CCCEEEEEEChhh
Confidence 7899999999997
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.54 E-value=1e-06 Score=96.83 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCcee-eeeeccCCcccccccChhhhhhhcceeeeceEEEeecC-eEEEEEeCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHE-IHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGH 150 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~-~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~ 150 (761)
..++|+|++|+|||||++.|+. .... .|++. .+..+..+ .++ .+.... ..++++|+||.
T Consensus 70 ~~valvG~nGaGKSTLln~L~G---l~~p~~GsI~--------~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG---IGNEEEGAAK--------TGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGI 130 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT---CCTTSTTSCC--------CCC----C-CCE-------EEECSSCTTEEEEECCCG
T ss_pred eEEEEECCCCCcHHHHHHHHhC---CCCccCceEE--------ECCeecce-eEE-------eccccccCCeeehHhhcc
Confidence 3899999999999999999964 2110 01111 11101000 111 111111 26899999996
Q ss_pred CC---cHHHHHH--HHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 151 VD---FTVEVER--ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 151 ~~---f~~~~~~--al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
.. -..+... .+...|..++ +|... .+.|...+.+.+...+.|+++|+||.|+
T Consensus 131 ~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 131 GSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp GGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred cchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 32 1222222 2334455554 77765 4677788888888889999999999886
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=103.73 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=48.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeec--------------
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------------- 138 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 138 (761)
.+|+|+|.+|+|||||+++|....-.+ . ...++|+......+.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~------~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~ 81 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASA------E---------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPA 81 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC----------------------------------CCSEEEEECCCHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccc------c---------------CCCccccCceeEEEEECCccceeeccccCcc
Confidence 469999999999999999996432100 0 01233443333333322
Q ss_pred ---CeEEEEEeCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 004316 139 ---DYQINIIDTPGHVDFTV-------EVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 139 ---~~~i~liDTPG~~~f~~-------~~~~al~~aD~ailVvDa~~ 175 (761)
...+.||||||+..+.. .....++.+|++++|+|+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 24699999999987654 46778899999999999974
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.49 E-value=3.9e-07 Score=100.03 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=77.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC--eEEEEEeC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (761)
..+.|++|+|+.|+|||||++.|+... + .+. .... ...+.+.......+...+ ..++++|+
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~--l------~g~----~~~~-----~~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTK--F------EGE----PATH-----TQPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSC--C----------------------CCSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCcc--c------cCC----cCCC-----CCccceEeeEEEEeecCccccccchhhh
Confidence 356789999999999999999996431 1 100 0000 001222221111122222 36899999
Q ss_pred CCCCCcH--------------HHHHHHHHh---------------cC-eEEEEEeCCCCcchhHHHHHHHHHHcCCCEEE
Q 004316 148 PGHVDFT--------------VEVERALRV---------------LD-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLA 197 (761)
Q Consensus 148 PG~~~f~--------------~~~~~al~~---------------aD-~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ii 197 (761)
||..+.. ..+..++.. .| ++++|+|+.++....+..+++.+. .++|+|+
T Consensus 103 ~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~ 181 (427)
T 2qag_B 103 VGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIP 181 (427)
T ss_dssp ECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEE
T ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEE
Confidence 9985431 112222221 12 466788999999888888888776 7899999
Q ss_pred EEeCCCCCCCC-hHHHHHHHHHHhCCc
Q 004316 198 FINKLDRMGAD-PWKVLDQARSKLRHH 223 (761)
Q Consensus 198 viNK~D~~~~~-~~~~~~~i~~~l~~~ 223 (761)
|+||+|....+ .....+.+++.+...
T Consensus 182 Vi~KtD~Lt~~E~~~l~~~I~~~L~~~ 208 (427)
T 2qag_B 182 IIAKADAISKSELTKFKIKITSELVSN 208 (427)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHBTT
T ss_pred EEcchhccchHHHHHHHHHHHHHHHHc
Confidence 99999987432 234445565555433
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=7.1e-06 Score=90.48 Aligned_cols=133 Identities=18% Similarity=0.122 Sum_probs=69.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccCh-hhhhhhcceeeeceE-------------EE
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSM-DLEREKGITIQSAAT-------------SC 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i-~~~~~v~~~~~~~~~~d~~-~~e~~~giTi~~~~~-------------~~ 135 (761)
+.+.|+++|.+|+||||++..|......- .+..-+..........+.. ......|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997432110 0110011100000000000 000112332221100 11
Q ss_pred eecCeEEEEEeCCCCCCcHH----HHH--HHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 136 AWKDYQINIIDTPGHVDFTV----EVE--RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 136 ~~~~~~i~liDTPG~~~f~~----~~~--~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
...++.+.||||||...... ++. .....+|.+++|+||..|.. .....+.....--+..+++||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCc
Confidence 12458999999999644322 221 22335799999999998632 2333333333333457899999985
No 214
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.45 E-value=3.1e-07 Score=91.26 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=69.7
Q ss_pred CCCCcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCCeEEecCcEEEEecCceeecceecCCCEEEE--ecc---
Q 004316 369 PDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--- 443 (761)
Q Consensus 369 ~~~p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--- 443 (761)
.++||.+.|..++. ..|++..|||.+|++++||.|.+.+.+...+|++|.. ...++++|.|||.+++ .|+
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~----~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILS----DDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp ----CBEEEEEEEE-SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECS----SSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCEEEEEEEEEc-CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEE----CCEEeEEECCCCEEEEEEcCCCHH
Confidence 46899999998876 3599999999999999999999999998889998873 2368999999999997 777
Q ss_pred ccccCceeecCCCc
Q 004316 444 DCASGDTFTDGSVK 457 (761)
Q Consensus 444 ~~~~GdtL~~~~~~ 457 (761)
++..||+|++.+++
T Consensus 78 di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 78 EILPGFILCDPNNL 91 (204)
T ss_dssp CCCTTCEEBCSSSC
T ss_pred HCccceEEECCCCC
Confidence 68999999987543
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.36 E-value=1.6e-06 Score=90.07 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.|++|+|+.|+|||||++.|+...... .|.+.-.. ... ......+++..-.... .-...++++|+||..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g--~~i---~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNRE--EKI---PKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------C---CCCCSCCEEEESCC-------CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCC--ccc---CcceeeeeeEEEeecC---CCcCCceEEechhhhh
Confidence 479999999999999999997543211 11111000 000 0000011111111100 0113689999999743
Q ss_pred cH------HH--------HHHHH--------------HhcCeEEEEEeC-CCCcchhHHHHHHHHHHcCCCEEEEEeCCC
Q 004316 153 FT------VE--------VERAL--------------RVLDGAILVLCS-VGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (761)
Q Consensus 153 f~------~~--------~~~al--------------~~aD~ailVvDa-~~g~~~qt~~~~~~~~~~~~p~iiviNK~D 203 (761)
.. .. ....+ ..++++++++|. ++|....+..+++.+... +++|+|+||+|
T Consensus 73 ~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 73 QINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp CSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGG
T ss_pred hcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccc
Confidence 10 01 11111 125888999995 489999999988888777 99999999999
Q ss_pred CCCCC-hHHHHHHHHHHh
Q 004316 204 RMGAD-PWKVLDQARSKL 220 (761)
Q Consensus 204 ~~~~~-~~~~~~~i~~~l 220 (761)
....+ .....+.+++.+
T Consensus 152 ~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 152 TMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp GSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 87533 223344455444
No 216
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.31 E-value=8.5e-07 Score=94.35 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=60.5
Q ss_pred cceeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCC-------CCcc----hhHHHHHHHHHH---
Q 004316 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSV-------GGVQ----SQSITVDRQMRR--- 190 (761)
Q Consensus 125 giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~-------~g~~----~qt~~~~~~~~~--- 190 (761)
..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-. ......|.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34555556677888999999999999999999999999999999999765 2111 123344444433
Q ss_pred -cCCCEEEEEeCCCC
Q 004316 191 -YEVPRLAFINKLDR 204 (761)
Q Consensus 191 -~~~p~iiviNK~D~ 204 (761)
.++|+++|+||+|+
T Consensus 232 ~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 232 FQNSSVILFLNKKDL 246 (327)
T ss_dssp GTTCEEEEEEECHHH
T ss_pred cCCceEEEEEECchh
Confidence 47899999999997
No 217
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.31 E-value=9.1e-07 Score=94.50 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=62.6
Q ss_pred hcceeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCC----------C-cchhHHHHHHHHHH--
Q 004316 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG----------G-VQSQSITVDRQMRR-- 190 (761)
Q Consensus 124 ~giTi~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~----------g-~~~qt~~~~~~~~~-- 190 (761)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ . -.......|.....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3445555666777889999999999999999999999999999999999972 1 11223344444433
Q ss_pred --cCCCEEEEEeCCCCC
Q 004316 191 --YEVPRLAFINKLDRM 205 (761)
Q Consensus 191 --~~~p~iiviNK~D~~ 205 (761)
.++|+++|+||+|+.
T Consensus 225 ~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred ccCCCeEEEEEECchhh
Confidence 478999999999973
No 218
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.27 E-value=9.6e-07 Score=96.49 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=59.2
Q ss_pred eeeeceEEEeecCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHH----c
Q 004316 127 TIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG----------GVQ-SQSITVDRQMRR----Y 191 (761)
Q Consensus 127 Ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~----------g~~-~qt~~~~~~~~~----~ 191 (761)
|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++ .-. ......+..... .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444445667788999999999999999999999999999999999986 211 122333444433 3
Q ss_pred CCCEEEEEeCCCC
Q 004316 192 EVPRLAFINKLDR 204 (761)
Q Consensus 192 ~~p~iiviNK~D~ 204 (761)
++|+|+|+||+|+
T Consensus 284 ~~piiLvgNK~DL 296 (402)
T 1azs_C 284 TISVILFLNKQDL 296 (402)
T ss_dssp SCCEEEEEECHHH
T ss_pred CCeEEEEEEChhh
Confidence 6899999999997
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.24 E-value=2e-06 Score=93.87 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=58.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecC------------
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------ 139 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 139 (761)
-..|+|+|++|+|||||+|+|+...... +.+ .+++|+......+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~-----~~~---------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~ 79 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGN-----PAN---------------YPYATIDPEEAKVAVPDERFDWLCEAYKP 79 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTS-----TTC---------------CSSCCCCTTEEEEEECCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc-----ccC---------------CCceeecceeeeeeeCCcchhhhhhhccc
Confidence 3579999999999999999997532101 000 13445544444444443
Q ss_pred -----eEEEEEeCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 004316 140 -----YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 140 -----~~i~liDTPG~~~-------f~~~~~~al~~aD~ailVvDa~~ 175 (761)
..+.++||||... +.......++.+|+++.|+|+.+
T Consensus 80 ~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999754 44567788899999999999975
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.20 E-value=9.2e-07 Score=93.54 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhHHH-HHHHHHHcCCCEEEEEeCCCCC
Q 004316 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSIT-VDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 141 ~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt~~-~~~~~~~~~~p~iiviNK~D~~ 205 (761)
.+.+||| +.+|...+..+++.+|++|+|+|+++.. ...... .+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 8888877788899999999999999764 333333 3334455789999999999985
No 221
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.19 E-value=1.6e-06 Score=93.57 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=49.9
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCC----------CCc-chhHHHHHHHHHH----cCCCEEEEEeCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSV----------GGV-QSQSITVDRQMRR----YEVPRLAFINKL 202 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~----------~g~-~~qt~~~~~~~~~----~~~p~iiviNK~ 202 (761)
+...+.+|||+|+.+|...+..+++.+|++|+|+|.+ ..- .......|..... .++|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999987 111 1222333444432 468999999999
Q ss_pred CC
Q 004316 203 DR 204 (761)
Q Consensus 203 D~ 204 (761)
|+
T Consensus 261 DL 262 (354)
T 2xtz_A 261 DI 262 (354)
T ss_dssp HH
T ss_pred ch
Confidence 97
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.12 E-value=2.6e-06 Score=89.14 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=43.6
Q ss_pred EeCCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 145 IDTPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 145 iDTPG~~-~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
=+-|||. ....++...+..+|+++.|+||..+.......+-+.+ .++|+++|+||+|+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 3579997 5678889999999999999999988766543333333 589999999999985
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.10 E-value=3.3e-06 Score=88.99 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=78.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChh-hhhhhcceeeece-------------EE
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------TS 134 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~~ 134 (761)
.+.|+++|+.|+||||++..|.... |.-.-....+... ....+... .....|+.+.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r--~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR--PAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS--SHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--HHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5678999999999999999987432 2111110011110 00000000 0111233332210 01
Q ss_pred EeecCeEEEEEeCCCCCC--cHHHHH------HHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCC
Q 004316 135 CAWKDYQINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~~--f~~~~~------~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~ 205 (761)
+.+.++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+.....+.... .+| ..+|+||+|..
