Query 004319
Match_columns 761
No_of_seqs 659 out of 4231
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 21:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0562 Predicted hydrolase (H 100.0 2.4E-47 5.2E-52 359.6 7.4 181 559-744 2-183 (184)
2 cd02905 Macro_GDAP2_like Macro 99.9 8.5E-28 1.8E-32 230.7 9.4 111 344-476 2-117 (140)
3 cd02904 Macro_H2A_like Macro d 99.9 2.7E-27 5.7E-32 236.3 12.4 113 340-476 15-137 (186)
4 PF11969 DcpS_C: Scavenger mRN 99.9 1.1E-26 2.4E-31 216.4 9.9 112 565-677 4-116 (116)
5 PRK04143 hypothetical protein; 99.9 1E-25 2.3E-30 236.1 9.1 136 341-498 81-235 (264)
6 cd02906 Macro_1 Macro domain, 99.9 1.1E-24 2.3E-29 211.2 11.9 114 344-476 1-127 (147)
7 cd02908 Macro_Appr_pase_like M 99.9 1.6E-23 3.5E-28 207.0 11.9 110 344-476 1-115 (165)
8 cd02907 Macro_Af1521_BAL_like 99.9 3.2E-23 6.9E-28 206.8 12.8 114 342-476 1-122 (175)
9 PRK00431 RNase III inhibitor; 99.9 1E-22 2.2E-27 203.5 12.5 114 341-476 1-122 (177)
10 cd02903 Macro_BAL_like Macro d 99.9 1.8E-22 3.8E-27 193.6 12.5 108 343-476 1-115 (137)
11 COG2110 Predicted phosphatase 99.9 3.3E-22 7.2E-27 197.9 11.3 113 342-476 2-124 (179)
12 KOG4359 Protein kinase C inhib 99.8 3.7E-21 8E-26 177.2 9.3 116 576-697 47-165 (166)
13 cd03330 Macro_2 Macro domain, 99.8 2.5E-20 5.5E-25 177.6 12.6 107 345-476 2-113 (133)
14 TIGR01663 PNK-3'Pase polynucle 99.8 1.3E-18 2.7E-23 199.1 16.5 141 17-165 366-507 (526)
15 COG4639 Predicted kinase [Gene 99.7 1.2E-17 2.6E-22 159.7 12.1 141 19-170 1-155 (168)
16 KOG3275 Zinc-binding protein o 99.7 5.3E-18 1.2E-22 152.5 8.7 92 573-665 27-119 (127)
17 PRK10687 purine nucleoside pho 99.7 1.6E-17 3.4E-22 155.5 10.8 101 573-674 14-116 (119)
18 cd01278 aprataxin_related apra 99.7 3E-17 6.4E-22 149.8 11.1 89 574-664 14-104 (104)
19 PF13671 AAA_33: AAA domain; P 99.7 4.6E-17 1E-21 155.4 11.2 127 22-151 1-143 (143)
20 smart00506 A1pp Appr-1"-p proc 99.7 7.6E-17 1.6E-21 152.8 12.4 110 345-476 2-118 (133)
21 cd02749 Macro Macro domain, a 99.7 1.5E-16 3.3E-21 153.5 13.3 112 344-476 1-121 (147)
22 cd01276 PKCI_related Protein K 99.7 2.6E-16 5.7E-21 143.3 10.3 91 574-665 12-104 (104)
23 COG0537 Hit Diadenosine tetrap 99.7 5.3E-16 1.1E-20 148.9 12.5 92 573-665 12-104 (138)
24 cd02900 Macro_Appr_pase Macro 99.7 4.4E-16 9.5E-21 156.1 12.2 118 343-476 19-163 (186)
25 KOG2633 Hismacro and SEC14 dom 99.6 2.8E-16 6.1E-21 156.5 8.0 106 342-476 32-142 (200)
26 PF01230 HIT: HIT domain; Int 99.6 1.9E-15 4.1E-20 136.4 10.2 92 574-666 4-96 (98)
27 PRK13341 recombination factor 99.6 4.5E-17 9.8E-22 193.2 -1.4 137 339-498 471-678 (725)
28 PRK06762 hypothetical protein; 99.6 1.8E-14 4E-19 141.7 16.3 139 19-165 1-148 (166)
29 PF01661 Macro: Macro domain; 99.6 1.7E-15 3.7E-20 140.3 7.3 95 367-476 1-103 (118)
30 PHA02530 pseT polynucleotide k 99.6 9.4E-15 2E-19 157.3 14.0 177 19-213 1-202 (300)
31 COG4088 Predicted nucleotide k 99.6 1.1E-14 2.3E-19 145.1 11.8 134 22-163 3-153 (261)
32 PF08433 KTI12: Chromatin asso 99.6 1.1E-14 2.3E-19 154.8 11.5 133 22-159 3-148 (270)
33 TIGR03574 selen_PSTK L-seryl-t 99.6 4.6E-14 1E-18 148.4 14.9 138 22-166 1-151 (249)
34 cd02021 GntK Gluconate kinase 99.5 2.6E-13 5.7E-18 131.2 15.2 132 22-164 1-149 (150)
35 cd00468 HIT_like HIT family: H 99.5 1.1E-13 2.3E-18 121.3 9.3 85 579-664 1-86 (86)
36 TIGR01313 therm_gnt_kin carboh 99.5 7E-13 1.5E-17 130.1 14.6 139 23-174 1-155 (163)
37 KOG3354 Gluconate kinase [Carb 99.5 1.5E-12 3.2E-17 124.5 15.7 132 17-156 9-163 (191)
38 COG3265 GntK Gluconate kinase 99.5 6.3E-13 1.4E-17 126.5 13.2 134 26-173 1-150 (161)
39 cd02904 Macro_H2A_like Macro d 99.4 2.9E-14 6.2E-19 142.9 2.4 127 187-323 48-180 (186)
40 cd01277 HINT_subgroup HINT (hi 99.4 9.5E-13 2.1E-17 119.4 11.0 90 575-665 13-103 (103)
41 cd01275 FHIT FHIT (fragile his 99.4 1.2E-12 2.7E-17 123.6 10.9 89 576-665 14-103 (126)
42 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 7.5E-12 1.6E-16 124.9 14.9 149 22-174 1-176 (183)
43 PRK04143 hypothetical protein; 99.4 2.2E-13 4.7E-18 143.5 2.9 123 187-319 116-245 (264)
44 PRK14527 adenylate kinase; Pro 99.4 7.7E-12 1.7E-16 126.3 14.0 153 18-174 4-184 (191)
45 KOG3079 Uridylate kinase/adeny 99.3 1.7E-11 3.7E-16 120.8 15.1 152 17-174 5-185 (195)
46 PRK14531 adenylate kinase; Pro 99.3 1.1E-11 2.5E-16 124.4 13.7 147 21-175 3-177 (183)
47 cd00227 CPT Chloramphenicol (C 99.3 5.4E-11 1.2E-15 118.5 16.5 105 21-127 3-133 (175)
48 PRK14532 adenylate kinase; Pro 99.3 4.5E-11 9.7E-16 120.2 15.2 148 23-174 3-179 (188)
49 COG0645 Predicted kinase [Gene 99.3 4.3E-11 9.3E-16 117.0 13.8 126 21-152 2-147 (170)
50 cd02905 Macro_GDAP2_like Macro 99.3 8.4E-13 1.8E-17 127.1 1.8 104 194-308 35-140 (140)
51 cd02901 Macro_Poa1p_like Macro 99.3 2.3E-11 5.1E-16 116.9 11.2 108 345-476 2-118 (140)
52 TIGR03575 selen_PSTK_euk L-ser 99.3 4.3E-11 9.4E-16 130.8 13.9 132 22-160 1-204 (340)
53 cd01428 ADK Adenylate kinase ( 99.2 9.9E-11 2.2E-15 117.6 13.0 104 23-128 2-128 (194)
54 PLN02674 adenylate kinase 99.2 1.8E-10 3.8E-15 120.7 14.8 106 20-127 31-160 (244)
55 TIGR01351 adk adenylate kinase 99.2 2.1E-10 4.5E-15 117.7 15.0 101 23-127 2-126 (210)
56 PRK00279 adk adenylate kinase; 99.2 2.4E-10 5.1E-15 117.7 14.8 104 22-127 2-129 (215)
57 PLN02200 adenylate kinase fami 99.2 2.6E-10 5.5E-15 119.3 15.1 148 19-174 42-216 (234)
58 PRK09825 idnK D-gluconate kina 99.2 3.9E-10 8.4E-15 112.9 15.7 136 21-170 4-156 (176)
59 PF08303 tRNA_lig_kinase: tRNA 99.2 2.7E-10 5.8E-15 111.1 14.0 139 22-164 1-166 (168)
60 PF06414 Zeta_toxin: Zeta toxi 99.2 5.4E-11 1.2E-15 121.1 9.2 149 16-167 11-190 (199)
61 PRK11545 gntK gluconate kinase 99.2 3.5E-10 7.5E-15 111.8 14.1 131 26-170 1-148 (163)
62 PRK13808 adenylate kinase; Pro 99.2 4.9E-10 1.1E-14 122.0 15.3 149 23-174 3-185 (333)
63 PRK14529 adenylate kinase; Pro 99.1 3.8E-10 8.2E-15 116.8 13.5 104 23-128 3-129 (223)
64 PRK14530 adenylate kinase; Pro 99.1 7.7E-10 1.7E-14 113.9 15.5 102 22-128 5-129 (215)
65 KOG2134 Polynucleotide kinase 99.1 6.2E-14 1.3E-18 150.5 -15.5 390 84-538 3-405 (422)
66 PRK14528 adenylate kinase; Pro 99.1 6.9E-10 1.5E-14 112.0 14.4 150 22-174 3-180 (186)
67 TIGR00209 galT_1 galactose-1-p 99.1 2.8E-10 6.1E-15 125.1 12.3 130 564-698 198-337 (347)
68 KOG3379 Diadenosine polyphosph 99.1 4E-10 8.6E-15 104.8 11.2 109 576-701 17-126 (150)
69 cd02027 APSK Adenosine 5'-phos 99.1 4.2E-10 9.1E-15 109.5 11.4 101 22-124 1-116 (149)
70 PRK02496 adk adenylate kinase; 99.1 1E-09 2.2E-14 110.0 14.1 146 22-175 3-177 (184)
71 PRK11720 galactose-1-phosphate 99.1 5.5E-10 1.2E-14 122.8 12.6 130 564-698 198-337 (346)
72 cd02906 Macro_1 Macro domain, 99.1 1.4E-11 3E-16 119.8 -0.1 109 188-305 34-147 (147)
73 TIGR01360 aden_kin_iso1 adenyl 99.1 2.3E-09 5E-14 107.0 15.9 149 20-173 3-178 (188)
74 cd02908 Macro_Appr_pase_like M 99.1 5.8E-11 1.3E-15 117.6 3.7 118 194-322 34-155 (165)
75 PRK06217 hypothetical protein; 99.1 2.5E-09 5.5E-14 107.3 15.5 97 22-127 3-106 (183)
76 PLN02459 probable adenylate ki 99.1 2.1E-09 4.5E-14 113.4 15.1 104 20-128 29-156 (261)
77 PF01583 APS_kinase: Adenylyls 99.1 1.5E-09 3.2E-14 106.2 12.4 102 19-122 1-117 (156)
78 PRK14526 adenylate kinase; Pro 99.0 3.5E-09 7.7E-14 109.0 15.0 100 23-128 3-125 (211)
79 cd02907 Macro_Af1521_BAL_like 99.0 8.7E-11 1.9E-15 117.4 2.6 127 188-323 31-164 (175)
80 PTZ00088 adenylate kinase 1; P 99.0 5E-09 1.1E-13 109.2 15.6 102 21-127 7-132 (229)
81 cd02903 Macro_BAL_like Macro d 99.0 8E-11 1.7E-15 113.1 1.9 102 194-307 36-137 (137)
82 COG0563 Adk Adenylate kinase a 99.0 6.2E-09 1.4E-13 104.4 15.1 145 22-176 2-173 (178)
83 PRK08118 topology modulation p 99.0 1.5E-09 3.2E-14 107.7 10.2 96 22-127 3-101 (167)
84 PRK07261 topology modulation p 99.0 1.7E-09 3.7E-14 107.7 10.3 98 22-128 2-102 (171)
85 KOG3062 RNA polymerase II elon 99.0 3.1E-09 6.8E-14 107.5 11.5 136 22-160 3-154 (281)
86 KOG2134 Polynucleotide kinase 99.0 7.9E-10 1.7E-14 119.3 7.0 142 17-166 266-408 (422)
87 COG0703 AroK Shikimate kinase 99.0 4.2E-09 9E-14 104.2 11.5 133 22-164 4-152 (172)
88 TIGR00455 apsK adenylylsulfate 99.0 7.1E-09 1.5E-13 104.0 13.2 105 16-122 14-133 (184)
89 cd00608 GalT Galactose-1-phosp 98.9 2.7E-09 5.9E-14 117.0 10.3 99 564-665 188-294 (329)
90 PF00406 ADK: Adenylate kinase 98.9 6.8E-09 1.5E-13 100.8 12.0 98 25-124 1-122 (151)
91 COG0194 Gmk Guanylate kinase [ 98.9 7.8E-09 1.7E-13 102.8 11.0 141 19-173 3-176 (191)
92 COG0529 CysC Adenylylsulfate k 98.9 1.2E-08 2.5E-13 100.4 11.7 106 15-122 18-138 (197)
93 PRK14737 gmk guanylate kinase; 98.9 9.8E-09 2.1E-13 103.7 11.7 138 18-168 2-173 (186)
94 PRK00431 RNase III inhibitor; 98.9 9.7E-10 2.1E-14 110.0 4.2 122 194-323 37-163 (177)
95 PRK10078 ribose 1,5-bisphospho 98.9 4.1E-08 9E-13 98.8 14.8 101 21-127 3-133 (186)
96 PRK06547 hypothetical protein; 98.8 1.7E-08 3.6E-13 100.8 11.1 106 17-128 12-141 (172)
97 PRK13946 shikimate kinase; Pro 98.8 2.5E-08 5.4E-13 100.3 12.4 122 19-149 9-146 (184)
98 PF01591 6PF2K: 6-phosphofruct 98.8 2.7E-08 5.8E-13 103.0 12.6 149 16-164 8-193 (222)
99 KOG3969 Uncharacterized conser 98.8 1.9E-08 4E-13 104.0 11.1 128 559-699 147-282 (310)
100 PLN02643 ADP-glucose phosphory 98.8 1.1E-08 2.4E-13 112.2 10.2 108 578-698 211-331 (336)
101 PRK13948 shikimate kinase; Pro 98.8 4.5E-08 9.8E-13 98.6 13.1 136 17-164 7-158 (182)
102 PRK03846 adenylylsulfate kinas 98.8 4E-08 8.7E-13 99.9 12.9 106 14-121 18-138 (198)
103 PRK01184 hypothetical protein; 98.8 4.2E-08 9.2E-13 98.2 12.5 101 21-127 2-126 (184)
104 PRK05541 adenylylsulfate kinas 98.8 2.5E-08 5.4E-13 99.2 10.7 104 18-124 5-121 (176)
105 PLN02842 nucleotide kinase 98.8 7.4E-08 1.6E-12 109.9 15.6 99 24-127 1-123 (505)
106 KOG4622 Predicted nucleotide k 98.8 5.4E-09 1.2E-13 103.4 5.5 132 21-157 2-169 (291)
107 PRK00131 aroK shikimate kinase 98.8 3.4E-08 7.4E-13 97.1 11.0 123 18-149 2-140 (175)
108 PRK00625 shikimate kinase; Pro 98.8 3.6E-08 7.8E-13 98.5 11.0 98 22-127 2-118 (173)
109 PRK13949 shikimate kinase; Pro 98.8 6.6E-08 1.4E-12 96.2 12.4 95 23-125 4-114 (169)
110 PRK13947 shikimate kinase; Pro 98.8 4.6E-08 1E-12 96.5 11.2 98 23-128 4-117 (171)
111 PRK00889 adenylylsulfate kinas 98.8 6.3E-08 1.4E-12 96.3 12.2 102 18-122 2-117 (175)
112 PF07931 CPT: Chloramphenicol 98.7 7.9E-08 1.7E-12 96.0 12.2 108 21-129 2-134 (174)
113 PRK05537 bifunctional sulfate 98.7 9.3E-08 2E-12 111.9 14.5 105 17-122 389-509 (568)
114 PRK05506 bifunctional sulfate 98.7 1.5E-07 3.2E-12 112.1 15.8 104 17-122 457-575 (632)
115 PRK03839 putative kinase; Prov 98.7 4.5E-08 9.7E-13 97.8 9.5 91 22-127 2-102 (180)
116 cd00464 SK Shikimate kinase (S 98.7 1.2E-07 2.5E-12 91.6 11.9 98 23-128 2-115 (154)
117 smart00072 GuKc Guanylate kina 98.7 6.7E-08 1.5E-12 97.2 10.5 137 20-169 2-172 (184)
118 PRK05480 uridine/cytidine kina 98.7 3.4E-07 7.4E-12 93.7 15.6 119 18-148 4-166 (209)
119 PRK05057 aroK shikimate kinase 98.7 2E-07 4.4E-12 92.9 13.5 131 20-160 4-150 (172)
120 TIGR02322 phosphon_PhnN phosph 98.7 4.7E-07 1E-11 90.2 15.9 101 21-127 2-133 (179)
121 PRK06696 uridine kinase; Valid 98.7 1.5E-07 3.2E-12 97.7 12.6 103 17-127 19-169 (223)
122 COG4185 Uncharacterized protei 98.7 3.6E-08 7.7E-13 95.4 7.3 146 19-167 1-158 (187)
123 PRK08356 hypothetical protein; 98.7 5.3E-07 1.2E-11 91.5 15.9 100 20-128 5-138 (195)
124 COG2110 Predicted phosphatase 98.7 6.6E-09 1.4E-13 103.6 1.3 128 187-323 31-164 (179)
125 PRK12339 2-phosphoglycerate ki 98.6 3.4E-07 7.3E-12 93.4 13.4 104 19-128 2-143 (197)
126 TIGR03263 guanyl_kin guanylate 98.6 7.4E-07 1.6E-11 88.7 15.3 133 21-166 2-167 (180)
127 PRK14738 gmk guanylate kinase; 98.6 2.2E-07 4.7E-12 95.3 11.3 143 16-172 9-184 (206)
128 cd02020 CMPK Cytidine monophos 98.6 9.9E-08 2.1E-12 91.2 8.1 95 22-127 1-105 (147)
129 PTZ00301 uridine kinase; Provi 98.6 8.7E-07 1.9E-11 91.3 15.3 124 19-153 2-179 (210)
130 PF13207 AAA_17: AAA domain; P 98.6 1.3E-07 2.9E-12 87.6 7.9 94 22-126 1-111 (121)
131 PRK03731 aroL shikimate kinase 98.6 5.4E-07 1.2E-11 89.1 12.0 97 22-127 4-116 (171)
132 PRK08233 hypothetical protein; 98.6 3.8E-07 8.3E-12 90.5 10.6 99 20-127 3-120 (182)
133 KOG3347 Predicted nucleotide k 98.6 2.4E-07 5.1E-12 88.8 8.5 94 22-129 9-117 (176)
134 PRK00300 gmk guanylate kinase; 98.5 6.1E-07 1.3E-11 91.2 11.9 104 19-127 4-139 (205)
135 COG1102 Cmk Cytidylate kinase 98.5 8.9E-07 1.9E-11 86.2 11.7 95 22-127 2-113 (179)
136 PRK00081 coaE dephospho-CoA ki 98.5 5.6E-07 1.2E-11 91.5 10.7 110 21-148 3-161 (194)
137 KOG2633 Hismacro and SEC14 dom 98.5 3.3E-08 7.1E-13 99.2 1.4 92 230-324 87-184 (200)
138 cd01672 TMPK Thymidine monopho 98.5 2.2E-06 4.7E-11 85.8 14.6 150 22-174 2-192 (200)
139 COG0572 Udk Uridine kinase [Nu 98.5 9.8E-07 2.1E-11 90.5 11.7 122 19-152 7-179 (218)
140 PRK04040 adenylate kinase; Pro 98.5 2.2E-06 4.9E-11 86.8 14.3 101 20-124 2-130 (188)
141 PRK14730 coaE dephospho-CoA ki 98.5 6.5E-07 1.4E-11 91.1 10.1 111 21-148 2-162 (195)
142 COG1936 Predicted nucleotide k 98.5 8.9E-07 1.9E-11 87.2 10.4 125 22-165 2-138 (180)
143 PRK04182 cytidylate kinase; Pr 98.5 2.8E-06 6.2E-11 84.0 14.2 94 22-127 2-114 (180)
144 PF00625 Guanylate_kin: Guanyl 98.4 3.6E-06 7.8E-11 84.5 14.3 134 20-169 2-172 (183)
145 TIGR00235 udk uridine kinase. 98.4 3E-06 6.5E-11 86.8 13.8 117 17-144 3-162 (207)
146 TIGR02173 cyt_kin_arch cytidyl 98.4 8.9E-07 1.9E-11 87.0 9.5 95 22-127 2-114 (171)
147 cd02024 NRK1 Nicotinamide ribo 98.4 9E-07 2E-11 89.5 9.7 35 22-57 1-35 (187)
148 PRK07667 uridine kinase; Provi 98.4 2E-06 4.4E-11 87.3 12.2 104 16-127 13-161 (193)
149 PRK13975 thymidylate kinase; P 98.4 3E-06 6.4E-11 85.5 13.4 106 20-126 2-135 (196)
150 cd02022 DPCK Dephospho-coenzym 98.4 7.2E-07 1.6E-11 89.4 8.6 110 22-149 1-159 (179)
151 PRK14021 bifunctional shikimat 98.4 1.9E-06 4.1E-11 100.8 12.8 121 20-148 6-144 (542)
152 TIGR00152 dephospho-CoA kinase 98.4 2.2E-06 4.8E-11 86.4 11.4 109 22-148 1-160 (188)
153 cd03330 Macro_2 Macro domain, 98.4 1.5E-07 3.3E-12 89.7 2.5 98 195-304 35-132 (133)
154 PRK13973 thymidylate kinase; P 98.4 8E-06 1.7E-10 84.2 15.2 108 20-127 3-151 (213)
155 PRK08154 anaerobic benzoate ca 98.4 2.3E-06 4.9E-11 93.3 11.7 127 18-149 131-271 (309)
156 PF00485 PRK: Phosphoribulokin 98.4 2.4E-06 5.2E-11 86.6 11.1 127 22-161 1-185 (194)
157 PRK00698 tmk thymidylate kinas 98.4 7.6E-06 1.6E-10 82.9 14.4 152 20-174 3-194 (205)
158 PLN02348 phosphoribulokinase 98.3 3.8E-06 8.2E-11 93.3 12.7 120 16-146 45-221 (395)
159 PHA02595 tk.4 hypothetical pro 98.3 2.7E-06 5.9E-11 83.5 10.0 113 344-476 2-122 (154)
160 PRK14732 coaE dephospho-CoA ki 98.3 1.3E-06 2.8E-11 89.1 7.9 109 22-148 1-158 (196)
161 cd02028 UMPK_like Uridine mono 98.3 3.4E-06 7.4E-11 84.7 10.6 110 22-143 1-154 (179)
162 TIGR00041 DTMP_kinase thymidyl 98.3 1.5E-05 3.3E-10 80.3 14.9 107 21-127 4-150 (195)
163 cd01673 dNK Deoxyribonucleosid 98.3 4.4E-06 9.5E-11 84.2 10.9 104 22-127 1-147 (193)
164 PRK05416 glmZ(sRNA)-inactivati 98.3 1.3E-05 2.9E-10 86.3 14.9 99 19-125 5-106 (288)
165 PLN02422 dephospho-CoA kinase 98.3 3.6E-06 7.8E-11 87.9 10.0 108 22-148 3-162 (232)
166 PRK14733 coaE dephospho-CoA ki 98.3 4.7E-06 1E-10 85.5 10.6 129 18-163 4-180 (204)
167 PTZ00322 6-phosphofructo-2-kin 98.3 8.1E-06 1.7E-10 97.8 14.0 127 19-148 214-366 (664)
168 cd02023 UMPK Uridine monophosp 98.3 1.7E-05 3.7E-10 80.4 14.3 36 22-57 1-37 (198)
169 KOG0635 Adenosine 5'-phosphosu 98.2 5.5E-06 1.2E-10 79.6 9.6 105 16-122 27-146 (207)
170 cd02030 NDUO42 NADH:Ubiquinone 98.2 1.7E-05 3.7E-10 82.2 13.9 152 22-177 1-216 (219)
171 PRK14731 coaE dephospho-CoA ki 98.2 1.4E-05 2.9E-10 82.3 13.0 35 19-56 4-38 (208)
172 PRK12338 hypothetical protein; 98.2 7.8E-06 1.7E-10 88.8 11.7 105 19-127 3-152 (319)
173 PLN02924 thymidylate kinase 98.2 2.1E-05 4.5E-10 81.7 14.2 107 17-123 13-154 (220)
174 PRK14734 coaE dephospho-CoA ki 98.2 7.9E-06 1.7E-10 83.6 10.2 33 21-56 2-34 (200)
175 PRK12337 2-phosphoglycerate ki 98.2 2E-05 4.3E-10 89.2 14.2 107 18-128 253-407 (475)
176 PLN02199 shikimate kinase 98.2 1.2E-05 2.6E-10 86.3 11.6 96 20-124 102-214 (303)
177 PRK04220 2-phosphoglycerate ki 98.2 1.8E-05 3.9E-10 85.3 12.7 108 18-129 90-239 (301)
178 PF01202 SKI: Shikimate kinase 98.2 2.3E-06 4.9E-11 84.1 5.3 92 29-128 1-108 (158)
179 PTZ00451 dephospho-CoA kinase; 98.2 1.8E-05 3.9E-10 83.3 12.3 126 21-164 2-189 (244)
180 PF13238 AAA_18: AAA domain; P 98.1 2.4E-06 5.2E-11 79.4 5.0 95 23-128 1-115 (129)
181 COG3709 Uncharacterized compon 98.1 0.00011 2.5E-09 71.6 15.7 140 19-175 4-175 (192)
182 PRK07429 phosphoribulokinase; 98.1 3.7E-05 7.9E-10 84.4 13.8 119 17-146 5-163 (327)
183 PLN02772 guanylate kinase 98.1 3.4E-05 7.4E-10 85.8 13.4 139 19-169 134-308 (398)
184 PRK15453 phosphoribulokinase; 98.1 4.3E-05 9.4E-10 81.6 13.2 40 18-57 3-45 (290)
185 PRK05439 pantothenate kinase; 98.1 1.3E-05 2.8E-10 87.1 9.2 109 16-127 82-239 (311)
186 KOG3078 Adenylate kinase [Nucl 98.0 1.1E-05 2.4E-10 83.7 7.7 106 19-129 14-142 (235)
187 COG5075 Uncharacterized conser 98.0 6.9E-06 1.5E-10 83.6 6.0 114 576-698 155-276 (305)
188 PRK13341 recombination factor 98.0 5E-07 1.1E-11 108.3 -2.8 80 232-313 592-681 (725)
189 PRK09270 nucleoside triphospha 98.0 7.4E-05 1.6E-09 77.9 12.9 121 17-146 30-198 (229)
190 PF01121 CoaE: Dephospho-CoA k 98.0 9.7E-06 2.1E-10 81.6 5.5 108 22-148 2-159 (180)
191 cd02025 PanK Pantothenate kina 97.9 3E-05 6.5E-10 80.5 8.8 102 22-127 1-151 (220)
192 PRK13951 bifunctional shikimat 97.9 3.5E-05 7.6E-10 89.0 10.1 95 22-125 2-112 (488)
193 PF01661 Macro: Macro domain; 97.9 1E-06 2.3E-11 81.3 -2.2 98 195-300 18-118 (118)
194 cd02900 Macro_Appr_pase Macro 97.9 2.8E-06 6.2E-11 85.7 0.5 68 237-308 113-186 (186)
195 PRK06761 hypothetical protein; 97.9 4.8E-05 1E-09 81.7 9.6 104 20-128 3-130 (282)
196 cd02029 PRK_like Phosphoribulo 97.9 0.00012 2.5E-09 77.8 12.0 37 22-58 1-40 (277)
197 TIGR00554 panK_bact pantothena 97.9 5.9E-05 1.3E-09 81.4 9.9 40 17-56 59-103 (290)
198 PLN02318 phosphoribulokinase/u 97.8 8.8E-05 1.9E-09 86.1 11.2 40 17-57 62-101 (656)
199 cd02026 PRK Phosphoribulokinas 97.8 0.00013 2.8E-09 78.3 11.8 114 22-146 1-154 (273)
200 PRK13477 bifunctional pantoate 97.8 0.00021 4.6E-09 82.6 13.7 37 19-57 283-319 (512)
201 cd02749 Macro Macro domain, a 97.8 9.5E-06 2.1E-10 78.2 2.0 103 194-304 35-146 (147)
202 PRK07933 thymidylate kinase; V 97.8 0.00048 1E-08 71.2 14.7 106 22-127 2-155 (213)
203 cd02019 NK Nucleoside/nucleoti 97.8 7.1E-05 1.5E-09 63.2 6.9 61 22-113 1-63 (69)
204 COG1428 Deoxynucleoside kinase 97.8 0.00042 9.1E-09 70.8 13.4 157 20-176 4-206 (216)
205 PF00004 AAA: ATPase family as 97.8 0.00011 2.4E-09 68.4 8.7 63 23-85 1-66 (132)
206 TIGR00017 cmk cytidylate kinas 97.7 0.00041 8.9E-09 71.9 13.4 34 20-55 2-35 (217)
207 COG0237 CoaE Dephospho-CoA kin 97.7 0.0001 2.2E-09 75.5 8.4 34 20-56 2-35 (201)
208 PF02223 Thymidylate_kin: Thym 97.7 0.00023 5E-09 71.4 10.7 145 25-174 1-184 (186)
209 PRK03333 coaE dephospho-CoA ki 97.7 0.00012 2.6E-09 82.6 9.2 32 22-56 3-34 (395)
210 PRK13974 thymidylate kinase; P 97.7 0.00048 1.1E-08 71.0 12.9 107 21-127 4-157 (212)
211 PHA00729 NTP-binding motif con 97.7 0.00021 4.6E-09 74.2 10.0 106 19-127 16-141 (226)
212 cd00071 GMPK Guanosine monopho 97.6 0.00035 7.5E-09 67.1 9.5 87 22-114 1-120 (137)
213 PLN02165 adenylate isopentenyl 97.6 0.00049 1.1E-08 75.4 11.7 108 19-128 42-198 (334)
214 COG0125 Tmk Thymidylate kinase 97.5 0.0026 5.6E-08 65.6 15.5 109 20-128 3-151 (208)
215 KOG3877 NADH:ubiquinone oxidor 97.5 0.00072 1.6E-08 71.1 11.4 110 19-128 70-241 (393)
216 PF03668 ATP_bind_2: P-loop AT 97.5 0.0014 3E-08 70.2 13.5 98 21-130 2-108 (284)
217 smart00506 A1pp Appr-1"-p proc 97.5 1.6E-05 3.5E-10 75.1 -1.2 69 230-299 63-132 (133)
218 PRK00091 miaA tRNA delta(2)-is 97.5 0.0011 2.3E-08 72.4 12.6 36 19-56 3-38 (307)
219 COG3896 Chloramphenicol 3-O-ph 97.4 0.0011 2.4E-08 64.5 9.8 115 16-131 19-166 (205)
220 PRK00023 cmk cytidylate kinase 97.4 0.0011 2.3E-08 69.3 10.4 35 20-56 4-38 (225)
221 COG5324 Uncharacterized conser 97.3 0.0018 3.8E-08 72.4 12.1 153 19-175 373-541 (758)
222 COG1085 GalT Galactose-1-phosp 97.3 0.0011 2.4E-08 72.3 9.7 131 566-699 191-329 (338)
223 COG0283 Cmk Cytidylate kinase 97.3 0.012 2.7E-07 60.4 16.3 33 21-55 5-37 (222)
224 PLN02748 tRNA dimethylallyltra 97.2 0.0023 4.9E-08 73.4 11.7 39 16-56 18-56 (468)
225 COG1072 CoaA Panthothenate kin 97.2 0.0013 2.8E-08 69.8 8.8 110 16-129 78-235 (283)
226 cd02901 Macro_Poa1p_like Macro 97.2 7.1E-05 1.5E-09 71.9 -0.6 74 231-305 65-138 (140)
227 PRK05800 cobU adenosylcobinami 97.2 0.00042 9.1E-09 69.2 4.7 32 22-53 3-34 (170)
228 COG2019 AdkA Archaeal adenylat 97.2 0.0035 7.5E-08 61.9 10.8 33 20-53 4-36 (189)
229 PLN00020 ribulose bisphosphate 97.1 0.0011 2.3E-08 73.4 7.8 56 17-72 145-200 (413)
230 PRK13976 thymidylate kinase; P 97.1 0.0045 9.7E-08 63.9 11.9 104 22-125 2-145 (209)
231 PF01745 IPT: Isopentenyl tran 97.1 0.0027 5.8E-08 65.2 9.7 128 21-153 2-165 (233)
232 KOG3308 Uncharacterized protei 97.1 0.0031 6.8E-08 63.9 9.9 37 20-57 4-40 (225)
233 smart00382 AAA ATPases associa 97.1 0.0015 3.3E-08 59.9 7.3 36 21-56 3-41 (148)
234 KOG3220 Similar to bacterial d 97.1 0.0042 9.2E-08 62.9 10.4 96 21-127 2-148 (225)
235 COG2074 2-phosphoglycerate kin 97.0 0.0027 5.7E-08 66.4 9.2 108 15-127 84-232 (299)
236 KOG4238 Bifunctional ATP sulfu 97.0 0.001 2.2E-08 71.9 6.2 106 19-124 49-169 (627)
237 KOG1384 tRNA delta(2)-isopente 97.0 0.005 1.1E-07 66.6 11.1 108 19-128 6-161 (348)
238 PF00448 SRP54: SRP54-type pro 97.0 0.0025 5.3E-08 65.2 8.2 39 20-58 1-42 (196)
239 PRK09087 hypothetical protein; 96.9 0.0052 1.1E-07 64.1 10.6 120 22-149 46-186 (226)
240 PF05496 RuvB_N: Holliday junc 96.9 0.0025 5.5E-08 66.1 7.2 72 21-98 51-122 (233)
241 PRK00771 signal recognition pa 96.9 0.0065 1.4E-07 69.4 11.2 40 18-57 93-135 (437)
242 COG1660 Predicted P-loop-conta 96.9 0.0051 1.1E-07 64.6 9.4 100 21-129 2-108 (286)
243 TIGR01425 SRP54_euk signal rec 96.8 0.011 2.3E-07 67.3 12.7 40 18-57 98-140 (429)
244 PF02744 GalP_UDP_tr_C: Galact 96.8 0.0068 1.5E-07 60.3 9.9 93 576-671 29-126 (166)
245 cd00009 AAA The AAA+ (ATPases 96.8 0.0054 1.2E-07 56.9 8.4 38 19-56 18-58 (151)
246 COG0541 Ffh Signal recognition 96.8 0.0099 2.1E-07 66.7 11.6 41 17-57 97-140 (451)
247 PRK11860 bifunctional 3-phosph 96.8 0.02 4.2E-07 69.1 14.9 36 20-57 442-477 (661)
248 KOG1969 DNA replication checkp 96.8 0.0083 1.8E-07 70.6 11.1 38 16-53 322-359 (877)
249 PF04677 CwfJ_C_1: Protein sim 96.7 0.015 3.3E-07 54.8 10.9 93 570-668 19-111 (121)
250 KOG0744 AAA+-type ATPase [Post 96.7 0.014 3E-07 63.1 11.2 25 21-45 178-202 (423)
251 CHL00195 ycf46 Ycf46; Provisio 96.7 0.0041 8.8E-08 72.0 7.8 55 18-72 257-311 (489)
252 PRK09518 bifunctional cytidyla 96.7 0.0071 1.5E-07 73.4 10.2 33 22-56 3-35 (712)
253 KOG0707 Guanylate kinase [Nucl 96.6 0.015 3.3E-07 60.2 11.0 130 21-163 38-204 (231)
254 PRK10867 signal recognition pa 96.6 0.018 3.9E-07 65.7 12.7 41 17-57 97-141 (433)
255 PF13173 AAA_14: AAA domain 96.6 0.0051 1.1E-07 58.0 7.1 96 21-118 3-101 (128)
256 cd03115 SRP The signal recogni 96.6 0.024 5.3E-07 56.0 12.0 35 22-56 2-39 (173)
257 PRK14974 cell division protein 96.6 0.018 3.9E-07 63.7 11.6 40 18-57 138-180 (336)
258 TIGR02881 spore_V_K stage V sp 96.5 0.01 2.2E-07 63.0 9.4 26 19-44 41-66 (261)
259 PLN02840 tRNA dimethylallyltra 96.5 0.0067 1.4E-07 68.6 8.2 45 10-56 11-55 (421)
260 PHA02544 44 clamp loader, smal 96.5 0.018 3.8E-07 62.7 11.3 39 17-55 40-78 (316)
261 PRK03992 proteasome-activating 96.5 0.0047 1E-07 69.6 7.0 44 19-62 164-207 (389)
262 PF14519 Macro_2: Macro-like d 96.5 0.013 2.7E-07 62.4 9.4 143 314-465 14-176 (280)
263 KOG0738 AAA+-type ATPase [Post 96.5 0.021 4.4E-07 63.2 11.1 64 22-85 247-312 (491)
264 KOG0733 Nuclear AAA ATPase (VC 96.5 0.004 8.6E-08 71.9 5.8 60 19-78 544-603 (802)
265 PF13401 AAA_22: AAA domain; P 96.5 0.012 2.6E-07 54.9 8.2 94 19-114 3-125 (131)
266 TIGR00959 ffh signal recogniti 96.5 0.025 5.4E-07 64.5 12.3 41 17-57 96-140 (428)
267 KOG0234 Fructose-6-phosphate 2 96.4 0.041 8.8E-07 62.0 13.5 133 15-147 23-184 (438)
268 TIGR00064 ftsY signal recognit 96.4 0.026 5.6E-07 60.6 11.7 41 17-57 69-112 (272)
269 KOG2720 Predicted hydrolase (H 96.4 0.0023 5E-08 68.7 3.5 76 586-674 169-248 (431)
270 PHA03132 thymidine kinase; Pro 96.4 0.043 9.3E-07 64.5 14.1 26 20-45 257-282 (580)
271 COG2256 MGS1 ATPase related to 96.4 0.0095 2.1E-07 66.1 8.3 81 20-103 48-131 (436)
272 PRK10416 signal recognition pa 96.4 0.034 7.5E-07 61.0 12.6 40 18-57 112-154 (318)
273 PRK08084 DNA replication initi 96.4 0.016 3.4E-07 60.8 9.6 24 21-44 46-69 (235)
274 PRK06620 hypothetical protein; 96.3 0.029 6.2E-07 58.1 11.0 25 21-45 45-69 (214)
275 KOG2958 Galactose-1-phosphate 96.3 0.0065 1.4E-07 64.1 6.1 108 564-674 203-318 (354)
276 cd00544 CobU Adenosylcobinamid 96.3 0.0066 1.4E-07 60.6 6.1 32 22-53 1-32 (169)
277 PTZ00454 26S protease regulato 96.3 0.0075 1.6E-07 68.2 7.2 35 19-53 178-212 (398)
278 KOG0739 AAA+-type ATPase [Post 96.3 0.0059 1.3E-07 65.2 5.8 64 22-85 168-233 (439)
279 PRK05201 hslU ATP-dependent pr 96.3 0.0068 1.5E-07 68.4 6.6 43 20-62 50-93 (443)
280 PF07728 AAA_5: AAA domain (dy 96.3 0.004 8.7E-08 59.2 4.1 30 23-52 2-31 (139)
281 PTZ00361 26 proteosome regulat 96.3 0.009 1.9E-07 68.2 7.5 38 19-56 216-253 (438)
282 KOG2702 Predicted panthothenat 96.2 0.0063 1.4E-07 62.8 5.2 31 15-45 114-144 (323)
283 KOG0733 Nuclear AAA ATPase (VC 96.2 0.009 2E-07 69.1 6.8 67 19-85 222-290 (802)
284 TIGR01242 26Sp45 26S proteasom 96.2 0.0083 1.8E-07 66.9 6.6 34 20-53 156-189 (364)
285 PRK12724 flagellar biosynthesi 96.2 0.033 7.1E-07 63.1 11.1 39 19-57 222-264 (432)
286 PRK12377 putative replication 96.2 0.014 3E-07 61.8 7.8 102 21-122 102-214 (248)
287 KOG0780 Signal recognition par 96.1 0.031 6.7E-07 61.7 10.2 101 15-115 96-225 (483)
288 TIGR00390 hslU ATP-dependent p 96.1 0.012 2.5E-07 66.5 7.1 44 19-62 46-90 (441)
289 PRK11889 flhF flagellar biosyn 96.1 0.031 6.8E-07 62.7 10.2 39 19-57 240-281 (436)
290 COG1618 Predicted nucleotide k 96.1 0.058 1.3E-06 53.2 10.9 27 19-45 4-30 (179)
291 PRK14722 flhF flagellar biosyn 96.1 0.025 5.5E-07 63.3 9.5 72 19-90 136-228 (374)
292 CHL00181 cbbX CbbX; Provisiona 96.1 0.021 4.6E-07 61.8 8.6 64 21-86 60-131 (287)
293 TIGR03499 FlhF flagellar biosy 96.0 0.016 3.4E-07 62.6 7.6 39 19-57 193-236 (282)
294 PRK12726 flagellar biosynthesi 96.0 0.044 9.5E-07 61.3 11.1 41 18-58 204-247 (407)
295 smart00763 AAA_PrkA PrkA AAA d 96.0 0.0053 1.1E-07 68.0 3.7 28 18-45 76-103 (361)
296 TIGR01618 phage_P_loop phage n 96.0 0.0075 1.6E-07 62.7 4.6 34 18-55 10-43 (220)
297 TIGR00174 miaA tRNA isopenteny 96.0 0.014 3E-07 63.1 6.7 33 22-56 1-33 (287)
298 TIGR01243 CDC48 AAA family ATP 95.9 0.017 3.6E-07 70.5 7.9 54 19-72 486-539 (733)
299 PRK13342 recombination factor 95.9 0.045 9.7E-07 62.2 10.7 77 20-99 36-115 (413)
300 PHA02244 ATPase-like protein 95.9 0.024 5.2E-07 63.1 8.0 66 23-90 122-193 (383)
301 TIGR02880 cbbX_cfxQ probable R 95.8 0.036 7.8E-07 59.9 9.2 65 22-87 60-131 (284)
302 cd01120 RecA-like_NTPases RecA 95.8 0.051 1.1E-06 51.8 9.4 33 22-54 1-36 (165)
303 PRK04195 replication factor C 95.8 0.05 1.1E-06 63.2 10.9 36 20-55 39-74 (482)
304 COG0464 SpoVK ATPases of the A 95.8 0.019 4.1E-07 66.7 7.4 59 18-76 274-332 (494)
305 PRK00080 ruvB Holliday junctio 95.8 0.018 3.8E-07 63.4 6.8 62 20-87 51-112 (328)
306 PRK08116 hypothetical protein; 95.8 0.025 5.5E-07 60.6 7.7 103 20-122 114-229 (268)
307 TIGR01241 FtsH_fam ATP-depende 95.8 0.011 2.4E-07 68.7 5.3 38 19-56 87-124 (495)
308 PRK12723 flagellar biosynthesi 95.7 0.022 4.8E-07 64.1 7.3 40 18-57 172-218 (388)
309 TIGR00635 ruvB Holliday juncti 95.7 0.02 4.4E-07 61.8 6.9 63 19-87 29-91 (305)
310 PLN03103 GDP-L-galactose-hexos 95.7 0.019 4.2E-07 64.1 6.7 72 582-666 168-243 (403)
311 PF03029 ATP_bind_1: Conserved 95.7 0.0094 2E-07 62.8 3.8 30 25-54 1-33 (238)
312 PRK08727 hypothetical protein; 95.7 0.099 2.1E-06 54.7 11.4 23 21-43 42-64 (233)
313 PRK14961 DNA polymerase III su 95.6 0.067 1.5E-06 59.8 10.7 28 18-45 36-63 (363)
314 PRK14962 DNA polymerase III su 95.6 0.052 1.1E-06 62.8 9.9 27 19-45 35-61 (472)
315 PRK14956 DNA polymerase III su 95.6 0.065 1.4E-06 61.8 10.4 108 19-126 39-172 (484)
316 COG1419 FlhF Flagellar GTP-bin 95.6 0.088 1.9E-06 59.1 11.1 80 20-99 203-306 (407)
317 PRK05342 clpX ATP-dependent pr 95.6 0.026 5.6E-07 64.1 7.1 36 21-56 109-144 (412)
318 KOG1533 Predicted GTPase [Gene 95.6 0.0088 1.9E-07 62.0 2.9 58 23-80 5-71 (290)
319 PRK06893 DNA replication initi 95.5 0.12 2.7E-06 53.8 11.6 24 21-44 40-63 (229)
320 TIGR03689 pup_AAA proteasome A 95.5 0.026 5.6E-07 65.6 7.1 27 19-45 215-241 (512)
321 PRK14723 flhF flagellar biosyn 95.5 0.06 1.3E-06 65.2 10.1 71 19-90 184-276 (767)
322 COG0466 Lon ATP-dependent Lon 95.5 0.026 5.6E-07 66.7 6.8 37 21-57 351-387 (782)
323 cd01131 PilT Pilus retraction 95.5 0.13 2.8E-06 52.4 11.3 24 22-45 3-26 (198)
324 PLN03046 D-glycerate 3-kinase; 95.5 0.019 4E-07 64.8 5.3 40 18-57 210-252 (460)
325 TIGR01243 CDC48 AAA family ATP 95.5 0.029 6.3E-07 68.4 7.5 67 19-85 211-279 (733)
326 TIGR00150 HI0065_YjeE ATPase, 95.4 0.015 3.3E-07 55.7 3.8 27 19-45 21-47 (133)
327 PRK05642 DNA replication initi 95.4 0.075 1.6E-06 55.7 9.3 36 21-56 46-84 (234)
328 PRK07952 DNA replication prote 95.4 0.041 8.9E-07 58.2 7.3 102 21-122 100-213 (244)
329 PRK04296 thymidine kinase; Pro 95.4 0.13 2.7E-06 52.2 10.6 91 21-113 3-116 (190)
330 PLN02796 D-glycerate 3-kinase 95.3 0.021 4.6E-07 63.0 5.2 28 18-45 98-125 (347)
331 PF01695 IstB_IS21: IstB-like 95.3 0.011 2.3E-07 59.6 2.6 102 20-125 47-161 (178)
332 KOG0730 AAA+-type ATPase [Post 95.3 0.03 6.6E-07 65.5 6.5 56 18-73 466-521 (693)
333 TIGR03420 DnaA_homol_Hda DnaA 95.3 0.025 5.4E-07 58.1 5.3 62 18-87 36-100 (226)
334 cd03331 Macro_Poa1p_like_SNF2 95.3 0.15 3.2E-06 50.1 10.4 122 345-476 2-130 (152)
335 CHL00176 ftsH cell division pr 95.3 0.028 6.1E-07 67.2 6.4 37 20-56 216-252 (638)
336 cd01130 VirB11-like_ATPase Typ 95.3 0.19 4.2E-06 50.5 11.6 108 19-128 24-150 (186)
337 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.083 1.8E-06 51.0 8.5 85 19-103 25-117 (144)
338 KOG4235 Mitochondrial thymidin 95.2 0.19 4.2E-06 51.0 11.0 141 1-144 1-190 (244)
339 TIGR01650 PD_CobS cobaltochela 95.2 0.02 4.4E-07 62.8 4.5 32 22-53 66-97 (327)
340 PRK12402 replication factor C 95.2 0.11 2.3E-06 56.8 10.2 24 22-45 38-61 (337)
341 COG1126 GlnQ ABC-type polar am 95.2 0.015 3.1E-07 60.0 3.0 24 19-42 27-50 (240)
342 PRK06921 hypothetical protein; 95.1 0.067 1.4E-06 57.3 8.1 100 20-120 117-231 (266)
343 TIGR02640 gas_vesic_GvpN gas v 95.1 0.023 5E-07 60.6 4.6 32 22-53 23-54 (262)
344 PLN03025 replication factor C 95.1 0.092 2E-06 57.5 9.4 25 19-44 34-58 (319)
345 PF13521 AAA_28: AAA domain; P 95.0 0.022 4.8E-07 55.8 3.9 26 23-51 2-27 (163)
346 TIGR00362 DnaA chromosomal rep 95.0 0.23 5E-06 56.2 12.6 36 21-56 137-177 (405)
347 COG1224 TIP49 DNA helicase TIP 95.0 0.04 8.7E-07 60.4 5.9 55 21-75 66-122 (450)
348 PRK12323 DNA polymerase III su 95.0 0.14 3.1E-06 60.8 11.0 110 17-126 35-175 (700)
349 cd01394 radB RadB. The archaea 95.0 0.089 1.9E-06 54.0 8.4 37 19-55 18-57 (218)
350 PF05729 NACHT: NACHT domain 95.0 0.02 4.4E-07 55.1 3.3 24 22-45 2-25 (166)
351 COG1222 RPT1 ATP-dependent 26S 94.9 0.033 7.2E-07 61.1 5.2 59 19-77 184-242 (406)
352 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.053 1.2E-06 56.8 6.7 69 19-87 20-91 (237)
353 PRK05703 flhF flagellar biosyn 94.9 0.092 2E-06 60.0 9.1 38 20-57 221-263 (424)
354 PRK14955 DNA polymerase III su 94.9 0.14 3.1E-06 57.9 10.5 28 18-45 36-63 (397)
355 COG0324 MiaA tRNA delta(2)-iso 94.9 0.063 1.4E-06 58.5 7.2 36 19-56 2-37 (308)
356 PRK14957 DNA polymerase III su 94.9 0.22 4.7E-06 58.6 12.2 27 19-45 37-63 (546)
357 PRK12727 flagellar biosynthesi 94.9 0.17 3.6E-06 59.0 10.9 70 20-90 350-441 (559)
358 PRK08181 transposase; Validate 94.9 0.056 1.2E-06 58.0 6.7 102 21-122 107-217 (269)
359 PRK07003 DNA polymerase III su 94.9 0.12 2.7E-06 62.2 10.0 109 18-126 36-170 (830)
360 PF06068 TIP49: TIP49 C-termin 94.9 0.04 8.6E-07 61.1 5.6 53 21-73 51-105 (398)
361 KOG0741 AAA+-type ATPase [Post 94.9 0.089 1.9E-06 60.3 8.4 126 22-175 258-388 (744)
362 PF06745 KaiC: KaiC; InterPro 94.9 0.019 4.1E-07 59.5 3.0 68 19-86 18-89 (226)
363 PRK09183 transposase/IS protei 94.8 0.074 1.6E-06 56.7 7.5 102 21-122 103-214 (259)
364 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.06 1.3E-06 55.8 6.7 35 19-53 19-56 (229)
365 PRK12422 chromosomal replicati 94.8 0.28 6E-06 56.5 12.6 35 22-56 143-180 (445)
366 PRK00440 rfc replication facto 94.8 0.12 2.7E-06 55.8 9.4 23 22-44 40-62 (319)
367 PRK00149 dnaA chromosomal repl 94.8 0.27 5.9E-06 56.5 12.6 35 22-56 150-189 (450)
368 PF00308 Bac_DnaA: Bacterial d 94.8 0.23 5E-06 51.6 10.9 122 22-148 36-198 (219)
369 PRK14960 DNA polymerase III su 94.8 0.19 4.1E-06 59.9 11.3 28 18-45 35-62 (702)
370 PF13245 AAA_19: Part of AAA d 94.8 0.028 6.1E-07 48.6 3.4 23 20-42 10-32 (76)
371 PRK09435 membrane ATPase/prote 94.8 0.033 7.1E-07 61.5 4.7 39 17-55 53-94 (332)
372 cd04163 Era Era subfamily. Er 94.8 0.15 3.3E-06 48.2 8.9 24 20-43 3-26 (168)
373 PRK06835 DNA replication prote 94.8 0.066 1.4E-06 59.1 7.1 101 21-122 184-297 (329)
374 cd03222 ABC_RNaseL_inhibitor T 94.7 0.12 2.6E-06 52.0 8.3 81 19-99 24-113 (177)
375 cd00984 DnaB_C DnaB helicase C 94.7 0.27 5.8E-06 51.2 11.4 35 19-53 12-50 (242)
376 KOG1532 GTPase XAB1, interacts 94.7 0.051 1.1E-06 57.6 5.7 29 16-44 15-43 (366)
377 cd03223 ABCD_peroxisomal_ALDP 94.7 0.2 4.4E-06 49.4 9.7 26 19-44 26-51 (166)
378 PF04665 Pox_A32: Poxvirus A32 94.7 0.16 3.5E-06 53.6 9.4 29 18-46 11-39 (241)
379 PRK14958 DNA polymerase III su 94.7 0.17 3.7E-06 59.2 10.5 28 18-45 36-63 (509)
380 PRK06526 transposase; Provisio 94.7 0.045 9.8E-07 58.2 5.3 103 20-122 98-209 (254)
381 PRK10751 molybdopterin-guanine 94.6 0.033 7.2E-07 55.8 4.0 27 19-45 5-31 (173)
382 PF02367 UPF0079: Uncharacteri 94.6 0.038 8.2E-07 52.3 4.2 28 18-45 13-40 (123)
383 KOG0651 26S proteasome regulat 94.6 0.082 1.8E-06 57.1 7.1 57 19-75 165-221 (388)
384 cd01124 KaiC KaiC is a circadi 94.6 0.05 1.1E-06 54.1 5.3 33 22-54 1-36 (187)
385 PRK14952 DNA polymerase III su 94.6 0.32 7E-06 57.7 12.8 109 18-126 33-169 (584)
386 COG0396 sufC Cysteine desulfur 94.6 0.027 5.9E-07 58.5 3.4 40 19-60 29-68 (251)
387 PRK14964 DNA polymerase III su 94.6 0.22 4.8E-06 57.8 11.2 109 19-127 34-168 (491)
388 PRK14963 DNA polymerase III su 94.6 0.15 3.3E-06 59.5 9.9 29 17-45 33-61 (504)
389 PF13189 Cytidylate_kin2: Cyti 94.6 0.26 5.6E-06 49.5 10.4 96 22-127 1-136 (179)
390 PRK07764 DNA polymerase III su 94.6 0.19 4.1E-06 61.9 11.1 109 19-127 36-172 (824)
391 PF07724 AAA_2: AAA domain (Cd 94.6 0.051 1.1E-06 54.3 5.2 38 21-58 4-45 (171)
392 cd00820 PEPCK_HprK Phosphoenol 94.6 0.043 9.3E-07 50.7 4.3 33 20-56 15-47 (107)
393 COG0467 RAD55 RecA-superfamily 94.6 0.038 8.2E-07 58.6 4.5 70 18-87 21-93 (260)
394 KOG0731 AAA+-type ATPase conta 94.5 0.049 1.1E-06 65.4 5.7 37 20-56 344-380 (774)
395 PRK14949 DNA polymerase III su 94.5 0.21 4.6E-06 61.3 11.0 28 18-45 36-63 (944)
396 PF07726 AAA_3: ATPase family 94.5 0.031 6.7E-07 53.2 3.2 30 23-52 2-31 (131)
397 PF13191 AAA_16: AAA ATPase do 94.5 0.028 6.2E-07 55.4 3.2 30 16-45 20-49 (185)
398 KOG0734 AAA+-type ATPase conta 94.5 0.056 1.2E-06 61.9 5.7 38 19-56 336-373 (752)
399 PRK08099 bifunctional DNA-bind 94.5 0.069 1.5E-06 60.5 6.4 38 19-56 218-256 (399)
400 PRK14721 flhF flagellar biosyn 94.4 0.16 3.6E-06 57.7 9.4 71 19-90 190-282 (420)
401 COG5192 BMS1 GTP-binding prote 94.4 0.14 3.1E-06 58.6 8.7 33 13-45 62-94 (1077)
402 PRK08533 flagellar accessory p 94.4 0.065 1.4E-06 56.1 5.7 36 19-54 23-61 (230)
403 PRK06645 DNA polymerase III su 94.4 0.28 6.1E-06 57.3 11.3 27 19-45 42-68 (507)
404 PRK14729 miaA tRNA delta(2)-is 94.3 0.12 2.7E-06 56.2 7.8 34 20-56 4-37 (300)
405 COG1855 ATPase (PilT family) [ 94.3 0.029 6.2E-07 63.1 3.0 24 22-45 265-288 (604)
406 PTZ00202 tuzin; Provisional 94.3 0.2 4.4E-06 56.9 9.6 34 19-52 285-318 (550)
407 PRK13900 type IV secretion sys 94.3 0.48 1E-05 52.5 12.6 106 20-126 160-283 (332)
408 COG1117 PstB ABC-type phosphat 94.3 0.048 1E-06 56.2 4.3 27 18-44 31-57 (253)
409 PRK10733 hflB ATP-dependent me 94.3 0.072 1.6E-06 64.1 6.5 35 22-56 187-221 (644)
410 PRK14086 dnaA chromosomal repl 94.3 0.31 6.7E-06 57.8 11.4 35 22-56 316-355 (617)
411 PRK04328 hypothetical protein; 94.3 0.11 2.4E-06 55.0 7.1 68 19-86 22-92 (249)
412 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.28 6.2E-06 47.6 9.5 79 21-99 26-122 (157)
413 PF10662 PduV-EutP: Ethanolami 94.2 0.086 1.9E-06 51.2 5.7 22 23-44 4-25 (143)
414 cd03216 ABC_Carb_Monos_I This 94.2 0.33 7.2E-06 47.8 10.0 80 20-99 26-124 (163)
415 KOG0737 AAA+-type ATPase [Post 94.2 0.063 1.4E-06 59.2 5.2 55 18-72 125-179 (386)
416 TIGR03707 PPK2_P_aer polyphosp 94.2 0.51 1.1E-05 49.5 11.7 109 17-130 28-161 (230)
417 PRK06995 flhF flagellar biosyn 94.1 0.15 3.3E-06 59.0 8.4 39 19-57 255-298 (484)
418 TIGR00382 clpX endopeptidase C 94.1 0.049 1.1E-06 61.8 4.3 33 21-53 117-149 (413)
419 TIGR00101 ureG urease accessor 94.1 0.07 1.5E-06 54.6 5.1 26 20-45 1-26 (199)
420 PRK08903 DnaA regulatory inact 94.1 0.29 6.4E-06 50.6 9.9 34 20-53 42-78 (227)
421 PF00910 RNA_helicase: RNA hel 94.1 0.036 7.8E-07 50.8 2.7 23 23-45 1-23 (107)
422 PF03215 Rad17: Rad17 cell cyc 94.1 0.057 1.2E-06 63.1 4.9 31 16-46 41-71 (519)
423 TIGR02397 dnaX_nterm DNA polym 94.1 0.46 9.9E-06 52.4 11.9 28 18-45 34-61 (355)
424 PRK09169 hypothetical protein; 94.0 0.13 2.8E-06 67.5 8.2 96 22-126 2112-2221(2316)
425 COG2255 RuvB Holliday junction 94.0 0.081 1.7E-06 56.6 5.4 62 22-89 54-115 (332)
426 cd00983 recA RecA is a bacter 94.0 0.19 4.1E-06 55.3 8.5 35 19-53 54-91 (325)
427 PRK06731 flhF flagellar biosyn 94.0 0.3 6.5E-06 52.5 9.8 38 19-56 74-114 (270)
428 PF03266 NTPase_1: NTPase; In 94.0 0.043 9.3E-07 54.7 3.2 22 23-44 2-23 (168)
429 COG4240 Predicted kinase [Gene 94.0 0.11 2.3E-06 54.0 6.0 41 16-56 46-90 (300)
430 PF08477 Miro: Miro-like prote 94.0 0.047 1E-06 49.9 3.2 22 23-44 2-23 (119)
431 KOG0735 AAA+-type ATPase [Post 93.9 0.32 6.9E-06 57.7 10.4 64 20-83 701-764 (952)
432 TIGR03015 pepcterm_ATPase puta 93.9 0.047 1E-06 57.7 3.6 26 20-45 43-68 (269)
433 PRK13768 GTPase; Provisional 93.9 0.068 1.5E-06 56.7 4.8 37 19-55 1-40 (253)
434 cd01122 GP4d_helicase GP4d_hel 93.9 0.42 9.2E-06 50.7 10.8 34 20-53 30-67 (271)
435 TIGR00672 cdh CDP-diacylglycer 93.9 0.12 2.6E-06 54.3 6.4 36 574-612 52-87 (250)
436 KOG2004 Mitochondrial ATP-depe 93.9 0.069 1.5E-06 63.1 5.0 98 20-117 438-552 (906)
437 cd01918 HprK_C HprK/P, the bif 93.8 0.063 1.4E-06 52.5 4.0 33 21-56 15-47 (149)
438 TIGR00750 lao LAO/AO transport 93.8 0.079 1.7E-06 57.6 5.2 41 16-56 30-73 (300)
439 PRK05471 CDP-diacylglycerol py 93.8 0.13 2.9E-06 54.0 6.5 37 574-613 53-89 (252)
440 COG2884 FtsE Predicted ATPase 93.8 0.44 9.5E-06 48.5 9.8 26 19-44 27-52 (223)
441 PRK09361 radB DNA repair and r 93.8 0.11 2.4E-06 53.7 5.9 54 1-54 1-60 (225)
442 PRK14088 dnaA chromosomal repl 93.7 0.58 1.3E-05 53.8 12.1 34 22-55 132-170 (440)
443 TIGR00678 holB DNA polymerase 93.7 0.72 1.6E-05 46.3 11.5 28 18-45 12-39 (188)
444 PRK14954 DNA polymerase III su 93.7 0.64 1.4E-05 55.6 12.7 27 19-45 37-63 (620)
445 PF13479 AAA_24: AAA domain 93.6 0.16 3.4E-06 52.4 6.8 22 19-40 2-23 (213)
446 CHL00206 ycf2 Ycf2; Provisiona 93.6 0.11 2.5E-06 67.4 6.7 40 19-58 1629-1668(2281)
447 TIGR02639 ClpA ATP-dependent C 93.6 0.12 2.7E-06 63.0 6.8 65 21-85 204-282 (731)
448 cd03228 ABCC_MRP_Like The MRP 93.6 0.58 1.3E-05 46.3 10.5 26 19-44 27-52 (171)
449 PRK12269 bifunctional cytidyla 93.6 0.059 1.3E-06 66.4 4.0 34 21-56 35-68 (863)
450 PRK05896 DNA polymerase III su 93.5 0.48 1E-05 56.2 11.3 27 19-45 37-63 (605)
451 COG1223 Predicted ATPase (AAA+ 93.5 0.6 1.3E-05 49.5 10.6 40 17-56 148-187 (368)
452 PF02611 CDH: CDP-diacylglycer 93.5 0.12 2.7E-06 53.5 5.7 39 572-613 22-60 (222)
453 PF01926 MMR_HSR1: 50S ribosom 93.5 0.06 1.3E-06 49.4 3.0 20 23-42 2-21 (116)
454 PF03205 MobB: Molybdopterin g 93.5 0.069 1.5E-06 51.6 3.5 24 22-45 2-25 (140)
455 PRK08939 primosomal protein Dn 93.5 0.23 4.9E-06 54.4 7.9 104 20-123 156-270 (306)
456 COG0552 FtsY Signal recognitio 93.5 0.14 3E-06 56.0 6.1 41 17-57 136-179 (340)
457 PF13555 AAA_29: P-loop contai 93.4 0.075 1.6E-06 44.2 3.2 22 22-43 25-46 (62)
458 TIGR01420 pilT_fam pilus retra 93.4 0.66 1.4E-05 51.5 11.7 106 20-126 122-243 (343)
459 COG0378 HypB Ni2+-binding GTPa 93.4 0.097 2.1E-06 53.2 4.6 40 18-57 10-52 (202)
460 TIGR02012 tigrfam_recA protein 93.4 0.22 4.8E-06 54.8 7.7 35 19-53 54-91 (321)
461 TIGR03709 PPK2_rel_1 polyphosp 93.4 0.68 1.5E-05 49.5 11.1 108 18-129 54-185 (264)
462 PRK00411 cdc6 cell division co 93.4 0.21 4.7E-06 55.9 7.9 36 18-53 53-93 (394)
463 PF00931 NB-ARC: NB-ARC domain 93.4 0.24 5.1E-06 52.7 7.8 26 18-43 17-42 (287)
464 PF00005 ABC_tran: ABC transpo 93.4 0.057 1.2E-06 50.9 2.7 25 20-44 11-35 (137)
465 PRK10463 hydrogenase nickel in 93.3 0.1 2.3E-06 56.4 5.0 38 18-55 102-141 (290)
466 PF03796 DnaB_C: DnaB-like hel 93.3 0.3 6.6E-06 51.7 8.5 94 20-113 19-138 (259)
467 TIGR02655 circ_KaiC circadian 93.3 0.086 1.9E-06 61.3 4.6 36 19-54 20-59 (484)
468 KOG1534 Putative transcription 93.3 0.074 1.6E-06 54.5 3.5 36 21-56 4-42 (273)
469 PRK14970 DNA polymerase III su 93.2 0.43 9.2E-06 53.3 9.9 28 18-45 37-64 (367)
470 PRK08691 DNA polymerase III su 93.2 0.45 9.7E-06 57.2 10.4 29 17-45 35-63 (709)
471 PRK14969 DNA polymerase III su 93.2 0.4 8.6E-06 56.4 9.9 28 18-45 36-63 (527)
472 TIGR00073 hypB hydrogenase acc 93.2 0.083 1.8E-06 54.1 3.8 40 16-55 18-59 (207)
473 PRK14950 DNA polymerase III su 93.1 0.45 9.7E-06 56.7 10.4 27 19-45 37-63 (585)
474 COG1219 ClpX ATP-dependent pro 93.1 0.17 3.7E-06 55.0 6.1 37 20-56 97-133 (408)
475 PRK07994 DNA polymerase III su 93.1 0.44 9.6E-06 57.1 10.2 28 18-45 36-63 (647)
476 TIGR00763 lon ATP-dependent pr 93.1 0.16 3.5E-06 62.4 6.8 33 21-53 348-380 (775)
477 TIGR00176 mobB molybdopterin-g 93.1 0.07 1.5E-06 52.4 3.0 23 22-44 1-23 (155)
478 PRK00089 era GTPase Era; Revie 93.0 0.59 1.3E-05 50.3 10.3 24 19-42 4-27 (292)
479 KOG0727 26S proteasome regulat 93.0 0.11 2.3E-06 54.7 4.2 37 19-55 188-224 (408)
480 TIGR03708 poly_P_AMP_trns poly 93.0 0.77 1.7E-05 53.3 11.6 109 17-129 37-169 (493)
481 PRK15455 PrkA family serine pr 93.0 0.072 1.6E-06 62.3 3.3 27 19-45 102-128 (644)
482 cd03114 ArgK-like The function 92.9 0.091 2E-06 51.2 3.5 34 22-55 1-37 (148)
483 PF13894 zf-C2H2_4: C2H2-type 92.8 0.052 1.1E-06 35.2 1.1 23 716-738 2-24 (24)
484 PF02492 cobW: CobW/HypB/UreG, 92.8 0.15 3.2E-06 51.0 4.9 32 22-53 2-35 (178)
485 TIGR01526 nadR_NMN_Atrans nico 92.8 0.11 2.4E-06 57.2 4.4 28 21-48 163-190 (325)
486 TIGR02237 recomb_radB DNA repa 92.8 0.11 2.4E-06 53.0 4.0 36 19-54 11-49 (209)
487 KOG0742 AAA+-type ATPase [Post 92.8 0.26 5.7E-06 55.0 7.0 36 21-56 385-420 (630)
488 cd01129 PulE-GspE PulE/GspE Th 92.8 0.68 1.5E-05 49.5 10.2 104 20-124 80-195 (264)
489 PRK14951 DNA polymerase III su 92.8 0.63 1.4E-05 55.6 10.8 29 17-45 35-63 (618)
490 PRK06067 flagellar accessory p 92.7 0.1 2.2E-06 54.4 3.8 35 19-53 24-61 (234)
491 TIGR02788 VirB11 P-type DNA tr 92.7 1.3 2.9E-05 48.4 12.6 26 20-45 144-169 (308)
492 PF00096 zf-C2H2: Zinc finger, 92.7 0.042 9.1E-07 35.9 0.6 22 716-737 2-23 (23)
493 PRK14490 putative bifunctional 92.7 0.12 2.5E-06 58.0 4.4 28 18-45 3-30 (369)
494 COG0470 HolB ATPase involved i 92.7 0.61 1.3E-05 50.4 9.9 28 18-45 22-49 (325)
495 PF01443 Viral_helicase1: Vira 92.7 0.075 1.6E-06 54.8 2.6 21 23-43 1-21 (234)
496 TIGR02525 plasmid_TraJ plasmid 92.7 0.83 1.8E-05 51.4 11.0 103 21-125 150-272 (372)
497 PRK05564 DNA polymerase III su 92.6 0.7 1.5E-05 50.5 10.3 111 17-127 23-145 (313)
498 COG2805 PilT Tfp pilus assembl 92.6 0.22 4.8E-06 53.8 6.0 79 19-97 124-217 (353)
499 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.15 3.3E-06 54.3 4.8 36 19-54 35-73 (259)
500 PRK10646 ADP-binding protein; 92.5 0.13 2.8E-06 50.6 3.8 27 19-45 27-53 (153)
No 1
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=100.00 E-value=2.4e-47 Score=359.59 Aligned_cols=181 Identities=46% Similarity=0.754 Sum_probs=162.1
Q ss_pred hhHHHHHhhhcCCCCCCCcEEEEc-CcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhh
Q 004319 559 SWAQALYRTAMYPERHKDDLLEIS-DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFL 637 (761)
Q Consensus 559 ~w~~~L~~~~~~Pe~~p~~vvyed-d~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~ 637 (761)
+|+.++..++..||. |+.+. |++|+|+|.||||+.|+||+||...|+++.++..+++.+|.+|..++..|.....
