BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004319
(761 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
PE +K+ ++ DDVV++ D++PK++ H+L+++R L + ++ +H +++ + +
Sbjct: 17 PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 75
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
G+ + E + +E + ++G+H+ PSM LHLH+++ D S LKN
Sbjct: 76 VQGDLSGLIFDEARNCLSQQLTNEALANYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 135
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
H+ SF + FF + G T SL +L+C RC + +LK+H+
Sbjct: 136 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 190
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
PE +K+ ++ DDVV++ D++PK++ H+L+++R L + ++ +H +++ + +
Sbjct: 17 PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 75
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
G+ + E + +E ++G+H+ PSM LHLH+++ D S LKN
Sbjct: 76 VQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 135
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
H+ SF + FF + G T SL +L+C RC + +LK+H+
Sbjct: 136 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 190
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
PE +K+ ++ DDVV++ D++PK++ H+L+++R L + ++ +H +++ + +
Sbjct: 19 PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 77
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
G+ + E + +E ++G+H+ PSM LHLH+++ D S LKN
Sbjct: 78 VQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 137
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
H+ SF + FF + G T SL +L+C RC + +LK+H+
Sbjct: 138 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 192
>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391
>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391
>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
pdb|3U7F|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctcp)
pdb|3U7H|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tccttp)
Length = 381
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 225 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 277
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + V
Sbjct: 278 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREXTDPSHAPVSDXV 336
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 337 XFSYRKQFEPPTLAEGFLEI 356
>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
pdb|3ZVM|B Chain B, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391
>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
pdb|1YJ5|B Chain B, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
Length = 383
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 227 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 279
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + V
Sbjct: 280 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 338
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 339 XFSYRKQFEPPTLAEGFLEI 358
>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctap)
Length = 379
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 223 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 275
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + V
Sbjct: 276 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 334
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 335 XFSYRKQFEPPTLAEGFLEI 354
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA---------S 72
LV+++G+ GSGKSTF + + + + C+ ++ ++ Q +T A S
Sbjct: 11 LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDEND---QTVTGAAFDVLHYIVS 67
Query: 73 SALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH----AVVLDLPAKLCISRSVKRIEH 128
L+ GK +D N++ R +++ D H AVV +LP K+C R+ R +
Sbjct: 68 KRLQLGKLTVVDATNVQESARKPLIEIAK---DYHCFPVAVVFNLPEKVCQERNKNRTDR 124
Query: 129 E 129
+
Sbjct: 125 Q 125
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAKSLYPG 407
GDIT+L +VI NAAN L GGGGV+ AI AAGPAL A + + P
Sbjct: 10 GDITKL------AVDVIVNAANPSLX-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
++ L P V+H +GP
Sbjct: 63 GHAVITLAGDLP------AKAVVHTVGP 84
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 230 QITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNG---------------SSS 274
++ +++ C G + +L D + V T P QN +++
Sbjct: 52 KVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAAN 111
Query: 275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
