BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004320
(761 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS 226
G P+ + P F+E+ + ++E G EGI R + + E++ ++++Q
Sbjct: 55 GVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL 114
Query: 227 ADEDAHV--IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPE 284
A++D V + +K ELP VP + L+EA+KI+ +E ++ A++ +L+ FP+
Sbjct: 115 AEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VLKKFPK 173
Query: 285 PNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
N + + ++ ++ +S + N MT ++ C P L+RP
Sbjct: 174 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 214
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRR---VQEYEQGKTEFSADEDAHVIGDC 237
P F+++ + +EK G V+GI R + ++ + + V + E+ + S ED HV+
Sbjct: 36 PWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGA 95
Query: 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297
+K RELP P S +EA K RI A++S +++ P PNR ++ + +
Sbjct: 96 LKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS-LVQKLPPPNRDTMKVLFGHL 154
Query: 298 HTISSHAHENRMTPSAVAACMAPLLLR 324
I + A +N M+ ++ P LLR
Sbjct: 155 TKIVAKASKNLMSTQSLGIVFGPTLLR 181
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGD 236
D P + L FL + G +GI RQ+A+V+ R ++E E D E VI
Sbjct: 24 DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSC-RELKEKLNSGVEVHLDCESIFVIAS 82
Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
+K LR +P S + + E +I+ ++ +L+ P N LL+ + +
Sbjct: 83 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQR-LLDQLPRANVVLLRYLFGV 141
Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDF 337
+H I H+ N+MT +A C+AP +L P + ELE++F
Sbjct: 142 LHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEF 182
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD------EDAHVI 234
P +++A+R+L G+ R++ V R+Q Q E + D + A+ +
Sbjct: 37 PQSIQQAMRYLRNHCLDQVGLFRKSG----VKSRIQALRQ-MNEGAIDCVNYEGQSAYDV 91
Query: 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294
D +K R+LP + L+ Y+ K+ R+ A+++AI+ P+ NR +LQ +L
Sbjct: 92 ADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIM-LLPDENREVLQTLL 150
Query: 295 RMMHTISSHAHENRMTPSAVAACMAPLLL 323
+ +++ EN+MTP+ +A C+AP L
Sbjct: 151 YFLSDVTAAVKENQMTPTNLAVCLAPSLF 179
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAHVIGDCV 238
P F+EK + F+E G EG+ R + + + D ++++Q S + + + +
Sbjct: 38 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 97
Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
K +LP +P S LLEA KI K R+ A++ I++ F N + + ++ ++
Sbjct: 98 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE-IVKKFHPVNYDVFRYVITHLN 156
Query: 299 TISSHAHENRMTPSAVAACMAPLLLRP 325
+S N MT ++ C P L+RP
Sbjct: 157 RVSQQHKINLMTADNLSICFWPTLMRP 183
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAHVIGDCV 238
P F+EK + F+E G EG+ R + + + D ++++Q S + + + +
Sbjct: 28 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87
Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
K +LP +P S LLEA KI K R+ A++ I++ F N + + ++ ++
Sbjct: 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE-IVKKFHPVNYDVFRYVITHLN 146
Query: 299 TISSHAHENRMTPSAVAACMAPLLLRP 325
+S N MT ++ C P L+RP
Sbjct: 147 RVSQQHKINLMTADNLSICFWPTLMRP 173
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
P L + + +L+ EGI R++A+ + V Q+Y G +F + H+ +K
Sbjct: 28 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 87
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
LRELP + ++ ID + R+ A +L+T PE N ++L+ + +
Sbjct: 88 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 145
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
IS+H+ +N+MT + +A P LL
Sbjct: 146 ISAHSDQNKMTNTNLAVVFGPNLL 169
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
P L + + +L+ EGI R++A+ + V Q+Y G +F + H+ +K
Sbjct: 24 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 83
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
LRELP + ++ ID + R+ A +L+T PE N ++L+ + +
Sbjct: 84 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 141
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
IS+H+ +N+MT + +A P LL
Sbjct: 142 ISAHSDQNKMTNTNLAVVFGPNLL 165
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
P L + + +L+ EGI R++A+ + V Q+Y G +F + H+ +K
Sbjct: 63 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 122
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
LRELP + ++ ID + R+ A +L+T PE N ++L+ + +
Sbjct: 123 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 180
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
IS+H+ +N+MT + +A P LL
Sbjct: 181 ISAHSDQNKMTNTNLAVVFGPNLL 204
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
P L + + +L+ EGI R++A+ + V Q+Y G +F H+ +K
Sbjct: 27 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILK 86
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
LRELP + ++ ID + R+ A +L+T PE N ++L+ + +
Sbjct: 87 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 144
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
IS+H+ +N+MT + +A P LL
Sbjct: 145 ISAHSDQNKMTNTNLAVVFGPNLL 168
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 180 GPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY----------EQGKTEFSADE 229
G S ++K + +E G +G+ R V+ RVQ+ + +TE A+
Sbjct: 37 GFSIIKKCIHAVETRGINEQGLYRIVG----VNSRVQKLLSILMDPKTATETETEICAEW 92
Query: 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRL 289
+ I +K LR LP + + ++A K++ +E+R+S + S ++ PE NR++
Sbjct: 93 EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHS-LVHRLPEKNRQM 151
Query: 290 LQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
L ++ + ++ + +N MT + + P LLRP
Sbjct: 152 LHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRP 187
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
P L + + +L+ EGI ++A+ + V Q+Y G +F + H+ +K
Sbjct: 55 PIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 114