T Consensus 2 sw~~~i~~~i~k~e~----V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~ 77 (184)
T KOG0562|consen 2 SWHEAIVMDIPKPEN----VYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLT 77 (184)
T ss_pred chhhhhhhcCCccce----eeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhc
Confidence 688777766666665 55555 7999999999999999999997678999999999999999999999999998876
Q ss_pred ccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCCCCccchhhhccCCccc
Q 004319 638 HEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRC 717 (761)
Q Consensus 638 ~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~~~~~~~~~~l~~~l~C 717 (761)
.++....|++||||+|||.||||||||+||+|++||||||||||||+||++++++.+++.+.|+.+..... ||+.||+|
T Consensus 78 ~~~~~~~f~vG~HavPSM~~LHLHVISkDf~S~sLKNKKHwnSFnT~fFv~~~~~~~~~~~~G~~t~~~~~-llk~dLrC 156 (184)
T KOG0562|consen 78 NEALCNYFRVGFHAVPSMNNLHLHVISKDFVSPSLKNKKHWNSFNTEFFVKSDDVTENVPTRGTATVLFTT-LLKEDLRC 156 (184)
T ss_pred chhhhhheeeeeccCcchhheeEEEeecccCCchhccchhhcccCccceeeccchhhhhhccccchhhhhh-hhccceee
Confidence 66666789999999999999999999999999999999999999999999999999999999998765544 99999999
Q ss_pred ccCCCCCCChHHHHHHHhhcCCCCCcc
Q 004319 718 HRCRSAHPSIPRLKSHISSCRAPFPSS 744 (761)
Q Consensus 718 ~~C~~~~~n~~~LK~Hl~~~~~~~~~~ 744 (761)
|||+..-++||+||+||+.|-..+|.+
T Consensus 157 ~~Cq~~~~~~~kLK~Hl~~~~~q~~d~ 183 (184)
T KOG0562|consen 157 WRCQTFGPHFPKLKAHLREEYDQWLDK 183 (184)
T ss_pred hhhhhcccccHHHHHHHHHHHhhcccc
Confidence 999943356999999999999888865
No 2
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.95 E-value=8.5e-28 Score=230.74 Aligned_cols=111 Identities=21% Similarity=0.271 Sum_probs=102.0
Q ss_pred EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 004319 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423 (761)
Q Consensus 344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~ 423 (761)
+|.|++||||++. +|||||+||..|. ++|||++||+++||++|++||++. +++++|++++|+ +++
T Consensus 2 ki~l~~GdIt~~~------vDaIVNaan~~l~-~~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~-------~~~ 66 (140)
T cd02905 2 RIVLWEGDICNLN------VDAIVNSTNETLT-DKNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTK-------GYN 66 (140)
T ss_pred eEEEEeCccCccc------CCEEEeCCccccC-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEec-------CCC
Confidence 5889999999997 9999999999999 899999999999999999999987 779999999999 589
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 424 l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
|+|+||||+|||.|+.... .++.++|++||+++|++| .|||||+++
T Consensus 67 L~~k~VIH~vgP~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~ 117 (140)
T cd02905 67 LPARFIIHTVGPKYNVKYR-------TAAENALYSCYRNVLQLAKELGLESIALCVIS 117 (140)
T ss_pred CCccEEEEecCCccCCCCC-------cHHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 9999999999999987543 246789999999999997 699999997
No 3
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=99.94 E-value=2.7e-27 Score=236.31 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=103.0
Q ss_pred cCCeEEEEEEccc--ccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecC
Q 004319 340 INPKKFFTFVGDI--TRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL 414 (761)
Q Consensus 340 ~~~~~l~v~~GDI--t~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l 414 (761)
+.+.+|+|++||| |++. +||||||||.+|. ++|||++||+++||++|++||+++. +++++|++++|+
T Consensus 15 ~~~~~i~i~~gDI~~t~~~------vDaIVNaaN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~- 86 (186)
T cd02904 15 FLGQKLSLVQSDISIGSID------VEGIVHPTNADID-LKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQ- 86 (186)
T ss_pred cCCCEEEEEECCcccccee------ccEEEcCCccccC-CCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEcc-
Confidence 4568899999999 9987 9999999999999 8999999999999999999998763 789999999999
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||||||.|+.. +..++|++||++||++| .|||||+|+
T Consensus 87 ------a~~Lp~k~VIHtVgP~~~~~----------~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIs 137 (186)
T cd02904 87 ------AHGLPAKFVIHCHSPQWGSD----------KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLP 137 (186)
T ss_pred ------CCCCCCCEEEEeCCCCCCCC----------chHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 58899999999999999642 24789999999999997 699999997
No 4
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.94 E-value=1.1e-26 Score=216.36 Aligned_cols=112 Identities=40% Similarity=0.600 Sum_probs=87.4
Q ss_pred HhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCce
Q 004319 565 YRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASL 643 (761)
Q Consensus 565 ~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~ 643 (761)
+.++...+. |+.+||+||++|+|.|+||+|+.|+|||||+.||.++.+|+.+|+++|++|.+.+.+++++.... ....
T Consensus 4 f~~i~~~~~-~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~ 82 (116)
T PF11969_consen 4 FCIIIRGEE-PERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSD 82 (116)
T ss_dssp HHHHTTSSS-GGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGG
T ss_pred ceEeEcCCC-CCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 345555555 77899999999999999999999999999955999999999999999999999999999887643 3456
Q ss_pred eeeecccCCCcccceeeeeecCCccccccccccc
Q 004319 644 AFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKH 677 (761)
Q Consensus 644 ~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH 677 (761)
.+++|||++|||+|||||||+.||.|++||+|||
T Consensus 83 ~~~~gfH~~PS~~HLHlHvi~~~~~s~~lk~k~h 116 (116)
T PF11969_consen 83 DIRLGFHYPPSVYHLHLHVISPDFDSPCLKNKKH 116 (116)
T ss_dssp GEEEEEESS-SSSS-EEEEEETTS--TTSB----
T ss_pred hhcccccCCCCcceEEEEEccCCCcCcccccCCC
Confidence 7999999999999999999999999999999998
No 5
>PRK04143 hypothetical protein; Provisional
Probab=99.92 E-value=1e-25 Score=236.07 Aligned_cols=136 Identities=26% Similarity=0.287 Sum_probs=112.8
Q ss_pred CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCC-----ChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEE
Q 004319 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-----GGVNAAIFSAAGPALEVATAERA----KSLYPGNSVI 411 (761)
Q Consensus 341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~-----gGV~~AI~~aAG~~l~~e~~~~~----~~~~~G~avv 411 (761)
.+.+|.||+||||++. +||||||||+.|. ++ |||++||+++||++|+++|+++. ..+++|+|++
T Consensus 81 ~~~~i~i~~GDIt~l~------vDAIVNAANs~L~-g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~i 153 (264)
T PRK04143 81 KYDNIFLWQGDITRLK------VDAIVNAANSRLL-GCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKI 153 (264)
T ss_pred CCCEEEEEECCcceee------cCEEEeCcccccc-cCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 5689999999999997 9999999999998 54 89999999999999999999873 4689999999
Q ss_pred ecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc-----ccCCC
Q 004319 412 VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK-----LSKGC 481 (761)
Q Consensus 412 T~l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~-----~~~~~ 481 (761)
|+ +++|+|+||||||||.|+.+.. ..+..++|++||++||++| .||||||+| +|...
T Consensus 154 T~-------~~nLp~kyVIHtVgP~~~~g~~------~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~ 220 (264)
T PRK04143 154 TR-------AYNLPAKYVIHTVGPIIRKQPV------SPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEE 220 (264)
T ss_pred ec-------CCCCCCCEEEEECCCcccCCCC------CcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHH
Confidence 99 5899999999999999976321 1246789999999999987 589999998 66555
Q ss_pred CcccccCCCcccccccc
Q 004319 482 NEDIRLEPSVSQDHSED 498 (761)
Q Consensus 482 ~~~~~~~~~~~~~~~~~ 498 (761)
++.++ ..+..+|+..
T Consensus 221 aA~ia--~~tv~~fl~~ 235 (264)
T PRK04143 221 AAEIA--IKTVLSWLKE 235 (264)
T ss_pred HHHHH--HHHHHHHHHh
Confidence 55555 3334444443
No 6
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.91 E-value=1.1e-24 Score=211.23 Aligned_cols=114 Identities=28% Similarity=0.283 Sum_probs=99.9
Q ss_pred EEEEEEcccccccccCCccccEEEeCCCCCCcC----CCChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEEecCC
Q 004319 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKP----GGGGVNAAIFSAAGPALEVATAERA----KSLYPGNSVIVPLP 415 (761)
Q Consensus 344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~----~~gGV~~AI~~aAG~~l~~e~~~~~----~~~~~G~avvT~l~ 415 (761)
+|+|++||||++. +|||||+||+.|.. ++|||++||+++||++|++||+++. +.+++|++++|+
T Consensus 1 ~i~v~~GdIt~~~------~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~-- 72 (147)
T cd02906 1 SIYLWKGDITTLK------VDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITP-- 72 (147)
T ss_pred CeEEEECCcCCcc------CCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEe--
Confidence 4789999999997 99999999999972 3489999999999999999999873 368999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||.|+....+ .+..++|++||+++|++| .|||||+++
T Consensus 73 -----~~~L~~k~VIHavgP~~~~~~~~------~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~ 127 (147)
T cd02906 73 -----GYNLPAKYVIHTVGPIIERGLTT------PIHRDLLAKCYLSCLDLAEKAGLKSIAFCCIS 127 (147)
T ss_pred -----CCCCCCCEEEEECCCcccCCCCC------ccHHHHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 58899999999999999865321 246789999999999998 699999997
No 7
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.90 E-value=1.6e-23 Score=206.96 Aligned_cols=110 Identities=35% Similarity=0.414 Sum_probs=99.4
Q ss_pred EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 004319 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423 (761)
Q Consensus 344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~ 423 (761)
+|+|++|||+++. +|||||+||..|. ++|||++||+++||++|++||+++ +++++|++++|+ +++
T Consensus 1 ~i~i~~GdI~~~~------~daIVn~an~~l~-~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~-------~~~ 65 (165)
T cd02908 1 KIEIIQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITS-------GYN 65 (165)
T ss_pred CeEEEecccceee------cCEEEECCCCccc-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEee-------CCC
Confidence 4789999999997 9999999999999 899999999999999999999988 678999999999 488
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 424 l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
|+|++|||+|||.|+... ....++|++||+++|+.| .|||||.++
T Consensus 66 l~~~~IiH~v~P~~~~~~--------~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ig 115 (165)
T cd02908 66 LPAKYVIHTVGPVWRGGQ--------HNEAELLASCYRNSLELARENGLRSIAFPAIS 115 (165)
T ss_pred CCCCEEEEEcCCcccCCC--------CcHHHHHHHHHHHHHHHHHHcCCCEEEECcee
Confidence 999999999999997642 246789999999999987 579999775
No 8
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.89 E-value=3.2e-23 Score=206.76 Aligned_cols=114 Identities=31% Similarity=0.396 Sum_probs=103.0
Q ss_pred CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCC
Q 004319 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTS 418 (761)
Q Consensus 342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~ 418 (761)
|.+|+|++|||+++. +|||||++|..|. ++||+++||+++||++|++||+++. +++++|++++|+
T Consensus 1 ~~~i~i~~GdI~~~~------~DaIVn~an~~~~-~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~----- 68 (175)
T cd02907 1 GVTLSVIKGDITRFP------VDAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTS----- 68 (175)
T ss_pred CcEEEEEECCcceee------cCEEEECCCCCcC-CCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEec-----
Confidence 578999999999997 9999999999999 8999999999999999999998763 789999999999
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 419 ~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|++|||+|||.|+.... ....++|++||++||+.| .|||||+++
T Consensus 69 --~~~L~~k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lg 122 (175)
T cd02907 69 --AGKLPCKYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKAEELGLRSIAIPAIS 122 (175)
T ss_pred --CCCCCCCEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 4789999999999999987532 256899999999999987 589999886
No 9
>PRK00431 RNase III inhibitor; Provisional
Probab=99.88 E-value=1e-22 Score=203.45 Aligned_cols=114 Identities=34% Similarity=0.407 Sum_probs=102.5
Q ss_pred CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCC
Q 004319 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST 417 (761)
Q Consensus 341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~ 417 (761)
+|++|+|++|||+++. +|||||++|..|. ++|||++||+++||++|+++|+++. +++++|++++|+
T Consensus 1 ~~~~i~i~~Gdi~~~~------~daIVn~aN~~~~-~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~---- 69 (177)
T PRK00431 1 MGMRIEVVQGDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITS---- 69 (177)
T ss_pred CCcEEEEEeCCccccc------CCEEEECCCcccc-CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEec----
Confidence 3689999999999996 9999999999999 8999999999999999999999873 789999999999
Q ss_pred CCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 418 ~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|++|||+|||.|+.... .+.+.|++||+++|+.| .|||||.++
T Consensus 70 ---~~~l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lg 122 (177)
T PRK00431 70 ---AGRLPAKYVIHTVGPVWRGGED--------NEAELLASAYRNSLRLAAELGLRSIAFPAIS 122 (177)
T ss_pred ---CCCCCCCEEEEecCCeecCCCC--------cHHHHHHHHHHHHHHHHHHcCCceEEECccc
Confidence 4789999999999999976432 26789999999999886 689998774
No 10
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.88 E-value=1.8e-22 Score=193.63 Aligned_cols=108 Identities=27% Similarity=0.274 Sum_probs=96.4
Q ss_pred eEEEEEEcccccccccCCccccEEEeCCCCC-CcCCCChhhHHHHHhhcHHHHHHHHHhcCCCC-CCCEEEecCCCCCCC
Q 004319 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWR-LKPGGGGVNAAIFSAAGPALEVATAERAKSLY-PGNSVIVPLPSTSPL 420 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~-L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~-~G~avvT~l~~~~~~ 420 (761)
.+|+|++|||+++. +|||||+||.. +. ++|||++||+++||++|+++|+++ ..+. +|++++|+
T Consensus 1 ~~i~i~~GdI~~~~------~DaIVN~an~~~~~-~~ggv~~aI~~~~G~~l~~~~~~~-~~~~~~G~~~vT~------- 65 (137)
T cd02903 1 LTLQVAKGDIEDET------TDVIVNSVNPDLFL-LKGGVSKAILRKAGPELQKELDKA-KLGQTVGSVIVTK------- 65 (137)
T ss_pred CEEEEEeCccCCcc------CCEEEECCCCccCC-CCCCHHHHHHHhccHHHHHHHHHH-cCCCCCCeEEEec-------
Confidence 36899999999997 99999999999 66 899999999999999999999987 4455 69999999
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 421 ~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|++|||+++|+|... ....|++||++||+.| .|||||+++
T Consensus 66 ~~~L~~k~IiH~~~p~~~~~-----------~~~~l~~~~~~~L~~a~~~~~~SIAfP~ig 115 (137)
T cd02903 66 GGNLPCKYVYHVVLPNWSNG-----------ALKILKDIVSECLEKCEELSYTSISFPAIG 115 (137)
T ss_pred CCCCCCCEEEEecCCCCCCc-----------hHHHHHHHHHHHHHHHHHCCCcEEEECCCc
Confidence 47899999999999999642 4678999999999986 699999986
No 11
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.87 E-value=3.3e-22 Score=197.86 Aligned_cols=113 Identities=37% Similarity=0.469 Sum_probs=101.4
Q ss_pred CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc-----CCCCCCCEEEecCCC
Q 004319 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA-----KSLYPGNSVIVPLPS 416 (761)
Q Consensus 342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~-----~~~~~G~avvT~l~~ 416 (761)
...|.+++||||++. +|||||+||+.|. +||||+.||++++|++|+++|.+.. +.+++|++++|+
T Consensus 2 ~~~i~~v~GDIt~~~------~daIVnaAN~~l~-~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~--- 71 (179)
T COG2110 2 MTNIRVVQGDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITE--- 71 (179)
T ss_pred CceEEEEecccceee------hhheeecccccCC-CCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEcc---
Confidence 357899999999996 9999999999999 9999999999999999999999974 236779999999
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 417 ~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
.++|+.+||||+|||.|.+..+ ...+.|+.||+++|++| .|||||++|
T Consensus 72 ----~~~l~a~~ViH~vgp~~~~g~~--------~~~e~l~~a~~~~l~~a~~~g~~SiAfPais 124 (179)
T COG2110 72 ----AGRLPAKYVIHTVGPSWRGGSK--------DEAELLAAAYRAALRLAKEAGVRSVAFPAIS 124 (179)
T ss_pred ----CcCCCCCEEEecCCCcccCCCh--------hHHHHHHHHHHHHHHHHHHcCCceeeccccc
Confidence 5889999999999999987633 35689999999999996 699999997
No 12
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.84 E-value=3.7e-21 Score=177.18 Aligned_cols=116 Identities=27% Similarity=0.460 Sum_probs=103.4
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC--
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP-- 653 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p-- 653 (761)
....-|+|++|+|+|+||+|+.||||||| +||.+..+|+.++.+|++.|++.|+.+..+....+. ...++|||-+|
T Consensus 47 ell~~En~~~V~fkDikPaA~~HYLvipK-~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~-~~~r~GFHLPPf~ 124 (166)
T KOG4359|consen 47 ELLHCENEDLVCFKDIKPAATHHYLVVPK-KHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDF-TNVRMGFHLPPFC 124 (166)
T ss_pred ceeEecCCcEEEEecCCccccceEEEech-HHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCc-hheeEeccCCCcc
Confidence 44667999999999999999999999999 899999999999999999999999999877654432 45899999999
Q ss_pred cccceeeeeecCCcccccccccccccccCc-ccccCHHHHHHHHH
Q 004319 654 SMRQLHLHVISQDFNSKHLKNKKHWNSFNT-AFFCDSVDVLEEIS 697 (761)
Q Consensus 654 Sv~HLHlHVIs~d~~s~~lk~kkH~nsF~t-~fFv~~~~v~~~l~ 697 (761)
||.|||||+|.+.-+|..+. |. +|.+ .||.+.+++|++|+
T Consensus 125 SV~HLHlH~I~P~~DMgf~s-Kl---~FrPs~wFK~a~~lI~~L~ 165 (166)
T KOG4359|consen 125 SVSHLHLHVIAPVDDMGFLS-KL---VFRPSYWFKTADHLIEKLR 165 (166)
T ss_pred eeeeeeEeeecchHHhchhh-ee---EeecceEeeeHHHHHHHhh
Confidence 99999999999999988876 33 6875 79999999999986
No 13
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.83 E-value=2.5e-20 Score=177.65 Aligned_cols=107 Identities=31% Similarity=0.334 Sum_probs=96.4
Q ss_pred EEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCC
Q 004319 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE 424 (761)
Q Consensus 345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~l 424 (761)
|++++|||+++. +|||||++|..+. ++|||+++|++++|++++++|.+. +.+++|++++|+ +++|
T Consensus 2 i~i~~GdI~~~~------~DaIVn~~N~~~~-~g~Gva~ai~~~~G~~~~~~~~~~-~~~~~G~~~~t~-------~~~l 66 (133)
T cd03330 2 LEVVQGDITKVD------ADAIVNAANSRLR-MGGGVAGAIKRAGGSVIEREAVRK-APIPVGEAVITG-------AGDL 66 (133)
T ss_pred EEEEEccccccc------CCEEEeCCCCCCC-CCCcHHHHHHHHhCHHHHHHHHHc-CCCCCCeEEEEe-------CCCC
Confidence 789999999997 9999999999999 899999999999999999999886 789999999998 4789
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319 425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK 476 (761)
Q Consensus 425 ~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~ 476 (761)
+|++|||++||.+.. . ...+.|++||+++|+.|. |||||+++
T Consensus 67 ~~k~Iih~~~~~~~~-~---------~~~~~l~~~~~~~l~~a~~~~~~sIA~P~ig 113 (133)
T cd03330 67 PARYVIHAATMEEPG-R---------SSEESVRKATRAALALADELGIESVAFPAMG 113 (133)
T ss_pred CCCEEEEeCCCCCCC-C---------CHHHHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 999999999997643 1 246789999999999975 89999886
No 14
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.79 E-value=1.3e-18 Score=199.08 Aligned_cols=141 Identities=27% Similarity=0.426 Sum_probs=127.2
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF 96 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~ 96 (761)
..+|.||+|+|+|||||||||++++...+ +.+|++|.+ +.+..|+..+.++|..|++||||+||.++.+|..|
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g--~~~vn~D~l-----g~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~ 438 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTL-----GSTQNCLTACERALDQGKRCAIDNTNPDAASRAKF 438 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcC--CeEECcHHH-----HHHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 45789999999999999999999999877 889999998 35777889999999999999999999999999999
Q ss_pred HHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319 97 VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (761)
Q Consensus 97 ~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~ 165 (761)
+++ +++++.+++++|++|.++|++|+..|..... -...+++.++.+|+++|++|...|||+.|+.++-
T Consensus 439 i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~-s~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 439 LQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDS-AHIKIKDMVFNGMKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred HHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCc-ccCCCCHHHHHHHHhhCCCCCcccCceEEEEEeC
Confidence 999 9999999999999999999999999975322 1235788999999999999999999999988864
No 15
>COG4639 Predicted kinase [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=159.68 Aligned_cols=141 Identities=26% Similarity=0.343 Sum_probs=118.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC---------CC----cHHHHHHHHHHHHHCCCcEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SG----TKVQCLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~---------~~----~~~~~~~~~~~~L~~g~~VIID~ 85 (761)
++.|++|+|+|||||||||+..+.. ...++.|+++... .+ .++.+.+.++++|..|+..|||+
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~----~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA 76 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQ----NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA 76 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCC----cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3679999999999999999987665 3457777764211 11 34556688899999999999999
Q ss_pred CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (761)
Q Consensus 86 tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~ 164 (761)
||+.+++|+.++++ +.+|+..++|+|++|.++|.+|+..|.+ .+++++|.+|.+....+...|+|..++...
T Consensus 77 tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R-------qv~~~VI~r~~r~~~~~l~~e~~~~~~~~~ 149 (168)
T COG4639 77 TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER-------QVPEEVIPRMLRETIDLLEKEPFRYVWTLS 149 (168)
T ss_pred ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch-------hCCHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 99999999999999 9999999999999999999999997766 689999999999877777789999888887
Q ss_pred ChhhHH
Q 004319 165 NENDVQ 170 (761)
Q Consensus 165 ~~~ei~ 170 (761)
.++.+.
T Consensus 150 s~e~~~ 155 (168)
T COG4639 150 SPEKIC 155 (168)
T ss_pred CHHHhc
Confidence 765443
No 16
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.74 E-value=5.3e-18 Score=152.45 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=84.6
Q ss_pred CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-CceeeeecccC
Q 004319 573 RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-ASLAFRLGYHS 651 (761)
Q Consensus 573 ~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~~~~~~G~ha 651 (761)
.+|+.+|||||.+++|+|++|.|++|+||||| .||+.+..+.+.+.++|.+++-++++.+++..-.+ ++..+|.|-.+
T Consensus 27 eIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK-~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYrvv~NnG~~g 105 (127)
T KOG3275|consen 27 EIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPK-KHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYRVVQNNGKDG 105 (127)
T ss_pred cCCcceEeeccceEEEEecCCCCCceEEEeec-ccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccceeEEEcCCccc
Confidence 47899999999999999999999999999999 79999988888889999999999999998876554 67889999999
Q ss_pred CCcccceeeeeecC
Q 004319 652 APSMRQLHLHVISQ 665 (761)
Q Consensus 652 ~pSv~HLHlHVIs~ 665 (761)
.|||+|+|+|||..
T Consensus 106 ~QsV~HvH~HvlgG 119 (127)
T KOG3275|consen 106 HQSVYHVHLHVLGG 119 (127)
T ss_pred ceEEEEEEEEEeCC
Confidence 99999999999993
No 17
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.73 E-value=1.6e-17 Score=155.47 Aligned_cols=101 Identities=25% Similarity=0.338 Sum_probs=84.9
Q ss_pred CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hcc-CCceeeeeccc
Q 004319 573 RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHE-DASLAFRLGYH 650 (761)
Q Consensus 573 ~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~~-~~~~~~~~G~h 650 (761)
..|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|++++...+.+|+..+.+++++. +.. +.+..++.|-.
T Consensus 14 ~~p~~~v~edd~~~aflD~~P~~~GH~LViPK-~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~ 92 (119)
T PRK10687 14 EIPSDIVYQDELVTAFRDISPQAPTHILIIPN-ILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRH 92 (119)
T ss_pred CCCCCEEEECCCEEEEEcCCCCCCccEEEEeh-hHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCc
Confidence 46788999999999999999999999999999 8999999999999999999999998876543 223 34455677777
Q ss_pred CCCcccceeeeeecCCcccccccc
Q 004319 651 SAPSMRQLHLHVISQDFNSKHLKN 674 (761)
Q Consensus 651 a~pSv~HLHlHVIs~d~~s~~lk~ 674 (761)
++|+|+|+|+|||++--..+.|.+
T Consensus 93 agQ~V~HlHiHvI~g~~~~~~~~~ 116 (119)
T PRK10687 93 GGQEVYHIHMHLLGGRPLGPMLAH 116 (119)
T ss_pred CCcccCEEEEEECCCcccCcchhh
Confidence 889999999999998665555544
No 18
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.72 E-value=3e-17 Score=149.76 Aligned_cols=89 Identities=35% Similarity=0.631 Sum_probs=77.6
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP 653 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p 653 (761)
.+..+||+||.+++|.|.+|++++|+||||| +|+.++.+|+++++.+|.+|.+.+.+.+.+... .+...+|+|+|.+|
T Consensus 14 ~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk-~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~n~g~h~~p 91 (104)
T cd01278 14 DPEDQVYEDDRVVVFKDIYPKARHHYLVIPK-EHIASLKALTKEDVPLLEHMETVGREKLLRSDN-TDPSEFRFGFHAPP 91 (104)
T ss_pred CCccEEEeCCCEEEEECCCCCCCceEEEEec-CCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcC-CCccCeEEEeCCCC
Confidence 3567999999999999999999999999999 799999999999999999999988886554311 11234899999999
Q ss_pred --cccceeeeeec
Q 004319 654 --SMRQLHLHVIS 664 (761)
Q Consensus 654 --Sv~HLHlHVIs 664 (761)
||+|||+||||
T Consensus 92 ~~~v~H~H~Hvi~ 104 (104)
T cd01278 92 FTSVSHLHLHVIA 104 (104)
T ss_pred CcCeeeEEEEeeC
Confidence 99999999997
No 19
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.71 E-value=4.6e-17 Score=155.41 Aligned_cols=127 Identities=31% Similarity=0.410 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC------C--C-------cHHHHHHHHHHHHHCCCcEEEeCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK------S--G-------TKVQCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~------~--~-------~~~~~~~~~~~~L~~g~~VIID~t 86 (761)
||+|+|+|||||||||+.|++.++ +.+|+.|.++... . . .+..+...+..++..|.++|+|.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~ 78 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNT 78 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccC
Confidence 799999999999999999999988 8899999985211 0 0 011233677788899999999999
Q ss_pred CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 004319 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (761)
Q Consensus 87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P 151 (761)
|+...+|..|.++ +.+++.+.+|+|++|.+++.+|+.+|..+.+ ....++.+++.+|++.|++|
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD-KRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT-TS----HHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc-ccccCcHHHHHHHHHhhccC
Confidence 9999999999999 9999999999999999999999999998653 23358999999999999987
No 20
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.71 E-value=7.6e-17 Score=152.75 Aligned_cols=110 Identities=34% Similarity=0.375 Sum_probs=94.7
Q ss_pred EEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH-HHHHHHhc-CCCCCCCEEEecCCCCCCCCC
Q 004319 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL-EVATAERA-KSLYPGNSVIVPLPSTSPLCG 422 (761)
Q Consensus 345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l-~~e~~~~~-~~~~~G~avvT~l~~~~~~~~ 422 (761)
|++++|||+++. +|+|||++|..+. ++||++++|++++|+++ ++++++.. +.+++|++++|+ .+
T Consensus 2 i~~~~Gdi~~~~------~d~IV~~~n~~~~-~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~-------~~ 67 (133)
T smart00506 2 LKVVKGDITKPR------ADAIVNAANSDGA-HGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTE-------GG 67 (133)
T ss_pred eEEEeCCCCccc------CCEEEECCCcccC-CCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEec-------CC
Confidence 678999999986 9999999999999 89999999999999996 66666553 479999999999 35
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
++++++|||+++|.|.... ....+.|++||++||+.+ .||+||.++
T Consensus 68 ~~~~~~Iih~~~p~~~~~~--------~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~ig 118 (133)
T smart00506 68 NLPAKYVIHAVGPRASGHS--------NEGFELLENAYRNCLELAIELGITSVAIPLIG 118 (133)
T ss_pred CCCCCEEEEeCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 6889999999999997542 246899999999999886 489998775
No 21
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.70 E-value=1.5e-16 Score=153.52 Aligned_cols=112 Identities=33% Similarity=0.404 Sum_probs=96.6
Q ss_pred EEEEEEccccc-ccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcC--CCCCCCEEEecCCCCCCC
Q 004319 344 KFFTFVGDITR-LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK--SLYPGNSVIVPLPSTSPL 420 (761)
Q Consensus 344 ~l~v~~GDIt~-~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~--~~~~G~avvT~l~~~~~~ 420 (761)
.|.+++|||++ .. +|+|||++|..+. ++||++.+|++++|+++++++++... .+++|++++|+
T Consensus 1 ~i~~~~GDi~~~~~------~d~IVn~~n~~~~-~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~------- 66 (147)
T cd02749 1 KIKVVSGDITKPLG------SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTK------- 66 (147)
T ss_pred CEEEEECCCCCCCC------CCEEEeCCCCCCC-CCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECc-------
Confidence 36799999999 65 9999999999999 89999999999999999999998742 26899999999
Q ss_pred CCCCC-ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 421 CGREG-VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 421 ~~~l~-~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
.++++ +++|||+++|.|....+ ..+.++|++||++||+.+ .||+||.++
T Consensus 67 ~~~~~~~~~vih~~~p~~~~~~~-------~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~ig 121 (147)
T cd02749 67 GYNLDGAKYLIHIVGPKYNQGNN-------KAAFELLKNAYENCLKEAEEKGIKSIAFPLIG 121 (147)
T ss_pred CCCCCcCCEEEEeCCCCCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 36677 99999999999976532 246789999999999875 469999875
No 22
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.67 E-value=2.6e-16 Score=143.32 Aligned_cols=91 Identities=23% Similarity=0.389 Sum_probs=78.2
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhh--ccCCceeeeecccC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFL--HEDASLAFRLGYHS 651 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~--~~~~~~~~~~G~ha 651 (761)
.|..+||+||.+++|.|.+|.++||+||||| +|+.++.+|++++..+|.+|++.++++++... ..+.+..++.|..+
T Consensus 12 ~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk-~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~g~~~ 90 (104)
T cd01276 12 IPAKKVYEDDEVLAFHDINPQAPVHILVIPK-KHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGYRLVINCGKDG 90 (104)
T ss_pred CccCEEEECCCEEEEECCCCCCCCEEEEEec-ceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCC
Confidence 4577999999999999999999999999999 79999999999999999999999988877653 23444456666667
Q ss_pred CCcccceeeeeecC
Q 004319 652 APSMRQLHLHVISQ 665 (761)
Q Consensus 652 ~pSv~HLHlHVIs~ 665 (761)
+++++|||+|||++
T Consensus 91 g~~v~H~HiHii~~ 104 (104)
T cd01276 91 GQEVFHLHLHLLGG 104 (104)
T ss_pred CCceeEEEEEEeCC
Confidence 77999999999985
No 23
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.66 E-value=5.3e-16 Score=148.94 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceeeeecccC
Q 004319 573 RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASLAFRLGYHS 651 (761)
Q Consensus 573 ~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~~~~~G~ha 651 (761)
..|+.+||||+++++|+|+||.+++|+||||| +|+.++.+++++.+..|..+.....+.+++.... +.+..+|+|..+
T Consensus 12 e~~~~~Vye~~~~~afld~~P~~~gH~LviPk-~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~a 90 (138)
T COG0537 12 EIPANKVYEDEHVLAFLDIYPAAPGHTLVIPK-RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAA 90 (138)
T ss_pred CCCceEEEeCCCEEEEecCCCCCCCeEEEEec-cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCccc
Confidence 45788999999999999999999999999999 8999999999999888887777777776666554 345679999999
Q ss_pred CCcccceeeeeecC
Q 004319 652 APSMRQLHLHVISQ 665 (761)
Q Consensus 652 ~pSv~HLHlHVIs~ 665 (761)
+|+|+|||+|||.+
T Consensus 91 gq~V~HlH~HvIPr 104 (138)
T COG0537 91 GQEVFHLHIHIIPR 104 (138)
T ss_pred CcCcceEEEEEcCC
Confidence 99999999999997
No 24
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.66 E-value=4.4e-16 Score=156.13 Aligned_cols=118 Identities=21% Similarity=0.173 Sum_probs=89.9
Q ss_pred eEEEEEEcccccccc----cCCccccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh-----cCCCCCCCEEEe
Q 004319 343 KKFFTFVGDITRLYT----GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER-----AKSLYPGNSVIV 412 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~----~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG-~~l~~e~~~~-----~~~~~~G~avvT 412 (761)
..+.|+.|+|+++.. ....++||||||||+.+. +||||++||++++| ++|+++|++. .+.+++|++++|
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~-mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it 97 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGY-LDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV 97 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccC-CCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence 345566666665430 001128999999999999 99999999999999 6999999764 378999999999
Q ss_pred cCCCCCCCCCCCC----------ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-------HHhhcccc
Q 004319 413 PLPSTSPLCGREG----------VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-------LSIVRSQE 475 (761)
Q Consensus 413 ~l~~~~~~~~~l~----------~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-------~siaf~~~ 475 (761)
++ +++. +++|||++++.+.... ....+.|++||+++|..| .|||||.+
T Consensus 98 ~~-------~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~--------~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~i 162 (186)
T cd02900 98 PL-------GRALLEKTIYCRWGIPYLIHAPTMRVPSPV--------ITGTEPVFDAMWNALNAIPKENQEINTLVLPGL 162 (186)
T ss_pred cC-------CCCccccccccccCCCEEEEcCcccCCCCC--------CCcHHHHHHHHHHHHHHHHhccCCCCEEEECch
Confidence 93 4454 9999999775543111 124678999999999875 48999988
Q ss_pred c
Q 004319 476 K 476 (761)
Q Consensus 476 ~ 476 (761)
+
T Consensus 163 g 163 (186)
T cd02900 163 G 163 (186)
T ss_pred h
Confidence 6
No 25
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=2.8e-16 Score=156.50 Aligned_cols=106 Identities=26% Similarity=0.339 Sum_probs=93.4
Q ss_pred CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (761)
Q Consensus 342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (761)
+..+.+|++|++.+. +|||| |. +|||++.+|+++|||++..||..+ ..|++|.+.+|. +
T Consensus 32 ~~~i~lwr~d~~~l~------v~avv------l~-~g~~~~~ai~~aagp~l~~e~~~~-~~c~tG~ak~t~-------~ 90 (200)
T KOG2633|consen 32 NGGISLWRGDGKTLE------VDAVV------LL-GGKGVDEAIHRAAGPELPLECAYL-HGCRTGAAKSTG-------G 90 (200)
T ss_pred ccCeeEeeccccccc------ceeee------ec-cCcchhHHHHHhcCCcchHHHHhh-cCCCCCeeEecC-------C
Confidence 357899999999998 99999 66 899999999999999999999998 459999999999 5
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
++|++++|||+|||.|...+ .+.+.-|..||+|||.+| .+|||||++
T Consensus 91 ~~Lpak~vIHtvgP~~~~d~--------~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~ 142 (200)
T KOG2633|consen 91 YGLPAKRVIHTVGPRWKEDK--------LQECYFLHSCYRSCLDLAIEKLLSSIAFPKIS 142 (200)
T ss_pred CCCceeEEEEecCchhhccc--------hHHHHHHHHHHHHHHHHHHHhccceeeeeeee
Confidence 78999999999999997632 233347999999999997 479999997
No 26
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.62 E-value=1.9e-15 Score=136.43 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=76.3
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceeeeecccCC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASLAFRLGYHSA 652 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~~~~~G~ha~ 652 (761)
.|+.+|||||.+++|.|.+|.+++|+||||| +|++++.+|+++....|..+.....+.+++.+.. +.+..++.|..++
T Consensus 4 ~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk-~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~g 82 (98)
T PF01230_consen 4 IPARVVYEDDHFVAFLDIFPISPGHLLVIPK-RHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAG 82 (98)
T ss_dssp SHCEEEEE-SSEEEEEESSTSSTTEEEEEES-STGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGT
T ss_pred CCeeEEEECCCEEEEEcCCCCCCeEEEEEec-ccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhc
Confidence 4678999999999999999999999999999 7999999999988777777766666666655443 3455688899999
Q ss_pred CcccceeeeeecCC
Q 004319 653 PSMRQLHLHVISQD 666 (761)
Q Consensus 653 pSv~HLHlHVIs~d 666 (761)
++|+|+|+|||++.
T Consensus 83 q~v~HlH~HviPR~ 96 (98)
T PF01230_consen 83 QSVPHLHFHVIPRY 96 (98)
T ss_dssp SSSSS-EEEEEEES
T ss_pred CccCEEEEEEeccc
Confidence 99999999999863
No 27
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.61 E-value=4.5e-17 Score=193.19 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=112.7
Q ss_pred ccCCeEEEEEE----cccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH---HHHHHHh-----------
Q 004319 339 HINPKKFFTFV----GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAER----------- 400 (761)
Q Consensus 339 ~~~~~~l~v~~----GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l---~~e~~~~----------- 400 (761)
..+|.++.+++ ||||.+. +|+|||+||..|. +||||++||+++||+++ +++|.++
T Consensus 471 ~~~~~~~~~~~~~~~~dit~~~------~d~ivnaan~~ll-~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 543 (725)
T PRK13341 471 GQEGERLAILRDRLWSDITWQR------HDRVLNLANRSLL-WALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLE 543 (725)
T ss_pred hhcccHHHHHHHHHhccccccc------cceeEEccCccch-hhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhh
Confidence 34678889999 9999996 9999999999999 89999999999999999 8888752
Q ss_pred ------------------------cCCCCCCCEEEec---------CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 004319 401 ------------------------AKSLYPGNSVIVP---------LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG 447 (761)
Q Consensus 401 ------------------------~~~~~~G~avvT~---------l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~ 447 (761)
.|+|++|++++|. ++ .+|+|.|++|||+|||.|....+
T Consensus 544 rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~----~~g~L~~~~vIh~vGp~~~~~~~----- 614 (725)
T PRK13341 544 RPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLT----PAGKLKLLYSIPAVGPAWALLSE----- 614 (725)
T ss_pred CccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcC----CCCeeEEEEeccccChHhhhcCc-----
Confidence 4889999999991 22 16899999999999999976421
Q ss_pred CchhhHHHHHHHHHHHHHHH-----H----------Hhhccccc-----ccCCCCcccccCCCcccccccc
Q 004319 448 DYVKGCEILRKAYTSLFEGF-----L----------SIVRSQEK-----LSKGCNEDIRLEPSVSQDHSED 498 (761)
Q Consensus 448 ~~~~~~~~L~~ay~~~L~~a-----~----------siaf~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 498 (761)
.+.|.+||+++|.+| . |||||++| +|...+..++ .....+|+.+
T Consensus 615 -----~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~--~~~i~~~~~~ 678 (725)
T PRK13341 615 -----DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGID--SKLIKRWLAQ 678 (725)
T ss_pred -----cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccC--HHHHHHHHhc
Confidence 468999999999985 5 99999997 6666666665 4445555555
No 28
>PRK06762 hypothetical protein; Provisional
Probab=99.60 E-value=1.8e-14 Score=141.70 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=107.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC--------CcHHHHHHHHHHHHHCCCcEEEeCCCCCH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTKVQCLTSASSALKKGKSVFLDRCNLER 90 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~--------~~~~~~~~~~~~~L~~g~~VIID~tn~~~ 90 (761)
+|.+|+|+|+|||||||+|+.|.+.++..+.+++.|.++.... .........+...+..|..||+|+++...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~ 80 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD 80 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence 5789999999999999999999999865577889998863211 12233345555667889999999998888
Q ss_pred HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (761)
Q Consensus 91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~ 165 (761)
.+|..+..+ ...+..+..|||++|.++|.+|+.+|.... ..+++.+++++..++.+.. ++.+++.++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-----~~~~~~l~~~~~~~~~~~~---~~~~~~~~~ 148 (166)
T PRK06762 81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-----EFGEDDMRRWWNPHDTLGV---IGETIFTDN 148 (166)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-----cCCHHHHHHHHhhcCCcCC---CCeEEecCC
Confidence 888878778 777888999999999999999999997521 4679999999988876632 344444433
No 29
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.59 E-value=1.7e-15 Score=140.26 Aligned_cols=95 Identities=36% Similarity=0.456 Sum_probs=84.0
Q ss_pred EeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCC
Q 004319 367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPN 443 (761)
Q Consensus 367 VNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~ 443 (761)
||++|.+|. ++|||+++|++++|++++++|++.. +.+++|++++|+ .+++++++|||+|||.|....
T Consensus 1 Vn~~N~~~~-~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~-------~~~l~~~~Iih~v~P~~~~~~-- 70 (118)
T PF01661_consen 1 VNAANCFLS-MGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTP-------GGNLPCKYIIHAVGPTYNSPG-- 70 (118)
T ss_dssp EEEEETTSS-BSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEE-------ETTSSSSEEEEEEEEETTTST--
T ss_pred CcCCCCCCC-CCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeec-------CCCccccceEEEecceecccc--
Confidence 899999999 8999999999999999999998863 679999999999 477889999999999997543
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 444 CLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 444 ~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
.....+.|++||+++|+.| .||+||.++
T Consensus 71 -----~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig 103 (118)
T PF01661_consen 71 -----EKNSYEALESAYRNALQKAEENGIKSIAFPAIG 103 (118)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHHTTTSEEEEESTT
T ss_pred -----ccccHHHHHHHHHHHHHHHHHcCCcccccCccc
Confidence 2357899999999999986 588888775
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.59 E-value=9.4e-15 Score=157.32 Aligned_cols=177 Identities=24% Similarity=0.338 Sum_probs=126.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC---------c--H-----HHHHHHHHHHHHCCCcEE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--K-----VQCLTSASSALKKGKSVF 82 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~---------~--~-----~~~~~~~~~~L~~g~~VI 82 (761)
++.+|+|+|+|||||||+|++|++.+. .+.+++.|.++..... . . ......+..++..|..||
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vI 79 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVI 79 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 467999999999999999999999983 3788999998532110 0 0 112245567778899999
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc--------
Q 004319 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL-------- 153 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~-------- 153 (761)
||++++...+|..|..+ +..++.+.+|+|++|.+++.+|+.+|..+ .++.+++.+|+++++.+..
T Consensus 80 id~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~~p~~~~ 153 (300)
T PHA02530 80 ISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER------AVPEDVLRSMFKQMKEYRGLVWPVYTA 153 (300)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC------CCCHHHHHHHHHHHHHhcCCCCceecc
Confidence 99999999999999998 88888898999999999999999999654 5799999999988764432
Q ss_pred cCCceEEEEcCChhhHHHHHHHhhccCCCccccCCCCCCCCCcchhhHHHHHHHHhhCCC
Q 004319 154 SEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAP 213 (761)
Q Consensus 154 ~EgFd~V~vv~~~~ei~~~l~~~~~lgp~diighGc~~~~~~~~~~~~~i~~f~~~~~~~ 213 (761)
.++...+++++-++.+.+.. ...|++.. . ......-+++..++++....