T Consensus 176 ~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 123678999999999877 433222 345678999999999865 233333333332 577 67899999975
Q ss_pred CCChHHHHHHHHHHhCC
Q 004316 206 GADPWKVLDQARSKLRH 222 (761)
Q Consensus 206 ~~~~~~~~~~i~~~l~~ 222 (761)
. ... ....+...++.
T Consensus 253 ~-~~g-~~~~~~~~~~~ 267 (297)
T 1j8m_F 253 A-KGG-GALSAVAATGA 267 (297)
T ss_dssp T-THH-HHHHHHHTTTC
T ss_pred c-chH-HHHHHHHHHCc
Confidence 2 222 23334444443
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.06 E-value=2.7e-06 Score=97.34 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEE--E-eecCeEEEEEe
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS--C-AWKDYQINIID 146 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~--~-~~~~~~i~liD 146 (761)
.++..|+|+|.+|+|||||+|+|+.....+. +.+. . ++.|....... + ...+..+.|||
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~----~~~t-----t---------~~~T~gi~~~~~~~~~~~~~~i~LiD 97 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS----LGST-----V---------QSHTKGIWMWCVPHPKKPGHILVLLD 97 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSC----CCCS-----S---------SCCCCSEEEEEEECSSSTTCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccc----cCCC-----C---------CCceeEEEEeecccccCCCceEEEec
Confidence 4567899999999999999999964322111 1100 0 11111111000 0 12467899999
Q ss_pred CCCCCCcHH------HHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC
Q 004316 147 TPGHVDFTV------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE 192 (761)
Q Consensus 147 TPG~~~f~~------~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 192 (761)
|||..+... ....++...-..++|+|+..++..+...++..+...+
T Consensus 98 TpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 98 TEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp ECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred CCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 999865321 1222333322337889999999999888877765543
No 225
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.02 E-value=1.5e-05 Score=78.22 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=37.7
Q ss_pred EEEEEeCC------CCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH----HHHHH----cCCCEEEEEeCC-CCC
Q 004316 141 QINIIDTP------GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD----RQMRR----YEVPRLAFINKL-DRM 205 (761)
Q Consensus 141 ~i~liDTP------G~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~----~~~~~----~~~p~iiviNK~-D~~ 205 (761)
++..-.+| |+..+...+..++..+|++|+|||+++........-+ ..+.. .++|++|+.||. |++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 34444566 7788888899999999999999999865322233322 11211 478999999995 776
Q ss_pred CC
Q 004316 206 GA 207 (761)
Q Consensus 206 ~~ 207 (761)
++
T Consensus 177 ~A 178 (227)
T 3l82_B 177 KR 178 (227)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.99 E-value=4.1e-05 Score=75.41 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=59.6
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc-----CCCEEEEEeCCCCCCCChHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-----EVPRLAFINKLDRMGADPWKVL 213 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~iiviNK~D~~~~~~~~~~ 213 (761)
.+.+.|||||+.. ......++..+|.+|+|+.+.... ..+...++.+... ++++.+|+||+|.......+ +
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~-~ 150 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNV-L 150 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHH-H
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHH-H
Confidence 5899999999987 356778899999999999998776 7777777777654 46778999999964332233 3
Q ss_pred HHHHHHhCCce
Q 004316 214 DQARSKLRHHC 224 (761)
Q Consensus 214 ~~i~~~l~~~~ 224 (761)
.+..+.++...
T Consensus 151 ~~~l~~~~~~v 161 (206)
T 4dzz_A 151 KESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHTCCB
T ss_pred HHHHHHcCCce
Confidence 33334455443
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.83 E-value=3.5e-05 Score=83.76 Aligned_cols=62 Identities=16% Similarity=-0.000 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 142 i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+.-+|+| +.+|...+....+.+|++|+|+|+.+........+.+.+ .++|+++|+||+|+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 3344554 788988888888999999999999876533222222222 3789999999999864
No 228
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.80 E-value=6.4e-05 Score=77.38 Aligned_cols=61 Identities=11% Similarity=0.013 Sum_probs=42.7
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHH----HHH---H-HcCCCEEEEEeC-CCCCCCC
Q 004316 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD----RQM---R-RYEVPRLAFINK-LDRMGAD 208 (761)
Q Consensus 148 PG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~----~~~---~-~~~~p~iiviNK-~D~~~~~ 208 (761)
.|+..+...+..++..+|++|+|||+++........-+ ..+ . ..++|++|+.|| -|++++-
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am 264 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM 264 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC
Confidence 47788999999999999999999999865322222211 222 2 258999999997 5887653
No 229
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.78 E-value=1.3e-05 Score=84.74 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCc-chhH-HHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGV-QSQS-ITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~-~~qt-~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
+.+|......+++.+|++++|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 3444433345789999999999999764 4433 233445666899999999999985
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.72 E-value=1.1e-05 Score=83.27 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCCCCCc-HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 147 TPGHVDF-TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 147 TPG~~~f-~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
-|||... ..++...+..+|++|.|+||..+.......+- .+ ++|+++|+||+|+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIA 59 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGS
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCC
Confidence 3999644 46888999999999999999987655432221 22 89999999999985
No 231
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.59 E-value=0.0005 Score=68.20 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=59.6
Q ss_pred cCeEEEEEeCCCC-CCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc-CCCEEEEEeCCCCCC-CChHHHHH
Q 004316 138 KDYQINIIDTPGH-VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPRLAFINKLDRMG-ADPWKVLD 214 (761)
Q Consensus 138 ~~~~i~liDTPG~-~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~~p~iiviNK~D~~~-~~~~~~~~ 214 (761)
..+.+.+||||+. ... .+..++..+|.+|+++.+.......+...++.+... +.+..+++|++|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 4588999999997 543 456788999999999998766556666777777663 778899999999764 33333444
Q ss_pred HHHHHhCCc
Q 004316 215 QARSKLRHH 223 (761)
Q Consensus 215 ~i~~~l~~~ 223 (761)
.+++ ++..
T Consensus 144 ~l~~-~g~~ 151 (209)
T 3cwq_A 144 LLTT-AGLP 151 (209)
T ss_dssp HHHH-TTCC
T ss_pred HHHH-cCCc
Confidence 4443 5543
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.58 E-value=5.6e-05 Score=78.91 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=34.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 150 (761)
+..+|+++|.+|+|||||+|+|+...... +. ...|+|.......+ +..+.|+||||.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~-----~~---------------~~~g~T~~~~~~~~---~~~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK-----TG---------------DRPGITTSQQWVKV---GKELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------------------------CCEEE---TTTEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee-----cC---------------CCCCeeeeeEEEEe---CCCEEEEECcCc
Confidence 44579999999999999999997432111 11 11455655443222 347999999998
Q ss_pred CC
Q 004316 151 VD 152 (761)
Q Consensus 151 ~~ 152 (761)
..
T Consensus 176 ~~ 177 (282)
T 1puj_A 176 LW 177 (282)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.57 E-value=0.00025 Score=75.34 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=47.7
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHH------------hcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCE-EEEEeCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALR------------VLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKL 202 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~------------~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~-iiviNK~ 202 (761)
.++.+.||||||...........+. .+|.+++|+|+..+ ..+ +.++..+ ..++ =+++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~---l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG---VIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH---HHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH---HHHHHHHhhcCCCcEEEEeCC
Confidence 4689999999998654322222221 27899999999854 222 2333333 2443 4789999
Q ss_pred CCCCCChHHHHHHHHHHhCCce
Q 004316 203 DRMGADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 203 D~~~~~~~~~~~~i~~~l~~~~ 224 (761)
|.... . ..+..+...++.+.
T Consensus 265 d~~~~-~-g~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 265 DSTSK-G-GIGLAIKELLNIPI 284 (320)
T ss_dssp GGCSC-T-THHHHHHHHHCCCE
T ss_pred CCCCc-h-hHHHHHHHHHCcCE
Confidence 97432 2 24445555666544
No 234
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.54 E-value=0.00011 Score=79.69 Aligned_cols=55 Identities=15% Similarity=-0.111 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 150 ~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
..+|...+....+.+|++|+|+|+++........+.+. ..++|+++|+||+|+..
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSC
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCC
Confidence 46788888888888999999999987421111111111 13789999999999853
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.49 E-value=0.00024 Score=78.08 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCce-eeeeeccCCccc-ccccChhh-hhhhcceeeeceE-------------E
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIH-EIHEVRGRDGVG-AKMDSMDL-EREKGITIQSAAT-------------S 134 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~-~~~~v~~~~~~~-~~~d~~~~-e~~~giTi~~~~~-------------~ 134 (761)
..+.|+++|+.|+||||++..|......-. +.. +-+.+... ...+.... ....|+.+..... .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl-lvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~ 175 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL-LVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE-EEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-EeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHH
Confidence 456789999999999999998874321110 000 00110000 00000000 1112333222110 0
Q ss_pred EeecCeEEEEEeCCCCCCcHH----HHH--HHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCC
Q 004316 135 CAWKDYQINIIDTPGHVDFTV----EVE--RALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGA 207 (761)
Q Consensus 135 ~~~~~~~i~liDTPG~~~f~~----~~~--~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~ 207 (761)
+...++.+.||||||...... ++. ..+..+|.+++|+|+..+ .......+... ..++ .-+++||+|...
T Consensus 176 ~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKlD~~~- 251 (425)
T 2ffh_A 176 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGDA- 251 (425)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESGGGCS-
T ss_pred HHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCcCCcc-
Confidence 112568999999999754422 221 122358999999999865 22222222222 1344 467899999742
Q ss_pred ChHHHHHHHHHHhCCce
Q 004316 208 DPWKVLDQARSKLRHHC 224 (761)
Q Consensus 208 ~~~~~~~~i~~~l~~~~ 224 (761)
... ..-.+...++.+.
T Consensus 252 ~~g-~alsi~~~~g~PI 267 (425)
T 2ffh_A 252 RGG-AALSARHVTGKPI 267 (425)
T ss_dssp SCH-HHHHHHHHHCCCE
T ss_pred cHH-HHHHHHHHHCCCE
Confidence 222 2333555556543
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.46 E-value=0.00047 Score=69.86 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=61.8
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCCCChHHHHHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 216 (761)
..+.+.|||||+.... ....++..+|.+|+|+++...-......+.+.+...+++ +.+++||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5689999999987654 456778999999999998765445555666667777765 5789999983 3456777
Q ss_pred HHHhCCceeeeeec
Q 004316 217 RSKLRHHCAAVQVP 230 (761)
Q Consensus 217 ~~~l~~~~~~~~~p 230 (761)
.+.++..+....+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 88887433333444
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.43 E-value=0.00026 Score=75.40 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCccc-ccccChh-hhhhhcceeeeceEEE---------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVG-AKMDSMD-LEREKGITIQSAATSC--------- 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~----g~i~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~~~~--------- 135 (761)
+-..|+++|+.|+|||||+..|.... |.+. +.+.+... ...+... .-+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~----l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV----IAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE----EEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE----EEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 45679999999999999999987432 2211 11110000 0000000 0111232221110000
Q ss_pred ----eecCeEEEEEeCCCCCC----cHHHHHHH--HHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCC
Q 004316 136 ----AWKDYQINIIDTPGHVD----FTVEVERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (761)
Q Consensus 136 ----~~~~~~i~liDTPG~~~----f~~~~~~a--l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~ 205 (761)
...++.+.++||+|... +..++... .-..|-.++++|+..+. +.....+.....--..++++||+|..
