BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004319
(761 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140
PE=4 SV=1
Length = 912
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/740 (59%), Positives = 543/740 (73%), Gaps = 54/740 (7%)
Query: 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
E K KQI+V+++G PGSGKSTFC+ MRSS RPW+RICQD +N GK+GTK QCL A+
Sbjct: 221 EADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATD 280
Query: 74 ALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
+L++GKSVF+DRCNL+REQR++F+KLGGPE +VHAVVL+LPA++CISRSVKR HEGNLQ
Sbjct: 281 SLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQ 340
Query: 134 GGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQK 193
GG+AAAVVN+MLQ KELPK++EGFSRI C ++ DV A++ Y+ LGP+DTLP G FG+K
Sbjct: 341 GGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEK 400
Query: 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
D K Q GIMKF KKV A P+++ + A+ N+ + E+T+
Sbjct: 401 KLDTKSQPGIMKFFKKVSALPASSSNEAT--------------NTTRKADEMTA------ 440
Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
N V+ V + GS+ VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG
Sbjct: 441 --------NVRVSPV-KLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLG 491
Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
ARLVLVDL++GSKILSLV+AKA+QK+I+ KFFTFVGDIT+L + GGL CNVIANA NW
Sbjct: 492 TARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW 551
Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
RLKPGGGGVNAAIF AAGP LE AT RA +L PG +V+VPLPST PL EG+THVIHV
Sbjct: 552 RLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHV 611
Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
LGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K R +
Sbjct: 612 LGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPK------RSSQTAV 665
Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVS 552
D ED IK D E++KK K + NL + D G
Sbjct: 666 SDSGED-----------IKEDS----ERNKKYKGSQDKAVTNNLESES--LEDTRGSGKK 708
Query: 553 TSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA 612
SK W +WA AL+ AM+PERH++ +LE D++VV+ND YPKA+KH+LVL+R + LD L
Sbjct: 709 MSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPKARKHVLVLARQESLDGLE 768
Query: 613 DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHL 672
DVR E+LQ+LQ MH VG+KW ++F +EDASL FRLGYHS PSMRQLHLHVISQDFNS L
Sbjct: 769 DVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFNSDSL 828
Query: 673 KNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKS 732
KNKKHWNSF T+FF DSVDVLEE+++ GKA + D LL ELRC+RCRSAHP+IP+LKS
Sbjct: 829 KNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASED-LLKGELRCNRCRSAHPNIPKLKS 887
Query: 733 HISSCRAPFPSSLLENGRLM 752
H+ SC + FP LL+N RL+
Sbjct: 888 HVRSCHSQFPDHLLQNNRLV 907
>sp|Q7TQC5|APTX_MOUSE Aprataxin OS=Mus musculus GN=Aptx PE=2 SV=2
Length = 342
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 11/197 (5%)
Query: 541 NLSADNEKIGVSTSKAWGSWAQALYRTAMYPER--HKDDLLEISDDVVVLNDLYPKAQKH 598
++S +K G + ++ G W+Q L + P+ +KDD VVV+ D YPKA+ H
Sbjct: 148 SVSPKKDKNGATKKESLGHWSQGLKMSMKDPKMQVYKDD------QVVVIKDKYPKARHH 201
Query: 599 ILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQL 658
LVL + + L V +EHL++L+ MHAVG K F + L FRLGYH+ PSM +
Sbjct: 202 WLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFA-GSSKLRFRLGYHAIPSMSHV 259
Query: 659 HLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYD-SLLSMELRC 717
HLHVISQDF+S LKNKKHWNSFNT +F +S V++ + G+ T+KD LL + LRC
Sbjct: 260 HLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAGRVTVKDGTCELLKLPLRC 319
Query: 718 HRCRSAHPSIPRLKSHI 734
H C+ PSIP+LK H+
Sbjct: 320 HECQQLLPSIPQLKEHL 336
>sp|P61797|APTX_CANFA Aprataxin OS=Canis familiaris GN=APTX PE=2 SV=1
Length = 342
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 135/230 (58%), Gaps = 18/230 (7%)
Query: 508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
D I+RD E E S T E G+D S ++ + K + ++ G W+Q L +
Sbjct: 122 DSIERDAAQEAESS----TGLEPGSD---SSQCSVPLNKGKDAPTKKESLGHWSQGL-KI 173
Query: 568 AMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
+M +D +++ D VVV+ D YPKA+ H LVL + + L V EHL++L+ M