++AFP++ST + + A+++ ++ V EF+ +
Sbjct: 112 SYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITR 147
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTS-ASSAL 75
LV+++G+ GSGKSTF + + + + C+ D ++ +G L S L
Sbjct: 11 LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLXSDDENDQTVTGAAFDVLHYIVSKRL 70
Query: 76 KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH----AVVLDLPAKLCISRSVKRIEHE 129
+ GK +D N++ R ++ D H AVV +LP K+C R+ R + +
Sbjct: 71 QLGKLTVVDATNVQESARKPLIEXAK---DYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEV---ATAERAKSLYP 406
GD+ RL +V+ NA+N LK GG + AA+ AAGP L+ +R L P
Sbjct: 44 GDLARLPV------DVVVNASNEDLKHYGG-LAAALSKAAGPELQADCDQIVKREGRLLP 96
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRR-PNCL 445
GN+ I G+ HVIH +GP + P C+
Sbjct: 97 GNATISK-------AGKLPYHHVIHAVGPRWSGYEAPRCV 129
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEK--FLHED 640
D V+ NDL P A HILV+ + D L D+ ++ + I+ +H V K A++ F
Sbjct: 25 DRVLAFNDLNPVAPYHILVVPK-KHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTG 83
Query: 641 ASLAFRLGYHSAPSMRQLHLHVIS 664
+ G ++ LH H+++
Sbjct: 84 FRVINNCGSDGGQEVKHLHYHILA 107
>pdb|2ACF|A Chain A, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|B Chain B, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|C Chain C, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|D Chain D, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
Length = 182
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 365 VIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE 424
VI NAAN LK GGGV A+ A A++ + + K P + + + L G
Sbjct: 40 VIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGP-----LTVGGSCLLSGHN 93
Query: 425 GVTHVIHVLGPNMN 438
+HV+GPN+N
Sbjct: 94 LAKKCLHVVGPNLN 107
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 351 DITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL--EVATAERAKSLYPGN 408
DIT+L + I NAAN L GGGGV+ I AAGP L E T + K+
Sbjct: 70 DITKLEV------DAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKI 122
Query: 409 SVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ LP+ +VIH +GP
Sbjct: 123 TGGYRLPA----------KYVIHTVGP 139
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMR 42
EEK K ++ +VG PGSGK T CE +++
Sbjct: 3 EEKLKKSKIIFVVGGPGSGKGTQCEKIVQ 31
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMR 42
EEK K ++ +VG PGSGK T CE +++
Sbjct: 3 EEKLKKTNIIFVVGGPGSGKGTQCEKIVQ 31
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 349 VGDITRLYTGGGLC---CNVIANAANWRLKPGGGGVNAAIFSAAGPA---LEV---ATAE 399
VGDIT G + I NAAN RL+ GGG A + AG A E+ A E
Sbjct: 9 VGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ Y + +V P+ + G+ +V H +GP
Sbjct: 69 QFGRDYIDHGEVVVTPAMN--LEERGIKYVFHTVGP 102
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 349 VGDITRLYTGGGLC---CNVIANAANWRLKPGGGGVNAAIFSAAGPA---LEV---ATAE 399
VGDIT G + I NAAN RL+ GGG A + AG A E+ A E
Sbjct: 9 VGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ Y + +V P+ + G+ +V H +GP
Sbjct: 69 QFGRDYIDHGEVVVTPAMN--LEERGIKYVFHTVGP 102
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 349 VGDITRLYTGGGLC---CNVIANAANWRLKPGGGGVNAAIFSAAGPA------LEVATAE 399
VGDIT G + I NAAN RL+ GGG A + AG A + A E
Sbjct: 18 VGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAXRE 77
Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ Y + +V P+ + G+ +V H +GP
Sbjct: 78 QFGRDYIDHGEVVVTPAXN--LEERGIKYVFHTVGP 111
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 349 VGDITRLYTGGGLC---CNVIANAANWRLKPGGGGVNAAIFSAAGPA------LEVATAE 399
VGDIT G + I NAAN RL+ GGG A + AG A + A E
Sbjct: 9 VGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ Y + +V P+ + G+ +V H +GP
Sbjct: 69 QFGRDYIDHGEVVVTPAMN--LEERGIKYVFHTVGP 102
>pdb|2FAV|A Chain A, Crystal Structure Of Sars Macro Domain In Complex With
Adp- Ribose At 1.8 A Resolution
pdb|2FAV|B Chain B, Crystal Structure Of Sars Macro Domain In Complex With
Adp- Ribose At 1.8 A Resolution
pdb|2FAV|C Chain C, Crystal Structure Of Sars Macro Domain In Complex With
Adp- Ribose At 1.8 A Resolution
Length = 180
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 365 VIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE 424
VI NAAN LK GGGV A+ A A + + + K P + + + L G
Sbjct: 41 VIVNAANIHLK-HGGGVAGALNKATNGAXQKESDDYIKLNGP-----LTVGGSCLLSGHN 94
Query: 425 GVTHVIHVLGPNMN 438
+HV+GPN+N
Sbjct: 95 LAKKCLHVVGPNLN 108
