Query 004319
Match_columns 761
No_of_seqs 659 out of 4231
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 21:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sp4_A Aprataxin-like protein; 100.0 2.4E-49 8.2E-54 396.5 5.4 173 557-737 3-193 (204)
2 3q71_A Poly [ADP-ribose] polym 99.9 1.2E-26 4E-31 236.9 12.0 118 338-476 34-158 (221)
3 3eti_A X (ADRP) domain, macro 99.9 3.9E-27 1.3E-31 231.1 7.4 109 343-476 10-125 (168)
4 3q6z_A Poly [ADP-ribose] polym 99.9 2.1E-26 7.1E-31 234.5 10.4 117 339-476 33-157 (214)
5 1spv_A Putative polyprotein/ph 99.9 1.6E-25 5.6E-30 223.4 13.7 112 343-476 3-122 (184)
6 2xd7_A Core histone macro-H2A. 99.9 2E-25 7E-30 224.3 12.8 113 340-476 16-139 (193)
7 1yd9_A Core histone macro-H2A. 99.9 2.1E-25 7.2E-30 224.1 12.8 113 340-476 16-136 (193)
8 4abl_A Poly [ADP-ribose] polym 99.9 2.2E-25 7.7E-30 221.8 9.8 110 334-476 13-127 (183)
9 2x47_A Macro domain-containing 99.9 3E-25 1E-29 229.1 10.8 113 342-476 61-178 (235)
10 3ejg_A Non-structural protein 99.9 4E-25 1.4E-29 220.4 8.4 107 342-476 37-150 (193)
11 3kh6_A Poly [ADP-ribose] polym 99.9 5.8E-24 2E-28 213.9 10.6 110 334-476 24-138 (199)
12 2acf_A Replicase polyprotein 1 99.9 4.3E-24 1.5E-28 212.2 7.9 109 342-476 19-134 (182)
13 2dx6_A Hypothetical protein TT 99.9 1.7E-23 6E-28 204.1 11.5 108 343-476 2-114 (159)
14 3gqe_A Non-structural protein 99.9 7.4E-24 2.5E-28 207.7 7.3 105 342-476 3-112 (168)
15 3gpg_A NSP3, non-structural pr 99.9 6.4E-24 2.2E-28 208.0 6.4 104 343-476 10-118 (168)
16 1vhu_A Hypothetical protein AF 99.9 2E-23 7E-28 212.4 10.0 117 335-476 13-150 (211)
17 2vri_A Non-structural protein 99.9 1.6E-23 5.6E-28 207.0 8.9 111 342-476 16-129 (174)
18 3ejf_A Non-structural protein 99.9 1.2E-23 4E-28 207.3 7.0 117 339-476 10-132 (176)
19 1njr_A 32.1 kDa protein in ADH 99.9 3.1E-22 1.1E-26 211.1 10.8 159 313-476 16-194 (284)
20 4gua_A Non-structural polyprot 99.9 5.4E-22 1.8E-26 219.2 8.7 104 343-476 344-452 (670)
21 3bl9_A Scavenger mRNA-decappin 99.8 1.2E-20 4.1E-25 198.3 12.2 131 557-701 136-274 (301)
22 1vlr_A MRNA decapping enzyme; 99.8 2.3E-20 7.9E-25 198.3 12.4 131 557-701 183-321 (350)
23 3n1s_A HIT-like protein HINT; 99.7 5.8E-18 2E-22 157.2 10.5 95 574-669 15-111 (119)
24 4egu_A Histidine triad (HIT) p 99.7 1.2E-17 4.1E-22 154.8 11.1 99 574-673 16-116 (119)
25 3o1c_A Histidine triad nucleot 99.7 1.5E-17 5E-22 156.0 9.3 100 563-665 18-118 (126)
26 3zvl_A Bifunctional polynucleo 99.7 1E-16 3.4E-21 179.2 14.8 143 16-166 254-397 (416)
27 3oj7_A Putative histidine tria 99.7 5.1E-17 1.7E-21 150.1 10.1 91 574-665 19-109 (117)
28 2jyc_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 155.2 9.3 106 341-476 18-129 (160)
29 2eee_A Uncharacterized protein 99.6 1.5E-16 5.1E-21 153.4 8.1 106 341-476 7-118 (149)
30 1xqu_A HIT family hydrolase; p 99.6 6.9E-16 2.3E-20 148.4 10.1 99 564-665 39-139 (147)
31 1ly1_A Polynucleotide kinase; 99.6 9.8E-16 3.4E-20 149.2 10.2 129 19-155 1-150 (181)
32 3o0m_A HIT family protein; ssg 99.6 2.8E-15 9.5E-20 144.4 13.1 99 564-665 9-109 (149)
33 2fg1_A Conserved hypothetical 99.6 8.3E-16 2.8E-20 149.6 8.8 116 343-476 4-127 (158)
34 3ano_A AP-4-A phosphorylase; d 99.6 2.4E-15 8.3E-20 153.4 9.6 113 552-665 41-174 (218)
35 1fit_A FragIle histidine prote 99.6 5.5E-15 1.9E-19 141.9 10.5 92 573-665 9-102 (147)
36 3imi_A HIT family protein; str 99.6 6.9E-15 2.4E-19 141.3 10.9 101 564-667 13-114 (147)
37 3ksv_A Uncharacterized protein 99.6 7.4E-15 2.5E-19 141.5 10.7 91 574-665 23-114 (149)
38 3p0t_A Uncharacterized protein 99.6 9.2E-15 3.1E-19 138.9 10.8 96 563-665 8-103 (138)
39 2eo4_A 150AA long hypothetical 99.6 1.1E-14 3.9E-19 140.0 11.6 88 574-665 11-102 (149)
40 3lb5_A HIT-like protein involv 99.6 1.5E-14 5E-19 141.3 12.0 99 564-665 32-131 (161)
41 3l7x_A SMU.412C, putative HIT- 99.5 1.9E-14 6.6E-19 141.9 12.4 101 564-667 40-141 (173)
42 1y23_A HIT, histidine triad pr 99.5 1.7E-14 5.8E-19 138.0 9.4 92 574-666 17-109 (145)
43 2oik_A Histidine triad (HIT) p 99.5 3.6E-14 1.2E-18 137.3 10.9 86 575-665 19-104 (154)
44 3r6f_A HIT family protein; str 99.5 1.2E-14 4E-19 137.7 7.2 85 574-666 16-102 (135)
45 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 3.2E-13 1.1E-17 141.2 16.5 128 19-154 3-142 (260)
46 1ltq_A Polynucleotide kinase; 99.5 8.8E-14 3E-18 147.5 11.6 174 19-211 1-201 (301)
47 3t61_A Gluconokinase; PSI-biol 99.5 8.7E-13 3E-17 131.8 16.6 129 18-156 16-156 (202)
48 3ohe_A Histidine triad (HIT) p 99.3 2.1E-12 7.2E-17 122.6 10.0 84 576-665 13-97 (137)
49 1gvn_B Zeta; postsegregational 99.3 4.7E-12 1.6E-16 134.6 13.8 150 17-166 30-207 (287)
50 3sr0_A Adenylate kinase; phosp 99.3 3.8E-12 1.3E-16 129.0 12.4 105 22-128 2-127 (206)
51 3q71_A Poly [ADP-ribose] polym 99.3 5.9E-14 2E-18 143.2 -1.3 128 187-323 68-201 (221)
52 3umf_A Adenylate kinase; rossm 99.3 4.4E-12 1.5E-16 129.5 11.7 151 15-172 24-203 (217)
53 1knq_A Gluconate kinase; ALFA/ 99.3 4.8E-11 1.7E-15 116.1 18.3 122 19-151 7-144 (175)
54 1ems_A Nitfhit, NIT-fragIle hi 99.3 3.2E-12 1.1E-16 143.6 10.5 91 574-665 306-398 (440)
55 3i24_A HIT family hydrolase; s 99.3 4E-12 1.4E-16 122.4 9.6 85 576-665 13-97 (149)
56 4eun_A Thermoresistant glucoki 99.3 3.5E-11 1.2E-15 120.3 16.5 143 18-174 27-185 (200)
57 1qhx_A CPT, protein (chloramph 99.3 7.5E-11 2.6E-15 114.7 17.3 107 20-128 3-136 (178)
58 2rhm_A Putative kinase; P-loop 99.3 1.1E-11 3.9E-16 121.9 11.5 108 18-127 3-127 (193)
59 1qf9_A UMP/CMP kinase, protein 99.3 5.7E-11 1.9E-15 116.4 16.3 108 18-127 4-133 (194)
60 1tev_A UMP-CMP kinase; ploop, 99.3 4.5E-11 1.5E-15 117.3 14.6 107 19-127 2-136 (196)
61 2p5t_B PEZT; postsegregational 99.3 2.2E-11 7.4E-16 126.6 12.7 112 17-128 29-160 (253)
62 3q6z_A Poly [ADP-ribose] polym 99.2 3E-13 1E-17 137.6 -2.3 114 187-311 65-183 (214)
63 3tlx_A Adenylate kinase 2; str 99.2 5.5E-11 1.9E-15 123.0 12.6 109 17-127 26-158 (243)
64 3nrd_A Histidine triad (HIT) p 99.2 3.9E-11 1.3E-15 113.6 10.3 84 576-665 15-99 (135)
65 2c95_A Adenylate kinase 1; tra 99.2 9.6E-11 3.3E-15 115.5 13.4 105 18-127 7-135 (196)
66 2cdn_A Adenylate kinase; phosp 99.2 6.1E-11 2.1E-15 118.2 12.0 109 16-126 16-148 (201)
67 4abl_A Poly [ADP-ribose] polym 99.2 1.3E-12 4.6E-17 129.8 -0.3 118 187-325 50-172 (183)
68 1spv_A Putative polyprotein/ph 99.2 5.1E-12 1.7E-16 125.8 3.1 126 188-324 32-164 (184)
69 1z84_A Galactose-1-phosphate u 99.2 4.9E-11 1.7E-15 130.2 11.1 84 578-665 227-318 (351)
70 1gup_A Galactose-1-phosphate u 99.2 5.7E-11 1.9E-15 129.6 11.4 120 576-699 210-338 (348)
71 2axn_A 6-phosphofructo-2-kinas 99.2 1.5E-10 5.2E-15 132.7 14.8 131 16-146 31-189 (520)
72 2bwj_A Adenylate kinase 5; pho 99.2 1.1E-10 3.7E-15 115.4 11.7 105 18-127 10-138 (199)
73 3dl0_A Adenylate kinase; phosp 99.2 6.1E-11 2.1E-15 119.5 10.1 103 22-126 2-128 (216)
74 3lw7_A Adenylate kinase relate 99.2 1.4E-10 4.7E-15 111.3 12.1 116 21-146 2-140 (179)
75 2vli_A Antibiotic resistance p 99.2 1.6E-10 5.3E-15 112.9 12.7 126 19-151 4-145 (183)
76 3kb2_A SPBC2 prophage-derived 99.2 2.3E-10 7.8E-15 110.1 13.3 130 22-165 3-148 (173)
77 3cm0_A Adenylate kinase; ATP-b 99.2 1.2E-10 4.2E-15 114.1 11.2 104 19-126 3-127 (186)
78 3fb4_A Adenylate kinase; psych 99.1 9.2E-11 3.1E-15 118.0 10.4 103 22-126 2-128 (216)
79 1aky_A Adenylate kinase; ATP:A 99.1 2.3E-10 7.9E-15 115.8 13.0 107 19-127 3-134 (220)
80 2xd7_A Core histone macro-H2A. 99.1 8E-12 2.7E-16 125.3 2.1 127 187-323 50-182 (193)
81 1ukz_A Uridylate kinase; trans 99.1 7.2E-10 2.5E-14 110.3 16.1 106 17-127 12-143 (203)
82 3be4_A Adenylate kinase; malar 99.1 2.1E-10 7.1E-15 116.2 12.3 106 21-128 6-135 (217)
83 1yd9_A Core histone macro-H2A. 99.1 6.5E-12 2.2E-16 126.0 0.7 115 187-311 47-162 (193)
84 3kh6_A Poly [ADP-ribose] polym 99.1 1.8E-11 6.1E-16 123.1 3.5 111 194-324 67-182 (199)
85 2xb4_A Adenylate kinase; ATP-b 99.1 7.2E-10 2.5E-14 112.9 14.7 104 22-127 2-128 (223)
86 2x47_A Macro domain-containing 99.1 1.8E-11 6.2E-16 126.2 1.8 125 188-324 91-221 (235)
87 3gmt_A Adenylate kinase; ssgci 99.0 1.9E-09 6.6E-14 110.8 14.0 102 22-128 10-134 (230)
88 3i4s_A Histidine triad protein 99.0 8.8E-10 3E-14 106.0 10.1 84 576-665 18-102 (149)
89 1zak_A Adenylate kinase; ATP:A 99.0 1.5E-09 5.1E-14 109.9 12.3 104 19-127 4-131 (222)
90 3eti_A X (ADRP) domain, macro 99.0 5E-11 1.7E-15 116.8 0.4 118 187-325 42-160 (168)
91 4gp7_A Metallophosphoesterase; 99.0 2.5E-09 8.6E-14 104.4 11.1 143 19-171 8-164 (171)
92 2dx6_A Hypothetical protein TT 99.0 5.6E-11 1.9E-15 115.6 -0.8 117 194-324 36-152 (159)
93 1ak2_A Adenylate kinase isoenz 99.0 3.2E-09 1.1E-13 108.6 12.2 108 19-128 15-146 (233)
94 1zd8_A GTP:AMP phosphotransfer 98.9 4.6E-09 1.6E-13 106.8 12.9 104 19-127 6-130 (227)
95 1e4v_A Adenylate kinase; trans 98.9 7.3E-09 2.5E-13 104.3 13.7 101 22-127 2-125 (214)
96 2yvu_A Probable adenylyl-sulfa 98.9 7.4E-09 2.5E-13 101.8 12.8 106 19-124 12-132 (186)
97 2qor_A Guanylate kinase; phosp 98.9 2.2E-09 7.4E-14 107.5 9.0 135 18-164 10-181 (204)
98 1vhu_A Hypothetical protein AF 98.9 2.2E-10 7.4E-15 116.5 0.7 124 188-324 50-190 (211)
99 3vaa_A Shikimate kinase, SK; s 98.9 6.4E-09 2.2E-13 103.7 11.3 135 19-164 24-178 (199)
100 3ejf_A Non-structural protein 98.9 4.5E-10 1.6E-14 110.6 2.8 116 187-323 50-165 (176)
101 2ze6_A Isopentenyl transferase 98.9 4.6E-09 1.6E-13 109.3 10.3 128 21-155 2-167 (253)
102 1x6v_B Bifunctional 3'-phospho 98.9 1.2E-08 3.9E-13 118.9 14.1 106 19-124 51-171 (630)
103 2acf_A Replicase polyprotein 1 98.9 5.3E-10 1.8E-14 110.9 2.5 116 188-328 53-171 (182)
104 2pbr_A DTMP kinase, thymidylat 98.8 1.4E-08 4.8E-13 99.5 11.5 141 22-173 2-182 (195)
105 1njr_A 32.1 kDa protein in ADH 98.8 7.8E-10 2.7E-14 116.7 2.6 116 187-312 86-221 (284)
106 1uj2_A Uridine-cytidine kinase 98.8 2.2E-08 7.5E-13 103.7 12.6 103 16-126 18-172 (252)
107 3uie_A Adenylyl-sulfate kinase 98.8 4E-08 1.4E-12 97.9 13.9 105 16-122 21-140 (200)
108 1m7g_A Adenylylsulfate kinase; 98.8 2.5E-08 8.7E-13 100.2 12.3 106 17-122 22-149 (211)
109 2iyv_A Shikimate kinase, SK; t 98.8 1.3E-08 4.4E-13 99.7 9.6 119 21-149 3-137 (184)
110 3trf_A Shikimate kinase, SK; a 98.8 1.4E-08 4.7E-13 99.3 9.6 121 20-149 5-143 (185)
111 3gpg_A NSP3, non-structural pr 98.8 2E-10 6.7E-15 112.5 -3.8 86 238-325 70-158 (168)
112 1bif_A 6-phosphofructo-2-kinas 98.8 4.3E-08 1.5E-12 110.9 14.6 129 16-144 35-191 (469)
113 1ex7_A Guanylate kinase; subst 98.8 1.6E-08 5.5E-13 100.8 9.0 134 22-168 3-173 (186)
114 3ejg_A Non-structural protein 98.7 9.4E-10 3.2E-14 109.7 -0.6 113 187-325 70-185 (193)
115 2z0h_A DTMP kinase, thymidylat 98.7 3.2E-08 1.1E-12 97.4 9.9 143 22-174 2-183 (197)
116 2wwf_A Thymidilate kinase, put 98.7 1.6E-08 5.3E-13 100.9 6.6 108 18-125 8-151 (212)
117 2bdt_A BH3686; alpha-beta prot 98.7 2.2E-07 7.7E-12 91.2 14.8 106 20-127 2-124 (189)
118 3gqe_A Non-structural protein 98.7 1.2E-09 4.1E-14 106.9 -1.9 86 238-328 64-155 (168)
119 2pez_A Bifunctional 3'-phospho 98.7 1.6E-07 5.4E-12 91.6 12.8 107 19-125 4-125 (179)
120 3iij_A Coilin-interacting nucl 98.7 2.5E-08 8.5E-13 97.3 7.0 97 19-127 10-119 (180)
121 3tr0_A Guanylate kinase, GMP k 98.7 2E-07 6.7E-12 92.4 13.6 134 19-168 6-175 (205)
122 3tau_A Guanylate kinase, GMP k 98.7 7.4E-09 2.5E-13 104.2 3.2 136 18-167 6-176 (208)
123 4eaq_A DTMP kinase, thymidylat 98.6 3.5E-07 1.2E-11 93.7 15.1 156 17-174 23-216 (229)
124 1nn5_A Similar to deoxythymidy 98.6 2E-07 6.9E-12 92.9 12.6 108 18-125 7-150 (215)
125 2pt5_A Shikimate kinase, SK; a 98.6 4.2E-08 1.4E-12 94.3 6.5 97 22-126 2-114 (168)
126 1y63_A LMAJ004144AAA protein; 98.6 2.3E-07 8E-12 91.2 11.8 99 18-127 8-123 (184)
127 2plr_A DTMP kinase, probable t 98.6 3.5E-07 1.2E-11 90.7 13.1 107 20-126 4-144 (213)
128 2if2_A Dephospho-COA kinase; a 98.6 5.4E-08 1.8E-12 96.7 7.0 32 22-56 3-34 (204)
129 1m8p_A Sulfate adenylyltransfe 98.6 1.8E-07 6.3E-12 108.3 12.5 105 17-122 393-513 (573)
130 2f6r_A COA synthase, bifunctio 98.6 2E-07 6.8E-12 98.5 11.5 113 17-147 72-235 (281)
131 1kag_A SKI, shikimate kinase I 98.6 5E-08 1.7E-12 94.2 6.3 121 20-149 4-141 (173)
132 1e6c_A Shikimate kinase; phosp 98.6 1.6E-07 5.6E-12 90.4 9.8 96 21-125 3-116 (173)
133 3a00_A Guanylate kinase, GMP k 98.6 1.2E-07 4.2E-12 93.4 9.1 131 21-167 2-172 (186)
134 2gks_A Bifunctional SAT/APS ki 98.5 2.6E-07 9E-12 106.4 11.9 103 19-123 371-488 (546)
135 1jjv_A Dephospho-COA kinase; P 98.5 4.4E-08 1.5E-12 97.6 4.2 34 20-56 2-35 (206)
136 1via_A Shikimate kinase; struc 98.5 9.5E-08 3.3E-12 92.8 5.8 96 22-126 6-114 (175)
137 1uf9_A TT1252 protein; P-loop, 98.5 1.6E-07 5.4E-12 92.8 7.5 36 18-56 6-41 (203)
138 1nks_A Adenylate kinase; therm 98.5 4E-07 1.4E-11 88.8 10.1 102 21-126 2-140 (194)
139 2qt1_A Nicotinamide riboside k 98.5 3.8E-07 1.3E-11 91.0 9.9 102 16-126 17-151 (207)
140 2bbw_A Adenylate kinase 4, AK4 98.5 7.8E-07 2.7E-11 91.4 12.2 104 19-127 26-150 (246)
141 2jaq_A Deoxyguanosine kinase; 98.4 4.2E-07 1.4E-11 89.6 8.9 102 22-126 2-146 (205)
142 2v54_A DTMP kinase, thymidylat 98.4 2.4E-06 8.1E-11 84.4 12.8 102 19-120 3-137 (204)
143 2j41_A Guanylate kinase; GMP, 98.4 2.1E-06 7.1E-11 84.9 12.2 103 19-127 5-141 (207)
144 2vri_A Non-structural protein 98.4 4.1E-08 1.4E-12 96.8 -0.6 112 188-325 50-164 (174)
145 4i1u_A Dephospho-COA kinase; s 98.4 3.1E-06 1.1E-10 85.7 13.1 109 22-148 11-168 (210)
146 4gua_A Non-structural polyprot 98.3 3.2E-08 1.1E-12 110.4 -2.0 88 239-328 405-495 (670)
147 1vht_A Dephospho-COA kinase; s 98.3 9.9E-07 3.4E-11 88.7 9.1 35 19-56 3-37 (218)
148 1zuh_A Shikimate kinase; alpha 98.3 4.1E-07 1.4E-11 87.6 6.0 95 21-125 8-117 (168)
149 1kht_A Adenylate kinase; phosp 98.3 8.9E-07 3E-11 86.3 8.0 105 20-127 3-140 (192)
150 3ake_A Cytidylate kinase; CMP 98.3 2.2E-06 7.4E-11 84.9 10.8 34 22-57 4-37 (208)
151 1zp6_A Hypothetical protein AT 98.3 4.5E-06 1.5E-10 81.6 12.9 123 19-150 8-146 (191)
152 4edh_A DTMP kinase, thymidylat 98.3 2.7E-06 9.1E-11 86.3 11.4 108 20-127 6-154 (213)
153 1s96_A Guanylate kinase, GMP k 98.3 6.5E-06 2.2E-10 83.8 13.9 136 19-167 15-185 (219)
154 1cke_A CK, MSSA, protein (cyti 98.3 2.2E-06 7.4E-11 86.3 10.0 35 20-56 5-39 (227)
155 3nwj_A ATSK2; P loop, shikimat 98.3 2.3E-06 7.9E-11 89.0 9.7 98 20-126 48-163 (250)
156 3v9p_A DTMP kinase, thymidylat 98.2 1.8E-06 6.2E-11 88.5 8.0 108 19-126 24-173 (227)
157 2grj_A Dephospho-COA kinase; T 98.2 7.2E-07 2.5E-11 89.1 4.7 36 19-56 11-46 (192)
158 3cr8_A Sulfate adenylyltranfer 98.2 3.2E-06 1.1E-10 97.4 10.6 104 19-123 368-487 (552)
159 1rz3_A Hypothetical protein rb 98.2 1.2E-06 4E-11 87.5 6.0 102 17-126 19-165 (201)
160 1kgd_A CASK, peripheral plasma 98.2 6.2E-07 2.1E-11 87.9 3.7 26 20-45 5-30 (180)
161 3lnc_A Guanylate kinase, GMP k 98.2 1.3E-06 4.5E-11 88.7 6.0 138 20-169 27-198 (231)
162 3lv8_A DTMP kinase, thymidylat 98.2 1.3E-05 4.6E-10 82.5 12.9 109 19-127 26-177 (236)
163 4tmk_A Protein (thymidylate ki 98.2 1.7E-05 5.9E-10 80.4 13.5 108 20-127 3-155 (213)
164 3a8t_A Adenylate isopentenyltr 98.1 1.5E-05 5.3E-10 86.1 13.5 105 19-127 39-196 (339)
165 2h92_A Cytidylate kinase; ross 98.1 2.3E-05 7.7E-10 78.5 13.9 35 20-56 3-37 (219)
166 4hlc_A DTMP kinase, thymidylat 98.1 1.1E-05 3.9E-10 81.1 11.3 108 21-128 3-148 (205)
167 1q3t_A Cytidylate kinase; nucl 98.1 2.6E-05 8.8E-10 79.6 13.5 37 18-56 14-50 (236)
168 4e22_A Cytidylate kinase; P-lo 98.1 1.3E-05 4.3E-10 83.0 10.9 36 20-57 27-62 (252)
169 1lvg_A Guanylate kinase, GMP k 98.1 3.8E-05 1.3E-09 76.4 13.8 134 20-169 4-177 (198)
170 1gtv_A TMK, thymidylate kinase 98.1 1.7E-07 5.7E-12 93.6 -3.7 155 22-176 2-207 (214)
171 3hjn_A DTMP kinase, thymidylat 98.0 5.1E-05 1.8E-09 75.8 12.4 106 22-127 2-144 (197)
172 1p5z_B DCK, deoxycytidine kina 97.9 5.3E-06 1.8E-10 86.1 4.6 50 1-51 4-54 (263)
173 3tqc_A Pantothenate kinase; bi 97.9 6E-06 2.1E-10 88.9 5.2 107 17-127 89-249 (321)
174 3r20_A Cytidylate kinase; stru 97.9 4E-05 1.4E-09 78.8 11.1 36 19-56 8-43 (233)
175 3fdi_A Uncharacterized protein 97.9 4.7E-05 1.6E-09 76.3 10.9 98 20-127 6-139 (201)
176 3c8u_A Fructokinase; YP_612366 97.9 3.4E-05 1.2E-09 77.1 9.6 120 17-145 19-184 (208)
177 3ld9_A DTMP kinase, thymidylat 97.9 1.1E-05 3.9E-10 82.4 6.0 109 16-126 17-166 (223)
178 3ney_A 55 kDa erythrocyte memb 97.8 1.9E-05 6.5E-10 79.2 6.3 30 16-45 15-44 (197)
179 1a7j_A Phosphoribulokinase; tr 97.8 2.9E-05 9.9E-10 82.3 7.7 40 19-58 4-46 (290)
180 3crm_A TRNA delta(2)-isopenten 97.8 9.5E-05 3.2E-09 79.5 11.5 36 19-56 4-39 (323)
181 2jyc_A Uncharacterized protein 97.8 2.2E-06 7.5E-11 83.2 -1.7 67 238-306 83-150 (160)
182 3hdt_A Putative kinase; struct 97.7 7.5E-05 2.6E-09 76.2 9.6 100 20-127 14-159 (223)
183 3tmk_A Thymidylate kinase; pho 97.6 4.7E-05 1.6E-09 77.4 6.2 107 19-125 4-147 (216)
184 2eee_A Uncharacterized protein 97.6 4E-06 1.4E-10 80.4 -1.7 66 238-305 72-138 (149)
185 3asz_A Uridine kinase; cytidin 97.6 0.00038 1.3E-08 69.1 12.5 40 18-57 4-43 (211)
186 1sq5_A Pantothenate kinase; P- 97.5 0.00028 9.7E-09 75.1 10.9 39 18-56 78-121 (308)
187 3d3q_A TRNA delta(2)-isopenten 97.5 0.00031 1.1E-08 76.0 10.3 36 19-56 6-41 (340)
188 3exa_A TRNA delta(2)-isopenten 97.5 0.0011 3.6E-08 71.1 13.9 35 20-56 3-37 (322)
189 2jeo_A Uridine-cytidine kinase 97.5 0.00053 1.8E-08 70.2 11.2 40 18-57 23-70 (245)
190 1z6g_A Guanylate kinase; struc 97.5 0.0014 5E-08 65.9 14.2 140 19-174 22-202 (218)
191 2ocp_A DGK, deoxyguanosine kin 97.4 0.00011 3.6E-09 75.2 5.7 27 19-45 1-27 (241)
192 3foz_A TRNA delta(2)-isopenten 97.4 0.0022 7.5E-08 68.5 15.4 38 17-56 7-44 (316)
193 2vp4_A Deoxynucleoside kinase; 97.4 0.0002 6.9E-09 72.7 6.8 26 18-43 18-43 (230)
194 3t15_A Ribulose bisphosphate c 97.4 0.00029 9.9E-09 74.5 7.8 49 18-66 34-82 (293)
195 4b4t_J 26S protease regulatory 97.2 0.00047 1.6E-08 76.2 7.8 58 19-76 181-238 (405)
196 3h4m_A Proteasome-activating n 97.1 0.00077 2.6E-08 70.0 8.3 68 19-86 50-119 (285)
197 4b4t_I 26S protease regulatory 97.1 0.00064 2.2E-08 75.6 7.9 59 19-77 215-273 (437)
198 4b4t_L 26S protease subunit RP 97.1 0.00071 2.4E-08 75.7 8.2 58 19-76 214-271 (437)
199 4b4t_M 26S protease regulatory 97.1 0.00063 2.1E-08 76.0 7.6 56 18-73 213-268 (434)
200 4b4t_K 26S protease regulatory 97.1 0.00078 2.7E-08 75.1 8.2 55 19-73 205-259 (428)
201 4b4t_H 26S protease regulatory 97.0 0.00087 3E-08 75.2 7.8 58 18-75 241-298 (467)
202 3b9p_A CG5977-PA, isoform A; A 97.0 0.0012 4.2E-08 69.0 8.3 68 19-86 53-122 (297)
203 3aez_A Pantothenate kinase; tr 97.0 0.001 3.5E-08 71.2 7.8 40 17-56 87-131 (312)
204 1lv7_A FTSH; alpha/beta domain 96.9 0.0018 6E-08 66.4 8.0 41 20-60 45-85 (257)
205 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0022 7.5E-08 65.4 8.5 69 19-87 38-108 (262)
206 3eie_A Vacuolar protein sortin 96.8 0.0015 5.2E-08 69.6 6.8 67 20-86 51-119 (322)
207 2qp9_X Vacuolar protein sortin 96.8 0.0013 4.6E-08 71.3 6.3 67 20-86 84-152 (355)
208 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.002 6.8E-08 68.9 7.3 68 19-86 44-114 (322)
209 3d8b_A Fidgetin-like protein 1 96.7 0.0026 9E-08 68.9 8.3 67 19-85 116-184 (357)
210 1kjw_A Postsynaptic density pr 96.7 0.0063 2.2E-07 64.5 10.9 25 18-45 103-127 (295)
211 3ec2_A DNA replication protein 96.7 0.00065 2.2E-08 65.8 2.7 80 20-99 38-125 (180)
212 1znw_A Guanylate kinase, GMP k 96.7 0.0043 1.5E-07 61.6 8.7 27 19-45 19-45 (207)
213 3syl_A Protein CBBX; photosynt 96.7 0.0062 2.1E-07 63.7 10.3 68 19-87 66-140 (309)
214 2fg1_A Conserved hypothetical 96.6 0.00071 2.4E-08 65.3 2.4 65 239-304 77-146 (158)
215 3eph_A TRNA isopentenyltransfe 96.6 0.0045 1.5E-07 68.4 8.7 34 20-55 2-35 (409)
216 2x8a_A Nuclear valosin-contain 96.6 0.0033 1.1E-07 65.8 7.3 64 23-86 47-112 (274)
217 1jbk_A CLPB protein; beta barr 96.5 0.0029 1E-07 60.2 6.3 27 18-44 41-67 (195)
218 3dm5_A SRP54, signal recogniti 96.5 0.0089 3.1E-07 66.9 10.9 40 18-57 98-140 (443)
219 1d2n_A N-ethylmaleimide-sensit 96.5 0.014 4.9E-07 60.1 11.7 37 17-53 61-97 (272)
220 3kfv_A Tight junction protein 96.5 0.0082 2.8E-07 64.0 9.9 129 17-168 142-278 (308)
221 1p6x_A Thymidine kinase; P-loo 96.5 0.0046 1.6E-07 66.7 8.0 27 19-45 6-32 (334)
222 3tvt_A Disks large 1 tumor sup 96.4 0.0029 9.8E-08 67.1 5.9 134 18-169 98-266 (292)
223 1ixz_A ATP-dependent metallopr 96.4 0.0047 1.6E-07 63.1 6.9 35 23-57 52-86 (254)
224 3vfd_A Spastin; ATPase, microt 96.3 0.0039 1.3E-07 68.3 6.5 67 20-86 148-216 (389)
225 1g8f_A Sulfate adenylyltransfe 96.3 0.0038 1.3E-07 71.2 6.5 62 19-88 394-460 (511)
226 2kjq_A DNAA-related protein; s 96.3 0.0033 1.1E-07 59.7 5.0 56 19-87 35-93 (149)
227 3ch4_B Pmkase, phosphomevalona 96.3 0.032 1.1E-06 55.9 12.2 102 18-122 9-144 (202)
228 2p65_A Hypothetical protein PF 96.3 0.0031 1.1E-07 60.0 4.6 26 19-44 42-67 (187)
229 2chg_A Replication factor C sm 96.2 0.01 3.6E-07 57.7 8.5 23 22-44 40-62 (226)
230 3cf2_A TER ATPase, transitiona 96.2 0.0047 1.6E-07 74.0 6.8 67 19-85 237-305 (806)
231 3n70_A Transport activator; si 96.2 0.013 4.5E-07 54.8 8.6 70 22-99 26-99 (145)
232 3cf0_A Transitional endoplasmi 96.2 0.002 7E-08 68.0 3.3 36 18-53 47-82 (301)
233 2ce7_A Cell division protein F 96.2 0.008 2.7E-07 67.9 8.3 42 21-62 50-91 (476)
234 3kl4_A SRP54, signal recogniti 96.1 0.013 4.4E-07 65.4 9.4 39 18-56 95-136 (433)
235 3tsz_A Tight junction protein 96.1 0.0093 3.2E-07 65.7 8.1 131 18-167 230-367 (391)
236 2c9o_A RUVB-like 1; hexameric 96.1 0.005 1.7E-07 69.0 5.8 47 20-66 63-111 (456)
237 3hu3_A Transitional endoplasmi 96.0 0.008 2.7E-07 68.2 7.3 67 19-85 237-305 (489)
238 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0065 2.2E-07 65.2 6.2 68 20-87 123-192 (331)
239 1odf_A YGR205W, hypothetical 3 96.0 0.005 1.7E-07 65.1 4.8 41 16-56 27-73 (290)
240 3pfi_A Holliday junction ATP-d 96.0 0.0078 2.7E-07 64.0 6.3 74 20-99 55-129 (338)
241 1iy2_A ATP-dependent metallopr 95.9 0.012 4.2E-07 61.0 7.5 34 23-56 76-109 (278)
242 3shw_A Tight junction protein 95.9 0.0056 1.9E-07 68.9 5.1 150 18-186 222-381 (468)
243 1l8q_A Chromosomal replication 95.8 0.0059 2E-07 64.8 4.6 67 20-86 37-107 (324)
244 1hqc_A RUVB; extended AAA-ATPa 95.8 0.0078 2.7E-07 63.3 5.5 75 20-99 38-113 (324)
245 2zan_A Vacuolar protein sortin 95.8 0.0051 1.7E-07 68.8 4.2 40 19-58 166-206 (444)
246 3bos_A Putative DNA replicatio 95.8 0.0058 2E-07 60.8 4.2 38 19-56 51-91 (242)
247 1c9k_A COBU, adenosylcobinamid 95.8 0.0068 2.3E-07 59.7 4.5 34 22-56 1-34 (180)
248 1um8_A ATP-dependent CLP prote 95.8 0.013 4.4E-07 63.6 7.2 37 20-56 72-108 (376)
249 3czq_A Putative polyphosphate 95.8 0.03 1E-06 59.5 9.7 104 18-128 84-214 (304)
250 2xkx_A Disks large homolog 4; 95.7 0.034 1.2E-06 66.0 11.2 130 19-168 530-696 (721)
251 2j37_W Signal recognition part 95.7 0.047 1.6E-06 62.1 11.8 40 18-57 99-141 (504)
252 3u61_B DNA polymerase accessor 95.7 0.0074 2.5E-07 63.8 4.9 76 18-99 46-129 (324)
253 3hws_A ATP-dependent CLP prote 95.7 0.0066 2.2E-07 65.7 4.5 38 19-56 50-87 (363)
254 2px0_A Flagellar biosynthesis 95.7 0.023 8E-07 60.1 8.7 38 19-56 104-145 (296)
255 3cf2_A TER ATPase, transitiona 95.7 0.0083 2.8E-07 71.9 5.7 59 20-78 511-569 (806)
256 1of1_A Thymidine kinase; trans 95.7 0.11 3.6E-06 56.9 13.9 29 17-45 46-74 (376)
257 1g41_A Heat shock protein HSLU 95.5 0.016 5.4E-07 64.9 7.0 43 20-62 50-93 (444)
258 2qby_B CDC6 homolog 3, cell di 95.5 0.02 6.7E-07 61.6 7.5 27 18-44 43-69 (384)
259 2r62_A Cell division protease 95.5 0.0017 5.9E-08 66.8 -0.9 35 22-56 46-80 (268)
260 2dhr_A FTSH; AAA+ protein, hex 95.4 0.015 5.3E-07 66.0 6.5 40 23-62 67-106 (499)
261 2w58_A DNAI, primosome compone 95.4 0.0066 2.3E-07 59.5 3.0 33 21-53 55-90 (202)
262 2v1u_A Cell division control p 95.4 0.022 7.5E-07 60.9 7.4 27 18-44 42-68 (387)
263 1in4_A RUVB, holliday junction 95.4 0.021 7.1E-07 61.2 7.0 34 20-53 51-84 (334)
264 2v3c_C SRP54, signal recogniti 95.4 0.019 6.5E-07 64.1 6.9 40 18-57 97-139 (432)
265 1njg_A DNA polymerase III subu 95.4 0.014 4.8E-07 57.3 5.3 26 20-45 45-70 (250)
266 1ofh_A ATP-dependent HSL prote 95.3 0.014 4.7E-07 60.7 5.2 39 20-58 50-88 (310)
267 2pof_A CDP-diacylglycerol pyro 95.2 0.02 6.9E-07 57.9 5.8 88 572-663 27-120 (227)
268 2qby_A CDC6 homolog 1, cell di 95.2 0.034 1.2E-06 59.3 7.9 35 18-52 43-83 (386)
269 1ypw_A Transitional endoplasmi 95.1 0.017 6E-07 69.4 6.0 68 19-86 237-306 (806)
270 1fnn_A CDC6P, cell division co 95.1 0.062 2.1E-06 57.5 9.7 31 22-52 46-80 (389)
271 2xxa_A Signal recognition part 95.1 0.16 5.5E-06 56.6 13.2 40 18-57 98-141 (433)
272 1sxj_E Activator 1 40 kDa subu 95.1 0.023 7.7E-07 60.6 6.1 25 19-44 36-60 (354)
273 1e2k_A Thymidine kinase; trans 95.0 0.095 3.2E-06 56.4 10.8 26 20-45 4-29 (331)
274 1j8m_F SRP54, signal recogniti 95.0 0.048 1.6E-06 57.7 8.3 37 20-56 98-137 (297)
275 3co5_A Putative two-component 95.0 0.0094 3.2E-07 55.7 2.5 69 22-99 29-98 (143)
276 3pvs_A Replication-associated 94.9 0.015 5.2E-07 65.1 4.4 76 21-99 51-129 (447)
277 1z84_A Galactose-1-phosphate u 94.9 0.059 2E-06 58.5 8.8 89 582-674 86-201 (351)
278 1vma_A Cell division protein F 94.9 0.02 6.8E-07 61.0 4.9 40 18-57 102-144 (306)
279 2qmh_A HPR kinase/phosphorylas 94.8 0.017 5.9E-07 57.8 4.0 34 20-56 34-67 (205)
280 2z4s_A Chromosomal replication 94.8 0.015 5.2E-07 64.9 3.9 67 20-86 130-203 (440)
281 2cvh_A DNA repair and recombin 94.8 0.021 7.3E-07 56.2 4.5 36 19-54 19-54 (220)
282 3uk6_A RUVB-like 2; hexameric 94.7 0.17 5.8E-06 54.1 11.8 33 20-52 70-104 (368)
283 2chq_A Replication factor C sm 94.7 0.019 6.3E-07 59.9 4.0 101 23-125 41-152 (319)
284 1ye8_A Protein THEP1, hypothet 94.6 0.017 5.7E-07 56.4 3.3 24 22-45 2-25 (178)
285 2yhs_A FTSY, cell division pro 94.5 0.079 2.7E-06 60.0 8.9 39 18-56 291-332 (503)
286 3e70_C DPA, signal recognition 94.5 0.028 9.6E-07 60.4 5.1 40 17-56 126-168 (328)
287 1sxj_C Activator 1 40 kDa subu 94.5 0.028 9.5E-07 60.1 4.9 22 23-44 49-70 (340)
288 1iqp_A RFCS; clamp loader, ext 94.4 0.045 1.5E-06 57.2 6.3 22 23-44 49-70 (327)
289 1sxj_B Activator 1 37 kDa subu 94.4 0.04 1.4E-06 57.4 5.8 22 23-44 45-66 (323)
290 1rim_A E6APC2 peptide; E6-bind 94.4 0.03 1E-06 38.2 3.3 29 714-742 2-30 (33)
291 1klr_A Zinc finger Y-chromosom 94.4 0.033 1.1E-06 36.1 3.3 27 714-740 2-28 (30)
292 4a74_A DNA repair and recombin 94.4 0.022 7.4E-07 56.5 3.5 25 19-43 24-48 (231)
293 1znf_A 31ST zinc finger from X 94.3 0.027 9.2E-07 35.9 2.8 26 714-739 1-26 (27)
294 1srk_A Zinc finger protein ZFP 94.3 0.023 8E-07 38.8 2.6 30 713-742 6-35 (35)
295 2kvh_A Zinc finger and BTB dom 94.3 0.018 6.2E-07 37.0 1.9 26 713-738 2-27 (27)
296 2ehv_A Hypothetical protein PH 94.3 0.021 7.3E-07 57.3 3.3 23 19-41 29-51 (251)
297 2ffh_A Protein (FFH); SRP54, s 94.3 0.19 6.4E-06 55.9 11.1 38 19-56 97-137 (425)
298 4a1f_A DNAB helicase, replicat 94.2 0.12 4E-06 55.8 9.1 34 20-53 46-82 (338)
299 3te6_A Regulatory protein SIR3 94.2 0.12 3.9E-06 55.4 8.9 28 17-44 42-69 (318)
300 1jr3_A DNA polymerase III subu 94.2 0.081 2.8E-06 56.5 7.7 27 19-45 37-63 (373)
301 1sxj_D Activator 1 41 kDa subu 94.1 0.096 3.3E-06 55.4 8.2 22 23-44 61-82 (353)
302 2gza_A Type IV secretion syste 94.1 0.17 5.8E-06 54.9 10.2 125 21-147 176-320 (361)
303 4dey_A Voltage-dependent L-typ 94.1 0.095 3.3E-06 56.3 8.0 133 23-169 145-310 (337)
304 3m6a_A ATP-dependent protease 94.1 0.036 1.2E-06 63.5 5.0 37 19-55 107-143 (543)
305 3hr8_A Protein RECA; alpha and 94.0 0.14 4.9E-06 55.5 9.3 37 19-55 60-99 (356)
306 1ard_A Yeast transcription fac 94.0 0.037 1.3E-06 35.7 2.9 26 714-739 2-27 (29)
307 2r44_A Uncharacterized protein 93.9 0.033 1.1E-06 59.0 4.1 31 22-52 48-78 (331)
308 1htw_A HI0065; nucleotide-bind 93.8 0.042 1.4E-06 52.7 4.2 28 18-45 31-58 (158)
309 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.033 1.1E-06 55.1 3.6 25 19-43 22-46 (235)
310 1rj9_A FTSY, signal recognitio 93.8 0.032 1.1E-06 59.3 3.7 38 19-56 101-141 (304)
311 4fcw_A Chaperone protein CLPB; 93.8 0.046 1.6E-06 57.0 4.9 36 21-56 48-86 (311)
312 3b9q_A Chloroplast SRP recepto 93.8 0.036 1.2E-06 58.8 4.0 27 18-44 98-124 (302)
313 2og2_A Putative signal recogni 93.7 0.047 1.6E-06 59.4 4.9 38 18-55 155-195 (359)
314 1xjc_A MOBB protein homolog; s 93.7 0.036 1.2E-06 53.9 3.5 35 20-54 4-41 (169)
315 1qvr_A CLPB protein; coiled co 93.7 0.075 2.6E-06 64.2 7.0 68 21-88 192-274 (854)
316 3tqf_A HPR(Ser) kinase; transf 93.6 0.045 1.5E-06 53.6 4.0 32 22-56 18-49 (181)
317 2m0d_A Zinc finger and BTB dom 93.6 0.034 1.2E-06 36.0 2.2 27 713-739 2-28 (30)
318 1sxj_A Activator 1 95 kDa subu 93.6 0.044 1.5E-06 62.3 4.6 35 19-53 76-110 (516)
319 1tue_A Replication protein E1; 93.6 0.029 9.9E-07 56.5 2.7 26 20-45 58-83 (212)
320 2elx_A Zinc finger protein 406 93.6 0.038 1.3E-06 37.5 2.5 29 713-741 6-34 (35)
321 3p32_A Probable GTPase RV1496/ 93.5 0.072 2.5E-06 57.6 5.8 38 17-54 76-116 (355)
322 1np6_A Molybdopterin-guanine d 93.5 0.042 1.4E-06 53.6 3.5 25 20-44 6-30 (174)
323 2elo_A Zinc finger protein 406 93.4 0.035 1.2E-06 38.4 2.2 29 713-741 8-36 (37)
324 2m0e_A Zinc finger and BTB dom 93.4 0.04 1.4E-06 35.3 2.3 26 714-739 2-27 (29)
325 2kvg_A Zinc finger and BTB dom 93.4 0.025 8.4E-07 36.5 1.2 25 713-737 2-26 (27)
326 1oix_A RAS-related protein RAB 93.4 0.047 1.6E-06 53.0 3.7 26 19-44 28-53 (191)
327 1yrb_A ATP(GTP)binding protein 93.4 0.076 2.6E-06 53.9 5.4 37 19-55 13-51 (262)
328 2kvf_A Zinc finger and BTB dom 93.3 0.037 1.3E-06 35.6 2.0 26 713-738 2-27 (28)
329 1n0w_A DNA repair protein RAD5 93.3 0.041 1.4E-06 55.0 3.3 25 19-43 23-47 (243)
330 1svm_A Large T antigen; AAA+ f 93.3 0.045 1.5E-06 60.0 3.8 29 17-45 166-194 (377)
331 1rik_A E6APC1 peptide; E6-bind 93.3 0.034 1.2E-06 35.9 1.8 26 714-739 2-27 (29)
332 1xp8_A RECA protein, recombina 93.2 0.13 4.6E-06 55.9 7.5 36 20-55 74-112 (366)
333 1a5t_A Delta prime, HOLB; zinc 93.1 0.29 1E-05 52.1 9.9 29 17-45 21-49 (334)
334 2bjv_A PSP operon transcriptio 93.1 0.069 2.4E-06 54.6 4.8 35 21-55 30-67 (265)
335 3rhf_A Putative polyphosphate 93.1 0.065 2.2E-06 56.4 4.5 106 18-129 73-204 (289)
336 2ga8_A Hypothetical 39.9 kDa p 93.1 0.048 1.6E-06 59.2 3.6 28 18-45 22-49 (359)
337 1ypw_A Transitional endoplasmi 93.1 0.019 6.5E-07 69.1 0.5 45 19-63 510-554 (806)
338 2eyu_A Twitching motility prot 93.1 0.06 2.1E-06 55.8 4.2 27 18-44 23-49 (261)
339 2dr3_A UPF0273 protein PH0284; 93.1 0.051 1.8E-06 54.3 3.6 25 19-43 22-46 (247)
340 1zu4_A FTSY; GTPase, signal re 93.0 0.075 2.6E-06 56.8 5.0 39 18-56 103-144 (320)
341 1cr0_A DNA primase/helicase; R 93.0 0.046 1.6E-06 57.1 3.2 25 19-43 34-58 (296)
342 2eom_A ZFP-95, zinc finger pro 93.0 0.075 2.6E-06 38.9 3.5 30 713-742 11-40 (46)
343 1njq_A Superman protein; zinc- 93.0 0.049 1.7E-06 38.3 2.4 30 713-742 5-34 (39)
344 3pxg_A Negative regulator of g 92.9 0.059 2E-06 60.5 4.2 24 21-44 202-225 (468)
345 1u94_A RECA protein, recombina 92.9 0.21 7E-06 54.2 8.3 37 19-55 62-101 (356)
346 2eq2_A Zinc finger protein 347 92.9 0.092 3.2E-06 38.3 3.8 30 713-742 11-40 (46)
347 2yti_A Zinc finger protein 347 92.8 0.088 3E-06 38.4 3.7 30 713-742 11-40 (46)
348 1osn_A Thymidine kinase, VZV-T 92.8 0.19 6.6E-06 54.2 7.9 27 19-45 11-38 (341)
349 2i3b_A HCR-ntpase, human cance 92.8 0.051 1.8E-06 53.6 3.0 23 22-44 3-25 (189)
350 3czp_A Putative polyphosphate 92.8 0.053 1.8E-06 61.5 3.5 108 17-129 40-172 (500)
351 2f1r_A Molybdopterin-guanine d 92.7 0.036 1.2E-06 53.9 1.8 25 21-45 3-27 (171)
352 3tif_A Uncharacterized ABC tra 92.7 0.047 1.6E-06 55.6 2.8 26 19-44 30-55 (235)
353 2enf_A Zinc finger protein 347 92.7 0.083 2.9E-06 38.5 3.4 30 713-742 11-40 (46)
354 2elr_A Zinc finger protein 406 92.7 0.074 2.5E-06 36.4 2.9 27 713-739 8-34 (36)
355 2r6a_A DNAB helicase, replicat 92.7 0.62 2.1E-05 51.9 12.1 34 20-53 203-240 (454)
356 2em6_A Zinc finger protein 224 92.7 0.085 2.9E-06 38.5 3.5 30 713-742 11-40 (46)
357 2ep1_A Zinc finger protein 484 92.7 0.1 3.5E-06 37.9 3.9 30 713-742 11-40 (46)
358 2yte_A Zinc finger protein 473 92.7 0.089 3E-06 37.4 3.5 30 713-742 9-38 (42)
359 2emg_A Zinc finger protein 484 92.7 0.089 3.1E-06 38.3 3.5 30 713-742 11-40 (46)
360 2onk_A Molybdate/tungstate ABC 92.6 0.057 1.9E-06 55.3 3.2 24 21-44 25-48 (240)
361 2en7_A Zinc finger protein 268 92.6 0.092 3.1E-06 37.7 3.5 30 713-742 11-40 (44)
362 2eoh_A Zinc finger protein 28 92.6 0.1 3.5E-06 38.1 3.8 30 713-742 11-40 (46)
363 2m0f_A Zinc finger and BTB dom 92.5 0.039 1.3E-06 35.4 1.2 26 714-739 2-27 (29)
364 3pxi_A Negative regulator of g 92.5 0.14 4.8E-06 60.9 6.9 63 22-86 523-588 (758)
365 1nlf_A Regulatory protein REPA 92.5 0.06 2.1E-06 55.8 3.2 24 20-43 30-53 (279)
366 2r2a_A Uncharacterized protein 92.5 0.072 2.4E-06 53.1 3.6 25 19-43 4-28 (199)
367 2pcj_A ABC transporter, lipopr 92.5 0.054 1.8E-06 54.8 2.7 23 21-43 31-53 (224)
368 2eon_A ZFP-95, zinc finger pro 92.5 0.084 2.9E-06 38.6 3.1 30 713-742 11-40 (46)
369 2fna_A Conserved hypothetical 92.4 0.26 8.9E-06 51.7 8.1 35 21-55 31-65 (357)
370 2eoq_A Zinc finger protein 224 92.4 0.11 3.8E-06 37.8 3.8 30 713-742 11-40 (46)
371 2ytb_A Zinc finger protein 32; 92.4 0.076 2.6E-06 37.7 2.8 30 713-742 10-39 (42)
372 2q6t_A DNAB replication FORK h 92.4 0.45 1.5E-05 52.8 10.5 34 20-53 200-237 (444)
373 2emk_A Zinc finger protein 28 92.4 0.098 3.4E-06 38.2 3.4 30 713-742 11-40 (46)
374 2ytr_A Zinc finger protein 347 92.4 0.11 3.6E-06 37.9 3.6 30 713-742 11-40 (46)
375 1p7a_A BF3, BKLF, kruppel-like 92.4 0.095 3.2E-06 36.1 3.2 27 713-739 10-36 (37)
376 2eq1_A Zinc finger protein 347 92.4 0.11 3.6E-06 37.9 3.6 30 713-742 11-40 (46)
377 2elt_A Zinc finger protein 406 92.4 0.057 2E-06 36.9 2.0 27 713-739 8-34 (36)
378 2elq_A Zinc finger protein 406 92.3 0.064 2.2E-06 36.8 2.2 27 713-739 8-34 (36)
379 2v9p_A Replication protein E1; 92.3 0.066 2.3E-06 56.9 3.4 26 19-44 125-150 (305)
380 3sig_A PArg, poly(ADP-ribose) 92.3 0.068 2.3E-06 55.9 3.3 46 260-306 197-242 (277)
381 2wsm_A Hydrogenase expression/ 92.3 0.13 4.6E-06 50.6 5.4 36 19-54 29-66 (221)
382 2eos_A B-cell lymphoma 6 prote 92.3 0.091 3.1E-06 37.5 3.1 30 713-742 10-39 (42)
383 2ept_A Zinc finger protein 32; 92.3 0.071 2.4E-06 37.9 2.5 30 713-742 9-38 (41)
384 1r6b_X CLPA protein; AAA+, N-t 92.3 0.16 5.4E-06 60.4 6.9 70 19-88 206-289 (758)
385 2em0_A Zinc finger protein 224 92.3 0.11 3.9E-06 37.8 3.7 30 713-742 11-40 (46)
386 2ytn_A Zinc finger protein 347 92.3 0.11 3.6E-06 37.9 3.5 30 713-742 11-40 (46)
387 1dek_A Deoxynucleoside monopho 92.3 0.1 3.5E-06 53.6 4.6 30 21-52 2-31 (241)
388 2yrm_A B-cell lymphoma 6 prote 92.3 0.099 3.4E-06 37.7 3.3 30 713-742 9-38 (43)
389 2en9_A Zinc finger protein 28 92.3 0.095 3.2E-06 38.3 3.2 30 713-742 11-40 (46)
390 2el5_A Zinc finger protein 268 92.2 0.079 2.7E-06 37.8 2.7 30 713-742 9-38 (42)
391 1paa_A Yeast transcription fac 92.2 0.095 3.3E-06 34.0 2.9 26 714-739 2-28 (30)