T Consensus 154 ~~~~~~~~~~D~dgtl~~~~----~~~~~~~~--~-----~~~~~~~~~~~~~l~~l~~~ 202 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAKMG----GRSPYDWT--K-----VKEDKPNPMVVELVKMYKAA 202 (300)
T ss_pred CCCCCCEEEEECCCcCcCCC----CCCccchh--h-----cccCCCChhHHHHHHHHHhC
Confidence 12222455666555444321 11333321 1 23445566777777776543
No 31
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.1e-14 Score=145.14 Aligned_cols=134 Identities=22% Similarity=0.276 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc---cCCC-CC----cHHH-----HHHHHHHHHHCCCcEEEeC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI---NKGK-SG----TKVQ-----CLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i---~~~~-~~----~~~~-----~~~~~~~~L~~g~~VIID~ 85 (761)
||++.|.|||||||||+.|++.+. ....++..|.. ...+ .. ...+ ....+..+++ ...||+|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvDd 81 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVDD 81 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEec
Confidence 799999999999999999998775 23334444333 1111 11 1111 1123344444 56799999
Q ss_pred CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (761)
Q Consensus 86 tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv 163 (761)
+|+....|+.+..+ +.....+++|++.+|.++|++|+.+|.. ..|++++++++.+|++|...-.||.-.++
T Consensus 82 tNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-------pip~Evl~qly~RfEePn~~~rWDspll~ 153 (261)
T COG4088 82 TNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-------PIPEEVLRQLYDRFEEPNPDRRWDSPLLV 153 (261)
T ss_pred ccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-------CCCHHHHHHHHHhhcCCCCCccccCceEE
Confidence 99999999999999 8899999999999999999999977776 68999999999999999998888874443
No 32
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.57 E-value=1.1e-14 Score=154.83 Aligned_cols=133 Identities=23% Similarity=0.346 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc--CCCCC-------cHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN--KGKSG-------TKVQCLTSASSALKKGKSVFLDRCNLE 89 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~--~~~~~-------~~~~~~~~~~~~L~~g~~VIID~tn~~ 89 (761)
||+|+|+|||||||+|++|.+.+. ..+.+++.|.+. ...+. .+..+...+.+.|.....||+|+.|+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 799999999999999999987643 456778876664 11111 122344677888888889999999999
Q ss_pred HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceE
Q 004319 90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR 159 (761)
Q Consensus 90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~ 159 (761)
+.+|.++.++ +.++..+++|++++|.|.|++|+.+|.... .+++++|.+|..+||.|.....||.
T Consensus 83 Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-----~~~~e~i~~m~~RfE~P~~~nrWD~ 148 (270)
T PF08433_consen 83 KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-----RYPEETIDDMIQRFEEPDPKNRWDS 148 (270)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHHHHHHHHH---TTSS-GGGS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-----CCCHHHHHHHHHHhcCCCCCCCccC
Confidence 9999999999 999999999999999999999999998743 5899999999999999998666664
No 33
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.55 E-value=4.6e-14 Score=148.43 Aligned_cols=138 Identities=22% Similarity=0.296 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC---CCc-----HHHHHHHHHHHHHCCCcEEEeCCCCCH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---SGT-----KVQCLTSASSALKKGKSVFLDRCNLER 90 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~---~~~-----~~~~~~~~~~~L~~g~~VIID~tn~~~ 90 (761)
||+|+|+|||||||+|++|++.+. ..+.+++.|.++... ... +......+..++..|..||+|++|+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~ 80 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN 80 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence 689999999999999999998763 457778888774321 111 111235677788889999999999999
Q ss_pred HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCce-EEEEcCCh
Q 004319 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS-RITLCQNE 166 (761)
Q Consensus 91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd-~V~vv~~~ 166 (761)
.+|..+.++ +..+..+.+||+++|.++|.+|+.+|.. ..+++++.+++.+++.|.....|+ ..+.++..
T Consensus 81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~ 151 (249)
T TIGR03574 81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTT 151 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-------CCCHHHHHHHHHhhCCCCCCCCccCceEEecCC
Confidence 999999998 8888889999999999999999998864 356889999999999998755444 33444443
No 34
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.51 E-value=2.6e-13 Score=131.16 Aligned_cols=132 Identities=21% Similarity=0.232 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC---------CCCc---HHHHH----HHHHHHH-HCCCcEEEe
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQCL----TSASSAL-KKGKSVFLD 84 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~---------~~~~---~~~~~----~~~~~~L-~~g~~VIID 84 (761)
||+|+|+|||||||+|+.|.+.++ +.+++.|.++.. .... ..... ..+...+ ..+.++|+|
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid 78 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVA 78 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC--CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 589999999999999999999987 677888888642 1111 11111 2222233 478899999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~ 164 (761)
.++....+|..+..+. ++..+.+|+|++|.+++.+|+.+|..+ ..+.+.+..+++.|+.|...|+ .+++++
T Consensus 79 ~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~~~------~~~~~~~~~~~~~~~~p~~~~~--~~~~~~ 149 (150)
T cd02021 79 CSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARKGH------FMPADLLDSQFETLEPPGEDEE--DVIVID 149 (150)
T ss_pred eccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC--CeEEcc
Confidence 9999988888776664 567788999999999999999999764 3558889999999999998665 455543
No 35
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.49 E-value=1.1e-13 Score=121.26 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=67.4
Q ss_pred EEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceeeeecccCCCcccc
Q 004319 579 LEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASLAFRLGYHSAPSMRQ 657 (761)
Q Consensus 579 vyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~~~~~G~ha~pSv~H 657 (761)
|||||.++||.|.+|.+++|+||||| +|+.++.+|+++++..|..+.....+.+++.... ..+..++.|-.+++|++|
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk-~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H 79 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPK-RHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPH 79 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCc-hhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCE
Confidence 69999999999999999999999999 8999999999988766666555444444433333 334456777778889999
Q ss_pred eeeeeec
Q 004319 658 LHLHVIS 664 (761)
Q Consensus 658 LHlHVIs 664 (761)
+|+|||.
T Consensus 80 ~H~hiiP 86 (86)
T cd00468 80 VHLHVLP 86 (86)
T ss_pred EEEEeCC
Confidence 9999984
No 36
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.47 E-value=7e-13 Score=130.11 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=103.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCC------cH-HHHHHHHHHHHHCCCcEEEeCC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSG------TK-VQCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~------~~-~~~~~~~~~~L~~g~~VIID~t 86 (761)
|+|+|+|||||||+|+.|+..++ ..+++.|.+.. +... .+ ..+...+...+..|..+|||.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t 78 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCS 78 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 57999999999999999999988 66788888732 1110 11 1123456667777888899999
Q ss_pred CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCCh
Q 004319 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (761)
Q Consensus 87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~ 166 (761)
++...+|..+ +.++..+.+|+|++|.++|.+|+.+|..+ ..+.+.+.+++..++.|...|. ++.+++..
T Consensus 79 ~~~~~~r~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~e~--~~~~id~~ 147 (163)
T TIGR01313 79 ALKRHYRDIL---REAEPNLHFIYLSGDKDVILERMKARKGH------FMKADMLESQFAALEEPLADET--DVLRVDID 147 (163)
T ss_pred ccHHHHHHHH---HhcCCCEEEEEEeCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCCCCCCCC--ceEEEECC
Confidence 9877777655 45567788899999999999999999753 3456889999988888876663 46777766
Q ss_pred hhHHHHHH
Q 004319 167 NDVQAALD 174 (761)
Q Consensus 167 ~ei~~~l~ 174 (761)
...+++..
T Consensus 148 ~~~~~~~~ 155 (163)
T TIGR01313 148 QPLEGVEE 155 (163)
T ss_pred CCHHHHHH
Confidence 65555444
No 37
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.5e-12 Score=124.47 Aligned_cols=132 Identities=21% Similarity=0.263 Sum_probs=109.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc---------------CCCCCcHHH-HHHHHHHHHHCCCc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQ-CLTSASSALKKGKS 80 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~---------------~~~~~~~~~-~~~~~~~~L~~g~~ 80 (761)
.+-+-+|+++|++||||||+++.|.++++ +.+++.|++. +.++.+|-. +...+..++..|+.
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~--~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~ 86 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELG--LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQG 86 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhC--CcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCe
Confidence 34456999999999999999999999999 6669999882 334445644 44666777889999
Q ss_pred EEEeCCCCCHHHHHHHHHh-C------CCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc
Q 004319 81 VFLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL 153 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~------~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~ 153 (761)
||+-+..+.+.+|.-++.- + .....+++|+|..+.|++..|+.+|..| .+|.+.+.+|+..+|.|..
T Consensus 87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH------FMp~~lleSQf~~LE~p~~ 160 (191)
T KOG3354|consen 87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH------FMPADLLESQFATLEAPDA 160 (191)
T ss_pred EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc------cCCHHHHHHHHHhccCCCC
Confidence 9999999999999887763 2 1235689999999999999999999998 8999999999999999998
Q ss_pred cCC
Q 004319 154 SEG 156 (761)
Q Consensus 154 ~Eg 156 (761)
.|.
T Consensus 161 ~e~ 163 (191)
T KOG3354|consen 161 DEE 163 (191)
T ss_pred Ccc
Confidence 773
No 38
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=6.3e-13 Score=126.53 Aligned_cols=134 Identities=22% Similarity=0.228 Sum_probs=106.7
Q ss_pred EcCCCCcHHHHHHHHHHHcCCCeEEEeccccc---------------CCCCCcHHHHH-HHHHHHHHCCCcEEEeCCCCC
Q 004319 26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQCL-TSASSALKKGKSVFLDRCNLE 89 (761)
Q Consensus 26 vG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~---------------~~~~~~~~~~~-~~~~~~L~~g~~VIID~tn~~ 89 (761)
+|.+||||||++..|++.++ +.+|+.|++. +..+..|-+.+ ..+....+.++.+||-+..++
T Consensus 1 MGVsG~GKStvg~~lA~~lg--~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALK 78 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG--AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALK 78 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC--CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence 59999999999999999999 6679999972 23344555543 455555667777899999999
Q ss_pred HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCChhhH
Q 004319 90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV 169 (761)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei 169 (761)
+.+|..++. ..-.+.+|||+.+.+++.+|+..|.+| .++...+.+|+..+|+|...|. |+.++.+..+
T Consensus 79 r~YRD~LR~---~~~~~~Fv~L~g~~~~i~~Rm~~R~gH------FM~~~ll~SQfa~LE~P~~de~---vi~idi~~~~ 146 (161)
T COG3265 79 RSYRDLLRE---ANPGLRFVYLDGDFDLILERMKARKGH------FMPASLLDSQFATLEEPGADED---VLTIDIDQPP 146 (161)
T ss_pred HHHHHHHhc---cCCCeEEEEecCCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC---EEEeeCCCCH
Confidence 999888843 333488999999999999999999998 8999999999999999998883 6666655545
Q ss_pred HHHH
Q 004319 170 QAAL 173 (761)
Q Consensus 170 ~~~l 173 (761)
+++.
T Consensus 147 e~vv 150 (161)
T COG3265 147 EEVV 150 (161)
T ss_pred HHHH
Confidence 4443
No 39
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=99.44 E-value=2.9e-14 Score=142.89 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=95.3
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA 265 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (761)
+|+-+. +.+.+.++.|++.+++.... ..-..|++. .|++++++|.+++|+|.|-|... ...+.+....+.
T Consensus 48 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~-------iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~ 118 (186)
T cd02904 48 KGEVGN-ALEKKGGKEFVEAVKELRKSNGPLEIAGAA-------VSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKN 118 (186)
T ss_pred CCcHhH-HHHHHcCHHHHHHHHHHHHhcCCCCCCCEE-------EccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHH
Confidence 466565 78999999999999876422 111113332 57889999999999999998542 233345566667
Q ss_pred ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC--C---eEEEEecccc
Q 004319 266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--N---ARLVLVDLTQ 323 (761)
Q Consensus 266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--~---i~~v~vD~~~ 323 (761)
||. .++..+++||||||||||+||||+++||++++++|++|+++++ . |+|+.+|..+
T Consensus 119 ~L~-~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l~~I~fv~~~~~~ 180 (186)
T cd02904 119 CLA-AAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKQIYFVLFDSES 180 (186)
T ss_pred HHH-HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEECCHHH
Confidence 777 6777899999999999999999999999999999999999853 2 4555554443
No 40
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.42 E-value=9.5e-13 Score=119.44 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=72.7
Q ss_pred CCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCC
Q 004319 575 KDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAP 653 (761)
Q Consensus 575 p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~p 653 (761)
+..+||++|.++||.|.+|..+||+||+|| +|+.++.+|++++...|..+.+...+.+++.+...+ +..++.|...++
T Consensus 13 ~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk-~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~ 91 (103)
T cd01277 13 PSYKVYEDDHVLAFLDINPASKGHTLVIPK-KHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQ 91 (103)
T ss_pred CCCEEEeCCCEEEEECCCCCCCeeEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCc
Confidence 456999999999999999999999999999 899999999999988888887777777766654433 223333434556
Q ss_pred cccceeeeeecC
Q 004319 654 SMRQLHLHVISQ 665 (761)
Q Consensus 654 Sv~HLHlHVIs~ 665 (761)
+++|+|+|||.+
T Consensus 92 ~~~H~HiHiiPR 103 (103)
T cd01277 92 VVFHVHVHVIPR 103 (103)
T ss_pred ccCEEEEEEccC
Confidence 899999999974
No 41
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.41 E-value=1.2e-12 Score=123.59 Aligned_cols=89 Identities=19% Similarity=0.340 Sum_probs=73.4
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCCc
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAPS 654 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~pS 654 (761)
..+|||+|.+++|.|.+|..++|+||||| +|+.++.+|++++...|..+.....+.+++.....+ +..++.|-.++++
T Consensus 14 ~~iv~e~~~~~~~~~~~p~~~gh~lIiPk-~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~ 92 (126)
T cd01275 14 NLVFYRTKHSFAVVNLYPYNPGHVLVVPY-RHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGI 92 (126)
T ss_pred ccEEEeCCCEEEEEcCCCCCCCcEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCC
Confidence 56999999999999999999999999999 799999999999988888888777777776654433 2233444445569
Q ss_pred ccceeeeeecC
Q 004319 655 MRQLHLHVISQ 665 (761)
Q Consensus 655 v~HLHlHVIs~ 665 (761)
++|+|+|||++
T Consensus 93 v~H~HiHiiPR 103 (126)
T cd01275 93 VPHVHIHIVPR 103 (126)
T ss_pred cCEEEEEEeCC
Confidence 99999999997
No 42
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.37 E-value=7.5e-12 Score=124.91 Aligned_cols=149 Identities=19% Similarity=0.328 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc-cccC------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINK------------------GKSGTKVQCLTSASSALKK--GKS 80 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D-~i~~------------------~~~~~~~~~~~~~~~~L~~--g~~ 80 (761)
+|+|+|+|||||||+|++|++.++ +.+++.+ .+++ |...+.......+.+++.. ++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 78 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKK 78 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCc
Confidence 589999999999999999999998 7889874 4431 1112222233445555543 578
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cCCCc--c
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---ELPKL--S 154 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~P~~--~ 154 (761)
||||+++.+..++..|..+ ......-.+|+|++|.+++.+|+.+|.... ++.++. .+.+.+.+..+ ..|.. .
T Consensus 79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~-~r~dd~-~e~~~~r~~~y~~~~~~i~~~~ 156 (183)
T TIGR01359 79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSS-GRVDDN-IESIKKRFRTYNEQTLPVIEHY 156 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccC-CCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876 322222248999999999999999997642 223333 34444443332 22221 1
Q ss_pred CCceEEEEcCChhhHHHHHH
Q 004319 155 EGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 155 EgFd~V~vv~~~~ei~~~l~ 174 (761)
..-..++.++...+++++..
T Consensus 157 ~~~~~~~~Id~~~~~~~v~~ 176 (183)
T TIGR01359 157 ENKGKVKEINAEGSVEEVFE 176 (183)
T ss_pred HhCCCEEEEECCCCHHHHHH
Confidence 11124666776655555443
No 43
>PRK04143 hypothetical protein; Provisional
Probab=99.36 E-value=2.2e-13 Score=143.51 Aligned_cols=123 Identities=10% Similarity=0.067 Sum_probs=94.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCCC---CCCCCCcccCCCCCCCccccccccccccccccccccccc---ccccCCC
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAPS---NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG---EEVKGTE 260 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 260 (761)
|||-+. ..+.++++.|+..+++.-..+ .+. |.+. .|+++|++|.+++|+|.|-|..+. ...+.+.
T Consensus 116 ~ggId~-aI~~aAG~~L~~eC~~~~~~~g~~~~~-G~a~-------iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~ 186 (264)
T PRK04143 116 HDCIDN-AIHTFAGVQLRLDCAEIMTEQGRKEAT-GQAK-------ITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLA 186 (264)
T ss_pred CCcHHH-HHHHHhChHHHHHHHHHHHHcCCCCCC-ceEE-------EecCCCCCCCEEEEECCCcccCCCCCcchHHHHH
Confidence 688887 789999999999887753211 112 2222 688999999999999999887632 2223345
Q ss_pred CccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC-eEEEEe
Q 004319 261 NPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLV 319 (761)
Q Consensus 261 ~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~-i~~v~v 319 (761)
.-.+.|+. .....+++|||||+||||+||||+++||++++++|++|++.++. .+++++
T Consensus 187 ~cy~s~L~-~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~ 245 (264)
T PRK04143 187 SCYRSCLK-LAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFN 245 (264)
T ss_pred HHHHHHHH-HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 55666676 56678999999999999999999999999999999999998775 455553
No 44
>PRK14527 adenylate kinase; Provisional
Probab=99.36 E-value=7.7e-12 Score=126.35 Aligned_cols=153 Identities=21% Similarity=0.248 Sum_probs=104.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHHC-
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK- 77 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~~- 77 (761)
+++.+|+|+|+|||||||+|+.|++.++ +.+++.|++. + +...+.+.....+...+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM 81 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999998 6677775542 1 2222333345666666664
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc---CC
Q 004319 78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LP 151 (761)
Q Consensus 78 -g~~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e---~P 151 (761)
+..||+|+.+.+..++..+..+ +..+..+ .+++|++|.+++.+|+.+|....+ +.++ .++.+.+.+..|. .|
T Consensus 82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~dd-~~~~~~~R~~~y~~~~~~ 159 (191)
T PRK14527 82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEG-RSDD-NEETVRRRQQVYREQTQP 159 (191)
T ss_pred CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCC-CCCC-CHHHHHHHHHHHHHHhHH
Confidence 4569999988889998888777 6666655 478999999999999999975432 3444 4556655555443 22
Q ss_pred Cc--cCCceEEEEcCChhhHHHHHH
Q 004319 152 KL--SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 152 ~~--~EgFd~V~vv~~~~ei~~~l~ 174 (761)
.. ...-..+..++....++++..
T Consensus 160 v~~~y~~~~~~~~id~~~~~~~v~~ 184 (191)
T PRK14527 160 LVDYYEARGHLKRVDGLGTPDEVYA 184 (191)
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHH
Confidence 21 111124666776666665544
No 45
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.7e-11 Score=120.79 Aligned_cols=152 Identities=18% Similarity=0.358 Sum_probs=109.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c-------------------CCCCCcHHHHHHHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-------------------KGKSGTKVQCLTSASSALK 76 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~-------------------~~~~~~~~~~~~~~~~~L~ 76 (761)
..++.||++.|.|||||-|.+.+++++++ |+|++..++ | +|...+.+.+..++.++|.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~ 82 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR 82 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence 45678999999999999999999999999 999997555 2 2344455555667777775
Q ss_pred CCCc---EEEeCCCCCHHHHHHHHHh-C-CCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH--Hhhhc
Q 004319 77 KGKS---VFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM--LQKKE 149 (761)
Q Consensus 77 ~g~~---VIID~tn~~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~--~~~~e 149 (761)
+... ++||+.+...+++..|-.. . ...+ ++||||+.|+|.+|+..|+.... +.++..+.+-.|+ +.+..
T Consensus 83 ~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~f---vl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~t 158 (195)
T KOG3079|consen 83 SSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDF---VLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKST 158 (195)
T ss_pred hcCCCCeEEecCCCCChHHHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHcc
Confidence 4333 9999999999999999776 4 3444 88999999999999999998643 5555544444443 22233
Q ss_pred CCCc--cCCceEEEEcCChhhHHHHHH
Q 004319 150 LPKL--SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 150 ~P~~--~EgFd~V~vv~~~~ei~~~l~ 174 (761)
.|.. .|.-..+..++.+.+++++..
T Consensus 159 ~Pvi~~~e~kg~l~~i~a~~~~d~Vf~ 185 (195)
T KOG3079|consen 159 LPVIEYYEKKGKLLKINAERSVDDVFE 185 (195)
T ss_pred hHHHHHHHccCcEEEecCCCCHHHHHH
Confidence 4443 444446777777766666544
No 46
>PRK14531 adenylate kinase; Provisional
Probab=99.34 E-value=1.1e-11 Score=124.40 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=96.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC------------------CCCCcHHHHHHHHHHHHH--CCC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALK--KGK 79 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~------------------~~~~~~~~~~~~~~~~L~--~g~ 79 (761)
..|+|+|+|||||||+|+.|++.++ +.+|+. |.++. |...+.......+..++. .+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~ 80 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG--LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSG 80 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCC
Confidence 3589999999999999999999998 667877 44432 122222223344444454 356
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cCCCc-
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---ELPKL- 153 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~P~~- 153 (761)
.+|||+++.+..++..|..+ ...+..+ .+++|++|.+++.+|+..|... ++. ++++.+.+..| ..|..
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~-----dD~-~e~i~~Rl~~y~~~~~pv~~ 154 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA-----DDN-EAVIRNRLEVYREKTAPLID 154 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC-----CCC-HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999988776 5555444 4899999999999999999652 233 44554444433 22322
Q ss_pred -cCCceEEEEcCChhhHHHHHHH
Q 004319 154 -SEGFSRITLCQNENDVQAALDT 175 (761)
Q Consensus 154 -~EgFd~V~vv~~~~ei~~~l~~ 175 (761)
.+.-..+..++...+++++...
T Consensus 155 ~y~~~~~~~~id~~~~~~~v~~~ 177 (183)
T PRK14531 155 HYRQRGLLQSVEAQGSIEAITER 177 (183)
T ss_pred HHHhcCCEEEEECCCCHHHHHHH
Confidence 1111246667776666655543
No 47
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.31 E-value=5.4e-11 Score=118.52 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC--------------------CC-----cHHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------------SG-----TKVQCLTSASSAL 75 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~--------------------~~-----~~~~~~~~~~~~L 75 (761)
.+|+|+|+|||||||+|+.|.+.++..+.+++.|.++... .. ........+...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l 82 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA 82 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999987667788888663110 00 0111335677888
Q ss_pred HCCCcEEEeCCCC-CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 76 KKGKSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 76 ~~g~~VIID~tn~-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..|.+||+|.++. ....|..+..+ .+..+..|++.+|.++|.+|+.+|..
T Consensus 83 ~~G~~VIvD~~~~~~~~~r~~~~~~--~~~~~~~v~l~~~~~~l~~R~~~R~~ 133 (175)
T cd00227 83 RAGANVIADDVFLGRAALQDCWRSF--VGLDVLWVGVRCPGEVAEGRETARGD 133 (175)
T ss_pred hCCCcEEEeeeccCCHHHHHHHHHh--cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence 9999999999887 55666656555 33567899999999999999999975
No 48
>PRK14532 adenylate kinase; Provisional
Probab=99.30 E-value=4.5e-11 Score=120.15 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=95.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHH---CCCc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---KGKS 80 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~---~g~~ 80 (761)
|+|+|+|||||||+|+.|++.++ +.+++.|++ ++ |...+.......+.+.+. .+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 88999999999999999999998 788988544 22 222222223333444442 4578
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--CC---Cc
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LP---KL 153 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--~P---~~ 153 (761)
+|+|+++.+..++..+.++ ...+..+ .+|+|++|.+++.+|+..|.... .+.++.++....|+..-++ .| .+
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~-~r~dd~~~~~~~Rl~~~~~~~~~i~~~y 159 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ-GRPDDNPEVFVTRLDAYNAQTAPLLPYY 159 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988777 6556544 68999999999999999996422 1333444444444322221 11 11
Q ss_pred cCCceEEEEcCChhhHHHHHH
Q 004319 154 SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 154 ~EgFd~V~vv~~~~ei~~~l~ 174 (761)
.+ -..++.++...+++++..
T Consensus 160 ~~-~~~~~~id~~~~~eev~~ 179 (188)
T PRK14532 160 AG-QGKLTEVDGMGSIEAVAA 179 (188)
T ss_pred Hh-cCCEEEEECCCCHHHHHH
Confidence 22 124556666555555443
No 49
>COG0645 Predicted kinase [General function prediction only]
Probab=99.29 E-value=4.3e-11 Score=117.02 Aligned_cols=126 Identities=25% Similarity=0.242 Sum_probs=105.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------------cHHHHHHHHHHHHHCCCcE
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------------TKVQCLTSASSALKKGKSV 81 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------------~~~~~~~~~~~~L~~g~~V 81 (761)
.++++.|.||+||||+|+.|.+.++ ..+|..|.+++...+ .+..+...+...|..|.+|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg--A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~V 79 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG--AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSV 79 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC--ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 6899999999999999999999999 778999999643322 1233457788899999999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK 152 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~ 152 (761)
|+|+++.+..+|..++.+ +..++.+..|.++.|.+++..|+.+|..... +-...++..+...++...
T Consensus 80 VlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~s----DA~~~il~~q~~~~~~~~ 147 (170)
T COG0645 80 VLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDAS----DATFDILRVQLAEDEPWT 147 (170)
T ss_pred EEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcc----cchHHHHHHHHhhhCCcc
Confidence 999999999999999999 9999999999999999999999999987221 345667777777776554
No 50
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.28 E-value=8.4e-13 Score=127.14 Aligned_cols=104 Identities=7% Similarity=-0.014 Sum_probs=82.5
Q ss_pred CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccc--cccCCCCccccccccCC
Q 004319 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE--EVKGTENPEVASVNQNG 271 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 271 (761)
+.+.+.++.|++.+++.+.. ..|.+. .|++++++|.+++|+|.|-|..... ..+.+.+-.+.|+. ..
T Consensus 35 aI~~aaG~~l~~e~~~~~~~---~~G~~~-------~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~-~a 103 (140)
T cd02905 35 KIFARAGSELREEIQTLGGC---RTGEAK-------LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQ-LA 103 (140)
T ss_pred HHHHHhCHHHHHHHHHhCCC---CCCcEE-------EecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHH-HH
Confidence 67888899999999887652 224443 7889999999999999999876321 11224444555566 56
Q ss_pred CCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHH
Q 004319 272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (761)
Q Consensus 272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~ 308 (761)
...+++||||||||||+||||+++||++++++|++|+
T Consensus 104 ~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 104 KELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred HHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999995
No 51
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.27 E-value=2.3e-11 Score=116.86 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=87.7
Q ss_pred EEEEEcccccc-cccCCccccEEEeCCCCCCcCCCChhhHHHHHh--hc-HHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 004319 345 FFTFVGDITRL-YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSA--AG-PALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (761)
Q Consensus 345 l~v~~GDIt~~-~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~a--AG-~~l~~e~~~~~~~~~~G~avvT~l~~~~~~ 420 (761)
|++++|||++. . +|+|||++|..+. +|+|++.+|.++ ++ .++++.|++. .+.+|++++++.
T Consensus 2 i~~v~GDi~~~~~------~d~Iv~~~N~~~~-mG~Gia~~i~~~~p~~~~~~~~~~~~~--~~~~G~~~~~~~------ 66 (140)
T cd02901 2 ITYVKGDLLHAPE------AAALAHAVNCDGV-MGKGIALQFKEKFPEFVEEYRAACKKK--ELLLGGVAVLER------ 66 (140)
T ss_pred eEEEcCccccCCC------CCEEEEEEcCCCc-cChHHHHHHHHHCcHHHHHHHHHHHhc--CCCCCcEEEEec------
Confidence 67899999999 5 9999999999999 999999999997 34 3667777764 466788877662
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319 421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK 476 (761)
Q Consensus 421 ~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~ 476 (761)
.+++++++|||+++|.|.... .....|++|++++++.|. ||+||.++
T Consensus 67 ~~~~~~~~I~~~~t~~~~~~~---------~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG 118 (140)
T cd02901 67 GSSLVSRYIYNLPTKVHYGPK---------SRYEAIEKSLRELRAHARDNGIKSVAMPRIG 118 (140)
T ss_pred CCCCCceEEEEeeccCCCCCC---------CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCC
Confidence 245678999999999876532 236799999999999884 89999775
No 52
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.26 E-value=4.3e-11 Score=130.78 Aligned_cols=132 Identities=20% Similarity=0.247 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc-----CCCCC------------------------------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN-----KGKSG------------------------------ 62 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~-----~~~~~------------------------------ 62 (761)
|++|+|+|||||||+++.|...+ +....+++.|++. ++..+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 57899999999999999988654 3456678888764 11100
Q ss_pred ----------cHHHHH---------------------HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEE
Q 004319 63 ----------TKVQCL---------------------TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVV 110 (761)
Q Consensus 63 ----------~~~~~~---------------------~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~ 110 (761)
.|...+ ..+...+..+..+|+|++|+.+.+|..+..+ +.++..++.||
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ 160 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF 160 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 010000 1122333455579999999999999999999 99999999999
Q ss_pred EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc-cCCceEE
Q 004319 111 LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL-SEGFSRI 160 (761)
Q Consensus 111 Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~-~EgFd~V 160 (761)
+++|.++|++|+.+|.. .++++++..|..++|.|.. ...|+.-
T Consensus 161 ld~ple~~l~RN~~R~~-------~v~devie~m~~r~E~P~~~~nrWd~p 204 (340)
T TIGR03575 161 LDCPVESCLLRNKQRPV-------PLPDETIQLMGRKIEKPNPEKNAWEHN 204 (340)
T ss_pred EeCCHHHHHHHHhcCCC-------CCCHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 99999999999999964 6899999999999999997 5666653
No 53
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.22 E-value=9.9e-11 Score=117.60 Aligned_cols=104 Identities=24% Similarity=0.317 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK---GKS 80 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~~---g~~ 80 (761)
|+|+|+|||||||+|+.|++.++ +.+++.|++- + +...+.......+..++.. ++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence 79999999999999999999998 7788876652 1 1222233344556666664 578
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
||||+.+.+..++..+.+. ........+|+|++|.+++.+|+.+|...
T Consensus 80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 9999999999988888777 54445567899999999999999999754
No 54
>PLN02674 adenylate kinase
Probab=99.21 E-value=1.8e-10 Score=120.74 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=82.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK--- 77 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~--- 77 (761)
+..|+|+|+|||||||+|+.|++.++ +.+|+.+++. .|...+..-....+.+++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 45688999999999999999999999 8889875552 23334444445666666654
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhccc
Q 004319 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
++.||+|+.+.+..+...|.++ ...+..+ .+|+|++|.+++.+|+..|..
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~ 160 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWI 160 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccc
Confidence 3569999999999999988776 5445443 588899999999999999964
No 55
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.21 E-value=2.1e-10 Score=117.74 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=77.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC----CC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK----GK 79 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~----g~ 79 (761)
|+|+|+|||||||+|+.|++.++ +.+|+.+++ ++ |...+.......+..++.. ++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG--LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 78999999999999999999998 777887444 21 2233334445666666655 56
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.||||+.+.+..++..+.+. .. ....+|+|++|.+++.+|+..|..
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~ 126 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRI 126 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCc
Confidence 89999999999988888766 31 223589999999999999999963
No 56
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.20 E-value=2.4e-10 Score=117.71 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC---CC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---g~ 79 (761)
.|+++|+|||||||+|+.|++.++ +.+++.+++ ++ |...+.......+.+++.. +.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccC
Confidence 389999999999999999999999 788887544 21 2222333344555556654 34
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhccc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.||||+.+.+..+...+.+. ...+..+ .+|+|++|.+++.+|+..|..
T Consensus 80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRI 129 (215)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence 79999999998888888665 5555544 689999999999999999964
No 57
>PLN02200 adenylate kinase family protein
Probab=99.20 E-value=2.6e-10 Score=119.26 Aligned_cols=148 Identities=16% Similarity=0.329 Sum_probs=94.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHH--C
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~ 77 (761)
.|.+|+|+|+|||||||+|+.|++.++ +.||+.+++ ++ |...+.+.....+.+.+. .
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g--~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG--FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999998 778887444 32 122222333344445554 2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc---CCCc
Q 004319 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LPKL 153 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e---~P~~ 153 (761)
+..+|||+...+..++..+..+ .. ..-.+|+|++|.+++.+|+.+|... +.+ ...+.+.+.+..|. .|..
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~~~---r~d-d~~e~~~~Rl~~y~~~~~pv~ 193 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIGA--EPNVVLFFDCPEEEMVKRVLNRNQG---RVD-DNIDTIKKRLKVFNALNLPVI 193 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHcCcCC---CCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 4569999999998888888665 21 1224889999999999999999642 122 23455555444332 2211
Q ss_pred --cCCceEEEEcCChhhHHHHHH
Q 004319 154 --SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 154 --~EgFd~V~vv~~~~ei~~~l~ 174 (761)
.+.-..++.++...+++++..
T Consensus 194 ~~y~~~~~~~~IDa~~~~eeV~~ 216 (234)
T PLN02200 194 DYYSKKGKLYTINAVGTVDEIFE 216 (234)
T ss_pred HHHHhcCCEEEEECCCCHHHHHH
Confidence 111124566665555554443
No 58
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.19 E-value=3.9e-10 Score=112.88 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=96.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCC------CcHHHHHH-HHHHHHHC-CCcEEE
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKS------GTKVQCLT-SASSALKK-GKSVFL 83 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~------~~~~~~~~-~~~~~L~~-g~~VII 83 (761)
.+++|+|++||||||+++.++..++ ..+++.|.+.. +.. ..+...+. .+...+.. ...+|+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~--~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv 81 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS--AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV 81 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC--CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999999999999887 45788877521 110 11222222 22222232 344555
Q ss_pred eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv 163 (761)
++++...+|..+ ++.+..+.+|+|++|.+++.+|+.+|..+ ..+.+++.+++..+++|...|. .++.+
T Consensus 82 -~s~~~~~~R~~~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~~~~~vl~~Q~~~~e~~~~~e~--~~~~~ 149 (176)
T PRK09825 82 -CSSLKKQYRDIL---RKSSPNVHFLWLDGDYETILARMQRRAGH------FMPPDLLQSQFDALERPCADEH--DIARI 149 (176)
T ss_pred -EEecCHHHHHHH---HhhCCCEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHcCCCCCCcC--CeEEE
Confidence 778887787766 55567789999999999999999999864 4689999999999998877664 36666
Q ss_pred CChhhHH
Q 004319 164 QNENDVQ 170 (761)
Q Consensus 164 ~~~~ei~ 170 (761)
+.+...+
T Consensus 150 d~~~~~~ 156 (176)
T PRK09825 150 DVNHDIE 156 (176)
T ss_pred ECCCCHH
Confidence 6655443
No 59
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=99.19 E-value=2.7e-10 Score=111.13 Aligned_cols=139 Identities=16% Similarity=0.270 Sum_probs=101.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH--HCCCcEEEeCCCCCHHHHHHHHHh
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDRCNLEREQRTDFVKL 99 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L--~~g~~VIID~tn~~~~~R~~~~~l 99 (761)
||+-++.+||||||+|..|.+-++. |-|+..|++... ....+.+.+.+.| ..-..||+|..|.....|+.+.+.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~ 76 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFED 76 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH
Confidence 5788999999999999999999985 889999999433 4455667777888 555679999999999999988876
Q ss_pred -CCC---------CceEEEEEEeC--CH----HHHHHHHHhcccccCCCC-CC----ChHHHHHHHHhhhcCCCc----c
Q 004319 100 -GGP---------EVDVHAVVLDL--PA----KLCISRSVKRIEHEGNLQ-GG----KAAAVVNRMLQKKELPKL----S 154 (761)
Q Consensus 100 -~~~---------~~~v~vV~Ld~--p~----e~~~~R~~~R~~~~~~~~-~~----v~~~vI~r~~~~~e~P~~----~ 154 (761)
... ++.+.++.+.. +. ++|.+|+.+|+++...+. .. ....+++.+.++|++... +
T Consensus 77 ~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~~~~pD 156 (168)
T PF08303_consen 77 VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDPDREPD 156 (168)
T ss_pred HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 221 33333333332 22 678899999996544432 22 245677778888887554 6
Q ss_pred CCceEEEEcC
Q 004319 155 EGFSRITLCQ 164 (761)
Q Consensus 155 EgFd~V~vv~ 164 (761)
.+||.|+-++
T Consensus 157 ~~FD~vI~L~ 166 (168)
T PF08303_consen 157 SGFDHVIDLD 166 (168)
T ss_pred cccCEeEeCc
Confidence 7899998775
No 60
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.19 E-value=5.4e-11 Score=121.06 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=92.0
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccCCCCC---------------cHH----HHHHHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSG---------------TKV----QCLTSASSAL 75 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~~~~~---------------~~~----~~~~~~~~~L 75 (761)
....|.+++|.|.|||||||++..+...+ ...+++|+.|.++..... ... .....+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~ 90 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI 90 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999987 556889999999643211 000 1124567778
Q ss_pred HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc------CCCCCCChHHHHHHHHhh-
Q 004319 76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE------GNLQGGKAAAVVNRMLQK- 147 (761)
Q Consensus 76 ~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~------~~~~~~v~~~vI~r~~~~- 147 (761)
..+.++|+|++.........+++. ++.|+.+.++++.+|.++.+.|+.+|.... |. .++.+.+...+..
T Consensus 91 ~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR---~v~~~~~~~~~~~~ 167 (199)
T PF06414_consen 91 ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGR---FVPEEKHDRAYANL 167 (199)
T ss_dssp HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT--------HCCCHCCHHHH
T ss_pred HcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCc---CCCHHHHHHHHHHH
Confidence 899999999999888777778777 889999999999999999999999997543 21 3444433333332
Q ss_pred ---hcCCCccCCceEEEEcCChh
Q 004319 148 ---KELPKLSEGFSRITLCQNEN 167 (761)
Q Consensus 148 ---~e~P~~~EgFd~V~vv~~~~ 167 (761)
+..-....-|++|.+.+...
T Consensus 168 ~~~~~~~~~~~~~d~i~v~d~~g 190 (199)
T PF06414_consen 168 PETLEALENEKLFDRITVYDRDG 190 (199)
T ss_dssp HHHHHHHHHCT--SEEEEE-TTS
T ss_pred HHHHHHHHhcCCCCEEEEEECCC
Confidence 11111123577888776654
No 61
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.18 E-value=3.5e-10 Score=111.77 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=90.6
Q ss_pred EcCCCCcHHHHHHHHHHHcCCCeEEEecccc------cC---CCCC------cHHHHH-HHHHHHHHCCCc-EEEeCCCC
Q 004319 26 VGAPGSGKSTFCEHVMRSSARPWARICQDTI------NK---GKSG------TKVQCL-TSASSALKKGKS-VFLDRCNL 88 (761)
Q Consensus 26 vG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i------~~---~~~~------~~~~~~-~~~~~~L~~g~~-VIID~tn~ 88 (761)
+|+|||||||+++.|+..++ ..+++.|.+ +. +... .+...+ ..+...+..+.. ||+ ++++
T Consensus 1 ~G~sGsGKSTla~~la~~l~--~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~s~~ 77 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-CSAL 77 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC--CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-Eecc
Confidence 59999999999999999998 667888874 21 1111 111111 222222333344 555 8888
Q ss_pred CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCChhh
Q 004319 89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNEND 168 (761)
Q Consensus 89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~e 168 (761)
...+|..+ +..+..+.+|+|++|.+++.+|+.+|..+ ....+++.+++..+++|...|. .++.++....
T Consensus 78 ~~~~r~~~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~a~~~vl~~Q~~~~ep~~~~e~--~~~~id~~~~ 146 (163)
T PRK11545 78 KKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET--DVLVVDIDQP 146 (163)
T ss_pred hHHHHHHH---HccCCCEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHcCCCCCCCC--CEEEEeCCCC
Confidence 77777555 45677899999999999999999999864 2468899999999998877663 4566665544
Q ss_pred HH
Q 004319 169 VQ 170 (761)
Q Consensus 169 i~ 170 (761)
.+
T Consensus 147 ~~ 148 (163)
T PRK11545 147 LE 148 (163)
T ss_pred HH
Confidence 33
No 62
>PRK13808 adenylate kinase; Provisional
Probab=99.15 E-value=4.9e-10 Score=121.96 Aligned_cols=149 Identities=14% Similarity=0.211 Sum_probs=95.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---CCc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GKS 80 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---g~~ 80 (761)
|+|+|+|||||||+|+.|++.++ +.+|+.+++ + .|...+.+....++.++|.. ...
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg--l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG--IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 78899999999999999999999 677886544 2 12233334444555555543 356
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccc-----cCCCCCCChHHHHHHHHhhh---cC
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH-----EGNLQGGKAAAVVNRMLQKK---EL 150 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~-----~~~~~~~v~~~vI~r~~~~~---e~ 150 (761)
||||+.+.+..|...|..+ ...+..+ .+|+|++|.+++++|+..|... ...+.++.++ .+.+.+..| ..
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E-~i~kRL~~Y~~~t~ 159 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPE-VLAKRLASYRAQTE 159 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHH-HHHHHHHHHHHHhH
Confidence 9999999999988877665 4444433 5889999999999999998421 0112334444 444433433 22
Q ss_pred CCc--cCCceEEEEcCChhhHHHHHH
Q 004319 151 PKL--SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 151 P~~--~EgFd~V~vv~~~~ei~~~l~ 174 (761)
|.. ++.-..++.++...+++++..
T Consensus 160 PLl~~Y~e~~~lv~IDa~~siEEV~e 185 (333)
T PRK13808 160 PLVHYYSEKRKLLTVDGMMTIDEVTR 185 (333)
T ss_pred HHHHHhhccCcEEEEECCCCHHHHHH
Confidence 322 222234667776655555544
No 63
>PRK14529 adenylate kinase; Provisional
Probab=99.15 E-value=3.8e-10 Score=116.85 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC------------------CCCCcHHHHHHHHHHHHHC--CCcE
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--GKSV 81 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~------------------~~~~~~~~~~~~~~~~L~~--g~~V 81 (761)
|+|.|+|||||||+|+.|++.++ +.+++. |.+++ |...+.+.....+.++|.. .+.|
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 78899999999999999999998 556754 33332 2222333344666667654 4679
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccc
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
|||+.+.+..|...|..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c 129 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLC 129 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccc
Confidence 999999999999988765 4444333 5899999999999999999643
No 64
>PRK14530 adenylate kinase; Provisional
Probab=99.14 E-value=7.7e-10 Score=113.93 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-CCC----------------------CCcHHHHHHHHHHHHHCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGK----------------------SGTKVQCLTSASSALKKG 78 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~~~----------------------~~~~~~~~~~~~~~L~~g 78 (761)
.|+|+|+|||||||+|+.|++.++ +.+|+.+++. +.. ..+.......+...+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~ 82 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA 82 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence 488899999999999999999998 6778765542 111 111122234455666667
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 79 KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 79 ~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
..||+|+.+.+..++..+..+...+ .+|+|++|.+++.+|+..|...
T Consensus 83 ~~~IldG~pr~~~q~~~l~~~~~~d---~vI~Ld~~~~~l~~Rl~~R~~~ 129 (215)
T PRK14530 83 DGFVLDGYPRNLEQAEYLESITDLD---VVLYLDVSEEELVDRLTGRRVC 129 (215)
T ss_pred CCEEEcCCCCCHHHHHHHHHhcCCC---EEEEEeCCHHHHHHHHhCCCcC
Confidence 7899999888888877665442223 3899999999999999999653
No 65
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=99.14 E-value=6.2e-14 Score=150.51 Aligned_cols=390 Identities=25% Similarity=0.182 Sum_probs=256.8
Q ss_pred eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv 163 (761)
|.++..+. +..++........++..++..+.+.+..+...|..|.+..........++-|+..++.|...+++..+.+.
T Consensus 3 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~q~~ds~~~~~~v~~~~~~~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD 81 (422)
T KOG2134|consen 3 DRERLLRE-DSEFISYGLHEFEVHKKVTPEPAQSKDSDLVGTLVHLPQKIGGRWSSTENGMLQIFTLPKVNGGSKIIMFD 81 (422)
T ss_pred cccccccc-chhHHhcCCcccceeecccCCccccccCcccccccccccccCCCcccccCcceEEeeccccCCCcceEEEe
Confidence 55566655 56666553344556677778888999999988776555444455566777778888889889999999998
Q ss_pred CChhhHHHHHHHhhccCCCccccCCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCccccccccccccc
Q 004319 164 QNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243 (761)
Q Consensus 164 ~~~~ei~~~l~~~~~lgp~diighGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (761)
-+...+++....+...+|-|...-+|+.......+.|.||+.|+++.-+....+.-.. +
T Consensus 82 ~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~---~------------------ 140 (422)
T KOG2134|consen 82 YDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLEL---E------------------ 140 (422)
T ss_pred cCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchH---H------------------
Confidence 8888888888888888998877788999988999999999999998877664332110 0
Q ss_pred ccccccccccccccCCCCccccccccCCCCCCCC----------eeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 004319 244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (761)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~ 313 (761)
+-.+..+.|+ . .++++ ..++|.||+-.|.+-...++..|.+.+..|+-+...
T Consensus 141 ----------~f~~Ki~~i~----a----nl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaag 202 (422)
T KOG2134|consen 141 ----------EFKKKIKAIV----A----NLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAG 202 (422)
T ss_pred ----------HHHHHHHHHH----H----hcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhcc
Confidence 0000000000 0 02233 445554444434444444444444444445444322
Q ss_pred eEEE-EecccccchhhHHHHHHhhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCCh--hhHHHHHhhc
Q 004319 314 ARLV-LVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGG--VNAAIFSAAG 390 (761)
Q Consensus 314 i~~v-~vD~~~~s~~ls~v~~~~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gG--V~~AI~~aAG 390 (761)
-... ..+..+.+.......+.+-..-.....|..-.++++ +...|...+.+|++++|+.|.+.++| |..+++.++|
T Consensus 203 r~~~~~~~kkd~S~~D~~FAaN~gvkF~tPeefF~g~~~~~-~~~~~fdp~n~i~~~t~~~~~~~~~~eiV~~vgfp~sG 281 (422)
T KOG2134|consen 203 RPLDALRRKKDHSSADRKFAANAGVKFKTPEEFFLGVGVVT-WNSPGFDPKNVISRATSLCLKLDGHGEIVVAVGFPGSG 281 (422)
T ss_pred CccccccCcccccHHHHHHHHhcCCccCCHHHHhccccccc-cCCCCCCchhHHhhhcchhcccCCCCcEEEEEecCCCC
Confidence 2211 233444443333222333222233455667778888 66666666899999999999988888 9999999999
Q ss_pred HHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 004319 391 PALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSI 470 (761)
Q Consensus 391 ~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~si 470 (761)
+....+.+=.+....++++.+.+.+++|+.....+.++++|+|+ +..+|+...++|--.+..++.+|.+||++..|+
T Consensus 282 ks~f~a~~~~~~~y~~vn~d~lg~~~~C~~~~~e~l~~~~sVvi---dnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~ 358 (422)
T KOG2134|consen 282 KSTFAAKRVVPNGYKIVNADTLGTPQNCLLANAEALKHGKSVVI---DNTNPDAESRKYYLDCATEREIPIRCFEMNSSV 358 (422)
T ss_pred cchhhhhhcccCceeEeecccCCCchhhHHHHHHHhhcccEEee---CCCCcchHHHHHHhhhHHHhCccceeeeeccHH
Confidence 99887766555566777887777888888888888899999998 334455444455566788999999999988777
Q ss_pred hcccccccCCCCcccccCCCccccccccccCCccccCCcccCCCCccccccccccccCcccccccccc
Q 004319 471 VRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSR 538 (761)
Q Consensus 471 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (761)
..-+-..+ -..++|-..+ .+-++-..++++|.+|++.|-|+......
T Consensus 359 eq~~hn~~----------fR~~~~~~~~-----------~~~dm~~~~~k~kf~~ptl~egft~i~ev 405 (422)
T KOG2134|consen 359 EQAQHNNR----------FRELSDSVKD-----------SGSDMVFNSEKSKFQKPTLDEGFTNILEV 405 (422)
T ss_pred Hhhhcccc----------chhhccchhc-----------ccccceeehhhccccCchHhhhhhhhhcc
Confidence 77544322 1111221111 22345578999999999999888755444
No 66
>PRK14528 adenylate kinase; Provisional
Probab=99.14 E-value=6.9e-10 Score=111.97 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHHC---CC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK---GK 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~~---g~ 79 (761)
.|++.|+|||||||+|+.|++.++ +.+++.|++. + |...+.......+.+++.. ..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~--~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~ 80 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS--IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN 80 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccC
Confidence 478999999999999999999998 6678776662 1 1112222222344555543 34
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH--HhhhcCCCc--
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM--LQKKELPKL-- 153 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~--~~~~e~P~~-- 153 (761)
.+|||+...+..+...+.++ ...+. .-.+|+|++|.+++.+|+..|....+ +.++.++.+.+|+ |.....|..
T Consensus 81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-r~dd~~e~i~~Rl~~y~~~~~pv~~~ 159 (186)
T PRK14528 81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-RADDNEATIKNRLDNYNKKTLPLLDF 159 (186)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-CCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 69999998988888877766 43333 33588999999999999999975433 4455555544444 222233332
Q ss_pred cCCceEEEEcCChhhHHHHHH
Q 004319 154 SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 154 ~EgFd~V~vv~~~~ei~~~l~ 174 (761)
.+.-..+..++....++++..
T Consensus 160 y~~~~~~~~i~~~~~~~~v~~ 180 (186)
T PRK14528 160 YAAQKKLSQVNGVGSLEEVTS 180 (186)
T ss_pred HHhCCCEEEEECCCCHHHHHH
Confidence 111124666666656655443
No 67
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.13 E-value=2.8e-10 Score=125.14 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=93.1
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL 643 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~ 643 (761)
|.++++.-...+..+|||||.++||.|.+|..++|+||||| +|+.++.+|+++++..|..+.+...+.+.+.+..+ .
T Consensus 198 fcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPK-rH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~--~ 274 (347)
T TIGR00209 198 LVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPK-AHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS--F 274 (347)
T ss_pred HHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeec-cCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC--C
Confidence 34555443334567999999999999999999999999999 89999999999998888887777666665554332 1
Q ss_pred eeeecccCCC------cccceeeeeecCCccccc-ccccccccccCccccc---CHHHHHHHHHh
Q 004319 644 AFRLGYHSAP------SMRQLHLHVISQDFNSKH-LKNKKHWNSFNTAFFC---DSVDVLEEISN 698 (761)
Q Consensus 644 ~~~~G~ha~p------Sv~HLHlHVIs~d~~s~~-lk~kkH~nsF~t~fFv---~~~~v~~~l~~ 698 (761)
-+++|+|..| ..+|+||||+++-..+.. +|..--|-. |+.|+ +-++..+.|++
T Consensus 275 pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~--~g~~in~~~PE~aA~~LR~ 337 (347)
T TIGR00209 275 PYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEM--LGETQRDLTAEQAAERLRA 337 (347)
T ss_pred CcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhh--hcCccCCCCHHHHHHHHHh
Confidence 2678888776 557899999998554543 222222222 67776 34556666644
No 68
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.13 E-value=4e-10 Score=104.75 Aligned_cols=109 Identities=21% Similarity=0.299 Sum_probs=88.6
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-CceeeeecccCCCc
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-ASLAFRLGYHSAPS 654 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~~~~~~G~ha~pS 654 (761)
+.|+|.++..++|-.+.|.-++|+||+|+ +-...+.||+.++..-|..-.+++.+.+++..... .+..++-|-.|+|+
T Consensus 17 ~~VFykT~~sfafvNlkPvvpgHVLv~P~-R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQT 95 (150)
T KOG3379|consen 17 DHVFYKTKHSFAFVNLKPVVPGHVLVSPL-RVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQT 95 (150)
T ss_pred ceEEEeccceEEEEeccccccceEEEecc-ccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcc
Confidence 56999999999999999999999999999 68999999999987766666666667777665543 34568899999999
Q ss_pred ccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCC
Q 004319 655 MRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGK 701 (761)
Q Consensus 655 v~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~ 701 (761)
|+|+|+|||.+ ++ .=|.+=|+++.+|+.+++
T Consensus 96 VpHvHvHIlPR---------~~-------gDf~~Nd~IY~~L~~~~~ 126 (150)
T KOG3379|consen 96 VPHVHVHILPR---------KA-------GDFGDNDLIYDELDKHEK 126 (150)
T ss_pred cceeEEEEccc---------cc-------cccccchHHHHHHHhccc
Confidence 99999999985 22 445566788888876544
No 69
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.11 E-value=4.2e-10 Score=109.50 Aligned_cols=101 Identities=26% Similarity=0.324 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC---C----CcHHHH----HHHHHHHHHCCCcEEEeCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---S----GTKVQC----LTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~---~----~~~~~~----~~~~~~~L~~g~~VIID~tn 87 (761)
+|+|+|+|||||||+|+.|+..+ +..+.+++.|.++... . ..+... ...+...+..|..||+|.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 48999999999999999999887 4456778888776311 1 111111 12334456789999999999
Q ss_pred CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 88 ~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
....+|..+.++ . +..+.+|+|++|.++|.+|..+
T Consensus 81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence 999999988888 5 6788999999999999999644
No 70
>PRK02496 adk adenylate kinase; Provisional
Probab=99.11 E-value=1e-09 Score=110.04 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---g~ 79 (761)
-|+|.|+|||||||+|+.|++.++ +.+++.|++ + ++...+.......+..++.. ..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 378899999999999999999998 667876444 2 12222223333455555542 35
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC---CCc-
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL---PKL- 153 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~---P~~- 153 (761)
.||||+...+..+...+..+ ...+. ...+|+|++|.+++.+|+..|... +..++.+.+.+..|.. |..
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------dd~~~~~~~r~~~y~~~~~~v~~ 154 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK------DDTEEVIRRRLEVYREQTAPLID 154 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999998888887666554 33332 345899999999999999999653 3345666666555432 221
Q ss_pred -cCCceEEEEcCChhhHHHHHHH
Q 004319 154 -SEGFSRITLCQNENDVQAALDT 175 (761)
Q Consensus 154 -~EgFd~V~vv~~~~ei~~~l~~ 175 (761)
.+.-..++.++...+++++...
T Consensus 155 ~~~~~~~~~~Ida~~~~~~V~~~ 177 (184)
T PRK02496 155 YYRDRQKLLTIDGNQSVEAVTTE 177 (184)
T ss_pred HHHhcCCEEEEECCCCHHHHHHH
Confidence 1111245667776666665543
No 71
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.10 E-value=5.5e-10 Score=122.80 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=92.1
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL 643 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~ 643 (761)
|.+++..-......+|||||.+++|.|.+|..++|+||||| +|+.++.+|+++++..|..+.+...+.+.+.+..++
T Consensus 198 fcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPK-rH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~-- 274 (346)
T PRK11720 198 LVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPK-AHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSF-- 274 (346)
T ss_pred HHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecc-cCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 34455432223357999999999999999999999999999 899999999999988888777766666666553321
Q ss_pred eeeecccCCC------cccceeeeeecCCcccccccccccccccC-ccccc---CHHHHHHHHHh
Q 004319 644 AFRLGYHSAP------SMRQLHLHVISQDFNSKHLKNKKHWNSFN-TAFFC---DSVDVLEEISN 698 (761)
Q Consensus 644 ~~~~G~ha~p------Sv~HLHlHVIs~d~~s~~lk~kkH~nsF~-t~fFv---~~~~v~~~l~~ 698 (761)
.+++|+|..| .++|+|+||+++-..+.. |. |-...|- ++.|+ +-++..+.|++
T Consensus 275 pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~-~~-k~~aGfE~~g~~in~~~PE~aA~~LR~ 337 (346)
T PRK11720 275 PYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSAT-VR-KFMVGYEMLAETQRDLTAEQAAERLRA 337 (346)
T ss_pred CCceeEEecccCCCCCeeEEEEEEEeCCccCccc-cc-cceeeeecccCccCCCCHHHHHHHHhh
Confidence 2688888776 589999999987544433 12 2112221 46665 45666666654
No 72
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.09 E-value=1.4e-11 Score=119.75 Aligned_cols=109 Identities=9% Similarity=0.008 Sum_probs=81.7
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhCCCC--CCCCCCcccCCCCCCCccccccccccccccccccccccc---ccccCCCCc
Q 004319 188 GSFGQKNPDAKIQLGIMKFLKKVDAPS--NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG---EEVKGTENP 262 (761)
Q Consensus 188 Gc~~~~~~~~~~~~~i~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 262 (761)
|+.+. .++.+.++.|++.+++.-+.. ....|++. .|+++|++|.+++|+|.|-|..+. +..+.+...
T Consensus 34 ggv~~-aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~-------~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~ 105 (147)
T cd02906 34 RCIDN-IIHTFAGPQLRQACFELMTKQGREEPTGQAK-------ITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKC 105 (147)
T ss_pred CcHHH-HHHHHhCHHHHHHHHHHHHhcCCCCCCCeEE-------EEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHH
Confidence 44444 677788899999887763211 11123332 688999999999999999887532 233345666
Q ss_pred cccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHH
Q 004319 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (761)
Q Consensus 263 ~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~ 305 (761)
++.|+. .....+++|||||+||||+||||+++||++++++|+
T Consensus 106 ~~~~L~-~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 106 YLSCLD-LAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred HHHHHH-HHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 677776 566789999999999999999999999999999984
No 73
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.09 E-value=2.3e-09 Score=107.03 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=89.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHH----HHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTS----ASSALK 76 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~----~~~~L~ 76 (761)
..+|+|+|+|||||||+|+.|++.++ +.+++.+++ +. +...+....... +...+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG 80 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence 35899999999999999999999998 667877443 21 111122222222 233345
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--CCCc-
Q 004319 77 KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKL- 153 (761)
Q Consensus 77 ~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--~P~~- 153 (761)
.+..||+|+.+....+...+... ......+|+|++|.+++.+|+.+|.... .+.+..++....++...++ .|..