T Consensus 204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 11346788999999743 33333221 12479999999988762 33333333332222348889999973
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.39 E-value=0.00035 Score=80.87 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=40.4
Q ss_pred eEEEEEeCCCCCCc---------HHHHHHHHH----h-cCeEEEEEeCCCCcch-hHHHHHHHHHHcCCCEEEEEeCCCC
Q 004316 140 YQINIIDTPGHVDF---------TVEVERALR----V-LDGAILVLCSVGGVQS-QSITVDRQMRRYEVPRLAFINKLDR 204 (761)
Q Consensus 140 ~~i~liDTPG~~~f---------~~~~~~al~----~-aD~ailVvDa~~g~~~-qt~~~~~~~~~~~~p~iiviNK~D~ 204 (761)
-.+.|+|.||...- ...+...++ . ...+++++++...... ....+.+.+...+.+.|+|+||+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 56999999985321 222322222 2 2566677776554332 2344555555568899999999999
Q ss_pred CCC
Q 004316 205 MGA 207 (761)
Q Consensus 205 ~~~ 207 (761)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 743
No 239
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.38 E-value=0.00061 Score=71.37 Aligned_cols=82 Identities=15% Similarity=0.029 Sum_probs=57.8
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH------cCCCE-EEEEeCCCCCCCChHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YEVPR-LAFINKLDRMGADPWK 211 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~-iiviNK~D~~~~~~~~ 211 (761)
.+.+.|||||+.... ....++..+|.+|+|+.+...........++.+.. .++++ -+|+|+.|.......+
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 231 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKS 231 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHH
Confidence 478999999997653 34567788999999999876555455555544443 36675 4889999975433446
Q ss_pred HHHHHHHHhCC
Q 004316 212 VLDQARSKLRH 222 (761)
Q Consensus 212 ~~~~i~~~l~~ 222 (761)
.++++.+.++.
T Consensus 232 ~~~~~~~~~~~ 242 (298)
T 2oze_A 232 NLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 67777777764
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.37 E-value=0.00043 Score=77.04 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccc-cccChhh-hhhhcceeeeceEE----------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGA-KMDSMDL-EREKGITIQSAATS---------- 134 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~----g~i~~~~~v~~~~~~~~-~~d~~~~-e~~~giTi~~~~~~---------- 134 (761)
.-..|+|+|..|+|||||+..|.... |.+. +.+++.... ..+.... ...+++.+-.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~----l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM----LAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE----EECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE----EecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 34579999999999999999986431 2221 111110000 0000000 01223322211100
Q ss_pred ---EeecCeEEEEEeCCCCCCcH----HHH---HHHHH-----hcCeEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEEE
Q 004316 135 ---CAWKDYQINIIDTPGHVDFT----VEV---ERALR-----VLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLAF 198 (761)
Q Consensus 135 ---~~~~~~~i~liDTPG~~~f~----~~~---~~al~-----~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~~p~iiv 198 (761)
....++.+.||||+|..... .++ .+.++ ..+-++||+|+..|.. .....+... ..++ ..++
T Consensus 368 l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvI 444 (503)
T 2yhs_A 368 IQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGIT 444 (503)
T ss_dssp HHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEE
T ss_pred HHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEE
Confidence 01245789999999985332 222 22222 1457899999987722 222222222 2333 3678
Q ss_pred EeCCCCCCCChHHHHHHHHHHhCCc
Q 004316 199 INKLDRMGADPWKVLDQARSKLRHH 223 (761)
Q Consensus 199 iNK~D~~~~~~~~~~~~i~~~l~~~ 223 (761)
+||+|.. +.. ..+-.+...++.+
T Consensus 445 lTKLD~t-akg-G~~lsi~~~~~~P 467 (503)
T 2yhs_A 445 LTKLDGT-AKG-GVIFSVADQFGIP 467 (503)
T ss_dssp EECGGGC-SCC-THHHHHHHHHCCC
T ss_pred EEcCCCc-ccc-cHHHHHHHHHCCC
Confidence 9999963 222 2333444455543
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.33 E-value=0.00054 Score=72.19 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=72.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChh-hhhhhcceeeece-------------E
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------T 133 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~ 133 (761)
+...|+++|+.|+||||++..|...- |.-......+.. . ....+... .-...|+.+.... .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~-r-~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF-R-AAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT-C-HHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc-c-HHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45679999999999999999886432 210000000100 0 00000000 0011233221100 0
Q ss_pred EEeecCeEEEEEeCCCCCCcHHHHH-------HHH-----HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEe
Q 004316 134 SCAWKDYQINIIDTPGHVDFTVEVE-------RAL-----RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFIN 200 (761)
Q Consensus 134 ~~~~~~~~i~liDTPG~~~f~~~~~-------~al-----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviN 200 (761)
.....++.+.|+||||.......+. +.+ ...|.+++|+|+..+ .......+.... ..+ .-+++|
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlT 257 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILT 257 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEe
Confidence 0012467899999999754333321 122 127889999999744 122222222222 233 367789
Q ss_pred CCCCCCCChHHHHHHHHHHhCCcee
Q 004316 201 KLDRMGADPWKVLDQARSKLRHHCA 225 (761)
Q Consensus 201 K~D~~~~~~~~~~~~i~~~l~~~~~ 225 (761)
|+|.. +.... +-++...++.+..
T Consensus 258 k~D~~-~~gG~-~l~~~~~~~~Pi~ 280 (306)
T 1vma_A 258 KLDGT-AKGGI-TLAIARELGIPIK 280 (306)
T ss_dssp CGGGC-SCTTH-HHHHHHHHCCCEE
T ss_pred CCCCc-cchHH-HHHHHHHHCCCEE
Confidence 99974 22222 4556666665443
No 242
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.25 E-value=0.0021 Score=67.59 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=57.7
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCEE-EEEeCCCCCCCChHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRL-AFINKLDRMGADPWKV 212 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~i-iviNK~D~~~~~~~~~ 212 (761)
+++.+.|||||+..... .+..++..+|.+|+|+++...-.......++.+.. .+++++ +|+||.+.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 35899999999875432 23456789999999998765434445555566554 345554 899999842 45
Q ss_pred HHHHHHHhCCceeeeeec
Q 004316 213 LDQARSKLRHHCAAVQVP 230 (761)
Q Consensus 213 ~~~i~~~l~~~~~~~~~p 230 (761)
++++.+.++..... .+|
T Consensus 229 ~~~~~~~~g~~v~~-~Ip 245 (307)
T 3end_A 229 VDRFCKETNFRRLA-HMP 245 (307)
T ss_dssp HHHHHHHHTCCEEE-EEC
T ss_pred HHHHHHHcCCCcee-eCC
Confidence 67777777765543 344
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.19 E-value=0.0006 Score=71.54 Aligned_cols=147 Identities=20% Similarity=0.225 Sum_probs=72.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChh-hhhhhcceeeece-------------E
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------T 133 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~---g~i~~~~~v~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~ 133 (761)
+-+.++++|+.|+||||++..|.... +.-......+... ........ .....|+.+-... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34679999999999999999886432 1110100011110 00000000 0011233322110 0
Q ss_pred EEeecCeEEEEEeCCCCCCcHH----HHHHHH--HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCC-EEEEEeCCCCCC
Q 004316 134 SCAWKDYQINIIDTPGHVDFTV----EVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMG 206 (761)
Q Consensus 134 ~~~~~~~~i~liDTPG~~~f~~----~~~~al--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~iiviNK~D~~~ 206 (761)
.+...++.+.||||||...... ++.... -.+|.+++|+|+..+ .......+.... .++ .-+++||+|...
T Consensus 175 ~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS
T ss_pred HHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc
Confidence 0011468999999998754322 222222 248999999998754 222222222221 244 357899999753
Q ss_pred CChHHHHHHHHHHhCCce
Q 004316 207 ADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 207 ~~~~~~~~~i~~~l~~~~ 224 (761)
... ..-++...++.+.
T Consensus 252 -~~g-~~~~~~~~~~~pi 267 (295)
T 1ls1_A 252 -RGG-AALSARHVTGKPI 267 (295)
T ss_dssp -SCH-HHHHHHHHHCCCE
T ss_pred -cHH-HHHHHHHHHCcCE
Confidence 222 2334445555443
No 244
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.19 E-value=0.00017 Score=74.38 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~~ 152 (761)
.+++++|.+|+|||||+|+|+..... ..+ ...|+|....... . +..+.+|||||..+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~--~~~------------------~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS--SVG------------------AQPGITKGIQWFS--L-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------------------------CCSCEEE--C-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc--ccC------------------CCCCCccceEEEE--e-CCCEEEEECCCccc
Confidence 58999999999999999999742211 000 1135555443221 1 34789999999875
Q ss_pred c
Q 004316 153 F 153 (761)
Q Consensus 153 f 153 (761)
.
T Consensus 157 ~ 157 (262)
T 3cnl_A 157 K 157 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.0015 Score=68.76 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccc-cccChhh-hhhhcceeeeceE-------------EE
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA-KMDSMDL-EREKGITIQSAAT-------------SC 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~-~~d~~~~-e~~~giTi~~~~~-------------~~ 135 (761)
+-..|+|+|+.|+|||||++.|......-...-.+.+.+.... ..+.... .+.+++.+-.... ..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998743211000000111110000 0000000 0112222211100 00
Q ss_pred eecCeEEEEEeCCCCCCcH----HHHH---HHH-----HhcCeEEEEEeCCCCcchhHHHHHHHH-HHcCCCEEEEEeCC
Q 004316 136 AWKDYQINIIDTPGHVDFT----VEVE---RAL-----RVLDGAILVLCSVGGVQSQSITVDRQM-RRYEVPRLAFINKL 202 (761)
Q Consensus 136 ~~~~~~i~liDTPG~~~f~----~~~~---~al-----~~aD~ailVvDa~~g~~~qt~~~~~~~-~~~~~p~iiviNK~ 202 (761)
...++.+.++||+|..... .+.. .++ ...+.+++++|+..+.. ....+... ...++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECC
Confidence 1234667899999975432 2221 121 12677899999987643 22223333 23344 57889999
Q ss_pred CCCCCChHHHHHHHHHHhCCce
Q 004316 203 DRMGADPWKVLDQARSKLRHHC 224 (761)
Q Consensus 203 D~~~~~~~~~~~~i~~~l~~~~ 224 (761)
|.. +..- .+-.+...++.+.