392 2eop_A Zinc finger protein 268 92.2 0.11 3.6E-06 37.8 3.4 30 713-742 11-40 (46)
393 2orw_A Thymidine kinase; TMTK, 92.2 0.08 2.7E-06 51.8 3.5 24 21-44 4-27 (184)
394 2epc_A Zinc finger protein 32; 92.2 0.077 2.6E-06 37.7 2.5 30 713-742 10-39 (42)
395 2eou_A Zinc finger protein 473 92.2 0.11 3.8E-06 37.5 3.4 30 713-742 11-40 (44)
396 2enh_A Zinc finger protein 28 92.2 0.11 3.7E-06 37.9 3.4 30 713-742 11-40 (46)
397 2eov_A Zinc finger protein 484 92.1 0.1 3.6E-06 37.9 3.3 30 713-742 11-40 (46)
398 2yth_A Zinc finger protein 224 92.1 0.11 3.9E-06 37.8 3.5 30 713-742 11-40 (46)
399 2lvu_A Zinc finger and BTB dom 91.4 0.027 9.2E-07 35.7 0.0 24 714-737 2-25 (26)
400 2ytp_A Zinc finger protein 484 92.1 0.077 2.6E-06 38.8 2.5 30 713-742 11-40 (46)
401 2cbz_A Multidrug resistance-as 92.1 0.065 2.2E-06 54.7 2.8 24 20-43 31-54 (237)
402 2elv_A Zinc finger protein 406 92.0 0.071 2.4E-06 36.6 2.2 27 713-739 8-34 (36)
403 3bh0_A DNAB-like replicative h 92.0 0.38 1.3E-05 51.0 8.8 35 19-53 67-104 (315)
404 2lvt_A Zinc finger and BTB dom 91.3 0.028 9.7E-07 36.5 0.0 26 714-739 2-27 (29)
405 2ytq_A Zinc finger protein 268 92.0 0.12 4.1E-06 37.7 3.5 30 713-742 11-40 (46)
406 2els_A Zinc finger protein 406 92.0 0.066 2.3E-06 36.8 1.9 27 713-739 8-34 (36)
407 3gfo_A Cobalt import ATP-bindi 92.0 0.066 2.3E-06 56.0 2.8 24 21-44 35-58 (275)
408 4g1u_C Hemin import ATP-bindin 92.0 0.067 2.3E-06 55.7 2.8 23 21-43 38-60 (266)
409 3b85_A Phosphate starvation-in 92.0 0.062 2.1E-06 53.8 2.4 23 21-43 23-45 (208)
410 2eq4_A Zinc finger protein 224 92.0 0.12 4E-06 37.6 3.4 30 713-742 11-40 (46)
411 3iev_A GTP-binding protein ERA 91.9 0.5 1.7E-05 49.8 9.6 28 16-43 6-33 (308)
412 2qm8_A GTPase/ATPase; G protei 91.9 0.15 5.1E-06 54.8 5.5 38 17-54 52-92 (337)
413 2eoe_A Zinc finger protein 347 91.9 0.089 3.1E-06 38.3 2.6 30 713-742 11-40 (46)
414 2yts_A Zinc finger protein 484 91.9 0.084 2.9E-06 38.4 2.5 30 713-742 11-40 (46)
415 2ytf_A Zinc finger protein 268 91.8 0.081 2.8E-06 38.5 2.4 30 713-742 11-40 (46)
416 2eow_A Zinc finger protein 347 91.8 0.076 2.6E-06 38.7 2.2 30 713-742 11-40 (46)
417 2elz_A Zinc finger protein 224 91.8 0.12 4.2E-06 37.7 3.3 30 713-742 11-40 (46)
418 2d2e_A SUFC protein; ABC-ATPas 91.8 0.085 2.9E-06 54.2 3.3 23 21-43 30-52 (250)
419 1mv5_A LMRA, multidrug resista 91.8 0.085 2.9E-06 53.9 3.3 25 19-43 27-51 (243)
420 2epz_A Zinc finger protein 28 91.8 0.13 4.4E-06 37.5 3.4 30 713-742 11-40 (46)
421 2eq3_A Zinc finger protein 347 91.8 0.086 3E-06 38.3 2.5 30 713-742 11-40 (46)
422 1b0u_A Histidine permease; ABC 91.8 0.072 2.5E-06 55.2 2.8 26 19-44 31-56 (262)
423 2epv_A Zinc finger protein 268 91.7 0.095 3.2E-06 37.9 2.6 30 713-742 11-40 (44)
424 2eq0_A Zinc finger protein 347 91.7 0.086 2.9E-06 38.4 2.4 30 713-742 11-40 (46)
425 2lvr_A Zinc finger and BTB dom 91.0 0.032 1.1E-06 36.3 0.0 26 714-739 3-28 (30)
426 3kta_A Chromosome segregation 91.7 0.11 3.6E-06 49.9 3.7 26 20-45 26-51 (182)
427 2ytm_A Zinc finger protein 28 91.7 0.095 3.2E-06 38.3 2.6 30 713-742 11-40 (46)
428 2eml_A Zinc finger protein 28 91.6 0.099 3.4E-06 38.1 2.7 30 713-742 11-40 (46)
429 1ji0_A ABC transporter; ATP bi 91.6 0.077 2.6E-06 54.2 2.8 24 21-44 33-56 (240)
430 2emi_A Zinc finger protein 484 91.6 0.099 3.4E-06 38.1 2.6 30 713-742 11-40 (46)
431 3pxi_A Negative regulator of g 91.6 0.1 3.5E-06 62.1 4.2 23 22-44 203-225 (758)
432 2gno_A DNA polymerase III, gam 91.6 0.5 1.7E-05 50.0 9.1 90 20-114 18-121 (305)
433 1g6h_A High-affinity branched- 91.6 0.078 2.7E-06 54.7 2.8 24 21-44 34-57 (257)
434 2ff7_A Alpha-hemolysin translo 91.6 0.078 2.7E-06 54.4 2.8 25 20-44 35-59 (247)
435 1sp2_A SP1F2; zinc finger, tra 91.6 0.14 4.7E-06 33.8 3.1 26 714-739 2-29 (31)
436 2hf9_A Probable hydrogenase ni 91.6 0.18 6.3E-06 49.7 5.4 36 19-54 37-74 (226)
437 2ep3_A Zinc finger protein 484 91.5 0.093 3.2E-06 38.2 2.4 30 713-742 11-40 (46)
438 2zu0_C Probable ATP-dependent 91.5 0.093 3.2E-06 54.5 3.3 24 20-43 46-69 (267)
439 2ep2_A Zinc finger protein 484 91.5 0.097 3.3E-06 38.1 2.5 30 713-742 11-40 (46)
440 2zts_A Putative uncharacterize 91.5 0.11 3.6E-06 52.1 3.6 36 19-54 29-68 (251)
441 2em5_A ZFP-95, zinc finger pro 91.5 0.097 3.3E-06 38.2 2.5 30 713-742 11-40 (46)
442 2olj_A Amino acid ABC transpor 91.4 0.082 2.8E-06 54.9 2.8 26 19-44 49-74 (263)
443 2yrj_A Zinc finger protein 473 91.4 0.095 3.3E-06 38.1 2.4 30 713-742 11-40 (46)
444 2em4_A Zinc finger protein 28 91.4 0.087 3E-06 38.5 2.2 30 713-742 11-40 (46)
445 2emm_A ZFP-95, zinc finger pro 91.4 0.093 3.2E-06 38.2 2.3 30 713-742 11-40 (46)
446 1g8p_A Magnesium-chelatase 38 91.4 0.061 2.1E-06 57.0 1.8 23 23-45 48-70 (350)
447 2emy_A Zinc finger protein 268 91.4 0.09 3.1E-06 38.3 2.2 30 713-742 11-40 (46)
448 2pze_A Cystic fibrosis transme 91.4 0.084 2.9E-06 53.5 2.8 24 21-44 35-58 (229)
449 1sgw_A Putative ABC transporte 91.4 0.071 2.4E-06 53.7 2.2 24 21-44 36-59 (214)
450 2ce2_X GTPase HRAS; signaling 91.4 0.1 3.6E-06 47.8 3.2 23 21-43 4-26 (166)
451 2ewv_A Twitching motility prot 91.4 0.12 4E-06 56.5 4.0 26 19-44 135-160 (372)
452 2ely_A Zinc finger protein 224 91.4 0.13 4.3E-06 37.6 3.0 30 713-742 11-40 (46)
453 2em3_A Zinc finger protein 28 91.4 0.096 3.3E-06 38.2 2.3 30 713-742 11-40 (46)
454 2emx_A Zinc finger protein 268 91.3 0.088 3E-06 38.0 2.1 30 713-742 9-38 (44)
455 1zfd_A SWI5; DNA binding motif 91.3 0.15 5.3E-06 33.7 3.2 27 713-739 2-30 (32)
456 2wji_A Ferrous iron transport 91.3 0.12 4.1E-06 48.5 3.6 22 21-42 4-25 (165)
457 2dyk_A GTP-binding protein; GT 91.3 0.11 3.7E-06 47.9 3.2 21 23-43 4-24 (161)
458 1lw7_A Transcriptional regulat 91.3 0.11 3.9E-06 56.1 3.8 26 20-45 170-195 (365)
459 2emf_A Zinc finger protein 484 91.3 0.1 3.6E-06 38.0 2.5 30 713-742 11-40 (46)
460 2f9l_A RAB11B, member RAS onco 91.3 0.11 3.6E-06 50.6 3.2 23 21-43 6-28 (199)
461 3jvv_A Twitching mobility prot 91.3 0.11 3.7E-06 56.5 3.6 26 19-44 122-147 (356)
462 1nij_A Hypothetical protein YJ 91.3 0.12 4.2E-06 54.8 4.0 24 21-44 5-28 (318)
463 1v5w_A DMC1, meiotic recombina 91.3 0.18 6.1E-06 54.2 5.3 25 19-43 121-145 (343)
464 2el4_A Zinc finger protein 268 91.3 0.11 3.6E-06 37.9 2.5 30 713-742 11-40 (46)
465 2emj_A Zinc finger protein 28 91.2 0.093 3.2E-06 38.3 2.2 30 713-742 11-40 (46)
466 2emb_A Zinc finger protein 473 91.2 0.11 3.7E-06 37.5 2.5 30 713-742 11-40 (44)
467 1vpl_A ABC transporter, ATP-bi 91.2 0.089 3.1E-06 54.4 2.8 25 20-44 41-65 (256)
468 2ixe_A Antigen peptide transpo 91.2 0.09 3.1E-06 54.8 2.8 26 19-44 44-69 (271)
469 2ene_A Zinc finger protein 347 91.2 0.11 3.7E-06 37.9 2.5 30 713-742 11-40 (46)
470 2epu_A Zinc finger protein 32; 91.2 0.08 2.7E-06 38.5 1.7 29 713-741 11-39 (45)
471 2eme_A Zinc finger protein 473 91.2 0.12 4E-06 37.6 2.7 30 713-742 11-40 (46)
472 2eof_A Zinc finger protein 268 91.2 0.11 3.7E-06 37.4 2.4 30 713-742 11-40 (44)
473 2kfq_A FP1; protein, de novo p 91.1 0.02 6.9E-07 38.7 -1.5 29 714-742 2-30 (32)
474 2eoj_A Zinc finger protein 268 91.1 0.11 3.6E-06 37.5 2.3 29 713-741 11-39 (44)
475 3sop_A Neuronal-specific septi 91.1 0.097 3.3E-06 54.5 2.9 23 22-44 4-26 (270)
476 2ghi_A Transport protein; mult 91.1 0.093 3.2E-06 54.3 2.8 25 20-44 46-70 (260)
477 1z2a_A RAS-related protein RAB 91.1 0.14 4.8E-06 47.4 3.8 24 20-43 5-28 (168)
478 3bgw_A DNAB-like replicative h 91.1 0.47 1.6E-05 52.9 8.6 35 19-53 196-233 (444)
479 2eln_A Zinc finger protein 406 91.1 0.092 3.2E-06 37.9 1.9 27 713-739 8-36 (38)
480 2yz2_A Putative ABC transporte 91.1 0.095 3.2E-06 54.4 2.8 25 20-44 33-57 (266)
481 2z43_A DNA repair and recombin 91.1 0.16 5.4E-06 54.1 4.6 25 20-44 107-131 (324)
482 2en8_A Zinc finger protein 224 91.1 0.1 3.6E-06 37.9 2.3 30 713-742 11-40 (46)
483 2elp_A Zinc finger protein 406 91.0 0.074 2.5E-06 36.7 1.4 27 713-739 8-35 (37)
484 2emz_A ZFP-95, zinc finger pro 91.0 0.1 3.5E-06 38.1 2.2 28 713-740 11-38 (46)
485 1ls1_A Signal recognition part 91.0 0.17 5.9E-06 53.3 4.8 38 19-56 97-137 (295)
486 2ytj_A Zinc finger protein 484 91.0 0.12 4.1E-06 37.6 2.6 30 713-742 11-40 (46)
487 2qi9_C Vitamin B12 import ATP- 91.0 0.096 3.3E-06 53.9 2.8 24 21-44 27-50 (249)
488 2em9_A Zinc finger protein 224 91.0 0.12 4.1E-06 37.6 2.5 30 713-742 11-40 (46)
489 2epx_A Zinc finger protein 28 91.0 0.17 5.8E-06 36.8 3.4 30 713-742 11-41 (47)
490 1x3c_A Zinc finger protein 292 91.0 0.21 7.3E-06 41.5 4.2 38 713-750 26-66 (73)
491 2p67_A LAO/AO transport system 91.0 0.21 7.1E-06 53.6 5.4 39 17-55 53-94 (341)
492 2epw_A Zinc finger protein 268 90.9 0.12 4.1E-06 37.6 2.5 30 713-742 11-40 (46)
493 2em2_A Zinc finger protein 28 90.9 0.11 3.7E-06 37.9 2.3 30 713-742 11-40 (46)
494 2ihy_A ABC transporter, ATP-bi 90.9 0.098 3.4E-06 54.8 2.8 24 21-44 48-71 (279)
495 1u8z_A RAS-related protein RAL 90.9 0.12 4.3E-06 47.5 3.2 23 21-43 5-27 (168)
496 2eor_A Zinc finger protein 224 90.9 0.085 2.9E-06 38.4 1.6 30 713-742 11-40 (46)
497 2epp_A POZ-, at HOOK-, and zin 90.8 0.14 4.9E-06 41.7 3.1 28 713-740 12-39 (66)
498 2enc_A Zinc finger protein 224 90.8 0.12 4.2E-06 37.6 2.5 30 713-742 11-40 (46)
499 2ytg_A ZFP-95, zinc finger pro 90.8 0.092 3.2E-06 38.3 1.7 30 713-742 11-40 (46)
500 1ek0_A Protein (GTP-binding pr 90.8 0.13 4.5E-06 47.5 3.2 23 21-43 4-26 (170)
No 1
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=100.00 E-value=2.4e-49 Score=396.53 Aligned_cols=173 Identities=27% Similarity=0.457 Sum_probs=147.7
Q ss_pred cchhHHHHHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCH---HHHHHHHHHHHHHH-HH
Q 004319 557 WGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRN---EHLQILQTMHAVGM-KW 632 (761)
Q Consensus 557 ~~~w~~~L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~---e~l~lL~~m~~~~~-~~ 632 (761)
-.+||++|+.||.+||++|. +|||||.++||+|+||+|++|+||||| +|+.++.++.+ ++.+++.+|..++. +.
T Consensus 3 ~msw~~~L~~yi~~Pe~~p~-~v~edd~~~af~D~~P~a~~H~LVIPk-~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~ 80 (204)
T 3sp4_A 3 HMSFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTR-DPHLTHVHPLEIMMKHRSLVEKLVSYVQGDL 80 (204)
T ss_dssp CCSGGGTTHHHHHCGGGCTT-EEEECSSEEEEECSSCSSSSEEEEEEC-CTTTTTSCHHHHHHHCHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHhcChhhCCC-EEEEcCCEEEEeCCCCCCCccEEEEec-cccCcccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 35799999999999999999 999999999999999999999999999 79999886554 46888999999888 64
Q ss_pred HHHhhc------------cCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcC
Q 004319 633 AEKFLH------------EDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHG 700 (761)
Q Consensus 633 ~~~~~~------------~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g 700 (761)
+++... .+....|++|||++|||+||||||||+||+|++||+|||||||||+|||+++ ..|+..+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~i~~GfHa~PSm~HLHLHVIS~Df~s~~lK~kkH~NSF~T~fFv~~~---~~l~~~~ 157 (204)
T 3sp4_A 81 SGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKID---TPTSNLP 157 (204)
T ss_dssp HHHHHHHHHHHSCTTCCHHHHHTTEEEEEESSCSSSSCCEEEEESCCCCTTCCSHHHHHHHHSTTEEETT---CCGGGCC
T ss_pred HHHHHhhhhhhhcccCCcCCeeeeEeccCCCCCcccceeEEEeccCCCChhhCccchhcccChhhhccch---hhhhhcc
Confidence 443221 1112379999999999999999999999999999999999999999999999 2345555
Q ss_pred CCCccchhhhc-cCCcccccCCCCCCC-hHHHHHHHhhc
Q 004319 701 KATLKDYDSLL-SMELRCHRCRSAHPS-IPRLKSHISSC 737 (761)
Q Consensus 701 ~~~~~~~~~~l-~~~l~C~~C~~~~~n-~~~LK~Hl~~~ 737 (761)
+.... .+| ++||+||+|+++|+| ||+||+||+.+
T Consensus 158 ~~~~~---~~l~~~~L~C~~C~~~f~n~~~~LK~HL~~e 193 (204)
T 3sp4_A 158 TRGTL---TSLFQEDLKCWRCGETFGRHFTKLKAHLQEE 193 (204)
T ss_dssp CGGGG---GGGGGSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred ccCHh---hhhcCCCceeCCCCchhhcccHHHHHHHHHH
Confidence 43322 556 999999999999999 99999999865
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=236.94 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=106.6
Q ss_pred cccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCCEEEecCC
Q 004319 338 KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLP 415 (761)
Q Consensus 338 ~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~--~~~~~G~avvT~l~ 415 (761)
.+.+|.+|+|++||||++. +||||||||..|.+++|||++||+++||++|++||+++. +.+++|++++|+
T Consensus 34 ~t~~g~~I~i~~GDIt~~~------vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~-- 105 (221)
T 3q71_A 34 VSPGGLQMLLVKEGVQNAK------TDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTS-- 105 (221)
T ss_dssp ECTTCCEEEEEESCGGGCC------SSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEE--
T ss_pred eecCCcEEEEEeCcccCCc------CCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEc--
Confidence 4778999999999999997 999999999999647899999999999999999999974 479999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||.|+... ....++|++||++||++| .|||||+++
T Consensus 106 -----g~~Lp~k~VIHtVgP~~~~~~--------~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIs 158 (221)
T 3q71_A 106 -----SWNLDCRYVLHVVAPEWRNGS--------TSSLKIMEDIIRECMEITESLSLKSIAFPAIG 158 (221)
T ss_dssp -----CTTSSSSEEEEECCCCCTTTC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred -----CCCCCCCEEEEeCCCCCcCCC--------chHHHHHHHHHHHHHHHHHHhCCceEeecccc
Confidence 588999999999999997642 245789999999999987 499999997
No 3
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=99.93 E-value=3.9e-27 Score=231.11 Aligned_cols=109 Identities=27% Similarity=0.273 Sum_probs=100.0
Q ss_pred eEEEEEEccccc----ccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 004319 343 KKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP 415 (761)
Q Consensus 343 ~~l~v~~GDIt~----~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~ 415 (761)
.+|++++||||+ +. +||||||||+.|. +||||++||+++||++|++||+++. ++|++|++++|+
T Consensus 10 ~~i~l~~GDIt~~~~~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-- 80 (168)
T 3eti_A 10 GKVSFYQGDLDVLINFLE------PDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFE-- 80 (168)
T ss_dssp TTEEEEESCHHHHHHHHC------CSEEEEEECTTCC-CCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEE--
T ss_pred CeEEEEeCcccccCCCCC------CCEEEeCCCcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEec--
Confidence 578999999999 65 9999999999999 8999999999999999999999974 789999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476 (761)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~ 476 (761)
++ |+|+||||+|||.|+.. +..++|++||+++|+.+.|||||++|
T Consensus 81 -----g~-l~~~~VIHtVgP~~~~~----------~~~~~L~~~y~~~L~~~~SIAfP~Is 125 (168)
T 3eti_A 81 -----NV-LEHLSVMNAVGPRNGDS----------RVEGKLCNVYKAIAKCDGKILTPLIS 125 (168)
T ss_dssp -----EE-ETTEEEEEEECCCTTST----------THHHHHHHHHHHHHTSCSCEEECCTT
T ss_pred -----CC-CCccEEEEecCCCCCcc----------hHHHHHHHHHHHHHHhcCceeecccc
Confidence 36 88899999999999542 35789999999999999999999997
No 4
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=99.93 E-value=2.1e-26 Score=234.46 Aligned_cols=117 Identities=31% Similarity=0.367 Sum_probs=105.4
Q ss_pred ccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 004319 339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP 415 (761)
Q Consensus 339 ~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~ 415 (761)
..+|.+|+|++||||++. +||||||||+.|. ++|||++||+++||++|++||+++. +.+++|++++|+
T Consensus 33 ~~~g~~I~v~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-- 103 (214)
T 3q6z_A 33 LAPGVVLIVQQGDLARLP------VDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISK-- 103 (214)
T ss_dssp EETTEEEEEEECCTTSCS------SSEEEEEECTTCC-CCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEE--
T ss_pred cCCCcEEEEEecccccCc------CCEEEeCCCCCCC-CCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEc--
Confidence 456899999999999997 9999999999999 8999999999999999999999874 789999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||.|+... ..+..++|++||++||++| .|||||+++
T Consensus 104 -----~~~L~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~Is 157 (214)
T 3q6z_A 104 -----AGKLPYHHVIHAVGPRWSGYE-------APRCVYLLRRAVQLSLCLAEKYKYRSIAIPAIS 157 (214)
T ss_dssp -----CTTSSSSEEEEEECCCCCGGG-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred -----CCCCCCCEEEEecCCcccCCC-------cchHHHHHHHHHHHHHHHHHHcCCcEEEECccc
Confidence 588999999999999997532 1235689999999999997 499999997
No 5
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=99.93 E-value=1.6e-25 Score=223.42 Aligned_cols=112 Identities=34% Similarity=0.439 Sum_probs=102.1
Q ss_pred eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCC
Q 004319 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP 419 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~ 419 (761)
.+|+|++||||++. +|||||+||+.|. +||||++||+++||++|++||+++. +.+++|++++|+
T Consensus 3 ~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~------ 69 (184)
T 1spv_A 3 TRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL------ 69 (184)
T ss_dssp CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC------
T ss_pred CeEEEEeCcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEee------
Confidence 57899999999996 9999999999999 8999999999999999999999974 789999999999
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 420 ~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|++|||+|||.|+.... ...++|++||++||++| .|||||+++
T Consensus 70 -~~~L~~k~VIH~vgP~~~~~~~--------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is 122 (184)
T 1spv_A 70 -AGDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAIS 122 (184)
T ss_dssp -CTTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred -CCCCCCCEEEEEcCCcccCCCc--------chHHHHHHHHHHHHHHHHHhCCceEEecccc
Confidence 5889999999999999976432 35789999999999997 499999886
No 6
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=224.30 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=103.1
Q ss_pred cCCeEEEEEEcccccc---cccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 004319 340 INPKKFFTFVGDITRL---YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP 413 (761)
Q Consensus 340 ~~~~~l~v~~GDIt~~---~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~ 413 (761)
..+.+|+|++||||++ . +|||||+||+.|. +||||++||+++||++|++||+++. +.|++|++++|+
T Consensus 16 ~~~~~i~i~~GDIt~~~~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~ 88 (193)
T 2xd7_A 16 VLGQKLSLTQSDISHIGSMR------VEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ 88 (193)
T ss_dssp TTSCEEEEEECCGGGGGGCC------CSEEEEEECTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CCCCEEEEEeCcccccCCCC------CCEEEECCCccCC-CccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence 4568999999999999 6 9999999999999 8999999999999999999999863 789999999999
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||.|+.. ...++|++||++||++| .|||||+++
T Consensus 89 -------~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is 139 (193)
T 2xd7_A 89 -------SSGLAAKFVIHCHIPQWGSD----------KCEEQLEETIKNCLSAAEDKKLKSVAFPPFP 139 (193)
T ss_dssp -------CTTSSSSEEEEEECCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred -------CCCCCCCEEEEECCCcCCCc----------chHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 58899999999999999632 35789999999999987 589999886
No 7
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=99.92 E-value=2.1e-25 Score=224.14 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=102.8
Q ss_pred cCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCC
Q 004319 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPS 416 (761)
Q Consensus 340 ~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~ 416 (761)
..+.+|+|++||||++. +|||||+||+.|. +||||++||+++||++|++||+++. +.|++|++++|+
T Consensus 16 ~~~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--- 85 (193)
T 1yd9_A 16 FLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA--- 85 (193)
T ss_dssp TTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE---
T ss_pred CCCCEEEEEeCccCcCc------CCEEEECCCccCC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec---
Confidence 34689999999999997 9999999999999 8999999999999999999999863 789999999999
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 417 ~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||.|+.. ...++|++||++||++| .|||||+++
T Consensus 86 ----~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is 136 (193)
T 1yd9_A 86 ----GHGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIG 136 (193)
T ss_dssp ----CTTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred ----CCCCCCCEEEEeCCCCcCCc----------chHHHHHHHHHHHHHHHHHhCCceEeecccc
Confidence 58899999999999999631 35789999999999987 589999986
No 8
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=99.92 E-value=2.2e-25 Score=221.76 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=102.2
Q ss_pred HhhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEec
Q 004319 334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP 413 (761)
Q Consensus 334 ~~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~ 413 (761)
+.+++++++.+|+|++||||++. +|||||+||+.|. ++|||++||+++||++|++||+++ +.+++|++++|+
T Consensus 13 ~~~~~~ig~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGV~~aI~~aaG~~l~~ec~~~-~~~~~G~a~iT~ 84 (183)
T 4abl_A 13 GVYEMKIGSIIFQVASGDITKEE------ADVIVNSTSNSFN-LKAGVSKAILECAGQNVERECSQQ-AQQRKNDYIITG 84 (183)
T ss_dssp TCEEEEETTEEEEEEESCGGGCB------CSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HHHSCCSEEEEE
T ss_pred CceEEEECCEEEEEEeCcccCcc------cCEEEECCCCCCC-CCccHHHHHHHHhhHHHHHHHHHh-cCCCCCceEEec
Confidence 45678899999999999999997 9999999999999 899999999999999999999987 679999999999
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||.| |++||++||++| .|||||+++
T Consensus 85 -------~~~L~~k~VIH~vgP~~------------------L~~~y~~~L~~a~~~~~~SIAfP~Is 127 (183)
T 4abl_A 85 -------GGFLRCKNIIHVIGGND------------------VKSSVSSVLQECEKKNYSSICLPAIG 127 (183)
T ss_dssp -------CTTSBSSEEEEEETTSC------------------HHHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred -------CCCCCCCEEEEeCcHHH------------------HHHHHHHHHHHHHHcCCCeEeecccc
Confidence 58899999999999954 999999999987 589999987
No 9
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=229.09 Aligned_cols=113 Identities=32% Similarity=0.350 Sum_probs=102.4
Q ss_pred CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (761)
Q Consensus 342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (761)
+.+|+|++||||++. +|||||+||..|. +||||++||+++||++|++||+++ +.|++|++++|+ +
T Consensus 61 ~~~i~i~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-g~~~~G~a~iT~-------~ 125 (235)
T 2x47_A 61 NEKISLLRSDITKLE------VDAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTL-QSCKTGKAKITG-------G 125 (235)
T ss_dssp HTTEEEEESCGGGEE------SSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHTS-CCCCBTCEEEEE-------C
T ss_pred CCEEEEEeCccCccc------CCEEEEecCcccC-CccHHHHHHHHHhCHHHHHHHHHh-CCCCCCceEEec-------C
Confidence 467999999999997 9999999999999 999999999999999999999986 789999999999 5
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
++|+|+||||+|||.|++.. .....++|++||++||++| .|||||+++
T Consensus 126 ~~L~~k~VIH~vgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~Is 178 (235)
T 2x47_A 126 YRLPAKYVIHTVGPIAYGEP-------SASQAAELRSCYLSSLDLLLEHRLRSVAFPCIS 178 (235)
T ss_dssp TTSSSSEEEEEBCCCCTTCC-------CHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCCCCCEEEEecCccccCCC-------CcchHHHHHHHHHHHHHHHHHhCCceEEecccc
Confidence 88999999999999997532 2356789999999999987 589999986
No 10
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=99.91 E-value=4e-25 Score=220.45 Aligned_cols=107 Identities=23% Similarity=0.334 Sum_probs=97.4
Q ss_pred CeEEEEEEccccc----ccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecC
Q 004319 342 PKKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL 414 (761)
Q Consensus 342 ~~~l~v~~GDIt~----~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l 414 (761)
+.+|++++||||+ +. +||||||||+.|. +||||++||+++||++|++||+++. ++|++|++++|+
T Consensus 37 ~~~i~l~~GDIt~~~~~~~------vDAIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~- 108 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVD------FDFIVNAANENLA-HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE- 108 (193)
T ss_dssp ETTEEEEECCHHHHHHHCC------CSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-
T ss_pred CCeEEEEeCcccccCcCCC------cCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec-
Confidence 4679999999999 55 9999999999999 8999999999999999999999863 789999999999
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476 (761)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~ 476 (761)
+++| +|||+|||.|+. ...++|++||++||+...|||||++|
T Consensus 109 ------~~~L---~VIHtVGP~~~~-----------~~~~~L~~~y~~~L~~~~SIAfPaIs 150 (193)
T 3ejg_A 109 ------CDSL---RIFNVVGPRKGK-----------HERDLLIKAYNTINNEQGTPLTPILS 150 (193)
T ss_dssp ------ETTE---EEEEEECCCSST-----------THHHHHHHHHHHHHHSSSCEEECCTT
T ss_pred ------CCCe---eEEEecCCCCCc-----------hHHHHHHHHHHHHHHhcCceeecccc
Confidence 3666 999999999953 25789999999999988999999997
No 11
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=99.90 E-value=5.8e-24 Score=213.88 Aligned_cols=110 Identities=28% Similarity=0.310 Sum_probs=101.4
Q ss_pred HhhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEec
Q 004319 334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP 413 (761)
Q Consensus 334 ~~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~ 413 (761)
..+++++++.+|++++||||++. +|||||+||..|. +||||++||+++||++|++||+++ +.+++|++++|+
T Consensus 24 ~~~~~~i~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-~~~~~G~a~iT~ 95 (199)
T 3kh6_A 24 TAYEMKIGAITFQVATGDIATEQ------VDVIVNSTARTFN-RKSGVSRAILEGAGQAVESECAVL-AAQPHRDFIITP 95 (199)
T ss_dssp CEEEEEETTEEEEEEESCGGGCC------SSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HTSCCCSSEEEE
T ss_pred CceEEEECCEEEEEEecccccCc------CCEEEECCCCCCC-CCchHHHHHHHHhhHHHHHHHHHh-CCCCCCeEEEec
Confidence 34677899999999999999997 9999999999999 899999999999999999999988 679999999999
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+++|+|+||||+|||. .|++||++||++| .|||||+++
T Consensus 96 -------g~~L~~k~VIH~vgp~------------------~L~~~y~~~L~~a~~~~i~SIAfP~Ig 138 (199)
T 3kh6_A 96 -------GGCLKCKIIIHVPGGK------------------DVRKTVTSVLEECEQRKYTSVSLPAIG 138 (199)
T ss_dssp -------CTTSSSSEEEEEETTS------------------CHHHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred -------CCCCCCCEEEEeCCCH------------------HHHHHHHHHHHHHHHcCCCEEeecccc
Confidence 5889999999999983 1999999999987 589999986
No 12
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=99.89 E-value=4.3e-24 Score=212.24 Aligned_cols=109 Identities=27% Similarity=0.356 Sum_probs=97.3
Q ss_pred CeEEEEEEcccccc----cccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecC
Q 004319 342 PKKFFTFVGDITRL----YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL 414 (761)
Q Consensus 342 ~~~l~v~~GDIt~~----~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~---~~~~~~G~avvT~l 414 (761)
+.+|+|++||||++ . +|||||+||+.|. +||||++||+++||++|++||+++ .+++++|++++|+
T Consensus 19 ~~~i~i~~GDIt~~~~~~~------vDAIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~- 90 (182)
T 2acf_A 19 TDNVAIKCVDIVKEAQSAN------PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS- 90 (182)
T ss_dssp SSSEEEEESCHHHHHHHHC------CSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE-
T ss_pred CCeEEEEeCcccccccCCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEee-
Confidence 36799999999999 6 9999999999999 899999999999999999999986 3889999999999
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476 (761)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~ 476 (761)
+++|+ ++|||+|||.|+... ..++|++||+++ ....|||||++|
T Consensus 91 ------~~~L~-~~VIH~vgP~~~~~~----------~~~~L~~~y~~~-~~~~SIAfP~Is 134 (182)
T 2acf_A 91 ------GHNLA-KKCLHVVGPNLNAGE----------DIQLLKAAYENF-NSQDILLAPLLS 134 (182)
T ss_dssp ------CTTTC-SEEEEECCCCGGGTC----------CTTHHHHHHHGG-GGSSEEEECCTT
T ss_pred ------CCCCC-ceEEEECCCCCCCCc----------hHHHHHHHHHHh-cCCCEEEECCcc
Confidence 46784 899999999997431 357899999998 567899999997
No 13
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=99.89 E-value=1.7e-23 Score=204.10 Aligned_cols=108 Identities=28% Similarity=0.304 Sum_probs=99.1
Q ss_pred eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 004319 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (761)
.+|++++||||++. +|||||+||..|. +||||++||++++|++|+++|+++ +++++|++++|+ ++
T Consensus 2 ~~i~i~~GDI~~~~------~daIVnaaN~~l~-~ggGv~~aI~~~~G~~l~~~c~~~-g~~~~G~a~it~-------~~ 66 (159)
T 2dx6_A 2 ARIRVVQGDITEFQ------GDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRI-GKIRVGEAAVTG-------AG 66 (159)
T ss_dssp CEEEEEESCGGGCC------SSEEEEEEETTCC-CCSTTHHHHHHHHCTHHHHHHHHH-CCCCTTCEEEEE-------CT
T ss_pred eEEEEEECcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHhc-CCCCCCcEEEec-------CC
Confidence 47899999999996 9999999999999 899999999999999999999987 789999999999 48
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+|+|++|||+|||.|+ . ...++|++||+++|++| .|||||+++
T Consensus 67 ~L~~~~Vih~vgp~~~-~----------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ig 114 (159)
T 2dx6_A 67 NLPVRYVIHAAVLGDE-P----------ASLETVRKATKSALEKAVELGLKTVAFPLLG 114 (159)
T ss_dssp TSSSSEEEEEEEESSS-C----------CCHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred CCCCCEEEEEeCCCCC-C----------chHHHHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 8999999999999996 2 13789999999999987 499999886
No 14
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=99.89 E-value=7.4e-24 Score=207.72 Aligned_cols=105 Identities=29% Similarity=0.398 Sum_probs=93.0
Q ss_pred CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (761)
Q Consensus 342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (761)
..+|+|++||||++. +|||||+||+.|. +||||++||+++||++++ .+.|++|++++|+.
T Consensus 3 ~~~i~v~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~------- 62 (168)
T 3gqe_A 3 APSYHVVRGDIATAT------EGVIINAANSKGQ-PGGGVCGALYKKFPESFD------LQPIEVGKARLVKG------- 62 (168)
T ss_dssp CCEEEEEESCGGGCC------SSEEEEEECTTSC-CTTGGGSHHHHHCGGGCC------CCCCCTTCEEEECC-------
T ss_pred CCeEEEEeCcccCcc------cCEEEeCCCcccC-CCccHHHHHHHHhhHHhc------CCCcCCCcEEEEcC-------
Confidence 468999999999997 9999999999999 899999999999999875 37899999999993
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+|+||||+|||.|+... ..++.++|++||+++|++| .|||||++|
T Consensus 63 ---~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is 112 (168)
T 3gqe_A 63 ---AAKHIIHAVGPNFNKVS-------EVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLS 112 (168)
T ss_dssp ---TTCCEEEEECCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTT
T ss_pred ---CCCEEEEcCCCccCCCC-------chhHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 36999999999997642 2345689999999999987 599999997
No 15
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=99.89 E-value=6.4e-24 Score=208.04 Aligned_cols=104 Identities=24% Similarity=0.232 Sum_probs=90.8
Q ss_pred eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 004319 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (761)
...+|++||||++. +|||||+||+.|. +||||++||+++||++++ .+.|++|++++|+.
T Consensus 10 ~~~~~~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~-------- 68 (168)
T 3gpg_A 10 PSYRVKRMDIAKND------EECVVNAANPRGL-PGDGVCKAVYKKWPESFK------NSATPVGTAKTVMC-------- 68 (168)
T ss_dssp CCC-CEESCGGGCC------SSCEEEECCTTCC-CCSHHHHHHHHHCGGGGT------TCCCCTTCEEEEEE--------
T ss_pred CceEEEeCcCCccc------CCEEEeCCCcccC-CCchHHHHHHHHhhHHhh------cCCCCCCCEEEecC--------
Confidence 45679999999997 9999999999999 899999999999999874 37899999999993
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
+|++|||+|||.|+... ..++.++|++||++||++| .|||||++|
T Consensus 69 --~~k~VIHtVGP~~~~~~-------~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~Is 118 (168)
T 3gpg_A 69 --GTYPVIHAVGPNFSNYS-------ESEGDRELAAAYREVAKEVTRLGVNSVAIPLLS 118 (168)
T ss_dssp --TTEEEEEECCCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred --CCCEEEEeCCCCcCCCC-------cchHHHHHHHHHHHHHHHHHHhCCcEEEECccc
Confidence 36999999999997642 2345689999999999987 599999997
No 16
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=99.89 E-value=2e-23 Score=212.40 Aligned_cols=117 Identities=28% Similarity=0.274 Sum_probs=105.2
Q ss_pred hhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhc----HHHHHHHHHh---cCC--CC
Q 004319 335 AAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG----PALEVATAER---AKS--LY 405 (761)
Q Consensus 335 ~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG----~~l~~e~~~~---~~~--~~ 405 (761)
..+.++++.+|+|++||||++. +|||||+||+.|. +||||++||+++|| ++|+++|+++ .++ ++
T Consensus 13 ~~~~~~~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~ 85 (211)
T 1vhu_A 13 LFEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYID 85 (211)
T ss_dssp EEEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCC
T ss_pred hhheeECCEEEEEEecccCcCC------CCEEEECCCcccc-CccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCccc
Confidence 4556889999999999999996 9999999999999 89999999999999 9999999985 266 99
Q ss_pred CCCEEEecCCCCCCCCCCCCc---cEEEEecCC----CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhcc
Q 004319 406 PGNSVIVPLPSTSPLCGREGV---THVIHVLGP----NMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRS 473 (761)
Q Consensus 406 ~G~avvT~l~~~~~~~~~l~~---k~VIH~VGP----~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~ 473 (761)
+|++++|+ +++|++ +||||+||| .|++ ...++|++||++||++| .|||||
T Consensus 86 ~G~a~iT~-------~~~L~~~g~k~VIH~vgP~~~~~~~~-----------~~~~~L~~~y~~~L~~A~~~~i~SIAfP 147 (211)
T 1vhu_A 86 HGEVVVTP-------AMNLEERGIKYVFHTVGPICSGMWSE-----------ELKEKLYKAFLGPLEKAEEMGVESIAFP 147 (211)
T ss_dssp TTCCEEEE-------CGGGGGGTCCEEEEEECCCCTTCCCH-----------HHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCcEEEEE-------CCCCCccCcCEEEEecCCccccccCc-----------chHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 99999999 478888 999999999 8832 35789999999999987 589999
Q ss_pred ccc
Q 004319 474 QEK 476 (761)
Q Consensus 474 ~~~ 476 (761)
+++
T Consensus 148 ~Is 150 (211)
T 1vhu_A 148 AVS 150 (211)
T ss_dssp CTT
T ss_pred ccc
Confidence 886
No 17
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=99.89 E-value=1.6e-23 Score=207.00 Aligned_cols=111 Identities=25% Similarity=0.290 Sum_probs=96.6
Q ss_pred CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 004319 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS 418 (761)
Q Consensus 342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~---~~~~~~G~avvT~l~~~~ 418 (761)
+.+|++++||||++.. +.++|||||+||+.|. +||||++||+++||++|++||+++ .+.+++|++++|+.