Sbjct: 174 SM-----QDPKMQVYKDEQVVVIKDKYPKARYHWLVLP-WASVSSLKAVTGEHLELLKHM 227
Query: 626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
H VG K F + L FRLGYH+ PSM +HLHVISQDF+S LKNKKHWNSFNT +
Sbjct: 228 HTVGEKMIADFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 286
Query: 686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
F +S V+E + + G+ +++D LL + LRCH C+ PSIP+LK H+
Sbjct: 287 FLESQAVIEMVQHAGRVSVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 336
>sp|Q8K4H4|APTX_RAT Aprataxin OS=Rattus norvegicus GN=Aptx PE=2 SV=1
Length = 329
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 11/197 (5%)
Query: 541 NLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI--SDDVVVLNDLYPKAQKH 598
++S K G + ++ G W+Q L + +M KD +++ D VVV+ D YPKA+ H
Sbjct: 135 SVSPKTGKHGAAKEESLGHWSQGL-KISM-----KDPKMQVYKDDQVVVIKDKYPKARHH 188
Query: 599 ILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQL 658
LVL + + L V +EHL++L+ MHAVG K F + L FRLGYH+ PSM +
Sbjct: 189 WLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFT-GSSKLRFRLGYHAIPSMSHV 246
Query: 659 HLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYD-SLLSMELRC 717
HLHVISQDF+S LKNKKHWNSFNT +F +S V++ + G+ T+KD LL + LRC
Sbjct: 247 HLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAGRVTVKDGTCELLKLPLRC 306
Query: 718 HRCRSAHPSIPRLKSHI 734
H C+ PSIP+LK H+
Sbjct: 307 HECQQLLPSIPQLKEHL 323
>sp|Q9BGQ0|APTX_MACFA Aprataxin OS=Macaca fascicularis GN=APTX PE=2 SV=1
Length = 356
Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 18/230 (7%)
Query: 508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
D I+RD HE E T E G++ N + I ++ G W+Q L +
Sbjct: 136 DSIERDAAHEAEPG----TGLEPGSNHNQCSVPPKKGKDAPI---KKESLGHWSQGL-KI 187
Query: 568 AMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
+M +D +++ D VVV+ D YPKA+ H LVL + + L V EHL++L+ M
Sbjct: 188 SM-----QDPKMQVYKDEQVVVIKDKYPKARYHWLVLP-WTAISSLKAVTREHLELLKHM 241
Query: 626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
H VG K F + L FRLGYH+ PSM +HLHVISQDF+S LKNKKHWNSFNT +
Sbjct: 242 HTVGEKVIVDFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 300
Query: 686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
F +S V+E + G+ T++D LL + LRCH C+ PSIP+LK H+
Sbjct: 301 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350
>sp|Q7YRZ1|APTX_PIG Aprataxin OS=Sus scrofa GN=APTX PE=2 SV=1
Length = 356
Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 131/231 (56%), Gaps = 18/231 (7%)
Query: 507 GDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYR 566
D ++RD E + S T E G++ + ++ EK + ++ W+Q L
Sbjct: 135 SDSVERDASQEAKPS----TGAEPGSNPS---QCSVPPKKEKDAATKKESLSHWSQGLKI 187
Query: 567 TAMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQT 624
+ P+ +KDD VVV+ D YPKA+ H LVL + + L V EHL++L+
Sbjct: 188 SMEDPKMQVYKDD------QVVVIKDKYPKARYHWLVLP-WASISSLKAVTREHLELLRH 240
Query: 625 MHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTA 684
MH VG K F + L FRLGYH+ PSM +HLHVISQDF+S LKNKKHWNSFNT
Sbjct: 241 MHTVGEKVIADFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTE 299
Query: 685 FFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
+F +S V+E + G+ T++D LL + LRCH C+ PSIP+LK H+
Sbjct: 300 YFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350
>sp|P61798|APTX_CHICK Aprataxin (Fragment) OS=Gallus gallus GN=APTX PE=2 SV=1
Length = 316
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Query: 558 GSWAQALYRTAMYP--ERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVR 615
G W+Q L + P + +KD+ VV+ D YPKA+ H LVL +D + L V
Sbjct: 139 GHWSQGLKSSMQDPKVQVYKDE------KTVVIKDKYPKARYHWLVLP-WDSISSLKSVT 191
Query: 616 NEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
EHL +L+ MHAVG K ++ ++ SL FRLGYH+ PSM QLHLHVISQDF+S LK K
Sbjct: 192 REHLGLLEHMHAVGQKMIQQCPAKE-SLEFRLGYHAIPSMSQLHLHVISQDFDSPALKTK 250
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDS-LLSMELRCHRCRSAHPSIPRLKSHI 734
KHWNSF T +F +S +V+E + + GK T+ D S LL + LRCH C+ +IP+LK H+
Sbjct: 251 KHWNSFTTEYFLNSEEVIEMVRSKGKVTVNDQASELLKLPLRCHLCKQQLSTIPQLKEHL 310
>sp|Q7Z2E3|APTX_HUMAN Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2
Length = 356