T Consensus 258 d~~-a~gg-~~l~i~~~~~~pi 277 (304)
T 1rj9_A 258 DGT-AKGG-VLIPIVRTLKVPI 277 (304)
T ss_dssp TSS-CCCT-THHHHHHHHCCCE
T ss_pred ccc-cccc-HHHHHHHHHCCCe
Confidence 874 2222 2334455555443
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.02 E-value=0.00087 Score=70.30 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH----cCCceeeeeeccCCcccccccChhh-hhhhcceeeece-------EEEeec
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY----TGRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAA-------TSCAWK 138 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~----~g~i~~~~~v~~~~~~~~~~d~~~~-e~~~giTi~~~~-------~~~~~~ 138 (761)
+-+.|+++|+.|+||||++..|... .|. +..-++.........+.... -...|+.+.... ......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 4568999999999999999998642 231 11111111000000000000 001122111000 000125
Q ss_pred CeEEEEEeCCCCCCcHHHH----HHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHHHcC-CC-EEEEEeCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEV----ERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYE-VP-RLAFINKLDRM 205 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~----~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~-~p-~iiviNK~D~~ 205 (761)
++.+.|+||||........ ...+. ..|.+++|+|++.+.. .+.+.+.... ++ .-+++||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 6799999999986543322 22222 2578899999987531 1222222221 22 25667999975
No 247
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.85 E-value=0.0031 Score=69.61 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.++--|+|+|.+++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46778999999999999999999865
No 248
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=96.84 E-value=0.0044 Score=54.35 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCcEEEEEeeeeccCccEEEEEEEcceecCCCEEEecCCC-eEEecCcEEEEecCceeecceecCCCEEEE--ecc--cc
Q 004316 371 GPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTG-KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV--DC 445 (761)
Q Consensus 371 ~p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~-~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~ 445 (761)
-|....+.+++..=+|.+..|||.+|+|++|+.| +.+ ...+|.+|.. ..+++++|.+||-|++ .|. ++
T Consensus 33 ~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~~I 105 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIGKV 105 (116)
T ss_dssp CSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCCCC
T ss_pred CcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCcccc
Confidence 4544444442222248899999999999999999 444 4556666652 4568999999999985 454 56
Q ss_pred ccCceeec
Q 004316 446 ASGDTFTD 453 (761)
Q Consensus 446 ~~GdtL~~ 453 (761)
+.||+|..
T Consensus 106 ~~GdVLyv 113 (116)
T 1xe1_A 106 KKGDVLEI 113 (116)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 77877753
No 249
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.78 E-value=0.0035 Score=64.79 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=51.4
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCC
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRM 205 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~ 205 (761)
.+.+.|||||+..... ........+|.+|+|+.+...-........+.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 3789999999975532 23344578999999999987767777777888888888876 889999964
No 250
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.76 E-value=0.0013 Score=68.52 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=51.4
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchh---HHH--------------HH--HHHHH----cC-CC
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQ---SIT--------------VD--RQMRR----YE-VP 194 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~q---t~~--------------~~--~~~~~----~~-~p 194 (761)
.+.+.|||||+.. ...+..++..+|.+|+|+.+....... +.. +| +.+.. .+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 466788999999999999876321100 011 22 33322 24 66
Q ss_pred EEEEEeCCCCCC-CChHHHHHHHHHH---hCC
Q 004316 195 RLAFINKLDRMG-ADPWKVLDQARSK---LRH 222 (761)
Q Consensus 195 ~iiviNK~D~~~-~~~~~~~~~i~~~---l~~ 222 (761)
+.+|+|++|... ....+..+.+.+. ++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 789999999754 2333444444443 664
No 251
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.74 E-value=0.029 Score=56.27 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=58.6
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCC---CEEEEEeCCCCCCCChHHHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV---PRLAFINKLDRMGADPWKVLDQ 215 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~---p~iiviNK~D~~~~~~~~~~~~ 215 (761)
.+.+.|||||+.... ....++..+|.+|+|+.+...-...+...++.+...+. ..-+|+|++|...... .++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~---~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT---SDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC---HHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC---HHH
Confidence 488999999997643 55667899999999999876555556667777776663 3688999999653322 256
Q ss_pred HHHHhCCce
Q 004316 216 ARSKLRHHC 224 (761)
Q Consensus 216 i~~~l~~~~ 224 (761)
+.+.++...
T Consensus 193 ~~~~~~~~v 201 (245)
T 3ea0_A 193 IEKVIGRPI 201 (245)
T ss_dssp HHHHHTSCE
T ss_pred HHHHhCCCe
Confidence 666777644
No 252
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.73 E-value=0.0053 Score=62.95 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=48.7
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc--CCCEEEEEeCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDR 204 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~iiviNK~D~ 204 (761)
..+.+.|||||+... .....++..+|.+|+|+.+...-......+.+.+... +.++.+|+|+.+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 358899999999764 4567788899999999998664444445566666655 4577899999954
No 253
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.67 E-value=0.0025 Score=64.89 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=56.5
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcC---------CCEEEEEeCCCCCCCCh
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE---------VPRLAFINKLDRMGADP 209 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~---------~p~iiviNK~D~~~~~~ 209 (761)
.+.+.|||||+... .....++..+|.+|+|+++...-.......++.+...+ ...-+|+|++|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999999654 46778889999999999987654445555555555443 45688999998521000
Q ss_pred H--HHHHHHHHHhCCce
Q 004316 210 W--KVLDQARSKLRHHC 224 (761)
Q Consensus 210 ~--~~~~~i~~~l~~~~ 224 (761)
. ..++++.+.++...
T Consensus 191 ~~~~~~~~~~~~~~~~~ 207 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIKL 207 (260)
T ss_dssp TSSCCHHHHHHHHCSEE
T ss_pred ccccCHHHHHHHhCCce
Confidence 0 01356666776543
No 254
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.63 E-value=0.012 Score=56.73 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=91.6
Q ss_pred CCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccc
Q 004316 620 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQ 699 (761)
Q Consensus 620 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~ 699 (761)
+..+.||.|.+... +-.+---.+.+..|-..|.++|+.+|+..-..|...+.|.++-..+|.|...|.+.. .|.+.+.
T Consensus 80 ~~~l~nv~vVVtRy-fGGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y 157 (191)
T 2cve_A 80 AQGLDRVAVLVVRY-FGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEETY 157 (191)
T ss_dssp HTTBCSEEEEEEEE-CCSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEE
T ss_pred HcCCCcEEEEEEEE-eCCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEE
Confidence 45678888887741 112223345666788888899999999999999999999999999999999999988 9998887
Q ss_pred cCCeEEEEEEechhhhhchHHHHhhhcCCeEEE
Q 004316 700 EGDDSVITAHVPLNNMFGYSTALRSMTQGKGEF 732 (761)
Q Consensus 700 ~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~ 732 (761)
.+....++..+|..+.-.|...|..+|+|++.+
T Consensus 158 ~~~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 158 TPEGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp ETTEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred cCCeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 644388999999999999999999999999754
No 255
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.63 E-value=0.0058 Score=64.10 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=51.9
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRM 205 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~ 205 (761)
+.+.|||||+..... ........+|.+|+|+.+......+....++.+...+.+++ +|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 789999999976543 23334578999999999988777788888888888888864 788999964
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.63 E-value=0.001 Score=70.04 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHhcCeEEEEEeCCCCcchhH--HHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 160 ALRVLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 160 al~~aD~ailVvDa~~g~~~qt--~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
++..+|.+++|+|+..+..... .+.+..+...++|+++|+||+|+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 5788999999999997765554 2233344567999999999999864
No 257
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.44 E-value=0.014 Score=60.81 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=52.3
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC
Q 004316 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (761)
Q Consensus 140 ~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~ 206 (761)
+.+.|||||+..... ......+.+|++|+|+.+...-.......++.+...+.++ -+|+||+|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 789999999976543 3344567799999999998776777778888888888876 67889999743
No 258
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.42 E-value=0.0077 Score=61.70 Aligned_cols=88 Identities=9% Similarity=-0.148 Sum_probs=61.5
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCC------CCh-
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMG------ADP- 209 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~~------~~~- 209 (761)
+.+.+.|||||+..........++..+|.+|+|+.+...........++.+...+++++ +|+|+.|... ...
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 56899999999976543333334457999999999887666667777788888889987 8999998411 001
Q ss_pred -HHHHHHHHHHhCCcee
Q 004316 210 -WKVLDQARSKLRHHCA 225 (761)
Q Consensus 210 -~~~~~~i~~~l~~~~~ 225 (761)
...++++.+.++....
T Consensus 207 ~~~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGFF 223 (262)
T ss_dssp CCCCHHHHHHHTTCSEE
T ss_pred cccHHHHHHHHcCCCeE
Confidence 2335667777775543
No 259
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.21 E-value=0.017 Score=60.56 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccc-cccChhhh-hhhcceeeeceEE-E--------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGA-KMDSMDLE-REKGITIQSAATS-C-------- 135 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~----g~i~~~~~v~~~~~~~~-~~d~~~~e-~~~giTi~~~~~~-~-------- 135 (761)
+-..++++|+.|+|||||+..|.... |.+. +.+.+.... ..+....- ...++.+-..... .
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~----l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL----MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 174 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE----EECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE----EEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence 34579999999999999999987432 2221 111100000 00000000 0123333221111 0
Q ss_pred -----eecCeEEEEEeCCCCCCcHHHH-------HHHH-----HhcCeEEEEEeCCCCcchhHHHHHHHHH-HcCCCEEE
Q 004316 136 -----AWKDYQINIIDTPGHVDFTVEV-------ERAL-----RVLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLA 197 (761)
Q Consensus 136 -----~~~~~~i~liDTPG~~~f~~~~-------~~al-----~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~~p~ii 197 (761)
...++...++||.|...+.... ..++ ...+-+++|+|++.|...... .+... ..++ .++
T Consensus 175 ~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~i 251 (302)
T 3b9q_A 175 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGL 251 (302)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEE
T ss_pred HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEE
Confidence 0123457899999986543221 1122 125667999998888665543 22332 3454 367
Q ss_pred EEeCCCCC
Q 004316 198 FINKLDRM 205 (761)
Q Consensus 198 viNK~D~~ 205 (761)
+++|+|..
T Consensus 252 iiThlD~~ 259 (302)
T 3b9q_A 252 ILTKLDGS 259 (302)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCC
Confidence 88999864
No 260
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.20 E-value=0.01 Score=58.29 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=92.5
Q ss_pred CCCeeeEEEEEEeCccccCCCcHHHHHHHHHHHHHHHHHhcCCeEeeeeEEEEEeecccchhhHHHHHhcCCceeecccc
Q 004316 620 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQ 699 (761)
Q Consensus 620 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~ 699 (761)
+..++||.|.++.. +-.+---.+.+..|-..|.++|+.+|+..-..|...+.|.++-..+|.|...|.+..+.|.+.+.
T Consensus 92 ~~~l~nv~vVVtRy-fGGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y 170 (217)
T 1vi7_A 92 GSGVGEITAVVVRY-YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDY 170 (217)
T ss_dssp HHTCCSEEEECCEE-CCSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred HcCCCCEEEEEEEE-eCCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEe
Confidence 34577888777641 11222334566668888889999999999999999999999999999999999999999999887
Q ss_pred cCCeEEEEEEechhhhhchHHHHhhhcCCeEEEE
Q 004316 700 EGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 733 (761)
Q Consensus 700 ~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 733 (761)
. +...++..+|..+.-.|...|..+|+|++.+.
T Consensus 171 ~-~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 171 Q-AFVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp S-SSEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred c-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 5 45788999999999999999999999998543
No 261
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.20 E-value=0.015 Score=59.26 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=57.4
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH------cCCCEE-EEEeCCCCCCCChH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YEVPRL-AFINKLDRMGADPW 210 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~ 210 (761)
..+.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+.. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 5689999999997653 35677889999999999875433333333333322 256664 89999986543344
Q ss_pred HHHHHHHHHhCCce
Q 004316 211 KVLDQARSKLRHHC 224 (761)
Q Consensus 211 ~~~~~i~~~l~~~~ 224 (761)
+..+.+.+.++...