T Consensus 16 ~~~i~i~~GDIt~~~~--~~~~DaIVNaaN~~l~-~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~---- 88 (174)
T 2vri_A 16 YKNVKFYLGDISHLVN--CVSFDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLEC---- 88 (174)
T ss_dssp ETTEEEEESCHHHHTT--TSCCSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEEC----
T ss_pred CCeEEEEecccccccc--CCCccEEEECCCccCC-CCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEEC----
Confidence 3579999999999821 1129999999999999 999999999999999999999986 37899999999992
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476 (761)
Q Consensus 419 ~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~ 476 (761)
++| +|||+|||.|.. . ..++|++||+++|+...|||||+++
T Consensus 89 ---~~l---~VIH~vgP~~~~----------~-~~~~L~~~y~~~L~~~~SIAfP~Is 129 (174)
T 2vri_A 89 ---EKF---NVFNVVGPRTGK----------H-EHSLLVEAYNSILFENGIPLMPLLS 129 (174)
T ss_dssp ---SSC---EEEEEECCCSST----------T-HHHHHHHHHHHHHHSSSCEEEECSS
T ss_pred ---CCC---EEEEEcCCCCCc----------c-hHHHHHHHHHHHHhhCCcEEeCccc
Confidence 444 999999999942 1 5789999999999988899999997
No 18
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=99.88 E-value=1.2e-23 Score=207.34 Aligned_cols=117 Identities=23% Similarity=0.244 Sum_probs=98.5
Q ss_pred ccCCeEEEEEEcccccccccC--CccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 004319 339 HINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP 413 (761)
Q Consensus 339 ~~~~~~l~v~~GDIt~~~~~g--~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~ 413 (761)
.-++.+|++++||||++..+. +.++||||||||+.|. ++|||++||+++||++|++||+++. |+++ +++|+
T Consensus 10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~ 85 (176)
T 3ejf_A 10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTP 85 (176)
T ss_dssp CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCC-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEEC
T ss_pred CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecc
Confidence 345789999999999996211 1125679999999999 8999999999999999999999874 6676 88998
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHhhccccc
Q 004319 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG-FLSIVRSQEK 476 (761)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~-a~siaf~~~~ 476 (761)
++.+.+++|||+|||.|... ...++|++||+++|+. ..|||||++|
T Consensus 86 -------G~~l~t~~VIHtVGP~~~~~----------~~~~~L~~~y~~~L~~~~~SIAfPaIs 132 (176)
T 3ejf_A 86 -------SFVKGIQCVNNVVGPRHGDN----------NLHEKLVAAYKNVLVDGVVNYVVPVLS 132 (176)
T ss_dssp -------CCSTTEEEEEEECCCCTTCS----------CHHHHHHHHHHTTCCTTCCEEEEECCC
T ss_pred -------cccccCCEEEEeCCCCCCCc----------cHHHHHHHHHHHHHHcCCcEEEECccc
Confidence 57889999999999999532 2578999999999984 6899999997
No 19
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.86 E-value=3.1e-22 Score=211.07 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=110.7
Q ss_pred CeEEEEecccccchhhHHHHHHhhhc--ccCCeEEEEEEccccccc---ccCCc----cccEEEeCCCCCCcCCCChhhH
Q 004319 313 NARLVLVDLTQGSKILSLVRAKAAQK--HINPKKFFTFVGDITRLY---TGGGL----CCNVIANAANWRLKPGGGGVNA 383 (761)
Q Consensus 313 ~i~~v~vD~~~~s~~ls~v~~~~~~~--~~~~~~l~v~~GDIt~~~---~~g~~----~~daIVNaaN~~L~~~~gGV~~ 383 (761)
.++++++|.++.. ...+. ..... ..++.+|+|++||||++. .+|++ .+||||||||+.|. +||||++
T Consensus 16 ~m~i~l~d~~~~~--v~a~~-~~~~~~~~~~~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~-~gGGVd~ 91 (284)
T 1njr_A 16 KMRIILCDTNEVV--TNLWQ-ESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDK 91 (284)
T ss_dssp CCEEEEEESCHHH--HHHHH-HHCC-------CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHH
T ss_pred cceEEEECCCHHH--HHHHH-HHhhhhcCCCCCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCC-CCchHHH
Confidence 4678888777633 11111 11111 113568999999999991 12333 39999999999999 9999999
Q ss_pred HHHHhhc-HHHHHHHHHh--cCCCCCCCEEEecCCCC---CCCCCCCCccEEEEecCCCCCCCC-CCCCCCCchhhHHHH
Q 004319 384 AIFSAAG-PALEVATAER--AKSLYPGNSVIVPLPST---SPLCGREGVTHVIHVLGPNMNPRR-PNCLDGDYVKGCEIL 456 (761)
Q Consensus 384 AI~~aAG-~~l~~e~~~~--~~~~~~G~avvT~l~~~---~~~~~~l~~k~VIH~VGP~~~~~~-~~~l~~~~~~~~~~L 456 (761)
||+++|| +.|+++|+++ .+.+++|++++|+.... +-.+.+|+|+||||+|||.|.... .+. .+.+....++|
T Consensus 92 AI~raaGg~~l~~ec~~~~~~g~~~~G~a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~-~~p~~~~~~~L 170 (284)
T 1njr_A 92 ALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP-QNPLKTGFEPV 170 (284)
T ss_dssp HHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT-TCHHHHTHHHH
T ss_pred HHHHhhCcHHHHHHHHHHHhcCCCCCCeEEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCccc-ccccccHHHHH
Confidence 9999975 7889999986 37799999999993100 000028999999999999996531 100 00001346899
Q ss_pred HHHHHHHHHHH----HHhhccccc
Q 004319 457 RKAYTSLFEGF----LSIVRSQEK 476 (761)
Q Consensus 457 ~~ay~~~L~~a----~siaf~~~~ 476 (761)
++||++||+.| .|||||+++
T Consensus 171 ~~~~~~~L~~ae~~i~SIAfPaIs 194 (284)
T 1njr_A 171 FNAMWNALMHSPKDIDGLIIPGLC 194 (284)
T ss_dssp HHHHHHHHHTSCTTCSEEEECCTT
T ss_pred HHHHHHHHHHHHhCCCEEEECccc
Confidence 99999999975 799999886
No 20
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.85 E-value=5.4e-22 Score=219.21 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=91.9
Q ss_pred eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 004319 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (761)
..+.|++||||+.. +||||||||..|. +||||++||+++||+++.+ +.+++|+|++|+..
T Consensus 344 PsfrIIRgDITk~~------vDAIVNAANtsL~-gGgGVdGAIhraaG~~ll~------~~~~tG~AkIT~g~------- 403 (670)
T 4gua_A 344 PSYRTKRENIADCQ------EEAVVNAANPLGR-PGEGVCRAIYKRWPTSFTD------SATETGTARMTVCL------- 403 (670)
T ss_dssp CCEEEECSCGGGCC------SSEEEEECCTTCC-CCSSHHHHHHHHCGGGGTT------CCCCTTCEEEEEET-------
T ss_pred cceeEEeccccccc------cCEEEeCCCCCCC-CcCCHhHHHHHHhhHHHhc------CCCCcceEEEecCC-------
Confidence 46999999999997 9999999999999 8999999999999998875 57899999999932
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK 476 (761)
Q Consensus 423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~ 476 (761)
.+||||||||+|++.. ..+..++|++||+++|++| .|||||+||
T Consensus 404 ---aKyIIHtVGPvw~~g~-------~~E~~~lLascYrnsLkLA~e~~~kSIAFPLIS 452 (670)
T 4gua_A 404 ---GKKVIHAVGPDFRKHP-------EAEALKLLQNAYHAVADLVNEHNIKSVAIPLLS 452 (670)
T ss_dssp ---TEEEEEECCCCTTSSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred ---CceEEEcCCCCccCCC-------CchHHHHHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 2999999999998753 2344579999999999997 589999997
No 21
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=99.83 E-value=1.2e-20 Score=198.32 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=114.7
Q ss_pred cchhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHH
Q 004319 557 WGSWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAV 628 (761)
Q Consensus 557 ~~~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~ 628 (761)
.-.|..++..-.+.++ .+||+|++ ||+|.|++ |.+..|+|+||++++|.|++||+++|+++|++|...
T Consensus 136 ~l~Wv~nIl~~~~E~e----~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~ 211 (301)
T 3bl9_A 136 SIQWVYNILDKKAEAD----RIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQ 211 (301)
T ss_dssp CCHHHHHHHTTSSSGG----GCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHH
T ss_pred chhHHHHHhhCCCccc----cEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHH
Confidence 4579776655545555 49999988 99999988 889999999999767999999999999999999999
Q ss_pred HHHHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCC
Q 004319 629 GMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGK 701 (761)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~ 701 (761)
+.+++.+... .....+++|||+.|||.|||||||+.+|.+++++.+| .||+ ++||++|+.+|.
T Consensus 212 ~~~~i~~~y~-~~~~~~rlgfHy~PS~yHLHlHvis~~~~s~~~~~~k-------A~lL--ddVI~~Le~~g~ 274 (301)
T 3bl9_A 212 GQEAILQRYR-MKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVER-------AHLL--AEVIENLECDPR 274 (301)
T ss_dssp HHHHHHHHHC-CCGGGEEEEEESSCSSSSCEEEEEETTSCCTTCBTTT-------EEEH--HHHHHHHHHCTT
T ss_pred HHHHHHHhcC-CChHHeEEEecCCCCcceEEEEEEecCCCCCccccce-------eeeH--HHHHHHHHhCCc
Confidence 9999987643 2345799999999999999999999999999999998 7777 999999999885
No 22
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=99.82 E-value=2.3e-20 Score=198.35 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=112.7
Q ss_pred cchhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHH
Q 004319 557 WGSWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAV 628 (761)
Q Consensus 557 ~~~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~ 628 (761)
.-.|..++..-...++. +||+|++ ||+|.|++ |.+..|+|+||++++|.|++||+++|+++|++|...
T Consensus 183 ~l~Wv~nIl~~~~E~e~----vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~ 258 (350)
T 1vlr_A 183 SIQWVYNILDKKAEADR----IVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILRE 258 (350)
T ss_dssp CCHHHHHHHTC----CC----CSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHH
T ss_pred chhHHHHHhhCCCcccc----EEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHH
Confidence 45697766655555554 9999988 99999988 889999999999767999999999999999999999
Q ss_pred HHHHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCC
Q 004319 629 GMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGK 701 (761)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~ 701 (761)
+.+++.+... .....+++|||+.|||.|||||||+.+|.+++++.+| .||+ ++||++|+..|.
T Consensus 259 ~~~ii~~~yg-~~~~~lRlgfHy~PS~yHLHlHvis~~~~s~~l~~~K-------A~lL--ddVI~nLe~~g~ 321 (350)
T 1vlr_A 259 GQEAILKRYQ-VTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVER-------AHLL--AQVIENLECDPK 321 (350)
T ss_dssp HHHHHHHHHC-CCGGGEEEEEESSCSSSSCEEEEEETTSCCTTCBTTT-------EEEH--HHHHHHHHHCTT
T ss_pred HHHHHHHhcC-CChHHeEEEecCCCCcceEEEEEEeccCCCCccccCe-------eeeH--HHHHHHHHhCCC
Confidence 9999987643 2345799999999999999999999999999999998 7777 999999998875
No 23
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.74 E-value=5.8e-18 Score=157.16 Aligned_cols=95 Identities=26% Similarity=0.355 Sum_probs=81.5
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hcc-CCceeeeecccC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHE-DASLAFRLGYHS 651 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~~-~~~~~~~~G~ha 651 (761)
.|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|+..+++++++. +.. +++..++.|..+
T Consensus 15 ~~~~iv~ede~~~af~d~~P~~pgH~LViPk-~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ni~~n~g~~a 93 (119)
T 3n1s_A 15 IPSDIVYQDDLVTAFRDISPQAPTHILIIPN-ILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHG 93 (119)
T ss_dssp SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCEEEEEEEHHHH
T ss_pred CcCCEEEECCCEEEEECCCCCCCCeEEEEeh-hHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCCc
Confidence 4678999999999999999999999999999 8999999999999999999999999988763 333 334456677778
Q ss_pred CCcccceeeeeecCCccc
Q 004319 652 APSMRQLHLHVISQDFNS 669 (761)
Q Consensus 652 ~pSv~HLHlHVIs~d~~s 669 (761)
+++|+|||+|||++.--.
T Consensus 94 gq~V~HlH~Hiipr~~~~ 111 (119)
T 3n1s_A 94 GQEVYHIHMHLLGGRPLG 111 (119)
T ss_dssp TCCSSSCCEEEEESSCCC
T ss_pred CCCcCEEEEEEeCCcccC
Confidence 999999999999875443
No 24
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.73 E-value=1.2e-17 Score=154.80 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=84.1
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hc-cCCceeeeecccC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LH-EDASLAFRLGYHS 651 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~-~~~~~~~~~G~ha 651 (761)
.|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|...+.++++.. .. .+++..++.|..+
T Consensus 16 ~~~~iv~e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ni~~n~g~~a 94 (119)
T 4egu_A 16 IPSTKVYEDDRVLAFNDLNPVAPYHILVVPK-KHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDG 94 (119)
T ss_dssp SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCEEEEEEETTTT
T ss_pred CCCCEEEECCCEEEEECCCCCCCceEEEEec-hhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCC
Confidence 4678999999999999999999999999999 8999999999999999999999888887764 22 2445567777778
Q ss_pred CCcccceeeeeecCCccccccc
Q 004319 652 APSMRQLHLHVISQDFNSKHLK 673 (761)
Q Consensus 652 ~pSv~HLHlHVIs~d~~s~~lk 673 (761)
+++|+|||+|||++.-.+++.|
T Consensus 95 gq~v~HlH~Hiip~~~~~~~~~ 116 (119)
T 4egu_A 95 GQEVKHLHYHILAGKKLPNYEA 116 (119)
T ss_dssp TCCSCSCCEEEEESSCCCCGGG
T ss_pred CCCcCEEEEEEeCCcccCccCc
Confidence 8899999999999876655544
No 25
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.71 E-value=1.5e-17 Score=155.96 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=83.5
Q ss_pred HHHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-C
Q 004319 563 ALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-A 641 (761)
Q Consensus 563 ~L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~ 641 (761)
-+.+++.. ..|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|++++..+|.+|+..+++++++....+ +
T Consensus 18 iFC~i~~~--e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~ 94 (126)
T 3o1c_A 18 IFGKIIRK--EIPAKIIFEDDQALAFHDISPQAPTHFLVIPK-KHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGY 94 (126)
T ss_dssp HHHHHHHT--SSCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCE
T ss_pred CcchhhcC--CCcCCEEEECCCEEEEECCCCCCCceEEEEec-hHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 34455543 24678999999999999999999999999999 89999999999999999999999999888765433 3
Q ss_pred ceeeeecccCCCcccceeeeeecC
Q 004319 642 SLAFRLGYHSAPSMRQLHLHVISQ 665 (761)
Q Consensus 642 ~~~~~~G~ha~pSv~HLHlHVIs~ 665 (761)
+..+|.|..++|+|+|||+|||++
T Consensus 95 ni~~n~g~~agq~v~HlH~Hiipr 118 (126)
T 3o1c_A 95 RMVVNEGSDGGQSVYHVHLHVLGG 118 (126)
T ss_dssp EEECCCHHHHTCCSSSCCEEEEES
T ss_pred EEEEecCCccCCccCEeEEEEeCC
Confidence 444666666788999999999986
No 26
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.69 E-value=1e-16 Score=179.21 Aligned_cols=143 Identities=24% Similarity=0.341 Sum_probs=127.0
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD 95 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~ 95 (761)
..+.|.+|+|+|+|||||||+|++|++.++ +.+|+.|.+ ..+..+...+.+.+..|..||+|++|....+|..
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~-----~~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~ 326 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR 326 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGS-----CSHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--cEEEccchH-----HHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 455788999999999999999999999988 888999998 3566677888899999999999999999999999
Q ss_pred HHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCCh
Q 004319 96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (761)
Q Consensus 96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~ 166 (761)
++++ +..++.+.+|+|++|.++|.+|+.+|..+.. ....++++++.++.+.+++|...|+|+.|+.++-.
T Consensus 327 ~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~~ 397 (416)
T 3zvl_A 327 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDP-SHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFR 397 (416)
T ss_dssp HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCT-TCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECCC
T ss_pred HHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEecc
Confidence 9999 8888889999999999999999999987432 23467899999999999999999999999998753
No 27
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.69 E-value=5.1e-17 Score=150.14 Aligned_cols=91 Identities=16% Similarity=0.317 Sum_probs=77.0
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP 653 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p 653 (761)
.|..+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|...+++++++.+..+++..++.|-.+++
T Consensus 19 ~~~~iv~e~~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~g~ni~~n~g~~agq 97 (117)
T 3oj7_A 19 IPSTIVYEDDEIFAFKDINPIAPIHILVIPK-QHIASLNEITEENEAFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQ 97 (117)
T ss_dssp SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTTTC
T ss_pred CCCCEEEECCcEEEEECCCCCCCceEEEEec-hHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCCCCCe
Confidence 4678999999999999999999999999999 899999999999999999999988888776333333334455555777
Q ss_pred cccceeeeeecC
Q 004319 654 SMRQLHLHVISQ 665 (761)
Q Consensus 654 Sv~HLHlHVIs~ 665 (761)
+|+|+|+|||++
T Consensus 98 ~v~H~H~Hiipr 109 (117)
T 3oj7_A 98 TVKHIHFHILGG 109 (117)
T ss_dssp CSSSCCEEEEES
T ss_pred eeeEEEEEEeCC
Confidence 999999999986
No 28
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.66 E-value=1.4e-16 Score=155.21 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=89.6
Q ss_pred CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 004319 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (761)
Q Consensus 341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~ 420 (761)
++..|++++||||+.. .+|+|||+||..+. +||||++||++++|. + .+|++ +.+++|++++|+.+
T Consensus 18 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~GgGVa~ai~~~~p~-~-~e~~~--~~~~~G~a~it~~~----- 82 (160)
T 2jyc_A 18 EGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFGG-V-QELLN--QQKKSGEVAVLKRD----- 82 (160)
T ss_dssp CSCSEEEEESCSSSSC-----SSCEEEEEECTTCC-CCSSTHHHHHHHHCC-H-HHHHH--HCCCTTCEEEEEET-----
T ss_pred CCceEEEEeCcCCCCC-----CCCEEEEccCCcCC-CCCcHHHHHHHHChH-H-HHHhc--cCCCCCcEEEEecC-----
Confidence 4678999999999974 25999999999999 999999999999955 4 57776 57999999999932
Q ss_pred CCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319 421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK 476 (761)
Q Consensus 421 ~~~l~~k~VIH~VGP~-~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~ 476 (761)
.++|||+|||. |.+ .+ ..+.|++||+++|+.|. |||||.++
T Consensus 83 -----~~~Vih~vg~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~Ig 129 (160)
T 2jyc_A 83 -----GRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIG 129 (160)
T ss_dssp -----TEEEEEEECSSSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEEEESCC
T ss_pred -----CcEEEEEecCCCCCC-CC---------hHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 39999999998 644 22 37899999999999874 99999875
No 29
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.65 E-value=1.5e-16 Score=153.44 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=88.9
Q ss_pred CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 004319 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (761)
Q Consensus 341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~ 420 (761)
++.+|++++||||+.. .+|+|||++|..+. +||||++||++++| ++ .+|.+ +.+++|++++|+.
T Consensus 7 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~G~Gva~ai~~~~p-~~-~~~~~--~~~~~G~a~it~~------ 70 (149)
T 2eee_A 7 GGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFG-GV-QELLN--QQKKSGEVAVLKR------ 70 (149)
T ss_dssp SSCCCEEECSCSSSSC-----SSCEEEEEEETTCC-CCSTTHHHHHHHTC-CH-HHHHT--TCCCTTCEEEEES------
T ss_pred CCeeEEEEecccccCC-----CCcEEEEEeCCCCC-cCCcHHHHHHHHCc-HH-HHHhc--ccCCCccEEEEEc------
Confidence 4678999999999974 26999999999999 99999999999995 45 57765 6799999999993
Q ss_pred CCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319 421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK 476 (761)
Q Consensus 421 ~~~l~~k~VIH~VGP~-~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~ 476 (761)
+.++|||++||. |.. .+ ..+.|++||+++|+.|. |||||.++
T Consensus 71 ----~~~~Vih~v~~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~Ig 118 (149)
T 2eee_A 71 ----DGRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIG 118 (149)
T ss_dssp ----SSSEEEEEEEESSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEECCCCC
T ss_pred ----CCCEEEEEEecCCCCC-CC---------CHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 249999999998 654 22 36899999999999864 89999775
No 30
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.63 E-value=6.9e-16 Score=148.42 Aligned_cols=99 Identities=19% Similarity=0.349 Sum_probs=80.9
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhc-c-CC
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLH-E-DA 641 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~-~-~~ 641 (761)
+.+++.. ..|..+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|..+++++++.... . ++
T Consensus 39 FC~ii~~--e~~~~iV~e~e~~~af~d~~P~~pgH~LViPk-rHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~gy 115 (147)
T 1xqu_A 39 FCKIIKR--ELPSTIYYEDERVIAIKDINPAAPVHVLIIPK-EHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY 115 (147)
T ss_dssp HHHHHTT--SSCBCEEEECSSEEEEECSSCSSSEEEEEEES-SCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred ccccccC--CCCcEEEEECCcEEEEEecCCCCccEEEEEeC-cccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 4455543 34678999999999999999999999999999 899999999999988999999999988877642 2 23
Q ss_pred ceeeeecccCCCcccceeeeeecC
Q 004319 642 SLAFRLGYHSAPSMRQLHLHVISQ 665 (761)
Q Consensus 642 ~~~~~~G~ha~pSv~HLHlHVIs~ 665 (761)
+..++.|..++++|+|||+|||++
T Consensus 116 ni~~n~g~~aGq~v~HlHlHiiP~ 139 (147)
T 1xqu_A 116 RLITNCGVAAGQTVFHLHYHLLGG 139 (147)
T ss_dssp EEECCCSTTTTCCSCSCCEEEEES
T ss_pred EEEEecCcccCCCccEEEEEEeCC
Confidence 334455555677999999999986
No 31
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.62 E-value=9.8e-16 Score=149.17 Aligned_cols=129 Identities=22% Similarity=0.291 Sum_probs=102.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHH-HcCCCeEEEecccccC---CC-------CCcH-H-----HHHHHHHHHH---HCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMR-SSARPWARICQDTINK---GK-------SGTK-V-----QCLTSASSAL---KKG 78 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~-~~~~~~~~I~~D~i~~---~~-------~~~~-~-----~~~~~~~~~L---~~g 78 (761)
+|.+|+|+|+|||||||+|+.|++ .++ +.+++.|.++. +. +... . .+...+...+ ..|
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 468999999999999999999998 566 88899888742 11 1111 1 1225566777 789
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 004319 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE 155 (761)
Q Consensus 79 ~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~E 155 (761)
..||+|+++....+|..|.++ ...++.+.+|+|++|.++|.+|+.+|..+ ..+++.+.++++.++.|...+
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~ 150 (181)
T 1ly1_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLP 150 (181)
T ss_dssp CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC------CCCHHHHHHHHHHhhccCCCC
Confidence 999999999999999999887 66777788999999999999999999864 467899999999998775444
No 32
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.61 E-value=2.8e-15 Score=144.45 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=76.3
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hccCC-
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHEDA- 641 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~~~~- 641 (761)
+.+++.. ..|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++. +..++
T Consensus 9 FC~i~~~--e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk-~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 85 (149)
T 3o0m_A 9 FCAIVSG--DAPAIRIYEDENFLGILDIRPFTRGHTLVIPK-THTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGN 85 (149)
T ss_dssp HHHHHTT--SSCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEE
T ss_pred cCccccC--CCCCCEEEECCCEEEEEcCCCCCCCeEEEEec-hhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 3344443 24678999999999999999999999999999 7999999999998777777666666655554 44433
Q ss_pred ceeeeecccCCCcccceeeeeecC
Q 004319 642 SLAFRLGYHSAPSMRQLHLHVISQ 665 (761)
Q Consensus 642 ~~~~~~G~ha~pSv~HLHlHVIs~ 665 (761)
+..++.|-.++++|+|||+|||.+
T Consensus 86 ni~~n~g~~aGq~v~HlHiHiiPR 109 (149)
T 3o0m_A 86 NIAINDGKAAFQTVFHIHLHVVPR 109 (149)
T ss_dssp EEECCCSGGGTCCSSSCCEEEEEE
T ss_pred EEEEecCCCCCCccceEEEEEECC
Confidence 223444445778999999999996
No 33
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.61 E-value=8.3e-16 Score=149.62 Aligned_cols=116 Identities=15% Similarity=0.037 Sum_probs=90.6
Q ss_pred eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCCC
Q 004319 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTSP 419 (761)
Q Consensus 343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~---~~~~~~G~avvT~l~~~~~ 419 (761)
+.|++++||||+... .++|+|||++|..+. +||||++||++++ |++++++++. .+.+++|++++|+.
T Consensus 4 M~i~~v~GDit~~~~---~~~daIvn~~N~~~~-~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~----- 73 (158)
T 2fg1_A 4 MEILYIKGDATAPIG---SGVKVITHICNDIGG-WGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNV----- 73 (158)
T ss_dssp CCCEEEESCTTSCCS---SSCEEEEEEEETTCC-CCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEE-----
T ss_pred eEEEEEecccCCCCC---CCCeEEEEEecCCCC-cCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEec-----
Confidence 478899999999310 127999999999999 9999999999999 6777776653 25899999999983
Q ss_pred CCCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH----Hhhccccc
Q 004319 420 LCGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL----SIVRSQEK 476 (761)
Q Consensus 420 ~~~~l~~k~VIH~VGP~-~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~----siaf~~~~ 476 (761)
.+ .++|||++||. |...+.. ......+.|++||+++++.|. |||||.++
T Consensus 74 -~~---~~~Vi~~v~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig 127 (158)
T 2fg1_A 74 -EN---KLYVANMIGQHGIYKDSKG----LPPIRYDAVRQCLKEVALFTIAHKASVHMPRIG 127 (158)
T ss_dssp -ET---TEEEEEEEEESSSSCCTTC----CCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTT
T ss_pred -CC---CeEEEEEEEEcccCCCCCC----CccccHHHHHHHHHHHHHHHHHhCCeEEecCcC
Confidence 11 29999999998 7543210 011247899999999999875 89999775
No 34
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.58 E-value=2.4e-15 Score=153.41 Aligned_cols=113 Identities=16% Similarity=0.308 Sum_probs=86.1
Q ss_pred CCCCCcchhHHHHHhhhcC--------CC-----------CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChh
Q 004319 552 STSKAWGSWAQALYRTAMY--------PE-----------RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA 612 (761)
Q Consensus 552 ~~~~~~~~w~~~L~~~~~~--------Pe-----------~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~ 612 (761)
.+..-|++||..+...-.. ++ ..|+.+||+|+.++||.|+||.+++|+||||| +|+.++.
T Consensus 41 ~m~~l~~p~r~~y~~~~~~~~~~~~~~~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPk-rHv~~l~ 119 (218)
T 3ano_A 41 QLQRLWTPYRMNYLAEAPVKRDPNSSASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPY-RRVSELE 119 (218)
T ss_dssp SCCCCCCCCC-------------------CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEES-SCCCCGG
T ss_pred hhhhcccchHHHHhcCCCcccccccCCCCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEec-hhhCChh
Confidence 3556899999875421111 01 13457999999999999999999999999999 8999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCCcc-cceeeeeecC
Q 004319 613 DVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAPSM-RQLHLHVISQ 665 (761)
Q Consensus 613 dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~pSv-~HLHlHVIs~ 665 (761)
+|++++...|..+...+.+.+++.+..++ +..++.|..++++| +|||+|||++
T Consensus 120 dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR 174 (218)
T 3ano_A 120 DLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPR 174 (218)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcc
Confidence 99999999999999999988888765543 23345555567899 9999999986
No 35
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.57 E-value=5.5e-15 Score=141.92 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=73.2
Q ss_pred CCC-CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeeccc
Q 004319 573 RHK-DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYH 650 (761)
Q Consensus 573 ~~p-~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~h 650 (761)
.+| +.+|||||.+++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++.+..++ +..++.|-.
T Consensus 9 ~ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk-~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~ 87 (147)
T 1fit_A 9 LIKPSVVFLKTELSFALVNRKPVVPGHVLVCPL-RPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPE 87 (147)
T ss_dssp EECGGGEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGG
T ss_pred ccCCcEEEEECCCEEEEECCCCCCCcEEEEEEc-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence 344 56999999999999999999999999999 799999999999977777666666666555544432 233444555
Q ss_pred CCCcccceeeeeecC
Q 004319 651 SAPSMRQLHLHVISQ 665 (761)
Q Consensus 651 a~pSv~HLHlHVIs~ 665 (761)
++++|+|||+|||++
T Consensus 88 agq~v~HlH~HiiPr 102 (147)
T 1fit_A 88 AGQTVKHVHVHVLPR 102 (147)
T ss_dssp GTCCSSSCCEEEEEE
T ss_pred cCCCccEEEEEEECC
Confidence 678999999999986
No 36
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.57 E-value=6.9e-15 Score=141.34 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=79.3
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-Cc
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-AS 642 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~ 642 (761)
+.+++.. ..|+.+|||||.+++|.|.+|.+++|+||||| +|+.++.+|+++++..|..+.....+.+++.+..+ .+
T Consensus 13 fC~i~~~--e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 89 (147)
T 3imi_A 13 FCKIIDG--QILCSKVYEDEHVLAFLDISQVTKGHTLVIPK-VHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFN 89 (147)
T ss_dssp HHHHHTT--SSCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEE
T ss_pred CcccccC--CCcCCEEEECCCEEEEEcCCCCCCcEEEEEEe-eccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 3445443 34678999999999999999999999999999 89999999999987776666655555555554443 34
Q ss_pred eeeeecccCCCcccceeeeeecCCc
Q 004319 643 LAFRLGYHSAPSMRQLHLHVISQDF 667 (761)
Q Consensus 643 ~~~~~G~ha~pSv~HLHlHVIs~d~ 667 (761)
..++.|..++++|+|+|+|||++--
T Consensus 90 i~~n~g~~aGq~v~HlHiHiiPR~~ 114 (147)
T 3imi_A 90 LLNNNGEKAGQTVFHFHLHLIPRYG 114 (147)
T ss_dssp EEEEESGGGTCCSSSCCEEEEEECS
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcc
Confidence 4567777888899999999999743
No 37
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.56 E-value=7.4e-15 Score=141.55 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=71.0
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSA 652 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~ 652 (761)
.|+.+|||||.++||.|++|.++||+||||| +|+.++.+|+++++..|..+.+...+.+++...+++ +..++.|..++
T Consensus 23 ip~~iV~ed~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aG 101 (149)
T 3ksv_A 23 IPCAKVAETSKALAFMDINPLSRGHMLVIPK-EHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAH 101 (149)
T ss_dssp SCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTT
T ss_pred CCccEEEECCCEEEEECCCCCCCCEEEEEeC-hhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccC
Confidence 4678999999999999999999999999999 799999999998866655555544444444333332 33445555667
Q ss_pred CcccceeeeeecC
Q 004319 653 PSMRQLHLHVISQ 665 (761)
Q Consensus 653 pSv~HLHlHVIs~ 665 (761)
++|+|+|+|||++
T Consensus 102 q~v~HlHiHiiPR 114 (149)
T 3ksv_A 102 QEVPHVHFHIIPK 114 (149)
T ss_dssp CCSSSCCEEEEEE
T ss_pred CCCCEEEEEEEec
Confidence 7999999999986
No 38
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.56 E-value=9.2e-15 Score=138.87 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=75.0
Q ss_pred HHHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 004319 563 ALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDAS 642 (761)
Q Consensus 563 ~L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~ 642 (761)
-+.+++.. ..|+.+|||||.+++|.|++|.++||+||||| +|+.++.+|+++++..|..+.....+.+++.+..++
T Consensus 8 iFC~i~~~--e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~- 83 (138)
T 3p0t_A 8 IFTKIINR--ELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTER- 83 (138)
T ss_dssp HHHHHHTT--SSCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE-
T ss_pred hhhHHhcC--CCCcCEEEeCCCEEEEecCCCCCCcEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 34455553 35678999999999999999999999999999 799999999998877776666655555555544432
Q ss_pred eeeeecccCCCcccceeeeeecC
Q 004319 643 LAFRLGYHSAPSMRQLHLHVISQ 665 (761)
Q Consensus 643 ~~~~~G~ha~pSv~HLHlHVIs~ 665 (761)
+++. .++++|+|||+|||++
T Consensus 84 --~n~~-~~gq~v~HlH~HiiPr 103 (138)
T 3p0t_A 84 --SGLI-IAGLEVPHLHVHVFPT 103 (138)
T ss_dssp --EEEE-ECCSSCSSCCEEEEEE
T ss_pred --CcEE-ECCcccCEEEEEEecc
Confidence 3332 4788999999999987
No 39
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.56 E-value=1.1e-14 Score=140.00 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeccc---
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYH--- 650 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~h--- 650 (761)
.|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+.+.+..++ +++++|
T Consensus 11 ~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk-~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~---~ni~~n~g~ 86 (149)
T 2eo4_A 11 LEGYFVYEDEKFAAILDKYPVSLGHTLVIPK-KHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADG---LRLLTNIGR 86 (149)
T ss_dssp SCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE---EEEECCCSG
T ss_pred CCccEEEECCCEEEEECCCCCCCCeEEEEec-hhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCC---eEEEEecCc
Confidence 4678999999999999999999999999999 799999999999988777777666666665554433 555554
Q ss_pred -CCCcccceeeeeecC
Q 004319 651 -SAPSMRQLHLHVISQ 665 (761)
Q Consensus 651 -a~pSv~HLHlHVIs~ 665 (761)
++++|+|||+|||++
T Consensus 87 ~~gq~v~HlHiHviPr 102 (149)
T 2eo4_A 87 SAGQVIFHLHVHIIPT 102 (149)
T ss_dssp GGTCCSCSCCEEEEEE
T ss_pred CCCCCcCEEEEEEECC
Confidence 567999999999975
No 40
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.56 E-value=1.5e-14 Score=141.25 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=78.9
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-c
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-S 642 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~ 642 (761)
+.+++.. ..|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++.+..++ +
T Consensus 32 FC~i~~~--e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~n 108 (161)
T 3lb5_A 32 FAKLIRN--EIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPK-KGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGIT 108 (161)
T ss_dssp HHHHHTT--SSCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred ccccccC--CCCccEEEECCCEEEEECCCcCCCcEEEEEEe-eccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 4555553 35678999999999999999999999999999 799999999999877776666655555555544433 3
Q ss_pred eeeeecccCCCcccceeeeeecC
Q 004319 643 LAFRLGYHSAPSMRQLHLHVISQ 665 (761)
Q Consensus 643 ~~~~~G~ha~pSv~HLHlHVIs~ 665 (761)
..++.|-.++++|+|||+|||.+
T Consensus 109 i~~n~g~~aGq~V~HlHiHiiPR 131 (161)
T 3lb5_A 109 VMQFNEAASQQTVYHLHFHIIPR 131 (161)
T ss_dssp EEEEESGGGTCCSCSCCEEEEEE
T ss_pred EEEecCcccCCCCCEEEEEEEcc
Confidence 45666777788999999999986
No 41
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.55 E-value=1.9e-14 Score=141.94 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=78.7
Q ss_pred HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-c
Q 004319 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-S 642 (761)
Q Consensus 564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~ 642 (761)
+.+++.. ..|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|..+.....+.+.+.+..++ +
T Consensus 40 FC~Ii~~--e~p~~iV~e~e~~~afld~~P~~pgH~LVIPk-rHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~n 116 (173)
T 3l7x_A 40 FCKIVAG--DIPSSKVYEDEDVLAFLDISQATKGHTLVIPK-EHVRNALEMTQTQAANLFARIPKIARALQKATKADGLN 116 (173)
T ss_dssp HHHHHHT--SSCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEE
T ss_pred ccccccC--CCCceEEEECCCEEEEEcCCCCCCcEEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 4455543 34677999999999999999999999999999 799999999999877666666555555555444433 3
Q ss_pred eeeeecccCCCcccceeeeeecCCc
Q 004319 643 LAFRLGYHSAPSMRQLHLHVISQDF 667 (761)
Q Consensus 643 ~~~~~G~ha~pSv~HLHlHVIs~d~ 667 (761)
..++.|..++++|+|||+|||++--
T Consensus 117 i~~n~g~~aGq~V~HlHiHiIPR~~ 141 (173)
T 3l7x_A 117 IINNNEETAGQTVFHAHVHLVPRFA 141 (173)
T ss_dssp EEECCSGGGTCCSCSCCEEEEEECC
T ss_pred EEEecCcccCCCcCEEEEEEEeccc
Confidence 4566667778899999999998733
No 42
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.53 E-value=1.7e-14 Score=138.00 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCC
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSA 652 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~ 652 (761)
.|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.....+.+.+.+..++ +..++.|..++
T Consensus 17 ~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk-~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g 95 (145)
T 1y23_A 17 IPSAKVYEDEHVLAFLDISQVTKGHTLVIPK-THIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAG 95 (145)
T ss_dssp SCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGT
T ss_pred CCCCEEEECCCEEEEECCCCCCCCeEEEEEh-hhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcCCC
Confidence 3668999999999999999999999999999 899999999999987777666665555555554433 33455555667
Q ss_pred CcccceeeeeecCC
Q 004319 653 PSMRQLHLHVISQD 666 (761)
Q Consensus 653 pSv~HLHlHVIs~d 666 (761)
++|+|||+|||++-
T Consensus 96 ~~v~HlH~HiiPr~ 109 (145)
T 1y23_A 96 QSVFHYHMHIIPRY 109 (145)
T ss_dssp CCSSSCCEEEEEEC
T ss_pred CCcCEEEEEEEccc
Confidence 89999999999853
No 43
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.52 E-value=3.6e-14 Score=137.33 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=74.0
Q ss_pred CCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319 575 KDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS 654 (761)
Q Consensus 575 p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS 654 (761)
|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|++++...|..+.....+.+++.+..++ +|++ .++++
T Consensus 19 ~~~iv~e~~~~~a~~d~~p~~pgh~LViPk-~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g---~ni~-~~gq~ 93 (154)
T 2oik_A 19 GGEILWQDALCRVVHVENQDYPGFCRVILN-RHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDK---INLA-SLGNM 93 (154)
T ss_dssp CSEEEEECSSEEEEECCCTTCTTCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSE---EEEE-ECCSS
T ss_pred CCeEEEECCcEEEEEcCCCCCCeEEEEEec-CCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc---EEhH-HhCCC
Confidence 567999999999999999999999999999 899999999999988777777777777666655543 5665 46789
Q ss_pred ccceeeeeecC
Q 004319 655 MRQLHLHVISQ 665 (761)
Q Consensus 655 v~HLHlHVIs~ 665 (761)
++|||+|||++
T Consensus 94 v~HlHiHiiPr 104 (154)
T 2oik_A 94 TPHVHWHVIPR 104 (154)
T ss_dssp SCSCEEEEEEE
T ss_pred CCEEEEEEeCC
Confidence 99999999987
No 44
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.51 E-value=1.2e-14 Score=137.75 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=66.3
Q ss_pred CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccC--
Q 004319 574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHS-- 651 (761)
Q Consensus 574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha-- 651 (761)
.|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|. ..++++.+.. ..++ +++|+|.
T Consensus 16 ~~~~iv~e~~~~~af~d~~p~~pgh~lViPk-~H~~~l~dL~~~~~~~l~---~~~~~v~~~~-~~~~---~ni~~n~g~ 87 (135)
T 3r6f_A 16 KGANIIYETDRLFALIDRYPLSKGHFLVIPK-AHHPYLHNYKPEELSGVL---DTIRHLVQKF-GFER---YNILQNNGN 87 (135)
T ss_dssp HCCSCCEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCGGGGTTHH---HHHHHHHHHH-TCCS---EEEECCSSS
T ss_pred CCceEEEECCCEEEEECCCCCCCCeEEEEEh-hHhCCHhHCCHHHHHHHH---HHHHHHHHHh-CCCC---eEEEEEcCC
Confidence 4567999999999999999999999999999 799999999998754443 3344444433 3332 5666655
Q ss_pred CCcccceeeeeecCC
Q 004319 652 APSMRQLHLHVISQD 666 (761)
Q Consensus 652 ~pSv~HLHlHVIs~d 666 (761)
+++|+|||+|||.+-
T Consensus 88 gq~v~HlH~HiiPR~ 102 (135)
T 3r6f_A 88 HQEVFHVHFHVIPFV 102 (135)
T ss_dssp SCSSSSCCEEEEECC
T ss_pred CCCccEEEEEEeccc
Confidence 569999999999873
No 45
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.49 E-value=3.2e-13 Score=141.20 Aligned_cols=128 Identities=23% Similarity=0.318 Sum_probs=100.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCC--Cc-HHH-----HHHHHHHHHHCCCcEEEeCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKS--GT-KVQ-----CLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~--~~-~~~-----~~~~~~~~L~~g~~VIID~tn 87 (761)
++.+|+|+|+|||||||+|+.|++. .+..+.+++.|.++.... .. ... ....+...+.. ..||+|+++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~ 81 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTN 81 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCc
Confidence 4579999999999999999999987 665555568898864321 11 111 12445566666 889999999
Q ss_pred CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCcc
Q 004319 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLS 154 (761)
Q Consensus 88 ~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~ 154 (761)
+...+|..+.++ +..+....+|+|++|.++|.+|+.+|.. ..+.+.+.+++..++.|...
T Consensus 82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-------~~~~~~l~~~~~~~e~~~~~ 142 (260)
T 3a4m_A 82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-------KIPNEVIKKMYEKFDEPGKK 142 (260)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------SSCHHHHHHHHHHCCCTTSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHhcCcccc
Confidence 999999999888 7778888999999999999999999863 34678899999999888753
No 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.48 E-value=8.8e-14 Score=147.50 Aligned_cols=174 Identities=20% Similarity=0.261 Sum_probs=122.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccC-------CC---CCcH-H-----HHHHHHHHHH---HCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK-------GK---SGTK-V-----QCLTSASSAL---KKG 78 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~-------~~---~~~~-~-----~~~~~~~~~L---~~g 78 (761)
+|.+|+|+|+|||||||+|+.|++.+ + +.+++.|.++. ++ +... + .+...+...+ ..|
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 36799999999999999999999874 5 88899997742 21 1111 1 1224556677 788
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 004319 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF 157 (761)
Q Consensus 79 ~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgF 157 (761)
..||+|++++...+|..|.++ ...++.+.+|+|++|.+++.+|+.+|..+ .++++.+.++++.++.+...+.|
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~e~i~~~~~~~~~~~~~~~~ 152 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLPVY 152 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG------CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHHhcccCCcce
Confidence 999999999999999999888 77788888999999999999999999865 56789999999888766433322
Q ss_pred ------eEEEEcCChhhHHHHHHHhhccCCCccccCCCCCCCCCcchhhHHHHHHHHhhC
Q 004319 158 ------SRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD 211 (761)
Q Consensus 158 ------d~V~vv~~~~ei~~~l~~~~~lgp~diighGc~~~~~~~~~~~~~i~~f~~~~~ 211 (761)
...++++.+..+... ....|++.. +|.. .+.-+|+..+|+...
T Consensus 153 ~~~~~~~~~i~iD~dgtl~~~----~~~~~~~~~--~~~~-----~~~~~g~~e~L~~L~ 201 (301)
T 1ltq_A 153 NGTPGKPKAVIFDVDGTLAKM----NGRGPYDLE--KCDT-----DVINPMVVELSKMYA 201 (301)
T ss_dssp CCCTTSCEEEEEETBTTTBCC----SSCCTTCGG--GGGG-----CCBCHHHHHHHHHHH
T ss_pred eccccccceEEEeCCCCcccc----cCCCchhhh--hccc-----cCCChHHHHHHHHHH
Confidence 234455544433221 112344432 2332 334567777777664
No 47
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.46 E-value=8.7e-13 Score=131.80 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=98.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCCc---HHHHHHHHHHHHHCCCcEEEeC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGT---KVQCLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~~---~~~~~~~~~~~L~~g~~VIID~ 85 (761)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +.... ....+..+...+..|..||+|+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~ 93 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSC 93 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEEC
Confidence 4467999999999999999999999998 66788888742 22111 1223455666677889999999
Q ss_pred CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCC
Q 004319 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG 156 (761)
Q Consensus 86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~Eg 156 (761)
+++....|..+..+. +....+|+|++|.+++.+|+.+|..+ ..+.+.+.+++..++++...+.