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
LRELP + ++ ID + R+ A +L+T PE N ++L+ + +
Sbjct: 115 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 172
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
IS+H+ +N+MT + +A P LL
Sbjct: 173 ISAHSDQNKMTNTNLAVVFGPNLL 196
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TEFSADEDAHVIGD 236
P L+ F+E++G V+GI R + + R E++ T+ +D H +G
Sbjct: 38 PQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGS 96
Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
K RELP+ + +A E R+ + I + P P+ R L+ ++R
Sbjct: 97 LCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRH 155
Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLR 324
+ ++ + M +A AP LLR
Sbjct: 156 LSLLADYCSITNMHAKNLAIVWAPNLLR 183
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
PSFL A LE EG+ R++ V + + + G+ S+ + G +K
Sbjct: 84 PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAG-LLKQ 141
Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
RELP +PA ALL+A ++ +E + + + L + +L+ + +
Sbjct: 142 FFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL--LADHTVHVLRYFFNFLRNV 199
Query: 301 SSHAHENRMTPSAVAACMAPLLLR 324
S + EN+M S +A AP LL+
Sbjct: 200 SLRSSENKMDSSNLAVIFAPNLLQ 223
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 178 DGGPSFLEKALRFLEKFGTKVEGILR--QAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235
D P L K + +EK G + + R ++++ E+ R++ + + + D HV+
Sbjct: 23 DIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAEL-RQLLDCDTPSVDLEMI-DVHVLA 80
Query: 236 DCVKHVLRELPSSPVPASCCTALLE-AYKIDRKEARISAMRSAILE-TFPEPNRRLLQRI 293
D K L +LP+ +PA+ + ++ A ++ E I ++ I + P LQ +
Sbjct: 81 DAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYL 140
Query: 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLR 324
L+ +S + +N + ++ +P+L R
Sbjct: 141 LKHFFKLSQTSSKNLLNARVLSEIFSPMLFR 171
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----KTE--FSADEDAHVI 234
PS + + +E+ G G+ R + DR V+E ++ KT S +D H I
Sbjct: 18 PSIVVHCVNEIEQRGLTETGLYR----ISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAI 73
Query: 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294
+K LR L + A +EA +I ++ I+AM A+ E P+ NR L ++
Sbjct: 74 CSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGE-LPQANRDTLAFLM 132
Query: 295 RMMHTISSHAHENRMTPSAVAACMAPLLL 323
+ ++ H +M + +A P ++
Sbjct: 133 IHLQRVAQSPH-TKMDVANLAKVFGPTIV 160
>pdb|2IZP|A Chain A, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IZP|B Chain B, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IXR|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|B Chain B, Bipd Of Burkholderia Pseudomallei
pdb|3NFT|A Chain A, Near-Atomic Resolution Analysis Of Bipd- A Component Of
The Type-Iii Secretion System Of Burkholderia
Pseudomallei
Length = 303
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 169 PILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD 228
PIL L D+ G + ++ + T VEG+ + V +V ++Q+Y K + +
Sbjct: 121 PILQGLVDVIG------QGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMK 174
Query: 229 EDAHVIGDCVKHVLRELPSSPVPASCCTA 257
D I ++ V+ LP+ +P A
Sbjct: 175 IDGGKIKALIQQVIDHLPTMQLPKGADIA 203
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 14/82 (17%)
Query: 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL-LTVLFPDGR 98
RWF+L ++ L++F+ND E L G +++ ++ ++ +K+ + ++ D
Sbjct: 82 RWFVLRQSKLMYFEND--------SEEKLK-GTVEVRSAKEIIDNTNKENGIDIIMAD-- 130
Query: 99 DGRAFTLKAETSEDLYEWKTAL 120
R F L AE+ ED +W + L
Sbjct: 131 --RTFHLIAESPEDASQWFSVL 150
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 98 RDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131
RDG+ +L AE+++D WK L+ + PS+
Sbjct: 87 RDGKTISLCAESTDDCLAWKFTLQDSRTSGPSSG 120
>pdb|2P0D|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,4,5)p3
pdb|2P0F|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,3,5)p3
pdb|2P0H|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,3,4)p3
Length = 129
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 41 WFILTRTSLVFFKNDPSALPQRGG-------EVNLTLGGIDLNNSGSVVVREDKKLLTVL 93
W +LT SLVF++ P P G E ++ L G L + + R + VL
Sbjct: 38 WVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRN-----VL 92
Query: 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
G F L+++ +L W AL +
Sbjct: 93 HIRTIPGHEFLLQSDHETELRAWHRALRTVI 123
>pdb|2Q01|A Chain A, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
pdb|2Q01|B Chain B, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
pdb|2Q01|C Chain C, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
Length = 497
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 79 GSVVVREDKKLLTVLFPDGRDGRAFTLKAETS-EDLYEWKTALE 121
G V+ + + F D R RAF AETS +D+Y WK+ LE
Sbjct: 190 GGHVITAYRPDAVIDFEDERSPRAFERFAETSGQDVYSWKSYLE 233
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 59 LPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKT 118
L ++G +V GG LN S + + D LTV + +F + + L W
Sbjct: 17 LSEKGADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSF-----SQQXLDAWHG 71
Query: 119 A-LELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVK 162
++ +L Q L G++ +T+ T E +F+ WR++ K
Sbjct: 72 ENVDTSLTQRXENRL----PGLYYIETDSTGERTFYYWRNEAAAK 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,669,363
Number of Sequences: 62578
Number of extensions: 700196
Number of successful extensions: 1714
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1682
Number of HSP's gapped (non-prelim): 30
length of query: 761
length of database: 14,973,337
effective HSP length: 106
effective length of query: 655
effective length of database: 8,340,069
effective search space: 5462745195
effective search space used: 5462745195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)