T Consensus 188 ~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 188 QVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHGGGB
T ss_pred HHHHHHHHHccccc
Confidence 56677777776543
No 262
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.13 E-value=0.029 Score=58.13 Aligned_cols=85 Identities=11% Similarity=-0.029 Sum_probs=52.0
Q ss_pred CeEEEEEeCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChHHH
Q 004316 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKV 212 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~-~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~ 212 (761)
.+.+.||||||....... .......+|.+|+|+.+...-.......++.+.. .++++ -+|+|+.+. ....+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~--~~~~~~ 195 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT--DREDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC--TTHHHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc--hhHHHH
Confidence 689999999996432111 1122357999999998765333333334444333 36664 578899873 223466
Q ss_pred HHHHHHHhCCcee
Q 004316 213 LDQARSKLRHHCA 225 (761)
Q Consensus 213 ~~~i~~~l~~~~~ 225 (761)
++++.+.++....
T Consensus 196 ~~~l~~~~g~~~l 208 (289)
T 2afh_E 196 IIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHTSCEE
T ss_pred HHHHHHHcCcccc
Confidence 7778777776543
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.06 E-value=0.039 Score=56.33 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=52.6
Q ss_pred CeEEEEEeCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHH----cCCCE-EEEEeCCCCCCCChHHH
Q 004316 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKV 212 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~-~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~ 212 (761)
.+.+.||||||....... .......+|.+|+|+.+...-.......++.+.. .++++ -+|+|+.+.. ...+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA--NEYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS--CCHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc--hhHHH
Confidence 489999999996432111 1112257999999999865433334444444443 25564 5788998742 22466
Q ss_pred HHHHHHHhCCcee
Q 004316 213 LDQARSKLRHHCA 225 (761)
Q Consensus 213 ~~~i~~~l~~~~~ 225 (761)
.+++.+.++....
T Consensus 193 ~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCccc
Confidence 7778777776543
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.79 E-value=0.045 Score=58.72 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccc-cccChhhh-hhhcceeeeceEE----------
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGA-KMDSMDLE-REKGITIQSAATS---------- 134 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~----g~i~~~~~v~~~~~~~~-~~d~~~~e-~~~giTi~~~~~~---------- 134 (761)
+-..|+++|+.|+|||||+..|.... |.+. +.+.+.... ..+....- ...++.+-.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~----l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL----MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 231 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE----EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE----EecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence 34579999999999999999987532 2221 111110000 00000000 1123332211100
Q ss_pred -E---eecCeEEEEEeCCCCCCcHHHH-------HHHH-----HhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEE
Q 004316 135 -C---AWKDYQINIIDTPGHVDFTVEV-------ERAL-----RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAF 198 (761)
Q Consensus 135 -~---~~~~~~i~liDTPG~~~f~~~~-------~~al-----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiv 198 (761)
+ ...++...++||.|...+.... ..++ ...+-+++|+|++.|....... .......++ .+++
T Consensus 232 ~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~-~~~~~~~g~-t~ii 309 (359)
T 2og2_A 232 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA-REFNEVVGI-TGLI 309 (359)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH-HHHHHHTCC-CEEE
T ss_pred HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH-HHHHHhcCC-eEEE
Confidence 0 0123557899999986542221 1111 1256779999988876554331 122223344 3778
Q ss_pred EeCCCCC
Q 004316 199 INKLDRM 205 (761)
Q Consensus 199 iNK~D~~ 205 (761)
++|+|..
T Consensus 310 iThlD~~ 316 (359)
T 2og2_A 310 LTKLDGS 316 (359)
T ss_dssp EESCTTC
T ss_pred EecCccc
Confidence 9999864
No 265
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.71 E-value=0.021 Score=58.12 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=60.1
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~ 217 (761)
++.+.|||||+... .....++..+|.+|+|+.+...-...+...++.+...+.+. -+|+|++|.... ...++++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~--~~~~~~~~ 185 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEIE 185 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc--cchHHHHH
Confidence 58999999998765 56778889999999999987654555666677776667665 588899986422 24566777
Q ss_pred HHhCCce
Q 004316 218 SKLRHHC 224 (761)
Q Consensus 218 ~~l~~~~ 224 (761)
+.++...
T Consensus 186 ~~~~~~~ 192 (263)
T 1hyq_A 186 AILEAKV 192 (263)
T ss_dssp HHTTSCE
T ss_pred HHhCCCe
Confidence 7776543
No 266
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.45 E-value=0.029 Score=60.09 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=29.9
Q ss_pred HHhcCeEEEEEeCCCCcchhH--HHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 161 LRVLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 161 l~~aD~ailVvDa~~g~~~qt--~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+..+|.+++| |+..+..... .+.+..+...++|+++|+||+|+..
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 5778999876 5555432222 2233344568999999999999863
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.44 E-value=0.0041 Score=65.35 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++|+|++|+|||||+|.|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 479999999999999999995
No 268
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.39 E-value=0.034 Score=55.56 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=59.2
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHHHHHHHH
Q 004316 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQAR 217 (761)
Q Consensus 139 ~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~ 217 (761)
.+.+.|||||+... .....++..+|.+|+|+++...-...+...++.+...+.+. -+|+||.|..... ..++++.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 186 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAE 186 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHHH
Confidence 47899999998765 56678889999999999987655555666777777777664 6788999865332 3355566
Q ss_pred HHhCCc
Q 004316 218 SKLRHH 223 (761)
Q Consensus 218 ~~l~~~ 223 (761)
+.++..
T Consensus 187 ~~~~~~ 192 (237)
T 1g3q_A 187 DVMEVP 192 (237)
T ss_dssp HHHCSC
T ss_pred HHhCcc
Confidence 666654
No 269
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.22 E-value=0.019 Score=60.28 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++++|++|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 270
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=95.21 E-value=0.045 Score=46.61 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=57.7
Q ss_pred EEEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCeE---EecCcEEEEecCceeecceecCCCEEEEe--cc-ccccC
Q 004316 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKK---IKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV-DCASG 448 (761)
Q Consensus 376 ~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~G 448 (761)
-|-.++..+. |.+|-++|.+|.++.+..+.+.+.|.. -++..|. +....|+++.+|.=|+|. +. |.+.|
T Consensus 10 eVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~l~~~~dik~G 85 (99)
T 1d1n_A 10 EVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKEG 85 (99)
T ss_dssp EECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSSC
T ss_pred EEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhc----ccccccceECCCcEEEEEEcCcCCCCCC
Confidence 3444454555 999999999999999999999998853 2566665 556689999999999874 44 88999
Q ss_pred ceee
Q 004316 449 DTFT 452 (761)
Q Consensus 449 dtL~ 452 (761)
|.|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9874
No 271
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.56 E-value=0.19 Score=49.51 Aligned_cols=94 Identities=9% Similarity=0.034 Sum_probs=59.9
Q ss_pred cCeEEEEEeCCCCCC--c---HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEE-EEEeCCCCCCCChHH
Q 004316 138 KDYQINIIDTPGHVD--F---TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWK 211 (761)
Q Consensus 138 ~~~~i~liDTPG~~~--f---~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 211 (761)
+++.+.||||||... . .....-+-...+.+|+|+++..+-..++...++.+...+++++ +|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 358999999998643 1 1111111122245888888865544556666677777788864 788999975444567
Q ss_pred HHHHHHHHhCCceeeeeecCC
Q 004316 212 VLDQARSKLRHHCAAVQVPMG 232 (761)
Q Consensus 212 ~~~~i~~~l~~~~~~~~~pi~ 232 (761)
..+.+.+.++.+... .+|..
T Consensus 187 ~~~~l~~~~~~~vl~-~Ip~~ 206 (224)
T 1byi_A 187 YMTTLTRMIPAPLLG-EIPWL 206 (224)
T ss_dssp HHHHHHHHSSSCEEE-EECCC
T ss_pred HHHHHHHHcCCCEEE-ECCCC
Confidence 778888888765542 45543
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.50 E-value=0.016 Score=62.15 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..++|+|++|+|||||+|.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999999963
No 273
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.46 E-value=0.28 Score=52.38 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=47.8
Q ss_pred cCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCC-C---------hHHHHHHHHHHhCCceeeeeecC
Q 004316 164 LDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA-D---------PWKVLDQARSKLRHHCAAVQVPM 231 (761)
Q Consensus 164 aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~-~---------~~~~~~~i~~~l~~~~~~~~~pi 231 (761)
.+++++|.-+..-....+.+.+..+.+.++|+ -+|+|++..... . ....++++.+.++..+. ..+|+
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l-~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVI-AYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEE-EEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcE-EEecC
Confidence 47899999888777788889999999999998 678899986532 1 23456666666654432 34443
No 274
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.15 E-value=0.013 Score=65.44 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=56.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEeecCeEEEEEeCCCCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 151 (761)
-.+|+++|.+|+||||+..+|....+.... +.. ....|....+ ..|. .....++|+.|..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~----~t~---~~~~d~~r~~-~~g~------------~~~~~ifd~~g~~ 98 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV----PTR---EFNVGQYRRD-MVKT------------YKSFEFFLPDNEE 98 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEE---EEEHHHHHHH-HHCS------------CCCGGGGCTTCHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC----Cce---EEecchhhhh-hccC------------CCcccccCCCCHH
Confidence 357999999999999999999654321000 000 0000000000 0010 0123467888873
Q ss_pred Cc--HHHH--------HHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEE
Q 004316 152 DF--TVEV--------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAF 198 (761)
Q Consensus 152 ~f--~~~~--------~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiv 198 (761)
.| ...+ ..++..+++.++|+|++..-..+-...+..+.+.+.+++.+
T Consensus 99 ~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 99 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 22 2222 34455578889999998763333333344556666665443
No 275
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.65 E-value=0.036 Score=58.06 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++++|++|+|||||++.|+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 368999999999999999995
No 276
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.61 E-value=0.22 Score=54.64 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCce---eeee---eccCCcccccccChhhhhhhcceeeeceEEEee---cCe
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIH---EIHE---VRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDY 140 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i~---~~~~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~ 140 (761)
..+.-|+|+|..++|||+|+|.|+...+.-. -.+. ...+... ... ..-..+||-+-........ .+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~---~~~-~~~~TkGIWmw~~p~~~~~~~g~~~ 140 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSW---RGG-SERETTGIQIWSEIFLINKPDGKKV 140 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCC---CCS-SSCCCCSEEEESSCEEEECTTSCEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCcee---CCC-CCCcCceEEEecCcccccCCCCCee
Confidence 4678899999999999999997764321000 0000 0011000 000 0111256655444433322 236
Q ss_pred EEEEEeCCCCCCcH-----HHHHHHHH--hcCeEEEEEeCCCCcchhHHHHHHHHH
Q 004316 141 QINIIDTPGHVDFT-----VEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMR 189 (761)
Q Consensus 141 ~i~liDTPG~~~f~-----~~~~~al~--~aD~ailVvDa~~g~~~qt~~~~~~~~ 189 (761)
.+.|+||.|..+-. ...+-++. .++..|+ .....+..+....+....
T Consensus 141 ~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~Iy--N~~~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 141 AVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVY--NLSQNVQEDDLQHLQLFT 194 (457)
T ss_dssp EEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEE--EEESSCCHHHHHHHHHHH
T ss_pred EEEEEeccCCCCcccCccccHHHHHHHHHHhhheee--cccccCCHHHHHHHHHHH
Confidence 79999999975431 22334443 4555544 444455666666555443
No 277
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.55 E-value=0.36 Score=50.82 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=43.7
Q ss_pred CeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCC-C---------hHHHHHHHHHHhCCc
Q 004316 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA-D---------PWKVLDQARSKLRHH 223 (761)
Q Consensus 165 D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~-~---------~~~~~~~i~~~l~~~ 223 (761)
+++++|+-+..-....+.+.+..+...++|+ -+|+|++.-... . ..+.++++.+.++..