T Consensus 94 ~~~~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
T 3t61_A 94 SALKRSYRDKLRESA--PGGLAFVFLHGSESVLAERMHHRTGH------FMPSSLLQTQLETLEDPRGEVR 156 (202)
T ss_dssp CCCSHHHHHHHHHTS--TTCCEEEEEECCHHHHHHHHHHHHSS------CCCHHHHHHHHHHCCCCTTSTT
T ss_pred CCCCHHHHHHHHHhc--CCCeEEEEEeCCHHHHHHHHHHhhcc------CCCHHHHHHHHHhcCCCCCCCC
Confidence 999988888776652 23456899999999999999999864 2347888899888887754443
No 48
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.35 E-value=2.1e-12 Score=122.63 Aligned_cols=84 Identities=24% Similarity=0.159 Sum_probs=69.1
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHH-HHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQ-TMHAVGMKWAEKFLHEDASLAFRLGYHSAPS 654 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~-~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS 654 (761)
+.+|++++.+++|.|.+|..++|+||+|| +|+.++.||++++...|. .+..+++.+ ++....+ .+|+| .++++
T Consensus 13 ~~~v~~~~~~~v~l~~~p~~pGh~lV~~k-~h~~~l~dl~~~~~~~l~~~~~~v~~~l-~~~~~~~---~~N~~-~aGq~ 86 (137)
T 3ohe_A 13 THKLGESRLCDVLLMNDNTWPWVILVPRV-SGIREIYELPNEQQQRLLFESSALSEGM-MELFGGD---KMNVA-ALGNM 86 (137)
T ss_dssp EEEEEECSSEEEEEESCTTSCEEEEEESC-TTCCSGGGSCHHHHHHHHHHHHHHHHHH-HHHTTCS---EEEEE-ECCSS
T ss_pred cEEEEECCcEEEEEcCCCCCCEEEEEecc-cccCChHHCCHHHHHHHHHHHHHHHHHH-HHHhCCC---eEEEe-eccCc
Confidence 46899999999999999999999999999 799999999999876444 455544444 4444443 38888 88999
Q ss_pred ccceeeeeecC
Q 004319 655 MRQLHLHVISQ 665 (761)
Q Consensus 655 v~HLHlHVIs~ 665 (761)
|+|+|+|||.+
T Consensus 87 V~HlH~HviPR 97 (137)
T 3ohe_A 87 VPQLHLHHIVR 97 (137)
T ss_dssp CCSCCEEEEEE
T ss_pred CCEEEEEEeCC
Confidence 99999999987
No 49
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.35 E-value=4.7e-12 Score=134.55 Aligned_cols=150 Identities=14% Similarity=0.156 Sum_probs=106.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC---------c--------HH-H-HHHHHHHHHHC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--------KV-Q-CLTSASSALKK 77 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~---------~--------~~-~-~~~~~~~~L~~ 77 (761)
..+|.+|+|+|+|||||||+|+.|++.++..+.+|+.|.++....+ . +. . ....+...+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~ 109 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ 109 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999988544788999988643211 0 00 0 12345667788
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHH----HHHHHhcccccCCCCCCChHHHHHHHH----hhh
Q 004319 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLC----ISRSVKRIEHEGNLQGGKAAAVVNRML----QKK 148 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~----~~R~~~R~~~~~~~~~~v~~~vI~r~~----~~~ 148 (761)
|.+||+|+++....++..+++. +..++.+.+++|.+|.+++ .+|+.+|..+.+.....++++....++ ..+
T Consensus 110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~ 189 (287)
T 1gvn_B 110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNL 189 (287)
T ss_dssp TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998888888888 8888888889999999999 888888765432112234444444433 333
Q ss_pred cCCCccCCceEEEEcCCh
Q 004319 149 ELPKLSEGFSRITLCQNE 166 (761)
Q Consensus 149 e~P~~~EgFd~V~vv~~~ 166 (761)
++......||.+++.+..
T Consensus 190 ~el~~~~~~d~v~v~d~~ 207 (287)
T 1gvn_B 190 ETLHKTGLFSDIRLYNRE 207 (287)
T ss_dssp HHHHHHTCCSCEEEECTT
T ss_pred HHHHcCCCCCeEEEEeCC
Confidence 322224557888888764
No 50
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.35 E-value=3.8e-12 Score=128.96 Aligned_cols=105 Identities=18% Similarity=0.356 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHCCCcEE
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKKGKSVF 82 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~g~~VI 82 (761)
+|+|.|+|||||+|+|+.|++.++ +.||+..++ + .|...+.+-....+..++.....||
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceE
Confidence 689999999999999999999999 888986443 2 2444455555677888888888899
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccc
Q 004319 83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
+|+.+.+..+...|..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~ 127 (206)
T 3sr0_A 80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRIN 127 (206)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccc
Confidence 99999999999888766 4444433 5889999999999999999643
No 51
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=99.34 E-value=5.9e-14 Score=143.22 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=96.5
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccc-cccCCCCcccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVA 265 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 265 (761)
.|+-+. +.+.++++.|++.+++.........|.+. .|.+++++|.+++|.|.|-|..+.. ..+.+....+.
T Consensus 68 gGGV~~-AI~~aaG~~L~~ec~~~~~~~~~~~G~a~-------iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~ 139 (221)
T 3q71_A 68 RGPLSK-SLLEKAGPELQEELDTVGQGVAVSMGTVL-------KTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRE 139 (221)
T ss_dssp SSHHHH-HHHHHHCTHHHHHHHHHHHTSCCCTTCEE-------EEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHH
T ss_pred CchHHH-HHHHHHhHHHHHHHHHHhccCCCCCCeEE-------EEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHH
Confidence 455555 67888899999999987542222224443 6889999999999999988875331 22335555666
Q ss_pred ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC--C---eEEEEecccc
Q 004319 266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--N---ARLVLVDLTQ 323 (761)
Q Consensus 266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--~---i~~v~vD~~~ 323 (761)
|+. .....+++|||||+||||+||||+++||++++++|++|++..+ . |+||+++.+.
T Consensus 140 ~L~-~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~V~fv~f~~d~ 201 (221)
T 3q71_A 140 CME-ITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLLHPSDH 201 (221)
T ss_dssp HHH-HHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCEEEEEECTTCH
T ss_pred HHH-HHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeCCCH
Confidence 676 5666899999999999999999999999999999999999863 2 5566655443
No 52
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.33 E-value=4.4e-12 Score=129.53 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=97.9
Q ss_pred cccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHH
Q 004319 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSAL 75 (761)
Q Consensus 15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L 75 (761)
....++.+|+|.|+|||||+|+|+.|++.++ +.+|+..++ + .|...+.+.....+.+++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3556788999999999999999999999999 888986443 2 233333344445555555
Q ss_pred H----CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh--
Q 004319 76 K----KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-- 148 (761)
Q Consensus 76 ~----~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-- 148 (761)
. ..+.||+|+.+.+..+...|... .... .+|+|++|.+++.+|+..|....+ +.++ .++++.+.++.|
T Consensus 102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~~e~~~~Rl~~R~~~~~-R~DD-~~e~i~~Rl~~Y~~ 176 (217)
T 3umf_A 102 IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVSEEVMRKRLLKRAETSN-RVDD-NEETIVKRFRTFNE 176 (217)
T ss_dssp HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHSCC-------CHH-HHHHHHHHHHHHHH
T ss_pred hhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCCHHHHHHHHhcccccCC-CCCC-CHHHHHHHHHHHHH
Confidence 3 34579999999999998888766 4444 389999999999999999975322 3333 345555544433
Q ss_pred -cCCCc--cCCceEEEEcCChhhHHHH
Q 004319 149 -ELPKL--SEGFSRITLCQNENDVQAA 172 (761)
Q Consensus 149 -e~P~~--~EgFd~V~vv~~~~ei~~~ 172 (761)
..|.. ++.-..++.++...+++++
T Consensus 177 ~t~pl~~~Y~~~~~l~~Idg~~~~eeV 203 (217)
T 3umf_A 177 LTKPVIEHYKQQNKVITIDASGTVDAI 203 (217)
T ss_dssp HTHHHHHHHHTTTCEEEEETTSCHHHH
T ss_pred HHHHHHHHHHhcCCEEEEECCCCHHHH
Confidence 22321 2222345666655455444
No 53
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.32 E-value=4.8e-11 Score=116.07 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=86.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCCcHH------H-HHHHHHHHHHCCCcEE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKV------Q-CLTSASSALKKGKSVF 82 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~~~~------~-~~~~~~~~L~~g~~VI 82 (761)
+..+|+|+|+|||||||+++.|+..++ +.+++.|.+.. +...... . ....+...+..+..+|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 84 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSL 84 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEE
Confidence 346899999999999999999999888 77889888742 2211111 1 1133344455688999
Q ss_pred EeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 004319 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P 151 (761)
+|.+.+...+|..+. ..+..+.+|+|++|.+++.+|+.+|..+. .....+.+++..++.|
T Consensus 85 i~~~~~~~~~~~~l~---~~~~~~~vv~l~~~~e~~~~R~~~R~~~~------~~~~~~~~~~~~~~~~ 144 (175)
T 1knq_A 85 IVCSALKKHYRDLLR---EGNPNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETLQEP 144 (175)
T ss_dssp EECCCCSHHHHHHHH---TTCTTEEEEEEECCHHHHHHHHHTSTTCC------CCHHHHHHHHHHCCCC
T ss_pred EEeCchHHHHHHHHH---hcCCCEEEEEEECCHHHHHHHHHhccCCC------CchHHHHHHHHhhhCc
Confidence 998888777666553 33345679999999999999999997542 2356677777766665
No 54
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.31 E-value=3.2e-12 Score=143.59 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCC-cEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccC
Q 004319 574 HKD-DLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHS 651 (761)
Q Consensus 574 ~p~-~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha 651 (761)
.|+ .+|||||++++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++.+..++ +..++.|..+
T Consensus 306 ~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk-~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~ 384 (440)
T 1ems_A 306 IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPK-RVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDA 384 (440)
T ss_dssp CCGGGEEEECSSEEEEECSSCSSTTCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGG
T ss_pred cCCceEEEECCCEEEEEcCCcCCCCeEEEEEc-cccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Confidence 444 5899999999999999999999999999 799999999999877666666655555555444432 2234444455
Q ss_pred CCcccceeeeeecC
Q 004319 652 APSMRQLHLHVISQ 665 (761)
Q Consensus 652 ~pSv~HLHlHVIs~ 665 (761)
+++|+|||+|||++
T Consensus 385 gq~v~HlH~Hiipr 398 (440)
T 1ems_A 385 GQTVPHVHIHILPR 398 (440)
T ss_dssp TCCSSSCCEEEEEE
T ss_pred CCCccEEEEEEeCC
Confidence 67999999999986
No 55
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.31 E-value=4e-12 Score=122.36 Aligned_cols=85 Identities=19% Similarity=0.107 Sum_probs=69.0
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCcc
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSM 655 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pSv 655 (761)
+.+|++++.+++|.|.+|.++||+||+|| +|+.++.||++++...|......+.+.+++....+ .+|+| -++++|
T Consensus 13 ~~~v~~~~~~~v~L~~~p~~pGh~LV~pk-~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~---~~Ni~-~aGq~V 87 (149)
T 3i24_A 13 CIVLGNLPLCKVLLIKEDIGPWLILVPRI-EELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPD---KINIG-ALGNLV 87 (149)
T ss_dssp EEEEEECSSEEEEEECBSSTTEEEEEESC-TTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCS---EEEEE-ECCSSC
T ss_pred CEEEEECCCEEEEEcCCCCCCEEEEEeCc-cccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEh-hhhCCC
Confidence 45899999999999999999999999999 79999999999987644444444444444444444 37888 489999
Q ss_pred cceeeeeecC
Q 004319 656 RQLHLHVISQ 665 (761)
Q Consensus 656 ~HLHlHVIs~ 665 (761)
+|||+|||.+
T Consensus 88 ~HlH~HvIPR 97 (149)
T 3i24_A 88 PQLHIHHIAR 97 (149)
T ss_dssp CSCCEEEEEE
T ss_pred CEEEEEEeCC
Confidence 9999999987
No 56
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.30 E-value=3.5e-11 Score=120.26 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=98.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCCcHH-------HHHHHHHHHHHCCCcE
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKV-------QCLTSASSALKKGKSV 81 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~~~~-------~~~~~~~~~L~~g~~V 81 (761)
.++.+|+|+|+|||||||+++.|+..++ +.+++.|.+.. +...... .....+...+..|..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 104 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVST 104 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCE
Confidence 3567999999999999999999999887 77788887732 2211111 1123445556788899
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEE
Q 004319 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT 161 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~ 161 (761)
|+|...+....|..+.++ ...+.+|+|++|.+++.+|+.+|..+. .+.+.+.+++..++++...+. + +
T Consensus 105 iid~~~~~~~~~~~l~~~---~~~~~vv~l~~~~e~l~~Rl~~R~~~~------~~~~~l~~~~~~~~~~~~~~~-~--~ 172 (200)
T 4eun_A 105 IITCSALKRTYRDVLREG---PPSVDFLHLDGPAEVIKGRMSKREGHF------MPASLLQSQLATLEALEPDES-G--I 172 (200)
T ss_dssp EEEECCCCHHHHHHHTTS---SSCCEEEEEECCHHHHHHHHTTCSCCS------SCGGGHHHHHHHCCCCCTTSC-E--E
T ss_pred EEEchhhhHHHHHHHHHh---CCceEEEEEeCCHHHHHHHHHhcccCC------CCHHHHHHHHHHhCCCCCCCC-e--E
Confidence 999988888777766443 224568999999999999999997642 235677888887776654443 2 3
Q ss_pred EcCChhhHHHHHH
Q 004319 162 LCQNENDVQAALD 174 (761)
Q Consensus 162 vv~~~~ei~~~l~ 174 (761)
++++..+++++..
T Consensus 173 ~Id~~~~~~e~~~ 185 (200)
T 4eun_A 173 VLDLRQPPEQLIE 185 (200)
T ss_dssp EEETTSCHHHHHH
T ss_pred EEECCCCHHHHHH
Confidence 3433334444433
No 57
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.29 E-value=7.5e-11 Score=114.75 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=77.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CCC-----------------C-cHHH----HHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS-----------------G-TKVQ----CLTSASSA 74 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~~-----------------~-~~~~----~~~~~~~~ 74 (761)
+.+|+|+|+|||||||+|+.|++.++..+.+++.|.+.+ +.. . .+.. ....+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM 82 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHH
Confidence 468999999999999999999999987777777776521 100 0 1111 12335566
Q ss_pred HHCCCcEEEeCCCCC-HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 75 LKKGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 75 L~~g~~VIID~tn~~-~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
+..|..||+|.+.+. ...+..+++. +.. .+.+|+|++|.+++.+|+.+|..+
T Consensus 83 ~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~l~~R~~~r~~~ 136 (178)
T 1qhx_A 83 ARAGARIIIDDVFLGGAAAQERWRSFVGDL--DVLWVGVRCDGAVAEGRETARGDR 136 (178)
T ss_dssp HHTTCEEEEEECCTTTHHHHHHHHHHHTTC--CEEEEEEECCHHHHHHHHHHTSSS
T ss_pred HhcCCeEEEEeccccChHHHHHHHHHhcCC--cEEEEEEECCHHHHHHHHHhhCCc
Confidence 678889999997763 4556666666 543 356788999999999999998753
No 58
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.28 E-value=1.1e-11 Score=121.87 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=78.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC------CCC-cHHH---------HHHHHHHHHHCCCcE
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKVQ---------CLTSASSALKKGKSV 81 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~------~~~-~~~~---------~~~~~~~~L~~g~~V 81 (761)
.++.+|+|+|+|||||||+++.|++.++ +.+++.|.+++. ... .+.. +...+...+..|..|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 80 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR--LPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL 80 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC--CeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4578999999999999999999999988 566888877421 111 1111 112345567789999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
|+|+++.....+..+.++ ...+....+|+|++|.+++.+|+.+|..
T Consensus 81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 999988333333456555 4455677899999999999999999875
No 59
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.28 E-value=5.7e-11 Score=116.42 Aligned_cols=108 Identities=22% Similarity=0.400 Sum_probs=78.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHH--
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK-- 76 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~-- 76 (761)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +...........+...+.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 81 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN 81 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC--CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999988 77888866521 111112222233334443
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 77 ~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+..||+|+++....++..|... ......-.+|+|++|.+++.+|+.+|..
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 56789999999988888888766 4322233589999999999999999864
No 60
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.27 E-value=4.5e-11 Score=117.34 Aligned_cols=107 Identities=19% Similarity=0.377 Sum_probs=76.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--------------------CCCCCcHHHHH----HHHHH-
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------------KGKSGTKVQCL----TSASS- 73 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--------------------~~~~~~~~~~~----~~~~~- 73 (761)
+|.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. ++......... ..+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 79 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT 79 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence 367899999999999999999999998 6778877652 11111111111 11111
Q ss_pred --HHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 74 --ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 74 --~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+..+..||+|+++....++..|... ......-.+|+|++|.+++.+|+.+|..
T Consensus 80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 22357889999999999888878766 4332233689999999999999999964
No 61
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.26 E-value=2.2e-11 Score=126.63 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=89.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC---------CCc----H-----HHH-HHHHHHHHHC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT----K-----VQC-LTSASSALKK 77 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~---------~~~----~-----~~~-~~~~~~~L~~ 77 (761)
..+|.+|+|+|+|||||||+|+.|++.++..+.+++.|.++... .+. . ... ...+...+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL 108 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhc
Confidence 44678999999999999999999999987667789999985421 110 1 111 2344455677
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
|.+||||+++....++..+.++ +..++.+.++++++|.++|.+|+.+|...
T Consensus 109 g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~ 160 (253)
T 2p5t_B 109 GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYEE 160 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHH
Confidence 8899999999888888888888 77888899999999999999999998653
No 62
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=99.25 E-value=3e-13 Score=137.57 Aligned_cols=114 Identities=10% Similarity=-0.003 Sum_probs=88.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccc--cccCCCC
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE--EVKGTEN 261 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 261 (761)
.|+.+. +.+..+++.|++.+++.- .+..+ |.+. .|.+++++|.+++|+|.|-|..+.. ....+..
T Consensus 65 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~--G~a~-------iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~ 134 (214)
T 3q6z_A 65 YGGLAA-ALSKAAGPELQADCDQIVKREGRLLP--GNAT-------ISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRR 134 (214)
T ss_dssp CSHHHH-HHHHHHCTHHHHHHHHHHHHHCCCCT--TCEE-------EEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHH
T ss_pred CchHHH-HHHHhhhHHHHHHHHHHHHHcCCCCC--CeEE-------EEcCCCCCCCEEEEecCCcccCCCcchHHHHHHH
Confidence 455665 778888899999988752 12222 3333 5788999999999999998875331 2234556
Q ss_pred ccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhc
Q 004319 262 PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (761)
Q Consensus 262 ~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~ 311 (761)
..+.|+. .....+++|||||+||||+||||+++||++++++|++|++..
T Consensus 135 ~y~~~L~-~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~ 183 (214)
T 3q6z_A 135 AVQLSLC-LAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183 (214)
T ss_dssp HHHHHHH-HHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHH-HHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6667776 556679999999999999999999999999999999999876
No 63
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.21 E-value=5.5e-11 Score=122.97 Aligned_cols=109 Identities=23% Similarity=0.303 Sum_probs=82.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK 77 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~ 77 (761)
...|.+|+|+|+|||||||+|+.|++.++ +.+++.|++. ++...+.......+..++..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~ 103 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKT 103 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Confidence 45788999999999999999999999998 7788876542 12233333344455556654
Q ss_pred ---CCcEEEeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHhccc
Q 004319 78 ---GKSVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 ---g~~VIID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+..||+|+......+...+..+ ...+.. -.+|+|++|.+++.+|+.+|..
T Consensus 104 ~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~ 158 (243)
T 3tlx_A 104 PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLI 158 (243)
T ss_dssp GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCC
Confidence 6789999988888888877665 333332 3588999999999999999974
No 64
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.21 E-value=3.9e-11 Score=113.59 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=66.6
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHH-HHHHHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQ-ILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS 654 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~-lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS 654 (761)
+.+|++++.+.++.+.+|..+ |+|||||.+|+.++.||++++.. ++..+..+++.+ ++....++ +|+| .++++
T Consensus 15 ~~~v~~~~~~~v~l~~~~~~p-~~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l-~~~~~~~~---~N~~-~aGq~ 88 (135)
T 3nrd_A 15 GIPIGTLGLCQMRLMNDRRWP-WLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGL-KKATGAEK---INIG-ALGNI 88 (135)
T ss_dssp EEEEEECSSEEEEEESCTTSC-EEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHH-HHHHTCSE---EEEE-ECCSS
T ss_pred CEEEEECCcEEEEEcCCCCCC-EEEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHH-HHhcCCCe---EEEe-eccCC
Confidence 458999999999999999999 56888885699999999999875 444444444444 44444443 7888 78999
Q ss_pred ccceeeeeecC
Q 004319 655 MRQLHLHVISQ 665 (761)
Q Consensus 655 v~HLHlHVIs~ 665 (761)
|+|||+|||.+
T Consensus 89 V~HlH~HviPR 99 (135)
T 3nrd_A 89 VRQLHVHVIAR 99 (135)
T ss_dssp CCSCCEEEEEE
T ss_pred CCEEEEEEecC
Confidence 99999999997
No 65
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.21 E-value=9.6e-11 Score=115.49 Aligned_cols=105 Identities=25% Similarity=0.404 Sum_probs=77.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHH----HHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSA 74 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~----~~~~~~ 74 (761)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. ++......... ..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~ 84 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAK 84 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999998 6778876642 12222222222 333444
Q ss_pred HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+..|..||+|+++....++..|... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 85 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 85 VNTSKGFLIDGYPREVQQGEEFERRIGQPT---LLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp TTTCSCEEEESCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHT
T ss_pred cccCCcEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHccCC
Confidence 5578899999988887777766555 4333 489999999999999999864
No 66
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.20 E-value=6.1e-11 Score=118.22 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=77.4
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHH-
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL- 75 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L- 75 (761)
....+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+ ++ +...........+.+++
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~ 93 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLN 93 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Confidence 445678999999999999999999999998 556877654 21 12222222223333333
Q ss_pred --HCCCcEEEeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHhcc
Q 004319 76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 76 --~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
..+..||+|+++....++..+..+ ...+.. -.+|+|++|.+++.+|+.+|.
T Consensus 94 ~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 94 NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred cccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 246789999988888887776665 433332 368999999999999999985
No 67
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=99.20 E-value=1.3e-12 Score=129.75 Aligned_cols=118 Identities=9% Similarity=0.106 Sum_probs=90.3
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVAS 266 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (761)
.|+-+. +.+.++++.|++.+++... . ..|... .|.+++++|.+++|.|.|.| +..-.+.|
T Consensus 50 ggGV~~-aI~~aaG~~l~~ec~~~~~-~--~~G~a~-------iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~ 109 (183)
T 4abl_A 50 KAGVSK-AILECAGQNVERECSQQAQ-Q--RKNDYI-------ITGGGFLRCKNIIHVIGGND---------VKSSVSSV 109 (183)
T ss_dssp CSTHHH-HHHHHHCHHHHHHHHHHHH-H--SCCSEE-------EEECTTSBSSEEEEEETTSC---------HHHHHHHH
T ss_pred CccHHH-HHHHHhhHHHHHHHHHhcC-C--CCCceE-------EecCCCCCCCEEEEeCcHHH---------HHHHHHHH
Confidence 355554 6788899999999998642 1 123333 67899999999999987754 44555666
Q ss_pred cccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-----CeEEEEecccccc
Q 004319 267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-----NARLVLVDLTQGS 325 (761)
Q Consensus 267 ~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-----~i~~v~vD~~~~s 325 (761)
+. .....+++|||||+||||+||||+++||++++++|++|+++++ .++||+++..++.
T Consensus 110 L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~~~~~ 172 (183)
T 4abl_A 110 LQ-ECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLD 172 (183)
T ss_dssp HH-HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCHHHHH
T ss_pred HH-HHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHHHH
Confidence 66 5566799999999999999999999999999999999999864 2566666554433
No 68
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=99.18 E-value=5.1e-12 Score=125.85 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=89.4
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCccccccccccccccccccccccc-ccccCCCCcc
Q 004319 188 GSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPE 263 (761)
Q Consensus 188 Gc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 263 (761)
|+.+. +.+..+++.+++.+++.- .+..+ |.+. .|.+++++|.+++|.|.|-|..+. ...+.+..-.
T Consensus 32 gGv~~-aI~~aaG~~l~~e~~~~~~~~g~~~~--G~a~-------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y 101 (184)
T 1spv_A 32 GGVDG-AIHRAAGPALLDACLKVRQQQGDCPT--GHAV-------ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAY 101 (184)
T ss_dssp SHHHH-HHHHHHCHHHHHHHHHHHHHHCSCCT--TCEE-------EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHH
T ss_pred chHHH-HHHHHhCHHHHHHHHHHHHhcCCCCC--CCEE-------EeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHH
Confidence 44443 567777888888888762 12222 3332 577899999999999998776432 1222234444
Q ss_pred ccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEeccccc
Q 004319 264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLTQG 324 (761)
Q Consensus 264 ~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~~~ 324 (761)
+.|+. .....+++|||||+||||+||||+++||++++++|++|++..+. +.|+.+|..++
T Consensus 102 ~~~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~~v~~~~~~~ 164 (184)
T 1spv_A 102 LNSLR-LVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENA 164 (184)
T ss_dssp HHHHH-HHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEEEEESSHHHH
T ss_pred HHHHH-HHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence 55554 44557999999999999999999999999999999999998654 55555554443
No 69
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.18 E-value=4.9e-11 Score=130.20 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=71.0
Q ss_pred EEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCC-----
Q 004319 578 LLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSA----- 652 (761)
Q Consensus 578 vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~----- 652 (761)
+|||||.++||.|.+|.+++|+||||| +|+.++.+|++++...|..++..+.+.+.+.+..+ .+++|+|.+
T Consensus 227 iV~E~e~~~af~~~~p~~P~h~lViPk-~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~---~yn~~~n~gp~~g~ 302 (351)
T 1z84_A 227 VIDESSHFVSVAPFAATYPFEIWIIPK-DHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDP---PYNYMIHTSPLKVT 302 (351)
T ss_dssp EEEECSSEEEEECTTCSSTTCEEEEES-SCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEEECCCTTCC
T ss_pred EEecCCcEEEEeccCCCCCeEEEEEec-cccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCC---CEEEEEeCCCccCC
Confidence 899999999999999999999999999 89999999999998888888876655555544443 377777754
Q ss_pred ---CcccceeeeeecC
Q 004319 653 ---PSMRQLHLHVISQ 665 (761)
Q Consensus 653 ---pSv~HLHlHVIs~ 665 (761)
++++|||+|||++
T Consensus 303 ~~~q~v~HlHiHiiPR 318 (351)
T 1z84_A 303 ESQLPYTHWFLQIVPQ 318 (351)
T ss_dssp GGGGGGCCCEEEEEEC
T ss_pred CCCCccceEEEEEEcc
Confidence 4789999999994
No 70
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.18 E-value=5.7e-11 Score=129.63 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=83.9
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCC---
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSA--- 652 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~--- 652 (761)
..+|||||.++||.|.+|.+++|+||||| +|+.++.+|++++...|..++....+.+.+.+..+ ..+++|+|..
T Consensus 210 ~~iV~E~e~~~af~~~~p~~pgh~lViPK-~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~--~~Yn~g~~~~p~~ 286 (348)
T 1gup_A 210 SRTVVETEHWLAVVPYWAAWPFETLLLPK-AHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCS--FPYSMGWHGAPFN 286 (348)
T ss_dssp TTEEEECSSEEEECCTTCCSTTCEEEEES-SCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSC--CCEEEEEECCCSS
T ss_pred ceEEEeCCcEEEEEccCCCCceEEEEEeC-cccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC
Confidence 36999999999999999999999999999 89999999999998877777765555555544432 1378888765
Q ss_pred ---CcccceeeeeecCCccccc-ccccccccccCcccc--cCHHHHHHHHHhc
Q 004319 653 ---PSMRQLHLHVISQDFNSKH-LKNKKHWNSFNTAFF--CDSVDVLEEISNH 699 (761)
Q Consensus 653 ---pSv~HLHlHVIs~d~~s~~-lk~kkH~nsF~t~fF--v~~~~v~~~l~~~ 699 (761)
++++|||+|||++=+.+.. +|..-.|... +..| ++.+++.++|++-
T Consensus 287 g~~q~v~HlHiHiiPpl~R~~~~~~~~~g~e~~-~~~~~~~~pE~~A~~Lr~~ 338 (348)
T 1gup_A 287 GEENQHWQLHAHFYPPLLRSATVRKFMVGYEML-AETQRDLTAEQAAERLRAV 338 (348)
T ss_dssp SSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHH-TCCEESSCHHHHHHHHHTS
T ss_pred CCCCcccEEEEEEecchhccCCcccceeeEecc-cCCCCCCCHHHHHHHHHhh
Confidence 4789999999993111111 1111111100 2222 3577888888654
No 71
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.17 E-value=1.5e-10 Score=132.70 Aligned_cols=131 Identities=16% Similarity=0.240 Sum_probs=89.6
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC------------CCcH-----HHH----HHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK------------SGTK-----VQC----LTSA 71 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~------------~~~~-----~~~----~~~~ 71 (761)
...++.+|+|+|+|||||||+|++|++.++ ....+++.|+++... .... ..+ +..+
T Consensus 31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~ 110 (520)
T 2axn_A 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDV 110 (520)
T ss_dssp --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999998874 456678888774210 0111 111 1223
Q ss_pred HHHH--HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319 72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 72 ~~~L--~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~ 146 (761)
...| ..|..||+|++|....+|..++++ +..++.+.+|++.++ .+++.+|+..|........+..+++++..+.+
T Consensus 111 ~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~ 189 (520)
T 2axn_A 111 KSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMK 189 (520)
T ss_dssp HHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHH
Confidence 3334 568899999999999999999988 777888888888888 56666677666543222233356666655533
No 72
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.17 E-value=1.1e-10 Score=115.42 Aligned_cols=105 Identities=21% Similarity=0.392 Sum_probs=77.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHH----HHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSA 74 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~----~~~~~~ 74 (761)
+++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. ++......... ..+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~ 87 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG--FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS 87 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 3567999999999999999999999998 7778876652 12222222222 223333
Q ss_pred HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+..+..||+|+++....++..|... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 88 ~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~---~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 88 LGDTRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp TTSCSCEEEETCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHTCC
T ss_pred cccCccEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHcCCC
Confidence 4468899999999988887777554 3333 489999999999999999865
No 73
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.17 E-value=6.1e-11 Score=119.47 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---g~ 79 (761)
.|+|+|+|||||||+|+.|++.++ +.+++.|++. .+...........+..++.. +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG--IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS--CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccC
Confidence 488999999999999999999998 6678875552 12223333344555566654 78
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~ 126 (761)
.+|+|+.+....++..+... ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 128 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRR 128 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCC
Confidence 89999988998888877766 4444433 58999999999999999994
No 74
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.17 E-value=1.4e-10 Score=111.28 Aligned_cols=116 Identities=19% Similarity=0.314 Sum_probs=80.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC-------Cc---H----------HHHHHHHHHHH--HCC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-------GT---K----------VQCLTSASSAL--KKG 78 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~-------~~---~----------~~~~~~~~~~L--~~g 78 (761)
.+|+|+|+|||||||+|+.| +.++ +.+++.|++..... .. . ......+...+ ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999 8888 66777554421100 00 0 01123455566 667
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 79 ~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~ 146 (761)
..||+|+. ....++..+.+. . ....+|+|++|.+++.+|+..|.... .....+++..++..
T Consensus 79 ~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~---~~~~~~~~~~r~~~ 140 (179)
T 3lw7_A 79 DLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD---DSKEISELIRRDRE 140 (179)
T ss_dssp SCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHHHH
T ss_pred CeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Confidence 88999997 888888888776 4 34679999999999999999997531 12455666666544
No 75
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.17 E-value=1.6e-10 Score=112.86 Aligned_cols=126 Identities=10% Similarity=0.125 Sum_probs=81.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc----ccc----CCCC-----CcHHH-HHHHHHHHHHC-CCcEEE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----TIN----KGKS-----GTKVQ-CLTSASSALKK-GKSVFL 83 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D----~i~----~~~~-----~~~~~-~~~~~~~~L~~-g~~VII 83 (761)
++.+|+|+|+|||||||+|+.|++.++..+. ++.| .++ ++.. ..+.+ ....+...+.. |..||+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~ 82 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV-FEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIV 82 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE-CCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-EchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 4679999999999999999999999885442 1321 121 1111 11212 23445555665 788999
Q ss_pred eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 004319 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P 151 (761)
|.+......+..+++. +..+..+..|+|++|.+++.+|+.+|..+. ...+.+.+++..++++
T Consensus 83 d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~ 145 (183)
T 2vli_A 83 PVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ------VNVGTVEDRLNELRGE 145 (183)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------CCHHHHHHHHHHHTSG
T ss_pred eeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc------hhHHHHHHHHHhhccc
Confidence 9998888777777776 555665667999999999999999987432 2356677777776655
No 76
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.16 E-value=2.3e-10 Score=110.15 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC--------------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-------------- 87 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn-------------- 87 (761)
+|+|+|+|||||||+++.|++.++ +.+++.|.+..... .....+. ....+..+..+|.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~-~~~~~~~-~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~ 78 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKS-GNEKLFE-HFNKLADEDNVIIDRFVYSNLVYAKKFKDYS 78 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC--CCEEECCCHHHHTT-CHHHHHH-HHHHHTTCCSEEEESCHHHHHHHTTTBTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeeecCcccccchh-HHHHHHH-HHHHHHhCCCeEEeeeecchHHHHHHHHHhh
Confidence 799999999999999999999998 66688887753322 1122222 34567788899999522
Q ss_pred -CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319 88 -LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (761)
Q Consensus 88 -~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~ 165 (761)
....++..+... .. ...+|+|++|.+++.+|+.+|.+. ....+.+.++.+.++.+...+... .+++++
T Consensus 79 ~~~~~~~~~l~~~~~~---~~~~i~l~~~~e~~~~R~~~r~r~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~id~ 148 (173)
T 3kb2_A 79 ILTERQLRFIEDKIKA---KAKVVYLHADPSVIKKRLRVRGDE------YIEGKDIDSILELYREVMSNAGLH-TYSWDT 148 (173)
T ss_dssp CCCHHHHHHHHHHHTT---TEEEEEEECCHHHHHHHHHHHSCS------CCCHHHHHHHHHHHHHHHHTCSSC-EEEEET
T ss_pred HhhHHHHHHHhccCCC---CCEEEEEeCCHHHHHHHHHhcCCc------chhhhHHHHHHHHHHHHHhhcCCC-EEEEEC
Confidence 233333333322 22 234899999999999999998532 222445555555555444333333 334444
No 77
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.15 E-value=1.2e-10 Score=114.07 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=75.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKKGK 79 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~g~ 79 (761)
++.+|+|+|+|||||||+++.|++.++ +.+++.|.+. ++...........+...+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC-
Confidence 356899999999999999999999988 7778876542 112222222334444445443
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
+|+|++.....++..+..+ ...+. .-.+|+|++|.+++.+|+.+|.
T Consensus 80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 9999988888777666555 44444 3368999999999999999986
No 78
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.15 E-value=9.2e-11 Score=118.02 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---g~ 79 (761)
.|+|+|+|||||||+|+.|++.++ +.+++.|++. .+...........+...+.. +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCC
Confidence 488999999999999999999998 6668876552 12222333334455555544 77
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~ 126 (761)
.+|+|+.+....++..+... ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 128 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRW 128 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 89999988998888877766 4444433 58999999999999999994
No 79
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.14 E-value=2.3e-10 Score=115.79 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=76.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHH---
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK--- 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~--- 76 (761)
.+.+|+|+|+|||||||+|+.|++.++ +.+++.|++.. +...........+..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 80 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP 80 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc
Confidence 346899999999999999999999998 67788755521 222233333444555554
Q ss_pred -CCCcEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhccc
Q 004319 77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 77 -~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+..||+|+......++..+..+ ...+..+ .+|+|++|.+++.+|+..|..
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~ 134 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLI 134 (220)
T ss_dssp GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCc
Confidence 46789999977777776665544 3333333 589999999999999999864
No 80
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=99.14 E-value=8e-12 Score=125.33 Aligned_cols=127 Identities=9% Similarity=0.110 Sum_probs=90.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA 265 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (761)
.|+.+. +.+..+++.+++.+++.-.. .....|.+. .|.+++++|.+++|.|.|-|.. ......+..-.+.
T Consensus 50 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~-------iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~ 120 (193)
T 2xd7_A 50 KEDIGK-ALEKAGGKEFLETVKELRKSQGPLEVAEAA-------VSQSSGLAAKFVIHCHIPQWGS-DKCEEQLEETIKN 120 (193)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHHHHHTCSCCTTCEE-------EEECTTSSSSEEEEEECCCTTS-TTHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHhhHHHHHHHHHHHHHcCCCCCCCeE-------EeeCCCCCCCEEEEECCCcCCC-cchHHHHHHHHHH
Confidence 355554 67788889999998875211 111123333 5788999999999999998863 1222234444555
Q ss_pred ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-----CeEEEEecccc
Q 004319 266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-----NARLVLVDLTQ 323 (761)
Q Consensus 266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-----~i~~v~vD~~~ 323 (761)
|+. .....+++|||||+||||+||||+++||++++++|++|++.++ .+.|+.+|..+
T Consensus 121 ~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l~~V~fv~~~~~~ 182 (193)
T 2xd7_A 121 CLS-AAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSES 182 (193)
T ss_dssp HHH-HHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCSSCCCCEEEEEECSHHH
T ss_pred HHH-HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHH
Confidence 665 4555799999999999999999999999999999999998753 24555554443
No 81
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.14 E-value=7.2e-10 Score=110.33 Aligned_cols=106 Identities=17% Similarity=0.330 Sum_probs=75.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc------C--------------CCCCcHHH----HHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------K--------------GKSGTKVQ----CLTSAS 72 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~------~--------------~~~~~~~~----~~~~~~ 72 (761)
...+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. . +....... +.+.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 89 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS 89 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 34567999999999999999999999998 6778877552 1 11111111 123444
Q ss_pred HHHHCC-CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 73 SALKKG-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 73 ~~L~~g-~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..+..| ..+|+|+......++..+... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~---~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 90 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHhccc
Confidence 556677 579999988777766655444 3333 488999999999999999864
No 82
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.14 E-value=2.1e-10 Score=116.21 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=75.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHHC---C
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK---G 78 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~~---g 78 (761)
..|+|+|+|||||||+|+.|++.++ +.+++.|++.. +...........+..++.. +
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG--LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence 5789999999999999999999998 77888765521 1122222233445555554 7
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccc
Q 004319 79 KSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 79 ~~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
..||+|+......+...+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 135 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH 135 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence 889999988776666655433 22222 235899999999999999998743
No 83
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=99.13 E-value=6.5e-12 Score=125.99 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=84.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA 265 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (761)
.|+.+. +.+..+++.+++.+++.-.. .....|.+. .|.+++++|.+++|.|.|-|.. ......+..-.+.
T Consensus 47 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~-------iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~ 117 (193)
T 1yd9_A 47 GGEVGS-TLEKKGGKEFVEAVLELRKKNGPLEVAGAA-------VSAGHGLPAKFVIHCNSPVWGS-DKCEELLEKTVKN 117 (193)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHHHHHHCSCCTTCEE-------EEECTTSSSSEEEEECCCCTTS-TTHHHHHHHHHHH
T ss_pred CchHHH-HHHHHhhHHHHHHHHHHHHHcCCCCCCCEE-------EecCCCCCCCEEEEeCCCCcCC-cchHHHHHHHHHH
Confidence 455555 67888889999988875211 111123332 5788999999999999988853 2222234445556
Q ss_pred ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhc
Q 004319 266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (761)
Q Consensus 266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~ 311 (761)
|+. .....+++|||||+||||+||||+++||++++++|++|++..
T Consensus 118 ~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~ 162 (193)
T 1yd9_A 118 CLA-LADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVST 162 (193)
T ss_dssp HHH-HHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 665 445579999999999999999999999999999999999874
No 84
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=99.12 E-value=1.8e-11 Score=123.07 Aligned_cols=111 Identities=9% Similarity=0.046 Sum_probs=85.3
Q ss_pred CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCC
Q 004319 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (761)
..+..+++.+++.+++.+.- ..|.+. .|.+++++|.+++|.+.+- .+..-.+.|+. ....
T Consensus 67 AI~~aaG~~l~~ec~~~~~~---~~G~a~-------iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~-~a~~ 126 (199)
T 3kh6_A 67 AILEGAGQAVESECAVLAAQ---PHRDFI-------ITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLE-ECEQ 126 (199)
T ss_dssp HHHHHHCHHHHHHHHHHHTS---CCCSSE-------EEECTTSSSSEEEEEETTS---------CHHHHHHHHHH-HHHH
T ss_pred HHHHHhhHHHHHHHHHhCCC---CCCeEE-------EecCCCCCCCEEEEeCCCH---------HHHHHHHHHHH-HHHH
Confidence 67788889999999987421 123332 5788999999999987541 24455566666 5556
Q ss_pred CCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-----CeEEEEeccccc
Q 004319 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-----NARLVLVDLTQG 324 (761)
Q Consensus 274 ~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-----~i~~v~vD~~~~ 324 (761)
.+++|||||+||||+||||+++||++++++|++|+++.+ .++|+++|..++
T Consensus 127 ~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~~~~ 182 (199)
T 3kh6_A 127 RKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQPELL 182 (199)
T ss_dssp TTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCSSCSCCEEEEEESSTHHH
T ss_pred cCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHHH
Confidence 799999999999999999999999999999999999864 256666655443
No 85
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.10 E-value=7.2e-10 Score=112.87 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=76.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK--GKS 80 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~--g~~ 80 (761)
+|+|+|+|||||||+|+.|++.++ +.+++.|++ ++ +...........+..++.. |..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCe
Confidence 689999999999999999999998 677887655 21 1122233334556677777 899
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhccc
Q 004319 81 VFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
||+|+......++..+..+ ...+. .-.+|+|++|.+++.+|+.+|..
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 128 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRI 128 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccC
Confidence 9999987776666666443 22222 22589999999999999999974
No 86
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=99.08 E-value=1.8e-11 Score=126.21 Aligned_cols=125 Identities=9% Similarity=0.096 Sum_probs=90.3
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccc-c-ccccCCCCcccc
Q 004319 188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA-G-EEVKGTENPEVA 265 (761)
Q Consensus 188 Gc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 265 (761)
|+.+. +.+..+++.|++.+++.+. . ..|.+. .|.++++.|.+++|.|.|-|... . .....+..-.+.
T Consensus 91 gGV~~-AI~~aaG~~l~~ec~~~g~-~--~~G~a~-------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~ 159 (235)
T 2x47_A 91 GGVDG-CIHRAAGPLLTDECRTLQS-C--KTGKAK-------ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLS 159 (235)
T ss_dssp SHHHH-HHHHHHCHHHHHHHHTSCC-C--CBTCEE-------EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHhCHHHHHHHHHhCC-C--CCCceE-------EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHH
Confidence 44444 6788888999999987532 1 223332 57889999999999999887531 1 222234444556
Q ss_pred ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC----eEEEEeccccc
Q 004319 266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN----ARLVLVDLTQG 324 (761)
Q Consensus 266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~----i~~v~vD~~~~ 324 (761)
|+. .....+++|||||+||||+||||+++||++++++|++|++.++. +.|+.++..++
T Consensus 160 ~L~-~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~ 221 (235)
T 2x47_A 160 SLD-LLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDE 221 (235)
T ss_dssp HHH-HHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHH
T ss_pred HHH-HHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHH
Confidence 665 45557999999999999999999999999999999999987643 55555554443
No 87
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.03 E-value=1.9e-09 Score=110.75 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---g~ 79 (761)
-+-|.|+|||||||+|+.|++.++ +.+|+.+++ + +|...+.+.....+.++|.. ..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG--IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC--CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 467999999999999999999998 777887544 2 23344445555677777765 45
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
.||+|+.+.+..+...|.+. .... .+|+|++|.+++.+|+..|..+
T Consensus 88 g~ILDGfPRt~~Qa~~L~~~~~~~d---~VI~Ldvp~e~l~~Rl~~R~~~ 134 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKEAGVAID---YVLEIDVPFSEIIERMSGRRTH 134 (230)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCCS---EEEEECCCHHHHHHHHHTEEEE
T ss_pred CeEecCCCCcHHHHHHHHHhCCCcc---EEEEEeCCHHHHHHHHHcCCcc
Confidence 79999998988887776544 3333 4899999999999999999754
No 88
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.01 E-value=8.8e-10 Score=105.98 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=65.8
Q ss_pred CcEEEEcCcEEEEecCCCCCCceEEEEeCCC-CCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFD-GLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS 654 (761)
Q Consensus 576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~-hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS 654 (761)
..++++...++++.+. |.+..|+||||| + |+.++.||++++...|..+.....+.+++....++ +|+| .++++
T Consensus 18 ~~~~~e~p~~~v~l~~-~~~~~H~LVIPk-~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g---~N~~-~aGq~ 91 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIK-DANYPWLLLVPR-RPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDK---LNIA-ALGNL 91 (149)
T ss_dssp EEEEEECSSEEEEEES-CTTSCEEEEEEC-CTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE---EEEE-ECCSS
T ss_pred CEEEEEcCceEEEECC-CCCCCEEEEEec-ccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCe---EEEe-ecCCc
Confidence 3478888988888884 556779999999 6 89999999999876666655555555555444443 7887 78999
Q ss_pred ccceeeeeecC
Q 004319 655 MRQLHLHVISQ 665 (761)
Q Consensus 655 v~HLHlHVIs~ 665 (761)
|+|||+|||.+
T Consensus 92 V~HlH~HvIPR 102 (149)
T 3i4s_A 92 VPQLHVHIIAR 102 (149)
T ss_dssp CCSCCEEEEEE
T ss_pred CCEEEEEEECC
Confidence 99999999997
No 89
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.01 E-value=1.5e-09 Score=109.95 Aligned_cols=104 Identities=26% Similarity=0.365 Sum_probs=71.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHH---
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK--- 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~--- 76 (761)
.+.+|+|+|+|||||||+++.|++.++ +.+++.|++. ++...+.......+...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 81 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPD 81 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcc
Confidence 456899999999999999999999998 6778876541 2223333333333333332
Q ss_pred -CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 77 -~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+..+|+|++.....++..+... ...+ .+|+|++|.+++.+|+..|..
T Consensus 82 ~~~~~~vidg~~~~~~~~~~l~~~~~~~~---~vi~L~~~~~~~~~R~~~r~~ 131 (222)
T 1zak_A 82 AQENGWLLDGYPRSYSQAMALETLEIRPD---TFILLDVPDELLVERVVGRRL 131 (222)
T ss_dssp HHHTCEEEESCCCSHHHHHHHHTTTCCCS---EEEEEECCHHHHHHHHTTEEE
T ss_pred ccCCcEEEECCCCCHHHHHHHHHcCCCCC---EEEEEECCHHHHHHHHHcCCc
Confidence 24568889977766555544322 1222 489999999999999998864
No 90
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=98.99 E-value=5e-11 Score=116.80 Aligned_cols=118 Identities=11% Similarity=-0.001 Sum_probs=86.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCCC-CCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA 265 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (761)
.|+-+. +.+...++.|++.+++.-... .-..|... .|+|+ +.|.+++|.|.|-|+. ....+.+..-.+.
T Consensus 42 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~-------iT~g~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~ 111 (168)
T 3eti_A 42 VGGVAR-AIDVFTGGKLTKRSKEYLKSSKAIAPGNAV-------LFENV-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKA 111 (168)
T ss_dssp CSTTHH-HHHHHTTTHHHHHHHHHHTTSCCCCTTEEE-------EEEEE-ETTEEEEEEECCCTTS-TTHHHHHHHHHHH
T ss_pred CchHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCEE-------EecCC-CCccEEEEecCCCCCc-chHHHHHHHHHHH
Confidence 466665 788899999999999863221 11113332 57788 9999999999998854 2222334455555
Q ss_pred ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 004319 266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGS 325 (761)
Q Consensus 266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s 325 (761)
|+.. .+|||||+||||+||||+++||++++++|++ ..+.|++++..++.