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 129/231 (55%), Gaps = 20/231 (8%)
Query: 508 DKIKRDGGHEYEQSKKCKTQNEVGT-DINLSRAANLSADNEKIGVSTSKAWGSWAQALYR 566
D I+RD E E + + G + L + + E +G W+Q L +
Sbjct: 136 DSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLG--------HWSQGL-K 186
Query: 567 TAMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQT 624
+M +D +++ D VVV+ D YPKA+ H LVL + + L V EHL++L+
Sbjct: 187 ISM-----QDPKMQVYKDEQVVVIKDKYPKARYHWLVLP-WTSISSLKAVAREHLELLKH 240
Query: 625 MHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTA 684
MH VG K F + L FRLGYH+ PSM +HLHVISQDF+S LKNKKHWNSFNT
Sbjct: 241 MHTVGEKVIVDFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTE 299
Query: 685 FFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
+F +S V+E + G+ T++D LL + LRCH C+ PSIP+LK H+
Sbjct: 300 YFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350
>sp|P61801|APTX_XENTR Aprataxin OS=Xenopus tropicalis GN=aptx PE=2 SV=1
Length = 347
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 119/192 (61%), Gaps = 13/192 (6%)
Query: 547 EKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI--SDDVVVLNDLYPKAQKHILVLSR 604
EK K+ G W+Q L + +M +D +++ D VVV+ D YPKA+ H LVL
Sbjct: 159 EKYNAQEVKSQGHWSQGL-KASM-----QDPTMQVFKDDKVVVIKDKYPKARYHWLVLP- 211
Query: 605 FDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLA-FRLGYHSAPSMRQLHLHVI 663
+ + L +R EHL+++Q MHAVG K A++ H D+ A F+LGYH+ PSM +HLHVI
Sbjct: 212 WQSIANLKVLRAEHLELVQHMHAVGQKIAKE--HSDSKCAPFQLGYHAIPSMSHVHLHVI 269
Query: 664 SQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRS 722
SQDF+S LKNKKHWNSF T +F +S ++E I HGK +KD LL L CH CR
Sbjct: 270 SQDFDSPCLKNKKHWNSFTTDYFLESQAMIEMIKTHGKVNVKDGVSELLKTPLMCHICRK 329
Query: 723 AHPSIPRLKSHI 734
++P+LK H+
Sbjct: 330 EQANMPQLKEHL 341
>sp|Q7YRZ2|APTX_BOVIN Aprataxin OS=Bos taurus GN=APTX PE=2 SV=1
Length = 356
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 11/180 (6%)
Query: 558 GSWAQALYRTAMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVR 615
G W+Q L + +M +D +++ D VVV+ D YPKA+ H LVL + + L V
Sbjct: 179 GHWSQGL-KISM-----EDPKMQVYKDEQVVVIKDKYPKARFHWLVLP-WASISSLKAVT 231
Query: 616 NEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
EHL++L+ MHAVG K F + FRLGYH+ PSM +HLHVISQDF+S LKNK
Sbjct: 232 REHLELLRHMHAVGEKVIADFA-GSSKFRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNK 290
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
KHWNSFNT +F +S V+E + G+ T++D LL + LRCH C+ PSIP+LK H+
Sbjct: 291 KHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350
>sp|P61799|APTX_DANRE Aprataxin OS=Danio rerio GN=aptx PE=2 SV=1
Length = 324
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 13/187 (6%)
Query: 554 SKAWGSWAQALYRTAMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL 611
S++ G W+Q L + P+ +KDD VVV+ D YPKA+ H LVL + + L
Sbjct: 143 SESAGHWSQGLKASMQDPKMQVYKDD------SVVVIKDKYPKARYHWLVLP-WQSISSL 195
Query: 612 ADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAPSMRQLHLHVISQDFNSK 670
+R+EH+++L+ M V + E+ DA L+FRLGYH+ PSM +HLHVISQDF+S
Sbjct: 196 KALRSEHVELLKHMQRVADQMVEQC--PDAHKLSFRLGYHAIPSMSHVHLHVISQDFDSP 253
Query: 671 HLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPR 729
LKNKKHWNSF T +F +S DV+ + + GK +K+ LL + LRCH C +IP+
Sbjct: 254 CLKNKKHWNSFTTDYFVESQDVISMLEHDGKVQVKEGAGELLKLPLRCHVCGKEQTTIPK 313
Query: 730 LKSHISS 736
LK H+ +
Sbjct: 314 LKDHLKT 320
>sp|Q7T287|APTX_XENLA Aprataxin OS=Xenopus laevis GN=aptx PE=2 SV=1
Length = 347
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 116/191 (60%), Gaps = 13/191 (6%)
Query: 548 KIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI--SDDVVVLNDLYPKAQKHILVLSRF 605
K V K+ G W+Q L + +M +D +++ D +VV+ D YPKA+ H LVL +
Sbjct: 160 KSNVQEVKSQGHWSQDL-KVSM-----QDPTMQVFKDDKIVVIKDKYPKARYHWLVLP-W 212
Query: 606 DGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLA-FRLGYHSAPSMRQLHLHVIS 664
+ L +R EHL+++Q M AVG A + H ++ A FR GYH+ PSM +HLHVIS
Sbjct: 213 QSIASLKVLRAEHLELVQHMDAVGHNIARE--HTNSKCAPFRFGYHAIPSMSHVHLHVIS 270
Query: 665 QDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDS-LLSMELRCHRCRSA 723
QDF+S LKNKKHWNSF T +F +S V+E + HGK +K+ S +L L CH C+
Sbjct: 271 QDFDSPCLKNKKHWNSFTTDYFLESQAVIEMLKTHGKVNVKERISDVLKTPLLCHMCKKE 330