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~~~~~~~Rl~~R~~~~-~r~d~~~~~~~~r~~~~~~~~~~~~~ 157 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSEDTMVKRLLKRAETS-GRVDDNEKTIKKRLETYYKATEPVIA 157 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcccccC-CCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 67889999988776666555332 2223458999999999999999997522 2333334433344432221 1211
Q ss_pred -cCCceEEEEcCChhhHHHHH
Q 004319 154 -SEGFSRITLCQNENDVQAAL 173 (761)
Q Consensus 154 -~EgFd~V~vv~~~~ei~~~l 173 (761)
.+....++.++....++++.
T Consensus 158 ~y~~~~~~~~id~~~~~~~v~ 178 (188)
T TIGR01360 158 YYETKGKLRKINAEGTVDDVF 178 (188)
T ss_pred HHHhCCCEEEEECCCCHHHHH
Confidence 11112455666655555443
No 74
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.08 E-value=5.8e-11 Score=117.57 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=90.8
Q ss_pred CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCccccccccccccccccccccccc-ccccCCCCccccccccCCC
Q 004319 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGS 272 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (761)
+.....++.+++.+++.... ..|.+. .|+++++.|.+++|+|.|-|..+. ++...+.+.++.|+. ...
T Consensus 34 ai~~~~G~~l~~e~~~~~~~---~~G~~v-------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~-~a~ 102 (165)
T cd02908 34 AIHRAAGPELLEECRELRGC---PTGEAV-------ITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLE-LAR 102 (165)
T ss_pred HHHHHhCHHHHHHHHHhCCC---CCCCEE-------EeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHH-HHH
Confidence 67778889999999987654 223332 678899999999999999887531 333445666777776 556
Q ss_pred CCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEeccc
Q 004319 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLT 322 (761)
Q Consensus 273 ~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~ 322 (761)
..+++|||||+||||+||||.++||+++++++++|++.... ++|+..|.+
T Consensus 103 ~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v~~~~~ 155 (165)
T cd02908 103 ENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFVCFSEE 155 (165)
T ss_pred HcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence 68999999999999999999999999999999999987433 444444433
No 75
>PRK06217 hypothetical protein; Validated
Probab=99.08 E-value=2.5e-09 Score=107.35 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC-------CCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------KSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRT 94 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~-------~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~ 94 (761)
.|+|+|.|||||||+|++|++.++ +.+++.|.+... ...+.+.....+...+..+..+|||+.... .+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~--~~~ 78 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD--IPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG--WGD 78 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH--HHH
Confidence 499999999999999999999998 567888877421 122334445566666767788999984432 222
Q ss_pred HHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 95 DFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 95 ~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
... ...+. +|+|++|.++|.+|+..|..
T Consensus 79 ~~~--~~~d~---~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 79 PLE--PLFDL---VVFLTIPPELRLERLRLREF 106 (183)
T ss_pred HHH--hhCCE---EEEEECCHHHHHHHHHcCcc
Confidence 111 33444 78999999999999999974
No 76
>PLN02459 probable adenylate kinase
Probab=99.07 E-value=2.1e-09 Score=113.41 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=79.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK--- 77 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~--- 77 (761)
+..|+|+|+|||||||+|+.|++.++ +.+|+..++ + +|...+.......+.++|..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~ 106 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE 106 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence 34578899999999999999999998 778886444 2 34444555555667777754
Q ss_pred --CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 78 --GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 78 --g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.+.||||+.+.+..|...|-.+.. .-.+|+|++|.+++.+|+..|...
T Consensus 107 ~~~~g~iLDGFPRt~~Qa~~Le~~~~---id~Vi~L~v~d~~l~~Rl~gR~~~ 156 (261)
T PLN02459 107 EGESGFILDGFPRTVRQAEILEGVTD---IDLVVNLKLREEVLVEKCLGRRIC 156 (261)
T ss_pred cCCceEEEeCCCCCHHHHHHHHhcCC---CCEEEEEECCHHHHHHHhhccccc
Confidence 356999999999999887755421 134899999999999999999643
No 77
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.06 E-value=1.5e-09 Score=106.21 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=75.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCC----cH---HH----HHHHHHHHHHCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK---VQ----CLTSASSALKKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~----~~---~~----~~~~~~~~L~~g~~VIID 84 (761)
++.+|+|+|+|||||||+|++|.+.+ +....+++.|.++.+... +. .+ ....+.....+|..||++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 46899999999999999999998775 467888999999865432 11 11 224555566789999999
Q ss_pred CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
.....++.|...+++ ... .+..||+++|.++|.+|-
T Consensus 81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHT
T ss_pred eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhC
Confidence 999999999999888 433 678899999999999995
No 78
>PRK14526 adenylate kinase; Provisional
Probab=99.04 E-value=3.5e-09 Score=109.00 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=73.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GKS 80 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---g~~ 80 (761)
|+|+|+|||||||+++.|++.++ +.+++.+++ ++ |...+.......+.++|.. .+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 77899999999999999999988 667875554 21 2222222233555566643 467
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
||||+.+.+..+...+... .. ..+++|++|.+++.+|+..|...
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~ 125 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRIC 125 (211)
T ss_pred EEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCcc
Confidence 9999999999998877665 22 24678899999999999999754
No 79
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.03 E-value=8.7e-11 Score=117.40 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=90.6
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCccccccccccccccccccccccc--ccccCCCCccc
Q 004319 188 GSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTENPEV 264 (761)
Q Consensus 188 Gc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 264 (761)
|..+. ......++.+++.++..-.. .....|.+. .|.+.++.|.+++|.|.|-|..+. +....+...++
T Consensus 31 ggv~~-ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~-------~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~ 102 (175)
T cd02907 31 GGLAL-AIVKAGGPEIQEESDEYVRKNGPVPTGEVV-------VTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAIL 102 (175)
T ss_pred CCHHH-HHHHHHhHHHHHHHHHHHHhcCCCCCCcEE-------EecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHH
Confidence 44443 66777888888888764211 111223333 677889999999999999887643 22233555666
Q ss_pred cccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC----eEEEEecccc
Q 004319 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN----ARLVLVDLTQ 323 (761)
Q Consensus 265 ~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~----i~~v~vD~~~ 323 (761)
.|+. .....+++|||||+||||++|||++++|+++++++++|+.+++. |+|+..|.+.
T Consensus 103 ~~L~-~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~~~~~ 164 (175)
T cd02907 103 NSLR-KAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDYDEQT 164 (175)
T ss_pred HHHH-HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEECCHHH
Confidence 6666 45567999999999999999999999999999999999998632 4555544433
No 80
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.03 E-value=5e-09 Score=109.16 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=76.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHHC----
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK---- 77 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~~---- 77 (761)
.-|+|+|+|||||||+|+.|++.++ +.+|+.|++.. |...+.+.....+...+..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 4499999999999999999999999 77898877631 2222333344555555543
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 -g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
...||+|+.+.+..++..+.... -...+++|++|.+++.+|+..|..
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~---~~~~vi~l~~~~~~~~~Rl~~Rr~ 132 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKIT---NIDLFVNIYLPRNILIKKLLGRRI 132 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHcCcC
Confidence 46799999999999988775442 223488999999999999999964
No 81
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.02 E-value=8e-11 Score=113.07 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCC
Q 004319 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (761)
....+.++.+++.+++...... .|++. -|++.+++|.+++|.+.+-|.++ ....+.+.++.|+. ....
T Consensus 36 aI~~~~G~~l~~~~~~~~~~~~--~G~~~-------vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~-~a~~ 103 (137)
T cd02903 36 AILRKAGPELQKELDKAKLGQT--VGSVI-------VTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECLE-KCEE 103 (137)
T ss_pred HHHHhccHHHHHHHHHHcCCCC--CCeEE-------EecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHHH-HHHH
Confidence 4567777889999987655432 24443 67788999999999999988863 23346666778877 6667
Q ss_pred CCCCeeecccccccCCCCCHHHHHHHHHHHHHHH
Q 004319 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF 307 (761)
Q Consensus 274 ~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f 307 (761)
.+++|||||+||||+||||+++||++++++|.+|
T Consensus 104 ~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 104 LSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999987
No 82
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.01 E-value=6.2e-09 Score=104.39 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-------------------CCcHHHHHHHHHHHHHCC---C
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------------------SGTKVQCLTSASSALKKG---K 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-------------------~~~~~~~~~~~~~~L~~g---~ 79 (761)
-|+++|+|||||||+|++|++.++ +.|++.+++.... ..+..-....+..++... .
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 389999999999999999999987 8899976663211 111222223444444432 2
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cCCCcc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---ELPKLS 154 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~P~~~ 154 (761)
.+|+|+.+.+..+-..+.++ ...+.. -.++.++.+.+.+..|...|.. +.++.++.+-.| +..+ ..|. .
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R-~~~y~~~~~pl-i 153 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKR-LKVYHEQTAPL-I 153 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHH-HHHHHhcccch-h
Confidence 69999999998887777766 555543 3678899999999999999974 123444444444 4433 3333 2
Q ss_pred CCceEEEEcCChhhHHHHHHHh
Q 004319 155 EGFSRITLCQNENDVQAALDTY 176 (761)
Q Consensus 155 EgFd~V~vv~~~~ei~~~l~~~ 176 (761)
+-+. ..++...+++++...+
T Consensus 154 ~~y~--~~id~~~~i~~v~~~i 173 (178)
T COG0563 154 EYYS--VTIDGSGEIEEVLADI 173 (178)
T ss_pred hhhe--eeccCCCCHHHHHHHH
Confidence 2222 5667777777766554
No 83
>PRK08118 topology modulation protein; Reviewed
Probab=99.00 E-value=1.5e-09 Score=107.74 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCCCC-cHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~~~-~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~ 98 (761)
-|+|+|+|||||||+|++|++.++ +.+++.|.+. .++.. +.+.....+.+ +..+..+|+|+. +.......+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD~l~~~~~w~~~~~~~~~~~~~~-~~~~~~wVidG~-~~~~~~~~l-- 76 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN--IPVHHLDALFWKPNWEGVPKEEQITVQNE-LVKEDEWIIDGN-YGGTMDIRL-- 76 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCceecchhhcccCCcCCCHHHHHHHHHH-HhcCCCEEEeCC-cchHHHHHH--
Confidence 389999999999999999999999 4456777663 33332 33333333334 444578999994 332211111
Q ss_pred hCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 99 LGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 99 l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
...+. +|+|++|.++|..|+.+|.-
T Consensus 77 -~~~d~---vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 77 -NAADT---IIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred -HhCCE---EEEEeCCHHHHHHHHHHHHH
Confidence 22333 89999999999999999954
No 84
>PRK07261 topology modulation protein; Provisional
Probab=99.00 E-value=1.7e-09 Score=107.66 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCCC-CcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKS-GTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~~-~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~ 98 (761)
-|+|+|+|||||||||+.|++.++ ..+++.|.+. .++. .+.++....+...+..+. +|+|+++........+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l-- 76 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN--CPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM-- 76 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC--CCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--
Confidence 389999999999999999999988 4457777664 2222 234455666777777665 9999975542322222
Q ss_pred hCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 99 LGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 99 l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
...+. +|+|++|.++|..|+.+|.-.
T Consensus 77 -~~ad~---vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 77 -QEADQ---IIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred -HHCCE---EEEEcCCHHHHHHHHHHHHHH
Confidence 22333 899999999999999999754
No 85
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.98 E-value=3.1e-09 Score=107.51 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEeccc-cc---CCCCCc-------HHHHHHHHHHHHHCCCcEEEeCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDT-IN---KGKSGT-------KVQCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~-i~---~~~~~~-------~~~~~~~~~~~L~~g~~VIID~t 86 (761)
||+++|.|.|||||.|+.|.+.+. ...+.|..|. +. +..+++ +-.+...+.+.|..+..||+|.-
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Dsl 82 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDSL 82 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEecc
Confidence 789999999999999999887654 2233333332 21 111221 12244678889999999999999
Q ss_pred CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEE
Q 004319 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (761)
Q Consensus 87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V 160 (761)
|+-+..|..+..+ +..+...++|+..+|.|+|++.+.+|.... . +..+.++++....+||+|.....||.-
T Consensus 83 NyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~--e-~gy~~e~le~L~~RyEeP~s~NRWDsP 154 (281)
T KOG3062|consen 83 NYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPG--E-DGYDDELLEALVQRYEEPNSRNRWDSP 154 (281)
T ss_pred cccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCC--C-CCCCHHHHHHHHHHhhCCCccccccCc
Confidence 9999999999999 888888999999999999999998887632 1 357899999999999999998888863
No 86
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.97 E-value=7.9e-10 Score=119.32 Aligned_cols=142 Identities=27% Similarity=0.406 Sum_probs=121.6
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF 96 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~ 96 (761)
.+.+.+|+++|.||||||||+.......+ +.++++|.+ +++..|.....++|..++.||+|.||.....|..|
T Consensus 266 ~~~~eiV~~vgfp~sGks~f~a~~~~~~~--y~~vn~d~l-----g~~~~C~~~~~e~l~~~~sVvidnt~pd~~sr~~~ 338 (422)
T KOG2134|consen 266 DGHGEIVVAVGFPGSGKSTFAAKRVVPNG--YKIVNADTL-----GTPQNCLLANAEALKHGKSVVIDNTNPDAESRKYY 338 (422)
T ss_pred CCCCcEEEEEecCCCCcchhhhhhcccCc--eeEeecccC-----CCchhhHHHHHHHhhcccEEeeCCCCcchHHHHHH
Confidence 34458999999999999999999887776 888999998 88899999999999999999999999999999999
Q ss_pred HHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCCh
Q 004319 97 VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (761)
Q Consensus 97 ~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~ 166 (761)
++. ....+.+.++.+.++.+.....+..|.-+.. .....++-+++.+.++|+.|.+.|||..+..+.-.
T Consensus 339 ~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~-~~~~~~dm~~~~~k~kf~~ptl~egft~i~ev~f~ 408 (422)
T KOG2134|consen 339 LDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDS-VKDSGSDMVFNSEKSKFQKPTLDEGFTNILEVPFK 408 (422)
T ss_pred hhhHHHhCccceeeeeccHHHhhhccccchhhccc-hhcccccceeehhhccccCchHhhhhhhhhccchh
Confidence 999 9999999999999999988888877764321 12245566777788889999999999988777654
No 87
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.97 E-value=4.2e-09 Score=104.15 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------------CCCCcHHHHHHHHHHHHHCCCcEEEeC--
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------GKSGTKVQCLTSASSALKKGKSVFLDR-- 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------------~~~~~~~~~~~~~~~~L~~g~~VIID~-- 85 (761)
-|+|+|++||||||+++.|++.++ +.+++.|.+-+ |+..-+....+.+.+.+..+..||--+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~--~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN--LPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC--CCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 489999999999999999999999 45588887732 222222222244445555553444443
Q ss_pred CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (761)
Q Consensus 86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~ 164 (761)
...+...|..+ +..+. +|||++|.+++.+|+.....+ +.+....+.+.+...+.+.. |.+.|--+.++..+
T Consensus 82 ~v~~~enr~~l---~~~g~---vv~L~~~~e~l~~Rl~~~~~R-Pll~~~~~~~~l~~L~~~R~-~~Y~e~a~~~~~~~ 152 (172)
T COG0703 82 AVLSEENRNLL---KKRGI---VVYLDAPFETLYERLQRDRKR-PLLQTEDPREELEELLEERQ-PLYREVADFIIDTD 152 (172)
T ss_pred cccCHHHHHHH---HhCCe---EEEEeCCHHHHHHHhccccCC-CcccCCChHHHHHHHHHHHH-HHHHHhCcEEecCC
Confidence 55666777766 44454 999999999999999844433 33455566565666555443 33344333343333
No 88
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.96 E-value=7.1e-09 Score=103.98 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=80.3
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC-----CCc--HHH----HHHHHHHHHHCCCcE
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGT--KVQ----CLTSASSALKKGKSV 81 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~-----~~~--~~~----~~~~~~~~L~~g~~V 81 (761)
...++.+|+|+|+|||||||+|+.|...+. ....+++.|.++... +.. +.. ....+...+..|..|
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 93 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV 93 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 446778999999999999999999998763 345678888886421 111 111 123445567889999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|+|+++....+|..+..+ ... .+.+|++++|.++|.+|.
T Consensus 94 I~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 94 ITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred EEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhC
Confidence 999999999999988888 543 577899999999999994
No 89
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.94 E-value=2.7e-09 Score=117.02 Aligned_cols=99 Identities=13% Similarity=0.280 Sum_probs=77.0
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL 643 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~ 643 (761)
+.+++..-......+||+||.+++|.|.+|..++|+||||| +|+.++.+|++++...|.+++..+...+.+.+... .
T Consensus 188 fcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPK-rH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~--~ 264 (329)
T cd00608 188 LCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPK-RHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS--F 264 (329)
T ss_pred HHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecC-CCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC--C
Confidence 33444432223467999999999999999999999999999 89999999999998888877777665555554311 2
Q ss_pred eeeecccCCC--------cccceeeeeecC
Q 004319 644 AFRLGYHSAP--------SMRQLHLHVISQ 665 (761)
Q Consensus 644 ~~~~G~ha~p--------Sv~HLHlHVIs~ 665 (761)
.+++|+|..| .++|+|+|++.+
T Consensus 265 pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr 294 (329)
T cd00608 265 PYSMGWHQAPTGGKELENWYYHWHFEIPPR 294 (329)
T ss_pred CeEEEEeccCCCCCcCCcceEEEEEEeCCC
Confidence 3788887655 678999999986
No 90
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.94 E-value=6.8e-09 Score=100.79 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=71.9
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-------------------cCCCCCcHHHHHHHHHHHHHC---CCcEE
Q 004319 25 MVGAPGSGKSTFCEHVMRSSARPWARICQDTI-------------------NKGKSGTKVQCLTSASSALKK---GKSVF 82 (761)
Q Consensus 25 LvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-------------------~~~~~~~~~~~~~~~~~~L~~---g~~VI 82 (761)
|+|+|||||||+|++|++.++ +.+|+.+++ .+|...+.+.....+..++.. .+.||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence 689999999999999999998 888986443 234444444555666666654 47799
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHh
Q 004319 83 LDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~ 124 (761)
||+.+.+..+...|.++ ...+.. -.+|+|++|.+.+.+|+.+
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 99999999998888774 323333 3789999999999999887
No 91
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=7.8e-09 Score=102.80 Aligned_cols=141 Identities=16% Similarity=0.233 Sum_probs=94.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe-------------------EEEecccc----cCCCCCcHHH--------H
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW-------------------ARICQDTI----NKGKSGTKVQ--------C 67 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~-------------------~~I~~D~i----~~~~~~~~~~--------~ 67 (761)
+..|++|+||+|+||||+.++|.+..+..+ .+++.+.+ ..+.+..|.+ -
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~ 82 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS 82 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence 457999999999999999999998864211 11222221 1122222211 1
Q ss_pred HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319 68 LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (761)
Q Consensus 68 ~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~ 145 (761)
...+.+.+..|+.||+|- +.+..+.+ .... .+..||+.+| .+.+.+|+..|.. +..+.+-.||.
T Consensus 83 ~~~ve~~~~~G~~vildI------d~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgt-------ds~e~I~~Rl~ 148 (191)
T COG0194 83 REPVEQALAEGKDVILDI------DVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGT-------DSEEVIARRLE 148 (191)
T ss_pred HHHHHHHHhcCCeEEEEE------ehHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCC-------CCHHHHHHHHH
Confidence 256778899999999998 55666666 4444 5667777655 6899999999987 45566667776
Q ss_pred hhhcCCCccCCceEEEEcCChhhHHHHH
Q 004319 146 QKKELPKLSEGFSRITLCQNENDVQAAL 173 (761)
Q Consensus 146 ~~~e~P~~~EgFd~V~vv~~~~ei~~~l 173 (761)
+...+-.....||.|++.++.+.+...+
T Consensus 149 ~a~~Ei~~~~~fdyvivNdd~e~a~~~l 176 (191)
T COG0194 149 NAKKEISHADEFDYVIVNDDLEKALEEL 176 (191)
T ss_pred HHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 6655555555599998887765554433
No 92
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.2e-08 Score=100.43 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=80.0
Q ss_pred cccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCC----cH---HH----HHHHHHHHHHCCCc
Q 004319 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK---VQ----CLTSASSALKKGKS 80 (761)
Q Consensus 15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~----~~---~~----~~~~~~~~L~~g~~ 80 (761)
....++.+|+++|++||||||+|.+|.+++ |.....++.|.++.+... +. .+ ....+......|-.
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~i 97 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLI 97 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeE
Confidence 455678999999999999999999998765 456677899999865431 22 11 22344455567777
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
+|+......+..|+..+++ .+. .+.-||+++|.++|.+|-
T Consensus 98 viva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 98 VIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRD 138 (197)
T ss_pred EEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcC
Confidence 8888888888999988888 432 577899999999998885
No 93
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.90 E-value=9.8e-09 Score=103.70 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=83.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCe--------------------EEEecccc----cCCCCCcHHH-------
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW--------------------ARICQDTI----NKGKSGTKVQ------- 66 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~--------------------~~I~~D~i----~~~~~~~~~~------- 66 (761)
.++.+|+|+|||||||||++++|.+.+...+ ..++.+.+ ..+.+..+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 4678999999999999999999988764211 11111111 0111111100
Q ss_pred -HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHH
Q 004319 67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (761)
Q Consensus 67 -~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r 143 (761)
-...+.+.+..|+.+|+|. +++.+..+ ..+...+.+||+.+| .+++.+|+.+|... ..+++-.+
T Consensus 82 t~~~~i~~~~~~g~~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~-------s~e~i~~R 148 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD-------SEESIEKR 148 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC-------CHHHHHHH
Confidence 1144677889999999998 45555555 434433457788775 69999999998752 33444444
Q ss_pred HHhhhcCCCccCCceEEEEcCChhh
Q 004319 144 MLQKKELPKLSEGFSRITLCQNEND 168 (761)
Q Consensus 144 ~~~~~e~P~~~EgFd~V~vv~~~~e 168 (761)
+.++..+-.....||.|++.++.++
T Consensus 149 l~~~~~e~~~~~~~D~vI~N~dle~ 173 (186)
T PRK14737 149 IENGIIELDEANEFDYKIINDDLED 173 (186)
T ss_pred HHHHHHHHhhhccCCEEEECcCHHH
Confidence 4444322222455788777664333
No 94
>PRK00431 RNase III inhibitor; Provisional
Probab=98.90 E-value=9.7e-10 Score=110.03 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=87.5
Q ss_pred CCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccc-cccCCCCccccccccCC
Q 004319 194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVASVNQNG 271 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 271 (761)
+.....++.+++.+++.-.. .....|.+. .|++.++.|.+++|+|.|-|..... ....+...++.|+. ..
T Consensus 37 aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~-------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~-~a 108 (177)
T PRK00431 37 AIHRAAGPEILEECRELRQQQGPCPTGEAV-------ITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLR-LA 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEE-------EecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHH-HH
Confidence 56667778888888876222 122224443 5778899999999999998875321 12334555566665 45
Q ss_pred CCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEecccc
Q 004319 272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLTQ 323 (761)
Q Consensus 272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~~ 323 (761)
...+++|||||+||||+||||.++||+++++++.+|++.... ++|+..|.++
T Consensus 109 ~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~~v~~~~~~ 163 (177)
T PRK00431 109 AELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVYFVCYDEEA 163 (177)
T ss_pred HHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEEEEECCHHH
Confidence 567999999999999999999999999999999999876654 4444444333
No 95
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.86 E-value=4.1e-08 Score=98.82 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=64.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC------CCC-CcHHHH----------------------HHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKS-GTKVQC----------------------LTSA 71 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~------~~~-~~~~~~----------------------~~~~ 71 (761)
.+++|+|++||||||+++.|+...+..+.+......+. ... ....+. ...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 47999999999999999999887653332211111110 000 000000 0235
Q ss_pred HHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 72 SSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+.++.|..||+|+. +..+..+ +..+....+|+|++|.+++.+|+..|.+
T Consensus 83 ~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~ 133 (186)
T PRK10078 83 DLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR 133 (186)
T ss_pred HHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence 567788999999874 3333333 3345567789999999999999998854
No 96
>PRK06547 hypothetical protein; Provisional
Probab=98.85 E-value=1.7e-08 Score=100.77 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=72.1
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH--HHHHHHHHH--------------------
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK--VQCLTSASS-------------------- 73 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~--~~~~~~~~~-------------------- 73 (761)
...+.+|++.|++||||||+|+.|++.++ +..++.|.+..++.. +. ......+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence 45678999999999999999999999987 567888888765432 11 111111110
Q ss_pred HHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 74 ~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.+..+..+|++++...... ++++ .+ +..+..||+++|.+++.+|..+|..+
T Consensus 90 ~l~~~~vVIvEG~~al~~~---~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~ 141 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAA---NVALASL-LGEVLTVWLDGPEALRKERALARDPD 141 (172)
T ss_pred EeCCCCeEEEEehhhccHH---HHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch
Confidence 0112345889997554333 3333 33 33467999999999999999999864
No 97
>PRK13946 shikimate kinase; Provisional
Probab=98.84 E-value=2.5e-08 Score=100.33 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c-----------HH-HH-HHHHHHHHHCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T-----------KV-QC-LTSASSALKKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~-----------~~-~~-~~~~~~~L~~g~~VIID 84 (761)
.+..|+|+|+|||||||+++.|++.++ +.+++.|.+.....+ + +. .. .+.+...+..+..||..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg--~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~ 86 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG--LPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT 86 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC--CCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 345799999999999999999999999 556888875321111 0 00 11 13334444455556665
Q ss_pred C--CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319 85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 85 ~--tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e 149 (761)
+ +.+....|..+ +..++ .|||++|.+++.+|+.+|..++- +....+.+.+.++++.+.
T Consensus 87 ggg~~~~~~~r~~l---~~~~~---~v~L~a~~e~~~~Rl~~r~~rp~-~~~~~~~~~i~~~~~~R~ 146 (184)
T PRK13946 87 GGGAFMNEETRAAI---AEKGI---SVWLKADLDVLWERVSRRDTRPL-LRTADPKETLARLMEERY 146 (184)
T ss_pred CCCCcCCHHHHHHH---HcCCE---EEEEECCHHHHHHHhcCCCCCCc-CCCCChHHHHHHHHHHHH
Confidence 4 45666666655 33343 69999999999999998876431 122345677788777765
No 98
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.84 E-value=2.7e-08 Score=102.96 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=88.9
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC-------------CCCC----cH----HHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK-------------GKSG----TK----VQCLTSA 71 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~-------------~~~~----~~----~~~~~~~ 71 (761)
....+.+|+|+|+||.|||++|++|..-+. ....+++..+++. .... .+ ..+++.+
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl 87 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL 87 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999986643 5566666555431 0000 01 1234566
Q ss_pred HHHHH--CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc-CCCCCCChHHHHHHHHhh
Q 004319 72 SSALK--KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE-GNLQGGKAAAVVNRMLQK 147 (761)
Q Consensus 72 ~~~L~--~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~-~~~~~~v~~~vI~r~~~~ 147 (761)
...|. .|..-|+|+||.+++.|+.+.+. +..++.+.+|..-|..+.+++++..+.... ....+..+++++..+.++
T Consensus 88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R 167 (222)
T PF01591_consen 88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR 167 (222)
T ss_dssp HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 66676 45567999999999999999999 778887777777788888888888776532 223345677788777665
Q ss_pred h-------cCCC--ccCCceEEEEcC
Q 004319 148 K-------ELPK--LSEGFSRITLCQ 164 (761)
Q Consensus 148 ~-------e~P~--~~EgFd~V~vv~ 164 (761)
. |+-+ ..+....|-+++
T Consensus 168 I~~Ye~~YEpl~~e~d~~lsyIKiin 193 (222)
T PF01591_consen 168 IEHYEKVYEPLDEEEDEDLSYIKIIN 193 (222)
T ss_dssp HHHHHTT-----TTTTTTSEEEEEET
T ss_pred HHhhcccccccccccccCceEEEEEc
Confidence 3 3322 245555555554
No 99
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.9e-08 Score=103.97 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=98.1
Q ss_pred hhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHH
Q 004319 559 SWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGM 630 (761)
Q Consensus 559 ~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~ 630 (761)
-|-.+++.--..- ..+||+|.+ ||++.|.. -....|+|+|-.++.|.+++||+.+|+++|..|...++
T Consensus 147 ~WV~NiL~~~aE~----driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~ 222 (310)
T KOG3969|consen 147 NWVYNILEKKAED----DRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSR 222 (310)
T ss_pred HHHHHHHhccccc----cceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHH
Confidence 4877766433333 348888754 79999976 34467999999888999999999999999999999999
Q ss_pred HHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhc
Q 004319 631 KWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNH 699 (761)
Q Consensus 631 ~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~ 699 (761)
.++...+.-+ ...+++-||..||.+|||+|++.-.+. |=..-.++-=+.++|||+.|+-.
T Consensus 223 ~~i~~~y~v~-~dqlrmf~HYqPSyYHlHVHi~nik~~--------~~~~~~~~rAilLddVI~nL~~~ 282 (310)
T KOG3969|consen 223 EAIPQRYGVD-PDQLRMFFHYQPSYYHLHVHIVNIKHD--------HAPGSGCGRAILLDDVIENLELD 282 (310)
T ss_pred HHHHHHhCCC-chhEEEEEEecCceEEEEEEEEeccCC--------CCCCccccceeeHHHHHHHhccC
Confidence 9877654333 246899999999999999999987665 11112234557799999999764
No 100
>PLN02643 ADP-glucose phosphorylase
Probab=98.83 E-value=1.1e-08 Score=112.22 Aligned_cols=108 Identities=15% Similarity=0.262 Sum_probs=80.8
Q ss_pred EEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC----
Q 004319 578 LLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP---- 653 (761)
Q Consensus 578 vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p---- 653 (761)
+||++|.+++|.|.+|..++|+||||| +|+.++.+|+++++..|..+++.....+.+.+... .+++++|.+|
T Consensus 211 iV~en~~f~Af~p~ap~~P~evlIiPK-rH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~---pyN~~~~~~P~~~~ 286 (336)
T PLN02643 211 LIDESSHFVSIAPFAATFPFEIWIIPR-DHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDP---PYNYMIQTSPLGVE 286 (336)
T ss_pred EEEeCCCEEEEeccccCCCCEEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC---CceeeeecCCCccc
Confidence 899999999999999999999999999 89999999999998888887776555554443332 3788888887
Q ss_pred ----cccceeeeeecCCccccccccccccccc--Cccccc---CHHHHHHHHHh
Q 004319 654 ----SMRQLHLHVISQDFNSKHLKNKKHWNSF--NTAFFC---DSVDVLEEISN 698 (761)
Q Consensus 654 ----Sv~HLHlHVIs~d~~s~~lk~kkH~nsF--~t~fFv---~~~~v~~~l~~ 698 (761)
...|+|+|++.+ ++. .-.| .|++|+ +-++..+.|+.
T Consensus 287 ~~~~~~~H~hihi~PR------l~~---~aGfElg~g~~in~~~PE~aA~~LR~ 331 (336)
T PLN02643 287 ESNLPYTHWFLQIVPQ------LSG---VGGFELGTGCYINPVFPEDAAKVLRE 331 (336)
T ss_pred cCcccceEEEEEEecC------cCC---ccceeccCCCeeCCCCHHHHHHHHHh
Confidence 236666799985 222 1233 467665 35566666643
No 101
>PRK13948 shikimate kinase; Provisional
Probab=98.82 E-value=4.5e-08 Score=98.56 Aligned_cols=136 Identities=17% Similarity=0.119 Sum_probs=81.7
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHH-HHHHHHHHCCCcEE
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCL-TSASSALKKGKSVF 82 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~-~~~~~~L~~g~~VI 82 (761)
...+..|+|+|++||||||+++.|++.++ +.+++.|.+.+...+ .+.++. +.+.+.+..+..||
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg--~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VI 84 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM--LHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVI 84 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 34678999999999999999999999999 555888876432211 111122 23333344444444
Q ss_pred Ee--CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEE
Q 004319 83 LD--RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (761)
Q Consensus 83 ID--~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V 160 (761)
.- ++......|..+ ++.+. +|||++|.+++.+|+..+ .+ +.+....+.+.+.+++.+.+ |.+ +..+.+
T Consensus 85 a~GgG~v~~~~n~~~l---~~~g~---vV~L~~~~e~l~~Rl~~~-~R-Pll~~~~~~~~l~~l~~~R~-~~Y-~~a~~~ 154 (182)
T PRK13948 85 SLGGGTFMHEENRRKL---LSRGP---VVVLWASPETIYERTRPG-DR-PLLQVEDPLGRIRTLLNERE-PVY-RQATIH 154 (182)
T ss_pred ECCCcEEcCHHHHHHH---HcCCe---EEEEECCHHHHHHHhcCC-CC-CCCCCCChHHHHHHHHHHHH-HHH-HhCCEE
Confidence 42 466777777766 33444 789999999999999432 22 22222234445566555543 222 224544
Q ss_pred EEcC
Q 004319 161 TLCQ 164 (761)
Q Consensus 161 ~vv~ 164 (761)
+..+
T Consensus 155 i~t~ 158 (182)
T PRK13948 155 VSTD 158 (182)
T ss_pred EECC
Confidence 4443
No 102
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.81 E-value=4e-08 Score=99.95 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=79.2
Q ss_pred hcccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC---C----CcHHH----HHHHHHHHHHCCC
Q 004319 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---S----GTKVQ----CLTSASSALKKGK 79 (761)
Q Consensus 14 ~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~---~----~~~~~----~~~~~~~~L~~g~ 79 (761)
....+++.+|+|+|++||||||+++.|...+ +....+++.|.++... . ..... +...+...+..|.
T Consensus 18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~ 97 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGL 97 (198)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCC
Confidence 3456788999999999999999999998875 2346778888875321 1 11111 2234555667888
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHH
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR 121 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R 121 (761)
.||.+..+....+|..++++ ...+ +.+|||++|.+++.+|
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR 138 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence 88888777788999999988 5543 5579999999999999
No 103
>PRK01184 hypothetical protein; Provisional
Probab=98.80 E-value=4.2e-08 Score=98.23 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC-----CCC------Cc-----HHH-----HHHHHHHHHHC-
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK-----GKS------GT-----KVQ-----CLTSASSALKK- 77 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~-----~~~------~~-----~~~-----~~~~~~~~L~~- 77 (761)
.+|+|+|+|||||||+++ +++.++ +.+++. |.+++ +.. +. ... ....+...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK 78 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence 489999999999999987 788888 666775 55532 111 00 000 11222233333
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 -g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+..||+|+. ....++..+.+. .+..+.+|++++|.+++.+|+..|..
T Consensus 79 ~~~~vvidg~-r~~~e~~~~~~~--~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 79 GDEVVVIDGV-RGDAEVEYFRKE--FPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred CCCcEEEeCC-CCHHHHHHHHHh--CCcccEEEEEECCHHHHHHHHHHcCC
Confidence 577999996 566676666555 22345689999999999999999864
No 104
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.80 E-value=2.5e-08 Score=99.23 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=69.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC-----CCCcHHH----HHHHHHH-HHHCCCcEEEe
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-----KSGTKVQ----CLTSASS-ALKKGKSVFLD 84 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~-----~~~~~~~----~~~~~~~-~L~~g~~VIID 84 (761)
.++.+|+++|+|||||||+|+.+...+. ..+.+++.|.+++. ....... ....+.+ ....|..||+|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~ 84 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVT 84 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567999999999999999999998775 33667888887531 1111111 1122223 23578889999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
+++.....+...... .....+|||++|.+++.+|+..
T Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 85 TISMFDEIYAYNRKH---LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred eCCcHHHHHHHHHhh---cCCeEEEEEeCCHHHHHHhchh
Confidence 988755444444433 1123589999999999999754
No 105
>PLN02842 nucleotide kinase
Probab=98.80 E-value=7.4e-08 Score=109.93 Aligned_cols=99 Identities=26% Similarity=0.379 Sum_probs=70.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC----CCc
Q 004319 24 IMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK----GKS 80 (761)
Q Consensus 24 vLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~----g~~ 80 (761)
+|.|+|||||||+|+.|++.++ +.+++.+++ + +|...+...+...+..++.. .+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg--~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G 78 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG--LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKG 78 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCc
Confidence 5899999999999999999998 667775443 2 23333444445555555532 345
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+|||+...+..+...+... -.. -.+|+|++|.+++.+|+..|..
T Consensus 79 ~ILDGfPRt~~Qa~~Le~~~~~P---DlVI~LDvpdevlleRl~gR~~ 123 (505)
T PLN02842 79 WLLDGYPRSFAQAQSLEKLKIRP---DIFILLDVPDEILIDRCVGRRL 123 (505)
T ss_pred EEEeCCCCcHHHHHHHHhcCCCC---CEEEEEeCCHHHHHHHHhcccc
Confidence 9999988887776555433 222 2489999999999999998864
No 106
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.79 E-value=5.4e-09 Score=103.44 Aligned_cols=132 Identities=20% Similarity=0.365 Sum_probs=99.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEeccccc-CCC----------CCcHHHHHHHHHHHHH---------
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTIN-KGK----------SGTKVQCLTSASSALK--------- 76 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~-~~~----------~~~~~~~~~~~~~~L~--------- 76 (761)
.|+.|+|+|+||||||++.+..... +...++|-|++. +.- .+..+..++-+..+..
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv 81 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV 81 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence 4789999999999999999864432 234566777774 111 1111111233333333
Q ss_pred ----------CCC-cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319 77 ----------KGK-SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (761)
Q Consensus 77 ----------~g~-~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~ 144 (761)
.|+ .+++|..++.+.+|..+.++ +.+|+.+-.||+....+.|++|+..|.+-. ..+-++|++|
T Consensus 82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~-----k~~~dtiRki 156 (291)
T KOG4622|consen 82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAE-----KQKNDTIRKI 156 (291)
T ss_pred eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccch-----hCccHHHHHH
Confidence 122 36788889999999999999 999999999999999999999999998753 5788999999
Q ss_pred HhhhcCCCccCCc
Q 004319 145 LQKKELPKLSEGF 157 (761)
Q Consensus 145 ~~~~e~P~~~EgF 157 (761)
+.++|.|...|.+
T Consensus 157 ~EklE~PD~~ea~ 169 (291)
T KOG4622|consen 157 FEKLEDPDEIEAL 169 (291)
T ss_pred HHhccCccHHHHH
Confidence 9999999987776
No 107
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.79 E-value=3.4e-08 Score=97.08 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=71.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHH-HHHHHHHHCCCcEEE
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCL-TSASSALKKGKSVFL 83 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~-~~~~~~L~~g~~VII 83 (761)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ ...+.. ..+.+.+.....||.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~ 79 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG--YDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIS 79 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4567899999999999999999999998 556788776422211 011111 222333333333443
Q ss_pred eCC--CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319 84 DRC--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 84 D~t--n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e 149 (761)
.+. .+....|..+ +..+ ..|+|++|.+.+.+|+.+|..++- .......+.+..++....
T Consensus 80 ~g~~~~~~~~~r~~l---~~~~---~~v~l~~~~~~~~~R~~~~~~r~~-~~~~~~~~~~~~~~~~~~ 140 (175)
T PRK00131 80 TGGGAVLREENRALL---RERG---TVVYLDASFEELLRRLRRDRNRPL-LQTNDPKEKLRDLYEERD 140 (175)
T ss_pred eCCCEeecHHHHHHH---HhCC---EEEEEECCHHHHHHHhcCCCCCCc-CCCCChHHHHHHHHHHHH
Confidence 332 2233333332 3333 478999999999999988765221 111233445555555543
No 108
>PRK00625 shikimate kinase; Provisional
Probab=98.78 E-value=3.6e-08 Score=98.51 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CC--CCcHHH------------HHHHHHHHHHCCCcEEEe
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GK--SGTKVQ------------CLTSASSALKKGKSVFLD 84 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~--~~~~~~------------~~~~~~~~L~~g~~VIID 84 (761)
.|+|+|+|||||||+++.|++.++ +.+++.|.+-. +. ..+..+ ....+.+.+.....||..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~ 79 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVAL 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEEC
Confidence 489999999999999999999998 66688887632 11 011111 112333444444445544
Q ss_pred C--CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 85 ~--tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+ +....+.+.. ++..+. +|||++|.+++.+|+.+|..
T Consensus 80 GGg~~~~~e~~~~---l~~~~~---Vv~L~~~~e~l~~Rl~~R~~ 118 (173)
T PRK00625 80 GGGTLMIEPSYAH---IRNRGL---LVLLSLPIATIYQRLQKRGL 118 (173)
T ss_pred CCCccCCHHHHHH---HhcCCE---EEEEECCHHHHHHHHhcCCC
Confidence 4 3333333332 233444 89999999999999998865
No 109
>PRK13949 shikimate kinase; Provisional
Probab=98.77 E-value=6.6e-08 Score=96.16 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=60.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c------------HHHHHHHHHHHHHCCCcEEE-eCCC-
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFL-DRCN- 87 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~------------~~~~~~~~~~~L~~g~~VII-D~tn- 87 (761)
|+|+|+|||||||+++.|++.++ +.+++.|.+.....+ + ..+....+...+.....+|| ++..
T Consensus 4 I~liG~~GsGKstl~~~La~~l~--~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~ 81 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG--LSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGA 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 89999999999999999999999 556888766321111 0 01112222232443345555 5422
Q ss_pred -CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 88 -~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
.....+..+ ++.+. +|||++|.+++.+|+..+
T Consensus 82 ~~~~~~~~~l---~~~~~---vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 82 PCFFDNMELM---NASGT---TVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred cCCHHHHHHH---HhCCe---EEEEECCHHHHHHHHhcC
Confidence 233444433 34454 789999999999999754
No 110
>PRK13947 shikimate kinase; Provisional
Probab=98.77 E-value=4.6e-08 Score=96.52 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=64.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCc-------------HHHHHHHHHHHHHCCCcEEEeCC---
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDRC--- 86 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~-------------~~~~~~~~~~~L~~g~~VIID~t--- 86 (761)
|+|+|+|||||||+|+.|++.++ +.+++.|.+.+...+. .......+.+.+.....+||...
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLS--FGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC--CCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 89999999999999999999999 6668888774332211 11122334444554445555432
Q ss_pred CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.+....+..+ ++.+. +|||++|.+++.+|+..|..+
T Consensus 82 vl~~~~~~~l---~~~~~---vv~L~~~~~~l~~Rl~~r~~r 117 (171)
T PRK13947 82 VLNPENVVQL---RKNGV---VICLKARPEVILRRVGKKKSR 117 (171)
T ss_pred cCCHHHHHHH---HhCCE---EEEEECCHHHHHHHhcCCCCC
Confidence 2444443332 44443 899999999999999887553
No 111
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.77 E-value=6.3e-08 Score=96.27 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=71.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCC-------CcHHHH----HHHHHHHHHCCCcEEE
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-------GTKVQC----LTSASSALKKGKSVFL 83 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~-------~~~~~~----~~~~~~~L~~g~~VII 83 (761)
....+|+|+|+|||||||+|+.|+..+. ..+.+++.|.++.... ..+... ...+...+..|..||+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3457999999999999999999988763 3467788887753211 111111 1222333466888999
Q ss_pred eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHH
Q 004319 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|+++.....|..+.... ..+.+|+|++|.+++.+|+
T Consensus 82 ~~~~~~~~~~~~l~~~~---~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 82 SAISPYRETREEVRANI---GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred ecCCCCHHHHHHHHhhc---CCeEEEEEcCCHHHHHHhC
Confidence 99887777777665551 2467899999999999995
No 112
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.75 E-value=7.9e-08 Score=95.99 Aligned_cols=108 Identities=20% Similarity=0.309 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-----------CCC--------Cc-----HHHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----------GKS--------GT-----KVQCLTSASSALK 76 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-----------~~~--------~~-----~~~~~~~~~~~L~ 76 (761)
.||+|-|+|.|||||+|+.|...+..+|.++..|.+.+ +.. +. .......+.....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~ 81 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR 81 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999988842 100 01 1112356677778
Q ss_pred CCCcEEEeCCCCCHHH-HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 77 KGKSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 77 ~g~~VIID~tn~~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
.|.+||+|.......+ ...|.++ -.++.+.+|-+.||.+++.+|...|.++.
T Consensus 82 aG~~VIvD~v~~~~~~l~d~l~~~-L~~~~vl~VgV~Cpleil~~RE~~RgDR~ 134 (174)
T PF07931_consen 82 AGNNVIVDDVFLGPRWLQDCLRRL-LAGLPVLFVGVRCPLEILERRERARGDRP 134 (174)
T ss_dssp TT-EEEEEE--TTTHHHHHHHHHH-HTTS-EEEEEEE--HHHHHHHHHHHTSSS
T ss_pred CCCCEEEecCccCcHHHHHHHHHH-hCCCceEEEEEECCHHHHHHHHHhcCCcc
Confidence 9999999997777765 4555454 13567788889999999999999999854
No 113
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.74 E-value=9.3e-08 Score=111.89 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=81.8
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEEecccccCCCCC----c---HHH----HHHHHHHHHHCCCcE
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKGKSG----T---KVQ----CLTSASSALKKGKSV 81 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~I~~D~i~~~~~~----~---~~~----~~~~~~~~L~~g~~V 81 (761)
...+.+|+|+|+|||||||+|+.|++.++. .+.+++.|.++.+..+ + +.. +...+...++.|..+
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~v 468 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIA 468 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 345679999999999999999999998873 3577899988653321 1 111 113445567889999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|+|.++.....|..++++ +..+ .+.+|+|++|.++|.+|+
T Consensus 469 I~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~ 509 (568)
T PRK05537 469 ICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRD 509 (568)
T ss_pred EEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhc
Confidence 999999999999999999 6655 366899999999999996
No 114
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.73 E-value=1.5e-07 Score=112.13 Aligned_cols=104 Identities=27% Similarity=0.306 Sum_probs=80.7
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC----c---HHH----HHHHHHHHHHCCCcEE
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----T---KVQ----CLTSASSALKKGKSVF 82 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~----~---~~~----~~~~~~~~L~~g~~VI 82 (761)
..+|.+|+|+|+|||||||+|+.|++.+. ..+.+++.|.++..... + +.. +...+...+..|..||
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vi 536 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVL 536 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34689999999999999999999998863 45788999999753321 1 111 2244455668899999
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
+|+++..+.+|..++++ ... .+.+|||++|.++|.+|.
T Consensus 537 vda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 537 VSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred EECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence 99999999999988877 443 567899999999999994
No 115
>PRK03839 putative kinase; Provisional
Probab=98.72 E-value=4.5e-08 Score=97.79 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-CC----cH-----HHHHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG----TK-----VQCLTSASSALKKGKSVFLDRCNLERE 91 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-~~----~~-----~~~~~~~~~~L~~g~~VIID~tn~~~~ 91 (761)
.|+|+|+|||||||+|++|++.++ +.+++.|.+.... .. .. ..+...+.+. ..+..||+|+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vIidG~~~--- 75 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE-FKEKNVVLDGHLS--- 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-ccCCCEEEEeccc---
Confidence 589999999999999999999999 6668877663111 11 11 1111222222 2356799999421
Q ss_pred HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
. +...+. +|+|+++.+++.+|+..|..
T Consensus 76 ---~---l~~~~~---vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 76 ---H---LLPVDY---VIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred ---c---ccCCCE---EEEEECCHHHHHHHHHHcCC
Confidence 1 122333 78999999999999998863
No 116
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.71 E-value=1.2e-07 Score=91.62 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=63.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c------------HHHHHHHHHHHHHCCCcEEEeCCC--
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLDRCN-- 87 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~------------~~~~~~~~~~~L~~g~~VIID~tn-- 87 (761)
|+|+|+|||||||+|+.|++.++ +..++.|.+.....+ . .......+...+.....+||+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG--LPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC--CCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 78999999999999999999998 666888877422111 0 011112233344444556666432
Q ss_pred -CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 88 -~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.....|..+ ...+ .+|||++|.+++.+|+.+|..+
T Consensus 80 i~~~~~~~~~---~~~~---~~i~l~~~~e~~~~R~~~r~~r 115 (154)
T cd00464 80 VLREENRRLL---LENG---IVVWLDASPEELLERLARDKTR 115 (154)
T ss_pred cCcHHHHHHH---HcCC---eEEEEeCCHHHHHHHhccCCCC
Confidence 333332222 3333 4899999999999999998743
No 117
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.71 E-value=6.7e-08 Score=97.19 Aligned_cols=137 Identities=13% Similarity=0.180 Sum_probs=79.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE---------------------ecccc----cCCCCCcHHH--------
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI---------------------CQDTI----NKGKSGTKVQ-------- 66 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I---------------------~~D~i----~~~~~~~~~~-------- 66 (761)
..+|+|+||+||||+|+++.|.+.++..+..+ +.+.+ .++.+..+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 35899999999999999999998863112111 11111 1111111000
Q ss_pred HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (761)
Q Consensus 67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~ 145 (761)
....+...+..|+.+|+|.. ...+..++.......+||+. .+.+++.+|+.+|.. ..++.+-.|+.
T Consensus 82 ~~~~i~~~~~~~~~~ild~~------~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~-------~~~~~i~~rl~ 148 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDID------PQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT-------ETAERIQKRLA 148 (184)
T ss_pred CHHHHHHHHHcCCeEEEEEC------HHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence 11356777888999999983 33333331223345688887 556789999998875 23344444444
Q ss_pred hhhcCCCccCCceEEEEcCChhhH
Q 004319 146 QKKELPKLSEGFSRITLCQNENDV 169 (761)
Q Consensus 146 ~~~e~P~~~EgFd~V~vv~~~~ei 169 (761)
...........|+.+++.++.++.
T Consensus 149 ~a~~~~~~~~~fd~~I~n~~l~~~ 172 (184)
T smart00072 149 AAQKEAQEYHLFDYVIVNDDLEDA 172 (184)
T ss_pred HHHHHHhhhccCCEEEECcCHHHH
Confidence 332212223458888777654443
No 118
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.70 E-value=3.4e-07 Score=93.71 Aligned_cols=119 Identities=25% Similarity=0.346 Sum_probs=76.4
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCC-----------------CCcHHHHHHHHHHHHHCC-
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGK-----------------SGTKVQCLTSASSALKKG- 78 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~-----------------~~~~~~~~~~~~~~L~~g- 78 (761)
.++.+|.|+|++|||||||++.|.+.++ ..+..+++|.+.... ...+..+.+.+. .+..|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~l~~~~ 82 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLK-ALKAGK 82 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHH-HHHcCC
Confidence 4678999999999999999999999884 346678888763211 001222222222 22222
Q ss_pred ------------------------CcEEEeCCCCCH-HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319 79 ------------------------KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (761)
Q Consensus 79 ------------------------~~VIID~tn~~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~ 133 (761)
..+|+|+..+.. .....+.++ .|++++|.+++++|..+|..+.++
T Consensus 83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~--------~I~v~~~~~~~~~R~~~Rd~~~rg-- 152 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDI--------KIFVDTPLDIRLIRRLKRDVNERG-- 152 (209)
T ss_pred ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhce--------eEEEeCChhHHHHHHHhhcchhcC--
Confidence 237788865543 232333333 889999999999999999854322
Q ss_pred CCChHHHHHHHHhhh
Q 004319 134 GGKAAAVVNRMLQKK 148 (761)
Q Consensus 134 ~~v~~~vI~r~~~~~ 148 (761)
..+++++.++.++.
T Consensus 153 -~~~e~~~~~~~~~~ 166 (209)
T PRK05480 153 -RSLESVINQYLSTV 166 (209)
T ss_pred -CCHHHHHHHHHHhh
Confidence 45666776665543
No 119
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.70 E-value=2e-07 Score=92.91 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=76.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC---cH----------HHHHHHHHHHHHCCCcEEEeC-
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---TK----------VQCLTSASSALKKGKSVFLDR- 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~---~~----------~~~~~~~~~~L~~g~~VIID~- 85 (761)
...|+|+|++||||||+++.|+..++ +.+++.|.......+ .+ ......+...+.....+|+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~--~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC--CcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 34699999999999999999999988 556887764321111 00 111123333344445566654
Q ss_pred --CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEE
Q 004319 86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (761)
Q Consensus 86 --tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V 160 (761)
.......|..+ +..+. +|||++|.++|.+|+..+..++- ..+..+.+.+..++... .|.+.+-.+.+
T Consensus 82 gg~v~~~~~~~~l---~~~~~---vv~L~~~~e~~~~Ri~~~~~rP~-~~~~~~~~~~~~l~~~R-~~~Y~~~Ad~~ 150 (172)
T PRK05057 82 GGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPL-LQVDDPREVLEALANER-NPLYEEIADVT 150 (172)
T ss_pred CchhCCHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCC-CCCCCHHHHHHHHHHHH-HHHHHhhCCEE
Confidence 23344554433 34454 89999999999999986654432 22223345566655554 34433323433
No 120
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.69 E-value=4.7e-07 Score=90.21 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEEec----c--------------cc----cCCCCCcHH-------HHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ----D--------------TI----NKGKSGTKV-------QCLT 69 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~--~~~I~~----D--------------~i----~~~~~~~~~-------~~~~ 69 (761)
.+++|+|+|||||||+++.|+..++.. ..++.. + .+ .++.+.... ....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 378999999999999999998876521 222111 1 00 011110000 0012
Q ss_pred HHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 70 ~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+...+..|..||+|+. ...+..+.+. .....+|+|++|.+++.+|+..|..
T Consensus 82 ~i~~~~~~g~~vv~~g~---~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~R~~ 133 (179)
T TIGR02322 82 EIDQWLEAGDVVVVNGS---RAVLPEARQR---YPNLLVVNITASPDVLAQRLAARGR 133 (179)
T ss_pred HHHHHHhcCCEEEEECC---HHHHHHHHHH---CCCcEEEEEECCHHHHHHHHHHcCC
Confidence 33456678889999984 2233333222 1245688999999999999999864
No 121
>PRK06696 uridine kinase; Validated
Probab=98.69 E-value=1.5e-07 Score=97.68 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=68.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCC-----------------CcHHHHHHHHHHHH-
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS-----------------GTKVQCLTSASSAL- 75 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L- 75 (761)
.+.|.+|.|.|+|||||||||++|++.+ +..+.+++.|++...+. ..+..+.+.+...+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 4578999999999999999999999988 45567778888742210 01111111111111
Q ss_pred ---------------------------HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 76 ---------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 76 ---------------------------~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..+..||+|+..+.......+.+ ..||+++|.+++.+|+..|..
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d--------~~i~v~~~~e~~~~R~~~Rd~ 169 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWD--------YKIFLDTDFEVSRRRGAKRDT 169 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCC--------EEEEEECCHHHHHHHHHHhhh
Confidence 12335778886665443333322 389999999999999999974
No 122
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=3.6e-08 Score=95.38 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=105.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC--CcH-------HHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--GTK-------VQCLTSASSALKKGKSVFLDRCNLE 89 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~--~~~-------~~~~~~~~~~L~~g~~VIID~tn~~ 89 (761)
+|.+.++.|+.||||||+...+...+...+.+++.|.+..+.. .+. +.....+...++.+..++.+.|...
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~ 80 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG 80 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4789999999999999998876666555678899999953211 111 2233555667789999999998777
Q ss_pred HHHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCceEEEEcCCh
Q 004319 90 REQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRITLCQNE 166 (761)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-e-~P~~~EgFd~V~vv~~~ 166 (761)
...++....-+..|+-++..|+-++ .|+..+|+..|-...|+ ++|+++|++.|.+. + .+..-+-.|+.++.++.
T Consensus 81 ~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH---~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS 157 (187)
T COG4185 81 PSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH---DIPEDKIRRRYRRSLELLAQALTLADRATIYDNS 157 (187)
T ss_pred chHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCC
Confidence 7666544333888998888777765 58999999999887776 89999999988763 2 23334445667777664
Q ss_pred h
Q 004319 167 N 167 (761)
Q Consensus 167 ~ 167 (761)
.
T Consensus 158 ~ 158 (187)
T COG4185 158 R 158 (187)
T ss_pred C
Confidence 3
No 123
>PRK08356 hypothetical protein; Provisional
Probab=98.68 E-value=5.3e-07 Score=91.51 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=66.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-----cC--------------C-----CCCcH----------H
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----NK--------------G-----KSGTK----------V 65 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-----~~--------------~-----~~~~~----------~ 65 (761)
..+|+|+|+|||||||+|+.|. .++ +.+|+..+. +. + ....+ .
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g--~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKG--FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCC--CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 3579999999999999999995 566 556665432 11 0 00000 0
Q ss_pred HHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 66 ~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
...+.+.+.+.....+|||+. .+..++..+... .+ .+|++++|.+++.+|+.+|...
T Consensus 82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~--~~---~vi~l~~~~~~~~~Rl~~R~~~ 138 (195)
T PRK08356 82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM--GG---KVIYVEAKPEIRFERLRRRGAE 138 (195)
T ss_pred HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhc--CC---EEEEEECCHHHHHHHHHhcCCc
Confidence 011234444444457999996 777777766433 12 4789999999999999999763
No 124
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=98.66 E-value=6.6e-09 Score=103.55 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=89.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCC---CCCCCCCCcccCCCCCCCccccccccccccccccccccccccccc-CCCCc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDA---PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVK-GTENP 262 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 262 (761)
.|+-+- ..+...++.|++.++..-- +.....|... -|++++++=.++.|.+.+.|..++++.+ .+..-
T Consensus 31 gGGVd~-AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Av-------it~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a 102 (179)
T COG2110 31 GGGVAG-AIHRAAGPQLEEECAEIAPKRGGGRIPVGEAV-------ITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAA 102 (179)
T ss_pred CCcHHH-HHHHHhhHHHHHHHHHHhhhhcCCCCCceEEE-------EccCcCCCCCEEEecCCCcccCCChhHHHHHHHH
Confidence 355554 5677778889988888753 2111113332 5778899999999999998876542221 12333
Q ss_pred cccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEecccc
Q 004319 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK--LGNARLVLVDLTQ 323 (761)
Q Consensus 263 ~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~--~~~i~~v~vD~~~ 323 (761)
.+.++. ...+.+++||||||||||+||||+++++++++.+|++|+.. ...+.++..+.+.