T Consensus 112 ~L~~------~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~~~~ 160 (168)
T 3eti_A 112 IAKC------DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQERV 160 (168)
T ss_dssp HHTS------CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHHHHH
T ss_pred HHHh------cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHHHHH
Confidence 5551 3799999999999999999999999999998 56888887665544
No 91
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.96 E-value=2.5e-09 Score=104.39 Aligned_cols=143 Identities=24% Similarity=0.349 Sum_probs=108.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC------CCCCc----HHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSGT----KVQCLTSASSALKKGKSVFLDRCNL 88 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~------~~~~~----~~~~~~~~~~~L~~g~~VIID~tn~ 88 (761)
+..++.|+|++|||||||++.+... ...++.|.++. +.... .......+...+..|..+++|.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKP----TEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV 83 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCG----GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHccC----CeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 4579999999999999999976532 23456665521 11111 1223345566778899999999999
Q ss_pred CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC---CccCCceEEEEcC
Q 004319 89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP---KLSEGFSRITLCQ 164 (761)
Q Consensus 89 ~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P---~~~EgFd~V~vv~ 164 (761)
....++.++.+ +.......+++||-|...+-.|+.+|..+ .++++++.++...+... ...+|+..|++.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~------~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH 157 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR------QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILN 157 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC------CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeC
Confidence 99888888888 88888999999999999999999999864 67899998887764321 2367999999999
Q ss_pred ChhhHHH
Q 004319 165 NENDVQA 171 (761)
Q Consensus 165 ~~~ei~~ 171 (761)
+.++++.
T Consensus 158 ~~~~~~~ 164 (171)
T 4gp7_A 158 SPEEVEE 164 (171)
T ss_dssp SHHHHHH
T ss_pred CHHHhhh
Confidence 8877764
No 92
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=98.95 E-value=5.6e-11 Score=115.57 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=83.8
Q ss_pred CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCC
Q 004319 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (761)
Q Consensus 194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (761)
..+.++++.+++.+++.+. . ..|... .|.+++++|.+++|.+.|-|.. .+...++.-.+.|+. ....
T Consensus 36 aI~~~~G~~l~~~c~~~g~-~--~~G~a~-------it~~~~L~~~~Vih~vgp~~~~--~~~~~L~~~~~~~L~-~a~~ 102 (159)
T 2dx6_A 36 AILRKGGPSIQEECDRIGK-I--RVGEAA-------VTGAGNLPVRYVIHAAVLGDEP--ASLETVRKATKSALE-KAVE 102 (159)
T ss_dssp HHHHHHCTHHHHHHHHHCC-C--CTTCEE-------EEECTTSSSSEEEEEEEESSSC--CCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHhCHHHHHHHHhcCC-C--CCCcEE-------EecCCCCCCCEEEEEeCCCCCC--chHHHHHHHHHHHHH-HHHH
Confidence 5677777889999987542 1 223332 5778899999999999997752 222223333444444 4445
Q ss_pred CCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 004319 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQG 324 (761)
Q Consensus 274 ~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~ 324 (761)
.+++|||||+||||+||||++++++++++++++| ....++.|+.+|.+++
T Consensus 103 ~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~~~~~ 152 (159)
T 2dx6_A 103 LGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYREEDA 152 (159)
T ss_dssp TTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESSHHHH
T ss_pred cCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECCHHHH
Confidence 6899999999999999999999999999999999 3333466666655443
No 93
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.95 E-value=3.2e-09 Score=108.58 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=75.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC--
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK-- 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~-- 77 (761)
.+..|+|+|+|||||||+|+.|++.++ +.+++.|++. .+...........+..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 456899999999999999999999998 6778876541 12222233333445555543
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHh-CCCC-ceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 78 -GKSVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 78 -g~~VIID~tn~~~~~R~~~~~l-~~~~-~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
+..||+|+......++..+.++ ...+ ..-.+|+|++|.+++.+|+..|..+
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 146 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH 146 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 4679999977777666655443 2211 1235899999999999999999643
No 94
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.94 E-value=4.6e-09 Score=106.77 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=73.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC--
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK-- 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~-- 77 (761)
++.+|+|+|+|||||||+|+.|++.++ +.+++.|++. ++...........+.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 83 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE--LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLT 83 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS--SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC--CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence 457899999999999999999999998 6778875541 12222333333444455653
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+..||+|+......+...+..+...+ .+|+|++|.+++.+|+..|..
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~~~R~~~R~~ 130 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRAYQID---TVINLNVPFEVIKQRLTARWI 130 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTSCCC---EEEEEECCHHHHHHHHTCEEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHcCcC
Confidence 67899999877766554443332233 489999999999999998853
No 95
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.93 E-value=7.3e-09 Score=104.33 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHCC---C
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKKG---K 79 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~g---~ 79 (761)
.|+|+|+|||||||+|+.|++.++ +.+++.|++ ++ +...+.......+..++... .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 79 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN 79 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 489999999999999999999998 566887554 21 11222333345555666553 5
Q ss_pred cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.||+|+......+...+... ...+ .+|+|++|.+++.+|+.+|..
T Consensus 80 ~~i~dg~~~~~~~~~~l~~~~~~~d---~vi~l~~~~e~~~~R~~~R~~ 125 (214)
T 1e4v_A 80 GFLLDGFPRTIPQADAMKEAGINVD---YVLEFDVPDELIVDRIVGRRV 125 (214)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCCS---EEEEEECCHHHHHHHHHTEEE
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHCCcc
Confidence 79999977766665555333 2222 489999999999999998864
No 96
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.91 E-value=7.4e-09 Score=101.76 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=77.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC----cH---HHHH----HHHHHHHHCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----TK---VQCL----TSASSALKKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~----~~---~~~~----~~~~~~L~~g~~VIID 84 (761)
++.+|+|+|+|||||||+++.|+..++ ..+.+++.|.++..... .. .... ..+...+..|..||+|
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~d 91 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVICS 91 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 568999999999999999999988764 34567888877543211 11 1111 1222334677778889
Q ss_pred CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
+++.....|..+..+ ...+....+|||++|.+++.+|+..
T Consensus 92 ~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 92 FVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred CccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 988888888888777 5556678899999999999999754
No 97
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.91 E-value=2.2e-09 Score=107.53 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=78.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEEeccccc----CCCCCcHH-------
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTIN----KGKSGTKV------- 65 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~---------------------~~~~I~~D~i~----~~~~~~~~------- 65 (761)
..+.+|+|+|+|||||||+++.|++.++. .+..++.|.+. ++.+....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 45678999999999999999999988742 23333333331 11111000
Q ss_pred -HHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCC-ceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 66 -QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 66 -~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~-~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
.....+...+..|+.||+|... .....+.+. .. ....+|||+ +|.+++.+|+.+|.. ..++.+..
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~---~~~~~l~~~--~~~~~~~~i~l~~~s~e~l~~Rl~~R~~-------~~~~~i~~ 157 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNI---NGVKQLKES--KHIQDGIYIFVKPPSIDILLGRLKNRNT-------EKPEEINK 157 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCH---HHHHHHHHC--SSCSCCEEEEEECSCHHHHHHHHHTCTT-------SCHHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEECH---HHHHHHHHh--cCCCCeEEEEEcCCCHHHHHHHHHHcCC-------CCHHHHHH
Confidence 0013456677899999999722 122222222 21 134688998 899999999998864 23344444
Q ss_pred HHHhhhcCCC--ccCCceEEEEcC
Q 004319 143 RMLQKKELPK--LSEGFSRITLCQ 164 (761)
Q Consensus 143 r~~~~~e~P~--~~EgFd~V~vv~ 164 (761)
++.....+-. ..+.|+.+++.+
T Consensus 158 rl~~~~~~~~~~~~~~~d~vi~n~ 181 (204)
T 2qor_A 158 RMQELTREMDEADKVGFNYFIVND 181 (204)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHHHHhhhccCcEEEECc
Confidence 4444322111 345567665443
No 98
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=98.89 E-value=2.2e-10 Score=116.45 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=85.8
Q ss_pred CCCCCCCCcchhh----HHHHHHHHh----hCCCCCCCCCCcccCCCCCCCcccccccc---ccccccccc----ccccc
Q 004319 188 GSFGQKNPDAKIQ----LGIMKFLKK----VDAPSNTGSTASSTQDPVPPQITEEKNSC---LEGQEITSL----LSDAA 252 (761)
Q Consensus 188 Gc~~~~~~~~~~~----~~i~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~ 252 (761)
|+.+. +.+..++ +.+++.+++ .+... ...|.+. .|.+++++| .+++|.|.| -|+.
T Consensus 50 gGV~~-aI~~aaG~~~~~~l~~ec~~~~~~~g~~~-~~~G~a~-------iT~~~~L~~~g~k~VIH~vgP~~~~~~~~- 119 (211)
T 1vhu_A 50 GGVAY-AIAKACAGDAGLYTEISKKAMREQFGRDY-IDHGEVV-------VTPAMNLEERGIKYVFHTVGPICSGMWSE- 119 (211)
T ss_dssp SHHHH-HHHHHHHSSHHHHHHHHHHHHHHHHSSSC-CCTTCCE-------EEECGGGGGGTCCEEEEEECCCCTTCCCH-
T ss_pred cHHHH-HHHHHhCCCchHHHHHHHHHHHHHcCCCc-ccCCcEE-------EEECCCCCccCcCEEEEecCCccccccCc-
Confidence 44444 5667777 888888877 33210 1113332 578899999 999999999 6642
Q ss_pred cccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC--CeEEEEeccccc
Q 004319 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--NARLVLVDLTQG 324 (761)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--~i~~v~vD~~~~ 324 (761)
.....+..-.+.|+. .....+++|||||+||||+||||+++||++++++|++|++ .+ .+.|+.+|..++
T Consensus 120 -~~~~~L~~~y~~~L~-~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~-~~l~~V~~v~~~~~~~ 190 (211)
T 1vhu_A 120 -ELKEKLYKAFLGPLE-KAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKG-SAVKEVALVIYDRKSA 190 (211)
T ss_dssp -HHHHHHHHHHHHHHH-HHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCCC-SSCCEEEEEESSHHHH
T ss_pred -chHHHHHHHHHHHHH-HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEEECCHHHH
Confidence 222334444555555 4445689999999999999999999999999999999994 33 345555554443
No 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=6.4e-09 Score=103.65 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=79.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----c---------HHHHHHHHHHHHHCCCcEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----T---------KVQCLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----~---------~~~~~~~~~~~L~~g~~VIID~ 85 (761)
+..+|+|+|+|||||||+++.|++.++ +.+++.|.+.....+ . .......+...+..+..+||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~--~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ 101 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN--VPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVIST 101 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEEC
Confidence 345899999999999999999999998 556888776321100 0 0111133344455677888884
Q ss_pred C---CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHH-hcccccCCCCCCChH---HHHHHHHhhhcCCCccCCce
Q 004319 86 C---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHEGNLQGGKAA---AVVNRMLQKKELPKLSEGFS 158 (761)
Q Consensus 86 t---n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~-~R~~~~~~~~~~v~~---~vI~r~~~~~e~P~~~EgFd 158 (761)
. ......+..+.. . ..+|||++|.+++.+|+. .|..++. .....++ +.+.+++.... |.+.+ .+
T Consensus 102 ggg~~~~~~~~~~l~~---~---~~vi~L~~~~e~l~~Rl~~~~~~Rp~-~~~~~~~~~~~~i~~~~~~r~-~~y~~-ad 172 (199)
T 3vaa_A 102 GGGAPCFYDNMEFMNR---T---GKTVFLNVHPDVLFRRLRIAKQQRPI-LQGKEDDELMDFIIQALEKRA-PFYTQ-AQ 172 (199)
T ss_dssp CTTGGGSTTHHHHHHH---H---SEEEEEECCHHHHHHHHHHTGGGCGG-GTTCCHHHHHHHHHHHHHHHH-HHHTT-SS
T ss_pred CCcEEccHHHHHHHHc---C---CEEEEEECCHHHHHHHHhcCCCCCCC-cCCCChhhHHHHHHHHHHHHH-HHHhh-CC
Confidence 3 333333333322 2 248999999999999998 5544321 2234443 33444444333 22223 45
Q ss_pred EEEEcC
Q 004319 159 RITLCQ 164 (761)
Q Consensus 159 ~V~vv~ 164 (761)
.++..+
T Consensus 173 ~~Idt~ 178 (199)
T 3vaa_A 173 YIFNAD 178 (199)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 554444
No 100
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=98.88 E-value=4.5e-10 Score=110.57 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=83.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVAS 266 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (761)
-|+-+. +.+...++.|++.+++.-... |... .-.|+|+++.|.+++|.|.|-|+.. ...+.+..-.+.|
T Consensus 50 ggGV~~-AI~~aaG~~l~~ec~~~~~~~----g~~~-----a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~ 118 (176)
T 3ejf_A 50 GSGVAK-AIADFCGLDFVEYCEDYVKKH----GPQQ-----RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNV 118 (176)
T ss_dssp CSHHHH-HHHHHHCHHHHHHHHHHHHHH----CCCS-----EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTT
T ss_pred CchHHH-HHHHHhhHHHHHHHHHHHHhc----CCCC-----eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHH
Confidence 355555 788999999999998862111 0000 1146788888899999999988541 1222233344444
Q ss_pred cccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Q 004319 267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQ 323 (761)
Q Consensus 267 ~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~ 323 (761)
+. .+++|||||+||||+||||+++||++++++|++ ..+++++++.+.
T Consensus 119 L~-----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D~ 165 (176)
T 3ejf_A 119 LV-----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLSQ 165 (176)
T ss_dssp CC-----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESCH
T ss_pred HH-----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCCH
Confidence 44 799999999999999999999999999999983 347888766554
No 101
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.88 E-value=4.6e-09 Score=109.31 Aligned_cols=128 Identities=12% Similarity=0.173 Sum_probs=84.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCC----------------------------CCcHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------------SGTKVQCLTS 70 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~----------------------------~~~~~~~~~~ 70 (761)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. .+. ........+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~--~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG--WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC--CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC--CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence 4799999999999999999999998 5567777642 111 0111222222
Q ss_pred HH---HHHHCCCcEEEeCCCCCHHHHHHHHHhCC----CCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 71 AS---SALKKGKSVFLDRCNLEREQRTDFVKLGG----PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 71 ~~---~~L~~g~~VIID~tn~~~~~R~~~~~l~~----~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
+. +.+..|+.+|+++... ...+.++ .. .++.+.++||++|. +++.+|+.+|....-. ...++..++.
T Consensus 80 ~~~~i~~~~~g~~vIl~gg~~--~~~~~~~--~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~-~~~~~~~~l~ 154 (253)
T 2ze6_A 80 LIFEVDWRKSEEGLILEGGSI--SLLNCMA--KSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFA-IREDRPSLLE 154 (253)
T ss_dssp HHHHHHTTTTSSEEEEEECCH--HHHHHHH--HCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCSSSCCHHH
T ss_pred HHHHHHHHhCCCCeEEeccHH--HHHHHHH--hcccccccCceEEEEecchhHHHHHHHHHHHHHHHHh-cCcccchHHH
Confidence 22 3346788888886432 1222222 33 56778899999997 9999999999764100 1134557788
Q ss_pred HHHhhhcCCCccC
Q 004319 143 RMLQKKELPKLSE 155 (761)
Q Consensus 143 r~~~~~e~P~~~E 155 (761)
.+...++.|...+
T Consensus 155 e~~~~~~~p~~~~ 167 (253)
T 2ze6_A 155 ELAELWNYPAARP 167 (253)
T ss_dssp HHHHHHTSTTHHH
T ss_pred HHHHhcCCcchHH
Confidence 8888888887553
No 102
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.86 E-value=1.2e-08 Score=118.94 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=81.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCC----c---HHHH----HHHHHHHHHCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----T---KVQC----LTSASSALKKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~----~---~~~~----~~~~~~~L~~g~~VIID 84 (761)
++.+|+|+|+|||||||+|+.|++.+ +..+..++.|.++.+... + +.+. .+.+...+..|..||.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d 130 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS 130 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 67899999999999999999999988 777777888888653321 1 1121 22334456788888888
Q ss_pred CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~ 124 (761)
........|..+.++ ...+..+.+|||++|.++|.+|+.+
T Consensus 131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 666666778888888 7777788999999999999999764
No 103
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=98.86 E-value=5.3e-10 Score=110.91 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=82.8
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccc
Q 004319 188 GSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEV 264 (761)
Q Consensus 188 Gc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (761)
|+-+. +.+..+++.|++.+++.- .+..+ |.+. .|.++++ +++++|.|.|-|..+ + .++..+
T Consensus 53 gGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~--G~a~-------iT~~~~L-~~~VIH~vgP~~~~~-~----~~~~L~ 116 (182)
T 2acf_A 53 GGVAG-ALNKATNGAMQKESDDYIKLNGPLTV--GGSC-------LLSGHNL-AKKCLHVVGPNLNAG-E----DIQLLK 116 (182)
T ss_dssp SHHHH-HHHHHTTTHHHHHHHHHHHHHCCCCT--TCEE-------EEECTTT-CSEEEEECCCCGGGT-C----CTTHHH
T ss_pred chHHH-HHHHHhCHHHHHHHHHHHHHcCCCCC--CcEE-------EeeCCCC-CceEEEECCCCCCCC-c----hHHHHH
Confidence 44444 677778888988887641 22222 3332 5677787 679999999887642 1 355666
Q ss_pred cccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccchhh
Q 004319 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKIL 328 (761)
Q Consensus 265 ~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s~~l 328 (761)
.|... +.+++|||||+||||+||||+++|++++++++++ .+.|+++|.+.+...+
T Consensus 117 ~~y~~---~~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~~v~~d~~~y~~~l 171 (182)
T 2acf_A 117 AAYEN---FNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKALYEQVV 171 (182)
T ss_dssp HHHHG---GGGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHHHHHHH
T ss_pred HHHHH---hcCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEEEEECCHHHHHHHH
Confidence 66653 2689999999999999999999999999999986 5777777665444433
No 104
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.83 E-value=1.4e-08 Score=99.50 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc-------------CCCCCcHHH-----------HHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN-------------KGKSGTKVQ-----------CLTSASSA 74 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~-------------~~~~~~~~~-----------~~~~~~~~ 74 (761)
+|+|+|+|||||||+++.|++.+ + +.+++.|... ++....... +...+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999987 6 4455554321 222211100 01233455
Q ss_pred HHCCCcEEEeCC------------CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 004319 75 LKKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (761)
Q Consensus 75 L~~g~~VIID~t------------n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI 141 (761)
+..|..+|+|.. .........+..+ ......-.+|+|++|.+++.+|+.+|... + .++..
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~------~-~~~~~ 152 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF------E-NKEFL 152 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCC------C-CHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCcc------c-hHHHH
Confidence 678889999952 2222232222222 21112235899999999999999865331 2 45555
Q ss_pred HHHHhhhcCCCccCCceEEEEcCChhhHHHHH
Q 004319 142 NRMLQKKELPKLSEGFSRITLCQNENDVQAAL 173 (761)
Q Consensus 142 ~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l 173 (761)
.++...++.+.... +.++++++..+++++.
T Consensus 153 ~~~~~~~~~~~~~~--~~~~~Id~~~~~~~~~ 182 (195)
T 2pbr_A 153 EKVRKGFLELAKEE--ENVVVIDASGEEEEVF 182 (195)
T ss_dssp HHHHHHHHHHHHHS--TTEEEEETTSCHHHHH
T ss_pred HHHHHHHHHHHhhC--CCEEEEECCCCHHHHH
Confidence 55544444332111 2344555544444443
No 105
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=98.83 E-value=7.8e-10 Score=116.70 Aligned_cols=116 Identities=8% Similarity=0.036 Sum_probs=80.2
Q ss_pred CCCCCCCCCcchhh-HHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccc----------cccccccccccccccccccc-
Q 004319 187 HGSFGQKNPDAKIQ-LGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEE----------KNSCLEGQEITSLLSDAAGE- 254 (761)
Q Consensus 187 hGc~~~~~~~~~~~-~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~- 254 (761)
.|+++. +.+.+++ ..+++.+++.-....-..|... .|.++ ++.|.+++|.|.+-|.....
T Consensus 86 gGGVd~-AI~raaGg~~l~~ec~~~~~~g~~~~G~a~-------iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~ 157 (284)
T 1njr_A 86 GGGFDK-ALYNYFGGKPFETWFRNQLGGRYHTVGSAT-------VVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIF 157 (284)
T ss_dssp CSSHHH-HHHHHHTSHHHHHHHHHHTTTSCCCTTCCE-------EEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSC
T ss_pred CchHHH-HHHHhhCcHHHHHHHHHHHhcCCCCCCeEE-------EEECCcccccccchhcCCCCEEEEeCCCccCCCCCc
Confidence 577776 6666654 6678888775322111112221 34455 99999999999987753210
Q ss_pred --------cccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004319 255 --------EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (761)
Q Consensus 255 --------~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~ 312 (761)
....+.+-++.|+. .+ ..+++|||||+||||+||||+++||++++++|++|++..+
T Consensus 158 d~~~p~~~~~~~L~~~~~~~L~-~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~~~ 221 (284)
T 1njr_A 158 NPQNPLKTGFEPVFNAMWNALM-HS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDH 221 (284)
T ss_dssp CTTCHHHHTHHHHHHHHHHHHH-TS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccccccccHHHHHHHHHHHHHH-HH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 01112333445555 44 6899999999999999999999999999999999998765
No 106
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.81 E-value=2.2e-08 Score=103.68 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=66.4
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCC--------eEEEecccccCCCCC-------------------cHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTINKGKSG-------------------TKVQCL 68 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~--------~~~I~~D~i~~~~~~-------------------~~~~~~ 68 (761)
...++.+|.|+|+|||||||+|+.|++.++.. ..+++.|.+...... +.....
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~ 97 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIL 97 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHH
Confidence 44567899999999999999999999988833 347898888642110 011112
Q ss_pred HHHHHHHH------------------------CCCcEEEeCCCCC-HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHH
Q 004319 69 TSASSALK------------------------KGKSVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123 (761)
Q Consensus 69 ~~~~~~L~------------------------~g~~VIID~tn~~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~ 123 (761)
+.+..... ....||+|+..+. ... +.+. .+ .+|||++|.+++.+|+.
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~---~~~~--~d---~vi~l~~~~e~~~~R~~ 169 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQE---VRDL--FQ---MKLFVDTDADTRLSRRV 169 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHH---HHHH--CS---EEEEEECCHHHHHHHHH
T ss_pred HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHH---HHHh--cC---eeEEEeCCHHHHHHHHH
Confidence 22222221 2356899996653 222 2222 22 28999999999999999
Q ss_pred hcc
Q 004319 124 KRI 126 (761)
Q Consensus 124 ~R~ 126 (761)
+|.
T Consensus 170 ~R~ 172 (252)
T 1uj2_A 170 LRD 172 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 107
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.80 E-value=4e-08 Score=97.89 Aligned_cols=105 Identities=21% Similarity=0.227 Sum_probs=77.0
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCC----Cc---HHH----HHHHHHHHHHCCCcE
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS----GT---KVQ----CLTSASSALKKGKSV 81 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~----~~---~~~----~~~~~~~~L~~g~~V 81 (761)
...++.+|+|+|++||||||+++.|+..+ +....+++.|.++.... .. ... ....+......+..+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIIC 100 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceE
Confidence 34567899999999999999999999887 53334788888753211 11 111 113334445678889
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|++..+.....|..+..+ . +..+..|||++|.+++.+|+
T Consensus 101 i~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 101 IASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EEECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred EEecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence 999989988999888777 4 34567899999999999997
No 108
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.80 E-value=2.5e-08 Score=100.22 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=76.4
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccCCCC----Cc---HHH----HHHHHHHHHHCCCcE
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS----GT---KVQ----CLTSASSALKKGKSV 81 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~~~~----~~---~~~----~~~~~~~~L~~g~~V 81 (761)
..++.+|+|+|+|||||||+++.|++.++ ..+.+++.|.++.... .. +.. +...+...+..|..|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~V 101 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA 101 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 34568999999999999999999988654 4577888888764321 11 111 122344667889999
Q ss_pred EEeCCCCCHHHHHHHHHh-C------CCCceEEEEEEeCCHHHHHHHH
Q 004319 82 FLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~------~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|+|........|..+..+ . ..+.+..+|+|++|.+++.+|+
T Consensus 102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 999665555677777666 4 3346678999999999999994
No 109
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.79 E-value=1.3e-08 Score=99.65 Aligned_cols=119 Identities=19% Similarity=0.213 Sum_probs=72.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH------------HHH-HHHHHHHHHCCCcEEEeCC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQC-LTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~------------~~~-~~~~~~~L~~g~~VIID~t 86 (761)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ .. ... ...+...+.....||.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG--VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC--CCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence 4699999999999999999999998 667898887421111 00 011 1223333344444444442
Q ss_pred --CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319 87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 87 --n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e 149 (761)
.+....|..+ + .+ .+|+|++|.+++.+|+.+|..++. .......+.+..++....
T Consensus 81 ~~v~~~~~~~~l---~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~-~~~~~~~~~i~~~~~~r~ 137 (184)
T 2iyv_A 81 GAVTSPGVRAAL---A-GH---TVVYLEISAAEGVRRTGGNTVRPL-LAGPDRAEKYRALMAKRA 137 (184)
T ss_dssp TGGGSHHHHHHH---T-TS---CEEEEECCHHHHHHHTTCCCCCSS-TTSCCHHHHHHHHHHHHH
T ss_pred cEEcCHHHHHHH---c-CC---eEEEEeCCHHHHHHHHhCCCCCCC-ccCCCHHHHHHHHHHHHH
Confidence 2344444433 3 33 388999999999999998864321 122335566776665433
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.78 E-value=1.4e-08 Score=99.34 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=72.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----cH---------HHHHHHHHHHHHCCCcEEEeC-
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----TK---------VQCLTSASSALKKGKSVFLDR- 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----~~---------~~~~~~~~~~L~~g~~VIID~- 85 (761)
+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ .. ......+...+.....+||+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g 82 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATG 82 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecC
Confidence 45789999999999999999999998 667888887432111 00 011122333343334445544
Q ss_pred --CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHH--HhcccccCCCCCCChHHHHHHHHhhhc
Q 004319 86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS--VKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (761)
Q Consensus 86 --tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~--~~R~~~~~~~~~~v~~~vI~r~~~~~e 149 (761)
..+....|..+... ..+|||++|.+++.+|+ ..|..++ ........+.+..++...+
T Consensus 83 g~~~~~~~~~~~l~~~------~~vi~L~~~~e~l~~Rl~~~~~~~rp-~~~~~~~~~~l~~~~~~r~ 143 (185)
T 3trf_A 83 GGVVLDEKNRQQISET------GVVIYLTASIDTQLKRIGQKGEMRRP-LFIKNNSKEKLQQLNEIRK 143 (185)
T ss_dssp TTGGGSHHHHHHHHHH------EEEEEEECCHHHHHHHHHCCTTCSSC-CCCCHHHHHHHHHHHHHHH
T ss_pred CceecCHHHHHHHHhC------CcEEEEECCHHHHHHHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHH
Confidence 44555665544322 25899999999999999 4443321 1111112455666665544
No 111
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=98.78 E-value=2e-10 Score=112.46 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=64.5
Q ss_pred cccccccccccccccccc--ccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-Ce
Q 004319 238 CLEGQEITSLLSDAAGEE--VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NA 314 (761)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-~i 314 (761)
|.+++|.|.|-|..+... ...+..-.+.|+. .....+++|||||+||||+||||+++||+ +++++.+|+++.. ++
T Consensus 70 ~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~-~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V 147 (168)
T 3gpg_A 70 TYPVIHAVGPNFSNYSESEGDRELAAAYREVAK-EVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADV 147 (168)
T ss_dssp TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEE
T ss_pred CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHH-HHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEE
Confidence 899999999988754311 2234445555665 45567999999999999999999999999 8999999988753 46
Q ss_pred EEEEecccccc
Q 004319 315 RLVLVDLTQGS 325 (761)
Q Consensus 315 ~~v~vD~~~~s 325 (761)
.|+++|.+++.
T Consensus 148 ~fv~f~~~~~~ 158 (168)
T 3gpg_A 148 VIYCRDKEWEK 158 (168)
T ss_dssp EEEESCHHHHH
T ss_pred EEEECCHHHHH
Confidence 77766665544
No 112
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.78 E-value=4.3e-08 Score=110.94 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=78.6
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC---C---------CCc-----HHH----HHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---K---------SGT-----KVQ----CLTSA 71 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~---~---------~~~-----~~~----~~~~~ 71 (761)
...++.+|+|+|+|||||||++++|++.++ .+...++.|.++.. . .+. +.. ++..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999998764 34555665544311 0 011 011 11222
Q ss_pred HHHH--HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319 72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (761)
Q Consensus 72 ~~~L--~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~ 144 (761)
...+ ..|..+|+|.+|....+|..|++. +..++.+..+.+.++ .+++.+|...|...........+++++..+
T Consensus 115 ~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~ 191 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF 191 (469)
T ss_dssp HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHH
Confidence 4445 457789999999999999999988 666765555555455 566666665444322222223345554444
No 113
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.75 E-value=1.6e-08 Score=100.75 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeE----EE-----------------ecccc----cCCCCCcHHH--------HH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWA----RI-----------------CQDTI----NKGKSGTKVQ--------CL 68 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~----~I-----------------~~D~i----~~~~~~~~~~--------~~ 68 (761)
+|+|+||+||||||++++|.+.++..+. +. +.+.+ .++.+..+.+ -.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 4899999999999999999988642221 11 11111 1111111100 11
Q ss_pred HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (761)
Q Consensus 69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~ 146 (761)
..+...+..|+.+|+|. +++....+ ...+.....||+ .++.+++.+|+.+|.. +..+++-.|+..
T Consensus 83 ~~v~~~l~~g~~vil~i------d~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-------e~~e~i~~Rl~~ 149 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA 149 (186)
T ss_dssp HHHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-------SCHHHHHHHHHH
T ss_pred ceeeehhhCCCEEEecC------CHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHHHH
Confidence 45677888999999998 56666666 444544444555 5567999999999986 344555555544
Q ss_pred hhcCCCc--cCCceEEEEcCChhh
Q 004319 147 KKELPKL--SEGFSRITLCQNEND 168 (761)
Q Consensus 147 ~~e~P~~--~EgFd~V~vv~~~~e 168 (761)
...+-.. ...||.|++.++.++
T Consensus 150 a~~e~~~~~~~~fD~vIvNddle~ 173 (186)
T 1ex7_A 150 AQAELAYAETGAHDKVIVNDDLDK 173 (186)
T ss_dssp HHHHHHHHTTTCSSEEEECSSHHH
T ss_pred HHHHHhhccccCCcEEEECcCHHH
Confidence 3221111 234898877665433
No 114
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=98.74 E-value=9.4e-10 Score=109.71 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=81.6
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcc
Q 004319 187 HGSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPE 263 (761)
Q Consensus 187 hGc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (761)
.|+-+. +.+..+++.|++.+++.- .+..+ |... .|.++++ +++|.|.|-|+. ...+.+..-.
T Consensus 70 ggGV~~-AI~~aaG~~l~~ec~~l~~~~g~~~~--G~a~-------iT~~~~L---~VIHtVGP~~~~--~~~~~L~~~y 134 (193)
T 3ejg_A 70 GGGLAK-ALDVYTKGKLQRLSKEHIGLAGKVKV--GTGV-------MVECDSL---RIFNVVGPRKGK--HERDLLIKAY 134 (193)
T ss_dssp CSHHHH-HHHHHTTTHHHHHHHHHHHHHCSCCT--TCEE-------EEEETTE---EEEEEECCCSST--THHHHHHHHH
T ss_pred CchHHH-HHHHHhhHHHHHHHHHHHHHcCCCCC--CCEE-------EecCCCe---eEEEecCCCCCc--hHHHHHHHHH
Confidence 455555 688888999999998651 12222 3332 5677777 999999998853 2333345555
Q ss_pred ccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 004319 264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGS 325 (761)
Q Consensus 264 ~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s 325 (761)
+.|+.. .+|||||+||||+||||+++||++++++|+++ .++|++++..++.
T Consensus 135 ~~~L~~------~~SIAfPaIstGi~G~P~~~aa~ial~~v~~~-----~V~fv~f~~~~~~ 185 (193)
T 3ejg_A 135 NTINNE------QGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----EVKVFVYTDTEVC 185 (193)
T ss_dssp HHHHHS------SSCEEECCTTCGGGCCCHHHHHHHHHHHCCSS-----CEEEEECSHHHHH
T ss_pred HHHHHh------cCceeecccccCCCCCCHHHHHHHHHHHHhcC-----eEEEEEcCHHHHH
Confidence 556651 37999999999999999999999999999983 6888887665544
No 115
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.72 E-value=3.2e-08 Score=97.36 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=73.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc-------------cCCCCCcHHHHH----------HHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI-------------NKGKSGTKVQCL----------TSASSAL 75 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i-------------~~~~~~~~~~~~----------~~~~~~L 75 (761)
+|+|.|++||||||+++.|++.+ +..+ +..+.- .++......... ..+..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l 79 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV--ILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E--EEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999988 7433 432221 112222111110 1133345
Q ss_pred HCCCcEEEeCC------------CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 76 KKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 76 ~~g~~VIID~t------------n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
..|..||+|.. +........+..+ ......-.+|+|++|.+++.+|+.+|... +. .+...
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~------~~-~~~~~ 152 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRF------EK-REFLE 152 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCC------CC-HHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcc------cH-HHHHH
Confidence 67888999953 2334444443333 21122334889999999999999999331 12 35666
Q ss_pred HHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319 143 RMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 143 r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~ 174 (761)
++...++.....+.. .++++++..+++++..
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~Id~~~~~e~~~~ 183 (197)
T 2z0h_A 153 RVREGYLVLAREHPE-RIVVLDGKRSIEEIHR 183 (197)
T ss_dssp HHHHHHHHHHHHCTT-TEEEEETTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHH
Confidence 655544322211111 2344555455554443
No 116
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.69 E-value=1.6e-08 Score=100.94 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=63.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEecc------------cccCCCCCcH---HHHH--------HHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQD------------TINKGKSGTK---VQCL--------TSA 71 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D------------~i~~~~~~~~---~~~~--------~~~ 71 (761)
.++.+|+|+|+|||||||+++.|++.++. ....+... .+.++...+. ...+ ..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEI 87 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999988652 12111110 0111111111 0111 134
Q ss_pred HHHHHCCCcEEEeCCCCCH----HHH----HHHHH-h-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 72 SSALKKGKSVFLDRCNLER----EQR----TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn~~~----~~R----~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
...+..|..||+|++.... ..+ ..|+. + ......-.+|+|++|.+++.+|+.+|
T Consensus 88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 5566778899999865421 111 23332 2 22122335899999999999998765
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.68 E-value=2.2e-07 Score=91.23 Aligned_cols=106 Identities=22% Similarity=0.225 Sum_probs=72.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC----CCCCcH----------HHHHHHHHHHHHCCCcEEEeC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----GKSGTK----------VQCLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~----~~~~~~----------~~~~~~~~~~L~~g~~VIID~ 85 (761)
..+++|+|+|||||||+++.|+...+ ...+++.|.+.. +....+ +.+...+...+..+..+|+|.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence 35899999999999999999987654 236788777642 111111 111123344456777899998
Q ss_pred CCCCHHHHHHHHHh-C--CCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 86 CNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 86 tn~~~~~R~~~~~l-~--~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
. .....+..+.++ + ..+..+.+++|++|.+++.+|...|..
T Consensus 81 ~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 81 I-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp C-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred c-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 5 455555555554 3 344467778899999999999998864
No 118
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=98.67 E-value=1.2e-09 Score=106.94 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=61.2
Q ss_pred ccccccccccccccccc--cccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC---
Q 004319 238 CLEGQEITSLLSDAAGE--EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--- 312 (761)
Q Consensus 238 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--- 312 (761)
|.+++|.|.|-|..+.. ....+..-.+.|+. .....+++|||||+||||+||||++++++++ .+|++..+
T Consensus 64 ~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i----~~~l~~~~~~~ 138 (168)
T 3gqe_A 64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAK-IVNDNNYKSVAIPLLSTGIFSGNKDRLTQSL----NHLLTALDTTD 138 (168)
T ss_dssp TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHH-HHHHTTCSEEEEECTTSSTTSCSSCCHHHHH----HHHHHHHTTSC
T ss_pred CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHH-HHHHcCCCEEEECCcccCCCCCCHHHHHHHH----HHHHHHCCCCC
Confidence 89999999988875331 12234445556665 4556799999999999999999999999954 44444433
Q ss_pred -CeEEEEecccccchhh
Q 004319 313 -NARLVLVDLTQGSKIL 328 (761)
Q Consensus 313 -~i~~v~vD~~~~s~~l 328 (761)
++.|+++|.+.+..+.
T Consensus 139 ~~V~iv~fd~~~~~~~~ 155 (168)
T 3gqe_A 139 ADVAIYCRDKKWEMTLK 155 (168)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred CeEEEEEcCHHHHHHHH
Confidence 3677777776655444
No 119
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.66 E-value=1.6e-07 Score=91.60 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=68.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCC-----C--cHHHHHHH---HHHHH-HCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS-----G--TKVQCLTS---ASSAL-KKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~-----~--~~~~~~~~---~~~~L-~~g~~VIID 84 (761)
+..+|+|+|++||||||+++.|+..+ +.++..++.|.++.... . .....+.. ....+ ..+..++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS 83 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 45689999999999999999999876 76676678777754211 1 11122211 12223 455433334
Q ss_pred CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
.......+|..+..+ +..+....+|||++|.+++.+|+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 84 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 443444445555555 44566678899999999999998654
No 120
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.66 E-value=2.5e-08 Score=97.32 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=64.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CC----CCcHHHHHHHHHHHHHCCCcEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GK----SGTKVQCLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~----~~~~~~~~~~~~~~L~~g~~VIID~ 85 (761)
++.+|+|+|+|||||||+++.|++.++ +.+++.|.+.. .. ..........+...+..| .+|+|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~vv~~ 86 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREG-GVIVDY 86 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHC-CEEEEC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcC-CEEEEe
Confidence 345789999999999999999999998 66788776521 00 112333445555666666 455676
Q ss_pred CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+...- .. .....+|||++|.+++.+|+.+|..
T Consensus 87 ~~~~~~--------~~-~~~~~vi~L~~~~e~l~~R~~~r~~ 119 (180)
T 3iij_A 87 HGCDFF--------PE-RWFHIVFVLRTDTNVLYERLETRGY 119 (180)
T ss_dssp SCCTTS--------CG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred chhhhc--------ch-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence 432110 10 0112489999999999999999963
No 121
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.66 E-value=2e-07 Score=92.37 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=74.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------CC---CCcH---HHHH----------------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------GK---SGTK---VQCL---------------- 68 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~~---~~~~---~~~~---------------- 68 (761)
+..++.|+|++||||||+++.|+..++ ...++...+.. +. .... ....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY 83 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence 346899999999999999999998764 22333222110 00 0000 0000
Q ss_pred ----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 69 ----TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 69 ----~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
..+.+.+..|..+|+|. .+..+..+ ..... ...|++ .+|.+++.+|+.+|... ..+.+..
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~------~~~~~~~~~~~~~~-~~~v~~~~~~~e~l~~Rl~~R~~~-------~~~~i~~ 149 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEI------DWQGARQIRELFPP-ALSIFILPPSIEALRERLIKRRQD-------DTAIIEQ 149 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHCTT-CEEEEEECSCHHHHHHHHHTCTTS-------CSSTHHH
T ss_pred cchHHHHHHHHHcCCeEEEEE------CHHHHHHHHHhCCC-cEEEEEECcCHHHHHHHHHHhCCC-------CHHHHHH
Confidence 35667788999999996 22223333 22222 234444 45699999999999753 2233333
Q ss_pred HHHhhhcCCCccCCceEEEEcCChhh
Q 004319 143 RMLQKKELPKLSEGFSRITLCQNEND 168 (761)
Q Consensus 143 r~~~~~e~P~~~EgFd~V~vv~~~~e 168 (761)
++............++.|++.++.++
T Consensus 150 rl~~~~~~~~~~~~~d~vi~n~~~~~ 175 (205)
T 3tr0_A 150 RLALAREEMAHYKEFDYLVVNDNFDQ 175 (205)
T ss_dssp HHHHHHHHHTTGGGCSEEEECSSHHH
T ss_pred HHHHHHHHHhcccCCCEEEECCCHHH
Confidence 33333222222355777776554333
No 122
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=7.4e-09 Score=104.20 Aligned_cols=136 Identities=16% Similarity=0.196 Sum_probs=71.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEEeccccc----CCCCCcHHH------
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTIN----KGKSGTKVQ------ 66 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~---------------------~~I~~D~i~----~~~~~~~~~------ 66 (761)
.+..+|+|+||+||||||+++.|+..++..+ ..++.+.+. .+....+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 3457999999999999999999998764211 111111110 000000000
Q ss_pred --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeC-CHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
....+.+.+..|+.+|+|. ++.....+ ..+... .+|++.+ +.+++.+|+.+|.. +.++++..
T Consensus 86 g~~~~~i~~~l~~g~~vild~------~~~g~~~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~-------~~~e~i~~ 151 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEI------EVQGAMQVRKAMPEG-IFIFLTPPDLSELKNRIIGRGT-------ESMEVVEE 151 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEEC------CHHHHHHHHHHCTTS-EEEEEECTTTTTSSCC--------------CCHHHHH
T ss_pred CCcHHHHHHHHHcCCeEEEEe------eHHHHHHHHHhCCCe-EEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHH
Confidence 0134677889999999998 33333333 222222 3455554 48999999999975 23355555
Q ss_pred HHHhhhcCCCccCCceEEEEcCChh
Q 004319 143 RMLQKKELPKLSEGFSRITLCQNEN 167 (761)
Q Consensus 143 r~~~~~e~P~~~EgFd~V~vv~~~~ 167 (761)
++......-.....||.+++.++.+
T Consensus 152 Rl~~~~~e~~~~~~~d~vivN~~~~ 176 (208)
T 3tau_A 152 RMETAKKEIEMMASYDYAVVNDVVA 176 (208)
T ss_dssp HHHHHHHHHHHGGGSSEEEECSSHH
T ss_pred HHHHHHHHHHhhccCCEEEECcCHH
Confidence 5544332112234578777665433
No 123
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.64 E-value=3.5e-07 Score=93.73 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=84.4
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEec-----------ccccCCC-CCcHHH-HHH----------HH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-----------DTINKGK-SGTKVQ-CLT----------SA 71 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~-----------D~i~~~~-~~~~~~-~~~----------~~ 71 (761)
..+..+|++.|+|||||||+++.|++.++. .+..... +.+.++. ...... .+. .+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i 102 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKV 102 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999998752 2221110 1111222 122211 111 12
Q ss_pred HHHHHCCCcEEEe----------CC--CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChH
Q 004319 72 SSALKKGKSVFLD----------RC--NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAA 138 (761)
Q Consensus 72 ~~~L~~g~~VIID----------~t--n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~ 138 (761)
..++..|..||+| +. ++.......+..+ .....+-.+|+|++|.+++.+|+.+|..... +......
T Consensus 103 ~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d-r~e~~~~ 181 (229)
T 4eaq_A 103 IPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN-RLDQEDL 181 (229)
T ss_dssp HHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC------CCCHHHH
T ss_pred HHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc-chhhhhH
Confidence 3556789999999 43 4555554444444 2222334588999999999999999864311 1111234
Q ss_pred HHHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319 139 AVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 139 ~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~ 174 (761)
+...+....++.....+. ..+++++...+++++..
T Consensus 182 ~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eev~~ 216 (229)
T 4eaq_A 182 KFHEKVIEGYQEIIHNES-QRFKSVNADQPLENVVE 216 (229)
T ss_dssp HHHHHHHHHHHHHTTTCT-TTEEEEETTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHH
Confidence 444444444432221111 23555565555554443
No 124
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.62 E-value=2e-07 Score=92.86 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=59.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec--------ccc----cCCC-CCcHHH-H---------HHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--------DTI----NKGK-SGTKVQ-C---------LTSA 71 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~--------D~i----~~~~-~~~~~~-~---------~~~~ 71 (761)
.++.+|+|+|+|||||||+++.|++.++ .....+.. +.+ ..+. ...... . ...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999998764 22222211 001 1111 111111 0 0234
Q ss_pred HHHHHCCCcEEEeCCCCCHH---------HHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn~~~~---------~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
...+..|..||+|.+.+..- .+..+..+ ......-.+|+|++|.+++.+|+..|
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 55677888999996321110 12222223 22222335899999999999999644
No 125
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.60 E-value=4.2e-08 Score=94.26 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=64.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC-----------Cc-H-HHHHHHHHHHHHCCCcEEEe-C--
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-----------GT-K-VQCLTSASSALKKGKSVFLD-R-- 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~-----------~~-~-~~~~~~~~~~L~~g~~VIID-~-- 85 (761)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+..... +. . ......+...+.....+||+ +
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 589999999999999999999998 56688887732111 00 0 01123334455545566665 2
Q ss_pred CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
..+....+..+ +..+ .+|+|++|.+++.+|+.+|.
T Consensus 80 ~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 80 LGANEEALNFM---KSRG---TTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp HHTCHHHHHHH---HTTS---EEEEEECCHHHHHHHCBCTT
T ss_pred EeCCHHHHHHH---HcCC---EEEEEECCHHHHHHHHhCCC
Confidence 23444454433 2233 48999999999999998875
No 126
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.59 E-value=2.3e-07 Score=91.18 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=66.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHH-cCCCeEEEecccccCC-------------CCC---cHHHHHHHHHHHHHCCCc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRS-SARPWARICQDTINKG-------------KSG---TKVQCLTSASSALKKGKS 80 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~-~~~~~~~I~~D~i~~~-------------~~~---~~~~~~~~~~~~L~~g~~ 80 (761)
.++.+|+|+|+|||||||+++.|++. ++ +.+++.|.+... ... ........+...+..+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~ 85 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN 85 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCC
Confidence 34568999999999999999999998 68 788988766210 011 122233444555534557
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 81 VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+|+|..+... +.... .-.+|+|++|.+++.+|+.+|..
T Consensus 86 ~vi~~~~~~~--------~~~~~-~~~vi~l~~~~e~~~~Rl~~R~~ 123 (184)
T 1y63_A 86 HVVDYHSSEL--------FPERW-FHMVVVLHTSTEVLFERLTKRQY 123 (184)
T ss_dssp EEEECSCCTT--------SCGGG-CSEEEEEECCHHHHHHHHHHTTC
T ss_pred EEEeCchHhh--------hhhcc-CCEEEEEECCHHHHHHHHHhCCC
Confidence 8888753311 11100 11489999999999999999953
No 127
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.59 E-value=3.5e-07 Score=90.73 Aligned_cols=107 Identities=18% Similarity=0.077 Sum_probs=64.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEEe---cccc----cCC----CCCcHHH-HH----------HHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC---QDTI----NKG----KSGTKVQ-CL----------TSASSAL 75 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~--~~~I~---~D~i----~~~----~~~~~~~-~~----------~~~~~~L 75 (761)
+.+|+|+|+|||||||+|+.|++.++.. +.... .+.+ .++ ....... .+ ..+...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l 83 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML 83 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988742 32221 1111 111 1221111 11 1223456
Q ss_pred HCCCcEEEeCCCCCHHHH--------HHHHHh-CCCCceEEEEEEeCCHHHHHHHHH-hcc
Q 004319 76 KKGKSVFLDRCNLEREQR--------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV-KRI 126 (761)
Q Consensus 76 ~~g~~VIID~tn~~~~~R--------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~-~R~ 126 (761)
..|..||+|+..++.... ..+..+ ......-.+|+|++|.+++.+|+. +|.