Query: 724 HPSIPRLKSHI 734
++P+LK H+
Sbjct: 331 QATMPQLKEHL 341
>sp|P61802|APTX_CIOIN Aprataxin OS=Ciona intestinalis GN=APTX PE=2 SV=1
Length = 380
Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 560 WAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHL 619
W+Q L + PE +++ + +VV+ D YPKA+ H L+L + D + ++ +++
Sbjct: 205 WSQGLKASMEDPEL----VVKEDEQIVVIKDKYPKAKYHWLILPK-DSISSTKNLSTDNI 259
Query: 620 QILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWN 679
++L+ + VG + A + + + FR GYH+ SM Q+H+HVISQDF S K KKHWN
Sbjct: 260 ELLKHILKVGQELAAEVKDKQPDVEFRFGYHAVASMSQMHMHVISQDFQSSSFKTKKHWN 319
Query: 680 SFNTAFFCDSVDVLEEISNHGKAT-LKDYDSLLSMELRCHRCRSAHPSIPRLKSHISSCR 738
SF T +F D+ D++ E+ GK + SLL+ L+CHRC+ +IP LK HI SC+
Sbjct: 320 SFTTDYFVDATDIINELETGGKVKDRRTMTSLLNEPLKCHRCKKPQKNIPTLKKHIDSCQ 379
>sp|P61800|APTX_TAKRU Aprataxin OS=Takifugu rubripes GN=aptx PE=2 SV=1
Length = 356
Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 126/247 (51%), Gaps = 36/247 (14%)
Query: 519 EQSKKCKTQNEVGTDINLSRAANLSADN----------------EKIGVSTSKAWGSWAQ 562
E +K Q EV ++ A +S + E +G + G W
Sbjct: 124 EPCRKSSKQGEVSVSVSQKEAPKMSVRSNVHFSLLSILLSGLLSEGVGKMLQGSVGHWNL 183
Query: 563 ALYRTAMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQ 620
L + PE +KDD VVV+ D YPKA+ H LVL + + L +R EH
Sbjct: 184 GLKASMQDPEMQVYKDD------KVVVIKDKYPKARYHWLVLP-WQSISSLKALRKEHCD 236
Query: 621 ILQTMHAVGMKWAEKFLHE--DASLA-FRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKH 677
+++ M V AE+ + + DAS FR GYH+ PSM +HLHVISQDF+S LKNKKH
Sbjct: 237 LVKHMQQV----AEQMIRQCPDASTPRFRSGYHAIPSMSHVHLHVISQDFDSPCLKNKKH 292
Query: 678 WNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHISS 736
WNSF T +F +S V++ + G ++K+ LL + LRCH CR +IP LK H++S
Sbjct: 293 WNSFTTDYFIESQAVIQMLETDGSISIKEGATELLKLPLRCHVCRKEFSNIPALKQHLNS 352
Query: 737 CRAPFPS 743
FPS
Sbjct: 353 ---HFPS 356
>sp|Q558W0|Y2839_DICDI HIT domain-containing protein DDB_G0272839 OS=Dictyostelium
discoideum GN=DDB_G0272839 PE=2 SV=1
Length = 390
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGM 630
PE D +L D V + D YPKA+ H LV+ R + ++ L ++ + +L+ M+ V
Sbjct: 237 PESFLDVVLYYDDKTVAVLDKYPKAKHHYLVIPRVE-INTLDELTPSFIPMLEHMYNVAD 295
Query: 631 KWAEKFL---HEDASLA---FRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTA 684
+ + ++D +L F+LG+H+ PSM++LHLH+IS D+N+K+LKN KHWNSF T
Sbjct: 296 AIINEIISKDNDDDNLKKSDFKLGFHAIPSMKRLHLHIISNDYNTKYLKNNKHWNSFTTE 355
Query: 685 FFCDSVDVLEEISNHG 700
F+ +L E+ ++G
Sbjct: 356 FYIPFDKILNELKSNG 371
>sp|Q8MSG8|APTX_DROME Aprataxin-like protein OS=Drosophila melanogaster GN=CG5316 PE=2
SV=2
Length = 662
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 28/188 (14%)
Query: 559 SWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFD-----GLDRLAD 613
SW+ AL + PE +L+ S+ VV+ D +PKAQ H LVL D L+R
Sbjct: 2 SWSSALIKDISKPE----NLIISSEIAVVIADKFPKAQHHYLVLPLADIPSIFHLNRSHL 57
Query: 614 VRNEHLQIL--QTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKH 671
E L +L + G++W + F +G+H+ PSM++LHLHVIS+DF S
Sbjct: 58 SLLEELHLLARNVVEVKGVRWQD----------FNVGFHAEPSMQRLHLHVISKDFVSTS 107
Query: 672 LKNKKHWNSFNTAFFCDSVDVLEEISNHGK-----ATLKDYDSLLSMELRCHRCRSAHPS 726
LK KKHWNSFNT F + ++ +LK D LL+ L C++C +
Sbjct: 108 LKTKKHWNSFNTELFVPYTKLYAQLEKENSISRLPKSLK--DELLAKPLICNQCEFVARN 165
Query: 727 IPRLKSHI 734
+P LK H+
Sbjct: 166 LPSLKGHL 173
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 575 KDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAE 634
K + L SD VV+ YPK+Q H V+++ + D + + L +L M + + E
Sbjct: 239 KRNFLIESDRAVVMKADYPKSQYHFRVVAKEEFRD-ITQLTEAQLPLLDHMMDLANQIIE 297
Query: 635 KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLE 694
K H + S F +G+ +L+LHVIS DF S +K HWNSFNT F
Sbjct: 298 KQKHLE-SRNFLIGFKVNTFWNRLNLHVISNDFYSMAMKRISHWNSFNTELFMPFQIAYM 356
Query: 695 EISNHG---KATLKDYDSLLS-MELRCHRCRSAHPSIPRLKSHI 734
+S G + + Y++L LRC++C + LK+H+
Sbjct: 357 MLSVQGSIESISEETYNNLQEKTPLRCNQCEFVTNMLLDLKAHL 400
>sp|Q08702|APTX_YEAST Aprataxin-like protein OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HNT3 PE=1 SV=1
Length = 217
Score = 83.6 bits (205), Expect = 5e-15, Method: Composition-based stats.