T Consensus 103 ~~~~l~-~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v~~~~e~ 164 (179)
T COG2110 103 YRAALR-LAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFVVYGEET 164 (179)
T ss_pred HHHHHH-HHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEEecCchh
Confidence 445555 66677899999999999999999999999999999999975 2224444444433
No 125
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.64 E-value=3.4e-07 Score=93.42 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=71.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------C--C----------CC--cHH-----------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G--K----------SG--TKV----------- 65 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~--~----------~~--~~~----------- 65 (761)
.+.+|+++|+|||||||+|+.|+..++.. .++..|.+++ + . .. ...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~ 80 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR 80 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCe-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence 46799999999999999999999998842 3466666532 1 0 00 000
Q ss_pred ----HHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeC-CHHHHHHHHHhcccc
Q 004319 66 ----QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEH 128 (761)
Q Consensus 66 ----~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~-p~e~~~~R~~~R~~~ 128 (761)
.+...+...+..|.++|+|++++....+... ...+. .++++.+ +.++..+|+..|...
T Consensus 81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~---~~~~v--~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN---RTNNI--RAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH---HhcCe--EEEEEEeCCHHHHHHHHHHHhhc
Confidence 0224567788999999999999998877533 22222 3444443 678888999999864
No 126
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.63 E-value=7.4e-07 Score=88.67 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE--------------------ecccc----cCCCCCc--------HHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARI--------------------CQDTI----NKGKSGT--------KVQCL 68 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I--------------------~~D~i----~~~~~~~--------~~~~~ 68 (761)
.+|+|+|++||||||+++.|+..++..+..+ +.+.+ ..+.... .....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 4799999999999999999998654211111 11111 0011000 00013
Q ss_pred HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (761)
Q Consensus 69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~ 147 (761)
..+...+..|+.+|+|.. ...+..+ ......+.++++..+.+.+.+|+.+|... ..+.+..++.+.
T Consensus 82 ~~i~~~~~~g~~vi~d~~------~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~-------~~~~i~~rl~~~ 148 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEID------VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTD-------SEEVIERRLAKA 148 (180)
T ss_pred HHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 557788899999999973 2222233 33333344555577789999999988652 223333333332
Q ss_pred hcCCCccCCceEEEEcCCh
Q 004319 148 KELPKLSEGFSRITLCQNE 166 (761)
Q Consensus 148 ~e~P~~~EgFd~V~vv~~~ 166 (761)
.+.-...+.||.++..++.
T Consensus 149 ~~~~~~~~~~d~~i~n~~~ 167 (180)
T TIGR03263 149 KKEIAHADEFDYVIVNDDL 167 (180)
T ss_pred HHHHhccccCcEEEECCCH
Confidence 2211123447888766543
No 127
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.62 E-value=2.2e-07 Score=95.33 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=76.5
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC-C-------------------CeEEEecccc----cCCCCCcHHH-----
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-R-------------------PWARICQDTI----NKGKSGTKVQ----- 66 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~-------------------~~~~I~~D~i----~~~~~~~~~~----- 66 (761)
..+.+.+|+|+|+|||||||+++.|.+... . .+..++.+.+ ..+.+..+.+
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 456788999999999999999999975421 0 0111111111 0111111100
Q ss_pred ---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 67 ---~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
-...+...+..|+.+|+|... ..+..+.+. ...+.+|++ .++.+++.+|+.+|..+ ..++...
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~l~~~---~pd~~~if~~pps~e~l~~Rl~~R~~~-------~~~~~~~ 155 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKVDV---QGAASIKRL---VPEAVFIFLAPPSMDELTRRLELRRTE-------SPEELER 155 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEcCH---HHHHHHHHh---CCCeEEEEEeCCCHHHHHHHHHHcCCC-------CHHHHHH
Confidence 013567788999999998722 233333222 223344444 35578899999998753 2344444
Q ss_pred HHHhhhcCCCccCCceEEEEcCChhhHHHH
Q 004319 143 RMLQKKELPKLSEGFSRITLCQNENDVQAA 172 (761)
Q Consensus 143 r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~ 172 (761)
|+...+......+.|+. ++++...+++++
T Consensus 156 Rl~~~~~e~~~~~~~~~-~iId~~~~~e~v 184 (206)
T PRK14738 156 RLATAPLELEQLPEFDY-VVVNPEDRLDEA 184 (206)
T ss_pred HHHHHHHHHhcccCCCE-EEECCCCCHHHH
Confidence 44443322212233544 455543444443
No 128
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.61 E-value=9.9e-08 Score=91.15 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC----------CcHHHHHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------GTKVQCLTSASSALKKGKSVFLDRCNLERE 91 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~----------~~~~~~~~~~~~~L~~g~~VIID~tn~~~~ 91 (761)
+|+|+|+|||||||+|+.|++.++ +.+++.|.+..... ......+......+..+..||+|+......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~--~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~ 78 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG--LPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV 78 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE
Confidence 589999999999999999999998 55677775532111 111112222233355566899999442110
Q ss_pred HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
-.... ...|+|++|.+++.+|+.+|..
T Consensus 79 ------~~~~~---~~~i~l~~~~~~r~~R~~~r~~ 105 (147)
T cd02020 79 ------VFPDA---DLKIFLTASPEVRAKRRAKQLQ 105 (147)
T ss_pred ------EcCCC---CEEEEEECCHHHHHHHHHHHHH
Confidence 01112 2379999999999999999753
No 129
>PTZ00301 uridine kinase; Provisional
Probab=98.61 E-value=8.7e-07 Score=91.29 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=76.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALK 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~ 76 (761)
++.||.|.|+|||||||||++|.+.+ + .....++.|.+..... .+++.+.+.+ ..|+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~ 80 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELK 80 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHH
Confidence 35799999999999999999987765 2 1244778888743210 0122222333 4444
Q ss_pred CC-------------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319 77 KG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (761)
Q Consensus 77 ~g-------------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~ 131 (761)
.| +.+|+|+..... ...+.++ .++ .||+++|.++++.|..+|....++
T Consensus 81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~--~~~l~~l--~D~---~ifvd~~~d~~~~Rr~~Rd~~~rG 153 (210)
T PTZ00301 81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT--NAELRNE--MDC---LIFVDTPLDICLIRRAKRDMRERG 153 (210)
T ss_pred cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhC--CHHHHHh--CCE---EEEEeCChhHHHHHHHhhhHHhcC
Confidence 43 136778855521 1222222 222 689999999999999999865443
Q ss_pred CCCCChHHHHHHHHh-------hhcCCCc
Q 004319 132 LQGGKAAAVVNRMLQ-------KKELPKL 153 (761)
Q Consensus 132 ~~~~v~~~vI~r~~~-------~~e~P~~ 153 (761)
..++.++.++.. ++..|..
T Consensus 154 ---~~~e~v~~~~~~~v~~~~~~~I~p~k 179 (210)
T PTZ00301 154 ---RTFESVIEQYEATVRPMYYAYVEPSK 179 (210)
T ss_pred ---CCHHHHHHHHHHhhcccHHHHcCccc
Confidence 456666665544 3556654
No 130
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.59 E-value=1.3e-07 Score=87.62 Aligned_cols=94 Identities=27% Similarity=0.394 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c-CCCC----C--cH-H---HHHHHHHHHHH---CCCcEEEeCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-KGKS----G--TK-V---QCLTSASSALK---KGKSVFLDRC 86 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~-~~~~----~--~~-~---~~~~~~~~~L~---~g~~VIID~t 86 (761)
+|+|+|+|||||||+|+.|++.++ +.+++.|++ . .++. . .. . .....+...+. ....+|+|+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~ 78 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG--FPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS 78 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--CEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC--CeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence 689999999999999999999998 777888884 1 1111 1 11 1 12223333332 4566999994
Q ss_pred CCCHHH--HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 87 NLEREQ--RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 87 n~~~~~--R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
.. ... +..+. ..+|+++.|.+.+..|..+|.
T Consensus 79 ~~-~~~~~~~~~~--------~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 79 YE-SEMEIRLPEF--------DHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp SC-HCCHSCCHHG--------GCEEEEEEEEHHHHHHHHHHH
T ss_pred Cc-cchhhhhhcC--------CEEEEEECCCHHHHHHHHHHH
Confidence 33 211 11111 137788877776666665554
No 131
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.56 E-value=5.4e-07 Score=89.09 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----------cHH---HHHHHHHHHHHCCCcEEEeCC--
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------TKV---QCLTSASSALKKGKSVFLDRC-- 86 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----------~~~---~~~~~~~~~L~~g~~VIID~t-- 86 (761)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ .+. .....+.+.+..+. +||...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~-~vi~~ggg 80 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG--YRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPS-TVIATGGG 80 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCC-eEEECCCC
Confidence 588899999999999999999999 566888877422111 111 11122334454443 455432
Q ss_pred -CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 87 -n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+....|..+ +..+. +|||++|.+++.+|+..|..
T Consensus 81 ~vl~~~~~~~l---~~~~~---~v~l~~~~~~~~~Rl~~r~~ 116 (171)
T PRK03731 81 IILTEENRHFM---RNNGI---VIYLCAPVSVLANRLEANPE 116 (171)
T ss_pred ccCCHHHHHHH---HhCCE---EEEEECCHHHHHHHHccccc
Confidence 3344444433 33444 88999999999999988754
No 132
>PRK08233 hypothetical protein; Provisional
Probab=98.55 E-value=3.8e-07 Score=90.53 Aligned_cols=99 Identities=14% Similarity=0.263 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------CCCC---cHHHHHHHHHHHHHCC--CcE
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------GKSG---TKVQCLTSASSALKKG--KSV 81 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------~~~~---~~~~~~~~~~~~L~~g--~~V 81 (761)
+.+|++.|+|||||||+|+.|++.++.. ..+..|.++. +... ........+.+.+... ..|
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 81 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNS-KALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI 81 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCC-ceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence 4789999999999999999999988622 2233333321 1000 1112223444434333 346
Q ss_pred EEeCCCCC-HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 82 FLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 82 IID~tn~~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
|+|+.... ......+. + .+|||++|.+++++|..+|..
T Consensus 82 ivd~~~~~~~~~~~~~~-----d---~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 82 IVDYPFAYLNSEMRQFI-----D---VTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred EEeeehhhccHHHHHHc-----C---EEEEEcCCHHHHHHHHHHHHh
Confidence 66763221 11222222 2 389999999999999888864
No 133
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.55 E-value=2.4e-07 Score=88.82 Aligned_cols=94 Identities=23% Similarity=0.358 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------CCCCCcHHHHHHHHHHHHHCCCcEEEeC--C
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------KGKSGTKVQCLTSASSALKKGKSVFLDR--C 86 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------~~~~~~~~~~~~~~~~~L~~g~~VIID~--t 86 (761)
-|+++|.||+||||+|.+|++.++ +.+|+-.++ . +-...+.+..++.+...+..| +.|+|- |
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~--~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IVDyHgC 85 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTG--LEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIVDYHGC 85 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhC--CceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC-CcEEeeccc
Confidence 388999999999999999999999 444654222 1 122345566778888888774 666776 4
Q ss_pred CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
-+- -.+|.++ +|+|.+|-+++..|+..|.-+.
T Consensus 86 d~F---perwfdl--------VvVLr~~~s~LY~RL~sRgY~e 117 (176)
T KOG3347|consen 86 DFF---PERWFDL--------VVVLRTPNSVLYDRLKSRGYSE 117 (176)
T ss_pred Ccc---chhheeE--------EEEEecCchHHHHHHHHcCCCH
Confidence 443 3345555 8899999999999999998654
No 134
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.54 E-value=6.1e-07 Score=91.25 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=62.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE--------------------Eeccccc----CCCCC-------c-HHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTIN----KGKSG-------T-KVQ 66 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~--------------------I~~D~i~----~~~~~-------~-~~~ 66 (761)
+..+|+|+|++||||||+++.|+..++..+.. ++.+.+. .+... . ...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 45689999999999999999999876411111 1111110 00000 0 000
Q ss_pred HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
....+...+..|..+|+|... .....+.+. ....+.++++.++.+++.+|+.+|..
T Consensus 84 ~~~~i~~~l~~g~~vi~dl~~---~g~~~l~~~--~~~~~~I~i~~~s~~~l~~Rl~~R~~ 139 (205)
T PRK00300 84 PRSPVEEALAAGKDVLLEIDW---QGARQVKKK--MPDAVSIFILPPSLEELERRLRGRGT 139 (205)
T ss_pred cHHHHHHHHHcCCeEEEeCCH---HHHHHHHHh--CCCcEEEEEECcCHHHHHHHHHhcCC
Confidence 124567888999999999732 222223222 22234455556778999999999875
No 135
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.52 E-value=8.9e-07 Score=86.18 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=66.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC------C-----------CCcHHHHHHHHHHHHHCCCcEEEe
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------K-----------SGTKVQCLTSASSALKKGKSVFLD 84 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~------~-----------~~~~~~~~~~~~~~L~~g~~VIID 84 (761)
+|.+.|+|||||||+|+.|++.++ +.+++...++.+ . ....+..+..-+..+....++|++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVle 79 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLE 79 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEh
Confidence 688999999999999999999999 777887555321 1 011222333333444447789999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+ ....|+.. ...-..|||.+|.++..+|+.+|.+
T Consensus 80 g------rLA~Wi~k---~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 80 G------RLAGWIVR---EYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred h------hhHHHHhc---cccceEEEEeCcHHHHHHHHHHhcC
Confidence 8 44455322 2223479999999999999999986
No 136
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.51 E-value=5.6e-07 Score=91.46 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=69.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC------------------------CCcHH-----------
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK------------------------SGTKV----------- 65 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~------------------------~~~~~----------- 65 (761)
.+|.|+|++||||||+++.|.+ ++ +.+++.|.+.... ..++.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 5799999999999999999987 77 6778888772100 00110
Q ss_pred -----------HHHHHHHHHHHCC---CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319 66 -----------QCLTSASSALKKG---KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (761)
Q Consensus 66 -----------~~~~~~~~~L~~g---~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~ 131 (761)
.....+.+.+... ..+|+|..-+.......+ .+ .++++++|.++..+|+.+|.+
T Consensus 80 ~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~-----~D---~vi~V~a~~e~~~~Rl~~R~~---- 147 (194)
T PRK00081 80 ARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL-----VD---RVLVVDAPPETQLERLMARDG---- 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh-----CC---eEEEEECCHHHHHHHHHHcCC----
Confidence 0112223333322 568888855544322222 22 278999999999999999864
Q ss_pred CCCCChHHHHHHHHhhh
Q 004319 132 LQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 132 ~~~~v~~~vI~r~~~~~ 148 (761)
...++...++..++
T Consensus 148 ---~s~e~~~~ri~~Q~ 161 (194)
T PRK00081 148 ---LSEEEAEAIIASQM 161 (194)
T ss_pred ---CCHHHHHHHHHHhC
Confidence 23345555555443
No 137
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=98.50 E-value=3.3e-08 Score=99.22 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=68.8
Q ss_pred CcccccccccccccccccccccccccccC---CCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHH
Q 004319 230 QITEEKNSCLEGQEITSLLSDAAGEEVKG---TENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (761)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~ 306 (761)
-|.|+++++.+++|.+.|-|.. +...+ +..-.+-|+.--. ...++|||||+||+|+||||++.||++++++|+.
T Consensus 87 ~t~~~~Lpak~vIHtvgP~~~~--d~~~~~~~L~~~~rs~L~la~-~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~ 163 (200)
T KOG2633|consen 87 STGGYGLPAKRVIHTVGPRWKE--DKLQECYFLHSCYRSCLDLAI-EKLLSSIAFPKISSGRVGYPWEDAAKIELETIRV 163 (200)
T ss_pred ecCCCCCceeEEEEecCchhhc--cchHHHHHHHHHHHHHHHHHH-HhccceeeeeeeeccccCccHHHHHHHHHHHHHH
Confidence 4567899999999999999986 22222 2233344454323 3789999999999999999999999999999999
Q ss_pred HHHhcCCeEE---EEeccccc
Q 004319 307 FVNKLGNARL---VLVDLTQG 324 (761)
Q Consensus 307 f~~~~~~i~~---v~vD~~~~ 324 (761)
||+++.+..+ .+.|++..
T Consensus 164 ~f~~~~d~~l~~~~f~~~d~e 184 (200)
T KOG2633|consen 164 FFVKNKDSSLKTVPFLDYDSE 184 (200)
T ss_pred HHhhCCCceEEEEEEeccCCc
Confidence 9999876433 33455443
No 138
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.50 E-value=2.2e-06 Score=85.85 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec-------cccc----CC---CCCcHHH-H---------H-HHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN----KG---KSGTKVQ-C---------L-TSASS 73 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~-------D~i~----~~---~~~~~~~-~---------~-~~~~~ 73 (761)
+|++.|++||||||+++.|++.+ +..+..+.. +.++ .. ....... + . ..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 81 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKP 81 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999887 333332321 1111 11 0111111 0 1 22334
Q ss_pred HHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHH
Q 004319 74 ALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (761)
Q Consensus 74 ~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~v 140 (761)
.+..|..||+|...+.. .+...+..+ ........+|+|++|.+++.+|+.+|...... .....+.
T Consensus 82 ~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~~ 159 (200)
T cd01672 82 ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--EQEGLEF 159 (200)
T ss_pred HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--hhhhHHH
Confidence 56688899999644332 222233333 32223446899999999999999999763210 0122333
Q ss_pred HHHHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319 141 VNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 141 I~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~ 174 (761)
..++...++......+. .+++++....++++..
T Consensus 160 ~~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~ 192 (200)
T cd01672 160 HERVREGYLELAAQEPE-RIIVIDASQPLEEVLA 192 (200)
T ss_pred HHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence 33333333322211222 4566676655555543
No 139
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=9.8e-07 Score=90.53 Aligned_cols=122 Identities=22% Similarity=0.289 Sum_probs=80.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHHCC--
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALKKG-- 78 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~~g-- 78 (761)
++.||-+.|++||||||+|+.|...++ .....|++|++..... .+++-+.+. ...|.+|
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~-L~~L~~g~~ 85 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEH-LKDLKQGKP 85 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHH-HHHHHcCCc
Confidence 458999999999999999999999998 4456789999853211 112222222 2233333
Q ss_pred -----------------------CcEEEeCCCCCHH-HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCC
Q 004319 79 -----------------------KSVFLDRCNLERE-QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG 134 (761)
Q Consensus 79 -----------------------~~VIID~tn~~~~-~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~ 134 (761)
+.|||+|...... ..+++.++ -||+++|.++++.|...|...+++
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~--------kIfvdtd~D~RliRri~RD~~~rg--- 154 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDL--------KIFVDTDADVRLIRRIKRDVQERG--- 154 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCE--------EEEEeCCccHHHHHHHHHHHHHhC---
Confidence 2378888555544 22233333 689999999999999999876554
Q ss_pred CChHHHHHHHH-------hhhcCCC
Q 004319 135 GKAAAVVNRML-------QKKELPK 152 (761)
Q Consensus 135 ~v~~~vI~r~~-------~~~e~P~ 152 (761)
..++.++.++. .+|.+|.
T Consensus 155 ~~~e~vi~qy~~~vkp~~~~fIept 179 (218)
T COG0572 155 RDLESVIEQYVKTVRPMYEQFIEPT 179 (218)
T ss_pred CCHHHHHHHHHHhhChhhhhccCcc
Confidence 56677776654 3455555
No 140
>PRK04040 adenylate kinase; Provisional
Probab=98.49 E-value=2.2e-06 Score=86.75 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc------CCCCCcHH-----------HHHHHHH---HHHHCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSGTKV-----------QCLTSAS---SALKKGK 79 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~------~~~~~~~~-----------~~~~~~~---~~L~~g~ 79 (761)
+.+|+++|.|||||||+++.|.+.++..+.+++.+++. .+...+++ +....+. +.+..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 57899999999999999999999983225667766551 22221111 1112222 2344567
Q ss_pred cEEEeCC--------CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 80 SVFLDRC--------NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 80 ~VIID~t--------n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
.+|+|+- .+..-.+.-+.++ . +-.+|+|++|+++..+|..+
T Consensus 82 ~~~~~~h~~i~~~~g~~~~~~~~~~~~l-~---pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 82 PVIVDTHATIKTPAGYLPGLPEWVLEEL-N---PDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CEEEeeeeeeccCCCCcCCCCHHHHhhc-C---CCEEEEEeCCHHHHHHHHhc
Confidence 7999992 1211122222222 1 12467888888888777664
No 141
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.47 E-value=6.5e-07 Score=91.13 Aligned_cols=111 Identities=18% Similarity=0.096 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC----------------------C---cH-----------
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------------------G---TK----------- 64 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~----------------------~---~~----------- 64 (761)
.+|.|+|++||||||+++.+.+.+| +.+++.|.+..... + ++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g--~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~ 79 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG--IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDP 79 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC--CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCH
Confidence 4799999999999999999998878 67788887731100 1 00
Q ss_pred ---HH--------HHHHHHHHHHC---CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319 65 ---VQ--------CLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (761)
Q Consensus 65 ---~~--------~~~~~~~~L~~---g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~ 130 (761)
.. ..+.+.+.+.. ...+|+|..-+.......+ .+. ++++++|.+++.+|+.+|..
T Consensus 80 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~-----~D~---ii~V~a~~e~r~~Rl~~R~g--- 148 (195)
T PRK14730 80 EERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDL-----CSE---IWVVDCSPEQQLQRLIKRDG--- 148 (195)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhC-----CCE---EEEEECCHHHHHHHHHHcCC---
Confidence 00 01122222221 2456777755543322222 122 78899999999999999964
Q ss_pred CCCCCChHHHHHHHHhhh
Q 004319 131 NLQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 131 ~~~~~v~~~vI~r~~~~~ 148 (761)
...+++..++..++
T Consensus 149 ----~s~e~~~~ri~~Q~ 162 (195)
T PRK14730 149 ----LTEEEAEARINAQW 162 (195)
T ss_pred ----CCHHHHHHHHHhCC
Confidence 23456666665544
No 142
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.47 E-value=8.9e-07 Score=87.21 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=74.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc------------CCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------------KGKSGTKVQCLTSASSALKKGKSVFLDRCNLE 89 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~------------~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~ 89 (761)
+|+++|.||.||||+|++|. .++..+.+++ |.+. +....+.+.....+...+ ...+.|+|+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~-el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~---- 74 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN-ELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDS---- 74 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH-HHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeec----
Confidence 68999999999999999999 8885554444 2221 111222333333333333 456889998
Q ss_pred HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319 90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (761)
Q Consensus 90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~ 165 (761)
.-..++ ...+. +|+|.++++.+.+|+..|+..+.. +.+.+-..++.-.. -...|.|+.++.++.
T Consensus 75 --H~~hl~--~~~dl---VvVLR~~p~~L~~RLk~RGy~~eK----I~ENveAEi~~vi~-~EA~E~~~~v~evdt 138 (180)
T COG1936 75 --HLSHLL--PDCDL---VVVLRADPEVLYERLKGRGYSEEK----ILENVEAEILDVIL-IEAVERFEAVIEVDT 138 (180)
T ss_pred --hhhhcC--CCCCE---EEEEcCCHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHHH-HHHHHhcCceEEEEC
Confidence 212121 22233 889999999999999999875432 22222222322211 112455677777764
No 143
>PRK04182 cytidylate kinase; Provisional
Probab=98.46 E-value=2.8e-06 Score=84.01 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC-----CCCC----------c-HHHHHHHHHHHHH-CCCcEEE
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-----GKSG----------T-KVQCLTSASSALK-KGKSVFL 83 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~-----~~~~----------~-~~~~~~~~~~~L~-~g~~VII 83 (761)
+|+|+|.|||||||+|+.|++.++ +.+++.|++ +. +... . ....+......+. .+..+|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg--~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG--LKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence 699999999999999999999998 566775443 11 1100 0 0111222222343 5678899
Q ss_pred eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
|+.... + + +.. ....|+|++|.+++.+|+..|..
T Consensus 80 ~g~~~~------~--~~~~~--~~~~V~l~a~~e~~~~Rl~~r~~ 114 (180)
T PRK04182 80 EGRLAG------W--MAKDY--ADLKIWLKAPLEVRAERIAEREG 114 (180)
T ss_pred EEeecc------e--EecCC--CCEEEEEECCHHHHHHHHHhccC
Confidence 883211 1 1 211 23578999999999999998864
No 144
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.44 E-value=3.6e-06 Score=84.49 Aligned_cols=134 Identities=17% Similarity=0.336 Sum_probs=79.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE-E--------------------eccccc----CCC-----------CCc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTIN----KGK-----------SGT 63 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~-I--------------------~~D~i~----~~~-----------~~~ 63 (761)
+.+|+|+||+||||||++++|.+.++..+.. + +.+.+. .+. +++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 4689999999999999999999987643321 1 111110 011 111
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 64 KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 64 ~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
....+...+..|+.+|+|. ....+..++..+..+.+||+.+| .+.+.+|+.+|... ..+++..
T Consensus 82 ---~~~~i~~~~~~gk~~il~~------~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~-------~~~~i~~ 145 (183)
T PF00625_consen 82 ---SKSAIDKVLEEGKHCILDV------DPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE-------SEEEIEE 145 (183)
T ss_dssp ---EHHHHHHHHHTTTEEEEEE------THHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC-------HHHHHHH
T ss_pred ---ccchhhHhhhcCCcEEEEc------cHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccc-------cHHHHHH
Confidence 1256678889999999997 34445555223667778888765 68888888777642 2334443
Q ss_pred HHHhhhcCCCccCCceEEEEcCChhhH
Q 004319 143 RMLQKKELPKLSEGFSRITLCQNENDV 169 (761)
Q Consensus 143 r~~~~~e~P~~~EgFd~V~vv~~~~ei 169 (761)
++...-..-.....||.|+..++.++.
T Consensus 146 r~~~~~~~~~~~~~fd~vi~n~~le~~ 172 (183)
T PF00625_consen 146 RLERAEKEFEHYNEFDYVIVNDDLEEA 172 (183)
T ss_dssp HHHHHHHHHGGGGGSSEEEECSSHHHH
T ss_pred HHHHHHHHHhHhhcCCEEEECcCHHHH
Confidence 433221111111129998876654443
No 145
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.43 E-value=3e-06 Score=86.82 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=69.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEecccccCCC------------C---C--cHHHHHHHHHHHHHCC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGK------------S---G--TKVQCLTSASSALKKG 78 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~D~i~~~~------------~---~--~~~~~~~~~~~~L~~g 78 (761)
+++..+|.|+|++|||||||++.|...++. ...++++|.+.... + . ....+.+ ..+.+..|
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~l~~g 81 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYE-HLKNLKNG 81 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHH-HHHHHHCC
Confidence 345689999999999999999999987652 45667777753110 0 0 1111122 22233333
Q ss_pred -------------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319 79 -------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (761)
Q Consensus 79 -------------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~ 133 (761)
..||+|+...... ..+... .+ ..||+++|.++++.|..+|....++
T Consensus 82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~~--~d---~~I~v~~~~~~~l~R~~~R~~~~rg-- 152 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRDL--MD---LKIFVDTPLDIRLIRRIERDINERG-- 152 (207)
T ss_pred CCEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHHh--CC---EEEEEECChhHHHHHHHHHHHHhhC--
Confidence 2367776444211 112111 22 3789999999999999999754322
Q ss_pred CCChHHHHHHH
Q 004319 134 GGKAAAVVNRM 144 (761)
Q Consensus 134 ~~v~~~vI~r~ 144 (761)
...+.++.++
T Consensus 153 -~~~~~~~~~~ 162 (207)
T TIGR00235 153 -RSLDSVIDQY 162 (207)
T ss_pred -CCHHHHHHHH
Confidence 3445455443
No 146
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.43 E-value=8.9e-07 Score=86.99 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=61.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC------CCCC-----------cHHHHH-HHHHHHHHCCCcEEE
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSG-----------TKVQCL-TSASSALKKGKSVFL 83 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~------~~~~-----------~~~~~~-~~~~~~L~~g~~VII 83 (761)
+|+|.|.+||||||+|+.|++.++ +.+++.|++.. +... .....+ ..+......+..+||
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS--LKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVL 79 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEE
Confidence 799999999999999999999998 66688755421 1100 001112 222333335678999
Q ss_pred eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
|+.... |......+ ..|++++|.+++.+|+.+|..
T Consensus 80 ~g~~~~------~~~~~~~d---~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 80 ESRLAG------WIVREYAD---VKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred Eecccc------eeecCCcC---EEEEEECCHHHHHHHHHHccC
Confidence 984321 11001122 378999999999999999975
No 147
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.43 E-value=9e-07 Score=89.51 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
||.+.|.|||||||+|+.|++.++ ...+|+.|++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~-~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP-NCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CCeEEcccccc
Confidence 588999999999999999999874 26678888774
No 148
>PRK07667 uridine kinase; Provisional
Probab=98.42 E-value=2e-06 Score=87.26 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=67.5
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC--------CCC---------cHHHHHHHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG--------KSG---------TKVQCLTSASSAL 75 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~--------~~~---------~~~~~~~~~~~~L 75 (761)
-.+.+.+|.|.|+|||||||+|+.|.+.++ .+...++.|++... ... ....+...+...|
T Consensus 13 ~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L 92 (193)
T PRK07667 13 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKL 92 (193)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhh
Confidence 345668999999999999999999988764 45678888886321 110 1111112222333
Q ss_pred HCC-------------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 76 KKG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 76 ~~g-------------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+.+ ..+|+|+..+....-..+.+. .|++++|.++.++|+.+|..
T Consensus 93 ~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~--------~v~V~~~~~~~~~R~~~r~~ 161 (193)
T PRK07667 93 QNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHY--------MVYLDCPRETRFLRESEETQ 161 (193)
T ss_pred cCCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceE--------EEEEECCHHHHHHHHhcccH
Confidence 332 347788876544332233222 88999999999999998764
No 149
>PRK13975 thymidylate kinase; Provisional
Probab=98.42 E-value=3e-06 Score=85.53 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-----c----CCCCCc----------HHHHHHHHHHHHHCCCc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----N----KGKSGT----------KVQCLTSASSALKKGKS 80 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-----~----~~~~~~----------~~~~~~~~~~~L~~g~~ 80 (761)
..+|++.|++||||||+++.|++.++..+.....|.. + .+.... +.+.++.+...+.. ..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~~ 80 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-RD 80 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CE
Confidence 3689999999999999999999998843332222211 1 110110 11112233444444 67
Q ss_pred EEEeCCCCCHHHH-------HHHH-Hh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 81 VFLDRCNLEREQR-------TDFV-KL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 81 VIID~tn~~~~~R-------~~~~-~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
||.|...++..-. ..|. .+ .....+-.+|+|++|.+++.+|+..|.
T Consensus 81 vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 81 VVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred EEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 8999743321000 0111 11 111112248999999999999999886
No 150
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.42 E-value=7.2e-07 Score=89.39 Aligned_cols=110 Identities=23% Similarity=0.216 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC------------------------CcHH------------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS------------------------GTKV------------ 65 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~------------------------~~~~------------ 65 (761)
+|.|+|.|||||||+++.+.+ ++ +.+++.|.+..... ..+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 77 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG--IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC--CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence 489999999999999999988 77 66788887721100 0100
Q ss_pred ----------HHHHHHHHHHHC---CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCC
Q 004319 66 ----------QCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (761)
Q Consensus 66 ----------~~~~~~~~~L~~---g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~ 132 (761)
.....+.+.+.. ...+|+|...+.......+.+ .++++++|.++..+|+.+|..
T Consensus 78 ~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~D--------~vv~V~a~~~~ri~Rl~~Rd~----- 144 (179)
T cd02022 78 RKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVD--------RVIVVDAPPEIQIERLMKRDG----- 144 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhCC--------eEEEEECCHHHHHHHHHHcCC-----
Confidence 011222222221 245777875444332222322 278999999999999999975
Q ss_pred CCCChHHHHHHHHhhhc
Q 004319 133 QGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 133 ~~~v~~~vI~r~~~~~e 149 (761)
...+++..++..++.
T Consensus 145 --~s~~~~~~r~~~Q~~ 159 (179)
T cd02022 145 --LSEEEAEARIASQMP 159 (179)
T ss_pred --CCHHHHHHHHHhcCC
Confidence 344666666666543
No 151
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.40 E-value=1.9e-06 Score=100.76 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=75.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH------------HHHH-HHHHHHHHCCCcEEEeC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQCL-TSASSALKKGKSVFLDR 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~------------~~~~-~~~~~~L~~g~~VIID~ 85 (761)
...|+|+|.|||||||+++.|++.++ +.+++.|.+-....+ +. +++. +.+.+.+.. ...||..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~--~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-~~~VIs~ 82 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMR--LPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLED-FDGIFSL 82 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhC--CCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEC
Confidence 35799999999999999999999999 555888776322211 00 1111 223333333 3445533
Q ss_pred ---CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 004319 86 ---CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 86 ---tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~ 148 (761)
.....+.|..+.++ +..+. +|||+.|.+++.+|+..+..++ .+.. .+.+.+.+++++.
T Consensus 83 GGG~v~~~~n~~~L~~~~~~~g~---vv~L~~~~~~l~~Rl~~~~~RP-ll~~-~~~~~~~~l~~~R 144 (542)
T PRK14021 83 GGGAPMTPSTQHALASYIAHGGR---VVYLDADPKEAMERANRGGGRP-MLNG-DANKRWKKLFKQR 144 (542)
T ss_pred CCchhCCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHhCCCCCC-CCCC-CcHHHHHHHHHHH
Confidence 45566777776665 66665 8999999999999987554332 1211 2344555555543
No 152
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.39 E-value=2.2e-06 Score=86.36 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcHH-----------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTKV----------- 65 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~~----------- 65 (761)
+|.|+|.+||||||+++.|.+..+ +.+++.|.+.. |.. .+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~i-dr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH--FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGEL-DRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC--CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCC-CHHHHHHHHhCCHH
Confidence 489999999999999999998765 67788887721 110 000
Q ss_pred -----------HHHHHHHHHH----HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319 66 -----------QCLTSASSAL----KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (761)
Q Consensus 66 -----------~~~~~~~~~L----~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~ 130 (761)
.....+.+.+ ..|..+|++...+.......+ .+ .++++++|.+++.+|+.+|..
T Consensus 78 ~~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-----~D---~vv~V~~~~~~~~~Rl~~R~~--- 146 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-----CD---RVIVVDVSPQLQLERLMQRDN--- 146 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-----CC---EEEEEECCHHHHHHHHHHcCC---
Confidence 0011222222 234568888755543222222 22 278899999999999999984
Q ss_pred CCCCCChHHHHHHHHhhh
Q 004319 131 NLQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 131 ~~~~~v~~~vI~r~~~~~ 148 (761)
...+++..++..+.
T Consensus 147 ----~s~~~~~~r~~~q~ 160 (188)
T TIGR00152 147 ----LTEEEVQKRLASQM 160 (188)
T ss_pred ----CCHHHHHHHHHhcC
Confidence 23456666665553
No 153
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=98.38 E-value=1.5e-07 Score=89.73 Aligned_cols=98 Identities=8% Similarity=0.022 Sum_probs=66.0
Q ss_pred CcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCCC
Q 004319 195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSS 274 (761)
Q Consensus 195 ~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (761)
...+++..+++.+++.+. .. .|... .|.++++.|.+++|.+.+..+. ......+..-++.++. .....
T Consensus 35 i~~~~G~~~~~~~~~~~~-~~--~G~~~-------~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~-~a~~~ 102 (133)
T cd03330 35 IKRAGGSVIEREAVRKAP-IP--VGEAV-------ITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALA-LADEL 102 (133)
T ss_pred HHHHhCHHHHHHHHHcCC-CC--CCeEE-------EEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHH-HHHHc
Confidence 344455555665555321 11 23332 4678899999999999876443 2222223344445554 44457
Q ss_pred CCCeeecccccccCCCCCHHHHHHHHHHHH
Q 004319 275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKV 304 (761)
Q Consensus 275 ~~~SiafPaIStg~~gfp~~~aa~i~~~~v 304 (761)
+++|||||+||||++|||+++++++++++|
T Consensus 103 ~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 103 GIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred CCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 899999999999999999999999999886
No 154
>PRK13973 thymidylate kinase; Provisional
Probab=98.37 E-value=8e-06 Score=84.21 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=67.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEe-------ccccc----C---CCCCcHH----------HH-HHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC-------QDTIN----K---GKSGTKV----------QC-LTSA 71 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~-------~D~i~----~---~~~~~~~----------~~-~~~~ 71 (761)
..+|++-|++||||||+++.|.+.+ +..+..+. .+.++ . ....... +. ...+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i 82 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI 82 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999887 43333331 12221 1 1111111 11 1346
Q ss_pred HHHHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 72 SSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..+|..|..||.|...++. .+...+... ...-.+-.+++|++|.+++.+|+.+|..
T Consensus 83 ~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 83 RPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 6788899999999965322 122222222 1112234689999999999999999964
No 155
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.37 E-value=2.3e-06 Score=93.32 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=71.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCc-H------------HHH-HHHHHHHHHCCCcEEE
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-K------------VQC-LTSASSALKKGKSVFL 83 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~-~------------~~~-~~~~~~~L~~g~~VII 83 (761)
.+...|+|+|+|||||||+++.|++.++.+ +++.|.......+. . ... .+.+.+.+.....+||
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~--~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI 208 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVP--FVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVL 208 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCC--EEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 455689999999999999999999999944 46766553211110 0 011 1233333443444555
Q ss_pred eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e 149 (761)
.........-..+..+... ..+|||++|.+++.+|+.+|.............+.+..++....
T Consensus 209 ~~Ggg~v~~~~~~~~l~~~---~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~ 271 (309)
T PRK08154 209 ATGGGIVSEPATFDLLLSH---CYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASRE 271 (309)
T ss_pred ECCCchhCCHHHHHHHHhC---CEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 5433221111112123122 34899999999999999988643211112233455655555444
No 156
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.37 E-value=2.4e-06 Score=86.64 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC---C----eEEEecccccC----------C--C-------CCcHHHHHHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSAR---P----WARICQDTINK----------G--K-------SGTKVQCLTSASSAL 75 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~---~----~~~I~~D~i~~----------~--~-------~~~~~~~~~~~~~~L 75 (761)
||.|+|+|||||||||++|...++. . ...++.|.+.. + . ....+.+ ......|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l-~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLL-KEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHH-HHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHH-HHHHHHH
Confidence 6899999999999999999998872 2 34566665421 0 0 1122233 3334456
Q ss_pred HCCC-------------------------cEEEeCCCCC-HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 76 KKGK-------------------------SVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 76 ~~g~-------------------------~VIID~tn~~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
+.|+ .+|+++...- ...-..+.++ .||++++.++++.|...|....
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~--------~ifld~~~~~~l~Rri~RD~~~ 151 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDL--------KIFLDADEDLRLERRIQRDVAE 151 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SE--------EEEEEE-HHHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccccee--------EEEecccHHHHHHHHhhhhccc
Confidence 5543 3788886532 2222233223 7899999999999999998654
Q ss_pred CCCCCCChHHHHHHHH------hhhcCCCccCCceEEE
Q 004319 130 GNLQGGKAAAVVNRML------QKKELPKLSEGFSRIT 161 (761)
Q Consensus 130 ~~~~~~v~~~vI~r~~------~~~e~P~~~EgFd~V~ 161 (761)
++ ..+++++.++. .++..|.... .|-|+
T Consensus 152 rG---~~~~~~~~~~~~~~~~~~~~I~p~~~~-ADivi 185 (194)
T PF00485_consen 152 RG---RSPEEVIAQYERVRPGYERYIEPQKER-ADIVI 185 (194)
T ss_dssp S----S-HHHHHHHHHTHHHHHHHCTGGGGGG--SEEE
T ss_pred cC---CcceeEEEEeecCChhhhhheeccccc-cEEEE
Confidence 43 45677766654 2355665333 34443
No 157
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.35 E-value=7.6e-06 Score=82.89 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=79.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec--c---------ccc--CCCCCcHHH-----------HHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--D---------TIN--KGKSGTKVQ-----------CLTSAS 72 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~--D---------~i~--~~~~~~~~~-----------~~~~~~ 72 (761)
..+|++.|++||||||+++.|.+.+. ..+..... + .+. ......+.. ....+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 82 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK 82 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998763 11221111 1 001 111111111 112344
Q ss_pred HHHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHH
Q 004319 73 SALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139 (761)
Q Consensus 73 ~~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~ 139 (761)
..+..|..||+|...++. .+-..+... .....+-.+|+|++|.+++.+|+.+|..... ....+.+
T Consensus 83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~--~~~~~~~ 160 (205)
T PRK00698 83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDR--IEQEGLD 160 (205)
T ss_pred HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch--hhhhhHH
Confidence 556788999999643332 111122222 2112234689999999999999999974210 0011223
Q ss_pred HHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319 140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 140 vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~ 174 (761)
...++...++.......+ .++++++..+++++..
T Consensus 161 ~~~~~~~~y~~~~~~~~~-~~~~Id~~~~~e~v~~ 194 (205)
T PRK00698 161 FFERVREGYLELAEKEPE-RIVVIDASQSLEEVHE 194 (205)
T ss_pred HHHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence 344444333322212222 4566666555554433
No 158
>PLN02348 phosphoribulokinase
Probab=98.34 E-value=3.8e-06 Score=93.29 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=76.2
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC------------------CeEEEecccccC---------CC------CC
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR------------------PWARICQDTINK---------GK------SG 62 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~------------------~~~~I~~D~i~~---------~~------~~ 62 (761)
....|.||-|.|.|||||||||++|...++. ....|+.|++.. +. ..
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~ 124 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN 124 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccc
Confidence 3457889999999999999999999988752 356789988841 10 01
Q ss_pred cHHHHHHHHHHHHHCCC------------------------cEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHH
Q 004319 63 TKVQCLTSASSALKKGK------------------------SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLC 118 (761)
Q Consensus 63 ~~~~~~~~~~~~L~~g~------------------------~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~ 118 (761)
+.+ .+......|+.|+ .+||++....... .+.++ .+ ..||+++|.++.
T Consensus 125 dfD-ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr~l--~D---~~IyVd~~~dvr 196 (395)
T PLN02348 125 NFD-LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVRDL--LD---FSIYLDISDDVK 196 (395)
T ss_pred cHH-HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--ccccc--Cc---EEEEEECCHHHH
Confidence 122 2334445666653 3677774332211 11111 22 278999999999
Q ss_pred HHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319 119 ISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 119 ~~R~~~R~~~~~~~~~~v~~~vI~r~~~ 146 (761)
+.|..+|....++ ...+++..++.+
T Consensus 197 l~RRI~RD~~eRG---~S~EeV~~~i~a 221 (395)
T PLN02348 197 FAWKIQRDMAERG---HSLESIKASIEA 221 (395)
T ss_pred HHHHHHhhHhhcC---CCHHHHHHHHHh
Confidence 9888888754333 455666666543
No 159
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=98.32 E-value=2.7e-06 Score=83.47 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=80.6
Q ss_pred EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCCEEEecCCCCCCCC
Q 004319 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLPSTSPLC 421 (761)
Q Consensus 344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~--~~~~~G~avvT~l~~~~~~~ 421 (761)
-|++++|||++.... ..++|||++|..+. +|+||+.+|.++.+ ++.++.++.. +..+.|++.+.+. .
T Consensus 2 ~i~~v~GDl~~~~~~---~~~~i~h~~N~~g~-mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~------~ 70 (154)
T PHA02595 2 IVDYIKGDIVALFLQ---GKGNIAHGCNCFHT-MGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEK------Y 70 (154)
T ss_pred eEEEECCcccccccC---CCceEEEeeCCCCc-CChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEe------e
Confidence 367899999887321 25799999999999 99999999999995 6666655542 4567899976431 1
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH------HHhhccccc
Q 004319 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF------LSIVRSQEK 476 (761)
Q Consensus 422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a------~siaf~~~~ 476 (761)
++.+-++|+|..+- |++..+ -..+.|++|++++.+.+ .||++|.++
T Consensus 71 ~~~~~~~I~nl~tq-~~~~~~--------~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG 122 (154)
T PHA02595 71 VGGHKAYCFNLYTQ-FDPGPN--------LEYSALMNCFEELNEVFEGTLFKPTIYIPRIG 122 (154)
T ss_pred ccCCCEEEEEEecc-CCCCCC--------CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCC
Confidence 23344899999775 755432 23567888888887775 467777553
No 160
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.32 E-value=1.3e-06 Score=89.07 Aligned_cols=109 Identities=22% Similarity=0.203 Sum_probs=68.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC--------------C--------C--cH-------------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------S--------G--TK------------- 64 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~--------------~--------~--~~------------- 64 (761)
+|.|+|.+||||||+++.+. ..+ +..++.|.+.... + + ++
T Consensus 1 ~i~itG~~gsGKst~~~~l~-~~g--~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~ 77 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILE-ELG--AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK 77 (196)
T ss_pred CEEEECCCCccHHHHHHHHH-HCC--CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence 57899999999999999775 456 6778888772100 0 0 00
Q ss_pred ---------HHHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCC
Q 004319 65 ---------VQCLTSASSAL---KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (761)
Q Consensus 65 ---------~~~~~~~~~~L---~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~ 132 (761)
....+.+.+.+ ..+..+|+|..-+.......+.+. ++++++|.++..+|+.+|..
T Consensus 78 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D~--------vi~V~a~~e~r~~RL~~R~g----- 144 (196)
T PRK14732 78 LKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCDA--------TVTVDSDPEESILRTISRDG----- 144 (196)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCCE--------EEEEECCHHHHHHHHHHcCC-----
Confidence 00111122222 234567888866655433333222 88999999999999999964
Q ss_pred CCCChHHHHHHHHhhh
Q 004319 133 QGGKAAAVVNRMLQKK 148 (761)
Q Consensus 133 ~~~v~~~vI~r~~~~~ 148 (761)
...+++..++..++
T Consensus 145 --~s~e~a~~ri~~Q~ 158 (196)
T PRK14732 145 --MKKEDVLARIASQL 158 (196)
T ss_pred --CCHHHHHHHHHHcC
Confidence 24466666666654
No 161
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.31 E-value=3.4e-06 Score=84.69 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC---------CC-----cHHHHHHHHHHHHHCC------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---------SG-----TKVQCLTSASSALKKG------ 78 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~---------~~-----~~~~~~~~~~~~L~~g------ 78 (761)
+|.|.|+|||||||||+.|.+.+. .....|+.|.+.... .. ..+.+.+.+ ..++.|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l-~~l~~~~~~~~p 79 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNL-HDLLNGKEVELP 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHH-HHHHCCCeeecc
Confidence 589999999999999999998863 457789998886411 11 112222222 223333
Q ss_pred --------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHH-HHHHHHhcccccCCCCCCCh
Q 004319 79 --------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVKRIEHEGNLQGGKA 137 (761)
Q Consensus 79 --------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~-~~~R~~~R~~~~~~~~~~v~ 137 (761)
..+|+|+.......-..+.+ ..||+++|.++ ++.|-..|....++ ...
T Consensus 80 ~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d--------~~I~vd~~~~~~rl~rri~RD~~~rg---~~~ 148 (179)
T cd02028 80 IYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLD--------IRVAVSGGVHLNRLLRRVVRDIQFRG---YSA 148 (179)
T ss_pred cceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcC--------EEEEEeCCccHHHHHHHHHHhHHhhC---CCH
Confidence 23788886654332222322 27899999998 88888888765443 556
Q ss_pred HHHHHH
Q 004319 138 AAVVNR 143 (761)
Q Consensus 138 ~~vI~r 143 (761)
++++.+
T Consensus 149 ~~~i~~ 154 (179)
T cd02028 149 ELTILM 154 (179)
T ss_pred HHHhhh
Confidence 666666
No 162
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.29 E-value=1.5e-05 Score=80.28 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=62.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEec-------cccc----CCC--CCc---H--------H-HHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-------DTIN----KGK--SGT---K--------V-QCLTSAS 72 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~-------D~i~----~~~--~~~---~--------~-~~~~~~~ 72 (761)
.+|++.|++||||||+++.|++.++. .+.++.. +.++ .+. ..+ . . .....+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~ 83 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIK 83 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988752 2222211 1111 010 011 0 0 1113345
Q ss_pred HHHHCCCcEEEeCCCCCHH---------HHHHHHHh-CCC-C-ceEEEEEEeCCHHHHHHHHHhccc
Q 004319 73 SALKKGKSVFLDRCNLERE---------QRTDFVKL-GGP-E-VDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 73 ~~L~~g~~VIID~tn~~~~---------~R~~~~~l-~~~-~-~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..+..|..||+|...++.. ....+..+ ... . ..-.+|+|++|.+++.+|+..|..
T Consensus 84 ~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 84 PALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 5667888899997433321 11111112 111 1 133589999999999999999865
No 163
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.29 E-value=4.4e-06 Score=84.23 Aligned_cols=104 Identities=19% Similarity=0.273 Sum_probs=61.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc----cc--------CCC--CCcHHHH------HHHHHHH---HHCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----IN--------KGK--SGTKVQC------LTSASSA---LKKG 78 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~----i~--------~~~--~~~~~~~------~~~~~~~---L~~g 78 (761)
+|++.|++||||||+++.|.+.++ +..+..+. .. .+. .....+. .+...+. +..+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~--~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~ 78 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG--YEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG 78 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 489999999999999999998776 32232221 11 110 0000110 1122222 3478
Q ss_pred CcEEEeCCCCCHH---------------HHH---HHHHh--CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 79 KSVFLDRCNLERE---------------QRT---DFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 79 ~~VIID~tn~~~~---------------~R~---~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..||+|...++.. ... .+.+. .....+-.+|+|++|.++|.+|+.+|.+
T Consensus 79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 8999999655421 111 12222 2223345689999999999999999875
No 164
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.28 E-value=1.3e-05 Score=86.30 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHH-HHCCCcEEEeCCCCC--HHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA-LKKGKSVFLDRCNLE--REQRTD 95 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~-L~~g~~VIID~tn~~--~~~R~~ 95 (761)
...+|+|+|++||||||+++.|. ..| +..++ .+. ..-...+.+.+... ....-.+++|..+.. ...+..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g--~~~~d--~~~---~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~ 76 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLG--YYCVD--NLP---PSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEA 76 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcC--CeEEC--CcC---HHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHH
Confidence 44689999999999999999996 445 43332 221 00111222222211 112235888997653 234444
Q ss_pred HHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 96 FVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 96 ~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
+..++..+..+.+|||+++.+++.+|+.++
T Consensus 77 ~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 77 LDELRERGIDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred HHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence 444444578888999999999999999753
No 165
>PLN02422 dephospho-CoA kinase
Probab=98.27 E-value=3.6e-06 Score=87.88 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcH------------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTK------------ 64 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~------------ 64 (761)
+|.|+|.+||||||+++.|. ++| +.+++.|.+.. |.. ++
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g--~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~i-dR~~L~~~VF~d~~ 78 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSG--IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEV-DREKLGQIVFSDPS 78 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC--CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcC-CHHHHHHHHhCCHH
Confidence 69999999999999999998 577 67799887721 110 00
Q ss_pred ----------HHHHHHHHHHH----HC-CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 65 ----------VQCLTSASSAL----KK-GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 65 ----------~~~~~~~~~~L----~~-g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
......+.+.+ .. ...+|+|..-+.......+. +. ++++++|.++..+|+.+|..
T Consensus 79 ~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~-----D~---vI~V~a~~e~ri~RL~~R~g-- 148 (232)
T PLN02422 79 KRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWT-----KP---VVVVWVDPETQLERLMARDG-- 148 (232)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhC-----CE---EEEEECCHHHHHHHHHHcCC--
Confidence 00111111111 12 24688888666544333332 22 88899999999999999974
Q ss_pred CCCCCCChHHHHHHHHhhh
Q 004319 130 GNLQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 130 ~~~~~~v~~~vI~r~~~~~ 148 (761)
...+++..++..++
T Consensus 149 -----~s~eea~~Ri~~Q~ 162 (232)
T PLN02422 149 -----LSEEQARNRINAQM 162 (232)
T ss_pred -----CCHHHHHHHHHHcC
Confidence 23466666665544
No 166
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.27 E-value=4.7e-06 Score=85.48 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=77.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----------------------cH-----------
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------------------TK----------- 64 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----------------------~~----------- 64 (761)
..|.+|.|+|.+||||||+++.+.+.++ +.+++.|.+...... ++
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg--~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN--LNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESK 81 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC--CeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCH
Confidence 3567899999999999999999998888 556887776211100 00
Q ss_pred -----------HHHHHHHHHHHHC--CCcEEEeCCCCCHHHH--HHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 65 -----------VQCLTSASSALKK--GKSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 65 -----------~~~~~~~~~~L~~--g~~VIID~tn~~~~~R--~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
....+.+.+.+.. ...+|+|..-+..... ..+.+ .++++.+|.++..+|+.+|..
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D--------~vi~V~a~~e~ri~Rl~~Rd~-- 151 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLK--------KVIVIKADLETRIRRLMERDG-- 151 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCC--------EEEEEECCHHHHHHHHHHcCC--
Confidence 0011222333332 2357788855533211 11211 178889999999999999975
Q ss_pred CCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319 130 GNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (761)
Q Consensus 130 ~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv 163 (761)
...+++..++..++......+--|.|+..
T Consensus 152 -----~s~~~a~~ri~~Q~~~eek~~~aD~VI~N 180 (204)
T PRK14733 152 -----KNRQQAVAFINLQISDKEREKIADFVIDN 180 (204)
T ss_pred -----CCHHHHHHHHHhCCCHHHHHHhCCEEEEC
Confidence 23466666666654433333434444443
No 167
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.26 E-value=8.1e-06 Score=97.85 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=80.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC----------CCCcHH---HHH----HHHHHHH-HC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG----------KSGTKV---QCL----TSASSAL-KK 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~----------~~~~~~---~~~----~~~~~~L-~~ 77 (761)
...+++|+|+||+||||+|++|.+.++ ....+++.|.++.. +..... ++. ..+...+ ..
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~ 293 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKT 293 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346899999999999999999998875 33444555544311 111111 111 1122222 35
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCCCc----eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 004319 78 GKSVFLDRCNLEREQRTDFVKL-GGPEV----DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l-~~~~~----~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~ 148 (761)
|..+|+|++|.....|..+++. ++.+. .+.+|..-++.+...+|+..|.... .++.+++.+.++++.+
T Consensus 294 GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~---~~~~~e~~~~~~~~~~ 366 (664)
T PTZ00322 294 DGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEM---FPGAPEDFVDRYYEVI 366 (664)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 8899999999999999888777 65553 4555555566666678777775432 1235667777766654
No 168
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.25 E-value=1.7e-05 Score=80.45 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEeccccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTIN 57 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~ 57 (761)
+|.|+|++||||||+++.|...++ ....+++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 588999999999999999988763 346678888764
No 169
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.24 E-value=5.5e-06 Score=79.56 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=72.2
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC-------cHHHHH----HHHHHHHHCCCcE
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG-------TKVQCL----TSASSALKKGKSV 81 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~-------~~~~~~----~~~~~~L~~g~~V 81 (761)
..++-++|+|.|++||||||+|=+|.+.+- ...-+++.|.++.|... ++.+.+ +.+.-....|-..
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic 106 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC 106 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence 345568999999999999999999877653 33446788888755422 222222 2223333444445
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|..-...++.+|...+.+ .+. .+.-||+++|.++|.+|-
T Consensus 107 iaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 107 IASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD 146 (207)
T ss_pred eehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence 555566777888888888 443 577899999999998874
No 170
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.23 E-value=1.7e-05 Score=82.15 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe-------c-------cc-------c---c-CCC----CCcHHH------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC-------Q-------DT-------I---N-KGK----SGTKVQ------ 66 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~-------~-------D~-------i---~-~~~----~~~~~~------ 66 (761)
+|++-|.-||||||+++.|++.++.....-. . +. + . +.. .....+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 5889999999999999999988762111000 0 00 1 1 111 111111
Q ss_pred ----HHHHHHHHHHCCCcEEEeCCCCCH---------------HHHHHHHHh-----CCCCceEEEEEEeCCHHHHHHHH
Q 004319 67 ----CLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKL-----GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 67 ----~~~~~~~~L~~g~~VIID~tn~~~---------------~~R~~~~~l-----~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
..+.+...+..|..||+|+..++. ..-..+..+ .....+-.+|+|++|.+.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 112233345678899999974332 111111111 11112336899999999999999
Q ss_pred HhcccccCCCCCCChHH---HHHHHHhhhcCCCccCCceEEEEcCCh--hhHHHHHHHhh
Q 004319 123 VKRIEHEGNLQGGKAAA---VVNRMLQKKELPKLSEGFSRITLCQNE--NDVQAALDTYS 177 (761)
Q Consensus 123 ~~R~~~~~~~~~~v~~~---vI~r~~~~~e~P~~~EgFd~V~vv~~~--~ei~~~l~~~~ 177 (761)
.+|+.... .....+ .+...+..+-.+...+ ...+++++.. +++++++....