T Consensus 84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 788999999865432111 122223 222222348999999999999998 776
No 128
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.58 E-value=5.4e-08 Score=96.75 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+|.|+|++||||||+++.|+. ++ +.+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC--CEEEEccHH
Confidence 689999999999999999998 77 677887765
No 129
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.58 E-value=1.8e-07 Score=108.29 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=79.8
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccCCCC-----CcHHH------HHHHHHHHHHCCCcE
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS-----GTKVQ------CLTSASSALKKGKSV 81 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~~~~-----~~~~~------~~~~~~~~L~~g~~V 81 (761)
..++.+|+|+|+|||||||+|+.|++.++ ..+.+++.|.++.+.. ...+. ....+...+..|..|
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V 472 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV 472 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence 34568999999999999999999998876 5678888888763221 11111 113455566788889
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
|+|..+.....|..++++ +..+ .+.+|||++|.++|.+|.
T Consensus 473 I~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 473 IAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred EEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence 999888888888888887 5544 577899999999999995
No 130
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.58 E-value=2e-07 Score=98.45 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=70.1
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----CCC-------------------CCcHHHH-----
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KGK-------------------SGTKVQC----- 67 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----~~~-------------------~~~~~~~----- 67 (761)
.+.+.+|+|+|+|||||||+|+.|+ .++ +.+|+.|.+. .+. ...+...
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf 148 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVF 148 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHh
Confidence 3457899999999999999999999 577 6778887761 100 0011000
Q ss_pred ---------------------HHHHHHHHHCC-CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 68 ---------------------LTSASSALKKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 68 ---------------------~~~~~~~L~~g-~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
...+......+ ..||+|+..+... .|... .+ .+|||++|.+++.+|+.+|
T Consensus 149 ~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~~--~d---~vI~l~a~~ev~~~Rl~~R 220 (281)
T 2f6r_A 149 GNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQSM--VH---EVWTVVIPETEAVRRIVER 220 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGGG--CS---EEEEEECCHHHHHHHHHHH
T ss_pred CCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHHh--CC---EEEEEcCCHHHHHHHHHHc
Confidence 01111122233 5799999655432 12111 22 3889999999999999998
Q ss_pred ccccCCCCCCChHHHHHHHHhh
Q 004319 126 IEHEGNLQGGKAAAVVNRMLQK 147 (761)
Q Consensus 126 ~~~~~~~~~~v~~~vI~r~~~~ 147 (761)
.. ...+++..++..+
T Consensus 221 ~g-------~s~e~~~~ri~~q 235 (281)
T 2f6r_A 221 DG-------LSEAAAQSRLQSQ 235 (281)
T ss_dssp HC-------CCHHHHHHHHHTS
T ss_pred CC-------CCHHHHHHHHHHc
Confidence 53 2345555555554
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.57 E-value=5e-08 Score=94.19 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=68.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cHHHH------------HHHHHHHHHCCCcEEEeC-
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TKVQC------------LTSASSALKKGKSVFLDR- 85 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~~~~------------~~~~~~~L~~g~~VIID~- 85 (761)
..+|+|+|+|||||||+++.|+..++ +.+++.|.+.....+ ....+ ...+...+.....+|+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~--~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~ 81 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATG 81 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC--CCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECC
Confidence 45799999999999999999999988 677888776321110 11000 012233444556777752
Q ss_pred --CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCCh-HHHHHHHHhhhc
Q 004319 86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA-AAVVNRMLQKKE 149 (761)
Q Consensus 86 --tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~-~~vI~r~~~~~e 149 (761)
..+....+..+. ..+. ++++++|.+++.+|+.+|..++.. ....+ .+.+..++....
T Consensus 82 ~~~~~~~~~~~~l~---~~~~---~i~l~~~~~~l~~R~~~r~~r~~~-~~~~~~~~~~~~~~~~r~ 141 (173)
T 1kag_A 82 GGSVKSRETRNRLS---ARGV---VVYLETTIEKQLARTQRDKKRPLL-HVETPPREVLEALANERN 141 (173)
T ss_dssp TTGGGSHHHHHHHH---HHSE---EEECCCCHHHHHSCC------CCS-SSSCCCHHHHHHHHHHHH
T ss_pred CeEEecHHHHHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHHHHHH
Confidence 333344443332 2233 789999999999999988654321 11222 555666655433
No 132
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.57 E-value=1.6e-07 Score=90.40 Aligned_cols=96 Identities=22% Similarity=0.173 Sum_probs=63.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH--------H----HHHHHHHHHHHCCCcEEEeCC-
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK--------V----QCLTSASSALKKGKSVFLDRC- 86 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~--------~----~~~~~~~~~L~~g~~VIID~t- 86 (761)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ .. . .....+...+. +..+||+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~ 79 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG 79 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence 3699999999999999999999998 677888877421111 00 0 11122333444 556777642
Q ss_pred --CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHH--hc
Q 004319 87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV--KR 125 (761)
Q Consensus 87 --n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~--~R 125 (761)
.+....+..+.. .+ .+|+|++|.+++.+|+. .|
T Consensus 80 ~~~~~~~~~~~l~~---~~---~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 80 GMVLLEQNRQFMRA---HG---TVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp TGGGSHHHHHHHHH---HS---EEEEEECCHHHHHHHHHHHHC
T ss_pred cEEeCHHHHHHHHc---CC---eEEEEECCHHHHHHHHhhccC
Confidence 234455543321 12 48899999999999998 77
No 133
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=1.2e-07 Score=93.39 Aligned_cols=131 Identities=15% Similarity=0.268 Sum_probs=57.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC----C-----------------eEEEeccccc----CCC-----------CCcH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR----P-----------------WARICQDTIN----KGK-----------SGTK 64 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~----~-----------------~~~I~~D~i~----~~~-----------~~~~ 64 (761)
.+++|+|++||||||+++.|...+.. . +..++.+.+. .+. ++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 47899999999999999999876531 1 1111111100 000 0000
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCC-CCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 65 VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGG-PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 65 ~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~-~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
...+.+.+..|+.+|+|.. ......++. .+....+|++.+|. +++.+|+.+|... ..+.+-.
T Consensus 82 ---~~~i~~~l~~g~~~il~~~------~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~-------~~~~i~~ 145 (186)
T 3a00_A 82 ---VASVKQVSKSGKTCILDID------MQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTE-------TEESINK 145 (186)
T ss_dssp ---HHHHHHHHHTTCEEEEECC------HHHHHHHHTCGGGCCEEEEEECSCC---------------------------
T ss_pred ---HHHHHHHHHcCCeEEEEEc------HHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCC-------CHHHHHH
Confidence 1356677889999999862 122222222 33444578888865 9999999999753 2233333
Q ss_pred HHHhhhcCCCcc--CCceEEEEcCChh
Q 004319 143 RMLQKKELPKLS--EGFSRITLCQNEN 167 (761)
Q Consensus 143 r~~~~~e~P~~~--EgFd~V~vv~~~~ 167 (761)
|+......-... ..||.|++.++.+
T Consensus 146 rl~~~~~~~~~~~~~~~d~vi~nd~~~ 172 (186)
T 3a00_A 146 RLSAAQAELAYAETGAHDKVIVNDDLD 172 (186)
T ss_dssp -------------CCCCSEEEECSSHH
T ss_pred HHHHHHHHHHhhcccCCcEEEECcCHH
Confidence 444433222222 4578776665433
No 134
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.53 E-value=2.6e-07 Score=106.43 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=78.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC-----CCcH--H----HHHHHHHHHHHCCCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGTK--V----QCLTSASSALKKGKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~-----~~~~--~----~~~~~~~~~L~~g~~VIID 84 (761)
.+.+|+|+|+|||||||+|+.|++.++ ..+.+++.|.++... +... . .+...+...+..|..||+|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d 450 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICA 450 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 468999999999999999999998764 456788988875321 1111 1 1123455667889999999
Q ss_pred CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHH
Q 004319 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (761)
Q Consensus 85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~ 123 (761)
.++.....|..+.++ ... .+.+|+|++|.++|.+|+.
T Consensus 451 ~~~~~~~~r~~~~~~l~~~--d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 451 LVSPYRSARNQVRNMMEEG--KFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp CCCCCHHHHHHHHTTSCTT--CEEEEEEECCGGGHHHHCC
T ss_pred cCCCCHHHHHHHHHHhhcC--CEEEEEEeCCHHHHHHHhh
Confidence 989888888888877 542 3678999999999999975
No 135
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.51 E-value=4.4e-08 Score=97.65 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+.+|.|+|++||||||+++.|+. ++ +.+++.|.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg--~~~id~d~~ 35 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LG--VPLVDADVV 35 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TT--CCEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CC--CcccchHHH
Confidence 35799999999999999999987 77 566888775
No 136
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.49 E-value=9.5e-08 Score=92.84 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=61.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c---------H---HHHHHHHHHHHHCCCcEEEeCCCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T---------K---VQCLTSASSALKKGKSVFLDRCNL 88 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~---------~---~~~~~~~~~~L~~g~~VIID~tn~ 88 (761)
+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ + + ......+.+.+.....+||+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 589999999999999999999998 777998887421110 0 0 111123334455556677773211
Q ss_pred CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
....+. ++..+ .+|||++|.+++.+|+.+|.
T Consensus 84 ~~~~~~----l~~~~---~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 84 FVNVSN----LEKAG---FCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp GGGSTT----GGGGC---EEEEEECCHHHHTTCCCGGG
T ss_pred EehhhH----HhcCC---EEEEEeCCHHHHHHHHhccc
Confidence 111121 32222 48999999999999998884
No 137
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.49 E-value=1.6e-07 Score=92.78 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=31.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.++.+|.|+|++||||||+++.|++. + +.+++.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-G--YPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-C--CEEEcccHH
Confidence 45789999999999999999999987 6 667888765
No 138
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.48 E-value=4e-07 Score=88.76 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc------cCCCCC---------cH--HHHH----HHHHHHH-
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI------NKGKSG---------TK--VQCL----TSASSAL- 75 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i------~~~~~~---------~~--~~~~----~~~~~~L- 75 (761)
.+|+|+|+|||||||+|+.|++.++ ..+.+++.|++ +++... .. ...+ ..+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3799999999999999999999876 33677775443 222111 11 1111 2234455
Q ss_pred -HCCCcEEEeCCCCCHHH--------HHHHHHhCCCCceEEEEEEeCCHHHHHHH-HHh--cc
Q 004319 76 -KKGKSVFLDRCNLEREQ--------RTDFVKLGGPEVDVHAVVLDLPAKLCISR-SVK--RI 126 (761)
Q Consensus 76 -~~g~~VIID~tn~~~~~--------R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R-~~~--R~ 126 (761)
..+..||+|+......+ +..+..+. . -.+|+|++|.+++.+| +.. |.
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~-~---~~vi~l~~~~~~~~~rr~~~~~R~ 140 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN-P---SVIFLLEADPKIILSRQKRDTTRN 140 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC-C---SEEEEEECCHHHHHHHHHHCTTTC
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHhcC-C---CEEEEEeCCHHHHHHHHHhhcccC
Confidence 67889999985211000 22222221 1 2488999999998866 666 64
No 139
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.47 E-value=3.8e-07 Score=90.97 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccC-CC--------CC--------cHHHHHHHHHHHHH-
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK-GK--------SG--------TKVQCLTSASSALK- 76 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~-~~--------~~--------~~~~~~~~~~~~L~- 76 (761)
.-.++.+|.|+|+|||||||+++.|+..+ + +.++++|.+.. +. .. ....+...+...+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 34456799999999999999999999876 5 77888887731 10 00 12223333333332
Q ss_pred --------------CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 77 --------------KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 77 --------------~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
....||+|+..... .+ .+. ...+ .++++++|.+++.+|+.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~~-~~~--~~~d---~~i~l~~~~~~~~~R~~~R~ 151 (207)
T 2qt1_A 95 ARHSVVSTDQESAEEIPILIIEGFLLFN-YK-PLD--TIWN---RSYFLTIPYEECKRRRSTRV 151 (207)
T ss_dssp HTTSSCCC-----CCCCEEEEECTTCTT-CG-GGT--TTCS---EEEEEECCHHHHHHHHHHSC
T ss_pred CCCCCcCCCeeecCCCCEEEEeehHHcC-cH-HHH--HhcC---eeEEEECCHHHHHHHHHHcC
Confidence 24578999954432 11 111 2223 38899999999999998885
No 140
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.47 E-value=7.8e-07 Score=91.44 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=66.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHH--C
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~ 77 (761)
++.+|+|+|+|||||||+++.|++.++ +..++.+.+ ++ +.........+.+...+. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg--~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG--LQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 467999999999999999999999988 333554333 11 111122222233333343 4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+..+|+|+......+...+..+...+ .+++|++|.+++.+|+..|..
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~l~r~~~r~~ 150 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVD---LVISLNIPFETLKDRLSRRWI 150 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCC---EEEEEECCHHHHHHHHHTEEE
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCC---EEEEEECCHHHHHHHHHcCCC
Confidence 56788998665544333332222233 478999999999999988854
No 141
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.44 E-value=4.2e-07 Score=89.59 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=56.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc----cc-c----CCCCCcH-HH------HHHHHHHHHHCCCcEEEeC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----TI-N----KGKSGTK-VQ------CLTSASSALKKGKSVFLDR 85 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D----~i-~----~~~~~~~-~~------~~~~~~~~L~~g~~VIID~ 85 (761)
+|+|+|+|||||||+++.|++.++. .++... .+ . +...... .+ ....+...+..+ .+|+|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~vi~d~ 78 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY--EIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLE-NIIFDR 78 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC--EEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC-------CEEEES
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC--cEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccC-CEEEEe
Confidence 6899999999999999999999883 334321 00 0 1000000 00 012222334455 499999
Q ss_pred CCCCH---------------HHHHHHHH----h-CCC-------CceEEEEEEeCCHHHHHHHHHhcc
Q 004319 86 CNLER---------------EQRTDFVK----L-GGP-------EVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 86 tn~~~---------------~~R~~~~~----l-~~~-------~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
+.... ..+..+.. . ... ...-.+|+|++|.+++.+|+.+|.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 146 (205)
T 2jaq_A 79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG 146 (205)
T ss_dssp CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 76642 11111111 1 111 222368999999999999998875
No 142
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.38 E-value=2.4e-06 Score=84.43 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=57.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEeccc--------c----cCC-CCCcH-HHH---------HHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDT--------I----NKG-KSGTK-VQC---------LTSASSA 74 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~--------i----~~~-~~~~~-~~~---------~~~~~~~ 74 (761)
++.+|+|+|+|||||||+++.|++.+ +..+..+.... + .++ ..... ... ...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~ 82 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ 82 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999987 33333332111 0 111 11111 111 1223456
Q ss_pred HHCCCcEEEeCCCCCHHH--------HHHHHHh-CCCCceEEEEEEeCCHHHHHH
Q 004319 75 LKKGKSVFLDRCNLEREQ--------RTDFVKL-GGPEVDVHAVVLDLPAKLCIS 120 (761)
Q Consensus 75 L~~g~~VIID~tn~~~~~--------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~ 120 (761)
+..|..||+|+...+... +..+..+ ......-.+|+|++|.+++.+
T Consensus 83 l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 83 LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 678888999985432210 1112222 221112248999999999877
No 143
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.37 E-value=2.1e-06 Score=84.93 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=47.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-EEecccccC-------CC--C-CcHH---H------------------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTINK-------GK--S-GTKV---Q------------------ 66 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~-~I~~D~i~~-------~~--~-~~~~---~------------------ 66 (761)
+..+|+|+|++||||||+++.|...+....- .+. +..+. +. . .... .
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSIS-MTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCC-EECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecc-cccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 3468999999999999999999887621111 111 11110 00 0 0000 0
Q ss_pred --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
....+...+..|..||+|........ +.+. ..-.+.++...++.+++.+|+.+|..
T Consensus 84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~ 141 (207)
T 2j41_A 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQ---VRKK--FPDALFIFLAPPSLEHLRERLVGRGT 141 (207)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHH---HHHH--CTTSEEEEEECCC-------------
T ss_pred CCCHHHHHHHHHcCCeEEEEECHHHHHH---HHHh--cCCeEEEEEECCCHHHHHHHHHhcCC
Confidence 01345666788999999985443322 2222 11113333334678999999998864
No 144
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=98.36 E-value=4.1e-08 Score=96.78 Aligned_cols=112 Identities=12% Similarity=0.024 Sum_probs=75.3
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccc
Q 004319 188 GSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEV 264 (761)
Q Consensus 188 Gc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (761)
|+.+. +.+..+++.+++.+++.- .+..+ |... .|.++++ +++|.|.|-|+. .....+..-.+
T Consensus 50 gGv~~-AI~~aaG~~l~~ec~~~~~~~g~~~~--G~a~-------iT~~~~l---~VIH~vgP~~~~--~~~~~L~~~y~ 114 (174)
T 2vri_A 50 GGVAR-AIDILTEGQLQSLSKDYISSNGPLKV--GAGV-------MLECEKF---NVFNVVGPRTGK--HEHSLLVEAYN 114 (174)
T ss_dssp SHHHH-HHHHHTTTHHHHHHHHHHHHHCSCCT--TCEE-------EEECSSC---EEEEEECCCSST--THHHHHHHHHH
T ss_pred CcHhH-HHHHHhhHHHHHHHHHHHHhcCCCCC--CeEE-------EEECCCC---EEEEEcCCCCCc--chHHHHHHHHH
Confidence 33443 567777788888887642 12222 3332 3445554 999999998753 12223344455
Q ss_pred cccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 004319 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGS 325 (761)
Q Consensus 265 ~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s 325 (761)
.|+.. ..|||||+||||+||||+++|++++++++++ ..++++.++..++.
T Consensus 115 ~~L~~------~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f~~~~~~ 164 (174)
T 2vri_A 115 SILFE------NGIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVYSSNEEQ 164 (174)
T ss_dssp HHHHS------SSCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEECSHHHHH
T ss_pred HHHhh------CCcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEcCHHHHH
Confidence 55552 2499999999999999999999999999887 46788877654433
No 145
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.35 E-value=3.1e-06 Score=85.71 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-----CC-------------------CCcHHH-----------
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----GK-------------------SGTKVQ----------- 66 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-----~~-------------------~~~~~~----------- 66 (761)
.|-|+|.+||||||+++.|.+ +| +.+++.|.+.. +. ..++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g--~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RG--ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 588999999999999999987 88 77899887621 00 001110
Q ss_pred -----------HHHHHHHHHHC--CCcEEEeCCCCCH-HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCC
Q 004319 67 -----------CLTSASSALKK--GKSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (761)
Q Consensus 67 -----------~~~~~~~~L~~--g~~VIID~tn~~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~ 132 (761)
..+.+.+.+.. +..+|+|..-+.. .....+.+. +|++++|.++..+|+.+|..
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~--------vi~V~ap~e~r~~Rl~~Rdg----- 154 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDR--------VLVVDCPVDTQIARVMQRNG----- 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSE--------EEEEECCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCe--------EEEEECCHHHHHHHHHhcCC-----
Confidence 11222333322 3458999977776 554444333 88999999999999999974
Q ss_pred CCCChHHHHHHHHhhh
Q 004319 133 QGGKAAAVVNRMLQKK 148 (761)
Q Consensus 133 ~~~v~~~vI~r~~~~~ 148 (761)
...+++..++..++
T Consensus 155 --~s~eea~~ri~~Q~ 168 (210)
T 4i1u_A 155 --FTREQVEAIIARQA 168 (210)
T ss_dssp --CCHHHHHHHHHHSC
T ss_pred --CCHHHHHHHHHHcC
Confidence 34566666666654
No 146
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=98.34 E-value=3.2e-08 Score=110.36 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=67.3
Q ss_pred cccccccccccccccccc--cCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-CeE
Q 004319 239 LEGQEITSLLSDAAGEEV--KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NAR 315 (761)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-~i~ 315 (761)
.+++|+|-|-|..+.++- +.+.+--+.|+. .+...+++|||||.||||+||||++ ++++++++|.+|++..+ ++.
T Consensus 405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLk-LA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~ 482 (670)
T 4gua_A 405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVAD-LVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVT 482 (670)
T ss_dssp EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHH-HHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEE
T ss_pred ceEEEcCCCCccCCCCchHHHHHHHHHHHHHH-HHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEE
Confidence 789999999998655321 123333444554 6667899999999999999999987 68999999999999876 578
Q ss_pred EEEecccccchhh
Q 004319 316 LVLVDLTQGSKIL 328 (761)
Q Consensus 316 ~v~vD~~~~s~~l 328 (761)
|+++|..-...+.
T Consensus 483 IvcfDKkwe~~Ik 495 (670)
T 4gua_A 483 IYCLDKKWKERID 495 (670)
T ss_dssp EECSCHHHHHHHH
T ss_pred EEEecChHHHHHH
Confidence 8888876544443
No 147
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.34 E-value=9.9e-07 Score=88.68 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=30.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
++.+|+|+|++||||||+++.|++ ++ +.+++.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG--INVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC--CEEEEccHH
Confidence 467999999999999999999987 77 677887765
No 148
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.34 E-value=4.1e-07 Score=87.56 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CCC--------Cc--HHHHHHHHHHHHHCCCcE-EEeCC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS--------GT--KVQCLTSASSALKKGKSV-FLDRC 86 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~~--------~~--~~~~~~~~~~~L~~g~~V-IID~t 86 (761)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +.. +. .......+...+.....+ |++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g 85 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK--LEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG 85 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 3789999999999999999999999 55688887632 111 10 001111222223333344 55431
Q ss_pred -CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 87 -n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
..... +. ++.. -.+|||++|.+++.+|+.+|
T Consensus 86 ~g~~~~-~~----l~~~---~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 86 GGIVMH-EN----LKGL---GTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp GGGGGC-GG----GTTS---EEEEEEECCHHHHHHHHCC-
T ss_pred CCEech-hH----HhcC---CEEEEEECCHHHHHHHHhcc
Confidence 11111 11 3222 24899999999999999888
No 149
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.32 E-value=8.9e-07 Score=86.28 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEecccc-c-----CCCC---------Cc-HHH-HHHHH---HHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI-N-----KGKS---------GT-KVQ-CLTSA---SSALK 76 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D~i-~-----~~~~---------~~-~~~-~~~~~---~~~L~ 76 (761)
+.+|+|+|+|||||||+++.|++.++. .+.+++.|++ + .+.. .. ... ....+ ...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA 82 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence 358999999999999999999998762 2566775533 1 1210 00 111 11111 22234
Q ss_pred CCCcEEEeCCCCCH--HHH-----HHHHHhCCCCceEEEEEEeCCHHHHHH-HHHh--ccc
Q 004319 77 KGKSVFLDRCNLER--EQR-----TDFVKLGGPEVDVHAVVLDLPAKLCIS-RSVK--RIE 127 (761)
Q Consensus 77 ~g~~VIID~tn~~~--~~R-----~~~~~l~~~~~~v~vV~Ld~p~e~~~~-R~~~--R~~ 127 (761)
.+..||+|+..... ... ..++.....+ + +|||++|.+++.+ |+.+ |..
T Consensus 83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~l~~~~~~~~~rRl~~~~R~r 140 (192)
T 1kht_A 83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPD--L-IIVVETTGDEILMRRMSDETRVR 140 (192)
T ss_dssp TTSCEEEECCSEEEETTEEEESSCHHHHHHHCCS--E-EEEEECCHHHHHHHHHTSSSCSS
T ss_pred cCCeEEEccceeccccccccccCcHHHHhccCCC--E-EEEEeCCHHHHHHHHhhhcccCC
Confidence 56789999854311 000 0111111122 2 8999999999996 8877 543
No 150
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.31 E-value=2.2e-06 Score=84.89 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
+|.|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG--VPYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--CceeccchHH
Confidence 899999999999999999999998 6668877764
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.31 E-value=4.5e-06 Score=81.62 Aligned_cols=123 Identities=23% Similarity=0.225 Sum_probs=75.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------CCCCc----HHHHH----HHHHHHHHCCCcEE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------GKSGT----KVQCL----TSASSALKKGKSVF 82 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~~~~~----~~~~~----~~~~~~L~~g~~VI 82 (761)
+..+++|+|+|||||||+++.|+..++....+++.|.+.. +.... ..... ..+......|..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~ 87 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVI 87 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCeEE
Confidence 4578999999999999999999987655567888877631 11111 11111 11222345567788
Q ss_pred EeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 004319 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL 150 (761)
Q Consensus 83 ID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~ 150 (761)
+|... ....+..+..+ +..+..+++..+.+++.+|+..|.... ....+.+..+++.+..
T Consensus 88 ~~~~~-~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~-----lld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 88 LDGVV-RPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFAD 146 (191)
T ss_dssp ECSCC-CTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTC
T ss_pred EeccC-cHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCc-----cCCHHHHHHHHHHHhc
Confidence 89843 22233333222 334567899999999999999985421 1223455555555543
No 152
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.31 E-value=2.7e-06 Score=86.35 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=66.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec-----------ccccCCC---CCcHHH-----------HHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----------DTINKGK---SGTKVQ-----------CLTSA 71 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~-----------D~i~~~~---~~~~~~-----------~~~~~ 71 (761)
..+|++.|++||||||+++.|.+.+. ..+..... +.+.++. ...+.. ..+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i 85 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVI 85 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988764 22322211 1112221 222111 11335
Q ss_pred HHHHHCCCcEEEeCCC------------CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 72 SSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn------------~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
..+|..|..||.|... +...+-..+..+ ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus 86 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~ 154 (213)
T 4edh_A 86 RPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR 154 (213)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred HHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 5678899999999832 222222222222 1122344689999999999999999853
No 153
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.29 E-value=6.5e-06 Score=83.81 Aligned_cols=136 Identities=14% Similarity=0.157 Sum_probs=84.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeE----EEeccc---ccCCC---CCcHHH---------------------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-PWA----RICQDT---INKGK---SGTKVQ--------------------- 66 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~----~I~~D~---i~~~~---~~~~~~--------------------- 66 (761)
+-.+++|+|++||||||+.+.|...... .+. +...+. ..++. +.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 3468999999999999999999877541 111 111100 00000 000000
Q ss_pred --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHH
Q 004319 67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (761)
Q Consensus 67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r 143 (761)
-...+.+.+..|+.+|+| ++...+..+.+. . . ...+++...+.+.+.+|+..|.. +.++++..|
T Consensus 95 g~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~-~--~~tI~i~th~~~~l~~Rl~~rG~-------~~~e~i~~r 161 (219)
T 1s96_A 95 GTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP-H--ARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAKR 161 (219)
T ss_dssp EEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT-T--CEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHHH
T ss_pred CCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc-C--CEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHHH
Confidence 013467788899999999 888888888887 6 2 23445555678999999987763 456666667
Q ss_pred HHhhhcCCCccCCceEEEEcCChh
Q 004319 144 MLQKKELPKLSEGFSRITLCQNEN 167 (761)
Q Consensus 144 ~~~~~e~P~~~EgFd~V~vv~~~~ 167 (761)
+.+...+-.....|+.+++.++.+
T Consensus 162 l~~a~~e~~~~~~~d~~i~Nd~l~ 185 (219)
T 1s96_A 162 MAQAVAEMSHYAEYDYLIVNDDFD 185 (219)
T ss_dssp HHHHHHHHTTGGGSSEEEECSSHH
T ss_pred HHHHHHHHhhccCCCEEEECcCHH
Confidence 655422222345688886665433
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.28 E-value=2.2e-06 Score=86.31 Aligned_cols=35 Identities=23% Similarity=0.558 Sum_probs=30.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+.+|.|+|+|||||||+++.|++.++ +.+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcce
Confidence 45799999999999999999999988 677887766
No 155
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.25 E-value=2.3e-06 Score=88.99 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=62.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC----CCCCcH----------HHHH-HHHHHHHHC-CCcEEE
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----GKSGTK----------VQCL-TSASSALKK-GKSVFL 83 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~----~~~~~~----------~~~~-~~~~~~L~~-g~~VII 83 (761)
...|+|+|++||||||+++.|+..++ +.+++.|.+.. +..... .... ..+...+.. ...||.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via 125 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVS 125 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence 35799999999999999999999999 77788887742 211100 0111 122333333 345555
Q ss_pred eC--CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 84 DR--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 84 D~--tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
++ +......+..+ + .+ .+|||++|.+++.+|+.+|.
T Consensus 126 ~GgG~v~~~~~~~~l---~-~~---~vV~L~a~~e~l~~Rl~~~~ 163 (250)
T 3nwj_A 126 TGGGAVIRPINWKYM---H-KG---ISIWLDVPLEALAHRIAAVG 163 (250)
T ss_dssp CCGGGGGSHHHHHHH---T-TS---EEEEEECCHHHHHHHHHC--
T ss_pred cCCCeecCHHHHHHH---h-CC---cEEEEECCHHHHHHHHhhcC
Confidence 44 44444554433 3 23 38999999999999998743
No 156
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.22 E-value=1.8e-06 Score=88.49 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=62.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc-------CCCeEEEec-----------ccccCCCCCcHHH-----------HHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQ-----------DTINKGKSGTKVQ-----------CLT 69 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-------~~~~~~I~~-----------D~i~~~~~~~~~~-----------~~~ 69 (761)
+..+|++.|++||||||+++.|.+.+ +..+..... ..+.++....... ..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~ 103 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL 103 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999998876 433322211 1111222222211 113
Q ss_pred HHHHHHHCCCcEEEeCCCC------------CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 70 SASSALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 70 ~~~~~L~~g~~VIID~tn~------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
.+..+|..|..||.|.... ..++-..+..+ ...-.+-.+|+|++|.+++.+|+.+|.
T Consensus 104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 4566788999999997322 22222222222 111223458999999999999999885
No 157
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.21 E-value=7.2e-07 Score=89.08 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
...+|.|+|.+||||||+++.|++.++ +.+++.|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHH
Confidence 356899999999999999999999888 778998877
No 158
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.21 E-value=3.2e-06 Score=97.45 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=60.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccCCC----CCcH------HHHHHHHHHHH-HCCCcEEE
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGK----SGTK------VQCLTSASSAL-KKGKSVFL 83 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~~~----~~~~------~~~~~~~~~~L-~~g~~VII 83 (761)
+..+|+|+|++||||||+++.|+..++ ..+..++.|.+.... ..+. ...+..+.+.+ ..+..+|.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~ 447 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAIC 447 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 557999999999999999999998864 235568888774311 0111 11112222223 35555565
Q ss_pred eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHH
Q 004319 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (761)
Q Consensus 84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~ 123 (761)
.........|..+.++ +..+ .+..|||++|.++|.+|..
T Consensus 448 ~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 448 APIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp CCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred ecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence 5544446677777777 6666 6789999999999999964
No 159
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.20 E-value=1.2e-06 Score=87.50 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=53.6
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC-----CC------------cHHHHHHHHHHHH-
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SG------------TKVQCLTSASSAL- 75 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~-----~~------------~~~~~~~~~~~~L- 75 (761)
...+.+|.|+|++||||||+++.|...+ +..+.+++.|.+.... .+ ++..+.+.+...+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 3467899999999999999999998764 4445667777764210 00 1111112211111
Q ss_pred ------------------------HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 76 ------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 76 ------------------------~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
..+..||+|+..+.......+ .+ .+|++++|.+++.+|+.+|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~-----~d---~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPF-----FD---FVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTGGG-----CS---EEEEECCC------------
T ss_pred cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHHhh-----cC---EEEEEeCCHHHHHHHHhcCC
Confidence 124568999966543221111 22 38999999999999999997
No 160
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.19 E-value=6.2e-07 Score=87.90 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..+++|+|++||||||+++.|...+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998653
No 161
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.19 E-value=1.3e-06 Score=88.75 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHH-HHcCC--------------------CeEEEeccccc----CCCCCc---HH-----H
Q 004319 20 QILVIMVGAPGSGKSTFCEHVM-RSSAR--------------------PWARICQDTIN----KGKSGT---KV-----Q 66 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~-~~~~~--------------------~~~~I~~D~i~----~~~~~~---~~-----~ 66 (761)
..++.|+|++||||||+++.|+ ..+.. .+...+.+.+. .+.... .. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGV 106 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCCC
Confidence 4589999999999999999999 66521 11111111100 000000 00 0
Q ss_pred HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEE-EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVV-LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (761)
Q Consensus 67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~-Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~ 145 (761)
....+.+.+..++.+|+|.. ......+. ......+..|+ ..++.+++.+|+.+|... ..+++..++.
T Consensus 107 ~~~~i~~~~~~~~~vild~~---~~g~~~~~--~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~-------~~~~i~~rl~ 174 (231)
T 3lnc_A 107 PRKNLEDNVDKGVSTLLVID---WQGAFKFM--EMMREHVVSIFIMPPSMEELRRRLCGRRAD-------DSEVVEARLK 174 (231)
T ss_dssp ECTTHHHHHHHTCEEEEECC---HHHHHHHH--HHSGGGEEEEEEECSCHHHHHHC---------------------CHH
T ss_pred CHHHHHHHHHcCCeEEEEcC---HHHHHHHH--HhcCCCeEEEEEECCcHHHHHHHHHHcCCC-------CHHHHHHHHH
Confidence 00234556677888999852 11222222 22212234444 456889999999998542 2233333333
Q ss_pred hhhcCCCccCCceEEEEcCChhhH
Q 004319 146 QKKELPKLSEGFSRITLCQNENDV 169 (761)
Q Consensus 146 ~~~e~P~~~EgFd~V~vv~~~~ei 169 (761)
...........|+.|++.++.+++
T Consensus 175 ~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 175 GAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp HHHHHHTTGGGSSEEEECSSHHHH
T ss_pred HHHHHHhhhcCCeEEEECcCHHHH
Confidence 332212234567888776543433
No 162
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.15 E-value=1.3e-05 Score=82.51 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=61.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CC-eEEEec-------c----cccC----CCCCcHHH----------H-H
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RP-WARICQ-------D----TINK----GKSGTKVQ----------C-L 68 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~-~~~I~~-------D----~i~~----~~~~~~~~----------~-~ 68 (761)
++.+|++.|++||||||+++.|.+.+. .. ...+.. . .+.. .......+ . .
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~ 105 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE 105 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999987764 23 222211 1 1111 11221111 1 1
Q ss_pred HHHHHHHHCCCcEEEeCCC------------CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 69 TSASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 69 ~~~~~~L~~g~~VIID~tn------------~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
+.+..+|..|..||.|... +..++...+..+ ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus 106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE 177 (236)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 3456678899999999732 222222222222 1111223588999999999999999863
No 163
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.15 E-value=1.7e-05 Score=80.39 Aligned_cols=108 Identities=20% Similarity=0.180 Sum_probs=65.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---C-CeEEEec-----------cccc--C----CCCCcHHH----------H-
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA---R-PWARICQ-----------DTIN--K----GKSGTKVQ----------C- 67 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~-~~~~I~~-----------D~i~--~----~~~~~~~~----------~- 67 (761)
..+|++.|++||||||+++.|.+.+. . ....... +.+. . ....+..+ .
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 35899999999999999999987764 2 2222211 1112 1 11222111 1
Q ss_pred HHHHHHHHHCCCcEEEeCCCCC------------HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 68 ~~~~~~~L~~g~~VIID~tn~~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+.+..+|..|..||.|....+ ..+-..+... ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~ 155 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE 155 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 1346678899999999983222 2222222222 1111233589999999999999999954
No 164
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.14 E-value=1.5e-05 Score=86.09 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=69.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----------------CC-------------CCCcHHHH-
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KG-------------KSGTKVQC- 67 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----------------~~-------------~~~~~~~~- 67 (761)
++.+|+|+||+||||||+|..|++.++ ..+|+.|.+. .+ ...+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~ 116 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFR 116 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHH
Confidence 346999999999999999999999998 7788887761 00 11111222
Q ss_pred ---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH------------------h-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 68 ---LTSASSALKKGKSVFLDRCNLEREQRTDFVK------------------L-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 68 ---~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~------------------l-~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
...+.+....|+.+|+-+... -+.+.++. + ....+...+|+|+++.+++.+|+.+|
T Consensus 117 ~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 194 (339)
T 3a8t_A 117 SLAGKAVSEITGRRKLPVLVGGSN--SFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence 234445557888888765321 12222221 1 11345678899999999999999998
Q ss_pred cc
Q 004319 126 IE 127 (761)
Q Consensus 126 ~~ 127 (761)
..
T Consensus 195 ~~ 196 (339)
T 3a8t_A 195 VD 196 (339)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 165
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.14 E-value=2.3e-05 Score=78.52 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
|.+|+|+|++||||||+++.|++.++ +.+++.|.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC--CceecCChH
Confidence 46799999999999999999999988 667887665
No 166
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.12 E-value=1.1e-05 Score=81.15 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=62.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEec-------ccc----cCCC-CCcHHH-----------HHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-------DTI----NKGK-SGTKVQ-----------CLTSASSAL 75 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~-------D~i----~~~~-~~~~~~-----------~~~~~~~~L 75 (761)
..|++-|+.||||||+++.|.+.+.. .+..... ..+ .++. .....+ ....+..+|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l 82 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL 82 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988742 2322211 111 1222 111111 123456778
Q ss_pred HCCCcEEEeCCCC------------CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 76 KKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 76 ~~g~~VIID~tn~------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
..|..||.|.... ...+-..+... ...-.+=.+|+|++|.+++.+|+.+|...
T Consensus 83 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~ 148 (205)
T 4hlc_A 83 KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD 148 (205)
T ss_dssp HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC----
T ss_pred HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc
Confidence 9999999998332 12222222222 11111224899999999999999988753
No 167
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.09 E-value=2.6e-05 Score=79.56 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=31.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
..+.+|.|+|++||||||+++.|++.++ +.+++.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCe
Confidence 4456899999999999999999999888 667887666
No 168
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.08 E-value=1.3e-05 Score=83.05 Aligned_cols=36 Identities=25% Similarity=0.534 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
..+|.|+|++||||||+++.|++.++ +.+++.|.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence 46899999999999999999999998 6667766653
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.07 E-value=3.8e-05 Score=76.42 Aligned_cols=134 Identities=12% Similarity=0.175 Sum_probs=72.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC---------------------CCeEEEeccccc---------------CCCCCc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA---------------------RPWARICQDTIN---------------KGKSGT 63 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---------------------~~~~~I~~D~i~---------------~~~~~~ 63 (761)
..+++|+|++||||||+.+.|...+. ..+..++.+.++ ...++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~ 83 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGT 83 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCC
Confidence 35789999999999999999987542 112222221111 000111
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 64 KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 64 ~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
-...+.++++.+..+++|. .. ..+............++++ ++.+++.+|...|.. ...+.+..
T Consensus 84 ---~~~~i~~~~~~~~~~~~~~---~~---~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~-------~~e~~i~~ 147 (198)
T 1lvg_A 84 ---SKEAVRAVQAMNRICVLDV---DL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAK 147 (198)
T ss_dssp ---EHHHHHHHHHTTCEEEEEC---CH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHH
T ss_pred ---CHHHHHHHHHcCCcEEEEC---CH---HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHH
Confidence 0134556677777777765 11 2222231112234445555 558899999998875 23444444
Q ss_pred HHHhhhcCCCcc---CCceEEEEcCChhhH
Q 004319 143 RMLQKKELPKLS---EGFSRITLCQNENDV 169 (761)
Q Consensus 143 r~~~~~e~P~~~---EgFd~V~vv~~~~ei 169 (761)
++......-... ..||.|++.++.++.
T Consensus 148 ~l~~~~~~~~~a~~~~~~D~iivnd~le~a 177 (198)
T 1lvg_A 148 RLAAARTDMESSKEPGLFDLVIINDDLDKA 177 (198)
T ss_dssp HHHHHHHHTTGGGSTTTCSEEEECSSHHHH
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCHHHH
Confidence 443332111112 678998888764433
No 170
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.06 E-value=1.7e-07 Score=93.56 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEe---------cccccC---CCC-----CcH-HHHH---------HHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC---------QDTINK---GKS-----GTK-VQCL---------TSA 71 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~---------~D~i~~---~~~-----~~~-~~~~---------~~~ 71 (761)
+|+|+|++||||||+++.|.+.++. .+..+. .|.++. +.. ... ...+ ..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 81 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI 81 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHH
Confidence 7899999999999999999988751 111121 222221 100 111 1111 123
Q ss_pred HHHHHCCCcEEEeCCCCCHHH--------------HHHHHHhC----CCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319 72 SSALKKGKSVFLDRCNLEREQ--------------RTDFVKLG----GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (761)
Q Consensus 72 ~~~L~~g~~VIID~tn~~~~~--------------R~~~~~l~----~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~ 133 (761)
...+..|..||+|+....... +..+..+. .....-.+|+|++|.+++.+|+.+|....+++.
T Consensus 82 ~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~ 161 (214)
T 1gtv_A 82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA 161 (214)
T ss_dssp HHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEEE
T ss_pred HHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccccc
Confidence 334456788999996644211 11112211 111344689999999999999999965311000
Q ss_pred C---CChHHHHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHHHh
Q 004319 134 G---GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTY 176 (761)
Q Consensus 134 ~---~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~~~ 176 (761)
. +...+...++...+........-..++++++..+++++....
T Consensus 162 ~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i 207 (214)
T 1gtv_A 162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL 207 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHh
Confidence 0 112344444433332211111012456677766676665543
No 171
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.96 E-value=5.1e-05 Score=75.78 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec-------ccc----cCCCCCc----------HHHHHHHHHHHHHC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTI----NKGKSGT----------KVQCLTSASSALKK 77 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~-------D~i----~~~~~~~----------~~~~~~~~~~~L~~ 77 (761)
+|++-|+.||||||.++.|.+.+ +..+..... ..+ .+....+ +.+....+..+|..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~ 81 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 68889999999999999998765 333433321 011 1111111 12233566778899
Q ss_pred CCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 78 GKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 78 g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
|..||.|....+. ..-..+... ...-.+-.+++|++|.+++.+|..+|.+
T Consensus 82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr 144 (197)
T 3hjn_A 82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR 144 (197)
T ss_dssp TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT
T ss_pred CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc
Confidence 9999999843222 222222222 1111133588999999999999766544
No 172
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.92 E-value=5.3e-06 Score=86.14 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=27.0
Q ss_pred CCCccchhhhhhhh-cccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE
Q 004319 1 MDTDIDDTCKAKDE-EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI 51 (761)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I 51 (761)
|..+..-.|-.... .....+.+|+|.|++||||||+++.|++.+.. +.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~-~~~i 54 (263)
T 1p5z_B 4 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCED-WEVV 54 (263)
T ss_dssp -------------------CCEEEEEECSTTSSHHHHHTTTGGGCTT-EEEE
T ss_pred cccchhccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcCC-CEEE
Confidence 34444455543333 23346789999999999999999999998732 4445
No 173
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.92 E-value=6e-06 Score=88.90 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=67.0
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccC--------------CCCC--cHHHHHHHHHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINK--------------GKSG--TKVQCLTSASSAL 75 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~--------------~~~~--~~~~~~~~~~~~L 75 (761)
...|.+|.|+|++||||||+++.|...+. .....++.|.+.. +... +.... ......+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l-~~~L~~L 167 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSL-LRVLNAI 167 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHH-HHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHH-HHHHHhh
Confidence 45688999999999999999999987764 2466788887631 1111 12222 2333445
Q ss_pred HCCC---------------------------cEEEeCCCCCHHHH-----HHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319 76 KKGK---------------------------SVFLDRCNLEREQR-----TDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 76 ~~g~---------------------------~VIID~tn~~~~~R-----~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
..|+ .+|+|+.++-...+ ..|..+ ...+ ..||+++|.+++++|.
T Consensus 168 ~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D---~~I~Vda~~d~~~~R~ 244 (321)
T 3tqc_A 168 KSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD---FSLFVDAQAQVIQKWY 244 (321)
T ss_dssp HTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS---EEEEEECCHHHHHHHH
T ss_pred hccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC---eEEEEECCHHHHHHHH
Confidence 4444 25777755443221 011111 1123 3889999999999999
Q ss_pred Hhccc
Q 004319 123 VKRIE 127 (761)
Q Consensus 123 ~~R~~ 127 (761)
.+|..
T Consensus 245 i~Rd~ 249 (321)
T 3tqc_A 245 IDRVL 249 (321)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99974
No 174
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.92 E-value=4e-05 Score=78.82 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+|.+|.|.|+|||||||+++.|++.++ +.+++.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG--ARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCCcH
Confidence 567999999999999999999999998 677887766
No 175
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.90 E-value=4.7e-05 Score=76.28 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----CC----------CCCc--HH-----------------
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KG----------KSGT--KV----------------- 65 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----~~----------~~~~--~~----------------- 65 (761)
..+|.|.|++||||||+++.|++.++ +.+++.+.+. .| +... ..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg--~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN--IPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT--CCEECHHHHHHTTCC---------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC--cCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 35899999999999999999999999 5557755432 01 0000 00
Q ss_pred HHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 66 QCLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 66 ~~~~~~~~~L~--~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.....+.+.+. ...++|+++.-. .++ ++.. .....|||.+|.+++.+|+.+|..
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g------~~v-l~~~-~~~~~V~L~A~~e~r~~R~~~~~~ 139 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCA------EEI-LSDN-PNMISAFILGDKDTKTKRVMEREG 139 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTH------HHH-TTTC-TTEEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCc------chh-cCCC-CCeEEEEEECCHHHHHHHHHHHhC
Confidence 12244445566 667888888321 121 2221 135689999999999999987743
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.89 E-value=3.4e-05 Score=77.11 Aligned_cols=120 Identities=24% Similarity=0.236 Sum_probs=69.5
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC--------------CCC--CcHHHHHHHHHHHHHC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK--------------GKS--GTKVQCLTSASSALKK 77 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~--------------~~~--~~~~~~~~~~~~~L~~ 77 (761)
..+..+|.|+|++||||||+++.|+..+. .....+..|.+.- +.. .....+... ...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~ 97 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL-CHALKH 97 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH-HHHHhc
Confidence 35678999999999999999999987764 2355666654420 000 011112222 222322
Q ss_pred C--------------------------CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319 78 G--------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (761)
Q Consensus 78 g--------------------------~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~ 130 (761)
+ +.+|+|+..+-... ..|..+ ...+. .+++++|.+++.+|+.+|....+
T Consensus 98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de-~~~~~l~~~~d~---~i~vd~~~~~~~~R~~~R~~~~g 173 (208)
T 3c8u_A 98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA-PGWRDLTAIWDV---SIRLEVPMADLEARLVQRWLDHG 173 (208)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCS-TTGGGGGGTCSE---EEEECCCHHHHHHHHHHHHHHTT
T ss_pred CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCC-chhHHHHHhcCE---EEEEeCCHHHHHHHHHHHHHhcC
Confidence 2 45788884431111 012223 22333 88999999999999999964322
Q ss_pred CCCCCChHHHHHHHH
Q 004319 131 NLQGGKAAAVVNRML 145 (761)
Q Consensus 131 ~~~~~v~~~vI~r~~ 145 (761)
...+++..++.