Identities = 67/205 (32%), Positives = 94/205 (45%), Gaps = 29/205 (14%)
Query: 559 SWAQALYRTAMYPERHKDDLLEISDD-VVVLNDLYPKAQKHILVLSRFDGLDRL------ 611
SW AL PE DD + DD V ++ D +PK++ H+L+L R L R
Sbjct: 2 SWRYALKNYVTSPETVNDDTVTYFDDKVSIIRDSFPKSECHLLILPRTMQLSRSHPTKVI 61
Query: 612 -ADVRNEHLQILQT-MHAVGMKWAEKF---------------LHEDASLAFR----LGYH 650
A +NE + + + + + EKF + +D + R +G H
Sbjct: 62 DAKFKNEFESYVNSAIDHIFRHFQEKFRIKKSDDDKDPCWDDILKDKNKFVRNFVQVGIH 121
Query: 651 SAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSL 710
S PSM LH+HVIS+DF+S LKNKKH+NSFNT FF D+ N G + L
Sbjct: 122 SVPSMANLHIHVISKDFHSVRLKNKKHYNSFNTGFFISWDDLPLNGKNLGTDKEIETTYL 181
Query: 711 LSMELRCHRC-RSAHPSIPRLKSHI 734
+L C C R+ LK H+
Sbjct: 182 KEHDLLCCYCQRNFSNKFSLLKKHL 206
>sp|O74859|APTX_SCHPO Aprataxin-like protein OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hnt3 PE=1 SV=1
Length = 232
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
PE +K+ ++ DDVV++ D++PK++ H+L+++R L + ++ +H +++ + +
Sbjct: 45 PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 103
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
G+ + E + +E ++G+H+ PSM LHLH+++ D S LKN
Sbjct: 104 VQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 163
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
H+ SF + FF + G T SL +L+C RC + +LK+H+
Sbjct: 164 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 218
>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pnk1 PE=1 SV=2
Length = 408
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK 79
Q +V++VG P SGKST E + + + R+ QD + TK +C+ +A ALKK K
Sbjct: 256 QEIVVLVGFPSSGKSTLAESQIVTQG--YERVNQDILK-----TKSKCIKAAIEALKKEK 308
Query: 80 SVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAA 138
SV +D N E R ++ + E+ + + L +L +V R H Q + A
Sbjct: 309 SVVIDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEELARHNNVFRYIHHNQKQLPEIA 368
Query: 139 AVVNRMLQKKELPKLSEGFSRI 160
N + ++P + EGF+ +
Sbjct: 369 --FNSFKSRFQMPTVEEGFTNV 388
>sp|Q5UQD2|PNKP_MIMIV Putative bifunctional polynucleotide phosphatase/kinase
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L469 PE=3
SV=1
Length = 421
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78
K+ +++M+G PGSGKS F ++ + + + I QD K TK +CL+ +AL KG
Sbjct: 257 KKEMIVMIGQPGSGKSFFVKNYILPNG--YVHINQD-----KCKTKAKCLSETENALSKG 309
Query: 79 KSVFLDRCNLEREQRTDFVKLGGPEV--DVHAVVLDLPAKLCIS-RSVKRIEHEGNLQGG 135
KSV +D N + R + L V A++++ P +L +V+ I G +
Sbjct: 310 KSVVIDNTNPDVISRMTYTNLAKENNYDHVRAIIMETPDELAKHLNNVRHIYSSGTVP-- 367
Query: 136 KAAAVVNRMLQKK-ELPKLSEGFSRI 160
K + + +K LP+ E F +I
Sbjct: 368 KVTDIAYNIYRKNFVLPQYEENFDKI 393
>sp|Q19683|YZR5_CAEEL Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans
GN=F21D5.5 PE=2 SV=2
Length = 407
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+++MVG PGSGKSTF + M + + +DTI GT +C+ + S L GKSV
Sbjct: 252 IILMVGFPGSGKSTFAK--MLGHQHDYKIVNRDTI-----GTWQKCVAATRSYLADGKSV 304
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D + + E R ++ + E+ V ++ + ++ R + + +++V
Sbjct: 305 VIDNTSPDLESRKRYIDV-AKELGVPIRCFEMNCSMEHAQHNIRFRVLTDDNAAEISSMV 363
Query: 142 NRMLQKKEL-PKLSEGFSRIT 161
R+ + K + P LSEGFS+I
Sbjct: 364 LRIHKGKYVEPTLSEGFSQIV 384
>sp|Q9JLV6|PNKP_MOUSE Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus
GN=Pnkp PE=1 SV=2
Length = 522
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C++S +AL++GK V
Sbjct: 366 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 418
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +++ + V + A + +R R + + +V
Sbjct: 419 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 477
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGF I
Sbjct: 478 MFSYRKQFEPPTLAEGFLEI 497
>sp|Q96T60|PNKP_HUMAN Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens
GN=PNKP PE=1 SV=1
Length = 521
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
+V+ VG PG+GKSTF + + S+ + + +DT+ G+ +C+T+ +ALK+GK V
Sbjct: 367 VVVAVGFPGAGKSTFLKKHLVSAG--YVHVNRDTL-----GSWQRCVTTCETALKQGKRV 419
Query: 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
+D N + R +V+ V A L +R R + + +V
Sbjct: 420 AIDNTNPDAASRARYVQCAR-AAGVPCRCFLFTATLEQARHNNRFREMTDSSHIPVSDMV 478
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
+K+ E P L+EGFS I
Sbjct: 479 MYGYRKQFEAPTLAEGFSAI 498
>sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain
DSM 18703 / LMG 23827 / z3032) GN=ymdB PE=3 SV=1
Length = 176
Score = 47.4 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYP 406
GDITR+ T +VI NAAN L GGGGV+ AI AAGP+L A ++ P
Sbjct: 10 GDITRIDT------DVIVNAANPSLM-GGGGVDGAIHRAAGPSLLAACKVVRQQQGECQP 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI G VIH +GP
Sbjct: 63 GHAVITE-------AGDLAAKAVIHTVGP 84