T Consensus 161 ~~R~~~~e---~~~~~~yl~~l~~~y~~~~~~~~~~-~~~~i~id~~~~~~~e~i~~~I~ 216 (219)
T cd02030 161 KKRGDPHE---MKVTSAYLQDIENAYKKTFLPEISE-HSEVLQYDWTEAGDTEKVVEDIE 216 (219)
T ss_pred HHcCCchh---hcccHHHHHHHHHHHHHHHHHhhcc-CCCEEEEeCCChhhHHHHHHHHH
Confidence 99875321 123333 3333343332222222 2467777765 77777666543
No 171
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.23 E-value=1.4e-05 Score=82.26 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=28.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.+.+|.|+|.+||||||+++.|.. ++ +..++.|.+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g--~~v~d~D~i 38 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MG--CELFEADRV 38 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CC--CeEEeccHH
Confidence 467899999999999999999985 66 666777744
No 172
>PRK12338 hypothetical protein; Provisional
Probab=98.23 E-value=7.8e-06 Score=88.85 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=73.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE-ecccccCC-------CC------C---cH-----------------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-CQDTINKG-------KS------G---TK----------------- 64 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I-~~D~i~~~-------~~------~---~~----------------- 64 (761)
.|.+|++.|+|||||||+|+.|++.++ +.++ +.|.+++- +. . .|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~--~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~ 80 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN--IKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC 80 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC--CeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence 578999999999999999999999998 4445 56655310 00 0 00
Q ss_pred ----HHH-------HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 65 ----VQC-------LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 65 ----~~~-------~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.++ ...+.+++..|.++|||+..+......... ......+.++++..+.+..++|...|..
T Consensus 81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~--~~~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ--FEENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh--hcccCceEEEEEECCHHHHHHHHHHhhh
Confidence 011 134556678899999999999876655321 1122356677777889999999999875
No 173
>PLN02924 thymidylate kinase
Probab=98.22 E-value=2.1e-05 Score=81.74 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=66.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec-c--c-----cc----CCC-CCcH----------HHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-D--T-----IN----KGK-SGTK----------VQCLTS 70 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~-D--~-----i~----~~~-~~~~----------~~~~~~ 70 (761)
..+..+|++.|+.||||||+++.|.+.+. .....+.. + . ++ ++. ...+ .+....
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~ 92 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL 92 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999998875 22222210 0 0 11 111 1111 112245
Q ss_pred HHHHHHCCCcEEEeCCCCCHHH-------HHHHHH-h-CCCCceEEEEEEeCCHHHHHHHHH
Q 004319 71 ASSALKKGKSVFLDRCNLEREQ-------RTDFVK-L-GGPEVDVHAVVLDLPAKLCISRSV 123 (761)
Q Consensus 71 ~~~~L~~g~~VIID~tn~~~~~-------R~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~R~~ 123 (761)
+..+|..|..||.|...++.-. ...|+. + ...-.+=.+|+|++|.+++.+|..
T Consensus 93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 6778889999999997764311 112333 2 222223468999999999999964
No 174
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.18 E-value=7.9e-06 Score=83.56 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.+|.|+|.+||||||+++.|.. +| +.+++.|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g--~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG--FLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC--CeEEeCcHH
Confidence 3699999999999999999986 67 778998865
No 175
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.18 E-value=2e-05 Score=89.20 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=75.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------C-------------------CCC-----cH-
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G-------------------KSG-----TK- 64 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~-------------------~~~-----~~- 64 (761)
..|.+|+++|+||+||||+|.+|+..++..+ +++.|.+++ . ..+ ..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~-ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~ 331 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR-IVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA 331 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE-EeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence 4689999999999999999999999998322 567777632 0 000 00
Q ss_pred -------HH-------HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccc
Q 004319 65 -------VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH 128 (761)
Q Consensus 65 -------~~-------~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~ 128 (761)
.+ +...+.+.+..|.++|||+.++....+... ...+..+..+.+- -+.+...+|...|...
T Consensus 332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~---~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~ 407 (475)
T PRK12337 332 EVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHP---YQAGALVVPMLVTLPDEALHRRRFELRDRE 407 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHH---HhcCCceEEEEEEECCHHHHHHHHHHHhhh
Confidence 01 225678889999999999999999876522 2333434434444 4568888899999874
No 176
>PLN02199 shikimate kinase
Probab=98.17 E-value=1.2e-05 Score=86.26 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-CC-cH------------HHHHHHHHHHHHCCCcEEEeC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG-TK------------VQCLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-~~-~~------------~~~~~~~~~~L~~g~~VIID~ 85 (761)
..-|+|+|.+||||||+++.|++.++ +.+|+.|.+.+.. .+ +. .+....+...+.....+||..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg--~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VISt 179 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG--YTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST 179 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 34689999999999999999999999 6668888764321 11 11 112233333344444566644
Q ss_pred ---CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 86 ---tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
.......|..+ + .|. +|||++|.|.+.+|+..
T Consensus 180 GGG~V~~~~n~~~L---~-~G~---vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 180 GGGAVIRPINWKYM---H-KGI---SIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCcccCCHHHHHHH---h-CCe---EEEEECCHHHHHHHHhh
Confidence 23444444422 3 354 89999999999999985
No 177
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.16 E-value=1.8e-05 Score=85.32 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=75.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------------------CCC------CcH-------
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKS------GTK------- 64 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------------------~~~------~~~------- 64 (761)
..|.+|++.|++||||||+|.+|+..++.. .+++.|.+++ .|. ...
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~ 168 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGF 168 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence 468999999999999999999999999854 3577877751 110 000
Q ss_pred -HH-------HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhccccc
Q 004319 65 -VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE 129 (761)
Q Consensus 65 -~~-------~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~ 129 (761)
.+ ....+.+++.+|.++||+++++...+...+... ......+++. .+.+...+|...|....
T Consensus 169 ~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~---~~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 169 ERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLE---NPNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhc---CCCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 01 125667788899999999999999876654222 1223344555 45688889998888754
No 178
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.16 E-value=2.3e-06 Score=84.05 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHHHHHHHHHHCCCcEEEeC---CCCCHHH
Q 004319 29 PGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLDR---CNLEREQ 92 (761)
Q Consensus 29 PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~~~~~~~L~~g~~VIID~---tn~~~~~ 92 (761)
|||||||+++.|++.++ +.+++.|.+.....+ ....+...+.+.+......||.. +......
T Consensus 1 ~GsGKStvg~~lA~~L~--~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~ 78 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG--RPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEEN 78 (158)
T ss_dssp TTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred CCCcHHHHHHHHHHHhC--CCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence 79999999999999999 777888887422211 01122233444444444666655 5666666
Q ss_pred HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 93 R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
|.-+. ..+. +|||+.+.+.+.+|+..+..+
T Consensus 79 ~~~L~---~~g~---vI~L~~~~~~l~~Rl~~~~~R 108 (158)
T PF01202_consen 79 RELLK---ENGL---VIYLDADPEELAERLRARDNR 108 (158)
T ss_dssp HHHHH---HHSE---EEEEE--HHHHHHHHHHHCTS
T ss_pred HHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCC
Confidence 66554 2333 899999999999999887763
No 179
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.15 E-value=1.8e-05 Score=83.30 Aligned_cols=126 Identities=21% Similarity=0.172 Sum_probs=77.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcHH----------
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTKV---------- 65 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~~---------- 65 (761)
.+|.|+|..||||||+++.|.+.+| +.+|+.|.+.. |.. ++.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G--~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~i-dR~~L~~~VF~d~ 78 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH--IEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGEL-NRAELGKIIFSDA 78 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcC-CHHHHHHHHhCCH
Confidence 3789999999999999999998777 67799887721 110 010
Q ss_pred ----H--------HHHHHHHHHH-------------CC-CcEEEeCCCCCHHH-HHHHHHhCCCCceEEEEEEeCCHHHH
Q 004319 66 ----Q--------CLTSASSALK-------------KG-KSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLC 118 (761)
Q Consensus 66 ----~--------~~~~~~~~L~-------------~g-~~VIID~tn~~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~ 118 (761)
. ....+.+.+. .+ ..+|+|..-+.+.. ...+. +. ++++.+|.++.
T Consensus 79 ~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~-----D~---iv~V~a~~e~r 150 (244)
T PTZ00451 79 QARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFV-----SA---SVVVSCSEERQ 150 (244)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcC-----Ce---EEEEECCHHHH
Confidence 0 0111112221 22 36888986554432 11121 22 78889999999
Q ss_pred HHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319 119 ISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (761)
Q Consensus 119 ~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~ 164 (761)
.+|+.+|.. ...+++..|+..++..-...+..|.|+..+
T Consensus 151 i~RL~~R~g-------~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 151 IERLRKRNG-------FSKEEALQRIGSQMPLEEKRRLADYIIEND 189 (244)
T ss_pred HHHHHHcCC-------CCHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence 999999954 344666666655443222345566665554
No 180
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.14 E-value=2.4e-06 Score=79.38 Aligned_cols=95 Identities=22% Similarity=0.192 Sum_probs=55.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEe----c-------ccc--cCCCCCcH---HHHHHHHHHH---HHCCCcEEE
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC----Q-------DTI--NKGKSGTK---VQCLTSASSA---LKKGKSVFL 83 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~----~-------D~i--~~~~~~~~---~~~~~~~~~~---L~~g~~VII 83 (761)
|+|.|+|||||||+|+.|.+.++ ..+.+ . +.. ........ ......+... ...+..+|+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 78 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIII 78 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEE
Confidence 78999999999999999999853 10000 0 000 01111111 1122333332 456788999
Q ss_pred eCCCCCHHHHHHHHHhCCCCceEEE-EEEeCCHHHHHHHHHhcccc
Q 004319 84 DRCNLEREQRTDFVKLGGPEVDVHA-VVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l~~~~~~v~v-V~Ld~p~e~~~~R~~~R~~~ 128 (761)
|++..... ........ |+|++|.+++.+|+.+|...
T Consensus 79 d~~~~~~~---------~~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 79 DGILSNLE---------LERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp EESSEEEC---------ETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ecccchhc---------ccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 99544321 11122223 89999999999999999874
No 181
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.11 E-value=0.00011 Score=71.63 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=89.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCC--eE----EEec--cc-------cc---------CCC-CCcHHH------H
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WA----RICQ--DT-------IN---------KGK-SGTKVQ------C 67 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~--~~----~I~~--D~-------i~---------~~~-~~~~~~------~ 67 (761)
+-.+|+++||+|+||-|+.......+... +. +|.. |. +. +|. ...|.. +
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 45799999999999999988877666522 21 2222 11 10 010 012221 1
Q ss_pred HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319 68 LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 68 ~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~ 146 (761)
-..+-..|..|..||+.+ .|.-+-+. +.+. ...+|.+.++.+++.+|+.+|.+ +..+++..|..+
T Consensus 84 p~eId~wl~~G~vvl~Ng------SRa~Lp~arrry~-~Llvv~ita~p~VLaqRL~~RGR-------Es~eeI~aRL~R 149 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNG------SRAVLPQARRRYP-QLLVVCITASPEVLAQRLAERGR-------ESREEILARLAR 149 (192)
T ss_pred chhHHHHHhCCCEEEEec------cHhhhHHHHHhhh-cceeEEEecCHHHHHHHHHHhcc-------CCHHHHHHHHHh
Confidence 156778889999999877 34444444 3344 56788899999999999999998 456777777666
Q ss_pred hhcCCCccCCceEEEEcCChhhHHHHHHH
Q 004319 147 KKELPKLSEGFSRITLCQNENDVQAALDT 175 (761)
Q Consensus 147 ~~e~P~~~EgFd~V~vv~~~~ei~~~l~~ 175 (761)
.-..- ..++ .|..+++..+++.+...
T Consensus 150 ~a~~~--~~~~-dv~~idNsG~l~~ag~~ 175 (192)
T COG3709 150 AARYT--AGPG-DVTTIDNSGELEDAGER 175 (192)
T ss_pred hcccc--cCCC-CeEEEcCCCcHHHHHHH
Confidence 43322 2233 46777777777766544
No 182
>PRK07429 phosphoribulokinase; Provisional
Probab=98.10 E-value=3.7e-05 Score=84.44 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=73.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEecccccC---------CC--CCcH---HHHHHHHHHHHHCC---
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINK---------GK--SGTK---VQCLTSASSALKKG--- 78 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~D~i~~---------~~--~~~~---~~~~~~~~~~L~~g--- 78 (761)
..++.+|-|+|.+|||||||++.|...++. ....++.|.+.. +. ..+. ...+......++.|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 356889999999999999999999988763 345678877631 11 0000 11222222344433
Q ss_pred ---------------------CcEEEeCCC-CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 004319 79 ---------------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK 136 (761)
Q Consensus 79 ---------------------~~VIID~tn-~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v 136 (761)
..||+|+.. +.......+.++ .||+++|.++...|..+|....++ ..
T Consensus 85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~--------~I~Vda~~evr~~Rri~Rd~~rrG---~s 153 (327)
T PRK07429 85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDF--------KVYLDPPEEVKIAWKIKRDMAKRG---HT 153 (327)
T ss_pred ecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCE--------EEEEECCHHHHHHHHHHHHHhhcC---CC
Confidence 247788854 332222334333 789999999999888877754332 34
Q ss_pred hHHHHHHHHh
Q 004319 137 AAAVVNRMLQ 146 (761)
Q Consensus 137 ~~~vI~r~~~ 146 (761)
.+++..++.+
T Consensus 154 ~eei~~~i~~ 163 (327)
T PRK07429 154 YEQVLAEIEA 163 (327)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 183
>PLN02772 guanylate kinase
Probab=98.09 E-value=3.4e-05 Score=85.79 Aligned_cols=139 Identities=15% Similarity=0.176 Sum_probs=77.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEEec-----------------ccc----cCCCCCcHHH-------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQ-----------------DTI----NKGKSGTKVQ------- 66 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~I~~-----------------D~i----~~~~~~~~~~------- 66 (761)
...+++|+||+|+||||+.++|.+.+.. ...+..+ +.+ .++.+..+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 4469999999999999999999886531 1111111 111 0111111111
Q ss_pred -HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319 67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (761)
Q Consensus 67 -~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~ 145 (761)
-.+.+...+..|+.+|+|- ...-++.+++. .-..+.++++..+.+++.+|+..|... ..+.+..|+.
T Consensus 214 Tsk~~V~~vl~~Gk~vILdL---D~qGar~Lr~~--~l~~v~IFI~PPSlEeLe~RL~~RGte-------seE~I~kRL~ 281 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDI---DVQGARSVRAS--SLEAIFIFICPPSMEELEKRLRARGTE-------TEEQIQKRLR 281 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeC---CHHHHHHHHHh--cCCeEEEEEeCCCHHHHHHHHHhcCCC-------CHHHHHHHHH
Confidence 1245677789999999986 22233333322 111233334455689999999999763 3344444443
Q ss_pred hh-hcCCC--ccCCceEEEEcCChhhH
Q 004319 146 QK-KELPK--LSEGFSRITLCQNENDV 169 (761)
Q Consensus 146 ~~-~e~P~--~~EgFd~V~vv~~~~ei 169 (761)
.. .+... ....||.+++.++.++.
T Consensus 282 ~A~~Ei~~~~~~~~fD~vIvNDdLe~A 308 (398)
T PLN02772 282 NAEAELEQGKSSGIFDHILYNDNLEEC 308 (398)
T ss_pred HHHHHHhhccccCCCCEEEECCCHHHH
Confidence 33 12221 13458888777654433
No 184
>PRK15453 phosphoribulokinase; Provisional
Probab=98.07 E-value=4.3e-05 Score=81.59 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=33.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~ 57 (761)
.++.+|.++|.|||||||+|+.+.+.++ .....++.|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 3567899999999999999999987664 346788998875
No 185
>PRK05439 pantothenate kinase; Provisional
Probab=98.06 E-value=1.3e-05 Score=87.10 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=66.1
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccC--------------CCCCcHH-HHHHHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINK--------------GKSGTKV-QCLTSASSAL 75 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~--------------~~~~~~~-~~~~~~~~~L 75 (761)
..+.|.+|.|.|+|||||||+|+.|...++ .....|+.|.+.. |...+.+ ..+......|
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 456789999999999999999999987654 2466788887731 1111111 1122233334
Q ss_pred HCCC---------------------------cEEEeCCCCCHHHHH-HHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 76 KKGK---------------------------SVFLDRCNLEREQRT-DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 76 ~~g~---------------------------~VIID~tn~~~~~R~-~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
+.|+ .+|++|.+.-...+. .+..+ .-.++ .||+++|.+++.+|..+|.
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~---~IfVda~~~~~~~w~i~R~ 238 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDF---SIYVDADEDLIEKWYIERF 238 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCE---EEEEECCHHHHHHHHHHHH
Confidence 4332 267777554322111 22222 11222 7899999999999888886
Q ss_pred c
Q 004319 127 E 127 (761)
Q Consensus 127 ~ 127 (761)
.
T Consensus 239 ~ 239 (311)
T PRK05439 239 L 239 (311)
T ss_pred H
Confidence 4
No 186
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=1.1e-05 Score=83.66 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=77.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC------------------CCCCcHHHHHHHHHHHHHCC-
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKKG- 78 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~------------------~~~~~~~~~~~~~~~~L~~g- 78 (761)
+..=++++|+|||||+|+|.++.+.++ ..|+.. |.+++ +...+.+.....+...|..+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~--~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG--VIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC--CccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence 456789999999999999999999988 555654 44432 22333333444445556555
Q ss_pred --CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 79 --KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 79 --~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
+.+|+|++..+..+-..+.+. ...+. +|.|++|.+.+.+|+..|.-|+
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~---Vi~l~vp~~~L~~ri~~r~ihp 142 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDL---VINLKVPEEVLVDRITGRRIHP 142 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcce---EEEecCCHHHHHHHHhcccccC
Confidence 679999999988876666555 44444 8899999999999999998764
No 187
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6.9e-06 Score=83.59 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=84.9
Q ss_pred CcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeee
Q 004319 576 DDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRL 647 (761)
Q Consensus 576 ~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~ 647 (761)
..++|+|++ |++|.|.. -....|+++|-++..|.+++||+..|..+|.++.......+...+.-+ ....++
T Consensus 155 erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd-~n~l~m 233 (305)
T COG5075 155 ERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVD-PNELRM 233 (305)
T ss_pred ceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcC-hhHeEE
Confidence 459999986 66799876 345789999998889999999999999998877655443332111111 235788
Q ss_pred cccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHh
Q 004319 648 GYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISN 698 (761)
Q Consensus 648 G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~ 698 (761)
-+|..||.+|||+||+.-+ +- |=++-..+-=+.++||++.|..
T Consensus 234 fvHY~PsYyhlHvHI~nIk-------h~-~g~~~a~graIlL~DVI~~Lr~ 276 (305)
T COG5075 234 FVHYQPSYYHLHVHIVNIK-------HP-HGGNVACGRAILLEDVIENLRI 276 (305)
T ss_pred EEEeccceEEEEEEEEeec-------cc-CCCCcccceeeEHHHHHHHhcc
Confidence 9999999999999999753 32 3333445778899999999966
No 188
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.02 E-value=5e-07 Score=108.30 Aligned_cols=80 Identities=13% Similarity=0.000 Sum_probs=64.5
Q ss_pred ccccccccccccccccccccccccccCCCCccccccccCCCCCCCC----------eeecccccccCCCCCHHHHHHHHH
Q 004319 232 TEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVII 301 (761)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------SiafPaIStg~~gfp~~~aa~i~~ 301 (761)
.+.+++|++++|.|-|-|..+.+ .+.+..-...|+. .++...++ |||||+||||+||||.++|+.|++
T Consensus 592 ~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~-~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~ 669 (725)
T PRK13341 592 PAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALL-EAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDS 669 (725)
T ss_pred CCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHH-HHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCH
Confidence 88999999999999999976432 1223333334444 55666777 999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 004319 302 EKVEEFVNKLGN 313 (761)
Q Consensus 302 ~~v~~f~~~~~~ 313 (761)
++|+.|+.+.++
T Consensus 670 ~~i~~~~~~~~~ 681 (725)
T PRK13341 670 KLIKRWLAQGPD 681 (725)
T ss_pred HHHHHHHhcCCc
Confidence 999999998775
No 189
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.99 E-value=7.4e-05 Score=77.86 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=69.6
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEE-EecccccCC--------C------C--CcHHHHHHHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWAR-ICQDTINKG--------K------S--GTKVQCLTSASSALK 76 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~-I~~D~i~~~--------~------~--~~~~~~~~~~~~~L~ 76 (761)
...+.++.|.|++|||||||++.|...+.. ...+ ++.|.+... . . .+...+.+. ...+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~-l~~l~ 108 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAAL-LRRLR 108 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHH-HHHHH
Confidence 457899999999999999999999877652 2223 565554211 1 1 112222222 22222
Q ss_pred C---------------------------CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 77 K---------------------------GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 77 ~---------------------------g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
. ...+|+|+....... ..|..+ ...+ .+|++++|.+++.+|+..|...
T Consensus 109 ~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~l~~~~D---~vi~v~~~~~~~~~R~~~R~~~ 184 (229)
T PRK09270 109 AGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRRLAGLFD---FTIFLDAPAEVLRERLVARKLA 184 (229)
T ss_pred cCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHh
Confidence 2 223677885553211 122222 2233 3899999999999999999642
Q ss_pred cCCCCCCChHHHHHHHHh
Q 004319 129 EGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 129 ~~~~~~~v~~~vI~r~~~ 146 (761)
.+ ..++++..++.+
T Consensus 185 ~g----~s~~~~~~~~~~ 198 (229)
T PRK09270 185 GG----LSPEAAEAFVLR 198 (229)
T ss_pred cC----CCHHHHHHHHHh
Confidence 11 344555555543
No 190
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.96 E-value=9.7e-06 Score=81.61 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=66.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcH------------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTK------------ 64 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~------------ 64 (761)
+|.|+|..||||||+++.+.+ +| +.+++.|.+.. |.. ++
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G--~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~i-dR~~L~~~vF~d~~ 77 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG--FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEI-DRKKLAEIVFSDPE 77 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT---EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB--HHHHHHHHTTSHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC--CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCC-hHHHHHHHHhcCHH
Confidence 789999999999999999987 77 88899887721 110 11
Q ss_pred ----------HHHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319 65 ----------VQCLTSASSALK---KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (761)
Q Consensus 65 ----------~~~~~~~~~~L~---~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~ 131 (761)
....+.+.+.+. ....+|+|...+.......+ .+. ++++.+|.++..+|+.+|.+
T Consensus 78 ~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~-----~D~---vi~V~a~~e~ri~Rl~~R~~---- 145 (180)
T PF01121_consen 78 KLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKL-----CDE---VIVVYAPEEIRIKRLMERDG---- 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGG-----SSE---EEEEE--HHHHHHHHHHHHT----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhh-----hce---EEEEECCHHHHHHHHHhhCC----
Confidence 001122333232 22568899977765432222 232 78889999999999999975
Q ss_pred CCCCChHHHHHHHHhhh
Q 004319 132 LQGGKAAAVVNRMLQKK 148 (761)
Q Consensus 132 ~~~~v~~~vI~r~~~~~ 148 (761)
-..+.+..++..++
T Consensus 146 ---~~~~~~~~ri~~Q~ 159 (180)
T PF01121_consen 146 ---LSEEEAEARIASQM 159 (180)
T ss_dssp ---STHHHHHHHHHTS-
T ss_pred ---CcHHHHHHHHHhCC
Confidence 23455555555543
No 191
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.93 E-value=3e-05 Score=80.50 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCC--------------CCC--cHHHHHHHHHHHHHC---
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKG--------------KSG--TKVQCLTSASSALKK--- 77 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~--------------~~~--~~~~~~~~~~~~L~~--- 77 (761)
||.|.|++||||||||+.|...+. ....+++.|.+... ... +.... ......|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l-~~~L~~l~~g~~ 79 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEAL-LKFLKDIKSGKK 79 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHH-HHHHHHHHCCCC
Confidence 578999999999999999988763 34567788877311 111 11111 222222332
Q ss_pred ------------------------CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 78 ------------------------GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 ------------------------g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+.+|+|+.+.-......|..+ .-.+. .||+++|.+++.+|+..|..
T Consensus 80 ~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~---~ifvd~~~~~~~~rl~~R~~ 151 (220)
T cd02025 80 NVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDF---SIYVDADEDDIEKWYIKRFL 151 (220)
T ss_pred cEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCe---EEEEECCHHHHHHHHHHHHH
Confidence 2237778865543322222222 22233 78999999998888777743
No 192
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.93 E-value=3.5e-05 Score=88.97 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c-----------H-HHHHHHHHHHHHCCCcEEEeC---
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T-----------K-VQCLTSASSALKKGKSVFLDR--- 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~-----------~-~~~~~~~~~~L~~g~~VIID~--- 85 (761)
-|+|+|+|||||||+++.|++.++ +.+++.|.+.+...+ + + .+....+.+.+.....+||..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg--~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg 79 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD--LQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG 79 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence 389999999999999999999998 667888877532221 0 0 011122222233333445533
Q ss_pred CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
.......|..+ ++ + .+|||++|.+++.+|+..|
T Consensus 80 vv~~~~~r~~l---~~-~---~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 80 VVIDPENRELL---KK-E---KTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred cccChHHHHHH---hc-C---eEEEEECCHHHHHHHhccC
Confidence 13444555544 32 2 2789999999999999765
No 193
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=97.91 E-value=1e-06 Score=81.33 Aligned_cols=98 Identities=9% Similarity=0.100 Sum_probs=66.3
Q ss_pred CcchhhHHHHHHHHhhCC-CCCCCCCCcccCCCCCCCccccccccccccccccccccccc--ccccCCCCccccccccCC
Q 004319 195 PDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTENPEVASVNQNG 271 (761)
Q Consensus 195 ~~~~~~~~i~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 271 (761)
...++...+++.+++.-. ......|.+. .|.+.++.|.+++|.|.|-|.... .....++.-++.++. ..
T Consensus 18 i~~~~g~~~~~~~~~~~~~~~~~~~G~~~-------~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~-~a 89 (118)
T PF01661_consen 18 IFKAAGPALQEECKEIKKKGGELPVGEVI-------VTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQ-KA 89 (118)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHSSSTTSEE-------EEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHH-HH
T ss_pred HHHhchHHHHHHHHHhhcccCcccCCCee-------eecCCCccccceEEEecceeccccccccHHHHHHHHHHHHH-HH
Confidence 344556677777765521 0112224443 567888899999999988875321 233334455555555 45
Q ss_pred CCCCCCeeecccccccCCCCCHHHHHHHH
Q 004319 272 SSSDVPTLAFPSLSTSDFQFNNEKASDVI 300 (761)
Q Consensus 272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~ 300 (761)
...+++||+||+||||++|||++++++++
T Consensus 90 ~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 90 EENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 56789999999999999999999999975
No 194
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=97.90 E-value=2.8e-06 Score=85.67 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=47.3
Q ss_pred cccccccccc---c-ccccccccccCCCCccccccccCCCC--CCCCeeecccccccCCCCCHHHHHHHHHHHHHHHH
Q 004319 237 SCLEGQEITS---L-LSDAAGEEVKGTENPEVASVNQNGSS--SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (761)
Q Consensus 237 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~ 308 (761)
.|.++.|+.+ | .+.+ +.+...+-+..++. ..+. ..++|||||+||||++|||.++||++++.++++|+
T Consensus 113 ~~~~iIHaPtm~~P~~~~~---~~~~l~~a~~~~L~-~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 113 GIPYLIHAPTMRVPSPVIT---GTEPVFDAMWNALN-AIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred CCCEEEEcCcccCCCCCCC---cHHHHHHHHHHHHH-HHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 3999999865 3 1221 11112233334443 2222 37999999999999999999999999999999984
No 195
>PRK06761 hypothetical protein; Provisional
Probab=97.89 E-value=4.8e-05 Score=81.67 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=68.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-----------CCcHHH---H--------HHHHHHHHHC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-----------SGTKVQ---C--------LTSASSALKK 77 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-----------~~~~~~---~--------~~~~~~~L~~ 77 (761)
..+|+++|+|||||||+++.+++.+.... ++.+.+.++. ..+..+ . .....+.+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g--~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~ 80 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNG--IEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKK 80 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCc--eEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 35899999999999999999999876321 1211111111 011111 1 1244566678
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 78 GKSVFLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
|..+|+-...+...+|..+.+. ... .+..++ ..|.|...+|...|..+
T Consensus 81 g~~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~p~e~i~~R~~~rw~~ 130 (282)
T PRK06761 81 GDYYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-ELPFDKNTELITDRWND 130 (282)
T ss_pred CCeEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cCCHHHHHHHHHHHHHH
Confidence 8889998888888888877642 111 233455 99999999999998764
No 196
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.87 E-value=0.00012 Score=77.78 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK 58 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~ 58 (761)
+|.++|.+||||||+++++.+.++ ..+..|+.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 578999999999999999887664 4578899998854
No 197
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.87 E-value=5.9e-05 Score=81.43 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i 56 (761)
...|.+|.|.|++||||||+|+.|...+. .....++.|.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 45789999999999999999988765442 23566777766
No 198
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.84 E-value=8.8e-05 Score=86.08 Aligned_cols=40 Identities=35% Similarity=0.428 Sum_probs=32.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
...+.+|.|.|++|||||||++.|+..++ ....|+.|.+.
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp-~vgvIsmDdy~ 101 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVISMDNYN 101 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC-CcEEEEEccee
Confidence 34578999999999999999999998874 24567777663
No 199
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.84 E-value=0.00013 Score=78.32 Aligned_cols=114 Identities=21% Similarity=0.309 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCC---------CC--CcH---HHHHHHHHHHHHCC--------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKG---------KS--GTK---VQCLTSASSALKKG-------- 78 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~---------~~--~~~---~~~~~~~~~~L~~g-------- 78 (761)
+|.|+|++|||||||++.|...++ .....++.|.+..- .. ... ...+......++.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 578999999999999999998765 23557888766321 00 000 11112222334433
Q ss_pred ----------------CcEEEeCCC-CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 004319 79 ----------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (761)
Q Consensus 79 ----------------~~VIID~tn-~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI 141 (761)
+.+|+|+.. +.......+.++ .||+++|.++.++|..+|....++ ...+++.
T Consensus 81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~--------~I~vd~~~e~r~~r~i~Rd~~rrG---~s~e~v~ 149 (273)
T cd02026 81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDF--------SVYLDISDEVKFAWKIQRDMAERG---HSLEDVL 149 (273)
T ss_pred cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccE--------EEEEECChhHHHHHHHHHHHHHhC---CCHHHHH
Confidence 247778754 222222223222 799999999997777766643322 3445555
Q ss_pred HHHHh
Q 004319 142 NRMLQ 146 (761)
Q Consensus 142 ~r~~~ 146 (761)
.++..
T Consensus 150 ~~i~~ 154 (273)
T cd02026 150 ASIEA 154 (273)
T ss_pred HHHHh
Confidence 55543
No 200
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.81 E-value=0.00021 Score=82.63 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
.+.+|.+.|++||||||+|+.|++.++ +.+++.|.++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~Y 319 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMY 319 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCcee
Confidence 557899999999999999999999998 7788877764
No 201
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=97.79 E-value=9.5e-06 Score=78.23 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=74.0
Q ss_pred CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCccccccc-cccccccccccccccc--ccccCCCCccccccccC
Q 004319 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNS-CLEGQEITSLLSDAAG--EEVKGTENPEVASVNQN 270 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 270 (761)
......++.+++.++..........|... .|..++++ |-++.|.+.+-+.... ...+.+.+-++.|+. .
T Consensus 35 ai~~~~g~~~~~~~~~~~~~~~~~~G~~~-------~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~-~ 106 (147)
T cd02749 35 AISKKAGKELEEESKKLRKELELQVGEAV-------LTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLK-E 106 (147)
T ss_pred HHHHHhCHHHHHHHHHHhcccCCCCCCEE-------ECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHH-H
Confidence 44556667788888877654322335553 45567787 9999999998877632 122334555566665 3
Q ss_pred CCCCCCCeeecccccccCCCC------CHHHHHHHHHHHH
Q 004319 271 GSSSDVPTLAFPSLSTSDFQF------NNEKASDVIIEKV 304 (761)
Q Consensus 271 ~~~~~~~SiafPaIStg~~gf------p~~~aa~i~~~~v 304 (761)
+...+++|||||.||||++|| |++.+++++..++
T Consensus 107 ~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 107 AEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred HHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 445689999999999999999 9999999998875
No 202
>PRK07933 thymidylate kinase; Validated
Probab=97.78 E-value=0.00048 Score=71.20 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec-----c----cc----cC--CCC--Cc----------HHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----D----TI----NK--GKS--GT----------KVQCLTSA 71 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~-----D----~i----~~--~~~--~~----------~~~~~~~~ 71 (761)
+|++-|+-||||||+++.|.+.+. ..+..+.. . .+ .. +.. .. +.+..+.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I 81 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDEL 81 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHH
Confidence 799999999999999999998765 22222211 1 11 11 111 01 11112345
Q ss_pred HHHHHCCCcEEEeCCCCCHHH-------------HHHHHHh-C--CCC--ceEEEEEEeCCHHHHHHHHHhccc
Q 004319 72 SSALKKGKSVFLDRCNLEREQ-------------RTDFVKL-G--GPE--VDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn~~~~~-------------R~~~~~l-~--~~~--~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..++..|..||.|....+.-. -..|+.. . ..+ .+=.+|+|++|.+++.+|+.+|..
T Consensus 82 ~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~ 155 (213)
T PRK07933 82 AGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA 155 (213)
T ss_pred HHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence 667788999999995554311 1223322 1 111 234689999999999999999864
No 203
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.77 E-value=7.1e-05 Score=63.24 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL- 99 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l- 99 (761)
+|+++|+|||||||+++.|.+.++ ..+.+++. .+|+|+......+|. ..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------------~~I~eg~~~~~~~~~--~~~~ 52 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------------IVILEGLYASYKSRD--ARIR 52 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------------EEEecchhhhhhhHH--hhcc
Confidence 478899999999999999998852 23444433 889999777766654 222
Q ss_pred CCCCceEEEEEEeC
Q 004319 100 GGPEVDVHAVVLDL 113 (761)
Q Consensus 100 ~~~~~~v~vV~Ld~ 113 (761)
...+. .||+++
T Consensus 53 ~~~d~---~Iyld~ 63 (69)
T cd02019 53 DLADL---KIYLDA 63 (69)
T ss_pred ccccE---EEEEEe
Confidence 33333 666665
No 204
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00042 Score=70.75 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=84.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEEecccc----cCCC--CCcHHH------HHHHHHHHHHCC-----Cc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPW--ARICQDTI----NKGK--SGTKVQ------CLTSASSALKKG-----KS 80 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~--~~I~~D~i----~~~~--~~~~~~------~~~~~~~~L~~g-----~~ 80 (761)
..+|++-|+-|+||||+|+.|+++++... ..+..|-+ .+.. +..-.+ ..+...+++..+ ++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs 83 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS 83 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 35899999999999999999999998221 11122211 1110 111111 112233333333 33
Q ss_pred EEEeC----------CCCCHHHHHHHHHh---------CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 004319 81 VFLDR----------CNLEREQRTDFVKL---------GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (761)
Q Consensus 81 VIID~----------tn~~~~~R~~~~~l---------~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI 141 (761)
|+-|. .++++..-.-|.++ ...+.+=.+|+|+++.++.++|+.+|++.-..........-+
T Consensus 84 I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~ 163 (216)
T COG1428 84 IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYL 163 (216)
T ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHH
Confidence 33333 23333333333332 333455679999999999999999998753321111111233
Q ss_pred HHH---Hhhh-----cCCCccCCceEEEEcCChhhHHHHHHHh
Q 004319 142 NRM---LQKK-----ELPKLSEGFSRITLCQNENDVQAALDTY 176 (761)
Q Consensus 142 ~r~---~~~~-----e~P~~~EgFd~V~vv~~~~ei~~~l~~~ 176 (761)
..+ +..| ..|...=..+.+-++.++++.+.++...
T Consensus 164 ~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I 206 (216)
T COG1428 164 KDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQI 206 (216)
T ss_pred HHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHH
Confidence 332 2222 1444433345666677778777776654
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.76 E-value=0.00011 Score=68.36 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=44.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHH-HHHHHHHHCC--CcEEEeC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKKG--KSVFLDR 85 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~-~~~~~~L~~g--~~VIID~ 85 (761)
|+|.|+||+||||+++.+++.++.++..++...+.........+.+ ..+.++-..+ ..++||.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 6899999999999999999999977777887777644444444433 3333333343 3467787
No 206
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.74 E-value=0.00041 Score=71.94 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=28.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
+.+|.|.|++||||||+++.|++.++ +.+++.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~--~~~~~~g~ 35 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLG--YAYLDSGA 35 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--CceeeCch
Confidence 46899999999999999999999888 44565553
No 207
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.72 E-value=0.0001 Score=75.47 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
..+|-|+|.+||||||+|+.+.+ +| +.+++.|.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G--~~vidaD~v 35 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG--FPVIDADDV 35 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC--CeEEEccHH
Confidence 46899999999999999999988 87 777888877
No 208
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.71 E-value=0.00023 Score=71.35 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=76.9
Q ss_pred EEcCCCCcHHHHHHHHHHHcC-CCeE-EEec--------ccc----cCCCCCcH------------HHHHHHHHHHHHCC
Q 004319 25 MVGAPGSGKSTFCEHVMRSSA-RPWA-RICQ--------DTI----NKGKSGTK------------VQCLTSASSALKKG 78 (761)
Q Consensus 25 LvG~PGSGKSTfA~~L~~~~~-~~~~-~I~~--------D~i----~~~~~~~~------------~~~~~~~~~~L~~g 78 (761)
+=|+.||||||+++.|.+.+. .... .+.. +.+ ......+. ......+..++..|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g 80 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG 80 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 349999999999999988765 2221 2211 111 11111111 11124556788899
Q ss_pred CcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319 79 KSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (761)
Q Consensus 79 ~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~ 145 (761)
..||+|...++. .....+... -. ..+=.+|+|++|.+++.+|...|.... .......+.+.++.
T Consensus 81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~-~~PDl~~~Ldv~pe~~~~R~~~r~~~~--~~~~~~~~~~~~~~ 157 (186)
T PF02223_consen 81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFL-PKPDLTFFLDVDPEEALKRIAKRGEKD--DEEEEDLEYLRRVR 157 (186)
T ss_dssp SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHT-TE-SEEEEEECCHHHHHHHHHHTSSTT--TTTTHHHHHHHHHH
T ss_pred CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcC-CCCCEEEEEecCHHHHHHHHHcCCccc--hHHHHHHHHHHHHH
Confidence 999999932222 222222222 10 022348999999999999999998711 11122233344433
Q ss_pred hhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319 146 QKKELPKLSEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 146 ~~~e~P~~~EgFd~V~vv~~~~ei~~~l~ 174 (761)
..+..-.. .....++++...+++++..
T Consensus 158 ~~y~~l~~--~~~~~~iid~~~~~e~v~~ 184 (186)
T PF02223_consen 158 EAYLELAK--DPNNWVIIDASRSIEEVHE 184 (186)
T ss_dssp HHHHHHHH--TTTTEEEEETTS-HHHHHH
T ss_pred HHHHHHHc--CCCCEEEEECCCCHHHHHh
Confidence 33321111 1124667777666776654
No 209
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.69 E-value=0.00012 Score=82.59 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.|.|+|.+||||||+++.|.+ +| +.+|+.|.+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G--~~vidaD~i 34 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LG--AVVVDADVL 34 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--CeEEehHHH
Confidence 589999999999999999986 77 777998877
No 210
>PRK13974 thymidylate kinase; Provisional
Probab=97.69 E-value=0.00048 Score=70.96 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=62.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC--------CeEEEe--c---------cccc--CCC--CCcHH-HH---------
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARIC--Q---------DTIN--KGK--SGTKV-QC--------- 67 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--------~~~~I~--~---------D~i~--~~~--~~~~~-~~--------- 67 (761)
.+|++.|++||||||+++.|.+.+.. .+.... . +.+. .+. ..... .+
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~ 83 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH 83 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999977641 111111 0 1111 111 11111 11
Q ss_pred H-HHHHHHHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 68 L-TSASSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 68 ~-~~~~~~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+ ..+..++..|..||.|....+. ++-..+..+ ...-.+-.+|+|++|.+++.+|+..|..
T Consensus 84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d 157 (212)
T PRK13974 84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP 157 (212)
T ss_pred HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence 1 2356677888888888843332 112222222 1111244689999999999999988754
No 211
>PHA00729 NTP-binding motif containing protein
Probab=97.67 E-value=0.00021 Score=74.22 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=62.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-----cCCCCCcHHHHHHHHHHHHHCC---CcEEEeCCCCCH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----NKGKSGTKVQCLTSASSALKKG---KSVFLDRCNLER 90 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-----~~~~~~~~~~~~~~~~~~L~~g---~~VIID~tn~~~ 90 (761)
....|+|+|.||+||||+|.+++..++.....+..+.. ......+.......+..+.... ..+|||......
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWL 95 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhh
Confidence 44579999999999999999999886522222222211 1112234444555555444332 346999833222
Q ss_pred HH---H----HH---HHHh--CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 91 EQ---R----TD---FVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 91 ~~---R----~~---~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.. . .. +... .... .++++.++.+.|.+|+.+|+-
T Consensus 96 ~~~~wh~~~~~~yf~L~~aLrSR~~---l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 96 SKYVWYEDYMKTFYKIYALIRTRVS---AVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred cccchhhhccchHHHHHHHHHhhCc---EEEEecCCHHHHHHHHHhCCC
Confidence 11 1 11 2222 2222 277788899999999999864
No 212
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.59 E-value=0.00035 Score=67.14 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEE-E--------------------eccccc----CCCCCc--------HHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTIN----KGKSGT--------KVQCL 68 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~-I--------------------~~D~i~----~~~~~~--------~~~~~ 68 (761)
+|+|+|++||||||+++.|++.+...+.. + +.+.+. .+.+.. .....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 47899999999999999999875422111 1 111110 010000 00112
Q ss_pred HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC
Q 004319 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP 114 (761)
Q Consensus 69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p 114 (761)
..+.+.+..|+.+|+|. ++.....++.......+|++.+|
T Consensus 81 ~~i~~~~~~g~~~il~~------~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEI------DVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEe------cHHHHHHHHHcCCCeEEEEEECC
Confidence 45667788999999998 45555444334567788888888
No 213
>PLN02165 adenylate isopentenyltransferase
Probab=97.58 E-value=0.00049 Score=75.40 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=66.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc--cCC---------------C-----------C--CcHHH--
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--NKG---------------K-----------S--GTKVQ-- 66 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i--~~~---------------~-----------~--~~~~~-- 66 (761)
+..+|+|+|++||||||+|..|++.++ ..+|+.|.+ +++ . . .+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~--~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP--SEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC--CceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 344899999999999999999999987 456777765 010 0 0 01111
Q ss_pred --HHHHHHHHHHCCCcEEE-eCCCCCHHHHHH-H-------HH-----h-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 67 --CLTSASSALKKGKSVFL-DRCNLEREQRTD-F-------VK-----L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 67 --~~~~~~~~L~~g~~VII-D~tn~~~~~R~~-~-------~~-----l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
....+......|+..|+ =+|+++-..... + .. + ....+.+.+++|+.+.+++.+|+.+|-..
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~ 198 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDE 198 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 12344455566766555 445544322111 0 00 1 00224556788999999999999999763
No 214
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0026 Score=65.58 Aligned_cols=109 Identities=25% Similarity=0.251 Sum_probs=67.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEe--cc-----cc----cCC--CCCcH----------HH-HHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC--QD-----TI----NKG--KSGTK----------VQ-CLTSAS 72 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~--~D-----~i----~~~--~~~~~----------~~-~~~~~~ 72 (761)
..+|++=|+=||||||.++.|.+.+.. .+...- .+ .+ .++ ..... .+ ....+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~ 82 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIK 82 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999877652 121111 11 11 122 12211 11 224556
Q ss_pred HHHHCCCcEEEeCCCCCHH------------HHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 73 SALKKGKSVFLDRCNLERE------------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 73 ~~L~~g~~VIID~tn~~~~------------~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.++..|..||.|....+-- ....+.+. ...-.+-.+++||+|.+++.+|..+|...
T Consensus 83 pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 83 PALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 6788899999999554432 22222222 21002346899999999999999999764
No 215
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.53 E-value=0.00072 Score=71.06 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=73.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccC----------------------------CCCCc------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINK----------------------------GKSGT------ 63 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~----------------------------~~~~~------ 63 (761)
...+|++-|+-|||||+||+.|+++++ ..+..+..|.+.- ....+
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence 457999999999999999999999998 3334345555520 00000
Q ss_pred -------HHHHHHHHHHHHHCCCcEEEeCCCCCH---------------HHHHHHHHhC-----CCCceEEEEEEeCCHH
Q 004319 64 -------KVQCLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKLG-----GPEVDVHAVVLDLPAK 116 (761)
Q Consensus 64 -------~~~~~~~~~~~L~~g~~VIID~tn~~~---------------~~R~~~~~l~-----~~~~~v~vV~Ld~p~e 116 (761)
..+.+.++.-.|..|+.||++.+.++. ..+.-+-.++ +.=-+..+||||+|..
T Consensus 150 ~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~ 229 (393)
T KOG3877|consen 150 DRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVN 229 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcH
Confidence 122346677778899999999977664 1122222221 1111346899999999
Q ss_pred HHHHHHHhcccc
Q 004319 117 LCISRSVKRIEH 128 (761)
Q Consensus 117 ~~~~R~~~R~~~ 128 (761)
.|++|+.+|+..
T Consensus 230 ~v~~~Ik~rg~~ 241 (393)
T KOG3877|consen 230 KVLENIKRRGNT 241 (393)
T ss_pred HHHHHHHhcCCC
Confidence 999999999864
No 216
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.50 E-value=0.0014 Score=70.16 Aligned_cols=98 Identities=26% Similarity=0.335 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH------CCCcEEEeCCCCCH-HHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLER-EQR 93 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~------~g~~VIID~tn~~~-~~R 93 (761)
.+|+++|++||||||-.+.| +.+| | .|-|.+- - .++....+.+. .+-.++||.-+... ...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~G--y--~cvDNlP------~-~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~ 69 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLG--Y--YCVDNLP------P-SLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL 69 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcC--e--eEEcCCc------H-HHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence 47999999999999987766 5666 4 5556651 1 12222222222 11237889865543 222
Q ss_pred HHHHH-hCCCCceEEEEEEeCCHHHHHHHHH-hcccccC
Q 004319 94 TDFVK-LGGPEVDVHAVVLDLPAKLCISRSV-KRIEHEG 130 (761)
Q Consensus 94 ~~~~~-l~~~~~~v~vV~Ld~p~e~~~~R~~-~R~~~~~ 130 (761)
...+. +++.+..+.++||+++.+++.+|-. .|..|+-
T Consensus 70 ~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL 108 (284)
T PF03668_consen 70 FEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPL 108 (284)
T ss_pred HHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCC
Confidence 23333 3556899999999999999999975 5666653
No 217
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=97.49 E-value=1.6e-05 Score=75.14 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=51.6
Q ss_pred Cccccccccccccccccccccccc-ccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHH
Q 004319 230 QITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDV 299 (761)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i 299 (761)
-+.+.++.|.+++|.+++-|..+. .....+++.++.|+. .....+++|||||+|+||++|||+++++++
T Consensus 63 ~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~-~~~~~~~~sIa~P~igtG~~g~~~~~~~~~ 132 (133)
T smart00506 63 VTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLE-LAIELGITSVAIPLIGTGIYGVPKDRSAQA 132 (133)
T ss_pred EecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHH-HHHHcCCCEEEECCccCCCCCCCHHHHHhh
Confidence 355667889999999998887531 222334455555554 344578999999999999999999999986
No 218
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.48 E-value=0.0011 Score=72.43 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=31.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
++.+|+|+||+||||||+|..|++.++ ..+|+.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~--~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLN--GEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCC--CcEEecccc
Confidence 457999999999999999999999987 556887774
No 219
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.38 E-value=0.0011 Score=64.53 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=81.8
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-----------C-----------CC------CcH---
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----------G-----------KS------GTK--- 64 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-----------~-----------~~------~~~--- 64 (761)
...+-.||+|-|.|-||||++|+++..-+..+|.+|..|.+.+ + .. ++.
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 3445579999999999999999999988888899988776621 1 00 000
Q ss_pred --HHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319 65 --VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (761)
Q Consensus 65 --~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~ 131 (761)
......+...+..|-++|.|...-++.+.-+..+. -.++.+++|-+.+|.|+..+|-..|.++.++
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~-l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG 166 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRV-LEGCRVWMVGVHVPDEEGARRELRRGDRHPG 166 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHH-HhCCceEEEEeeccHHHHHHHHhhcCCcCcc
Confidence 01113455566788999999977775554444433 3567788888999999999988778775543
No 220
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.36 E-value=0.0011 Score=69.25 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=29.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+.+|.+.|++||||||+|+.|++.++ +.+++.+.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~--~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG--FHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--CCcccCchh
Confidence 47899999999999999999999998 555666553
No 221
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0018 Score=72.45 Aligned_cols=153 Identities=19% Similarity=0.280 Sum_probs=99.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFV 97 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~-VIID~tn~~~~~R~~~~ 97 (761)
+.+|++-+..-||||||.|+-|.+-++ |.++..|.+ .|.-++.. ..+.+....+.|-. |++|..|....+|..+.
T Consensus 373 e~tll~pia~igcgktt~ak~l~~lf~--w~~vqnd~l-sgk~~~k~-~~kai~~~~r~~~~~v~~drnnh~~~~r~~lq 448 (758)
T COG5324 373 EFTLLVPIATIGCGKTTVAKILEKLFG--WPVVQNDNL-SGKGGPKR-FAKAIIEEFRNGHSVVFADRNNHISNMRSTLQ 448 (758)
T ss_pred eeEEEEEEEEeccCcccHHHHHHHHcC--CcccccCCC-CCCCchhH-HHHHHHHHhccCceEEEEcccchhhhhhhhhh
Confidence 457999999999999999999999998 989999998 44434332 23555556666655 67788888888887665
Q ss_pred Hh---CCCCceEEEEEEe-CC--HHHHHHHHHhcccccCCCCCC----ChHHHHHHHHhhhcCCCc----cCCceEEEEc
Q 004319 98 KL---GGPEVDVHAVVLD-LP--AKLCISRSVKRIEHEGNLQGG----KAAAVVNRMLQKKELPKL----SEGFSRITLC 163 (761)
Q Consensus 98 ~l---~~~~~~v~vV~Ld-~p--~e~~~~R~~~R~~~~~~~~~~----v~~~vI~r~~~~~e~P~~----~EgFd~V~vv 163 (761)
.- -..++.+..+-++ +| +|....|+.+|+++....--+ ....+.+-+++++.+-.+ +..||.++.+
T Consensus 449 ~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~~~d~~~d~~iel 528 (758)
T COG5324 449 TDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGNKHDANYDDIIEL 528 (758)
T ss_pred cceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCCCccccccceeec
Confidence 42 2334444444333 33 477899999998764432111 123344455666655433 5568888888
Q ss_pred CC-hhhHHHHHHH
Q 004319 164 QN-ENDVQAALDT 175 (761)
Q Consensus 164 ~~-~~ei~~~l~~ 175 (761)
+. ....+++...
T Consensus 529 d~~~~sl~nar~i 541 (758)
T COG5324 529 DPLIGSLENARRI 541 (758)
T ss_pred ccccchhhhHHHH
Confidence 75 3455555443
No 222
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=97.28 E-value=0.0011 Score=72.26 Aligned_cols=131 Identities=14% Similarity=0.226 Sum_probs=85.0
Q ss_pred hhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceee
Q 004319 566 RTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAF 645 (761)
Q Consensus 566 ~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~ 645 (761)
+|+..-......+|+++|.+++|.--++.-+++++++|| +|+..+.+++++++.-|..+.........+... ...-+
T Consensus 191 ~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk-~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~--~~fpY 267 (338)
T COG1085 191 DLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPK-EHVSFLTDLSDEELKDLAEILKKLLARYDNLFG--NSFPY 267 (338)
T ss_pred HHHHHHhccCceEEecCceeEEeccccccCceEEEeccH-HHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccC--CCCce
Confidence 333333334456999999999999999999999999999 799999999998876555544433322222211 12248
Q ss_pred eecccCCC-c----ccceeeeeecCCccc-ccccccccccccC--cccccCHHHHHHHHHhc
Q 004319 646 RLGYHSAP-S----MRQLHLHVISQDFNS-KHLKNKKHWNSFN--TAFFCDSVDVLEEISNH 699 (761)
Q Consensus 646 ~~G~ha~p-S----v~HLHlHVIs~d~~s-~~lk~kkH~nsF~--t~fFv~~~~v~~~l~~~ 699 (761)
++|||..| . -.|+|+|+..+-..+ ..+|.-.-+-.++ .-++++.+++-++|++.
T Consensus 268 ~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~~~~~pEeaA~~LR~~ 329 (338)
T COG1085 268 SMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFIRDVTPEEAAERLRER 329 (338)
T ss_pred eeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceeeccCCHHHHHHHHHHh
Confidence 99999998 2 478888888853332 1121212222223 23566777877777553
No 223
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.012 Score=60.37 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
.+|.+-||.||||||+|+.|+++++ |.+++...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg--~~yldTGa 37 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG--FHYLDTGA 37 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC--CCeecccH
Confidence 6899999999999999999999999 66677533
No 224
>PLN02748 tRNA dimethylallyltransferase
Probab=97.21 E-value=0.0023 Score=73.42 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=33.2
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
..+++.+|+|+|++||||||+|..|+..++ ..+|+.|..
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~--~eii~~Dsm 56 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP--VEIINADSM 56 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcC--eeEEcCchh
Confidence 344567999999999999999999999988 677888853
No 225
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.20 E-value=0.0013 Score=69.76 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=67.9
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEEecccc--------------cCCCCCcHHH-HHHHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTI--------------NKGKSGTKVQ-CLTSASSAL 75 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-----~~~~I~~D~i--------------~~~~~~~~~~-~~~~~~~~L 75 (761)
....|.+|.++|+||+||||+|+.|...+.+ ....+-.|-+ ++|-..+.+. .+......+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence 4557899999999999999999998876541 1233444433 2333333221 111222233
Q ss_pred HCC---------------------------CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 76 ~~g---------------------------~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+.| +-+|++|.|+-... ..|..+ .-+++ .||+|++.+.+.+|+.+|--
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~-~p~~~~sdffDf---SIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDG-EPWLFLSDFFDF---SIYVDADEELLEERYIERFL 233 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCC-CccccccccceE---EEEecCCHHHHHHHHHHHHH
Confidence 322 23788885554433 255544 33444 78999999999999999975
Q ss_pred cc
Q 004319 128 HE 129 (761)
Q Consensus 128 ~~ 129 (761)
..
T Consensus 234 ~~ 235 (283)
T COG1072 234 KF 235 (283)
T ss_pred hc
Confidence 43
No 226
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=97.18 E-value=7.1e-05 Score=71.90 Aligned_cols=74 Identities=7% Similarity=0.017 Sum_probs=51.6
Q ss_pred cccccccccccccccccccccccccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHH
Q 004319 231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (761)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~ 305 (761)
+.+.++.+-++.|.+++.++-.......++.-++.+++ .....++.|||||+|++|++|||++++++++.+...
T Consensus 65 ~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~-~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~ 138 (140)
T cd02901 65 ERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRA-HARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA 138 (140)
T ss_pred ecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHH-HHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 44566678889999888765322222223333333333 333468999999999999999999999999877654
No 227
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.17 E-value=0.00042 Score=69.16 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
+++++|+|||||||||..++..++.++.++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 68999999999999999999987755656654
No 228
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0035 Score=61.88 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
+.+++++|.||+||||+.+...+.+ ..+..+|.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivNy 36 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVNY 36 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhceeeeH
Confidence 5789999999999999999988877 22455664
No 229
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.15 E-value=0.0011 Score=73.39 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=48.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~ 72 (761)
-..|.++.|.||||+|||.+|+.++++++..+..++..++..++.++.+..++.+.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F 200 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRY 200 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHH
Confidence 35688999999999999999999999999888899999999999988776654433
No 230
>PRK13976 thymidylate kinase; Provisional
Probab=97.12 E-value=0.0045 Score=63.90 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=61.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC----eEEEec--------cccc----C-CCCCcHHH----------H-HHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARP----WARICQ--------DTIN----K-GKSGTKVQ----------C-LTSASS 73 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~----~~~I~~--------D~i~----~-~~~~~~~~----------~-~~~~~~ 73 (761)
+|++-|+-||||||+++.|.+.+... -+++.. ..++ . .......+ . .+.+..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p 81 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILP 81 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998776421 111211 1111 1 11111111 1 134667
Q ss_pred HHHCCCcEEEeCCCCCHHHHH--------HHHH-h-C--CCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 74 ALKKGKSVFLDRCNLEREQRT--------DFVK-L-G--GPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 74 ~L~~g~~VIID~tn~~~~~R~--------~~~~-l-~--~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
+|..|..||.|...++--..+ .|+. + . ....+=.+|+|++|.+++.+|..+|
T Consensus 82 ~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 82 ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence 788999999999655532111 1222 2 1 1112346899999999999998644
No 231
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.10 E-value=0.0027 Score=65.17 Aligned_cols=128 Identities=15% Similarity=0.208 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------------------CCCCCcHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------------------KGKSGTKVQCLT 69 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------------------~~~~~~~~~~~~ 69 (761)
.|++++||+|+|||.+|-.|+++++ +.+|+.|.+. +|.. +..+..+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i-~a~ea~~ 78 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG--APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGII-NAEEAHE 78 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC--CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCc-CHHHHHH
Confidence 3789999999999999999999999 6677776651 1111 1222222
Q ss_pred HHHH---HHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319 70 SASS---ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (761)
Q Consensus 70 ~~~~---~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~r~ 144 (761)
.+.. .+..++.+|+++-..+.-.+- ..+. -..++.+++..+.++. +.-..|..+|-...- ..+......+...