T Consensus 174 ----~t~~~~~~~~~ 184 (208)
T 3c8u_A 174 ----LNHDAAVARAQ 184 (208)
T ss_dssp ----CCHHHHHHHHH
T ss_pred ----CCHHHHHHHHH
Confidence 34455555544
No 177
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.88 E-value=1.1e-05 Score=82.36 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=55.4
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEE-Eec-----------ccccC-CCCCcHHHH----------H
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWAR-ICQ-----------DTINK-GKSGTKVQC----------L 68 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~-I~~-----------D~i~~-~~~~~~~~~----------~ 68 (761)
....+.+|++.|++||||||+++.|.+.+.. .... ... +.+.+ .......+. .
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999876542 3333 111 11111 112222221 1
Q ss_pred -HHHHHHHHCCCcEEEeCCCCC------------HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319 69 -TSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (761)
Q Consensus 69 -~~~~~~L~~g~~VIID~tn~~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~ 126 (761)
+.+..+|..|..||.|....+ .++-..+..+ .. -.+=.+|+|++|.+++.+|+ +|.
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rd 166 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKN 166 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC------------
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccC
Confidence 235567889999999994321 1222222222 22 12335899999999999998 443
No 178
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.82 E-value=1.9e-05 Score=79.21 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=25.2
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...+..+|+|+||+||||||+++.|.+.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334567999999999999999999998764
No 179
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.80 E-value=2.9e-05 Score=82.30 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=30.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK 58 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~ 58 (761)
++.+|.|.|++||||||+|+.|++.++ ..+.+|+.|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 456899999999999999999998765 4467899988863
No 180
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.78 E-value=9.5e-05 Score=79.55 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=32.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
++.+|+|+|++||||||+|+.|++.++ +.+|+.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP--CELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence 567999999999999999999999998 778888765
No 181
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=97.75 E-value=2.2e-06 Score=83.23 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=45.3
Q ss_pred ccccccccccc-cccccccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHH
Q 004319 238 CLEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (761)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~ 306 (761)
..+++|.+++- |+. ......++.-.+.++. .....+++|||||+||||+||||++++++++.+++.+
T Consensus 83 ~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~-~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 83 GRYIYYLITKKRASH-KPTYENLQKSLEAMKS-HCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHH-HHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEecCCCCCC-CChHHHHHHHHHHHHH-HHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 47899999887 432 2121112222333332 3344588999999999999999999999998776553
No 182
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.75 E-value=7.5e-05 Score=76.20 Aligned_cols=100 Identities=6% Similarity=0.004 Sum_probs=63.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------------CCCCc---------------------
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GKSGT--------------------- 63 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------------~~~~~--------------------- 63 (761)
..+|.|.|.+||||||+|+.|++.++ +.+++.|.+.. ++...
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG--IHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHCC------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC--CcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 46899999999999999999999999 66688766520 00000
Q ss_pred ------HHH---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319 64 ------KVQ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (761)
Q Consensus 64 ------~~~---~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~ 127 (761)
.+. ....+.+.|....++||+++... . .+.. +. ......|||++|.+++.+|+.+|..
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg--~---vl~~~~~-~~~~~~VfL~A~~e~r~~Ri~~~~~ 159 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAG--Y---VLDQDED-IERLIRIFVYTDKVKKVQRVMEVDC 159 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHH--H---HHHHCTT-CCEEEEEEEECCHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcc--h---hcccccC-CCCeEEEEEECCHHHHHHHHHHhcC
Confidence 001 11233444544457777764321 1 1111 11 1345689999999999999988754
No 183
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.65 E-value=4.7e-05 Score=77.38 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=64.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec---c-c----c----cCC--CCCcHHH----------HHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ---D-T----I----NKG--KSGTKVQ----------CLTSASSA 74 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~---D-~----i----~~~--~~~~~~~----------~~~~~~~~ 74 (761)
+..+|++.|++||||||+++.|.+.++.....+.. + . + .+. ....+.. ..+.+..+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~pa 83 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD 83 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999998743222221 0 0 1 111 1111111 12356677
Q ss_pred HHCCCcEEEeCCCCCHHHH----------HHHHH-hCCCCc-eEEEEEE-eCCHHHHHHHHHhc
Q 004319 75 LKKGKSVFLDRCNLEREQR----------TDFVK-LGGPEV-DVHAVVL-DLPAKLCISRSVKR 125 (761)
Q Consensus 75 L~~g~~VIID~tn~~~~~R----------~~~~~-l~~~~~-~v~vV~L-d~p~e~~~~R~~~R 125 (761)
|..|..||.|....+.--. ..|+. +..... +=.+|+| ++|.+++.+|...|
T Consensus 84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~ 147 (216)
T 3tmk_A 84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG 147 (216)
T ss_dssp HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence 8899999999944332110 11222 211111 2368899 99999999886544
No 184
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=97.64 E-value=4e-06 Score=80.38 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=44.8
Q ss_pred ccccccccccc-cccccccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHH
Q 004319 238 CLEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (761)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~ 305 (761)
+.+++|.+++- |.. ......++.-.+.++. .....+++|||||+||||+||||++++++++.+++.
T Consensus 72 ~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~-~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~ 138 (149)
T 2eee_A 72 GRYIYYLITKKRASH-KPTYENLQKSLEAMKS-HCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE 138 (149)
T ss_dssp SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHH-HHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHH-HHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 57899999887 432 2121112222333333 333457899999999999999999999999876554
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.63 E-value=0.00038 Score=69.10 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=31.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
.++.+|.|+|++||||||+++.|+..++..+.++++|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 3567899999999999999999998765235567887653
No 186
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.55 E-value=0.00028 Score=75.13 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=30.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i 56 (761)
..+.+|.|+|++||||||+++.|...++ ..+.+++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5668999999999999999999987654 23556666654
No 187
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.49 E-value=0.00031 Score=75.99 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=32.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
++.+|+|+|++||||||+|+.|++.++ ..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 346999999999999999999999998 778998876
No 188
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.47 E-value=0.0011 Score=71.07 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+.+|+|+||+||||||+|..|++.++ ..+|+.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence 46899999999999999999999987 778888865
No 189
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.46 E-value=0.00053 Score=70.22 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=31.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCC--------CeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~--------~~~~I~~D~i~ 57 (761)
.+..+|.|+|++||||||+++.|+..++. ....+.+|.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY 70 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence 35679999999999999999999987762 23357777653
No 190
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.45 E-value=0.0014 Score=65.94 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=74.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc--------cCC-----------------------------CC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--------NKG-----------------------------KS 61 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i--------~~~-----------------------------~~ 61 (761)
+..++.|+|++||||||+++.|...+. ....+..+.. +++ .+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY 100 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccC
Confidence 346899999999999999999987652 0111221110 000 00
Q ss_pred CcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHH
Q 004319 62 GTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAA 139 (761)
Q Consensus 62 ~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~ 139 (761)
+.. ...+.+.+..+..+++|. .+...++.+ .. . ......+++ ..+..++.+|...|... ..+.
T Consensus 101 g~~---~~~i~~~l~~~~~~il~~-~lsggq~qR--~~i~--~~~~~~~ll~~~~~~~Lde~~~~~d~~-------~~~~ 165 (218)
T 1z6g_A 101 GTL---KSEYDKAKEQNKICLFEM-NINGVKQLK--KSTH--IKNALYIFIKPPSTDVLLSRLLTRNTE-------NQEQ 165 (218)
T ss_dssp EEE---HHHHHHHHHTTCEEEEEE-CHHHHHHHT--TCSS--CCSCEEEEEECSCHHHHHHHHHHTCCC-------CHHH
T ss_pred CCc---HHHHHHHHhCCCcEEEEe-cHHHHHHHH--HHhc--CCCcEEEEEeCcCHHHHHHHHHhcCCC-------CHHH
Confidence 000 134566777788888873 333222221 11 1 011124444 57789999999888652 3333
Q ss_pred HHHHHHhhhcCCCc--cCCceEEEEcCChhhHHHHHH
Q 004319 140 VVNRMLQKKELPKL--SEGFSRITLCQNENDVQAALD 174 (761)
Q Consensus 140 vI~r~~~~~e~P~~--~EgFd~V~vv~~~~ei~~~l~ 174 (761)
+..++......-.. ...|+.|++.++.+++...+.
T Consensus 166 i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~ 202 (218)
T 1z6g_A 166 IQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK 202 (218)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence 33333322111001 267899988887655544433
No 191
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.45 E-value=0.00011 Score=75.16 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
++.+|++.|++||||||+++.|++.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999999984
No 192
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.41 E-value=0.0022 Score=68.50 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=33.1
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
..+|.+|+|+||+||||||+|..|++.++ ..+|+.|..
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 44 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILP--VELISVDSA 44 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCC--CcEEecccc
Confidence 34678999999999999999999999988 677888764
No 193
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.38 E-value=0.0002 Score=72.72 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.+..+|.|.|+.||||||+++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999999876
No 194
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.35 E-value=0.00029 Score=74.45 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=38.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ 66 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~ 66 (761)
..|..++|.|+||+|||++|+.+++.++.++..++...+...+.+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~ 82 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAK 82 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHH
Confidence 4567899999999999999999999999888888877776666554443
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00047 Score=76.20 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=47.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~ 76 (761)
.|.=|+|.||||+|||++|++++..++.++..++...+...+.+..+..++.+....+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH
Confidence 3556999999999999999999999998888888888888888877766655544443
No 196
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.00077 Score=69.98 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=47.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC 86 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~t 86 (761)
.+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+...+... ..++||-.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECH
Confidence 445689999999999999999999999778778777776665555444444333333333 34677763
No 197
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00064 Score=75.60 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=48.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK 77 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~ 77 (761)
.|.=|+|.||||+|||++|++++..++.++..++...+...+.+..+..+..+....+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence 45679999999999999999999999988888888888888888777666555544443
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00071 Score=75.66 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=46.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~ 76 (761)
.|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....+..+....+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH
Confidence 4567999999999999999999999998888888888888888877665554444443
No 199
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00063 Score=76.04 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=46.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~ 73 (761)
+.|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....++.+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~ 268 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFA 268 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHH
Confidence 34667999999999999999999999998888888888888888877665544443
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00078 Score=75.15 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=44.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~ 73 (761)
.|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....+..+..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~ 259 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFR 259 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHH
Confidence 4556999999999999999999999998888888888877777776665544443
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00087 Score=75.20 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=47.4
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL 75 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L 75 (761)
..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+.....++.+....
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH
Confidence 3566799999999999999999999999888888888888888887766655444443
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.02 E-value=0.0012 Score=68.98 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=46.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-H-CCCcEEEeCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-K-KGKSVFLDRC 86 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~-~g~~VIID~t 86 (761)
.+.-++|.|+||+||||+|+.++..++..+..++...+.....+........+.... . ....++||-.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence 356789999999999999999999998777777776665555554444333333322 2 3345778863
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.001 Score=71.18 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=31.6
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i 56 (761)
..++.+|.|+|++||||||+++.|...+. .....+.+|..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 45678999999999999999999987543 23566777655
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.88 E-value=0.0018 Score=66.41 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~ 60 (761)
+.-++|+|+||+||||+|+.++..++.++..++...+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 34488999999999999999999988777777766554433
No 205
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.86 E-value=0.0022 Score=65.37 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=44.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH-HHHHC-CCcEEEeCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS-SALKK-GKSVFLDRCN 87 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~-~~L~~-g~~VIID~tn 87 (761)
.+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+. .+... +..++||...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid 108 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEID 108 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcc
Confidence 345688999999999999999999999888777766654433333322222222 22222 3346777743
No 206
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.78 E-value=0.0015 Score=69.62 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC 86 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~t 86 (761)
+.-++|.|+||+|||++|+.++...+..+..++...+...+.+.....+..+....... ..++||-.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechh
Confidence 45699999999999999999999999778788877776666666555444443333322 35677873
No 207
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.76 E-value=0.0013 Score=71.27 Aligned_cols=67 Identities=16% Similarity=0.319 Sum_probs=43.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC 86 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~t 86 (761)
+.-|+|.|+||+|||++|+.++..++.++..++...+...+.+.....+..+..... ....++||-.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi 152 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 152 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEech
Confidence 345888999999999999999999997777777666655554443343333333332 3345777863
No 208
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.002 Score=68.94 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=45.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC 86 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~t 86 (761)
.+.-|+|.|+||+|||++|+.++..+ +..+..++...+...+.+.....+..+..... ....++||-.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEi 114 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 114 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecH
Confidence 34678999999999999999999988 66676777666655555544444433333332 2335777863
No 209
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.73 E-value=0.0026 Score=68.90 Aligned_cols=67 Identities=15% Similarity=0.322 Sum_probs=47.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~ 85 (761)
.+.-|+|.|+||+||||+|+.++..++..+..++...+...+.+........+..... .+..++||-
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE 184 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE 184 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4567899999999999999999999987777787777665555544444433333332 234577886
No 210
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.71 E-value=0.0063 Score=64.51 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..+.+|+|+|| ||+|+.++|.+.+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence 34568899997 79999999998764
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.68 E-value=0.00065 Score=65.76 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=46.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCCCcHHH-HHHHHHHHHHCCCcEEEeCC---CCCHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRC---NLERE 91 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~~~~~~-~~~~~~~~L~~g~~VIID~t---n~~~~ 91 (761)
...++|+|+||+||||+++.++..+ +.....++...+.+........ ....+...+.....+|+|-. .....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~ 117 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDW 117 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHH
Confidence 4678999999999999999988664 4334445543331100000000 00123345567778999985 35566
Q ss_pred HHHHHHHh
Q 004319 92 QRTDFVKL 99 (761)
Q Consensus 92 ~R~~~~~l 99 (761)
.+..+..+
T Consensus 118 ~~~~l~~l 125 (180)
T 3ec2_A 118 QRELISYI 125 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 212
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.67 E-value=0.0043 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+-.++.|+|++||||||+.+.|...+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446899999999999999999987763
No 213
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.65 E-value=0.0062 Score=63.74 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=45.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~-------~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
...-++|.|+||+||||+|+.+++.+. .++..++...+.....+........+.... .+..+|||-..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid 140 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAY 140 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-CCCEEEEEChh
Confidence 344689999999999999999887763 257777777665555554433332222222 45678888753
No 214
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=96.61 E-value=0.00071 Score=65.26 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=41.2
Q ss_pred cccccccccc-ccccccc-ccCCCCcccccccc---CCCCCCCCeeecccccccCCCCCHHHHHHHHHHHH
Q 004319 239 LEGQEITSLL-SDAAGEE-VKGTENPEVASVNQ---NGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV 304 (761)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v 304 (761)
-++.|.+++. |+..++. .....+.++.|+.. .....+. |||||+||||+||||++++++++.++.
T Consensus 77 ~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l 146 (158)
T 2fg1_A 77 LYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEEL 146 (158)
T ss_dssp EEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHT
T ss_pred eEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHh
Confidence 7889999988 5422211 11122234444432 1222244 999999999999999999999865543
No 215
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.57 E-value=0.0045 Score=68.38 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=30.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
+.+|+|+||+||||||+|..|++.++ ..+|+.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence 45899999999999999999999998 67788876
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.55 E-value=0.0033 Score=65.77 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=41.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-HC-CCcEEEeCC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KK-GKSVFLDRC 86 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~~-g~~VIID~t 86 (761)
++|+|+|||||||+++.++...+..+..++...+...+.+.....+..+.+.. .. ...+++|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Dei 112 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV 112 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehh
Confidence 89999999999999999999888656666665554443333333333333332 22 234566763
No 217
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.54 E-value=0.0029 Score=60.16 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..+..++|+|+||+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999999875
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.52 E-value=0.0089 Score=66.85 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=32.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
.+|.+|+++|++|+||||++.+|+..+ +.....++.|.++
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 358999999999999999999988654 4566778877653
No 219
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.50 E-value=0.014 Score=60.12 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=31.1
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
...+.-++|.|+||+||||+|+.++...+.++..++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence 4456789999999999999999999998877766643
No 220
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.49 E-value=0.0082 Score=63.96 Aligned_cols=129 Identities=11% Similarity=0.049 Sum_probs=72.5
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE---ecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHH
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI---CQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I---~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R 93 (761)
...+..|||+|| ||+|+.++|.+.++..|..- +.| +.++.+.+ ...+.+.+..|+.+|+|- +.
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~~r~-i~~~~fis----~~~V~~vl~~Gk~~ILDI------d~ 207 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETVSRT-DSPSKIIK----LDTVRVIAEKDKHALLDV------TP 207 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------CCC----HHHHHHHHHTTCEEEECC------CH
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccccccc-ccCCCeec----HHHHHHHHHCCCcEEEEE------CH
Confidence 344556889999 79999999999988655432 223 33444442 356778889999999998 44
Q ss_pred HHHHHh-CCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCceEEE-EcCChhh
Q 004319 94 TDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRIT-LCQNEND 168 (761)
Q Consensus 94 ~~~~~l-~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-e-~P~~~EgFd~V~-vv~~~~e 168 (761)
+....+ ...-..+ +||+. .+.+++.+| ..|.... . ++.+.+++... + +-.....||.|+ +.++.++
T Consensus 208 QGa~~lk~~~~~pi-~IFI~PPS~eeL~~r-r~R~~~e------s-ee~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~ 278 (308)
T 3kfv_A 208 SAIERLNYVQYYPI-VVFFIPESRPALKAL-RQWLAPA------S-RRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDT 278 (308)
T ss_dssp HHHHHHHHTTCCCE-EEEEEESCHHHHHHH-HHHHSTT------C-CCCHHHHHHHHHHHHHHHGGGCSEEEEECSSSTH
T ss_pred HHHHHHHhcCCCCE-EEEEeCCCHHHHHHH-HhcCCCC------C-HHHHHHHHHHHHHHHHhhhccCcEEEEcCCCHHH
Confidence 444444 2222333 55555 556777776 5554311 1 12345554432 1 111235699998 5554443
No 221
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.48 E-value=0.0046 Score=66.75 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+...|++-|+-||||||+++.|++.++
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999998876
No 222
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.43 E-value=0.0029 Score=67.11 Aligned_cols=134 Identities=14% Similarity=0.180 Sum_probs=72.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE-Ee---------------------cccc----cCCCCCcHHH-----
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR-IC---------------------QDTI----NKGKSGTKVQ----- 66 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~-I~---------------------~D~i----~~~~~~~~~~----- 66 (761)
+....|||+|| ||+|+.++|.+.++..+.. |+ .+.+ .++.+..+.+
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 34567888887 5999999999987633311 11 1100 0111110000
Q ss_pred ---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 67 ---~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
....+.+.+..|+.+|+|.. .+....++.......+||+.+| .+++.+|+..|.. +..+....
T Consensus 175 YGT~~~~V~~~~~~gk~viLdid------~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~-------e~~~~~~~ 241 (292)
T 3tvt_A 175 YGTSVASVREVAEKGKHCILDVS------GNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE-------EQAKKTYE 241 (292)
T ss_dssp EEEEHHHHHHHHHHTCEEEECCC------THHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT-------THHHHHHH
T ss_pred eEEehHHHHHHHHcCCcEEEecc------chhhhhcccccccceEEEEECCCHHHHHHHHhCCCc-------hhHHHHHH
Confidence 12466788899999999983 2333333112223456777664 6777777655543 23345555
Q ss_pred HHHhhhcCCCccCCceEEEEcCChhhH
Q 004319 143 RMLQKKELPKLSEGFSRITLCQNENDV 169 (761)
Q Consensus 143 r~~~~~e~P~~~EgFd~V~vv~~~~ei 169 (761)
++.+.-. ...+-||.|++.++.++.
T Consensus 242 r~~k~e~--e~~~~fD~vIvNddle~a 266 (292)
T 3tvt_A 242 RAIKMEQ--EFGEYFTGVVQGDTIEEI 266 (292)
T ss_dssp HHHHHHH--HHTTTCSEEECCSSHHHH
T ss_pred HHHHHHH--hhhhhCCEEEECcCHHHH
Confidence 5433211 123558988776654443
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.37 E-value=0.0047 Score=63.10 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~ 57 (761)
++|+|+||+||||+++.++...+..+..++...+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 89999999999999999999887667667654443
No 224
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.34 E-value=0.0039 Score=68.27 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=42.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-HCC-CcEEEeCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KKG-KSVFLDRC 86 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~~g-~~VIID~t 86 (761)
+.-++|.|+||+|||++|+.++..++..+..++...+.....+.....+..+...+ ... ..++||-.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQV 216 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 45789999999999999999999999777777776665444433333333332222 333 35778875
No 225
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.33 E-value=0.0038 Score=71.17 Aligned_cols=62 Identities=5% Similarity=0.092 Sum_probs=44.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL 88 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~-----~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~ 88 (761)
...+|+|+|++||||||+|+.|++.++. .+.+++.|. . ......+...++.|..||+...+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~--~------~ei~~va~~~~~~G~~Vv~~~~sp 460 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN--K------TELLSLIQDFIGSGSGLIIPDQWE 460 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT--C------HHHHTTHHHHHHTTCEEEESSCCC
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC--c------HHHHHHHHHHHhcCCeEEEecCCH
Confidence 4579999999999999999999999873 346677776 1 112233445556777777766444
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.31 E-value=0.0033 Score=59.68 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
....++|+|++||||||+++.++... +.....++...+... ..+.....+|||-..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DAAFEAEYLAVDQVE 93 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GGGGGCSEEEEESTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HHHhCCCEEEEeCcc
Confidence 34578899999999999999998765 444555665444322 113445667888743
No 227
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.28 E-value=0.032 Score=55.91 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=60.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEec-ccccC------CC----------CCc-HH-HHH---HHHH--
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQ-DTINK------GK----------SGT-KV-QCL---TSAS-- 72 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~-D~i~~------~~----------~~~-~~-~~~---~~~~-- 72 (761)
.++.||+++|.|||||+|+|+.+.+.++. .+..++. |.+++ |. +.. .. ... +.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999887752 2445553 43321 10 000 00 110 1111
Q ss_pred -------HHHH--CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHH
Q 004319 73 -------SALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (761)
Q Consensus 73 -------~~L~--~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~ 122 (761)
.++. ....||||+ -........+.+. .+..+.+|.+.++.++..+|.
T Consensus 89 d~~~~~~~~~~~~~~~~vII~d-vR~~~Ev~~fr~~--~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSD-TRRVSDIQWFREA--YGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECC-CCSHHHHHHHHHH--HGGGEEEEEEEECHHHHHHTT
T ss_pred CchHHHHHHHHhcCCCcEEEeC-CCCHHHHHHHHHh--CCCcEEEEEEECCHHHHHHHh
Confidence 1111 123589998 4555555555443 234577899999999999884
No 228
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.26 E-value=0.0031 Score=60.05 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+..++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34567999999999999999999876
No 229
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.01 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++|.|+||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998864
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.22 E-value=0.0047 Score=73.97 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=48.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCC-c-EEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK-S-VFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~-~-VIID~ 85 (761)
.|.=|+|.||||+|||++|++++..++..+..++...+...+.+..+..+..+.+...... + ++||-
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence 4667999999999999999999999997777787767766666666665554444443322 2 44454
No 231
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.21 E-value=0.013 Score=54.78 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC-CCHHHHHHHH
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV 97 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn-~~~~~R~~~~ 97 (761)
-|+|.|+||+|||++|+.+.... +.++. ++...+.+. ......+. ...+..++||... +.......+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~-----~a~~g~l~ldei~~l~~~~q~~Ll 97 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIA-----LAQGGTLVLSHPEHLTREQQYHLV 97 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHH-----HHTTSCEEEECGGGSCHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHH-----HcCCcEEEEcChHHCCHHHHHHHH
Confidence 47899999999999999998875 34566 654444322 11111111 1356678888854 3344444455
Q ss_pred Hh
Q 004319 98 KL 99 (761)
Q Consensus 98 ~l 99 (761)
..
T Consensus 98 ~~ 99 (145)
T 3n70_A 98 QL 99 (145)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 232
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.21 E-value=0.002 Score=68.01 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=29.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
..+.-++|.|+||+||||+|+.++..++..+..++.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 345678999999999999999999998866655554
No 233
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.20 E-value=0.008 Score=67.93 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~ 62 (761)
.=++|+|+||+||||+|+.++...+.++..++...+.+...+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 348899999999999999999999988888876665444333
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.013 Score=65.41 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=31.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
.+|.+|+++|++||||||++.+|+..+ +.....++.|.+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 358999999999999999999987543 456667787755
No 235
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.12 E-value=0.0093 Score=65.73 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=73.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH---HHHHHHHHHHCCCcEEEeCCCCCHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ---CLTSASSALKKGKSVFLDRCNLEREQRT 94 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~---~~~~~~~~L~~g~~VIID~tn~~~~~R~ 94 (761)
+.+.+|||+||+| +|+.++|.+.++..+.. ..-.-+.++..-... -...+.+.+..|+.+|+|- +-+
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~-~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdI------d~q 299 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI-AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TPN 299 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE-CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCEEEECC------CHH
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcccccc-ccCCCCCcccCCccCCcCcHHHHHHHHHcCCEEEEEe------CHH
Confidence 4567899999997 89999999987744432 211112222110011 2367788889999999998 333
Q ss_pred HHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCceEEEEcCChh
Q 004319 95 DFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRITLCQNEN 167 (761)
Q Consensus 95 ~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-e-~P~~~EgFd~V~vv~~~~ 167 (761)
....+ ...-.. .+||+.+| .+++.+| ..|.... . ++.+.++++.. + +-....-||.|++.++.+
T Consensus 300 g~~~l~~~~~~p-~~IFI~PPS~~~L~~~-~~r~~~~------s-~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~ 367 (391)
T 3tsz_A 300 AVDRLNYAQWYP-IVVFLNPDSKQGVKTM-RMRLCPE------S-RKSARKLYERSHKLRKNNHHLFTTTINLNSMN 367 (391)
T ss_dssp HHHHHHHTTCCC-EEEEEECCCHHHHHHH-HHHHCSS------C-CCCHHHHHHHHHHHHHHHGGGCSEEEECCTTC
T ss_pred HHHHHHhCCCCC-EEEEEeCcCHHHHHHH-HhcCCCC------C-HHHHHHHHHHHHHHHHhccccCcEEEECCCcH
Confidence 33333 222223 45666654 6777665 5554311 1 22344444332 1 111235689998877654
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.08 E-value=0.005 Score=69.03 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=38.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQ 66 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~ 66 (761)
+.-++|.|+||+|||++|+.++..++ .++..++...+...+.+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV 111 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence 35688999999999999999999998 678778877777666665554
No 237
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.05 E-value=0.008 Score=68.20 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=46.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCC--cEEEeC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR 85 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~--~VIID~ 85 (761)
.+.-++|.|+||+|||++|+.++..++.++..++...+.....+.....+..+......+. .++||-
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDE 305 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE 305 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecc
Confidence 4456899999999999999999999987788887766655555544443333333333332 466776
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.05 E-value=0.0065 Score=65.23 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=40.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec--ccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~--D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn 87 (761)
..+++|.|+||+||||||.+++...+....+++. ++..+......+..+..+.+.+...+.+|||...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~ 192 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK 192 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence 3577999999999999999998764433233443 1111111123344445555555544488999843
No 239
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.96 E-value=0.005 Score=65.10 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEE-ecccc
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARI-CQDTI 56 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-----~~~~I-~~D~i 56 (761)
....+.+|.|+|++||||||+++.|...++. ....+ ++|.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3457889999999999999999999876642 23445 88876
No 240
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.95 E-value=0.0078 Score=64.00 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC-CCHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFVK 98 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn-~~~~~R~~~~~ 98 (761)
+.-++|.|+||+||||+|+.+++.++.++..++...+. .. ..+..+...+..+..++||-.. +.......++.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~ 128 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-----KS-GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYP 128 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----SH-HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----ch-hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHH
Confidence 34589999999999999999999998777777765542 11 1122222334456678888754 33344444444
Q ss_pred h
Q 004319 99 L 99 (761)
Q Consensus 99 l 99 (761)
.
T Consensus 129 ~ 129 (338)
T 3pfi_A 129 A 129 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.92 E-value=0.012 Score=60.98 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
++|+|+|||||||+++.++...+..+..++...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 8999999999999999999988766766665444
No 242
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.90 E-value=0.0056 Score=68.90 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=78.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHH---HHHHHHHHHHHCCCcEEEeCCCCCHHHHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---QCLTSASSALKKGKSVFLDRCNLEREQRT 94 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~---~~~~~~~~~L~~g~~VIID~tn~~~~~R~ 94 (761)
..+.+|||+||+|+| +.++|.+.++..+...-.- -+.++..-.. .-...+.+.+..|+.+|+|- +-+
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdI------d~q 291 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIAKSE-PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TPN 291 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCCB-C----------CBCCHHHHHHHHTTTCEEEECC------CHH
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceeeecCC-CCCcccccccCCcccHHHHHHHHHCCCeEEEEe------CHH
Confidence 456789999999999 9999998877444322111 1222110001 12367788899999999998 333
Q ss_pred HHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--CCCccCCceEEEEcCCh--hh
Q 004319 95 DFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRITLCQNE--ND 168 (761)
Q Consensus 95 ~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--~P~~~EgFd~V~vv~~~--~e 168 (761)
....+ ...-.. .+||+.+| .+++.+| .+|... +. ++.+.++++... +-....-||.|++.++. ..
T Consensus 292 g~~~l~~~~~~p-~~IFI~PPS~e~L~~~-~~rl~~------~s-ee~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d~a 362 (468)
T 3shw_A 292 AVDRLNYAQWYP-IVVFLNPDSKQGVKTM-RMRLCP------ES-RKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW 362 (468)
T ss_dssp HHHHHHHTTCCC-EEEEEECSCHHHHHHH-HHHHCT------TC-CCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBCHH
T ss_pred HHHHHHhcCCCC-EEEEEeCcCHHHHHHH-HhccCC------CC-HHHHHHHHHHHHHHHHhhhccCCEEEECCCcHHHH
Confidence 33333 112222 46666665 5666553 444321 11 224444444321 11224569999887765 23
Q ss_pred HHHHHHHhhcc-CCCcccc
Q 004319 169 VQAALDTYSGL-GPLDTLP 186 (761)
Q Consensus 169 i~~~l~~~~~l-gp~diig 186 (761)
+.++...+..+ .....+|
T Consensus 363 ~~~L~~ii~~~~~~~~WvP 381 (468)
T 3shw_A 363 YGALKEAIQQQQNQLVWVS 381 (468)
T ss_dssp HHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHhcCCCEEeC
Confidence 44443333222 3334444
No 243
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.80 E-value=0.0059 Score=64.77 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHH-HHHHHHHHHHHCCCcEEEeCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~-~~~~~~~~~L~~g~~VIID~t 86 (761)
+..++|.|+||+||||+++.++..+ +..+..++.+.+......... .........+.....++||-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi 107 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV 107 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence 4568999999999999999999877 666777776544211000000 001222334455677889884
No 244
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.80 E-value=0.0078 Score=63.32 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=47.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC-HHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE-REQRTDFVK 98 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~-~~~R~~~~~ 98 (761)
+..++|.|+||+||||+|+.+++.++.++..++...+. ........+...+..+..++||-...- ......+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~ 112 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYP 112 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----SHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----ChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHH
Confidence 35688999999999999999999988777666654432 122222222222445667888885443 333333443
Q ss_pred h
Q 004319 99 L 99 (761)
Q Consensus 99 l 99 (761)
.
T Consensus 113 ~ 113 (324)
T 1hqc_A 113 A 113 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.79 E-value=0.0051 Score=68.81 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=29.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK 58 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~ 58 (761)
.+.-|+|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 34578999999999999999999998 66666676655543
No 246
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.78 E-value=0.0058 Score=60.81 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=29.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i 56 (761)
....++|+|+||+||||+++.++..+. ..+..++.+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456789999999999999999987654 44556665444
No 247
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.77 E-value=0.0068 Score=59.71 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+++++|.+||||||||++++.. +.+..++.....
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 4799999999999999999977 666667766443
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.76 E-value=0.013 Score=63.58 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
+.-++|+|+||+||||+|+.+++.++.++..++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence 3458999999999999999999999877777766554
No 249
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.76 E-value=0.03 Score=59.47 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=70.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEec-----ccccCCCCCcHHHHHHHHHHHH-HCCCcEEEeCCCCCH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQ-----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER 90 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~-----D~i~~~~~~~~~~~~~~~~~~L-~~g~~VIID~tn~~~ 90 (761)
+.+.+|++=|.-||||||.+++|.+.+. +.+.++.. ..++ .+ .+......| ..|..+|.|.+-+..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~-~~------yl~R~~~~LP~~G~IvIfDRswYs~ 156 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG-QW------YFQRYVATFPTAGEFVLFDRSWYNR 156 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT-SC------TTHHHHTTCCCTTCEEEEEECGGGG
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh-ch------HHHHHHHhcccCCeEEEEECCcchH
Confidence 4689999999999999999999999886 33333321 1111 11 113344555 789999999955443
Q ss_pred H--HH-----------HHHHHh-------CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319 91 E--QR-----------TDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (761)
Q Consensus 91 ~--~R-----------~~~~~l-------~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~ 128 (761)
. +| ..+..+ ...|+.+..+||++|.++..+|+.+|...
T Consensus 157 v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d 214 (304)
T 3czq_A 157 AGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD 214 (304)
T ss_dssp TTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence 2 11 122222 23567888999999999999999888653
No 250
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.74 E-value=0.034 Score=66.03 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=68.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEE-ecccc----cCCCCCcHHH------
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARI-CQDTI----NKGKSGTKVQ------ 66 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~---------------------~~I-~~D~i----~~~~~~~~~~------ 66 (761)
...+|+|+|| ||+|+.++|.+.+...+ .++ +.+.+ .++.+..+.+
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 4578999998 39999999998754111 112 22111 1111111100
Q ss_pred --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHH
Q 004319 67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN 142 (761)
Q Consensus 67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~ 142 (761)
-...+.+.+..|+.+|+|. ++.....+ ...-+. .+||+.+|. +++.+ +..|... +++-.
T Consensus 607 Gt~~~~v~~~~~~g~~~ildi------~~~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t~---------~~~~~ 669 (721)
T 2xkx_A 607 GTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITE---------EQARK 669 (721)
T ss_pred eeeHHHHHHHHHCCCcEEEeC------CHHHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCCH---------HHHHH
Confidence 1245778889999999998 33433333 112222 577787664 55544 7666531 23223
Q ss_pred HHHhhh-cCCCccCCceEEEEcCChhh
Q 004319 143 RMLQKK-ELPKLSEGFSRITLCQNEND 168 (761)
Q Consensus 143 r~~~~~-e~P~~~EgFd~V~vv~~~~e 168 (761)
++.+.. .+-...+.|+.|++.++.++
T Consensus 670 rl~~a~~~e~~~~~~fd~vi~Nd~l~~ 696 (721)
T 2xkx_A 670 AFDRATKLEQEFTECFSAIVEGDSFEE 696 (721)
T ss_pred HHHHHHHHHHhccccCcEEEECcCHHH
Confidence 333221 12223456888866654333
No 251
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.72 E-value=0.047 Score=62.09 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=30.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
.++.+|+|+|+||+||||++.+|+..+ +.....++.|..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 457799999999999999999998654 5567778877643
No 252
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.72 E-value=0.0074 Score=63.83 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=47.0
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH------CCCcEEEeCCCCC--
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLE-- 89 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~------~g~~VIID~tn~~-- 89 (761)
..|.++++.|+||+||||+++.+++.++..+..++.... . .......+..... ..+.+|||-...-
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~ 119 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL 119 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc
Confidence 445688999999999999999999998855555554332 1 2222223333333 2345788885543
Q ss_pred HHHHHHHHHh
Q 004319 90 REQRTDFVKL 99 (761)
Q Consensus 90 ~~~R~~~~~l 99 (761)
......+...
T Consensus 120 ~~~~~~L~~~ 129 (324)
T 3u61_B 120 AESQRHLRSF 129 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444455554
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.70 E-value=0.0066 Score=65.66 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=31.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
.+.-++|.|+||+|||++|+.+++.++.++..++.-.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 34568899999999999999999999877877765444
No 254
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.70 E-value=0.023 Score=60.07 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=30.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i 56 (761)
++.+++|+|++||||||++..|+..+ |.....++.|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 56799999999999999999987543 446677888765
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.70 E-value=0.0083 Score=71.86 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g 78 (761)
|.=|+|.||||+|||.+|++++.+++.++..++...+...+.+..+..+..+.+..+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence 44588999999999999999999999777777777777777776666565555555443
No 256
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.67 E-value=0.11 Score=56.90 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=22.7
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
......|.+-|+-||||||+++.|++.+.
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556899999999999999999998764
No 257
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.55 E-value=0.016 Score=64.88 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-CCCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG 62 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-~~~~ 62 (761)
+.-|+|+|+||+||||+|+.|++.++.++..++...+.. ++.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 445899999999999999999999998887777655544 4544
No 258
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.02 Score=61.59 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999998875
No 259
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.52 E-value=0.0017 Score=66.77 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
-++|.|+||+||||+|+.++..++.++..++...+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 37899999999999999999998866655554443
No 260
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.44 E-value=0.015 Score=65.99 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=32.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~ 62 (761)
++|+|+||+||||+|+.++...+.++..++...+.+...+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g 106 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 106 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence 8999999999999999999998877877876665443333
No 261
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.43 E-value=0.0066 Score=59.53 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~ 53 (761)
..++|+|+||+||||+|+.++..+ +..+..++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 678999999999999999998765 344555554
No 262
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.022 Score=60.93 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..+..++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998876
No 263
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.38 E-value=0.021 Score=61.17 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
+..++|+|+||+||||+++.++..++..+...+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg 84 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec
Confidence 3568999999999999999999998755544444
No 264
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.38 E-value=0.019 Score=64.07 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=31.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
.+|.+|+++|+||+||||++.+|+..+ +.....++.|..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 356799999999999999999988654 3456778887553
No 265
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.38 E-value=0.014 Score=57.34 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+.+++|.|+||+||||+++.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999988764
No 266
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.30 E-value=0.014 Score=60.73 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=32.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~ 58 (761)
+.-++|.|+||+||||+|+.+++.++.++..++...+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 456889999999999999999999987787777665543
No 267
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=95.22 E-value=0.02 Score=57.87 Aligned_cols=88 Identities=10% Similarity=0.132 Sum_probs=50.2
Q ss_pred CCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc---CCHH---HHHHHHHHHHHHHHHHHHhhccCCceee
Q 004319 572 ERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD---VRNE---HLQILQTMHAVGMKWAEKFLHEDASLAF 645 (761)
Q Consensus 572 e~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d---l~~e---~l~lL~~m~~~~~~~~~~~~~~~~~~~~ 645 (761)
...|+..|.....+++|+| +..+.|+|+||. ..|+.+.+ +.+. -...-........+...+-+. +.....
T Consensus 27 ~p~PC~~Vd~~~gyvvlKD--~~Gp~qyLLmPt-~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pip-d~~lsL 102 (227)
T 2pof_A 27 NPSPCAEVKPNAGYVVLKD--LNGPLQYLLMPT-YRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVP-DRAVSL 102 (227)
T ss_dssp CCTTSSEEETTTTEEEEEC--SSSSSCEEEEES-SCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCC-GGGEEE
T ss_pred CCCCCceEccCCCEEEEeC--CCCCceEEEecc-ccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCC-ccceEE
Confidence 3457888888899999999 579999999998 45665543 3222 222222221111111111111 112233
Q ss_pred eecccCCCcccceeeeee
Q 004319 646 RLGYHSAPSMRQLHLHVI 663 (761)
Q Consensus 646 ~~G~ha~pSv~HLHlHVI 663 (761)
-++-..+-|-+||||||-
T Consensus 103 aINS~~gRSQnQLHIHIs 120 (227)
T 2pof_A 103 AINSRTGRTQNHFHIHIS 120 (227)
T ss_dssp EEBCGGGCSCCSCCEEEE
T ss_pred EecCCCCccccceeeehh
Confidence 444444569999999974
No 268
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.18 E-value=0.034 Score=59.29 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEEe
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARIC 52 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~------~~~~~~I~ 52 (761)
..+..++|+|+||+||||+++.++..+ +..+..++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 446689999999999999999998876 54455555
No 269
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.14 E-value=0.017 Score=69.36 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=45.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-H-CCCcEEEeCC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-K-KGKSVFLDRC 86 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~-~g~~VIID~t 86 (761)
.+.-|+|+|+|||||||+|+.++..++..+..++...+.....+.....+..+.+.. . ....+++|-.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 455799999999999999999999988777777766665555554444333333222 2 2335677763
No 270
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.09 E-value=0.062 Score=57.55 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEe
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARIC 52 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~ 52 (761)
.++|+|+||+||||+++.++..+. ..+..++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 799999999999999999998873 3344555
No 271
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.08 E-value=0.16 Score=56.60 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=32.5
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~ 57 (761)
.+|.+|+++|++|+||||++.+|+..+ +.....++.|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 457899999999999999999987543 6667788888654
No 272
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.08 E-value=0.023 Score=60.63 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+. ++++|++|+||||+++.++..+
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345 8999999999999999999853
No 273
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=95.03 E-value=0.095 Score=56.38 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...|.+-|+-||||||+++.|++.+.
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999987764
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.01 E-value=0.048 Score=57.70 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
+.+++++|++|+||||++..|+..+ +.....++.|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 7889999999999999999988654 456677777754
No 275
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.01 E-value=0.0094 Score=55.68 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=40.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCC-CHHHHHHHHHh
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-EREQRTDFVKL 99 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~-~~~~R~~~~~l 99 (761)
-|+|.|+||+|||++|+.+..... ++..++...+.... ...... ...+..++||.... .......+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~-~a~~~~l~lDei~~l~~~~q~~Ll~~ 98 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ-KAEGGVLYVGDIAQYSRNIQTGITFI 98 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH-HTTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH-hCCCCeEEEeChHHCCHHHHHHHHHH
Confidence 378899999999999999987665 56555543332111 111111 23456788887544 33333444443
No 276
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.93 E-value=0.015 Score=65.15 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCCCCCH-HHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCNLER-EQRTDFV 97 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~tn~~~-~~R~~~~ 97 (761)
.-++|+|+||+||||+|+.+++.++..+..++..... .......+..+..... .+..++||-...-. .....++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL 127 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL 127 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence 4589999999999999999999988666666542211 0111222233332222 34557888854433 3334444
Q ss_pred Hh
Q 004319 98 KL 99 (761)
Q Consensus 98 ~l 99 (761)
..
T Consensus 128 ~~ 129 (447)
T 3pvs_A 128 PH 129 (447)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 277
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=94.90 E-value=0.059 Score=58.45 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=62.7
Q ss_pred cCcEEEEecCCCCCC------------c-----------eEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhc
Q 004319 582 SDDVVVLNDLYPKAQ------------K-----------HILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLH 638 (761)
Q Consensus 582 dd~~vai~D~~Pka~------------~-----------H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~ 638 (761)
+-++++|..+||.-. + +++|.+. +|..++.+|+.+++..+..+.. +..++...
T Consensus 86 ~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp-~H~~~l~~ls~~e~~~vi~~~~---~~~~~L~~ 161 (351)
T 1z84_A 86 NWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESP-VHSIQLSDIDPVGIGDILIAYK---KRINQIAQ 161 (351)
T ss_dssp SCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCS-SSSCCGGGSCHHHHHHHHHHHH---HHHHHHTT
T ss_pred CceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCC-CCCCCcHHCCHHHHHHHHHHHH---HHHHHHhc
Confidence 347899999999982 2 6677776 7999999999988665444332 22222221
Q ss_pred cC----CceeeeecccCCCcccceeeeeecCCcccccccc
Q 004319 639 ED----ASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKN 674 (761)
Q Consensus 639 ~~----~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~ 674 (761)
.. ...+-|.|..++-|+.|.|.||+..+|..+....
T Consensus 162 ~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a~~~~p~~~~~ 201 (351)
T 1z84_A 162 HDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSS 201 (351)
T ss_dssp CTTCCEEEEEEEESGGGTCCCSSCEEEEEEESSCCHHHHH
T ss_pred ccCCCEEEEEEEcCcccCCCCcCccceeEecCcCChHHHH
Confidence 11 1346788888888999999999999998765543
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.87 E-value=0.02 Score=60.97 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=31.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~ 57 (761)
.++.+|+|+|++||||||++..|+..+ +.....++.|..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 467899999999999999999988654 3456667777653
No 279
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.84 E-value=0.017 Score=57.81 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
...|+|+|++||||||+|..|++... ..|+.|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH---RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC---eEEecchh
Confidence 35789999999999999999998754 56777655
No 280
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.79 E-value=0.015 Score=64.87 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccccCCCCCcHHH-HHHHHHHHHH-CCCcEEEeCC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKVQ-CLTSASSALK-KGKSVFLDRC 86 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~~~~~~~~~~-~~~~~~~~L~-~g~~VIID~t 86 (761)
+.-++|.|+||+||||+++.++... +..+..++...+.......... ........+. ....+|||-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence 4568999999999999999998766 5556666654431100000000 0112233444 5667899984
No 281
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.76 E-value=0.021 Score=56.19 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=27.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D 54 (761)
.-.+++|+|+||||||||+..++...+....+++.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 346999999999999999999987444445555543
No 282
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.70 E-value=0.17 Score=54.05 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC 52 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~ 52 (761)
+..++|.|+||+|||++|+.+++.++. ++..++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 357999999999999999999998873 454444
No 283
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.66 E-value=0.019 Score=59.92 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCCCCCcHHHHHHHHHHH--H--HCCCcEEEeCCC-CCHHH
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSA--L--KKGKSVFLDRCN-LEREQ 92 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~~~~~~~~~~~~~~~~--L--~~g~~VIID~tn-~~~~~ 92 (761)
+++.|+||+||||+|+.+++.+. ..+..++........ ............ + ...+.+|||... +....
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 118 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA 118 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT--TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH--HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH
Confidence 89999999999999999998751 123444432221100 111111111111 1 123457888743 44455
Q ss_pred HHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319 93 RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (761)
Q Consensus 93 R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R 125 (761)
...+..+ ......+.+|...-..+.+...+..|
T Consensus 119 ~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 119 QAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp HHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 5556666 55444455555443333333333334
No 284
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.65 E-value=0.017 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.+.|+|++||||||+.+.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987765
No 285
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.54 E-value=0.079 Score=60.00 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=28.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i 56 (761)
.++.+++|+|++||||||+++.|+..+. ..+.+...|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 4678999999999999999999886542 23333345544
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.54 E-value=0.028 Score=60.42 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=30.2
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
..++.++.|+|++||||||+++.|+..+ +........|..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 3568999999999999999999987653 234445556654
No 287
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.49 E-value=0.028 Score=60.06 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+++.|+||+||||+++.++..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999875
No 288
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.045 Score=57.20 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+++.|+||+||||+|+.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999874
No 289
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.40 E-value=0.04 Score=57.43 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+++.|+||+||||+|+.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998874
No 290
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=94.38 E-value=0.03 Score=38.16 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=25.8
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
|..|..|++.|.+...|+.|+.+|...-|
T Consensus 2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 30 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred cccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence 67899999999999999999999876544
No 291
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=94.37 E-value=0.033 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=24.4
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRAP 740 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~~ 740 (761)
|..|..|++.|.+...|+.|+..|...