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 292 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDK 292 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5889999887777778889999999999998 678899876532 1 124556666666543
No 278
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=93.29 E-value=0.064 Score=43.65 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=54.2
Q ss_pred EEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEE
Q 004316 669 MLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEF 732 (761)
Q Consensus 669 ~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~ 732 (761)
....+.++-..+|+|...|.+..+.|.+.+..+ .+.+...+|..+.-.|...|..+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~-~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQA-FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE-EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccC-eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 356788999999999999999999999998744 588999999999999999999999999753
No 279
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.23 E-value=0.045 Score=52.54 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+++|+|++|+|||||++.|+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976543
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.04 E-value=0.043 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.++|+|++|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999754
No 281
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.04 E-value=0.28 Score=43.20 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=54.6
Q ss_pred EEEeeeeccCcc---EEEEEEEcceecCCCEEEecCCCeEE---ecCcEEEEecCceeecceecCCCEEEEe--cc--cc
Q 004316 376 LAFKLEEGRFGQ---LTYLRIYEGVIRKGDFIINVNTGKKI---KVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV--DC 445 (761)
Q Consensus 376 ~V~k~~~~~~G~---l~~~RV~sG~l~~g~~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~ 445 (761)
.+|++-. .|+ +|-++|.+|.++.+..+.+.+.+... ++..|. +....|+++.+|.=|+|. +. |.
T Consensus 17 ~vF~isk--~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~l~~fniDi 90 (120)
T 2crv_A 17 ATFTVTE--GKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK----HHKDDISVIKTGMDCGLSLDEEKVEF 90 (120)
T ss_dssp EEEEEEE--TTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE----SSSSCCSEECTTCEEEEECSCTTSCC
T ss_pred EEEEeCC--CCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc----ccccccceecCCCEEEEEEccCCCCC
Confidence 4454432 266 99999999999999999999988543 566655 556789999999999974 33 67
Q ss_pred ccCceee
Q 004316 446 ASGDTFT 452 (761)
Q Consensus 446 ~~GdtL~ 452 (761)
+.||+|-
T Consensus 91 k~GDiIE 97 (120)
T 2crv_A 91 KPGDQVI 97 (120)
T ss_dssp CTTEEEE
T ss_pred CCCCEEE
Confidence 8999884
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.97 E-value=0.051 Score=52.00 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+-++|+|++|+|||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
No 283
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.75 E-value=1.1 Score=47.33 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=42.7
Q ss_pred CeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC---CC---------hHHHHHHHHHHhCC
Q 004316 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG---AD---------PWKVLDQARSKLRH 222 (761)
Q Consensus 165 D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~---~~---------~~~~~~~i~~~l~~ 222 (761)
+.+++|..+..-....+.+.+..+.+.++|+ -+|+|++.-+. .+ ..+.++++.+.+..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~ 293 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDE 293 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccC
Confidence 4788888887766777889999999999998 77889987431 11 12556777777754
No 284
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.67 E-value=0.65 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+-..|+++|.+|+||||+...|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998643
No 285
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=92.33 E-value=0.19 Score=54.79 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=55.6
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcc-------hhHHHHHHHHHHcCCC-----EEEEEeCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVP-----RLAFINKLDRM 205 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p-----~iiviNK~D~~ 205 (761)
+++.+.|||||+... ..+..++..+|.+|+|+.+..-.. ......++.+...+.+ ++.++|+.|..
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~ 323 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK 323 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc
Confidence 358899999999775 457778899999999998753211 1222344455555443 35688999832
Q ss_pred CCChHHHHHHHHHHhCCceeeeeec
Q 004316 206 GADPWKVLDQARSKLRHHCAAVQVP 230 (761)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~p 230 (761)
.......+.+.+.++.......+|
T Consensus 324 -~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 324 -RDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp -HHHHHHHHHHHHHHTTSEECCC--
T ss_pred -hhHHHHHHHHHHHhhHhhhceeCC
Confidence 123455677888888765444455
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.29 E-value=0.061 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-++|+|+.|||||||++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999754
No 287
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.20 E-value=0.43 Score=52.20 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
..+-|+++|.+|+||||+..+|....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999996443
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.02 E-value=0.11 Score=49.02 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
-..|+|+|++|+||||+.+.|....|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 357999999999999999998765454
No 289
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.97 E-value=0.1 Score=50.94 Aligned_cols=26 Identities=8% Similarity=0.181 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
+-+-|+|+|++|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45679999999999999999998654
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.96 E-value=0.093 Score=49.17 Aligned_cols=25 Identities=12% Similarity=-0.114 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
No 291
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.95 E-value=0.077 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
..++|+|++|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999997653
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.91 E-value=0.093 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-..|+|+|++|+|||||++.|..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999954
No 293
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.82 E-value=0.08 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.-++|+|+.|||||||++.|...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999754
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.82 E-value=0.091 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.+|+|+|++|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.55 E-value=0.11 Score=50.42 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGRI 99 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~i 99 (761)
.-..|+|+|.+|+|||||++.|....|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 34579999999999999999997655543
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.47 E-value=0.12 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
++-++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999753
No 297
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.42 E-value=0.11 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+-..|+|+|++|+|||||++.|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.33 E-value=0.097 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..++|+|+.|+|||||++.|+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45999999999999999999754
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.26 E-value=0.11 Score=51.08 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCc
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGRI 99 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~i 99 (761)
+|.|+|+|||||+|....|...-|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 58899999999999999998776653
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.25 E-value=0.11 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998653
No 301
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.16 E-value=0.13 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
..|+|+|.+|+||||+.+.| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 36899999999999999999 55443
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.16 E-value=0.1 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.4
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
--++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999999863
No 303
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.09 E-value=0.98 Score=43.87 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.++|+|++|+|||||+..|+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.02 E-value=0.14 Score=48.68 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+++.++|+|..|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999974
No 305
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.94 E-value=0.11 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
-.-++|+|+.|+|||||++.|+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4569999999999999999997643
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.90 E-value=0.14 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
-+-|+|+|++|+|||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4569999999999999999997643
No 307
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.80 E-value=0.12 Score=48.41 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..++++|+.|+|||||++.|+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999754
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.75 E-value=0.16 Score=49.25 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.++|+|+|.+|+||||+...|....|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999976544
No 309
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.67 E-value=2.4 Score=44.92 Aligned_cols=57 Identities=18% Similarity=-0.000 Sum_probs=42.2
Q ss_pred CeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCC-C---Ch---------HHHHHHHHHHhC
Q 004316 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG-A---DP---------WKVLDQARSKLR 221 (761)
Q Consensus 165 D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~-~---~~---------~~~~~~i~~~l~ 221 (761)
+.+++|..+..-....+.+.+..+...++|+ -+|+|++.-.. . .+ .+.++++.+.++
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~ 302 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE 302 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHcc
Confidence 5788888887766777888999999999998 78889987643 1 11 245666777664
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.59 E-value=0.16 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976544
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.56 E-value=0.15 Score=48.94 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.++++|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999964
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.54 E-value=0.16 Score=49.61 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-..|+|+|+.|+|||||++.|...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999654
No 313
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.54 E-value=0.14 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..|+|+|++|+|||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998653
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.41 E-value=0.14 Score=49.94 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
.-+.|+|+|++|+|||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34569999999999999999998654
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.40 E-value=0.15 Score=49.51 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
.+.|+|+|.+|+||||+++.|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999765443
No 316
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.37 E-value=0.17 Score=50.98 Aligned_cols=28 Identities=32% Similarity=0.204 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCc
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGRI 99 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~i 99 (761)
...|+|+|++|+|||||++.|...-|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3579999999999999999997555553
No 317
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.37 E-value=0.17 Score=51.58 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++|+|+.|+|||||++.|+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999994
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.24 E-value=0.36 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-+.|.|.+|+|||||+-.++..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999888654
No 319
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.12 E-value=0.087 Score=50.19 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..++|+|++|+|||||++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.02 E-value=0.16 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 321
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.94 E-value=0.14 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 469999999999999999983
No 322
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=89.92 E-value=7.4 Score=39.09 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=45.2
Q ss_pred CeEEEEEeCCCCC-----Cc-HHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCC
Q 004316 139 DYQINIIDTPGHV-----DF-TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLD 203 (761)
Q Consensus 139 ~~~i~liDTPG~~-----~f-~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D 203 (761)
++++.+||+||-. +. .....-+-....-+|+|+|+..|-..++...++.+...++++ =+++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 4789999999752 11 112222333456789999998876677777777777888887 56779985
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.82 E-value=0.24 Score=47.95 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
+.+.|+|+|.+|+||||+...|....|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4568999999999999999999765553
No 324
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.80 E-value=0.16 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999983
No 325
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.76 E-value=0.2 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..|+|+|++|+||||+.+.|...-|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975544
No 326
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.76 E-value=0.17 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.+|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999965
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.73 E-value=0.18 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.64 E-value=0.19 Score=47.93 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.|+|.|.+|+||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 329
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.62 E-value=0.21 Score=47.14 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.|+++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999976543
No 330
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.56 E-value=0.22 Score=47.27 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.++|+|+|.+|+||||+...|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999975544
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.40 E-value=0.22 Score=48.01 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+|+|+|.+|+||||+++.|...-+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999976544
No 332
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.37 E-value=0.18 Score=50.86 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999994
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.37 E-value=0.22 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=21.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
+|+|+|.+|+||||+.+.|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765553
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.37 E-value=0.27 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999998765
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.36 E-value=0.25 Score=49.73 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
-..|+|+|+.|+|||||++.|...-|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34699999999999999999876444
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.35 E-value=0.18 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-++++++|++|+|||||+.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 337
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.35 E-value=0.27 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
-..|+++|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999975544
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.34 E-value=0.25 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..|+++|.+|+||||+.+.|....|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975544
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.25 E-value=0.23 Score=48.60 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
+|+|+|.+|+||||+.+.|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999765543
No 340
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.20 E-value=0.55 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45689999999999999999764
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.19 E-value=0.21 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
++|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999976544
No 342
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.18 E-value=0.27 Score=47.00 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+-.+|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999655
No 343
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.06 E-value=0.2 Score=52.35 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+-..++|+|++|+|||||++.|+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3457999999999999999999743
No 344
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.04 E-value=0.17 Score=49.80 Aligned_cols=21 Identities=24% Similarity=-0.020 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.++|+|+.|+|||||++.|..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999964
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.92 E-value=0.23 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.++|+|+.|+|||||++.|+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999988653
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.78 E-value=0.3 Score=46.74 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.+.|+|+|.+|+||||+...|....|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999976544
No 347
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.75 E-value=2 Score=44.84 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=48.4
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHc----CCCE-EEEEeCCCCCCCChHHH
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY----EVPR-LAFINKLDRMGADPWKV 212 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~----~~p~-iiviNK~D~~~~~~~~~ 212 (761)
+.+.+.++|+||-..... ...++..||.+|+|+.+..--......+.+.+... +.++ -+++|+.+. ...
T Consensus 162 d~~D~v~iD~~~~~~~~~-~~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----~~~ 235 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----TDE 235 (314)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----CHH
T ss_pred hcCceEeeccCCcchhhh-hHhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-----hhH
Confidence 347899999997643221 12467889999999987531111122233333322 3333 256787553 244
Q ss_pred HHHHHHHhCCceeeeeecC
Q 004316 213 LDQARSKLRHHCAAVQVPM 231 (761)
Q Consensus 213 ~~~i~~~l~~~~~~~~~pi 231 (761)
++++.+.++.... -.+|.