T Consensus 79 ~Li~~v~~~~~~~~~IlEGGSISLl~~m-~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML-~p~~~~~Sll~EL 156 (233)
T PF01745_consen 79 RLISEVNSYSAHGGLILEGGSISLLNCM-AQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQML-RPDSSGPSLLEEL 156 (233)
T ss_dssp HHHHHHHTTTTSSEEEEEE--HHHHHHH-HH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHH-S--SSS--HHHHH
T ss_pred HHHHHHHhccccCceEEeCchHHHHHHH-HhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhc-CCCCCCCcHHHHH
Confidence 2222 233477899999666543332 2223 3467888999998876 555667777754321 1123335677777
Q ss_pred HhhhcCCCc
Q 004319 145 LQKKELPKL 153 (761)
Q Consensus 145 ~~~~e~P~~ 153 (761)
...|..|..
T Consensus 157 ~~lW~~p~~ 165 (233)
T PF01745_consen 157 VALWNDPAL 165 (233)
T ss_dssp HHHHTSTTH
T ss_pred HHHHhCccc
Confidence 777776664
No 232
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0031 Score=63.86 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=31.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
-.||-|.|.+.|||||+|+.|.+-++ ....|++|+++
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~-~~~lIhqDDFy 40 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFP-GCSLIHQDDFY 40 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHcc-CCeeecccccc
Confidence 35788999999999999999998877 35689999985
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.0015 Score=59.89 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~---~~~I~~D~i 56 (761)
..++|+|+|||||||+++.++..+... ...++.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 478999999999999999999988753 556665543
No 234
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.05 E-value=0.0042 Score=62.92 Aligned_cols=96 Identities=23% Similarity=0.262 Sum_probs=62.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCC-------------
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSG------------- 62 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~------------- 62 (761)
.+|-|+|..||||||+++.+. .+| +.+|+.|.+.. |...
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALG--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcC--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 368899999999999998876 777 66788877721 1100
Q ss_pred --------c----HHHHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 63 --------T----KVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 63 --------~----~~~~~~~~~~~L~~g~~-VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+ +.+.++.+...+-.|.. +|+|..-+-......| -.+.|++-|+.++..+|+.+|+.
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~--------~~~tvvV~cd~~~Ql~Rl~~Rd~ 148 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKI--------CHKTVVVTCDEELQLERLVERDE 148 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhh--------eeeEEEEEECcHHHHHHHHHhcc
Confidence 0 11123444555556654 6778855544422223 12367778999999999999984
No 235
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.0027 Score=66.40 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=74.1
Q ss_pred cccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------------------CC-------------C
Q 004319 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GK-------------S 61 (761)
Q Consensus 15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------------------~~-------------~ 61 (761)
.+...|.+|+|=|+||.||||+|..++.+++... .|+.|.+++ .| .
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia 162 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA 162 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcCCce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence 3556789999999999999999999999999543 478887742 00 0
Q ss_pred CcHHH-------HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEE-EeCCHHHHHHHHHhccc
Q 004319 62 GTKVQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVV-LDLPAKLCISRSVKRIE 127 (761)
Q Consensus 62 ~~~~~-------~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~-Ld~p~e~~~~R~~~R~~ 127 (761)
+-.++ .-..+.+++..|.++||++.++-+...+.-. . +.++..++ .-.+.++..+|...|..
T Consensus 163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~---~-~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEA---L-GNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhh---h-ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 00111 1156688999999999999888775533321 1 22233333 44567888889998875
No 236
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.001 Score=71.88 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=76.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCC-------cHHHHHH----HHHHHHHCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSG-------TKVQCLT----SASSALKKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~-------~~~~~~~----~~~~~L~~g~~VIID 84 (761)
.-+-|++.|++|+||||+.-+|.+- +++++--++.|.|+.|... ++++.++ .+.-....|-.+|..
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcits 128 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITS 128 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeeh
Confidence 4467899999999999988877654 4577777888999765421 2333222 222233455555655
Q ss_pred CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
......++|...+++ ...++++.-|++++|.++|.+|-.+
T Consensus 129 fispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k 169 (627)
T KOG4238|consen 129 FISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK 169 (627)
T ss_pred hcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence 566666889999999 8889999999999999999988654
No 237
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.005 Score=66.64 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=73.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCC----------------------C-----CcH----H
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------S-----GTK----V 65 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~----------------------~-----~~~----~ 65 (761)
+-.||+++|+.|||||-+|-.|+.+++ ..+|+.|.+. +|. . .+. .
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~--~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP--GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC--ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 557999999999999999999999988 6678877661 111 0 011 1
Q ss_pred HHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHH-----HH--------h-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 66 QCLTSASSALKKGKS-VFLDRCNLEREQRTDF-----VK--------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 66 ~~~~~~~~~L~~g~~-VIID~tn~~~~~R~~~-----~~--------l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.+...+....++|+. +|+=++|++-...-.- .+ + ....+..++++++++..++.+|+.+|-+.
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~ 161 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDD 161 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHH
Confidence 123455666677766 6666677765332110 00 1 12236688999999999999999999863
No 238
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.97 E-value=0.0025 Score=65.15 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~ 58 (761)
|.+|+|+||+|+||||.+.+|+..+ +.....++.|.+|-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 6899999999999999999987654 46677889988863
No 239
>PRK09087 hypothetical protein; Validated
Probab=96.95 E-value=0.0052 Score=64.15 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=65.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc------------------cccCCCCCcHHHHHHHHHHHHHCCCcEEE
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD------------------TINKGKSGTKVQCLTSASSALKKGKSVFL 83 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D------------------~i~~~~~~~~~~~~~~~~~~L~~g~~VII 83 (761)
.++|+|++|||||++++.+.+..+ ..+++.+ ++.. ...+...++..+......|+.+|+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~l~iDDi~~-~~~~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD--ALLIHPNEIGSDAANAAAEGPVLIEDIDA-GGFDETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC--CEEecHHHcchHHHHhhhcCeEEEECCCC-CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 589999999999999999987766 3344432 2211 112334455555566666788887
Q ss_pred eCCCCCHHHHHHHHHh---CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319 84 DRCNLEREQRTDFVKL---GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l---~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e 149 (761)
-++..........-++ -..+. ++.+..|.+..+..+.+|.-... ...++++++.-+.+++.
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~~~--~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFADR--QLYVDPHVVYYLVSRME 186 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhh
Confidence 6643222221111111 12233 56666666544444444332211 12567777777766554
No 240
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.86 E-value=0.0025 Score=66.07 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=44.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~ 98 (761)
.-+++.||||.||||+|+-++..++..+..++...+.+ . ... ..+...++.+..++||-.+.-....++++-
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k----~-~dl-~~il~~l~~~~ILFIDEIHRlnk~~qe~Ll 122 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK----A-GDL-AAILTNLKEGDILFIDEIHRLNKAQQEILL 122 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----C-HHH-HHHHHT--TT-EEEECTCCC--HHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----H-HHH-HHHHHhcCCCcEEEEechhhccHHHHHHHH
Confidence 35899999999999999999999997777676644421 1 111 233345677778889987776655555443
No 241
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.86 E-value=0.0065 Score=69.38 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=32.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
..|.+|+|+|++|+||||++.+|+..+ +.....++.|.++
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 468999999999999999999988655 3456678888764
No 242
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.85 E-value=0.0051 Score=64.63 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=62.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHC---CCcEEEeCCCCCH-HHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK---GKSVFLDRCNLER-EQRTDF 96 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~---g~~VIID~tn~~~-~~R~~~ 96 (761)
.+|++.|.+|||||+-.+.| +.+| | .|-|.+--.. ..++...+. .... .-.|++|--+..- ..-..+
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlG--y--ycvDNLPp~L---lp~~~~~~~-~~~~~~~kvAv~iDiRs~~~~~~l~~~ 72 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLG--Y--YCVDNLPPQL---LPKLADLML-TLESRITKVAVVIDVRSREFFGDLEEV 72 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcC--e--eeecCCCHHH---HHHHHHHHh-hcccCCceEEEEEecccchhHHHHHHH
Confidence 47999999999998876665 5666 4 6666662111 111222111 1111 1238899866632 334445
Q ss_pred HHh-CCC-CceEEEEEEeCCHHHHHHHHH-hccccc
Q 004319 97 VKL-GGP-EVDVHAVVLDLPAKLCISRSV-KRIEHE 129 (761)
Q Consensus 97 ~~l-~~~-~~~v~vV~Ld~p~e~~~~R~~-~R~~~~ 129 (761)
+.. +.. ++.+.++||+++.+++.+|-. .|..|+
T Consensus 73 l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HP 108 (286)
T COG1660 73 LDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHP 108 (286)
T ss_pred HHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCC
Confidence 554 544 467899999999999999985 555554
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.85 E-value=0.011 Score=67.31 Aligned_cols=40 Identities=33% Similarity=0.480 Sum_probs=33.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
..|.+|+|+|++||||||++.+|+..+ +.....++.|.++
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 458999999999999999999998655 4567778888875
No 244
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=96.84 E-value=0.0068 Score=60.35 Aligned_cols=93 Identities=16% Similarity=0.302 Sum_probs=51.6
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCc-
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS- 654 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS- 654 (761)
..+|+++|.+++|.--+...|+-++|+|| +|..++.++++++..-|..+...........+. ...-+.+|.|..|.
T Consensus 29 ~Riv~en~~f~a~vP~~a~wP~ev~ilpk-rh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~--~~~pY~m~ihqaP~~ 105 (166)
T PF02744_consen 29 ERIVYENEHFVAFVPFAARWPFEVWILPK-RHVPSLADLTDEERDDLAAILKPILRRYDNLFE--TSFPYNMGIHQAPVN 105 (166)
T ss_dssp TTEEEE-SSEEEE--TT--STT-EEEEES-S--SSGGG--HHHHHHHHHHHHHHHHHHHHHCT--S---EEEEEE---SS
T ss_pred CEEEEECCceEEEEECcccCCcEEEEecC-CChhhHHHhhhHHHhhHHHHHHHHHHHhcccCC--CCCCCchhhhcCCCC
Confidence 46999999999999999999999999999 899999999998766555554443333333332 12348999999881
Q ss_pred ----ccceeeeeecCCccccc
Q 004319 655 ----MRQLHLHVISQDFNSKH 671 (761)
Q Consensus 655 ----v~HLHlHVIs~d~~s~~ 671 (761)
-.++|+|+-..-..+.-
T Consensus 106 ~~~~~~~fH~H~e~~~ir~~~ 126 (166)
T PF02744_consen 106 GEDPEHWFHPHFEPPHIRSEN 126 (166)
T ss_dssp SS--TT--EEEEE--BESSTT
T ss_pred cccchhhhhcccccccccccc
Confidence 12377776554444444
No 245
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.79 E-value=0.0054 Score=56.88 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=28.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
....+++.|+||+||||+++.+...+ +..+..++....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 34578999999999999999999887 444555554443
No 246
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.0099 Score=66.69 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=33.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
...|.+|+|+|+-||||||.|-+|+..+ +...-.++.|.+|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 5578999999999999999998887544 4666778888885
No 247
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.77 E-value=0.02 Score=69.08 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
..+|.+.||+||||||+|+.|++.++ +.+++.+.++
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~--~~~~~~~~~~ 477 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG--YHYLDSGALY 477 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC--CeEecHHHhh
Confidence 34788999999999999999999999 6678877663
No 248
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.75 E-value=0.0083 Score=70.64 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=33.5
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
..+++.+++|+||||-||||+|.-+++..|..++.||.
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA 359 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA 359 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence 55677899999999999999999999999977777775
No 249
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=96.74 E-value=0.015 Score=54.83 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecc
Q 004319 570 YPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGY 649 (761)
Q Consensus 570 ~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ 649 (761)
+|.--...||.-.+++.+-...-|..++|+||||- .|..++..++++....|+...+..++..++. ..+..+|-..
T Consensus 19 n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi-~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~--~~~vvf~E~~- 94 (121)
T PF04677_consen 19 NPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPI-QHVPSLTELDEEVWEEIRNFQKSLRKMFASQ--GKDVVFFERV- 94 (121)
T ss_pred CCCccceEEEEEcCcEEEEeCCCCccCCEEEEEec-ceecccccCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEe-
Confidence 34422345778888888888889999999999999 8999999999998888888777666665443 1222334433
Q ss_pred cCCCcccceeeeeecCCcc
Q 004319 650 HSAPSMRQLHLHVISQDFN 668 (761)
Q Consensus 650 ha~pSv~HLHlHVIs~d~~ 668 (761)
.....|+||++|.-+..
T Consensus 95 --~~~~~H~~iq~vPvp~~ 111 (121)
T PF04677_consen 95 --RKRNPHTHIQCVPVPKE 111 (121)
T ss_pred --CCCCcEEEEEEEEcCHH
Confidence 55789999999987654
No 250
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.014 Score=63.12 Aligned_cols=25 Identities=28% Similarity=0.790 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.||+|.||||.||||+|++|++++.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhe
Confidence 5899999999999999999999975
No 251
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.66 E-value=0.0041 Score=72.00 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=43.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~ 72 (761)
..|.=|+|.|+||+|||.+|+.++..++.++..++...+..++.+..+..+..+.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f 311 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMI 311 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHH
Confidence 3466799999999999999999999999888788877777777666555444333
No 252
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.65 E-value=0.0071 Score=73.44 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+|.|.|+|||||||+|+.|++.++ |.+++...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~--~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG--YAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeecCcE
Confidence 689999999999999999999998 666776555
No 253
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.015 Score=60.21 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=77.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE-EEecccc--c----------------------CCCCCcHHH--------H
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTI--N----------------------KGKSGTKVQ--------C 67 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~-~I~~D~i--~----------------------~~~~~~~~~--------~ 67 (761)
.-++|+|++|.||+|+..+|.+.++..+- .++.+.- + ++....+.. .
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts 117 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS 117 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence 67999999999999999999999873111 1221110 0 111111111 1
Q ss_pred HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319 68 LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 68 ~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~ 146 (761)
...+++....|+..|+|- ..+....++......+.+++. ++..++.+|+.+|.. +..++.+.++..
T Consensus 118 i~av~~~~~~gk~~ildI------d~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt-------e~~~~l~~r~~s 184 (231)
T KOG0707|consen 118 IAAVQRLMLSGKVCILDI------DLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGT-------ETEESLLKRLKS 184 (231)
T ss_pred HHHHHHHHhcCCcceeeh------hhcCceeeecCCCceEEEEecCCcchhHHHHhhccCc-------chHHHHHHHHHh
Confidence 145556667788888877 222222224445566677776 556889999999955 566777777773
Q ss_pred hhcCCCccC---CceEEEEc
Q 004319 147 KKELPKLSE---GFSRITLC 163 (761)
Q Consensus 147 ~~e~P~~~E---gFd~V~vv 163 (761)
..++-...| .|+.+++-
T Consensus 185 a~~e~~~~~~~g~~d~~~~n 204 (231)
T KOG0707|consen 185 AEEEFEILENSGSFDLVIVN 204 (231)
T ss_pred hhhhhccccCCccccceecC
Confidence 333222333 38887776
No 254
>PRK10867 signal recognition particle protein; Provisional
Probab=96.64 E-value=0.018 Score=65.69 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~ 57 (761)
...|.+|+++|++||||||++.+|+..+ +.....++.|.++
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 3468999999999999999888877543 5567788988774
No 255
>PF13173 AAA_14: AAA domain
Probab=96.64 E-value=0.0051 Score=58.03 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHHHHH-CCCcEEEeCCCCCHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALK-KGKSVFLDRCNLEREQRTDFV 97 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~-~g~~VIID~tn~~~~~R~~~~ 97 (761)
.+++|.|+.|+||||+++++++.+. ..+..++.|+.......... ..+.+.+... ....++||-...-..+...+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk 81 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALK 81 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence 4799999999999999999998765 55667777766432111111 2222233222 345689999766665555444
Q ss_pred HhCCCCceEEEEEEeCCHHHH
Q 004319 98 KLGGPEVDVHAVVLDLPAKLC 118 (761)
Q Consensus 98 ~l~~~~~~v~vV~Ld~p~e~~ 118 (761)
.+.+.+... -|++..+....
T Consensus 82 ~l~d~~~~~-~ii~tgS~~~~ 101 (128)
T PF13173_consen 82 FLVDNGPNI-KIILTGSSSSL 101 (128)
T ss_pred HHHHhccCc-eEEEEccchHH
Confidence 442222112 44555554433
No 256
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.60 E-value=0.024 Score=56.02 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
+++++|+|||||||++..++..+ +..+..++.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 68999999999999999987664 455667887765
No 257
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.018 Score=63.68 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=30.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
..|.+|+++|+||+||||.+.+++..+ +.....++.|.++
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 458899999999999999888877554 3445567777664
No 258
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.53 E-value=0.01 Score=63.04 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
...-+++.|+||+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999998764
No 259
>PLN02840 tRNA dimethylallyltransferase
Probab=96.53 E-value=0.0067 Score=68.59 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=34.1
Q ss_pred hhhhhcccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 10 KAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 10 ~~~~~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+...-....+..+|+|+|++||||||+|..|++.++. .+|+.|.+
T Consensus 11 ~~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~~--~iis~Ds~ 55 (421)
T PLN02840 11 SGSGASKTKKEKVIVISGPTGAGKSRLALELAKRLNG--EIISADSV 55 (421)
T ss_pred CCCccccccCCeEEEEECCCCCCHHHHHHHHHHHCCC--CeEecccc
Confidence 3333345556679999999999999999999999883 45666653
No 260
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.53 E-value=0.018 Score=62.67 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.7
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
...|.++++.|+||+||||+++.+++..+..+..++...
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 335778899999999999999999988775555565533
No 261
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.52 E-value=0.0047 Score=69.62 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=34.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~ 62 (761)
.|.-|+|.|+||+|||++|+.++..++..+..++...+.....+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g 207 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG 207 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence 45669999999999999999999998877777766555433333
No 262
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=96.49 E-value=0.013 Score=62.38 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=69.3
Q ss_pred eEEEEecccccchhhHHHHHHhhhccc-CCeEEEEEEcccccccc-------cCCccccEEEeCCCCCCcCCCChhhHHH
Q 004319 314 ARLVLVDLTQGSKILSLVRAKAAQKHI-NPKKFFTFVGDITRLYT-------GGGLCCNVIANAANWRLKPGGGGVNAAI 385 (761)
Q Consensus 314 i~~v~vD~~~~s~~ls~v~~~~~~~~~-~~~~l~v~~GDIt~~~~-------~g~~~~daIVNaaN~~L~~~~gGV~~AI 385 (761)
++++++|.+..- .+.++..-....+ ++..+.+..|++..+.. ....++|+||.|||+.-- +|||.+.||
T Consensus 14 mkiil~D~N~~v--~k~W~~~l~~~~~~~~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGy-MgGGFDLai 90 (280)
T PF14519_consen 14 MKIILCDTNPIV--CKCWKKHLPKALISSSNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGY-MGGGFDLAI 90 (280)
T ss_dssp -EEEEEES-HHH--HHHHHHH-----------EEEEES-HHHHHHHTTSS--------EEEEEEEETT-----SHHHHHH
T ss_pred ceEEEEcCCHHH--HHHHHHHccHhhhccCceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhccc-CCCchhHHH
Confidence 689998876521 1111111111111 23448888898876642 133458999999999999 899999999
Q ss_pred HHhhc-HHHHHHHHHhc--CCCCCCCEEEecCCC---CCCCCCCCCccEEEEe---cCCC---CCCCCCCCCCCCchhhH
Q 004319 386 FSAAG-PALEVATAERA--KSLYPGNSVIVPLPS---TSPLCGREGVTHVIHV---LGPN---MNPRRPNCLDGDYVKGC 453 (761)
Q Consensus 386 ~~aAG-~~l~~e~~~~~--~~~~~G~avvT~l~~---~~~~~~~l~~k~VIH~---VGP~---~~~~~~~~l~~~~~~~~ 453 (761)
.++-| ..++.-.++.. .-.++|.+-+.+++. .+.-.++-+++||||+ |.|. |.... .+...-
T Consensus 91 ~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~------~~~t~~ 164 (280)
T PF14519_consen 91 SEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREV------PYETGW 164 (280)
T ss_dssp HHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-------TTTTTH
T ss_pred HHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhH------HHHHHH
Confidence 99955 45555555543 236789988877431 1111245789999998 3443 32221 123344
Q ss_pred HHHHHHHHHHHH
Q 004319 454 EILRKAYTSLFE 465 (761)
Q Consensus 454 ~~L~~ay~~~L~ 465 (761)
+.+-++.-|.|.
T Consensus 165 ~~vfn~~WN~l~ 176 (280)
T PF14519_consen 165 SLVFNAMWNALR 176 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 556666666653
No 263
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.021 Score=63.20 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=47.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDR 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~ 85 (761)
=|+|+||||+|||-+|++++.+.+-.|.-|+.-.+-..|.++.+.+++.+....+ ....++||-
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhh
Confidence 5899999999999999999999986666677777777788887776655544443 333455553
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.004 Score=71.89 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=46.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g 78 (761)
.|.=|+|+||||||||-+|++++.+.+..|..|-.-++.+.+.+..+..++.+.++.+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 366699999999999999999999999888777777776766676666555555544443
No 265
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.46 E-value=0.012 Score=54.89 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=50.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc--------CCCeEEEeccccc---------------CCCC-CcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS--------ARPWARICQDTIN---------------KGKS-GTKVQCLTSASSA 74 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~--------~~~~~~I~~D~i~---------------~~~~-~~~~~~~~~~~~~ 74 (761)
.+.++++.|+||+||||+++++.+.+ ...+..++..... .... .+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45689999999999999999999876 3233334321110 1111 2345556777777
Q ss_pred HHCCCc--EEEeCCCC--CHHHHHHHHHh-CCCCceEEEEEEeCC
Q 004319 75 LKKGKS--VFLDRCNL--EREQRTDFVKL-GGPEVDVHAVVLDLP 114 (761)
Q Consensus 75 L~~g~~--VIID~tn~--~~~~R~~~~~l-~~~~~~v~vV~Ld~p 114 (761)
+..... +|||.... ....-..+..+ . ...+.+|++-.|
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 766654 78888433 23333344444 4 334444444333
No 266
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.46 E-value=0.025 Score=64.50 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=33.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~ 57 (761)
..+|.+++++|++||||||++.+|+..+ +.....++.|.++
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3468999999999999999988887653 4567788988764
No 267
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=96.44 E-value=0.041 Score=61.98 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=85.5
Q ss_pred cccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC---------------C-C-CCcHHH----HHHH
Q 004319 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK---------------G-K-SGTKVQ----CLTS 70 (761)
Q Consensus 15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~---------------~-~-~~~~~~----~~~~ 70 (761)
.....+.+|+|+|+|++|||.++.++-+-+. ......+...+++ . + ..-+.+ ++..
T Consensus 23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D 102 (438)
T KOG0234|consen 23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALND 102 (438)
T ss_pred cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhh
Confidence 3556789999999999999999999877654 1112222211110 0 0 001112 2233
Q ss_pred HHHHHH--CCCcEEEeCCCCCHHHHHHHHHh-C-CCCceEEEEEEeCCHHHHHHHHHh-cccccCCCCCCChHHHHHHHH
Q 004319 71 ASSALK--KGKSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVK-RIEHEGNLQGGKAAAVVNRML 145 (761)
Q Consensus 71 ~~~~L~--~g~~VIID~tn~~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~R~~~-R~~~~~~~~~~v~~~vI~r~~ 145 (761)
+...+. .|...|.|+||.++..|+.+... + ..++.+.+|.--+....++.+++. +.-..+...+...+++..-++
T Consensus 103 ~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl 182 (438)
T KOG0234|consen 103 LLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFL 182 (438)
T ss_pred HHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHH
Confidence 333343 56779999999999999999999 6 778877777777888888888876 543333333445666666665
Q ss_pred hh
Q 004319 146 QK 147 (761)
Q Consensus 146 ~~ 147 (761)
++
T Consensus 183 ~r 184 (438)
T KOG0234|consen 183 KR 184 (438)
T ss_pred HH
Confidence 54
No 268
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.026 Score=60.62 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=32.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
..++.+|+++|++|+||||.+.+|+..+ +.....++.|.++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3457899999999999999999987655 3456678888653
No 269
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=96.43 E-value=0.0023 Score=68.68 Aligned_cols=76 Identities=29% Similarity=0.393 Sum_probs=49.5
Q ss_pred EEEecCCCCCCceEEEEeCCCCCCChh-cCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC---cccceeee
Q 004319 586 VVLNDLYPKAQKHILVLSRFDGLDRLA-DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP---SMRQLHLH 661 (761)
Q Consensus 586 vai~D~~Pka~~H~LVIPk~~hi~~l~-dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p---Sv~HLHlH 661 (761)
||+-...|...+|.|+||+ -..++. -++.+.+.+--+|+ .+. ....|++||++.- ||+|||+|
T Consensus 169 vvaIN~sPie~~H~LiiP~--V~kc~pQrit~~al~lav~~m-------~~~----dd~~frlgyNSlga~AsVNHLHfh 235 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPR--VLKCLPQRITHKALLLAVTMM-------AEA----DDPYFRLGYNSLGAFASVNHLHFH 235 (431)
T ss_pred eEEEecCccccCcEEEecc--hhccCcceeeHHHHHHHHHHH-------Hhc----CCchhheecccchhhhhhhhhhhh
Confidence 5566778999999999999 233332 23333333322222 221 1234899999865 99999999
Q ss_pred eecCCcccccccc
Q 004319 662 VISQDFNSKHLKN 674 (761)
Q Consensus 662 VIs~d~~s~~lk~ 674 (761)
..-.+++++--|.
T Consensus 236 a~y~p~d~~i~~~ 248 (431)
T KOG2720|consen 236 AYYLPMDFPIEKA 248 (431)
T ss_pred hhhccccCccccC
Confidence 9887777765544
No 270
>PHA03132 thymidine kinase; Provisional
Probab=96.42 E-value=0.043 Score=64.45 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-.+|++-|.-||||||+++.|.+.++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg 282 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILG 282 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998874
No 271
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.0095 Score=66.13 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCc--EEEeCCCC-CHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDRCNL-EREQRTDF 96 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~--VIID~tn~-~~~~R~~~ 96 (761)
..-.||.||||+||||+|+.|+...+..|..+|.-.- + ..+.+..++.+++....|+- ++||-.+. ++.+...+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--g-vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--G-VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--c-HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh
Confidence 3457899999999999999999999877766665221 1 01233455666566665655 45676543 33444444
Q ss_pred HHhCCCC
Q 004319 97 VKLGGPE 103 (761)
Q Consensus 97 ~~l~~~~ 103 (761)
+-.-+.|
T Consensus 125 Lp~vE~G 131 (436)
T COG2256 125 LPHVENG 131 (436)
T ss_pred hhhhcCC
Confidence 4333333
No 272
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.40 E-value=0.034 Score=61.04 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=31.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
.++.+++|+|++|+||||++.+|+..+ +.....++.|..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 457899999999999999999998655 3456667777653
No 273
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.40 E-value=0.016 Score=60.82 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..++|+|+||+|||+++..++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999887653
No 274
>PRK06620 hypothetical protein; Validated
Probab=96.35 E-value=0.029 Score=58.14 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..++|.|+||||||++++.++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4589999999999999999887665
No 275
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.34 E-value=0.0065 Score=64.13 Aligned_cols=108 Identities=13% Similarity=0.242 Sum_probs=72.9
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL 643 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~ 643 (761)
|.+|.+.-..-+..||.|+|+++++---..--++-+|+||| +|+..+.+|++....-|..+++....-..+.+... .
T Consensus 203 l~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk-~h~~~~~~l~~~~k~dLasiLK~ll~Kydnlfets--f 279 (354)
T KOG2958|consen 203 LMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPK-RHVSRFHELDEVEKVDLASILKLLLIKYDNLFETS--F 279 (354)
T ss_pred HHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeech-hhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccC--C
Confidence 44565544444567999999999998888888899999999 79999998887654433333332222222222222 2
Q ss_pred eeeecccCCC--------cccceeeeeecCCcccccccc
Q 004319 644 AFRLGYHSAP--------SMRQLHLHVISQDFNSKHLKN 674 (761)
Q Consensus 644 ~~~~G~ha~p--------Sv~HLHlHVIs~d~~s~~lk~ 674 (761)
-+++|.|..| .-+-||||...+=..|.-.++
T Consensus 280 PYsmg~h~aPl~~t~~e~~n~W~h~hFyppllrsatV~k 318 (354)
T KOG2958|consen 280 PYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLRSATVRK 318 (354)
T ss_pred ccccccccCCcccccccccchhhhhhccccchhhccccc
Confidence 3789999988 113479998888777766544
No 276
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.34 E-value=0.0066 Score=60.56 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
+++++|++||||||||.+++...+.+..++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 47899999999999999998876655656644
No 277
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.33 E-value=0.0075 Score=68.18 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=29.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
.|.-++|.|+||+|||++|+.++...+..+..+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 46779999999999999999999998866665544
No 278
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0059 Score=65.17 Aligned_cols=64 Identities=17% Similarity=0.364 Sum_probs=49.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCc--EEEeC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDR 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~--VIID~ 85 (761)
=|+|.||||.|||++|++++.+.+-.|.-|+..++-..|.+..+.+.+.+.+..++.+. +.||-
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDE 233 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDE 233 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 68999999999999999999888855656666666677888888888777777766655 34443
No 279
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.31 E-value=0.0068 Score=68.38 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-CCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG 62 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-~~~~ 62 (761)
|.-|+|+|+||+||||+|+.|++.++.++.+++...+.+ +|.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 567899999999999999999999998888888766654 5655
No 280
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.004 Score=59.19 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~ 52 (761)
|+|+|+||+|||++++.+++.++.++..+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~ 31 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRIN 31 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence 799999999999999999999986665554
No 281
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.29 E-value=0.009 Score=68.25 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=30.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.|.-++|.|+||+|||++|+.++..++..+..+....+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 45678899999999999999999998866666654444
No 282
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.22 E-value=0.0063 Score=62.76 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=25.7
Q ss_pred cccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.......++-|.|+||+||||.+..+....+
T Consensus 114 L~~n~~~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 114 LTSNNEELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred hcccchheeeeecCCCCcchhHHHHHHhhcc
Confidence 4455677999999999999999999887544
No 283
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.009 Score=69.08 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=50.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~ 85 (761)
.|.=|+|.||||||||.||++++.+++.++.-|+.-.+-.|..+..++-++.+.+..... ..++||-
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe 290 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE 290 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeec
Confidence 345589999999999999999999999999889988888888887766554444333332 3355554
No 284
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.20 E-value=0.0083 Score=66.93 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
|.-++|.|+||+||||+|+.++..++..+..+..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~ 189 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 189 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence 5568999999999999999999998866655544
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.033 Score=63.11 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~ 57 (761)
.+.+++++|++||||||++.+|+..+ +.....++.|..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999998654 3446667888764
No 286
>PRK12377 putative replication protein; Provisional
Probab=96.17 E-value=0.014 Score=61.84 Aligned_cols=102 Identities=12% Similarity=0.110 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHH--HHHHHHHHHHHCCCcEEEeCCC---CCHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCN---LEREQ 92 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~--~~~~~~~~~L~~g~~VIID~tn---~~~~~ 92 (761)
.-++|.|+||+|||++|.+++..+ +..+..++..++......... .....+.+.+..-..+|||... .+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~ 181 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNE 181 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence 468999999999999999988765 344445554333211000000 0112345566777789999963 34444
Q ss_pred HHHHHHh--CCCC-ceEEEEEEeCCHHHHHHHH
Q 004319 93 RTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 93 R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~R~ 122 (761)
...+..+ .++. ....+|--+.+.+.+.+++
T Consensus 182 ~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~ 214 (248)
T PRK12377 182 QVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL 214 (248)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHh
Confidence 4555555 3332 2344555677777665543
No 287
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.031 Score=61.74 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=64.4
Q ss_pred cccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC---------------c--H---HH-HHHH
Q 004319 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG---------------T--K---VQ-CLTS 70 (761)
Q Consensus 15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~---------------~--~---~~-~~~~ 70 (761)
...++|.+|+++|+.||||||.+-+|+..+. .....+|.|.++.+.+. + . .. ..+-
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 3566899999999999999999999886553 55678999999754321 1 0 11 1133
Q ss_pred HHHHHHCCCc-EEEeCCCCCHHHHH---HHHHh-CCCCceEEEEEEeCCH
Q 004319 71 ASSALKKGKS-VFLDRCNLEREQRT---DFVKL-GGPEVDVHAVVLDLPA 115 (761)
Q Consensus 71 ~~~~L~~g~~-VIID~tn~~~~~R~---~~~~l-~~~~~~v~vV~Ld~p~ 115 (761)
+.+.-+++-. +|+|.......+-. +++++ +.-...-+++++|.+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 4444455544 56676555543332 34444 4455555678889886
No 288
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.12 E-value=0.012 Score=66.54 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=35.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-CCCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGKSG 62 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~~~~~ 62 (761)
.|.-|+|+|+||+||||+|++|++.++.++..++.-.+. .++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 456799999999999999999999999777667654454 35655
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.031 Score=62.75 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=31.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~ 57 (761)
+|.+|+|+|++|+||||++.+|+..+. .....++.|..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 467999999999999999999986543 346678888764
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.058 Score=53.21 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
++.=|+++|+||+||||++.+++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 345689999999999999999987653
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.025 Score=63.26 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=45.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCCCc----------------HHHHHHHHHHHHHC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKSGT----------------KVQCLTSASSALKK 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~~~----------------~~~~~~~~~~~L~~ 77 (761)
+..+++|+|++|+||||++.+|+..+ + .....+..|.++-+.... ...-+..+...+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 45699999999999999999998653 3 345667788774321100 00011223344556
Q ss_pred CCcEEEeCCCCCH
Q 004319 78 GKSVFLDRCNLER 90 (761)
Q Consensus 78 g~~VIID~tn~~~ 90 (761)
.+.++||...+..
T Consensus 216 ~DlVLIDTaG~~~ 228 (374)
T PRK14722 216 KHMVLIDTIGMSQ 228 (374)
T ss_pred CCEEEEcCCCCCc
Confidence 6778999876664
No 292
>CHL00181 cbbX CbbX; Provisional
Probab=96.05 E-value=0.021 Score=61.78 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEEecccccCCCCCcHHH-HHHHHHHHHHCCCcEEEeCC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~-------~~~~~I~~D~i~~~~~~~~~~-~~~~~~~~L~~g~~VIID~t 86 (761)
.-++|.|+||+||||+|+.+++.+. ..+..++.+.+.....+.... ....+.+ ..|..++||-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~ 131 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEA 131 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEcc
Confidence 4588999999999999999987542 135566666553323222111 1122222 24567788874
No 293
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.016 Score=62.55 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=31.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEeccccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~ 57 (761)
.+.+|+|+|++|+||||++.+|+..+ + .....|+.|.++
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56799999999999999999987654 3 566778888764
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.044 Score=61.35 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=32.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~ 58 (761)
..+.+++++|++|+||||++.+|+..+ +.....++.|.++-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 356799999999999999999988654 34566788888753
No 295
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.00 E-value=0.0053 Score=68.02 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=25.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
....+++|+|||||||||+|++|+..++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999876
No 296
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.99 E-value=0.0075 Score=62.71 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
..|.++++.|.||+||||+|+.+..+ ..+++.|.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~----~~~~~~d~ 43 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK----TLVLSFDM 43 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC----CEEEeccc
Confidence 34678999999999999999998532 34555554
No 297
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.97 E-value=0.014 Score=63.14 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+|+++|++|||||++|..|++.++ ..+|+.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~--~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN--AEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC--CcEEEechh
Confidence 589999999999999999999987 456777764
No 298
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.91 E-value=0.017 Score=70.49 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=40.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~ 72 (761)
.|.=|+|.|+||||||++|++++..++..+..++..++...+.+..+..+..+.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f 539 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIF 539 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHH
Confidence 345589999999999999999999999778777776665556665555444333
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.88 E-value=0.045 Score=62.23 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCCC-CCHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN-LEREQRTDF 96 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~tn-~~~~~R~~~ 96 (761)
..-++|.|+||+||||+|+.+++..+..+..++.... + .......++.+..... .+..+|||-.. +...+...+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~-~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L 112 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--G-VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL 112 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--c-HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence 3357789999999999999999988877766654221 1 0111222333332232 34557888743 344555555
Q ss_pred HHh
Q 004319 97 VKL 99 (761)
Q Consensus 97 ~~l 99 (761)
+..
T Consensus 113 L~~ 115 (413)
T PRK13342 113 LPH 115 (413)
T ss_pred HHH
Confidence 555
No 300
>PHA02244 ATPase-like protein
Probab=95.85 E-value=0.024 Score=63.14 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=44.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc--ccc-CC---CCCcHHHHHHHHHHHHHCCCcEEEeCCCCCH
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQD--TIN-KG---KSGTKVQCLTSASSALKKGKSVFLDRCNLER 90 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D--~i~-~~---~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~ 90 (761)
|+|.|+||+|||++|+.++..++.++..++.. .+. .+ ..+.+. ...+.++++.|..+|||-.+.-.
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFKKGGLFFIDEIDASI 193 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccccc--chHHHHHhhcCCEEEEeCcCcCC
Confidence 77899999999999999999999888777632 110 01 011111 12345567889999999977544
No 301
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.84 E-value=0.036 Score=59.89 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-------~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
-+++.|+||+||||+|+.+++.+. ..+..++.+.+.....+....-...+.+. ..|..++||-..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a~~gvL~iDEi~ 131 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-AMGGVLFIDEAY 131 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-ccCcEEEEechh
Confidence 588999999999999988776542 13556666555433333222211111221 235567888743
No 302
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.84 E-value=0.051 Score=51.83 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQD 54 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D 54 (761)
+++|+|+||+||||++..++.... ....+++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 478999999999999999976652 344455543
No 303
>PRK04195 replication factor C large subunit; Provisional
Probab=95.82 E-value=0.05 Score=63.16 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=30.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
+..++|.|+||+||||+|+.+++.++..+..++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 678999999999999999999999986666665533
No 304
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.019 Score=66.69 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=46.4
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~ 76 (761)
..+.-++|.||||+|||.+|++++..++.++..+..-.+-..|.+..+..++.+.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH
Confidence 45668999999999999999999998886676666667777788877776655554444
No 305
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.81 E-value=0.018 Score=63.38 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=41.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
+..+++.|+||+||||+|+.+++.++..+..++...+.. ...+..+...+..+..++||-..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l~~~~vl~IDEi~ 112 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNLEEGDVLFIDEIH 112 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhcccCCEEEEecHh
Confidence 446889999999999999999999885554444332211 11222333445667778888744
No 306
>PRK08116 hypothetical protein; Validated
Probab=95.80 E-value=0.025 Score=60.59 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC----CCcHHHHHHHHHHHHHCCCcEEEeCCC---CC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRCN---LE 89 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~----~~~~~~~~~~~~~~L~~g~~VIID~tn---~~ 89 (761)
..-++|.|++|+|||.+|.+++..+ +..+..++...+.+.. ......-...+.+.+..-..+|||... .+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t 193 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT 193 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence 3458999999999999999998764 4455556654432110 000001112344556666788999953 23
Q ss_pred HHHHHHHHHh--CCC-CceEEEEEEeCCHHHHHHHH
Q 004319 90 REQRTDFVKL--GGP-EVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 90 ~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~R~ 122 (761)
......+..+ ..+ .....+|--+.+.+.+..+.
T Consensus 194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~ 229 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQY 229 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 3344444444 211 11234555677777765544
No 307
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.77 E-value=0.011 Score=68.72 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=30.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.|.=++|.||||+|||++|+.++...+.++..++...+
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 34458999999999999999999998877766665444
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.022 Score=64.12 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=32.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc-------CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~-------~~~~~~I~~D~i~ 57 (761)
..|.+|+++|++|+||||.+.+|+..+ +.....++.|.++
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 357899999999999999999998754 2456678888764
No 309
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.73 E-value=0.02 Score=61.84 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=39.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
.+..++|.|+||+||||+|+.++..++..+..+....+. .... +......+..+..++||-..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~-l~~~l~~~~~~~vl~iDEi~ 91 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-----KPGD-LAAILTNLEEGDVLFIDEIH 91 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-----Cchh-HHHHHHhcccCCEEEEehHh
Confidence 344588999999999999999999987554443322111 1111 12223345666778888743
No 310
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=95.72 E-value=0.019 Score=64.08 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=47.3
Q ss_pred cCcEEEEecCCCCCCceEEEEeCCCCCCChh-cCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC---cccc
Q 004319 582 SDDVVVLNDLYPKAQKHILVLSRFDGLDRLA-DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP---SMRQ 657 (761)
Q Consensus 582 dd~~vai~D~~Pka~~H~LVIPk~~hi~~l~-dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p---Sv~H 657 (761)
+...+++-..+|...+|+|+||+. ...+- -++. .+...+..++.+... ..|++||+.-- |++|
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~--~~~lPQ~i~~-------~~l~la~~~a~~~~~----p~frvgYNSlGA~ASvNH 234 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRV--LDCLPQRIDP-------DSFLLALYMAAEANN----PYFRVGYNSLGAFATINH 234 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCc--ccCCCeEecH-------HHHHHHHHHHHhcCC----CcEEEEecCCccccCcce
Confidence 344578889999999999999983 22222 2333 233334444443322 24899999743 9999
Q ss_pred eeeeeecCC
Q 004319 658 LHLHVISQD 666 (761)
Q Consensus 658 LHlHVIs~d 666 (761)
||+|....+
T Consensus 235 LHFQa~yl~ 243 (403)
T PLN03103 235 LHFQAYYLA 243 (403)
T ss_pred eeeeecccC
Confidence 999988753
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.66 E-value=0.0094 Score=62.75 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=21.8
Q ss_pred EEcCCCCcHHHHHHHHHHHcC---CCeEEEecc
Q 004319 25 MVGAPGSGKSTFCEHVMRSSA---RPWARICQD 54 (761)
Q Consensus 25 LvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D 54 (761)
++|++|||||||++.+.+-+. +....||.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 589999999999999887654 566677754
No 312
>PRK08727 hypothetical protein; Validated
Probab=95.66 E-value=0.099 Score=54.75 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
..++|.|++|+|||+++..+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998654
No 313
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.067 Score=59.77 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|+||+||||+|+.+++.+.
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3466889999999999999999998875
No 314
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.052 Score=62.82 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-|..++++|+||+||||+|+.+++.++
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998865
No 315
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.065 Score=61.76 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=58.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe---EEEe--------------ccccc-CCC-CCcHH---HHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW---ARIC--------------QDTIN-KGK-SGTKV---QCLTSASSALK 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~---~~I~--------------~D~i~-~~~-~~~~~---~~~~~~~~~L~ 76 (761)
-+..++++|+||+||||+|+.+++.++... ...| .|.+. +.. ....+ +..+.+...-.
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~ 118 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM 118 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhh
Confidence 356789999999999999999999876210 0000 11111 100 00011 11122221111
Q ss_pred --CCCcEEEeCCC-CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 77 --KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 77 --~g~~VIID~tn-~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
..+.+|||-.. ++......+++. .+....+.+|......+.+..++.-|-
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 23468888743 444555666666 655555666655555566666666664
No 316
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.58 E-value=0.088 Score=59.06 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCCCCC----------------cHHHHHHHHHHHHHCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSG----------------TKVQCLTSASSALKKG 78 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~~~~----------------~~~~~~~~~~~~L~~g 78 (761)
..+|+|+||.|.||||...+|+..+. ....+|..|.+|-|... ....-+..+...++.-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 67999999999999998888887754 45678999999754321 1122335556667777
Q ss_pred CcEEEeCCCCCHH---HHHHHHHh
Q 004319 79 KSVFLDRCNLERE---QRTDFVKL 99 (761)
Q Consensus 79 ~~VIID~tn~~~~---~R~~~~~l 99 (761)
+.|+||....+.. ....+..+
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~ 306 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKEL 306 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHH
Confidence 8899999666654 44444444
No 317
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.56 E-value=0.026 Score=64.12 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=30.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.-++|+|+||+||||+|+.|++.++.++..++...+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999999877877776554
No 318
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.55 E-value=0.0088 Score=61.97 Aligned_cols=58 Identities=28% Similarity=0.476 Sum_probs=37.6
Q ss_pred EEEEcCCCCcHHHHHHHH---HHHcCCCeEEEecccccCCCC----CcHHHH--HHHHHHHHHCCCc
Q 004319 23 VIMVGAPGSGKSTFCEHV---MRSSARPWARICQDTINKGKS----GTKVQC--LTSASSALKKGKS 80 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L---~~~~~~~~~~I~~D~i~~~~~----~~~~~~--~~~~~~~L~~g~~ 80 (761)
-+++|||||||||++... ....++++..+|.|--.++.. .+..+. ...+.+.++-|.+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPN 71 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPN 71 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCc
Confidence 578999999999998764 456678888888876544332 122222 2455555665543
No 319
>PRK06893 DNA replication initiation factor; Validated
Probab=95.54 E-value=0.12 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..++|.|+||+|||+++..++..+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998764
No 320
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.54 E-value=0.026 Score=65.62 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.|.=++|.||||+|||++|+.++..++
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 345689999999999999999999876
No 321
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.06 Score=65.17 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=46.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALK 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~ 76 (761)
.+.+|+|+|++|+||||.+.+|+..+ + .....++.|..+-+.. .+... +..+.+.+.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc
Confidence 35799999999999999999988654 2 3456677777642110 11122 233344555
Q ss_pred CCCcEEEeCCCCCH
Q 004319 77 KGKSVFLDRCNLER 90 (761)
Q Consensus 77 ~g~~VIID~tn~~~ 90 (761)
..+.||||......
T Consensus 263 ~~D~VLIDTAGRs~ 276 (767)
T PRK14723 263 DKHLVLIDTVGMSQ 276 (767)
T ss_pred CCCEEEEeCCCCCc
Confidence 56778999966443
No 322
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.026 Score=66.71 Aligned_cols=37 Identities=24% Similarity=0.568 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
.++.|+||||.|||++++.+++.+++.|++++..=++
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr 387 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR 387 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccc
Confidence 5899999999999999999999999999999975554
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.48 E-value=0.13 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+|+++|++||||||+.+.+.....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999999877654
No 324
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.46 E-value=0.019 Score=64.81 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~ 57 (761)
..|.||.|.|++||||||+++.|...+. .....|+.|++.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4789999999999999999999976553 235556666653
No 325
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.45 E-value=0.029 Score=68.44 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=43.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~ 85 (761)
.+.-|+|.|+||+||||+++.++..++..+..++...+.....+.....+..+.+..... ..++||-
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDE 279 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDE 279 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 456789999999999999999999988777777765554444444333333222222222 2356665
No 326
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.37 E-value=0.015 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...+|+|.|..|||||||++.+++.++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999999987
No 327
>PRK05642 DNA replication initiation factor; Validated
Probab=95.37 E-value=0.075 Score=55.71 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
..++|+|++|+|||.+++.+...+ +....+++.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 468999999999999999987542 344555665444
No 328
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.36 E-value=0.041 Score=58.17 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCc---HHHHHHHHHHHHHCCCcEEEeCCCCC---HH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGT---KVQCLTSASSALKKGKSVFLDRCNLE---RE 91 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~---~~~~~~~~~~~L~~g~~VIID~tn~~---~~ 91 (761)
..++|.|+||+|||+++.+++..+ +..+..++..++....... ...-...+.+.+..-..+|||..... ..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~ 179 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY 179 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHH
Confidence 478999999999999999998776 3445555543332100000 00111234455666667899985433 23
Q ss_pred HHHHHHHh--CCCC-ceEEEEEEeCCHHHHHHHH
Q 004319 92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 92 ~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~R~ 122 (761)
....+..+ .++. ....+|--+.+.+.+.+++
T Consensus 180 ~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~ 213 (244)
T PRK07952 180 EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL 213 (244)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHh
Confidence 33344444 3322 3345666677777766544
No 329
>PRK04296 thymidine kinase; Provisional
Probab=95.36 E-value=0.13 Score=52.24 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec--ccc------cC--CC------CCcHHHHHHHHHHHHHCC--C
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--DTI------NK--GK------SGTKVQCLTSASSALKKG--K 79 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~--D~i------~~--~~------~~~~~~~~~~~~~~L~~g--~ 79 (761)
.+++++|+||+||||++..++..+ +....++.. |.- .. +. .......+..+.+ ..+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d 80 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKID 80 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCC
Confidence 589999999999999999987665 334444422 221 00 10 0011222233322 222 3
Q ss_pred cEEEeCCCCC-HHHHHHHHHh-CCCCceEEEEEEeC
Q 004319 80 SVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDL 113 (761)
Q Consensus 80 ~VIID~tn~~-~~~R~~~~~l-~~~~~~v~vV~Ld~ 113 (761)
.||||-..+- .++...+++. +..+..+.+.-++.
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4899986544 4556667777 77787666666553
No 330
>PLN02796 D-glycerate 3-kinase
Probab=95.32 E-value=0.021 Score=63.02 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=24.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..|.+|.|+|++||||||+++.|...+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4689999999999999999999987654
No 331
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.32 E-value=0.011 Score=59.57 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=55.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEeccccc----CCCC-CcHHHHHHHHHHHHHCCCcEEEeCCCCCH-
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTIN----KGKS-GTKVQCLTSASSALKKGKSVFLDRCNLER- 90 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~----~~~~-~~~~~~~~~~~~~L~~g~~VIID~tn~~~- 90 (761)
..-++|.|+||+|||.+|..++.. .+....+++.+++. .... ... ....+.+..-..+|||......
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~----~~~~~~l~~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSY----EELLKRLKRVDLLILDDLGYEPL 122 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTH----CHHHHHHHTSSCEEEETCTSS--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccch----hhhcCccccccEecccccceeee
Confidence 456999999999999999998754 34556666654442 1111 111 2234556677889999965544
Q ss_pred --HHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 91 --EQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 91 --~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
..+..+.++ .+++-...+|--+.+.+.+.+..-.|
T Consensus 123 ~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 123 SEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR 161 (178)
T ss_dssp -HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-----
T ss_pred cccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc
Confidence 333333333 22222345666677777777666544
No 332
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.03 Score=65.50 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=44.4
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~ 73 (761)
..|.=|++-|||||||||+|++++...+..|.-|..-++...|.+..+..+..+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~ 521 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFR 521 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHH
Confidence 46778999999999999999999999887787777777777777776665544443
No 333
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.27 E-value=0.025 Score=58.15 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=39.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
..+..++|+|++|+||||+|+.+..... ..+..++.+.+.... ..+...+.....+|||...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~ 100 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVE 100 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChh
Confidence 3456899999999999999999987643 345556654442110 1122333444567888854
No 334
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=95.27 E-value=0.15 Score=50.10 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred EEEEEcccccccccCCccccEEEeCCCCCCcCCC-ChhhHHHHHhhcH--HHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-GGVNAAIFSAAGP--ALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (761)
Q Consensus 345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~-gGV~~AI~~aAG~--~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (761)
|+.++||+|+..... .+..+||+..|..-. .| ||+++||.++.-. ..-+.|.+. +.+.-|++.+++.......
T Consensus 2 I~yv~GD~~~p~~~~-~~~~iI~H~cN~~G~-WG~gGia~al~~k~p~~~~~Y~~~~~~-~dl~LG~~~li~v~~~~~~- 77 (152)
T cd03331 2 VRYVYGDVTHPSAVC-AEDAIIVHCVDDSGH-WGRGGLFTALEKRSDQPRKAYELAGKM-KDLHLGDLHLFPIDDKNSR- 77 (152)
T ss_pred eEEEeCccCCCCccC-CCCeEEEEEECCCCC-CCcchHHHHHHHhCCcHHHHHHHHHhc-CCCccccEEEEEeccccCC-
Confidence 678899999985210 124699999999988 77 7999999998732 222234443 5677899999885321111
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccc
Q 004319 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEK 476 (761)
Q Consensus 422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a----~siaf~~~~ 476 (761)
.-+-.+|...++....+..+ ...-....|++|...+-..| +||.+|.|.
T Consensus 78 -~~~~~~va~l~~q~~~~~~~-----~~~~~~~aL~~~L~~~~~~a~~~~~sVhmPrIg 130 (152)
T cd03331 78 -LKGPDWVALIVAQHRDKSNP-----LSGIKLSALEKGLKKIYFAAKQKSASVHLPRIG 130 (152)
T ss_pred -CCCCeEEEEEEeEccCCCCC-----CCccCHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 12237888889887655422 11234566777666665544 356666554
No 335
>CHL00176 ftsH cell division protein; Validated
Probab=95.27 E-value=0.028 Score=67.22 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=30.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
|.-++|.|+||+|||++|+.++...+.++..++...+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f 252 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEF 252 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHH
Confidence 4569999999999999999999998877766655443
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.25 E-value=0.19 Score=50.53 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=58.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe-cccccC---CC---------C--CcHHHHHHHHHHHHHCCCcE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINK---GK---------S--GTKVQCLTSASSALKKGKSV 81 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~-~D~i~~---~~---------~--~~~~~~~~~~~~~L~~g~~V 81 (761)
...+++++|++||||||+.+.|...... ....+. .+.+.. .. . .......+.+...++....+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3468999999999999999999876541 122221 111110 00 0 01112335556667777777
Q ss_pred EEeCCCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 82 FLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
|+=+.-...+.+. +++. ..+..-+..+.- .+......|+..+...
T Consensus 104 i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha-~s~~~~~~Rl~~~~~~ 150 (186)
T cd01130 104 IIVGEVRGGEALD-LLQAMNTGHPGGMTTIHA-NSAEEALTRLELLPSN 150 (186)
T ss_pred EEEEccCcHHHHH-HHHHHhcCCCCceeeecC-CCHHHHHHHHHHHHhh
Confidence 6666556655443 4433 333212222332 2445577888877653
No 337
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.25 E-value=0.083 Score=51.03 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=51.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEecc-ccc--CCCCCcHHHHHHHHHHHHHCCCcEEEeC--CCCCHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQD-TIN--KGKSGTKVQCLTSASSALKKGKSVFLDR--CNLERE 91 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~D-~i~--~~~~~~~~~~~~~~~~~L~~g~~VIID~--tn~~~~ 91 (761)
+-.++.|+|++|||||||.+.++..... .-..++.. .+. .....-..+....++..+...+.+|+|- .+++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 3468999999999999999999765431 11112110 000 0011112333455556666777788988 567778
Q ss_pred HHHHHHHh-CCCC
Q 004319 92 QRTDFVKL-GGPE 103 (761)
Q Consensus 92 ~R~~~~~l-~~~~ 103 (761)
.+..+.++ ++.+
T Consensus 105 ~~~~l~~~l~~~~ 117 (144)
T cd03221 105 SIEALEEALKEYP 117 (144)
T ss_pred HHHHHHHHHHHcC
Confidence 88888887 5543
No 338
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.19 Score=50.97 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCccchhhhhhhh-cccCcc-EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe----------ccc------ccC---C
Q 004319 1 MDTDIDDTCKAKDE-EKKWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC----------QDT------INK---G 59 (761)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~-~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~----------~D~------i~~---~ 59 (761)
|++-....|..... ....+| .+.++-|--|+|||||.+.+.......|.++. .+. .+. .
T Consensus 1 ma~~~~~sc~~~~~~~eg~~pkr~~~iEGNIa~GKsTfl~~~~~~t~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep~R 80 (244)
T KOG4235|consen 1 MATSPKESCSSSSGLHEGTGPKRLSIIEGNIAVGKSTFLNFFLNKTYEEWEVLTEPVAKWQNVQGANANLLDMMYREPAR 80 (244)
T ss_pred CCCCcccccCCccccccCCCCceeEEEecccccchHHHHHHHHhccCccceecCchHHHHhccccccccHHHHHhhchHh
Confidence 56666667765332 222333 56669999999999999988877553332221 111 110 1
Q ss_pred CCCcHH--HHHHHHHHHHH--CC--CcEEEeCCCCCHHH-------------------HHHHHHh--CCCCceE-EEEEE
Q 004319 60 KSGTKV--QCLTSASSALK--KG--KSVFLDRCNLEREQ-------------------RTDFVKL--GGPEVDV-HAVVL 111 (761)
Q Consensus 60 ~~~~~~--~~~~~~~~~L~--~g--~~VIID~tn~~~~~-------------------R~~~~~l--~~~~~~v-~vV~L 111 (761)
|.-+.. .++.++...+. .| ..-|.+...++..+ -+.|.+. +..++.+ .+|||
T Consensus 81 ws~tfQtYv~ltrL~~~~~p~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYL 160 (244)
T KOG4235|consen 81 WSYTFQTYVFLTRLKVQLEPFNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYL 160 (244)
T ss_pred heehhhHHHHHHHHHHHhcCCCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEEEe
Confidence 111111 12233332222 12 11233333222211 1234444 3333332 57999
Q ss_pred eCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319 112 DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (761)
Q Consensus 112 d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~ 144 (761)
.+++|+|.+|+..|.+.+.. .+|-.-+...