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~ 28 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTHIKTKHSK 28 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred CccCCCCCCccCCHHHHHHHHHHHccC
Confidence 678999999999999999999988753
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.36 E-value=0.022 Score=56.53 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-.++.|+|++|||||||++.++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999874
No 293
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=94.34 E-value=0.027 Score=35.87 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=22.8
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+.+|..
T Consensus 1 ~~~C~~C~k~f~~~~~l~~H~~~h~~ 26 (27)
T 1znf_A 1 XYKCGLCERSFVEKSALSRHQRVHKN 26 (27)
T ss_dssp -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence 46899999999999999999998764
No 294
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=94.33 E-value=0.023 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+..|....|
T Consensus 6 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~ 35 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCARHLKVHTDTLS 35 (35)
T ss_dssp SCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred cCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999887554
No 295
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=94.32 E-value=0.018 Score=36.96 Aligned_cols=26 Identities=12% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCR 738 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~ 738 (761)
.|..|..|++.|.+...|+.|+.+|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~~H~ 27 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAMTKHLRTHG 27 (27)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred cCccCCCcChhhCCHHHHHHHHHHcc
Confidence 37899999999999999999998763
No 296
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.28 E-value=0.021 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=20.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVM 41 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~ 41 (761)
+-.++.|+|++|||||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34689999999999999999887
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.27 E-value=0.19 Score=55.94 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=30.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
.+.+|+++|++||||||++..|+..+ +.....++.|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 57889999999999999999988654 345666777654
No 298
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.22 E-value=0.12 Score=55.83 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=26.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~ 53 (761)
-.+++|.|.||+|||||+..++.. .+.+..+++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 369999999999999999998765 3444555654
No 299
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.12 Score=55.41 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.7
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+.+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567788999999999999999998876
No 300
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.16 E-value=0.081 Score=56.48 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.+..+++.|+||+||||+++.+++.+.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998765
No 301
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.14 E-value=0.096 Score=55.42 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~ 44 (761)
++|.|+||+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998774
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.12 E-value=0.17 Score=54.87 Aligned_cols=125 Identities=15% Similarity=0.088 Sum_probs=65.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe-cccccCC-C------CC-cH--------HHHHHHHHHHHHCCCcE
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINKG-K------SG-TK--------VQCLTSASSALKKGKSV 81 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~-~D~i~~~-~------~~-~~--------~~~~~~~~~~L~~g~~V 81 (761)
.+++|+|++||||||+.+.|...+.. ....++ .+.+... . .. .. ......+...+.....+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 48999999999999999999876542 233333 1222110 0 00 00 01224555556655555
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (761)
Q Consensus 82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~ 147 (761)
++.+..........+..+ ..+...+..+.- .+......|+........ .....+.+.+.++...
T Consensus 256 ~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~-~~~~~~~~Rl~~l~~~~~-~~~~~~~~~i~~~l~~ 320 (361)
T 2gza_A 256 ILLAELRGGEAYDFINVAASGHGGSITSCHA-GSCELTFERLALMVLQNR-QGRQLPYEIIRRLLYL 320 (361)
T ss_dssp EEESCCCSTHHHHHHHHHHTTCCSCEEEEEC-SSHHHHHHHHHHHHTTST-TGGGSCHHHHHHHHHH
T ss_pred EEEcCchHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHHHHhccc-cccCCCHHHHHHHHHH
Confidence 544433333333333334 444433444443 457778888877654321 0014566677666554
No 303
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=94.11 E-value=0.095 Score=56.30 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=72.5
Q ss_pred EEEEcCCCCcHHH-------HHHHHHHHcCCC--eEEEecccccCCC-----------------CCcHHHHH---HHHHH
Q 004319 23 VIMVGAPGSGKST-------FCEHVMRSSARP--WARICQDTINKGK-----------------SGTKVQCL---TSASS 73 (761)
Q Consensus 23 IvLvG~PGSGKST-------fA~~L~~~~~~~--~~~I~~D~i~~~~-----------------~~~~~~~~---~~~~~ 73 (761)
|+|+||.+.|==+ +-..+.++++.. ++++..|.-..+. .....++. +.+..
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~ 224 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE 224 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence 8999999998764 445566777744 4444444331110 11222332 34444
Q ss_pred HHHCCCcEEEeCCCCCHHHHH-HHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh--hc
Q 004319 74 ALKKGKSVFLDRCNLEREQRT-DFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK--KE 149 (761)
Q Consensus 74 ~L~~g~~VIID~tn~~~~~R~-~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~--~e 149 (761)
....|+.||+|-- .+ ....++.......+||+. .+.+++.+|+..|+.. .+..+.+.+.. .+
T Consensus 225 v~~~Gk~vILDID------vQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~--------~~~rl~~al~~ae~E 290 (337)
T 4dey_A 225 LARTLQLVVLDAD------TINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKS--------QAKHLNVQMVAADKL 290 (337)
T ss_dssp HTTTCCEEEEEET------TCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHH--------HHTTHHHHHHHHHHH
T ss_pred HHhCCCEEEEEeC------cHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCch--------HHHHHHHHHHHHHHH
Confidence 5558899999982 22 222332222234455655 4579999999999752 12233333211 11
Q ss_pred CCCccCCceEEEEcCChhhH
Q 004319 150 LPKLSEGFSRITLCQNENDV 169 (761)
Q Consensus 150 ~P~~~EgFd~V~vv~~~~ei 169 (761)
.-.....||.|++.++.+++
T Consensus 291 ~~~~~~~FDyvIVNDdLe~A 310 (337)
T 4dey_A 291 AQCPPELFDVILDENQLEDA 310 (337)
T ss_dssp HHSCGGGCSEEECCSSHHHH
T ss_pred HhhCcccCCEEEECCCHHHH
Confidence 11224569998887765544
No 304
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.05 E-value=0.036 Score=63.54 Aligned_cols=37 Identities=27% Similarity=0.560 Sum_probs=30.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
....++|+|+||+||||+|+.++..++..+..++.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3558999999999999999999999886666665443
No 305
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.00 E-value=0.14 Score=55.54 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=28.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
.-.++.|.|+||||||||+..++... +....+++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34699999999999999999988653 34455666543
No 306
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=93.97 E-value=0.037 Score=35.67 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.9
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+.+|..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 27 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKRHYRSHTN 27 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred CeECCCCCcccCCHHHHHHHHHHhcC
Confidence 68999999999999999999998864
No 307
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.93 E-value=0.033 Score=59.01 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~ 52 (761)
-++|.|+||+|||++|+.++..++..+..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 4889999999999999999999886665554
No 308
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.84 E-value=0.042 Score=52.68 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.1
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.+-.++.|+|+.|||||||.+.++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3457899999999999999999988753
No 309
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.84 E-value=0.033 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.720 Sum_probs=21.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
+..+++|+|+||||||||++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998854
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.84 E-value=0.032 Score=59.28 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=28.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i 56 (761)
++.++.|+|++||||||+++.|+..+. ........|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 578999999999999999999986542 33444555544
No 311
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.83 E-value=0.046 Score=56.99 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i 56 (761)
..++|+|+||+||||+|+.++..+. .++..++...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4799999999999999999998763 33555655443
No 312
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.81 E-value=0.036 Score=58.78 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.7
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.++.|+|++||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988653
No 313
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.74 E-value=0.047 Score=59.42 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=28.3
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
.++.++.|+|++||||||+++.|+..+ +..+.....|.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 467899999999999999999988654 23344444454
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.73 E-value=0.036 Score=53.92 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D 54 (761)
..++.++|++||||||++.+|...+ +.....+..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3478999999999999999998764 2344455543
No 315
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.66 E-value=0.075 Score=64.19 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc----------CCCeEEEecccccC--CCCCcHHHHHHHHHHHHHCC-C--cEEEeC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTINK--GKSGTKVQCLTSASSALKKG-K--SVFLDR 85 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~----------~~~~~~I~~D~i~~--~~~~~~~~~~~~~~~~L~~g-~--~VIID~ 85 (761)
.-++|+|+||+||||+++.++... +..+..++...+.. ...+.....+..+...+... . .++||-
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDE 271 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 271 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 347899999999999999999876 44455555544432 22334444444444444432 2 356687
Q ss_pred CCC
Q 004319 86 CNL 88 (761)
Q Consensus 86 tn~ 88 (761)
...
T Consensus 272 i~~ 274 (854)
T 1qvr_A 272 LHT 274 (854)
T ss_dssp C--
T ss_pred HHH
Confidence 443
No 316
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.65 E-value=0.045 Score=53.64 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i 56 (761)
-++++|.+|+||||+|..|.+. + +..++.|.+
T Consensus 18 gvli~G~SGaGKStlal~L~~r-G--~~lvaDD~v 49 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR-G--HQLVCDDVI 49 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHc-C--CeEecCCEE
Confidence 5899999999999999999874 4 666777665
No 317
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=93.63 E-value=0.034 Score=36.02 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|..|..|++.|.+...|+.|+..|..
T Consensus 2 k~~~C~~C~~~f~~~~~l~~H~~~h~~ 28 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSKMRHLETHDT 28 (30)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence 478999999999999999999998864
No 318
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.62 E-value=0.044 Score=62.34 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~ 53 (761)
.+..++|+|+||+||||+|+.+++.++..+..++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 34689999999999999999999999855555554
No 319
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.61 E-value=0.029 Score=56.45 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..-+++.||||+||||+|..+++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998865
No 320
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.60 E-value=0.038 Score=37.55 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPF 741 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~ 741 (761)
.|..|..|++.|.....|+.|+..|...-
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~k 34 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRSHIREVHGAA 34 (35)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred CCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence 47899999999999999999999987643
No 321
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.52 E-value=0.072 Score=57.55 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=30.1
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D 54 (761)
.++..+|+|+|.||+||||++.+|+..+ +.....++.|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4567789999999999999999998664 4556666665
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.48 E-value=0.042 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..+++++|++||||||++++|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998753
No 323
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.44 E-value=0.035 Score=38.41 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPF 741 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~ 741 (761)
.|..|..|++.|.....|+.|+.+|...-
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k 36 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEV 36 (37)
T ss_dssp CCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred CCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence 47899999999999999999999987643
No 324
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=93.42 E-value=0.04 Score=35.32 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=23.5
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+..|..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 27 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAHLKIHIA 27 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence 67899999999999999999988754
No 325
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=93.40 E-value=0.025 Score=36.52 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=22.8
Q ss_pred CCcccccCCCCCCChHHHHHHHhhc
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSC 737 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~ 737 (761)
.|..|..|++.|.+...|+.|+.+|
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~~H 26 (27)
T 2kvg_A 2 APYRCPLCRAGCPSLASMQAHMRGH 26 (27)
T ss_dssp CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred cCcCCCCCCcccCCHHHHHHHHHhc
Confidence 3789999999999999999999876
No 326
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.39 E-value=0.047 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
....|+|+|++|||||||.+.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998653
No 327
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.36 E-value=0.076 Score=53.90 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=29.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc--CCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS--ARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~--~~~~~~I~~D~ 55 (761)
+..+++++|.+|+||||++..|+..+ +.....++.|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56799999999999999999998654 45566777663
No 328
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=93.35 E-value=0.037 Score=35.61 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCR 738 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~ 738 (761)
.|..|..|++.|.+...|+.|+..|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~~h~ 27 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27 (28)
T ss_dssp CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred cCccCCCCCcccCCHHHHHHHHHhcC
Confidence 37889999999999999999998875
No 329
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.31 E-value=0.041 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-.+++|+|+||||||||++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999874
No 330
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.30 E-value=0.045 Score=59.99 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.2
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
-+...+++|+|+|||||||+++.|+..++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34567999999999999999999998766
No 331
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=93.28 E-value=0.034 Score=35.94 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.7
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+.+|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~~ 27 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHILLHEN 27 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred CccCCCCCchhCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
No 332
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.25 E-value=0.13 Score=55.93 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
..+++|.|+||+||||||..++... +....+++.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4588999999999999999987653 45567777654
No 333
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.15 E-value=0.29 Score=52.10 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
..-+..+++.|+||+||||+|+.+++.+.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34466899999999999999999998865
No 334
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.15 E-value=0.069 Score=54.62 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDT 55 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~ 55 (761)
.-++|.|+||+|||++|+.+..... .++..++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 4578999999999999999998765 4576676443
No 335
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=93.14 E-value=0.065 Score=56.35 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=70.9
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCCCcHHH-----HHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQ-----CLTSASSALKKGKSVFLDRCNLERE 91 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~~~~~~-----~~~~~~~~L~~g~~VIID~tn~~~~ 91 (761)
..+.||++-|.-||||.+.+++|.+.++ +.+.++.... .+..+ +..-....-..|+.+|.|++-+...
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~------Pt~eE~~~~ylwR~~~~lP~~G~I~IFdRSwY~~v 146 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA------PTDEEKSHDFLWRIEKQVPAAGMVGVFDRSQYEDV 146 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS------CCHHHHTSCTTHHHHTTCCCTTCEEEEESCGGGGG
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC------CChhhhcCCHHHHHHHhCCCCCeEEEEeCchhhhH
Confidence 4689999999999999999999999887 3333332210 01111 1122222236788899999655541
Q ss_pred -------------HHHHHH------Hh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 92 -------------QRTDFV------KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 92 -------------~R~~~~------~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
....+. .. ...|+.+.-++|++|.++..+|+.+|...+
T Consensus 147 lverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP 204 (289)
T 3rhf_A 147 LIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP 204 (289)
T ss_dssp THHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 111122 22 467888888999999999999999998754
No 336
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.13 E-value=0.048 Score=59.22 Aligned_cols=28 Identities=43% Similarity=0.638 Sum_probs=24.2
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+....|+|+|+|||||||+++.|+..++
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4445689999999999999999998876
No 337
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.10 E-value=0.019 Score=69.05 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=34.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~ 63 (761)
.+..++|.|+||+||||+|+.++..++..+..++...+...+.+.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~ 554 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTT
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCc
Confidence 345688999999999999999999988767667665555444443
No 338
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.07 E-value=0.06 Score=55.81 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.8
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+-.+++|+|++||||||+.+.+...+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345699999999999999999987643
No 339
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.06 E-value=0.051 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.739 Sum_probs=21.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
...+++|+|+||||||||+.+++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988654
No 340
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.05 E-value=0.075 Score=56.83 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.6
Q ss_pred CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
.++.+|+++|++|+||||++..|+..+ +.....++.|..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 467899999999999999999987543 345666777754
No 341
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.03 E-value=0.046 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-.+++|+|+||||||||++.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998754
No 342
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.99 E-value=0.075 Score=38.90 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.+.+|..|++.|.+...|+.|+..|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eom_A 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40 (46)
T ss_dssp SSCCCSSSCCCCSSHHHHHHHHHHHSSCCC
T ss_pred CCcCCCCCCCeeCChHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876544
No 343
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=92.97 E-value=0.049 Score=38.32 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 34 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 34 (39)
T ss_dssp SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred CceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence 478999999999999999999999886544
No 344
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.94 E-value=0.059 Score=60.52 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.-++|+|+||+||||+|+.++..+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999885
No 345
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.91 E-value=0.21 Score=54.25 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=28.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
...+++|.|+||+||||||..++... +....+++.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34689999999999999999987543 44566777643
No 346
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.86 E-value=0.092 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eq2_A 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40 (46)
T ss_dssp CSSSCCSSCCCCSSHHHHHHHGGGGCCCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 347
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.85 E-value=0.088 Score=38.38 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40 (46)
T ss_dssp CTTCCSSSCCCCSSHHHHHHHHTTTSCSCC
T ss_pred cCeECCCCCcccCChhHHHHHhHhcCCCCC
Confidence 478999999999999999999999876544
No 348
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=92.85 E-value=0.19 Score=54.17 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.7
Q ss_pred ccEEEEEEcCCCCcHHHHH-HHHHHHcC
Q 004319 19 KQILVIMVGAPGSGKSTFC-EHVMRSSA 45 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA-~~L~~~~~ 45 (761)
....|++-|+-||||||++ +.|.+.++
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999 99988765
No 349
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.75 E-value=0.051 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
++.|+|++||||||+.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999988654
No 350
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=92.75 E-value=0.053 Score=61.49 Aligned_cols=108 Identities=9% Similarity=-0.000 Sum_probs=65.2
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEec----ccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCH-
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQ----DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER- 90 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~----D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~- 90 (761)
.+.+.||++-|.-||||+|.+++|.+.++. .+.++.. +.-...++ +.......-..|..+|.|..-+..
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~y-----l~R~~~~lP~~G~IvIfdRSwYs~~ 114 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPP-----QWRFWRRLPPKGRTGIFFGNWYSQM 114 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCT-----THHHHHHCCCTTCEEEEESCHHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCCh-----hhhHHHhCCCCCeEEEEeCchhhHH
Confidence 467899999999999999999999998873 2322221 11111111 112222233578889999854333
Q ss_pred -----------HHHHHHH-------Hh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319 91 -----------EQRTDFV-------KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (761)
Q Consensus 91 -----------~~R~~~~-------~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~ 129 (761)
.....++ .. ...|+.+..+||++|.++..+|+.+|...+
T Consensus 115 ~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 115 LYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 2111111 11 456888999999999999999999997643
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.75 E-value=0.036 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
.++.|+|++||||||+++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999987643
No 352
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.75 E-value=0.047 Score=55.63 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=21.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++||||||+.+.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999887543
No 353
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.73 E-value=0.083 Score=38.51 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2enf_A 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHHHHTTTTTSSC
T ss_pred cCeECCCCCcccCCHHHHHHHHHhhCCCCC
Confidence 478999999999999999999999876544
No 354
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.71 E-value=0.074 Score=36.36 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.+..|..|++.|.+...|+.|+.+|..
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~ 34 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred CCeecCcCCCCcCchHHHHHHHHHhcC
Confidence 478999999999999999999998764
No 355
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.71 E-value=0.62 Score=51.86 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~ 53 (761)
-.+++|.|.||+|||||+..++.. .+.+..+++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 469999999999999999998754 2445666664
No 356
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.70 E-value=0.085 Score=38.52 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2em6_A 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40 (46)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHTTTSSSCC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 357
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.70 E-value=0.1 Score=37.92 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.+..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ep1_A 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40 (46)
T ss_dssp CSSCCSSSCCCCSSHHHHHHHHGGGSSSCC
T ss_pred CCcCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence 479999999999999999999999876544
No 358
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.69 E-value=0.089 Score=37.39 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 38 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSG 38 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred CCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876433
No 359
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.66 E-value=0.089 Score=38.34 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2emg_A 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHTTTSCCCC
T ss_pred CCEECCccCcccCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 360
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.63 E-value=0.057 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999987543
No 361
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.62 E-value=0.092 Score=37.72 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESG 40 (44)
T ss_dssp SSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred cCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence 478999999999999999999999876544
No 362
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.59 E-value=0.1 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eoh_A 11 KPYECKECRKTFIQIGHLNQHKRVHTGERS 40 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHHHHHCSSCCS
T ss_pred CCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876433
No 363
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=92.52 E-value=0.039 Score=35.45 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=23.6
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~~ 27 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRIHSG 27 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred CccCCCCCCccCChhHHHHHHHHhcC
Confidence 67899999999999999999998754
No 364
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.52 E-value=0.14 Score=60.90 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRC 86 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~t 86 (761)
.++|+|+||+|||++|+.+++.+ +.++..++...+.+............+. ...+..+++|-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~--~~~~~vl~lDEi 588 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR--RKPYSVVLLDAI 588 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH--HCSSSEEEEECG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH--hCCCeEEEEeCc
Confidence 68999999999999999999886 3567788876665443333111112211 123445677763
No 365
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.50 E-value=0.06 Score=55.78 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
-.+++|+|+||||||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999998854
No 366
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.46 E-value=0.072 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
++.+++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999987544
No 367
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.46 E-value=0.054 Score=54.77 Aligned_cols=23 Identities=39% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.++.|+|++||||||+.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999988754
No 368
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.45 E-value=0.084 Score=38.62 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHHHTTTTTSCCS
T ss_pred cccCCCCCCcccCcHHHHHHHHHhcCCCCC
Confidence 489999999999999999999998876433
No 369
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.43 E-value=0.26 Score=51.70 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~ 55 (761)
.+++|.|++|+||||+++.+.+..+..+.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 38999999999999999999988765566666543
No 370
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.41 E-value=0.11 Score=37.79 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eoq_A 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHHHHHTTCCCS
T ss_pred CCcCCCcCCchhCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 371
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.41 E-value=0.076 Score=37.74 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 39 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred CCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876544
No 372
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.41 E-value=0.45 Score=52.84 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEec
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~ 53 (761)
-.+++|.|.||+|||||+..++... +.+..+++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4699999999999999999987542 345666664
No 373
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=92.38 E-value=0.098 Score=38.18 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2emk_A 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHHHHHHSSCCC
T ss_pred CceECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence 479999999999999999999999876544
No 374
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.37 E-value=0.11 Score=37.86 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2ytr_A 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40 (46)
T ss_dssp CTTCCTTTCCCCSSHHHHHHHHTTTTTCSC
T ss_pred cCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence 478999999999999999999999876544
No 375
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=92.37 E-value=0.095 Score=36.10 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=24.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|.+|..|++.|.+...|+.|+..+..
T Consensus 10 k~~~C~~C~k~f~~~~~l~~H~~~H~~ 36 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLALHRKRHML 36 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred CCccCCCCCcccCcHHHHHHHHHHhcc
Confidence 489999999999999999999998764
No 376
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.37 E-value=0.11 Score=37.92 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.....|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eq1_A 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40 (46)
T ss_dssp CCCCCTTTTCCCSSHHHHHHHHTTTCCSCC
T ss_pred CCeECCcCChhhCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876544
No 377
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.36 E-value=0.057 Score=36.93 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|..|..|++.|.+...|+.|+.+|..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H~~ 34 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34 (36)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHccC
Confidence 488999999999999999999998864
No 378
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.35 E-value=0.064 Score=36.82 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|..|..|++.|.+...|+.|+.+|..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H~~ 34 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNLKAHMNRHST 34 (36)
T ss_dssp CSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred CCccCCCCCchhCCHHHHHHHHHHhcc
Confidence 488999999999999999999998764
No 379
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.34 E-value=0.066 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++|||||||++.|..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44689999999999999999998765
No 380
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=92.32 E-value=0.068 Score=55.94 Aligned_cols=46 Identities=4% Similarity=0.058 Sum_probs=36.7
Q ss_pred CCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHH
Q 004319 260 ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (761)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~ 306 (761)
.+-++.++. .....++++|++||+|||+||+|.+++|++..+.+.+
T Consensus 197 ~~rir~vL~-iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~ 242 (277)
T 3sig_A 197 RGRAAKVLA-AARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLD 242 (277)
T ss_dssp HHHHHHHHH-HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHST
T ss_pred HHHHHHHHH-HHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhh
Confidence 334444444 4445789999999999999999999999998888874
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.30 E-value=0.13 Score=50.57 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=26.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D 54 (761)
....|+++|.+|+||||+..+|...+. .....+..|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 456889999999999999999987753 123444443
No 382
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.30 E-value=0.091 Score=37.47 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.++...-|
T Consensus 10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 39 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39 (42)
T ss_dssp CCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred CCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence 488999999999999999999999876543
No 383
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.30 E-value=0.071 Score=37.85 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+..|...-|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 38 (41)
T 2ept_A 9 RVYECQECGKSFRQKGSLTLHERIHTGSGP 38 (41)
T ss_dssp CCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred CCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 384
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.30 E-value=0.16 Score=60.38 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=40.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc----------CCCeEEEeccccc--CCCCCcHHHHHHHHHHHHHC--CCcEEEe
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTIN--KGKSGTKVQCLTSASSALKK--GKSVFLD 84 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----------~~~~~~I~~D~i~--~~~~~~~~~~~~~~~~~L~~--g~~VIID 84 (761)
.+.-++|+|+||+||||+++.++..+ +..+..++...+. ....+.....++.+...+.. +..++||
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34457899999999999999999875 2112122222221 12334455555555555544 3457788
Q ss_pred CCCC
Q 004319 85 RCNL 88 (761)
Q Consensus 85 ~tn~ 88 (761)
....
T Consensus 286 Ei~~ 289 (758)
T 1r6b_X 286 EIHT 289 (758)
T ss_dssp TTTT
T ss_pred chHH
Confidence 7553
No 385
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=92.29 E-value=0.11 Score=37.76 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 40 (46)
T 2em0_A 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40 (46)
T ss_dssp CCCCCSSSCCCCSSHHHHHHHGGGGSSSSC
T ss_pred cCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999876544
No 386
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.29 E-value=0.11 Score=37.92 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ytn_A 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40 (46)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHGGGTSCCCC
T ss_pred cCeECCCCCCeeCCHHHHHHHhhhcCCCCC
Confidence 478999999999999999999999886544
No 387
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.27 E-value=0.1 Score=53.60 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~ 52 (761)
.+|.|+|.+||||||+|+.|.+.++ +.++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g--~~~~~ 31 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC--EEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CeEEe
Confidence 4789999999999999999988888 55554
No 388
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.26 E-value=0.099 Score=37.69 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.+..|..|++.|.+...|+.|+.+|...-|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 38 (43)
T 2yrm_A 9 GAFFCNECDCRFSEEASLKRHTLQTHSDKS 38 (43)
T ss_dssp CCBCCSSSCCCBSSHHHHHHHHHHHTCTTC
T ss_pred CCEECCCCCCeeCChHHHHHHHHhhCCCCC
Confidence 478999999999999999999999876544
No 389
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.25 E-value=0.095 Score=38.27 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2en9_A 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40 (46)
T ss_dssp CCCBCTTTCCBCSSHHHHHHHHHHHTSSCC
T ss_pred CCEECCccCcccCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876433
No 390
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=92.23 E-value=0.079 Score=37.75 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 38 (42)
T 2el5_A 9 NPYECSECGKAFNRKDQLISHQRTHAGESG 38 (42)
T ss_dssp CSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred CCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence 478999999999999999999999876544
No 391
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=92.22 E-value=0.095 Score=33.98 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.9
Q ss_pred CcccccCCCCCCChHHHHHH-HhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSH-ISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~H-l~~~~~ 739 (761)
|..|..|++.|.+...|+.| ...|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~ 28 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred CcCCcccCcccCChHHHHHHHHHHccC
Confidence 68999999999999999999 567654
No 392
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.20 E-value=0.11 Score=37.84 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHTTTTTSCC
T ss_pred CCeeCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 393
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.18 E-value=0.08 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+++++|+|||||||++.+++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999997776553
No 394
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=92.17 E-value=0.077 Score=37.73 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~ 39 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39 (42)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred CCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence 478999999999999999999999876544
No 395
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.17 E-value=0.11 Score=37.52 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.+..|..|++.|.....|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (44)
T 2eou_A 11 TTSECQECGKIFRHSSLLIEHQALHAGESG 40 (44)
T ss_dssp CCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred cCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence 478999999999999999999999876443
No 396
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.15 E-value=0.11 Score=37.94 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+..|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2enh_A 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40 (46)
T ss_dssp SSCBCTTTCCBCSSSHHHHHHGGGSCCSCC
T ss_pred CCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876433
No 397
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.14 E-value=0.1 Score=37.88 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2eov_A 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHHHHHHHSCCSS
T ss_pred CCccCCccChhhCCHHHHHHHHHhcCCCCC
Confidence 489999999999999999999999876543
No 398
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.13 E-value=0.11 Score=37.82 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2yth_A 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40 (46)
T ss_dssp SSBCCSSSCCCBSSHHHHHHHGGGGTTCCC
T ss_pred cCCCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence 478999999999999999999999876544
No 399
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=91.36 E-value=0.027 Score=35.73 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=22.0
Q ss_pred CcccccCCCCCCChHHHHHHHhhc
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSC 737 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~ 737 (761)
|..|..|++.|.+...|+.|+.+|
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHIRHH 25 (26)
Confidence 678999999999999999999876
No 400
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=92.08 E-value=0.077 Score=38.78 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ytp_A 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHTTTSCCCC
T ss_pred CCeECCcCCcccCCHHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876543
No 401
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.07 E-value=0.065 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
-.++.|+|++||||||+.+.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998754
No 402
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.03 E-value=0.071 Score=36.58 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|..|..|++.|.+...|+.|+.+|..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H~~ 34 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDRHMLVHGD 34 (36)
T ss_dssp CCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred CCeECCCCCCccCCHHHHHHHHHHhcC
Confidence 478999999999999999999998764
No 403
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.02 E-value=0.38 Score=50.97 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=26.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~ 53 (761)
.-.+++|.|.||+|||||+..++... +.+..+++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34699999999999999999987543 234455553
No 404
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=91.25 E-value=0.028 Score=36.49 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=23.4
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~~ 27 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVRQHTG 27 (29)
Confidence 67899999999999999999988754
No 405
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.99 E-value=0.12 Score=37.67 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|++|+..|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred CCcCCCccChhhCChHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 406
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.98 E-value=0.066 Score=36.75 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|..|..|++.|.+...|+.|+..|..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H~~ 34 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHSLQAHLRIHTN 34 (36)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred CCEECCCCCceeCCHHHHHHHHHHhCC
Confidence 478999999999999999999998764
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.97 E-value=0.066 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++.-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999987543
No 408
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.96 E-value=0.067 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.++.|+|++||||||+.+.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998754
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.96 E-value=0.062 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.++.|+|++||||||+.+.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998753
No 410
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.95 E-value=0.12 Score=37.64 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2eq4_A 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40 (46)
T ss_dssp CCCCBTTTTBCCSCHHHHHHHHHHCCSSSC
T ss_pred CCeECCCCCCccCchHHHHHHHHhcCCCCC
Confidence 489999999999999999999999876443
No 411
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.93 E-value=0.5 Score=49.80 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=23.4
Q ss_pred ccCccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 16 KKWKQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.++.+-.|.++|.||+|||||.++|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4456678999999999999999999754
No 412
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.92 E-value=0.15 Score=54.81 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=27.9
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D 54 (761)
..+..++.|+|+|||||||+.+.|...+ +....++..|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 3456799999999999999999987543 2334444444
No 413
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.86 E-value=0.089 Score=38.26 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=26.8
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|.+|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 40 (46)
T 2eoe_A 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40 (46)
T ss_dssp CSSEETTTTEECSSHHHHHHHHGGGSCCCS
T ss_pred CCeECCCcChhhCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999986544
No 414
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.85 E-value=0.084 Score=38.43 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p 40 (46)
T 2yts_A 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGGGTSSCCS
T ss_pred cCEECCCCChhhCChHHHHHHHHhcCCCCC
Confidence 488999999999999999999999876544
No 415
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.84 E-value=0.081 Score=38.52 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ytf_A 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHTSCSSSS
T ss_pred CCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876544
No 416
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.84 E-value=0.076 Score=38.67 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|.+|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eow_A 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40 (46)
T ss_dssp CCEECTTSCCEESSHHHHHHHHHHHCCCSC
T ss_pred CCeeccccCChhcCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999886544
No 417
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.80 E-value=0.12 Score=37.65 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 40 (46)
T 2elz_A 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40 (46)
T ss_dssp SSCBCSSSCCBCSSHHHHHHHGGGGGSCCC
T ss_pred CCeeCcccCchhCCHHHHHHHHHhcCCCCC
Confidence 489999999999999999999999876544
No 418
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.78 E-value=0.085 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.++.|+|++||||||+.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998763
No 419
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.77 E-value=0.085 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
+-.++.|+|++||||||+.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998754
No 420
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.77 E-value=0.13 Score=37.47 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40 (46)
T ss_dssp CSBCCTTTCCCBSSHHHHHHHHTTTTTCCC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876443
No 421
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.77 E-value=0.086 Score=38.35 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eq3_A 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40 (46)
T ss_dssp CSSEETTTTEECSSHHHHHHHHTTSCCCCC
T ss_pred CCeECCCCChhhCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876544
No 422
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.75 E-value=0.072 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=21.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++||||||+.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33589999999999999999987543
No 423
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.73 E-value=0.095 Score=37.94 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (44)
T 2epv_A 11 KPYECNECGKAFIWKSLLIVHERTHAGVSG 40 (44)
T ss_dssp CSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred cCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence 488999999999999999999999876444
No 424
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.71 E-value=0.086 Score=38.43 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|.+|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHTTTCCCCC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence 589999999999999999999999876544
No 425
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=90.99 E-value=0.032 Score=36.30 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=23.5
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|..|++.|.+...|+.|+.+|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h~~ 28 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVRIHTG 28 (30)
Confidence 68999999999999999999988754
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.70 E-value=0.11 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
+-+.+|+|++||||||+.++|.-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34899999999999999999987654
No 427
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.69 E-value=0.095 Score=38.34 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40 (46)
T ss_dssp CSSSBTTTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred CCcCCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999998876443
No 428
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.65 E-value=0.099 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2eml_A 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHGGGSSCCC
T ss_pred CCeeCCCcCCccCCHHHHHHHHHHhcCCCC
Confidence 478999999999999999999999886544
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.64 E-value=0.077 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 430
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.62 E-value=0.099 Score=38.10 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.+..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2emi_A 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHGGGCSCCC
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHhCCCCC
Confidence 478999999999999999999999876543
No 431
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.61 E-value=0.1 Score=62.10 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
-++|+|+||+||||+|+.+++.+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999886
No 432
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.61 E-value=0.5 Score=49.99 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC------CCeEEEecccccCCCCCcHHHHHHHHHHHHH------CCCcEEEeCC-
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA------RPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRC- 86 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~------~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~------~g~~VIID~t- 86 (761)
.-.+++.|+||+||||+|+.+++..+ ..+..++.+ +.....+...+ +.+.+. ..+.+|||..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~ir~-li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIRT-IKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHHH-HHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHHHH-HHHHHhhccccCCceEEEeccHH
Confidence 55889999999999999999988631 234444432 11122222222 223332 2245788773
Q ss_pred CCCHHHHHHHHHh-CCCCceEEEEEEeCC
Q 004319 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLP 114 (761)
Q Consensus 87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p 114 (761)
.++......+++. .+..-...+|.+...
T Consensus 93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 93 RMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp GBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred HhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 3455555667766 555444555555433
No 433
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.60 E-value=0.078 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 434
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.59 E-value=0.078 Score=54.45 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
-.++.|+|++||||||+.+.++.-+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 435
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=91.57 E-value=0.14 Score=33.78 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=23.6
Q ss_pred Ccccc--cCCCCCCChHHHHHHHhhcCC
Q 004319 714 ELRCH--RCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 714 ~l~C~--~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
|..|. .|++.|.+...|+.|+.+|..
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~ 29 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQRHKRTHTG 29 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence 67897 999999999999999998865
No 436
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.57 E-value=0.18 Score=49.71 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=26.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D 54 (761)
....|+|+|.+|+||||+..++..... .....+..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 456788889999999999999987643 223445444
No 437
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.53 E-value=0.093 Score=38.23 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2ep3_A 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHTTTTTSCC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 438
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.52 E-value=0.093 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
-.++.|+|++||||||+.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 439
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.51 E-value=0.097 Score=38.15 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ep2_A 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHTTSSCCS
T ss_pred cCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876544
No 440
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.50 E-value=0.11 Score=52.05 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=26.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEecc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQD 54 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~D 54 (761)
.-.++++.|.||+||||||.+++.. .+....+++.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3469999999999999999987643 24445555543
No 441
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.48 E-value=0.097 Score=38.21 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHTTTSCSCC
T ss_pred CCeECCcCCCccCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 442
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.45 E-value=0.082 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=21.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++||||||+.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34589999999999999999987543
No 443
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.44 E-value=0.095 Score=38.11 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2yrj_A 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHTTTSSCCS
T ss_pred CCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999876544
No 444
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.43 E-value=0.087 Score=38.49 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2em4_A 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred cCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence 488999999999999999999999876443
No 445
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.43 E-value=0.093 Score=38.16 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2emm_A 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHHSCCCT
T ss_pred CCeeCCCCChhhCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 446
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.41 E-value=0.061 Score=56.99 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 004319 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
++|.|+||+|||++|+.++..++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999876
No 447
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.41 E-value=0.09 Score=38.31 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLISHQRTHAGEKP 40 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHTTSCC
T ss_pred cCcCCCCCCcccCcHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 448
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.41 E-value=0.084 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987654
No 449
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.41 E-value=0.071 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999987543
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.39 E-value=0.1 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-|+++|.+|+||||+.+++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999865
No 451
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.37 E-value=0.12 Score=56.46 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
...+++|+|++||||||+.+.+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999987653
No 452
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=91.36 E-value=0.13 Score=37.59 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|++|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHHHHHHHSCCSS
T ss_pred CCcccCccCcccCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876543
No 453
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.35 E-value=0.096 Score=38.17 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 40 (46)
T 2em3_A 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHHCCCCC
T ss_pred cCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 454
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.35 E-value=0.088 Score=37.97 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 38 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38 (44)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHHTSSCS
T ss_pred cCccCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence 488999999999999999999999876544
No 455
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=91.33 E-value=0.15 Score=33.70 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCcccc--cCCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCH--RCRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~--~C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|..|. .|++.|.+...|+.|+.+|..
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ 30 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence 378998 899999999999999998864
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.33 E-value=0.12 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMR 42 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~ 42 (761)
..|+|+|.+|+||||+.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999975
No 457
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.32 E-value=0.11 Score=47.88 Aligned_cols=21 Identities=33% Similarity=0.778 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 004319 23 VIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 23 IvLvG~PGSGKSTfA~~L~~~ 43 (761)
|+++|.+|+||||+.+++...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999865
No 458
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.32 E-value=0.11 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~~ 45 (761)
...+.|+|++||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998765
No 459
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.31 E-value=0.1 Score=38.04 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2emf_A 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40 (46)
T ss_dssp CCEECSSSCCEESCHHHHHHHGGGTSCSSC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876443
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.28 E-value=0.11 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-|+|+|++|+||||+.+++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 461
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.27 E-value=0.11 Score=56.50 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=21.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
...+++++|++||||||+.+.+....
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34599999999999999999987543
No 462
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.27 E-value=0.12 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+++|+|+.||||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999998653
No 463
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.26 E-value=0.18 Score=54.24 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=22.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
...+++|.|+|||||||||..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999876
No 464
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=91.26 E-value=0.11 Score=37.86 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2el4_A 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHGGGSSSCCC
T ss_pred CceECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 465
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=91.23 E-value=0.093 Score=38.31 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2emj_A 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHTTSCS
T ss_pred CCEECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876443
No 466
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.21 E-value=0.11 Score=37.46 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (44)
T 2emb_A 11 KRYECSKCQATFNLRKHLIQHQKTHAAKSG 40 (44)
T ss_dssp SSEECTTTCCEESCHHHHHHHGGGGCCCCC
T ss_pred CCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999876544
No 467
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.21 E-value=0.089 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
-.++.|+|++||||||+.+.|+.-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 468
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.20 E-value=0.09 Score=54.80 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
+-.++.|+|++||||||+.+.|+.-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33589999999999999999987654
No 469
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.19 E-value=0.11 Score=37.90 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHTTTCCCCC
T ss_pred CCeECCCCCchhCChHHHHHHHhhcCCCCC
Confidence 479999999999999999999999876443
No 470
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.18 E-value=0.08 Score=38.49 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPF 741 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~ 741 (761)
.+..|..|++.|.+...|+.|+.+|...-
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k 39 (45)
T 2epu_A 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39 (45)
T ss_dssp CSEEETTTTEEESSHHHHHHHHTTTSSCC
T ss_pred cCccCCCCCCccCChHHHHHHHHHhCCCC
Confidence 48899999999999999999999987643
No 471
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.18 E-value=0.12 Score=37.61 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHGGGCCCSC
T ss_pred CCeECCCCChhhCCHHHHHHHHHhcCCCCC
Confidence 489999999999999999999999876544
No 472
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.18 E-value=0.11 Score=37.36 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (44)
T 2eof_A 11 KPYECNECQKAFNTKSNLMVHQRTHTGESG 40 (44)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred CCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 473
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=91.15 E-value=0.02 Score=38.73 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=25.6
Q ss_pred CcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 714 ELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
|..|..|++.|.+...|+.|+.+|...-|
T Consensus 2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp 30 (32)
T 2kfq_A 2 AFACPACPKRFMRSDALSKHIKTAFIVVA 30 (32)
T ss_dssp CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence 68999999999999999999999876544
No 474
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.12 E-value=0.11 Score=37.47 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPF 741 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~ 741 (761)
.|..|..|++.|.+...|+.|+.+|...-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~ 39 (44)
T 2eoj_A 11 NPYECCECGKVFSRKDQLVSHQKTHSGQS 39 (44)
T ss_dssp CSCEETTTTEECSSHHHHHHHHTTSSSSC
T ss_pred cCeeCCCCCCccCCHHHHHHHHHHcCCCC
Confidence 48999999999999999999999987643
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.11 E-value=0.097 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q 004319 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 22 LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.+.|+|++|||||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998654
No 476
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.11 E-value=0.093 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
-.++.|+|++||||||+.+.|+.-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999987543
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.09 E-value=0.14 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
..-|+++|.+|+|||||.+++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 478
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.08 E-value=0.47 Score=52.94 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=26.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~ 53 (761)
.-.+++|.|.||+||||||..++... +.+..+++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 34699999999999999999987543 445556654
No 479
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.06 E-value=0.092 Score=37.94 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=24.5
Q ss_pred CCccccc--CCCCCCChHHHHHHHhhcCC
Q 004319 713 MELRCHR--CRSAHPSIPRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~--C~~~~~n~~~LK~Hl~~~~~ 739 (761)
.|.+|.. |++.|.....|+.|+.+|..
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg 36 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTA 36 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence 4899987 99999999999999999865
No 480
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.06 E-value=0.095 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
-.++.|+|++||||||+.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 481
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.05 E-value=0.16 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 20 ~~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
..+++|.|+|||||||||..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4599999999999999999998764
No 482
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.05 E-value=0.1 Score=37.89 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRIHQRVHMGEKC 40 (46)
T ss_dssp SSEECTTTCCEESSHHHHHHHHTTTCCSCS
T ss_pred CCeECCCcCcccCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876543
No 483
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.05 E-value=0.074 Score=36.74 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCcccccCCCCCCCh-HHHHHHHhhcCC
Q 004319 713 MELRCHRCRSAHPSI-PRLKSHISSCRA 739 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~-~~LK~Hl~~~~~ 739 (761)
.|..|..|++.|.+. ..|+.|+.+|..
T Consensus 8 k~~~C~~C~k~f~~~~~~L~~H~~~H~~ 35 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDLQRHIWAHEG 35 (37)
T ss_dssp CCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred CCeECCCCChhhccCHHHHHHHHHhcCC
Confidence 478999999999999 999999998754
No 484
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.04 E-value=0.1 Score=38.07 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAP 740 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~ 740 (761)
.|..|..|++.|.....|+.|+.+|...
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~ 38 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHHHHHHHHT
T ss_pred CCeECCCCCcccCCHHHHHHHHHHhCCC
Confidence 4899999999999999999999988654
No 485
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.04 E-value=0.17 Score=53.27 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=29.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (761)
Q Consensus 19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i 56 (761)
++.++.++|++|+||||++..|+..+ +.....++.|..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 56788889999999999999987543 345556666653
No 486
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.03 E-value=0.12 Score=37.64 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ytj_A 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred cCeECCCCChhhCCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999876544
No 487
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.03 E-value=0.096 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987543
No 488
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=90.97 E-value=0.12 Score=37.57 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2em9_A 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGGGGTSCCC
T ss_pred cCeECCccccccCChHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876544
No 489
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.97 E-value=0.17 Score=36.83 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCcccccCCCCCCChHHHHHHHh-hcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHIS-SCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~-~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+. .|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~ 41 (47)
T 2epx_A 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41 (47)
T ss_dssp CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS
T ss_pred CCEECCccCchhCChHHHHHHhHhhcCCCCC
Confidence 48999999999999999999999 8876433
No 490
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=90.97 E-value=0.21 Score=41.55 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCccccc--CCCCCCChHHHHHHH-hhcCCCCCcccccCCc
Q 004319 713 MELRCHR--CRSAHPSIPRLKSHI-SSCRAPFPSSLLENGR 750 (761)
Q Consensus 713 ~~l~C~~--C~~~~~n~~~LK~Hl-~~~~~~~~~~~~~~~~ 750 (761)
.|.+|.+ |++.|..-..|+.|+ .+|..+-|...++.+.
T Consensus 26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~~ 66 (73)
T 1x3c_A 26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEE 66 (73)
T ss_dssp CSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCCC
T ss_pred CCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccccc
Confidence 5999976 999999999999998 6899999998888764
No 491
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.95 E-value=0.21 Score=53.63 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=28.6
Q ss_pred cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (761)
Q Consensus 17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~ 55 (761)
..+..+|.++|+||+||||+.+.|+..+ +.....++.|.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 3456788999999999999999997543 33445555443
No 492
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.93 E-value=0.12 Score=37.57 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 40 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH 40 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHHHCCSCCC
T ss_pred CCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876544
No 493
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.93 E-value=0.11 Score=37.93 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=26.4
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.+..|..|++.|.+...|+.|+..|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2em2_A 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHHCCCCS
T ss_pred CCEECCcCCchhCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999876543
No 494
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.93 E-value=0.098 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~~ 44 (761)
.++.|+|++||||||+.+.|+.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 588999999999999999987544
No 495
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.92 E-value=0.12 Score=47.51 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-|+++|.+|+|||||.+++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 496
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.86 E-value=0.085 Score=38.38 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=26.2
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp 40 (46)
T 2eor_A 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40 (46)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHHHHSCCC
T ss_pred cCccCCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence 489999999999999999999998875433
No 497
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=90.81 E-value=0.14 Score=41.75 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAP 740 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~ 740 (761)
.|.+|..|++.|.+...|+.|+++|...
T Consensus 12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~ 39 (66)
T 2epp_A 12 GILPCGLCGKVFTDANRLRQHEAQHGVT 39 (66)
T ss_dssp CCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred cCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence 5899999999999999999999998763
No 498
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.79 E-value=0.12 Score=37.56 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCSSC
T ss_pred CCcCCCCCCCcCCChHHHHHHHHHhCCCCC
Confidence 489999999999999999999999876543
No 499
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.79 E-value=0.092 Score=38.27 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP 742 (761)
Q Consensus 713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~ 742 (761)
.|..|..|++.|.+...|+.|+.+|...-|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40 (46)
T ss_dssp CSEECTTTCCEESSSHHHHTTGGGGSSCCS
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999876544
No 500
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.75 E-value=0.13 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004319 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (761)
Q Consensus 21 ~LIvLvG~PGSGKSTfA~~L~~~ 43 (761)
.-|+++|.+|+|||||.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
Done!