T Consensus 236 v~~~a~~~~~~~l-g~IP~ 253 (314)
T 3fwy_A 236 VDRFCKETNFRRL-AHMPD 253 (314)
T ss_dssp HHHHHHHHTCCEE-EEECC
T ss_pred HHHHHHHhCCeEE-EEecC
Confidence 5677777765543 23443
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.72 E-value=0.19 Score=48.35 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.+.|+|+|.+|+||||+...|....|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976544
No 349
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.70 E-value=0.26 Score=47.80 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.+-..|+|+|.+|+|||||.+.|...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988643
No 350
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.68 E-value=0.23 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.-..++|+|+.|+|||||++.|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999874
No 351
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.65 E-value=0.15 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=15.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll 93 (761)
-..++|+|+.|||||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999997
No 352
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.64 E-value=0.2 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 369999999999999999993
No 353
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.63 E-value=0.2 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999983
No 354
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.63 E-value=0.2 Score=51.24 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++|+|+.|||||||++.|.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 469999999999999999993
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.63 E-value=0.28 Score=47.77 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
....|+|+|.+|+|||||++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999643
No 356
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.61 E-value=0.21 Score=50.53 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
No 357
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.56 E-value=0.21 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.199 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 369999999999999999993
No 358
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.55 E-value=0.2 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999993
No 359
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.51 E-value=0.21 Score=49.88 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++|+|+.|+|||||++.|+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999993
No 360
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.50 E-value=0.24 Score=47.22 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 361
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.48 E-value=1.4 Score=50.37 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred hhhccCCceEEEEEeCCCCChHHHHHHHH---HHcCCceeeeeeccCCcccccccChhhhhhhcceeeeceEEEe-----
Q 004316 65 WKESMERLRNIGISAHIDSGKTTLTERIL---FYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----- 136 (761)
Q Consensus 65 ~~~~~~~irnI~iiG~~~~GKSTL~~~Ll---~~~g~i~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----- 136 (761)
+.......+.+.+.|..|+||||+.-+|. ...|.-.-.-+.+...++....+........-+.-........
T Consensus 1 ~~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~ 80 (589)
T 1ihu_A 1 MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQA 80 (589)
T ss_dssp CGGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHH
T ss_pred CCCCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHH
Q ss_pred ----------------------------------------------------ecCeEEEEEeCC----------------
Q 004316 137 ----------------------------------------------------WKDYQINIIDTP---------------- 148 (761)
Q Consensus 137 ----------------------------------------------------~~~~~i~liDTP---------------- 148 (761)
...+.+.+||||
T Consensus 81 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~ 160 (589)
T 1ihu_A 81 AAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWS 160 (589)
T ss_dssp HHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHHHhHHHHH
Q ss_pred -----------------CCCCcHHHHHHHHH-hcC----eEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCC
Q 004316 149 -----------------GHVDFTVEVERALR-VLD----GAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLD 203 (761)
Q Consensus 149 -----------------G~~~f~~~~~~al~-~aD----~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D 203 (761)
|..++......... .+| .+++|+.+.......+...++.+...++++ -+|+|+++
T Consensus 161 ~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 161 SFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp CCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
No 362
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.48 E-value=0.91 Score=45.43 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=56.5
Q ss_pred eeeeEEEEEeecccchhhHHHHHhcCCceeeccccc-CCeEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004316 665 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 734 (761)
Q Consensus 665 lEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 734 (761)
----|++.|.+|.++.+.+++.|.+- |.|...+.. ++.+.+.+.+|---.-.+.+.|++.|+|+|.+..
T Consensus 181 ~ra~m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~v 250 (252)
T 2wbm_A 181 KFEKVRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETRL 250 (252)
T ss_dssp EECEEEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEEE
T ss_pred eEeeEEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 33458889999999999999999654 788777655 4678888999988777889999999999997653
No 363
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.44 E-value=0.3 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.|+|+|.+|+||||+...|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976544
No 364
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.42 E-value=0.22 Score=49.25 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll 93 (761)
.++|+|+.|+|||||++.|+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999983
No 365
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.39 E-value=2.2 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..++.+.|++|+||||++..+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 358999999999999999998654
No 366
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.38 E-value=0.22 Score=49.67 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++|+|++|+|||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999886
No 367
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.33 E-value=0.23 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll 93 (761)
--.++|+|+.|+|||||++.|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3469999999999999999994
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.31 E-value=0.22 Score=50.38 Aligned_cols=21 Identities=48% Similarity=0.558 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 369999999999999999983
No 369
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.28 E-value=0.22 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999983
No 370
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.23 E-value=0.31 Score=45.63 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
...||+|.|.+|+||||+...|....|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999865444
No 371
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.22 E-value=0.25 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+++-++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5778999999999999999999854
No 372
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.16 E-value=0.34 Score=46.85 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
-..|+|+|.+|+||||+...|....|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999976544
No 373
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.10 E-value=0.25 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.-++|+|++|+|||||+..|+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 374
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.09 E-value=0.3 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.+-..|+|+|+.|+|||||++.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999998854
No 375
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.03 E-value=1.2 Score=47.70 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=28.9
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG 175 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~ 175 (761)
..+.+.|||||... ...+..++..||.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc
Confidence 46899999999543 3567788899999999998754
No 376
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.01 E-value=0.23 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll 93 (761)
-..++|+|+.|+|||||++.|.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHH
Confidence 3468999999999999999983
No 377
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.00 E-value=0.24 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.93 E-value=0.39 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.+.|+|+|.+|+||||+...|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976544
No 379
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=87.93 E-value=0.71 Score=49.99 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=57.1
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCcchhH-------HHHHHHHHHcCC--C---EEEEEeCCCCC
Q 004316 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS-------ITVDRQMRRYEV--P---RLAFINKLDRM 205 (761)
Q Consensus 138 ~~~~i~liDTPG~~~f~~~~~~al~~aD~ailVvDa~~g~~~qt-------~~~~~~~~~~~~--p---~iiviNK~D~~ 205 (761)
+++.+.|||||+... ..+..++..+|.+|+|+.+..-....+ ...++.+...+. + ++.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 358999999999875 346778889999999998753211111 223344444443 3 35577887742
Q ss_pred CCChHHHHHHHHHHhCCceeeeeecC
Q 004316 206 GADPWKVLDQARSKLRHHCAAVQVPM 231 (761)
Q Consensus 206 ~~~~~~~~~~i~~~l~~~~~~~~~pi 231 (761)
.......+++.+.++.......+|.
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP~ 345 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLPR 345 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEEC
T ss_pred -hhHHHHHHHHHHHhcccccceeccc
Confidence 1234567788888887655444553
No 380
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.89 E-value=0.39 Score=47.50 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=25.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI 99 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~i 99 (761)
.+.+.|.|+|+|||||+|....|...-|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 456778999999999999999998766653
No 381
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.83 E-value=1.3 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-||.+.|.+|+||||++-++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999776653
No 382
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.72 E-value=0.25 Score=50.04 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 358999999999999999983
No 383
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.72 E-value=0.27 Score=45.53 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-..++++|++|+|||||+..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999653
No 384
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.69 E-value=0.35 Score=47.80 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
...|+|+|.+|+||||+.+.|....|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999976554
No 385
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.66 E-value=0.36 Score=46.80 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..|+|.|.+|+||||+++.|...-+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999975433
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.64 E-value=0.25 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.60 E-value=0.29 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+|+|+|.+|+||||+...|....|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999976544
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.55 E-value=0.33 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-+.|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999643
No 389
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.51 E-value=0.41 Score=48.11 Aligned_cols=29 Identities=14% Similarity=-0.127 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
.+..+|+|+|.+|+||||++..|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35568999999999999999999765553
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.46 E-value=0.38 Score=47.32 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..+|+|+|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999976554
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.45 E-value=0.35 Score=48.87 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
-..|+|+|++|+||||+++.|...-|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 347999999999999999999755454
No 392
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.40 E-value=0.27 Score=50.50 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999983
No 393
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.33 E-value=0.27 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 369999999999999999983
No 394
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=87.32 E-value=1.7 Score=48.59 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=57.2
Q ss_pred EEeeeeccC-ccEEEEEEEcceecCCCEEEecCCCe---EEecCcEEEEecCceeecceecCCCEEEEe--cc-ccccCc
Q 004316 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK---KIKVPRLVRMHSNEMEDIQEAHAGQIVAVF--GV-DCASGD 449 (761)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~---~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~Gd 449 (761)
|-.++..+. |.++-++|..|++++|..+.+.+.|. .-+|..|. +...+|+++..|.=|+|. +. +.+.||
T Consensus 413 v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~----~~k~~v~e~~~g~ecgi~~~~~~~~~~gd 488 (501)
T 1zo1_I 413 VRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLR----RFKDDVNEVRNGMECGIGVKNYNDVRTGD 488 (501)
T ss_dssp EEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEE----ETTEEESEEETTCCEEEEBCCCTTCCTTC
T ss_pred EEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhc----ccCccccEECCCCEEEEEEcCcCCCCCCC
Confidence 445555555 99999999999999999999988875 33566665 455689999999999864 44 789999
Q ss_pred eeec
Q 004316 450 TFTD 453 (761)
Q Consensus 450 tL~~ 453 (761)
.|-.
T Consensus 489 ~~~~ 492 (501)
T 1zo1_I 489 VIEV 492 (501)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.21 E-value=0.39 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
No 396
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.21 E-value=0.27 Score=50.64 Aligned_cols=21 Identities=24% Similarity=0.128 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|+|||||++.|+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999983
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.20 E-value=0.31 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.115 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.|+|.|.+|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.16 E-value=0.41 Score=48.30 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.+...|+|.|.+|+||||+.+.|...-|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999998876444
No 399
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.13 E-value=0.38 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+|+|.|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976444
No 400
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.07 E-value=0.28 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll 93 (761)
.++|+|+.|+|||||++.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999993
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.04 E-value=0.38 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.117 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.+|+|+|.+|+||||+...|...-+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976554
No 402
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=87.02 E-value=0.9 Score=45.14 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=55.0
Q ss_pred eeEEEEEeecccchhhHHHHHhcCCceeecccccC-CeEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004316 667 PVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 734 (761)
Q Consensus 667 Pi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 734 (761)
--|++.|.+|.+|.+.+++.|.+ -|.|..++..+ |.+...+.+|-----.+.+.|++.|+|.|.+..
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 35788899999999999999954 46787776554 667888999988667789999999999998654
No 403
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.02 E-value=0.36 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+..-|+|+|++|||||||++.|...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999988643
No 404
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.02 E-value=0.34 Score=45.31 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999976544
No 405
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.91 E-value=0.4 Score=46.55 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+-..|+|+|.+|+|||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
No 406
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=86.83 E-value=0.24 Score=49.67 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=58.8
Q ss_pred eeEEEEEeecccchhhHHHHHhcCCceeecccccCCeEEEEEEechhhhhchHHHHhhhcCCeEEEEE
Q 004316 667 PVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTM 734 (761)
Q Consensus 667 Pi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 734 (761)
.-|++.|.+|.++.+.+++.|.+-.|.|.+.+..++ +.+.+.+|--..-.+.+.|+..|+|.|.+.+
T Consensus 172 a~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 172 AHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp ECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 457889999999999999999988899988877666 8889999998777899999999999998664
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.78 E-value=0.3 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-.+++|+|+.|+|||||++.|+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999964
No 408
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.60 E-value=0.36 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 409
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.54 E-value=0.4 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-..|+|.|.+|+||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 410
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.52 E-value=0.38 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHc
Q 004316 74 NIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
-.+|+|+.|+|||||+++|.+.-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997643
No 411
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.51 E-value=0.42 Score=48.35 Aligned_cols=26 Identities=31% Similarity=0.100 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
+.|+|+|++|+|||||...|....+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCC
Confidence 36899999999999999999766553
No 412
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.48 E-value=0.44 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.032 Sum_probs=21.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.+...|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998854
No 413
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.43 E-value=0.34 Score=45.79 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..|+|.|.+|+||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999965444
No 414
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=86.42 E-value=2.2 Score=42.34 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=59.9
Q ss_pred cCeEEEEEeCCCCC-----CcHHHHHHHHHhcCeEEEEEeCCCCcchhHHHHHHHHHHcCCCE-EEEEeCCCCCCCChHH
Q 004316 138 KDYQINIIDTPGHV-----DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWK 211 (761)
Q Consensus 138 ~~~~i~liDTPG~~-----~f~~~~~~al~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~ 211 (761)
.++.+.+||+||.. +......-+-....-+|+|+++..+-..++...++.+...++++ =+++|+++........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46889999999742 11111222223345689999998877777777777778889987 5788999865444566
Q ss_pred HHHHHHHHhCCce
Q 004316 212 VLDQARSKLRHHC 224 (761)
Q Consensus 212 ~~~~i~~~l~~~~ 224 (761)
..+.+.+.++.++
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 7788888777654
No 415
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.34 E-value=0.34 Score=51.89 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 468999999999999999984
No 416
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.18 E-value=0.41 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-.|+|+|+.|+|||||++.|+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999864
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.13 E-value=0.36 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
--++|+|+.|||||||++.|.