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSL 404
+ GDI G VI NAAN + +PGGG V A++
Sbjct: 6 YHVVRGDIATATEG------VIINAANSKGQPGGG-VCGALYKK---------------- 42
Query: 405 YPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSL 463
+P + + P+ + H+IH +GPN N V+G + L +AY S+
Sbjct: 43 FPESFDLQPIEVGKARLVKGAAKHIIHAVGPNFNKVSE-------VEGDKQLAEAYESI 94
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WAR--ICQDTINKG 59
K KQ +++ VG GSGK+T C + R W IC DT G
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG 143
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 24/137 (17%)
Query: 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC------QDTINKGKSGTKVQCLT 69
+K K +V ++G PGSGK T C +++R W + Q+ + K G + +
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMI 59
Query: 70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE---------------VDVHAVV-LDL 113
+ +V L + ++ Q +F+ G P VD V+ D
Sbjct: 60 KNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC 119
Query: 114 PAKLCISRSVKRIEHEG 130
P ++ R +KR E G
Sbjct: 120 PEEVMTQRLLKRGESSG 136
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 20 QILVIMVGAPGSGKSTFCEHVMR 42
++ VI+VG+PGSGKST E + +
Sbjct: 24 RVCVILVGSPGSGKSTIAEELXQ 46
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen
Oxidase Reveals The Structural Basis Of Hereditary
Coproporphyria
Length = 346
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 372 WRLKPGGGGV-----NAAIFSAAGPALEVA----TAERAKSLYPGNSVIVPLPSTSPLCG 422
W K GGGG+ + +F AG ++ V + E AK + V+ P C
Sbjct: 73 WERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCA 132
Query: 423 REGVTHVIHVLGPN 436
GV+ VIH P+
Sbjct: 133 M-GVSSVIHPKNPH 145
>pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna
pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna
Length = 219
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 610 RLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL 643
RL+DVR L ILQ+ +G + AE+ L SL
Sbjct: 152 RLSDVREWQLYILQSFPGIGRRTAERILERFGSL 185
>pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix
pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix
pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix
pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix
Length = 214
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 610 RLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL 643
RL+DVR L ILQ+ +G + AE+ L SL
Sbjct: 145 RLSDVREWQLYILQSFPGIGRRTAERILERFGSL 178
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+I++GAPGSGK T CE + + K+GTK+ A S ++ G V
Sbjct: 8 LILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGL--EAKSIIESGNFV 64
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 157 FSRITLCQNENDVQAALDTYSGLGPLDTLPHGS--------FGQKNPDAKIQLGIMKFLK 208
F +T +N + + Y G D L H + Q P KI LG+ +
Sbjct: 222 FDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGN 281
Query: 209 KVDAPSNTG----STASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP 262
++G T P P +K L EI LS+ + +KG E+P
Sbjct: 282 AWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESP 339
>pdb|1RR9|A Chain A, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|B Chain B, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|C Chain C, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|D Chain D, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|E Chain E, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|F Chain F, Catalytic Domain Of E.Coli Lon Protease
Length = 200
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 524 CKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISD 583
C T N V D+ ++ L IG K + + +T + P +K DL EI D
Sbjct: 107 CLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGI-KTVLIPFENKRDLEEIPD 165
Query: 584 DVVVLNDLYP-KAQKHILVLS 603
+V+ D++P K + +L L+
Sbjct: 166 NVIADLDIHPVKRIEEVLTLA 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,001,569
Number of Sequences: 62578
Number of extensions: 965301
Number of successful extensions: 2456
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2417
Number of HSP's gapped (non-prelim): 45
length of query: 761
length of database: 14,973,337
effective HSP length: 106
effective length of query: 655
effective length of database: 8,340,069
effective search space: 5462745195
effective search space used: 5462745195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)