T Consensus 161 rasPetc~~Ri~~R~R~EE~---gipL~YLe~L 190 (244)
T KOG4235|consen 161 RASPETCYKRIYLRAREEEK---GIPLKYLEAL 190 (244)
T ss_pred ecChHHHHHHHHHHhhhhhc---CCcHHHHHHH
Confidence 99999999999999876433 5665554444
No 339
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.20 E-value=0.02 Score=62.80 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
-|+|.|+||+||||+++.+++.++.++..|+.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~ 97 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNL 97 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999999977777754
No 340
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.18 E-value=0.11 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.+++.|+||+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988763
No 341
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.16 E-value=0.015 Score=59.98 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~ 42 (761)
+-.+++++||+|||||||.|.+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 446899999999999999999863
No 342
>PRK06921 hypothetical protein; Provisional
Probab=95.12 E-value=0.067 Score=57.30 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCC-------
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL------- 88 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~------- 88 (761)
..-++|.|+||+|||+++.+++..+ +..+..+....+........ .......+.+..-..+|||....
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~ 195 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMKKVEVLFIDDLFKPVNGKPR 195 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhcCCCEEEEeccccccCCCcc
Confidence 4568999999999999999988764 33334444322211000000 11122334455667789999622
Q ss_pred -CHHHHHHHHHh--CCC-CceEEEEEEeCCHHHHHH
Q 004319 89 -EREQRTDFVKL--GGP-EVDVHAVVLDLPAKLCIS 120 (761)
Q Consensus 89 -~~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~ 120 (761)
+......+..+ ..+ .-...+|--+.+.+.+..
T Consensus 196 ~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 196 ATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLD 231 (266)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhh
Confidence 23333344444 221 112335556676666553
No 343
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.11 E-value=0.023 Score=60.56 Aligned_cols=32 Identities=38% Similarity=0.525 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
-++|.|+||+|||++|+.+++.++.++..++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~ 54 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLING 54 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeC
Confidence 46789999999999999999988888877753
No 344
>PLN03025 replication factor C subunit; Provisional
Probab=95.11 E-value=0.092 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.|. +++.|+||+||||+|+.+++.+
T Consensus 34 ~~~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 34 MPN-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred Cce-EEEECCCCCCHHHHHHHHHHHH
Confidence 344 5789999999999999999875
No 345
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.03 E-value=0.022 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEE
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARI 51 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I 51 (761)
|+|+|.||+||||+++.|++. + +..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g--~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G--YPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence 789999999999999999988 6 4445
No 346
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.01 E-value=0.23 Score=56.23 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i 56 (761)
..++|.|++|+|||+++++++..+ +..+.+++.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 358999999999999999988654 334556665443
No 347
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.99 E-value=0.04 Score=60.40 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=43.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSAL 75 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L 75 (761)
.-|+|+||||+|||-+|-.+++.+| .+|+-++...++..+....+.+.+++++++
T Consensus 66 rgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraI 122 (450)
T COG1224 66 RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAI 122 (450)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhh
Confidence 4799999999999999999999999 577778888887766665555555555555
No 348
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.14 Score=60.80 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCe----EE----E---e-----------ccccc-CCC-CCcHHHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW----AR----I---C-----------QDTIN-KGK-SGTKVQCLTSAS 72 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~----~~----I---~-----------~D~i~-~~~-~~~~~~~~~~~~ 72 (761)
..-+..++++|++|.||||+|+.|++.+...- .- - | .|.+. +.. ....++..+.+.
T Consensus 35 gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie 114 (700)
T PRK12323 35 QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLD 114 (700)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHH
Confidence 34567899999999999999999999876200 00 0 0 02221 100 011122222222
Q ss_pred HHH---H--CCCcEEEeCCC-CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 73 SAL---K--KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 73 ~~L---~--~g~~VIID~tn-~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
... . ..+.+|||-.. ++......+++. .+...++.+|........+...+..|-
T Consensus 115 ~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred HHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 111 1 23568888743 444555667777 665556667777666666666665554
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.98 E-value=0.089 Score=54.03 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=28.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
...++++.|+|||||||||.+++... +....+++.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 45799999999999999999988653 34555666543
No 350
>PF05729 NACHT: NACHT domain
Probab=94.96 E-value=0.02 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+++|.|.||+||||+++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 789999999999999999886643
No 351
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.033 Score=61.14 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=40.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~ 77 (761)
.|.=|+|-||||+|||-+|++.+...+..|.++....+-+...+.-..+.+.+.+..+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre 242 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELARE 242 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhh
Confidence 45669999999999999999999998877777766555444444444444444443333
No 352
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.94 E-value=0.053 Score=56.81 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=40.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
+..++++.|+|||||||||.+++.. .+....+++.+.-.+..........-.+......|+..|+|...
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~ 91 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFT 91 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccc
Confidence 4579999999999999999987643 34556666654321000000000001123445667788888743
No 353
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.94 E-value=0.092 Score=59.97 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEeccccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN 57 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~ 57 (761)
..+++++|++|+||||++.+|+..+ +.....++.|..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 3589999999999999999887543 2456778888754
No 354
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.14 Score=57.89 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.4
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|+||+||||+|+.+++.+.
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466789999999999999999998875
No 355
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.063 Score=58.45 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=31.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.+.+|+|+||.|||||-+|-.|+++++ ..+||.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~--~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLG--GEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcC--CcEEecchh
Confidence 467999999999999999999999999 667887766
No 356
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.22 Score=58.61 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-+..+++.|++|+||||+|+.+++.+.
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998765
No 357
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.17 Score=59.02 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=44.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHHC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKS-----------------GTKVQCLTSASSALKK 77 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~~ 77 (761)
..+|+|+|++|+||||++.+|+..+ +..+..++.|.++-+.. .+... +..+.+.+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~-L~~aL~~l~~ 428 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES-LLDLLERLRD 428 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH-HHHHHHHhcc
Confidence 4689999999999999999988643 23466778877642210 01111 2233344455
Q ss_pred CCcEEEeCCCCCH
Q 004319 78 GKSVFLDRCNLER 90 (761)
Q Consensus 78 g~~VIID~tn~~~ 90 (761)
.+.||||...+..
T Consensus 429 ~DLVLIDTaG~s~ 441 (559)
T PRK12727 429 YKLVLIDTAGMGQ 441 (559)
T ss_pred CCEEEecCCCcch
Confidence 6678888876654
No 358
>PRK08181 transposase; Validated
Probab=94.88 E-value=0.056 Score=58.00 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=56.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHH-HHHHHHHHHHHCCCcEEEeCCC---CCHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN---LEREQR 93 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~-~~~~~~~~~L~~g~~VIID~tn---~~~~~R 93 (761)
.-++|+|+||+|||.+|..++... +..+.+++...+.+....... .-.....+.+..-..+|||... .+....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~ 186 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAET 186 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHH
Confidence 359999999999999999987543 434444554333211000000 0112233455666778999843 334444
Q ss_pred HHHHHh--CCCCceEEEEEEeCCHHHHHHHH
Q 004319 94 TDFVKL--GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 94 ~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
..+.++ ..+.-...+|--+.+...+..+.
T Consensus 187 ~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 187 SVLFELISARYERRSILITANQPFGEWNRVF 217 (269)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCHHHHHHhc
Confidence 555555 22222344555677777665544
No 359
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.87 E-value=0.12 Score=62.24 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=58.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---EEe--------------ccccc-CCC-CCcHHHHHHHHHHHH---
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---RIC--------------QDTIN-KGK-SGTKVQCLTSASSAL--- 75 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~---~I~--------------~D~i~-~~~-~~~~~~~~~~~~~~L--- 75 (761)
.-+..++|+|++|+||||+++.|++.++.... .-| .|.+. +.. ....+++.+.+....
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P 115 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP 115 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhcc
Confidence 34678899999999999999999998752100 000 01111 000 011122222222211
Q ss_pred --HCCCcEEEeCCCC-CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 76 --KKGKSVFLDRCNL-EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 76 --~~g~~VIID~tn~-~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
...+.+|||-... +......+++. .+..-++.+|+.......+..-+..|-
T Consensus 116 ~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 116 VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 1235688988443 33444566666 555455666666665555555555454
No 360
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.86 E-value=0.04 Score=61.12 Aligned_cols=53 Identities=15% Similarity=0.324 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASS 73 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~ 73 (761)
..|+|.|+||+|||.+|-.++++++ .+|..++.-+++..+....+.+.+.+++
T Consensus 51 r~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa~Rr 105 (398)
T PF06068_consen 51 RAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQAFRR 105 (398)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHHHHC
T ss_pred cEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHHHHH
Confidence 5789999999999999999999999 6788888888876665544444444443
No 361
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.089 Score=60.27 Aligned_cols=126 Identities=20% Similarity=0.308 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL- 99 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l- 99 (761)
=|+|.||||+|||-+||++-+.++ +.-.+++.-.+-+...+..++-++. ...|+ -++|+.+
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~----------LFaDA-------EeE~r~~g 320 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRK----------LFADA-------EEEQRRLG 320 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHH----------HHHhH-------HHHHHhhC
Confidence 389999999999999999999887 3334556555544444443332211 11122 3456556
Q ss_pred CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc---CChhhHHHHHHH
Q 004319 100 GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC---QNENDVQAALDT 175 (761)
Q Consensus 100 ~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv---~~~~ei~~~l~~ 175 (761)
...+. ++|.||-=+.+|.+|=..+... .+...++++.+.+..-- |....|.++ +..+-+++++.+
T Consensus 321 ~~SgL--HIIIFDEiDAICKqRGS~~g~T------GVhD~VVNQLLsKmDGV---eqLNNILVIGMTNR~DlIDEALLR 388 (744)
T KOG0741|consen 321 ANSGL--HIIIFDEIDAICKQRGSMAGST------GVHDTVVNQLLSKMDGV---EQLNNILVIGMTNRKDLIDEALLR 388 (744)
T ss_pred ccCCc--eEEEehhhHHHHHhcCCCCCCC------CccHHHHHHHHHhcccH---HhhhcEEEEeccCchhhHHHHhcC
Confidence 55544 4556666667787765444432 57899999998876422 223345555 234666666654
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.85 E-value=0.019 Score=59.45 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=37.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~t 86 (761)
+..++++.|+||||||+|+.+++... +....+++.+.-.+.........--.+......|+..++|..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 45799999999999999999976432 666667775432100000000000123445556667777763
No 363
>PRK09183 transposase/IS protein; Provisional
Probab=94.84 E-value=0.074 Score=56.71 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHH--HHHHHHHHHHHCCCcEEEeCCCC---CHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCNL---EREQ 92 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~--~~~~~~~~~L~~g~~VIID~tn~---~~~~ 92 (761)
..++|+|+||+|||++|..+... .+..+..++...+......... .......+.+..-..+|||...+ ....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~ 182 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEE 182 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChHH
Confidence 46889999999999999998654 2333444443222110000000 01112222234445689998653 3344
Q ss_pred HHHHHHh--CCCCceEEEEEEeCCHHHHHHHH
Q 004319 93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 93 R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
...+..+ ..+.-...+|--+.+.+.+.+..
T Consensus 183 ~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 183 ANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCCHHHHHHHh
Confidence 4345554 22222234555677777666554
No 364
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.84 E-value=0.06 Score=55.76 Aligned_cols=35 Identities=29% Similarity=0.638 Sum_probs=26.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~ 53 (761)
...++++.|+||+|||||+.+++.. .+.....++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4579999999999999999987632 2334555554
No 365
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.84 E-value=0.28 Score=56.48 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
-++|.|++|+|||++++.++..+ +..+..++.+.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 47899999999999999998754 344555665443
No 366
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.83 E-value=0.12 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+++.|+||+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36999999999999999998875
No 367
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.82 E-value=0.27 Score=56.51 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i 56 (761)
-++|.|+||+|||++++.++.... ..+.+++.+.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 589999999999999999987652 33445555443
No 368
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.81 E-value=0.23 Score=51.56 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=58.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEeccccc--------C-------------------------CCCCc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN--------K-------------------------GKSGT 63 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~--------~-------------------------~~~~~ 63 (761)
.++|.|++|+|||.+..++.... +..+.+++.+.+. + +....
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence 47899999999999999986542 2345566543321 0 00011
Q ss_pred HHHHHHHHHHHHHCCCcEEEeC-CCCCH--HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHH
Q 004319 64 KVQCLTSASSALKKGKSVFLDR-CNLER--EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (761)
Q Consensus 64 ~~~~~~~~~~~L~~g~~VIID~-tn~~~--~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~v 140 (761)
...++..+......|+.+|+-+ ..... ....+++..-..|. ++-+..|.+....++.++.....+ ..+++++
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl---~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v 190 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL---VVELQPPDDEDRRRILQKKAKERG--IELPEEV 190 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE---EEEE----HHHHHHHHHHHHHHTT----S-HHH
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc---hhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHH
Confidence 1234455555666777776654 11111 11222222212333 455666666555555544332221 2477777
Q ss_pred HHHHHhhh
Q 004319 141 VNRMLQKK 148 (761)
Q Consensus 141 I~r~~~~~ 148 (761)
+.-+.+.+
T Consensus 191 ~~~l~~~~ 198 (219)
T PF00308_consen 191 IEYLARRF 198 (219)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777654
No 369
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.19 Score=59.92 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..++++|++|+||||+|+.+++.++
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999999876
No 370
>PF13245 AAA_19: Part of AAA domain
Probab=94.79 E-value=0.028 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMR 42 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~ 42 (761)
..++++.|+|||||||++.++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45788899999999965555443
No 371
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.77 E-value=0.033 Score=61.51 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=30.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
.+.+.+|.++|+||||||||+..|...+ +....+++.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 5678899999999999999999976554 34566666665
No 372
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.77 E-value=0.15 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
...|+++|++|||||||.+++...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999998753
No 373
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.76 E-value=0.066 Score=59.09 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC----CCcHHHHHHHHHHHHHCCCcEEEeCCC---CCH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRCN---LER 90 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~----~~~~~~~~~~~~~~L~~g~~VIID~tn---~~~ 90 (761)
.-++|.|++|+|||+++.+++..+ +..+..++.+.+.+.. ....... ....+.+..-..+|||... .+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIIDDlG~e~~t~ 262 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKEL-EEVYDLLINCDLLIIDDLGTEKITE 262 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhH-HHHHHHhccCCEEEEeccCCCCCCH
Confidence 569999999999999999998764 3445555554442110 0000000 1113555555778999842 334
Q ss_pred HHHHHHHHh--CCCC-ceEEEEEEeCCHHHHHHHH
Q 004319 91 EQRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 91 ~~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~R~ 122 (761)
.....+..+ ..+. -...+|--+.+.+.+..+.
T Consensus 263 ~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 445555555 2211 1234566677777665544
No 374
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.75 E-value=0.12 Score=52.01 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=48.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccc---cCC--CCCcHHHHHHHHHHHHHCCCcEEEeC--CCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTI---NKG--KSGTKVQCLTSASSALKKGKSVFLDR--CNLE 89 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i---~~~--~~~~~~~~~~~~~~~L~~g~~VIID~--tn~~ 89 (761)
+-.++.|+|++||||||+.+.++.... .....++.-.+ .+. ..+-..+.+..++..+.....+|+|- .+++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 345899999999999999999886432 11222221111 111 11122334455555566677788887 5666
Q ss_pred HHHHHHHHHh
Q 004319 90 REQRTDFVKL 99 (761)
Q Consensus 90 ~~~R~~~~~l 99 (761)
...+..+.++
T Consensus 104 ~~~~~~l~~~ 113 (177)
T cd03222 104 IEQRLNAARA 113 (177)
T ss_pred HHHHHHHHHH
Confidence 6777766555
No 375
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.75 E-value=0.27 Score=51.16 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=27.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~ 53 (761)
.-.+++|.|+||+|||||+..++... +.+..+++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 34699999999999999999876542 555666664
No 376
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.70 E-value=0.051 Score=57.62 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=24.6
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
....|.+|+++|..|||||||.++|-..+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 34578899999999999999999987554
No 377
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.68 E-value=0.2 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++||||||+.+.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 378
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.68 E-value=0.16 Score=53.56 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~ 46 (761)
..|.-++++|++||||||+...|...+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 35667899999999999999999877663
No 379
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.66 E-value=0.17 Score=59.19 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=24.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|++|+||||+|+.+++.++
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566899999999999999999999875
No 380
>PRK06526 transposase; Provisional
Probab=94.65 E-value=0.045 Score=58.22 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcH-HHHHHHHHHHHHCCCcEEEeCCCCC---HHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCNLE---REQ 92 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~-~~~~~~~~~~L~~g~~VIID~tn~~---~~~ 92 (761)
+.-++|+|+||+|||++|..+.... +..+..++...+.+...... ..........+..-..+|||...+. ...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~ 177 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEA 177 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHH
Confidence 3468999999999999999987653 32222233222210000000 0001111223444456899986543 444
Q ss_pred HHHHHHh--CCCCceEEEEEEeCCHHHHHHHH
Q 004319 93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 93 R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
...+..+ ..+.-...++.-+.|.+.+.+..
T Consensus 178 ~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~ 209 (254)
T PRK06526 178 ANLFFQLVSSRYERASLIVTSNKPFGRWGEVF 209 (254)
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHc
Confidence 4444444 22222234566677777655443
No 381
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.65 E-value=0.033 Score=55.84 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
++.++.++|++||||||+++++...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 382
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.65 E-value=0.038 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+...+|+|.|.-|||||||++.+++.++
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4457999999999999999999999987
No 383
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.082 Score=57.13 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=45.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL 75 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L 75 (761)
.|..++|.|+||.|||-+|+.+++..+..+..+....+-++..++...+++...+.+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA 221 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA 221 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH
Confidence 578999999999999999999999999888777877777777776655554433333
No 384
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.63 E-value=0.05 Score=54.06 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRS---SARPWARICQD 54 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D 54 (761)
+++|.|+||+|||+|+.+++.. .+....+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4789999999999999987653 34556666653
No 385
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.32 Score=57.71 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=61.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCC-------eE------E------Eeccccc-CCC-CCcHHHH---HHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-------WA------R------ICQDTIN-KGK-SGTKVQC---LTSASS 73 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~-------~~------~------I~~D~i~-~~~-~~~~~~~---~~~~~~ 73 (761)
.-+..+++.|++|+||||+|+.+++.+.-. +- . -+.|.+. ++. ....+.+ ...+..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~ 112 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY 112 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh
Confidence 356788999999999999999999886510 00 0 0112221 111 1111222 222211
Q ss_pred H--HHCCCcEEEeCC-CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 74 A--LKKGKSVFLDRC-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 74 ~--L~~g~~VIID~t-n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
. ....+.+|||.. .++...-..+++. .+..-.+++|++....+.+..-+..|.
T Consensus 113 ~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc 169 (584)
T PRK14952 113 APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 (584)
T ss_pred hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhc
Confidence 1 134567899985 3444555566666 665556677776666666666666664
No 386
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.027 Score=58.46 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=31.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~ 60 (761)
.-.+..|+||.||||||++..|+-..+ |.+...+.+.+|.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~~Ge 68 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGE 68 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEECCc
Confidence 456899999999999999999987655 6556666665554
No 387
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.22 Score=57.81 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=59.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC-------CeEE----------Eeccccc-CCC-CCcHHHH---HHHHHHH--
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-------PWAR----------ICQDTIN-KGK-SGTKVQC---LTSASSA-- 74 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~-------~~~~----------I~~D~i~-~~~-~~~~~~~---~~~~~~~-- 74 (761)
-+.-+++.|++|+||||+|+.+++.++- ++-. ...|.+. +.. ....+.+ ++.+...
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~ 113 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPI 113 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccc
Confidence 3567999999999999999999986531 0000 0112221 110 0111222 2221111
Q ss_pred HHCCCcEEEeCCC-CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 75 LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 75 L~~g~~VIID~tn-~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
....+.+|||... ++...-..+++. .+..-.+.+|+.....+-+...+..|-.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~ 168 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQ 168 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhe
Confidence 1234678999843 344455566666 5555556666666656666666766654
No 388
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.15 Score=59.49 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.1
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...+.+++++|+||+||||+|+.+++.+.
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999998764
No 389
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=94.60 E-value=0.26 Score=49.47 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=53.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------------CC--C--------------------CcH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GK--S--------------------GTK 64 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------------~~--~--------------------~~~ 64 (761)
||-|.+..|||++|+|++|++.++ +..++.+.+.+ .+ . ...
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg--~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG--YPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD 78 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT----EE-HHHHHHCT------------SS-HHH--HH---HHS-------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcC--CccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence 688999999999999999999999 55577644410 00 0 001
Q ss_pred HHHH---HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 65 VQCL---TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 65 ~~~~---~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..+. ..+...+....++||-+ .-..|+ ++... ++.-|+|..|.+...+|+.+|..
T Consensus 79 ~~~~~~~~~~i~~la~~~~~Vi~G------R~a~~i-l~~~~-~~l~V~i~A~~~~Rv~ri~~~~~ 136 (179)
T PF13189_consen 79 DKIFRAQSEIIRELAAKGNCVIVG------RCANYI-LRDIP-NVLHVFIYAPLEFRVERIMEREG 136 (179)
T ss_dssp -HHHHHHHHHHHHHHH---EEEES------TTHHHH-TTT-T-TEEEEEEEE-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCEEEEe------cCHhhh-hCCCC-CeEEEEEECCHHHHHHHHHHHcC
Confidence 1111 22333443334555556 122221 13322 45677888999999999999964
No 390
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.60 E-value=0.19 Score=61.91 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=61.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCC-------eEE------------Eeccccc-CC-CCCcHHHHHHHHHHH---
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP-------WAR------------ICQDTIN-KG-KSGTKVQCLTSASSA--- 74 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~-------~~~------------I~~D~i~-~~-~~~~~~~~~~~~~~~--- 74 (761)
-+..+++.|++|+||||+|+.|++.+.-. +-. -+.|.+. ++ .....+++.+...+.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~ 115 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFA 115 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999987510 000 0011111 11 111122222221111
Q ss_pred --HHCCCcEEEeC-CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 75 --LKKGKSVFLDR-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 75 --L~~g~~VIID~-tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
....+.+|||- -.++...-..++++ .+..-.+++|++....+.+..-+..|-.
T Consensus 116 p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~ 172 (824)
T PRK07764 116 PAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH 172 (824)
T ss_pred hhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence 12345688886 34455555667777 6666666777766666656655666643
No 391
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.58 E-value=0.051 Score=54.31 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEEecccccC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK 58 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~I~~D~i~~ 58 (761)
..++++||+|+|||.+|+.|++.+.. ++..++.-.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 47899999999999999999998873 666677655543
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.58 E-value=0.043 Score=50.68 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=24.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
-.++.|+|++||||||+++.+. .+ -..++.|++
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G--~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KR--KHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CC--eEEEeeEeH
Confidence 3689999999999999999987 22 234555544
No 393
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.56 E-value=0.038 Score=58.63 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=42.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
++-.++++.|.||||||+|+.+++.. .+.+...|+.+.-.........+..-........|...|+|...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~ 93 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL 93 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence 34579999999999999999997644 24556667665432111111111111223556778888888833
No 394
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.049 Score=65.40 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
|.=++|+||||+|||-+|++++.+.+.+|.-++.-++
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 4458999999999999999999999988876666444
No 395
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.51 E-value=0.21 Score=61.30 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=25.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..++++|+||+||||+|+.+++.++
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4567889999999999999999999876
No 396
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.50 E-value=0.031 Score=53.25 Aligned_cols=30 Identities=37% Similarity=0.643 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~ 52 (761)
|+|.|+||.||||+++.+++..+..+.+|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 689999999999999999999997777663
No 397
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.50 E-value=0.028 Score=55.36 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=19.5
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
....+.+++|.|++|+||||+.+++...+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445678999999999999999999876654
No 398
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.056 Score=61.90 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=32.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
-|.=|+|+||||.|||-+|++++-+.+.+|.+.+..++
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF 373 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF 373 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch
Confidence 46679999999999999999999999988876665444
No 399
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.45 E-value=0.069 Score=60.52 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=29.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~-~~I~~D~i 56 (761)
....|+|+|.+||||||++++|++.++..+ ..+.++.+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 456899999999999999999999988443 33444544
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.16 Score=57.72 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=44.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALK 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~ 76 (761)
...++.|+|++|+||||+..+|+..+ + .....+..|.++-+.. .+... ...+...+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~d-l~~al~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHH-HHHHHHHhc
Confidence 45699999999999999999998653 2 3344566666542211 11111 123344566
Q ss_pred CCCcEEEeCCCCCH
Q 004319 77 KGKSVFLDRCNLER 90 (761)
Q Consensus 77 ~g~~VIID~tn~~~ 90 (761)
....++||......
T Consensus 269 ~~d~VLIDTaGrsq 282 (420)
T PRK14721 269 GKHMVLIDTVGMSQ 282 (420)
T ss_pred CCCEEEecCCCCCc
Confidence 66778999855544
No 401
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=0.14 Score=58.63 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=28.0
Q ss_pred hhcccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 13 DEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 13 ~~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+....+.|.|+.++||||+||||+.+.|.+.+.
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 344567888999999999999999999988754
No 402
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.37 E-value=0.065 Score=56.06 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=25.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D 54 (761)
+..++++.|+||+||||||.+++... +....+++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34699999999999999987765433 3344555543
No 403
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.28 Score=57.27 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=24.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-+..++++|+||+||||+|+.+++.++
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 356799999999999999999999876
No 404
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=94.34 E-value=0.12 Score=56.20 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=29.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+.+|+|+||+|||||.+|-.|++..+ .+||.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA---EIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC---cEEeccHH
Confidence 34899999999999999999999843 67888766
No 405
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.34 E-value=0.029 Score=63.09 Aligned_cols=24 Identities=42% Similarity=0.701 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
=|++.|+||+||||||++|++-+.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHH
Confidence 389999999999999999987654
No 406
>PTZ00202 tuzin; Provisional
Probab=94.33 E-value=0.2 Score=56.93 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=27.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~ 52 (761)
.|.+++|+|++|+||||+++.+....+....+++
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vN 318 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVD 318 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEEC
Confidence 4569999999999999999999988774333333
No 407
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.32 E-value=0.48 Score=52.46 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-c--ccc--C--CC---------CC-cHHHHHHHHHHHHHCCCcEE
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-D--TIN--K--GK---------SG-TKVQCLTSASSALKKGKSVF 82 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D--~i~--~--~~---------~~-~~~~~~~~~~~~L~~g~~VI 82 (761)
...|+++|++|||||||.+.|....+....++.. | ++. . +. .+ ......+.+..+|+..-.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 4579999999999999999999877632222221 1 111 0 00 00 01123356677788777766
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
+=+--...+...-+..+ ..+..-+..+.-+- ......|+...-
T Consensus 240 ivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~s-~~~ai~Rl~~~~ 283 (332)
T PRK13900 240 IVGELRGAEAFSFLRAINTGHPGSISTLHADS-PAMAIEQLKLMV 283 (332)
T ss_pred EEEecCCHHHHHHHHHHHcCCCcEEEEEecCC-HHHHHHHHHHHH
Confidence 65655555543333333 33322234444333 344667876543
No 408
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.048 Score=56.19 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
++..+..|+||+|||||||.+.+-...
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 456799999999999999999886543
No 409
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.28 E-value=0.072 Score=64.05 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
=|+|+|+||+||||+++.++...+.++..++...+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~ 221 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 221 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh
Confidence 49999999999999999999999977776766544
No 410
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.26 E-value=0.31 Score=57.83 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i 56 (761)
.++|.|.+|+|||.|+..+.... +..+.+++.+.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 48999999999999999988754 234455655443
No 411
>PRK04328 hypothetical protein; Provisional
Probab=94.25 E-value=0.11 Score=55.02 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~t 86 (761)
...++++.|+||||||+||.+++.. .+....+++.+.-.+..........-.+...+..++..|+|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~ 92 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAF 92 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence 5679999999999999999987643 2345666665442110000000000113445566778888874
No 412
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.28 Score=47.62 Aligned_cols=79 Identities=28% Similarity=0.290 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEecccccCC--------------CCCcHHHHHHHHHHHHHCCCcEEEe
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINKG--------------KSGTKVQCLTSASSALKKGKSVFLD 84 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~D~i~~~--------------~~~~~~~~~~~~~~~L~~g~~VIID 84 (761)
.++.|+|++|||||||.+.+...+.. ....++...+... ..+-..+....+...+.....+|+|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999999999999999865431 1122222111110 0001122234444555566778888
Q ss_pred C--CCCCHHHHHHHHHh
Q 004319 85 R--CNLEREQRTDFVKL 99 (761)
Q Consensus 85 ~--tn~~~~~R~~~~~l 99 (761)
- .+++...+..+.++
T Consensus 106 Ep~~~lD~~~~~~l~~~ 122 (157)
T cd00267 106 EPTSGLDPASRERLLEL 122 (157)
T ss_pred CCCcCCCHHHHHHHHHH
Confidence 7 45556666666554
No 413
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.23 E-value=0.086 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
|+|+|+.||||||++++|....
T Consensus 4 imliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 8999999999999999997643
No 414
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.22 E-value=0.33 Score=47.75 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCC--------CC-----Cc--HHHHHHHHHHHHHCCCcEE
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKG--------KS-----GT--KVQCLTSASSALKKGKSVF 82 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~--------~~-----~~--~~~~~~~~~~~L~~g~~VI 82 (761)
-.++.|+|++|||||||.+.++.... ..-..++...+... .. .+ ..+.+..++..+...+.+|
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 35899999999999999999975533 11222332121110 00 01 1222344444455556678
Q ss_pred EeC--CCCCHHHHHHHHHh
Q 004319 83 LDR--CNLEREQRTDFVKL 99 (761)
Q Consensus 83 ID~--tn~~~~~R~~~~~l 99 (761)
+|- .+++...+..+.++
T Consensus 106 lDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 106 LDEPTAALTPAEVERLFKV 124 (163)
T ss_pred EECCCcCCCHHHHHHHHHH
Confidence 877 45666777766665
No 415
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.063 Score=59.17 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=41.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~ 72 (761)
..|.-|+|.||||+|||-+|++++++.+..+.-++...+-+.|+++.....+++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvF 179 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVF 179 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHH
Confidence 3677899999999999999999999999776555665665666665555544433
No 416
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=94.17 E-value=0.51 Score=49.50 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=72.6
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH----HHHHHHHHH-HCCCcEEEeCCCCCHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ----CLTSASSAL-KKGKSVFLDRCNLERE 91 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~----~~~~~~~~L-~~g~~VIID~tn~~~~ 91 (761)
.+.|.||++-|..||||....++|...+.-....+.. +. . .+.++ .+-..-+.| ..|+..|.|++-+...
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~--~~--~-pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~ 102 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA--LP--K-PSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRA 102 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe--CC--C-CCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhH
Confidence 3468999999999999999999999988743333322 10 0 01111 112222223 5677788888655541
Q ss_pred -------------HHH------HHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319 92 -------------QRT------DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (761)
Q Consensus 92 -------------~R~------~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~ 130 (761)
... .|-+. ...|+.+.=+||.++.++..+|+.+|...+.
T Consensus 103 lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~ 161 (230)
T TIGR03707 103 GVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPL 161 (230)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 111 22233 6679989999999999999999999987653
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.13 E-value=0.15 Score=58.97 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=30.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEeccccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~ 57 (761)
++.+++|+|++|+||||.+.+|+..+ + ..+..+..|..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 45799999999999999999998654 2 245667777753
No 418
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.12 E-value=0.049 Score=61.84 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
.-|+|.||||+|||++|+.|++.++.++..++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 469999999999999999999988866655543
No 419
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.10 E-value=0.07 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
|..|.|+|++||||||+.+++...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56799999999999999999988754
No 420
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.10 E-value=0.29 Score=50.57 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~ 53 (761)
...++|+|++|+|||++|+.+.... +..+.+++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 4578999999999999999998764 234555554
No 421
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.09 E-value=0.036 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
|+|.|+||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887654
No 422
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.08 E-value=0.057 Score=63.11 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=26.7
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~ 46 (761)
......|++|.|||||||||..+.|+++++.
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344569999999999999999999999983
No 423
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.07 E-value=0.46 Score=52.38 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=24.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|+||+||||+|+.+++.+.
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456889999999999999999998864
No 424
>PRK09169 hypothetical protein; Validated
Probab=94.04 E-value=0.13 Score=67.51 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=62.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--------------CCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--------------~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
-|+|+|.+|+||||+++.|+..++. ..++.|... +| ..++.....+...+. ..+||..-.
T Consensus 2112 aIvLIG~MGaGKTTIGr~LA~~Lg~--~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr--~~vVLSTGG 2185 (2316)
T PRK09169 2112 ARRIEREVGPLLQALLQKLAGGLRV--DKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR--WEVVLPAEG 2185 (2316)
T ss_pred ccceeeCCCCCHhHHHHHHHHHhCC--CccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc--CCeEEeCCC
Confidence 6899999999999999999999994 446655442 22 223333355555554 466665533
Q ss_pred CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 88 ~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
+.......+..++..|+ +||++.+.+++.+|+....
T Consensus 2186 Gav~~~enr~~L~~~Gl---vV~L~an~~tl~~Rty~g~ 2221 (2316)
T PRK09169 2186 FGAAVEQARQALGAKGL---RVMRINNGFAAPDTTYAGL 2221 (2316)
T ss_pred CcccCHHHHHHHHHCCE---EEEEECCHHHHHHHhccCC
Confidence 33322222222255676 8999999999998886443
No 425
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.02 E-value=0.081 Score=56.62 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE 89 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~ 89 (761)
=+++.||||-||||+|.-++.+++..+...+.-.+. ...=+..+...|..|..+.||-.+.-
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~Le~~DVLFIDEIHrl 115 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNLEEGDVLFIDEIHRL 115 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcCCcCCeEEEehhhhc
Confidence 589999999999999999999999666555554442 11112344455777777788774443
No 426
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.00 E-value=0.19 Score=55.33 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~ 53 (761)
.-.++.+.|+|||||||||-.++.. .+....+|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 3469999999999999999998743 3445666665
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.00 E-value=0.3 Score=52.50 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
++..++++|++|+||||+++.++..+ +.....++.|..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34689999999999999999987664 234556777655
No 428
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.98 E-value=0.043 Score=54.73 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
|+|+|.||+||||+.+++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 429
>COG4240 Predicted kinase [General function prediction only]
Probab=93.98 E-value=0.11 Score=54.04 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=31.2
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHc---C-CCeEEEecccc
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---A-RPWARICQDTI 56 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~-~~~~~I~~D~i 56 (761)
+.+.|.++.++|+-||||||++..|...+ + .....++.|++
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 45679999999999999999998865332 2 34556777777
No 430
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.98 E-value=0.047 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
|+++|.+|||||||.++|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 431
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.32 Score=57.73 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEE
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFL 83 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VII 83 (761)
++=|+|-|+||||||.+|.+++...+..+.-+-.-++-+...+..++..+.+..+.+.-+.+|+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEE
Confidence 4569999999999999999999998844444444555555566667766666666665566554
No 432
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.92 E-value=0.047 Score=57.65 Aligned_cols=26 Identities=19% Similarity=0.528 Sum_probs=23.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+-+++|+|++|+||||+++.+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45889999999999999999998765
No 433
>PRK13768 GTPase; Provisional
Probab=93.91 E-value=0.068 Score=56.73 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
++.++++.|++||||||++..++..+ +.....++.|-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 35689999999999999998877554 45566676553
No 434
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.90 E-value=0.42 Score=50.69 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=25.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~ 53 (761)
-.+++|.|+||+|||||+.+++... +....+++.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3589999999999999999876542 444555664
No 435
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=93.89 E-value=0.12 Score=54.30 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChh
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA 612 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~ 612 (761)
.|+..|..+..+++|+|+ ..+.|+|+||- ..|+.+.
T Consensus 52 ~PC~~Vd~~~gyvvlKD~--~Gp~qyLLmPt-~rIsGIE 87 (250)
T TIGR00672 52 SPCAEVKPNAGYVVLKDL--NGPLQYLLMPT-YRINGTE 87 (250)
T ss_pred CCcceEcCCCCeEEEeCC--CCCceeEEeec-cccCCcc
Confidence 467777778899999999 89999999999 4676664
No 436
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.069 Score=63.13 Aligned_cols=98 Identities=21% Similarity=0.407 Sum_probs=58.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----CCCCCcHHHHH-HHHHHHHH----CCCcEEEeC----
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KGKSGTKVQCL-TSASSALK----KGKSVFLDR---- 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----~~~~~~~~~~~-~~~~~~L~----~g~~VIID~---- 85 (761)
-.|+-++||||.|||++|+.+++.+++.|.+++-.-+. +|.+.++--.+ -.+.++|+ .+-.++||-
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 35889999999999999999999999999999853332 23322221111 12233343 233467764
Q ss_pred -CCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHH
Q 004319 86 -CNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKL 117 (761)
Q Consensus 86 -tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~ 117 (761)
..+.-+--..++++ -+.+..+.=.|||+|.++
T Consensus 518 G~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 518 GSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred CCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 11222233345554 445555555677777665
No 437
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.85 E-value=0.063 Score=52.53 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.=++|+|++|+||||+|..|.+. + +..++.|.+
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~-g--~~lvaDD~v 47 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR-G--HRLVADDRV 47 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-C--CeEEECCEE
Confidence 34899999999999999998875 3 556666655
No 438
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.84 E-value=0.079 Score=57.65 Aligned_cols=41 Identities=29% Similarity=0.230 Sum_probs=30.7
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
..+.+.+|.++|+||||||||+..+...+ +..+.+++.|..
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34467789999999999999999987654 345566666643
No 439
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=93.80 E-value=0.13 Score=53.96 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD 613 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d 613 (761)
.|+..|..+..+++|+|+ ..+.|+|+||- ..|+.+.+
T Consensus 53 ~PC~~Vd~~~gyvvlKD~--~Gp~qyLLiPt-~rIsGIEs 89 (252)
T PRK05471 53 APCAEVDPQAGYVLLKDR--NGPLQYLLMPT-YRISGIES 89 (252)
T ss_pred CCCeeEccCCCeEEEecC--CCCcceEEeec-ccccCccC
Confidence 467788788899999987 78899999999 46766643
No 440
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.79 E-value=0.44 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-..++|+|++|||||||.+-+....
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44689999999999999999987653
No 441
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.77 E-value=0.11 Score=53.69 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=36.1
Q ss_pred CCCccchhhhhhhhccc---CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319 1 MDTDIDDTCKAKDEEKK---WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (761)
Q Consensus 1 m~~~~~~~~~~~~~~~~---~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D 54 (761)
|+..+....+.-..... +.-.++.+.|+||+||||||.+++... +....+++.+
T Consensus 1 ~~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 1 MDERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 55555555553333222 245799999999999999999987532 4455566655
No 442
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.70 E-value=0.58 Score=53.79 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEeccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDT 55 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~ 55 (761)
-++|.|+||+|||+++.+++..+ +..+.+++.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 49999999999999999988764 22345555544
No 443
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.66 E-value=0.72 Score=46.25 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|++|+||||+|+.+++.+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3467899999999999999999988753
No 444
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.64 Score=55.61 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=24.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-+.-+++.|++|+||||+|+.+++.+.
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998876
No 445
>PF13479 AAA_24: AAA domain
Probab=93.65 E-value=0.16 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.809 Sum_probs=19.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHV 40 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L 40 (761)
++.-++|.|+||+||||||..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4567999999999999999988
No 446
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.63 E-value=0.11 Score=67.41 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=34.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~ 58 (761)
.|.=|+|+||||+|||.+|++++...+.++..|+...+.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 4556999999999999999999999998888888766643
No 447
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.60 E-value=0.12 Score=63.01 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc----------CCCeEEEeccccc--CCCCCcHHHHHHHHHHHHHCCC--cEEEeC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTIN--KGKSGTKVQCLTSASSALKKGK--SVFLDR 85 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~----------~~~~~~I~~D~i~--~~~~~~~~~~~~~~~~~L~~g~--~VIID~ 85 (761)
.-++|+|+||+|||++++.+++.. +..+..++...+. ....+.+++.++.+.+.+.... .++||-
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 357899999999999999999875 2222233332332 2334556666665555554332 356675
No 448
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.58 Score=46.30 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=22.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++|||||||.+.++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999997654
No 449
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.57 E-value=0.059 Score=66.39 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.+|.+.|+|||||||+|+.|++.++ +.+++.+.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~--~~~~~~g~~ 68 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG--AQCLNTGSF 68 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHH
Confidence 5899999999999999999999999 667887666
No 450
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.54 E-value=0.48 Score=56.18 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-+..+++.|++|+||||+|+.+++.+.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998864
No 451
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.53 E-value=0.6 Score=49.55 Aligned_cols=40 Identities=20% Similarity=0.485 Sum_probs=32.7
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
...|.-|+.-||||.|||-+|++|+.+...++.++..-.+
T Consensus 148 ~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l 187 (368)
T COG1223 148 DWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL 187 (368)
T ss_pred ccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH
Confidence 3467889999999999999999999998877766655443
No 452
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=93.53 E-value=0.12 Score=53.54 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc
Q 004319 572 ERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD 613 (761)
Q Consensus 572 e~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d 613 (761)
...|+..|-.+..+++++|. ..+.|||+||- ..|+.|.+
T Consensus 22 ~p~pC~~Vd~~~gyvvlKd~--~G~~qyLL~Pt-~rIsGIEs 60 (222)
T PF02611_consen 22 NPAPCAQVDLQQGYVVLKDR--NGPLQYLLMPT-DRISGIES 60 (222)
T ss_dssp --TTSSEEETTTTEEEEE-S--SSSS-EEEEES-S---STT-
T ss_pred CCCCCeEEcCCCCEEEEeCC--CCCccEEEeec-cccCCccC
Confidence 34578888888999999994 77899999999 46666643
No 453
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.47 E-value=0.06 Score=49.41 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 004319 23 VIMVGAPGSGKSTFCEHVMR 42 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~ 42 (761)
|+++|.||+|||||.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 454
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.46 E-value=0.069 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+|.++|+.+||||||++.|...+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999976653
No 455
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.46 E-value=0.23 Score=54.36 Aligned_cols=104 Identities=11% Similarity=0.021 Sum_probs=62.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcH-HHHHHHHHHHHHCCCcEEEeCCC---CCHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCN---LEREQ 92 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~-~~~~~~~~~~L~~g~~VIID~tn---~~~~~ 92 (761)
..-++|.|++|+|||+++.+++..+ +.....+....+........ ..-.....+.+..-..+|||... .+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH
Confidence 3469999999999999999998775 34445555433211000000 00112334556677789999854 55566
Q ss_pred HHHHHH-h--CC-CCceEEEEEEeCCHHHHHHHHH
Q 004319 93 RTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRSV 123 (761)
Q Consensus 93 R~~~~~-l--~~-~~~~v~vV~Ld~p~e~~~~R~~ 123 (761)
|..++. + .+ ..-...+|--+.+.+.+.++..
T Consensus 236 ~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 236 RDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 655544 2 22 2344566777889888888764
No 456
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.45 E-value=0.14 Score=56.03 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=31.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
..+|.+|+++|..|+||||-.-+|+..+ +......-.|.+|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 4579999999999999999988887665 3445555667774
No 457
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.45 E-value=0.075 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
+.+|+|++||||||+..++.-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987644
No 458
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.44 E-value=0.66 Score=51.51 Aligned_cols=106 Identities=21% Similarity=0.186 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEecccc-----------cCCCCCc-HHHHHHHHHHHHHCCCcEEEe
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI-----------NKGKSGT-KVQCLTSASSALKKGKSVFLD 84 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D~i-----------~~~~~~~-~~~~~~~~~~~L~~g~~VIID 84 (761)
.-+|+++|++||||||+.+.+...... .....-.|.+ ...+.+. .......+..+|+.+-.+|+=
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 468999999999999999998875541 1111112211 1111110 112335556677766665554
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEEEEEeC-CHHHHHHHHHhcc
Q 004319 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRI 126 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~-p~e~~~~R~~~R~ 126 (761)
+-..........+.....|..+ +-.+.. +......|+..-.
T Consensus 202 gEird~~~~~~~l~aa~tGh~v-~~T~Ha~~~~~~~~Rl~~~~ 243 (343)
T TIGR01420 202 GEMRDLETVELALTAAETGHLV-FGTLHTNSAAQTIERIIDVF 243 (343)
T ss_pred eCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCHHHHHHHHHHhc
Confidence 4445555444434442223322 222333 4556778887654
No 459
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.43 E-value=0.097 Score=53.17 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=31.0
Q ss_pred Ccc-EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEeccccc
Q 004319 18 WKQ-ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTIN 57 (761)
Q Consensus 18 ~~~-~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~ 57 (761)
..| ..|-+.|+|||||||+..++.+.+. .....|..|.+.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 345 7889999999999999999877764 346667777763
No 460
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.42 E-value=0.22 Score=54.77 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~ 53 (761)
.-.++.+.|+|||||||||..++... +....+|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 34699999999999999999876543 344556654
No 461
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=93.38 E-value=0.68 Score=49.54 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=71.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH---HHHHHHHHH-HCCCcEEEeCCCCCHH--
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ---CLTSASSAL-KKGKSVFLDRCNLERE-- 91 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~---~~~~~~~~L-~~g~~VIID~tn~~~~-- 91 (761)
..|+||++-|.-||||....++|.+.+.-....+..-. ...+.+. .+-..-+.| ..|+..|.|++-|...
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~----~Pt~eE~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~ 129 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFK----APSAEELDHDFLWRIHKALPERGEIGIFNRSHYEDVLV 129 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCC----CCCHHHHcCchHHHHHHhCCCCCeEEEEcCccccchhh
Confidence 35899999999999999999999998874333332210 0001110 111222333 5677888888655541
Q ss_pred -----------HHHH------HHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 92 -----------QRTD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 92 -----------~R~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
.+.. |-+. ...|+.+.=+||.++.++..+|+.+|...+
T Consensus 130 ~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p 185 (264)
T TIGR03709 130 VRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDP 185 (264)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCC
Confidence 1222 2223 567898999999999999999999998654
No 462
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.38 E-value=0.21 Score=55.91 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEec
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQ 53 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~ 53 (761)
..+..++|.|+||+||||+++.+++.+ +..+.+++.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 345568999999999999999998765 233555554
No 463
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.37 E-value=0.24 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
....+|.|+|++|+||||+|.++++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 67889999999999999999998866
No 464
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.37 E-value=0.057 Score=50.92 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
-.++.|+|++|||||||.+.|+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3589999999999999999987654
No 465
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.34 E-value=0.1 Score=56.41 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=28.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEeccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDT 55 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~ 55 (761)
..-.+|.|+|+||||||||.+++...+. ....+|..|.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~ 141 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ 141 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence 3457899999999999999999988754 2355555443
No 466
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.33 E-value=0.3 Score=51.67 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=52.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccc--------------------cCCCCCcH-HHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI--------------------NKGKSGTK-VQCLTSASSA 74 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i--------------------~~~~~~~~-~~~~~~~~~~ 74 (761)
..|++|.|.||+|||+|+..++... +.++.+++.+.- +.+..... ...+..+...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHHHH
Confidence 4699999999999999999987643 345666664221 12221111 1122334455
Q ss_pred HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeC
Q 004319 75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL 113 (761)
Q Consensus 75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~ 113 (761)
+.....+|.|....+...-...++. +.....+.+|++|.
T Consensus 99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 99 LSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp HHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 6666667777767777665555544 22213345556663
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.29 E-value=0.086 Score=61.27 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~D 54 (761)
+..+++|.|+|||||||||.+++.. .+....+++.+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4679999999999999999997532 35566667654
No 468
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=93.27 E-value=0.074 Score=54.48 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH---HcCCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMR---SSARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~---~~~~~~~~I~~D~i 56 (761)
.-.+++||.|||||||+..+.+ ..|+.+..+|.|--
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA 42 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA 42 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHH
Confidence 3578999999999999998764 46677777887643
No 469
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.43 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|+||+||||+|+.+++...
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466899999999999999999988764
No 470
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.23 E-value=0.45 Score=57.19 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...+..++++|++|+||||+|+.+++.+.
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34567899999999999999999998865
No 471
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.4 Score=56.40 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|+||+||||+|+.+++.+.
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999999998875
No 472
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.18 E-value=0.083 Score=54.11 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=30.0
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEeccc
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDT 55 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~ 55 (761)
..+.+.+|.++|.+|||||||.++++..++ ....++..|.
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~ 59 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV 59 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 445688999999999999999999988754 2334444443
No 473
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.45 Score=56.69 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-+..+++.|++|+||||+|+.+++.+.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998865
No 474
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.17 Score=54.95 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=31.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
..-|+|+||.|||||-+|+-|++.++.+|..-+.-.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 3469999999999999999999999988877666555
No 475
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.44 Score=57.09 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.-+..+++.|++|+||||+|+.+++.++
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3456789999999999999999998876
No 476
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.11 E-value=0.16 Score=62.44 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
..++|+|+||+||||+|+.++..++..+..++.
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence 479999999999999999999999877877764
No 477
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.09 E-value=0.07 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
++.++|++||||||++.+|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 478
>PRK00089 era GTPase Era; Reviewed
Probab=93.02 E-value=0.59 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~ 42 (761)
+.-.|.|+|.||||||||.+.|..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g 27 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVG 27 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999874
No 479
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.11 Score=54.65 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=29.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
.|.=++|.||||+|||-++++.+......|.++....
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 4566899999999999999999987665565555433
No 480
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=92.99 E-value=0.77 Score=53.29 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=71.5
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH---HHHHHHHHH-HCCCcEEEeCCCCCHH-
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ---CLTSASSAL-KKGKSVFLDRCNLERE- 91 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~---~~~~~~~~L-~~g~~VIID~tn~~~~- 91 (761)
.+.|.||++-|.-||||++..++|...+......+..-. .....+. .+-..-+.| ..|...|.|++-|...
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~----~P~~eE~~~~flwRfw~~lP~~G~I~IFdRSWY~~vl 112 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFG----RPSDEERERPPMWRFWRRLPPKGKIGIFFGSWYTRPL 112 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCC----CCCHHHhcCcHHHHHHHhCCCCCeEEEEcCcccchhh
Confidence 467899999999999999999999998773222221100 0000100 112222223 5677788888665541
Q ss_pred ------------HHHHH------HHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 92 ------------QRTDF------VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 92 ------------~R~~~------~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
.+..+ -+. ...|+.+.=+||.++.++..+|+.+|...+
T Consensus 113 verv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P 169 (493)
T TIGR03708 113 IERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDP 169 (493)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 22222 223 567898999999999999999999998764
No 481
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.96 E-value=0.072 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=24.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+..+++|+||||+||||||+.|++.+.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 456999999999999999999998765
No 482
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.92 E-value=0.091 Score=51.20 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
++.++|++||||||++..+...+ +.++.+++.|.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 37889999999999999987654 34566666663
No 483
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=92.83 E-value=0.052 Score=35.24 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.2
Q ss_pred ccccCCCCCCChHHHHHHHhhcC
Q 004319 716 RCHRCRSAHPSIPRLKSHISSCR 738 (761)
Q Consensus 716 ~C~~C~~~~~n~~~LK~Hl~~~~ 738 (761)
.|..|++.|++...|+.|+.+++
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCcCCCCcCCcHHHHHHHHHhhC
Confidence 69999999999999999998764
No 484
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=92.82 E-value=0.15 Score=51.03 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH-Hc-CCCeEEEec
Q 004319 22 LVIMVGAPGSGKSTFCEHVMR-SS-ARPWARICQ 53 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~-~~-~~~~~~I~~ 53 (761)
++++.|..|||||||.+++.+ .. +..+.+|-.
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~n 35 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVN 35 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEc
Confidence 689999999999999999994 22 244555543
No 485
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.82 E-value=0.11 Score=57.24 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPW 48 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~ 48 (761)
..|+|+|.|||||||+++.|+..++..+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4789999999999999999999888544
No 486
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.80 E-value=0.11 Score=52.97 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=27.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D 54 (761)
.-.++.+.|+||||||+|+.+++... +....+++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45799999999999999999987542 3445556654
No 487
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.26 Score=55.01 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.-|++.||||.|||-||+.|+...|..|......++
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc
Confidence 478999999999999999999999977766665444
No 488
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.78 E-value=0.68 Score=49.55 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEe-ccccc-CCCC----Cc--HHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-QDTIN-KGKS----GT--KVQCLTSASSALKKGKSVFLDRCNL 88 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~-~D~i~-~~~~----~~--~~~~~~~~~~~L~~g~~VIID~tn~ 88 (761)
.-+|+++|++||||||+.+.+...... ....+. ..++. .+.. .. .....+.+..+|+.+-.+|+=+--.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 458999999999999999998776542 122221 11111 1110 00 0113356667777777777767666
Q ss_pred CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 89 ~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
..+....+++. ..-+.-+..+.- -+......|+..
T Consensus 160 ~~e~a~~~~~aa~tGh~v~tTlHa-~~~~~ai~Rl~~ 195 (264)
T cd01129 160 DAETAEIAVQAALTGHLVLSTLHT-NDAPGAITRLLD 195 (264)
T ss_pred CHHHHHHHHHHHHcCCcEEEEecc-CCHHHHHHHHHH
Confidence 66655555555 221221222221 234556667653
No 489
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.63 Score=55.60 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.2
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..-+..++++|++|+||||+|+.+++.+.
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 35 QRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999998875
No 490
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.74 E-value=0.1 Score=54.38 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~ 53 (761)
+..++++.|+||||||||+.+++.. .+....+++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5679999999999999999998643 2445555555
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.73 E-value=1.3 Score=48.36 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...++++|++|||||||.+.|...+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 45899999999999999999987765
No 492
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=92.73 E-value=0.042 Score=35.92 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.4
Q ss_pred ccccCCCCCCChHHHHHHHhhc
Q 004319 716 RCHRCRSAHPSIPRLKSHISSC 737 (761)
Q Consensus 716 ~C~~C~~~~~n~~~LK~Hl~~~ 737 (761)
+|..|++.|.+...|+.|++.|
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhHC
Confidence 6999999999999999999874
No 493
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.72 E-value=0.12 Score=58.04 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=25.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..|.+|.++|++|||||||+.+|...+.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999998876
No 494
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.71 E-value=0.61 Score=50.40 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..|..+++.||||+||||+|..+++.+.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 3566899999999999999999998865
No 495
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.67 E-value=0.075 Score=54.78 Aligned_cols=21 Identities=38% Similarity=0.855 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 004319 23 VIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~ 43 (761)
|++.|+|||||||+.++++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 588999999999999999987
No 496
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.66 E-value=0.83 Score=51.37 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEeccccc-------------CCCCC-cHHHHHHHHHHHHHCCCcE
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN-------------KGKSG-TKVQCLTSASSALKKGKSV 81 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~-------------~~~~~-~~~~~~~~~~~~L~~g~~V 81 (761)
-+++++|++||||||+.+.+..... .....+. |-+. +...+ ........+..+|+..-.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE-dp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE-DPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-cCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 4789999999999999999877652 1122221 1110 00111 0112335667788888788
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
|+=+--...+.....++. ..-+.-+..+. --+......|+..=
T Consensus 229 I~vGEiRd~et~~~al~aa~TGH~v~tTlH-a~s~~~ai~Rl~~~ 272 (372)
T TIGR02525 229 IGVGEIRDLETFQAAVLAGQSGHFCLGTLH-VKSPGEAISRCLQM 272 (372)
T ss_pred EeeCCCCCHHHHHHHHHHHhcCCcEEEeeC-CCCHHHHHHHHHHh
Confidence 777766666655544444 22222122222 12456677787653
No 497
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.64 E-value=0.7 Score=50.46 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=62.5
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEEecccc---c-CCCCCcHHHHHHHHHHH-----HHCCCcEEEeC-
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI---N-KGKSGTKVQCLTSASSA-----LKKGKSVFLDR- 85 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~-~~I~~D~i---~-~~~~~~~~~~~~~~~~~-----L~~g~~VIID~- 85 (761)
..-+..+++.|++|+||+|+|+.+++.+-... .....|.+ . ++.....++..+.+... ....+.+|||.
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~a 102 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNS 102 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEech
Confidence 44567899999999999999999998753100 00011211 0 22222333333332211 12335678877
Q ss_pred CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 86 tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
-.++......+++. .+......+|.+.-..+.+..-+..|-.
T Consensus 103 d~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 103 EKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred hhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 45566666677777 6555555555555555666555555554
No 498
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.59 E-value=0.22 Score=53.79 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=49.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe-cccc-----------cCCCCC-cHHHHHHHHHHHHHCCCcEEE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTI-----------NKGKSG-TKVQCLTSASSALKKGKSVFL 83 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~-~D~i-----------~~~~~~-~~~~~~~~~~~~L~~g~~VII 83 (761)
+.-||++.||.||||||....+....+. ...++. .|=| .+.+.+ ....+...++.+|++.-.||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 4459999999999999988887766551 122222 1222 112222 223344777889999999999
Q ss_pred eCCCCCHHHHHHHH
Q 004319 84 DRCNLEREQRTDFV 97 (761)
Q Consensus 84 D~tn~~~~~R~~~~ 97 (761)
=+--.+.+.-.--+
T Consensus 204 vGEmRD~ETi~~AL 217 (353)
T COG2805 204 VGEMRDLETIRLAL 217 (353)
T ss_pred EeccccHHHHHHHH
Confidence 88655555444333
No 499
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.52 E-value=0.15 Score=54.26 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=27.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D 54 (761)
...++++.|+||+||||||.+++.. .+....+++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4579999999999999999997653 24456666653
No 500
>PRK10646 ADP-binding protein; Provisional
Probab=92.49 E-value=0.13 Score=50.59 Aligned_cols=27 Identities=22% Similarity=0.488 Sum_probs=24.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...+|+|.|.-|||||||++.+++.++
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999999987
Done!