T Consensus 31 e~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 358999999999999999994
No 418
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.00 E-value=0.49 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 469999999999999999884
No 419
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.97 E-value=0.47 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.++++|++|+|||||++++....+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5699999999999999999976544
No 420
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.94 E-value=0.23 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999653
No 421
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.94 E-value=0.47 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.+-..|+|+|+.|+|||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999998653
No 422
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.93 E-value=0.49 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
+...|.++|.+|+||||+...|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997653
No 423
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.91 E-value=0.42 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
-.+|+|+|.+|+||||+.+.|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999976544
No 424
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.86 E-value=0.43 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..|+++|.+|+||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988643
No 425
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.80 E-value=0.29 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.+++|+|+.|+|||||++.|+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999964
No 426
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.79 E-value=0.39 Score=49.01 Aligned_cols=20 Identities=40% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll 93 (761)
.++|+|+.|+|||||++.|+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999983
No 427
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.76 E-value=0.38 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll 93 (761)
-..++|+|+.|+|||||++.|+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3469999999999999999983
No 428
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.69 E-value=1.3 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.-+.|.|++|+|||||+-.++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHH
Confidence 35889999999999999888754
No 429
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.68 E-value=0.39 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999643
No 430
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.53 E-value=0.46 Score=48.27 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
...|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 431
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.48 E-value=1.4 Score=40.16 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-.+|.|.|.+|+|||+++..+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 432
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.47 E-value=0.51 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..+++.|.|++|+|||+|+..+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999653
No 433
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.44 E-value=0.5 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 434
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.38 E-value=0.36 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-..++|+|+.|+|||||++.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999654
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.31 E-value=0.58 Score=46.50 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+..+|+|+|.+|+||||+...|...-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999976554
No 436
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.24 E-value=0.79 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-+.+.|.|.+++|||||+-.++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988754
No 437
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.23 E-value=0.41 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999994
No 438
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.22 E-value=0.47 Score=51.05 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.-..|+|+|+.|+|||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999974
No 439
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=85.11 E-value=2.1 Score=48.23 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=56.6
Q ss_pred EEEEEeeeecc----CccEEEEEEEcceecCCCEEEecCCCeEE---ecCcEEEEecCceeecceecCCCEEEEe--c-c
Q 004316 374 VALAFKLEEGR----FGQLTYLRIYEGVIRKGDFIINVNTGKKI---KVPRLVRMHSNEMEDIQEAHAGQIVAVF--G-V 443 (761)
Q Consensus 374 ~~~V~k~~~~~----~G~l~~~RV~sG~l~~g~~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdIv~i~--g-l 443 (761)
.+-|-+++..+ .|.++-++|.+|++++|..+.+.+.|... ++..|. +....|+++.+|.=|+|. + .
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk----~~k~~v~ev~~g~ecgi~~~~~~ 524 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK----HHKDDTSVVKTGMDCGLSLDEEK 524 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC----CSSCCCSEEETTCEEEEESSSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc----ccCcccceEcCCCEEEEEEcCcc
Confidence 34444444433 37899999999999999999999988643 444443 566789999999999974 5 5
Q ss_pred -ccccCceee
Q 004316 444 -DCASGDTFT 452 (761)
Q Consensus 444 -~~~~GdtL~ 452 (761)
|.+.||+|-
T Consensus 525 ~~~~~gd~ie 534 (537)
T 3izy_P 525 IEFKVGDAII 534 (537)
T ss_dssp SSCSCCCEEE
T ss_pred cCCCCCCEEE
Confidence 789999873
No 440
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.08 E-value=0.42 Score=51.07 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 358999999999999999994
No 441
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.03 E-value=0.53 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
+.+.++|++|+|||||++.+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997543
No 442
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.00 E-value=0.29 Score=51.14 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll 93 (761)
-..++|+|+.|+|||||++.|+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHH
Confidence 3479999999999999999884
No 443
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.92 E-value=0.47 Score=47.96 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
....|+++|.+|+||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446899999999999999999976543
No 444
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.77 E-value=0.56 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll 93 (761)
.+...|+|.|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999986
No 445
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.73 E-value=0.45 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 358999999999999999994
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.67 E-value=0.58 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.052 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+|+|.|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
No 447
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.64 E-value=3.4 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..+.+.|.|++|+|||||+.++....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 347899999999999999999987654
No 448
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.62 E-value=0.45 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 30 e~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 358999999999999999994
No 449
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.59 E-value=0.73 Score=49.04 Aligned_cols=24 Identities=33% Similarity=0.212 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-+.+.|.|++++|||||+-.++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888743
No 450
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.53 E-value=0.46 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 358999999999999999994
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.52 E-value=0.55 Score=43.36 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-.+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999753
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.42 E-value=0.64 Score=45.61 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.+|+|+|.+|+||||+...|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976554
No 453
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.41 E-value=0.71 Score=44.62 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
....|+|+|.+|+||||+.+.|....|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999998875534
No 454
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.40 E-value=0.47 Score=50.98 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
..++|+|+.|||||||++.|.
T Consensus 38 e~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHH
Confidence 468999999999999999994
No 455
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.31 E-value=0.4 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.-.+++|+|+.|||||||+++|+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344799999999999999999964
No 456
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.26 E-value=0.74 Score=45.70 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=29.7
Q ss_pred CeEEEEEeCCCCcchhHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 004316 165 DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (761)
Q Consensus 165 D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~iiviNK~D~~~ 206 (761)
+.-+++||-.+-......+.++.+...++|+|++.-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 456888897765554555556665667999999988888654
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.26 E-value=0.7 Score=46.00 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=23.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 69 MERLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 69 ~~~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
..+-..|+|+|.+|+||||+.+.|...-|
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556899999999999999999876545
No 458
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.21 E-value=2.3 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
...+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999653
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=84.02 E-value=2.3 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-..|+++|.+|+||||+...|...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999643
No 460
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.57 E-value=0.66 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..++|+|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 461
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.27 E-value=3 Score=43.54 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
...++|.|.|++|+|||+|+..+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999999654
No 462
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.20 E-value=0.66 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
--.|+|+|+.|+|||||++.|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999754
No 463
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.18 E-value=0.71 Score=47.18 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
+.++|+|++|+|||||+..+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 469999999999999999997543
No 464
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.18 E-value=0.67 Score=48.92 Aligned_cols=27 Identities=26% Similarity=0.159 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
...+++++|++|+|||||++.+....+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 346799999999999999999976554
No 465
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.09 E-value=0.66 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+-..|+|+|.+|+||||+...|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.00 E-value=0.78 Score=45.84 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTGR 98 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g~ 98 (761)
..|+|.|++|+||||+.+.|....|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999755443
No 467
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.88 E-value=4.2 Score=42.05 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..++|.|.|++|+|||+|+.++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.87 E-value=0.56 Score=46.56 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+-..|+|.|..|+|||||++.|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999988544
No 469
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.86 E-value=0.8 Score=51.32 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
.-+.|.|.+|+|||||+-.++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHH
Confidence 357899999999999999887643
No 470
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.69 E-value=0.41 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 358999999999999999994
No 471
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.55 E-value=0.66 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998653
No 472
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.52 E-value=0.79 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+++.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998653
No 473
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.36 E-value=0.8 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 72 LRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
.++|.+.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4579999999999999999997554
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.18 E-value=0.84 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004316 74 NIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
.|+|.|.+|+||||+.+.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999976544
No 475
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.07 E-value=0.76 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.-++|+|++|+|||||+..|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 476
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.96 E-value=0.82 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
..+++.|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998653
No 477
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.92 E-value=1 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.262 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.+.|.|++++|||||+-.++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 46889999999999999988754
No 478
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.67 E-value=0.72 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004316 74 NIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 74 nI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-++|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999753
No 479
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.66 E-value=1 Score=44.67 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
+-..|+|.|.+|+||||+++.|...-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999997543
No 480
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.41 E-value=35 Score=34.94 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-.+|.|.|.+|+|||+++..+...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHHh
Confidence 357999999999999999998654
No 481
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.24 E-value=0.41 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERIL 93 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll 93 (761)
-.++|+|+.|||||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999984
No 482
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.13 E-value=0.79 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
-..++|+|+.|+|||||++.|+.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35699999999999999999874
No 483
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.04 E-value=1.5 Score=46.66 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
-+.+.|.|++++|||||+..++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.01 E-value=0.91 Score=48.82 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.-+.++|+|++|+|||||++.|...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4468999999999999999999754
No 485
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.54 E-value=8.5 Score=40.16 Aligned_cols=21 Identities=10% Similarity=0.002 Sum_probs=18.1
Q ss_pred EEEEeCCCCChHHHHHHHHHH
Q 004316 75 IGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 75 I~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+-|.|++++|||||+-.++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998877643
No 486
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=80.37 E-value=0.99 Score=47.98 Aligned_cols=24 Identities=38% Similarity=0.306 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
-.++|+|+.|+|||||++.|+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997654
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.16 E-value=0.91 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+.|.|+|.+|+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999653
No 488
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.10 E-value=1.2 Score=47.34 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHH
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
.++++|+++|.+|+||||+...|...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 45679999999999999999988643
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.93 E-value=0.85 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..++|+|+.|+|||||++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999964
No 490
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.93 E-value=0.95 Score=44.75 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..++|+|++|+|||||+..|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999999975
No 491
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.83 E-value=5.9 Score=43.48 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
.+++++.|.|++|+|||||+..+....
T Consensus 48 ~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 356799999999999999999997654
No 492
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.70 E-value=4.5 Score=52.39 Aligned_cols=27 Identities=33% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 70 ERLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 70 ~~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
.+-++|.+.|++|+|||+|+-++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999997643
No 493
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.83 E-value=1.3 Score=46.41 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 494
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=78.51 E-value=0.98 Score=44.14 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004316 73 RNIGISAHIDSGKTTLTERILFY 95 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~ 95 (761)
+++.+.|++|+||||++.+|+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.44 E-value=0.76 Score=46.57 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
+...|+|.|..|+||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=78.31 E-value=0.71 Score=47.78 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004316 72 LRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 72 irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
.+-|+|.|.+|+||||+++.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 497
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.90 E-value=1.3 Score=42.62 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHH
Q 004316 71 RLRNIGISAHIDSGKTTLTERILF 94 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~ 94 (761)
..+++.|.|++|+|||+|+..+..
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999864
No 498
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.79 E-value=1.3 Score=44.26 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc
Q 004316 71 RLRNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 71 ~irnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
..++|.+.|++|+|||+|+.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997543
No 499
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.75 E-value=1.3 Score=48.67 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004316 73 RNIGISAHIDSGKTTLTERILFYT 96 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~ 96 (761)
-.++|+|+.|+|||||++.|....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 469999999999999999997654
No 500
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.75 E-value=1.5 Score=46.40 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004316 73 RNIGISAHIDSGKTTLTERILFYTG 97 (761)
Q Consensus 73 rnI~iiG~~~~GKSTL~~~Ll~~~g 97 (761)
+.|+|+|++++|||||...|...-+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
Done!