>sp|Q9CPS6|HINT3_MOUSE Histidine triad nucleotide-binding protein 3 OS=Mus musculus
GN=Hint3 PE=2 SV=1
Length = 165
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 545 DNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI-SDDVVVLNDLYPKAQKHILVLS 603
D E TS++W + ++ + K +L ++D+V D+ P A H LV+
Sbjct: 13 DPEGSSPGTSESWNYDSNCVFCRVAAGQEPKTELFHCENEDLVCFKDIKPAALYHYLVVP 72
Query: 604 RFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP--SMRQLHLH 661
+ + D+ +H++++++M A G E+ D + R+G+H P S+ LHLH
Sbjct: 73 K-KHIGSCKDLNKDHIEMVESMVAAGKTMLERNNFTDFT-DVRMGFHVPPFCSISHLHLH 130
Query: 662 VIS 664
VI+
Sbjct: 131 VIA 133
>sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain
At-22) GN=ymdB PE=3 SV=1
Length = 175
Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 349 VGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLY 405
+GDIT L +VI NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 9 LGDITTLEV------DVIVNAANPSLL-GGGGVDGAIHRAAGPALLAACKQVLQQQGECP 61
Query: 406 PGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
PG++VI + G + VIH +GP
Sbjct: 62 PGHAVIT-------IAGDLPASAVIHTVGP 84
>sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain
342) GN=ymdB PE=3 SV=1
Length = 175
Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 349 VGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLY 405
+GDIT L +VI NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 9 LGDITTLEV------DVIVNAANPSLL-GGGGVDGAIHRAAGPALLAACKQVLQQQGECP 61
Query: 406 PGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
PG++VI + G + VIH +GP
Sbjct: 62 PGHAVIT-------IAGDLPASAVIHTVGP 84
>sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483)
GN=ymdB PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATA---ERAKSLYP 406
GDIT+L + I NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 10 GDITQL------SVDAIVNAANASLM-GGGGVDGAIHRAAGPALLDACKLIRQQQGECQT 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI P G+ VIH +GP
Sbjct: 63 GHAVITP-------AGKLSAKAVIHTVGP 84
>sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=ymdB PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 25/116 (21%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATA---ERAKSLYP 406
GDIT+L + I NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 10 GDITQL------SVDAIVNAANASLM-GGGGVDGAIHRAAGPALLDACKLIRQQQGECQT 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
G++VI P G+ VIH +GP G + E+L +AY S
Sbjct: 63 GHAVITP-------AGKLSAKAVIHTVGP--------VWRGGEHQEAELLEEAYRS 103
>sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain
SL254) GN=ymdB PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATA---ERAKSLYP 406
GDIT+L + I NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 10 GDITQL------SVDAIVNAANASLM-GGGGVDGAIHRAAGPALLDACKLIRQQQGECQT 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI P G+ VIH +GP
Sbjct: 63 GHAVITP-------AGKLSAKAVIHTVGP 84
>sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=ymdB PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATA---ERAKSLYP 406
GDIT+L + I NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 10 GDITQL------SVDAIVNAANASLM-GGGGVDGAIHRAAGPALLDACKLIRQQQGECQT 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI P G+ VIH +GP
Sbjct: 63 GHAVITP-------AGKLSAKAVIHTVGP 84
>sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi GN=ymdB PE=3
SV=1
Length = 179
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATA---ERAKSLYP 406
GDIT+L + I NAAN L GGGGV+ AI AAGPAL A ++
Sbjct: 10 GDITQL------SVDAIVNAANASLM-GGGGVDGAIHRAAGPALLDACKLIRQQQGECQT 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI P G+ VIH +GP
Sbjct: 63 GHAVITP-------AGKLSAKAVIHTVGP 84
>sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1105 PE=4 SV=2
Length = 196
Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 349 VGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGN 408
VGDIT I NAAN L GGGGV+ AI SAAGP L + + YP
Sbjct: 15 VGDITESDA------EAIVNAANSSLM-GGGGVDGAIHSAAGPELNGELVKIRRERYPNG 67
Query: 409 SVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ P + R +H+IH +GP
Sbjct: 68 --LPPGEAVITRGYRLKASHIIHTVGP 92
>sp|Q8K3P7|HINT3_RAT Histidine triad nucleotide-binding protein 3 OS=Rattus norvegicus
GN=Hint3 PE=2 SV=2
Length = 175
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 550 GVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLD 609
G S S+ + S R A E + L + D+V D+ P A H LV+ + +
Sbjct: 30 GTSESRDYDSNC-VFCRVAAGQEPETELLYCENKDLVCFKDIKPAALHHYLVVPK-KHIG 87
Query: 610 RLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP--SMRQLHLHVIS 664
D+ +H++++++M VG E+ D + R+G+H P S+ LHLHVI+
Sbjct: 88 SCKDLNKDHIEMVESMVTVGKTILERNNFTDFT-DVRMGFHVPPFCSVSHLHLHVIA 143
>sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobacter cloacae subsp.
cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 /
NCDC 279-56) GN=ymdB PE=3 SV=1
Length = 180
Score = 43.9 bits (102), Expect = 0.005, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYP 406
GDIT ++ +VI NAAN L GGGGV+ AI AAGP L A ++ P
Sbjct: 10 GDITTMHV------DVIVNAANPSLM-GGGGVDGAIHRAAGPQLLEACKTVRQQQGECPP 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI L G VIH +GP
Sbjct: 63 GHAVIT-------LAGDLPAKAVIHAVGP 84
>sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobacter sp. (strain 638)
GN=ymdB PE=3 SV=1
Length = 180
Score = 43.1 bits (100), Expect = 0.008, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 349 VGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLY 405
VGDIT + +VI NAAN L GGGGV+ AI AAGP L A ++
Sbjct: 9 VGDITTMEV------DVIVNAANPSLM-GGGGVDGAIHRAAGPQLLEACKTVRQQQGECA 61
Query: 406 PGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
PG++VI + G VIH +GP
Sbjct: 62 PGHAVIT-------IAGDLPAKAVIHAVGP 84
Score = 35.0 bits (79), Expect = 2.0, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 231 ITEEKNSCLEGQEITSLLSD--------AAGEEVKGTENPEVASVNQN-------GSSSD 275
+ +++ C G + ++ D A G +G EN E ++ +++
Sbjct: 53 VRQQQGECAPGHAVITIAGDLPAKAVIHAVGPVWQGGENHEARTLQDAYLNCLRLAAANG 112
Query: 276 VPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
TLAFP++ST + + A+++ ++ V EF+ +
Sbjct: 113 YKTLAFPAISTGVYGYPKAAAAEIAVDTVSEFLTR 147
>sp|Q28BZ2|HINT3_XENTR Histidine triad nucleotide-binding protein 3 OS=Xenopus tropicalis
GN=hint3 PE=2 SV=1
Length = 153
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 577 DLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF 636
+LL DD+V D+ P H LV+ + + + +H+Q+++TM VG +K
Sbjct: 33 ELLHSDDDLVCFKDIRPAVTHHYLVVPK-KHVGTCKTLTKDHVQLIKTMMEVGKSTLQKN 91
Query: 637 LHEDASLAFRLGYHSAP--SMRQLHLHVIS 664
D RLG+H P S+ LHLHV++
Sbjct: 92 NVTDLE-DIRLGFHYPPFCSISHLHLHVLA 120
>sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=ymdB PE=3 SV=1
Length = 180
Score = 43.1 bits (100), Expect = 0.009, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYP 406
GDIT + +VI NAAN L GGGGV+ AI AAGPAL A ++ P
Sbjct: 10 GDITLIDV------DVIVNAANPSLM-GGGGVDGAIHRAAGPALLAACRQVRQQQGECQP 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI G V+H +GP
Sbjct: 63 GHAVITE-------AGDLAAKAVVHTVGP 84
>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=3
Length = 1801
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEV---ATAERAKSLYP 406
GD+ RL +V+ NA+N LK GG+ AA+ AAGP L+ +R L P
Sbjct: 809 GDLARL------PVDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLP 861
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRR-PNCL 445
GN+ I G+ HVIH +GP + P C+
Sbjct: 862 GNATISK-------AGKLPYHHVIHAVGPRWSGYEAPRCV 894
>sp|Q6PAV8|MACD2_XENLA O-acetyl-ADP-ribose deacetylase MACROD2 OS=Xenopus laevis
GN=macrod2 PE=2 SV=1
Length = 418
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 319 VDLTQGSKILSLVRAKAAQKHINPK----------KFFTFVGDITRLYTGGGLCCNVIAN 368
V L + ++ +++KA+ +P+ K + GDIT+L + I N
Sbjct: 34 VSLDKIPSLMEELKSKASSDDESPEEIQVKNSLCEKVSFYKGDITQLEV------DAIVN 87
Query: 369 AANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE-GVT 427
AAN L GGGGV+ I A+GP+L +A G + I CG E
Sbjct: 88 AANTSLL-GGGGVDGCIHRASGPSL-LAECRELGGCETGQAKIT--------CGYELPAK 137
Query: 428 HVIHVLGP 435
+VIH +GP
Sbjct: 138 YVIHTVGP 145
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
+ +D+ T+AFP +ST + + NE A++V + V+EF+ K
Sbjct: 170 ATENDIRTIAFPCISTGIYGYPNEPAANVALTTVKEFLKK 209
>sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=ymdB PE=3 SV=1
Length = 177
Score = 42.4 bits (98), Expect = 0.016, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE--RAKSLYPG 407
GDIT+L +VI NAAN L GGGGV+ AI AAGP L A + + + P
Sbjct: 10 GDITQLTV------DVIVNAANASLL-GGGGVDGAIHRAAGPTLLEACKKVRQQQGECPA 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
++ L P VIH +GP
Sbjct: 63 GHAVITLAGNLP------AKAVIHTVGP 84
>sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherichia coli (strain K12)
GN=ymdB PE=1 SV=1
Length = 177
Score = 42.0 bits (97), Expect = 0.017, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAKSLYPG 407
GDIT+L +VI NAAN L GGGGV+ AI AAGPAL A + + P
Sbjct: 10 GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
++ L P V+H +GP
Sbjct: 63 GHAVITLAGDLP------AKAVVHTVGP 84
>sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ymdB PE=3 SV=1
Length = 177
Score = 42.0 bits (97), Expect = 0.017, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAKSLYPG 407
GDIT+L +VI NAAN L GGGGV+ AI AAGPAL A + + P
Sbjct: 10 GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
++ L P V+H +GP
Sbjct: 63 GHAVITLAGDLP------AKAVVHTVGP 84
>sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O157:H7 GN=ymdB
PE=3 SV=1
Length = 177
Score = 42.0 bits (97), Expect = 0.017, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAKSLYPG 407
GDIT+L +VI NAAN L GGGGV+ AI AAGPAL A + + P
Sbjct: 10 GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
++ L P V+H +GP
Sbjct: 63 GHAVITLAGDLP------AKAVVHTVGP 84
>sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b
(strain 8401) GN=ymdB PE=3 SV=1
Length = 177
Score = 42.0 bits (97), Expect = 0.017, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAKSLYPG 407
GDIT+L +VI NAAN L GGGGV+ AI AAGPAL A + + P
Sbjct: 10 GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
++ L P V+H +GP
Sbjct: 63 GHAVITLAGDLP------AKAVVHTVGP 84
>sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0719 PE=4 SV=1
Length = 186
Score = 42.0 bits (97), Expect = 0.020, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 346 FTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKS 403
F++ G++ + G + C I NAAN L GGGGV+ AI G +++ AE ++
Sbjct: 4 FSYKGNLIEIIEGDITDVNCEAIVNAANPSLM-GGGGVDGAIHLKGGKTIDLECAELRRT 62
Query: 404 LYPGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
+P + P + G+ +VIH +GP
Sbjct: 63 KWPKG--LPPGEADITSGGKLKAKYVIHTVGP 92
>sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain
ICC168) GN=ymdB PE=3 SV=2
Length = 177
Score = 41.6 bits (96), Expect = 0.022, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAK-SLYP 406
GDIT + + I NAAN L GGGGV+ AI AAGP L A T R + P
Sbjct: 10 GDITTV------AVDAIVNAANPSLM-GGGGVDGAIHRAAGPELLEACMTVRRQQGECPP 62
Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
G++VI GR VIH +GP
Sbjct: 63 GHAVITA-------AGRLPAKAVIHTVGP 84
>sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ymdB PE=3 SV=2
Length = 177
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERA 401
+ GDIT+L +VI NAAN L GGGGV+ AI AAGP L A R
Sbjct: 4 RIHVLQGDITQL------AVDVIVNAANSSLM-GGGGVDGAIHRAAGPELLEACQKVRRQ 56
Query: 402 KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
+ P ++ + P VIH +GP
Sbjct: 57 QGECPTGHAVITIAGNLP------ARAVIHTVGP 84
>sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2288
PE=4 SV=1
Length = 170
Score = 40.8 bits (94), Expect = 0.041, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 364 NVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP-GNSVIVPLPSTSPLCG 422
+ + AAN +L GGGGV+ I AAGP L A R P G +VI P
Sbjct: 16 DAVVTAANKQLM-GGGGVDGVIHRAAGPRL--LQAIRPIGGTPTGTAVITPAFDLE---- 68
Query: 423 REGVTHVIHVLGP 435
R+GV +VIH +GP
Sbjct: 69 RQGVKYVIHAVGP 81
>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum
(strain GMI1000) GN=RSc0334 PE=4 SV=1
Length = 171
Score = 40.8 bits (94), Expect = 0.042, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 21/81 (25%)
Query: 361 LCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY---PGNSVIVP---L 414
L C+ I NAAN L GGGGV+ AI AAGP L E ++L+ G + I P L
Sbjct: 18 LACDAIVNAANSALL-GGGGVDGAIHRAAGPEL----LEACRALHGCRTGQAKITPGFLL 72
Query: 415 PSTSPLCGREGVTHVIHVLGP 435
P+ ++IH +GP
Sbjct: 73 PA----------RYIIHTVGP 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,606,640
Number of Sequences: 539616
Number of extensions: 12421167
Number of successful extensions: 40674
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 40437
Number of HSP's gapped (non-prelim): 247
length of query: 761
length of database: 191,569,459
effective HSP length: 125
effective length of query: 636
effective length of database: 124,117,459
effective search space: 78938703924
effective search space used: 78938703924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)