Query 004320
Match_columns 761
No_of_seqs 510 out of 2405
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 2.5E-45 5.4E-50 417.7 19.9 618 97-732 286-947 (1100)
2 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 4.2E-40 9E-45 332.8 18.5 192 165-376 1-192 (192)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 6.2E-40 1.3E-44 332.1 19.8 189 166-372 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.3E-39 2.8E-44 332.0 20.4 197 163-375 2-202 (203)
5 KOG1451 Oligophrenin-1 and rel 100.0 3.8E-38 8.3E-43 344.7 33.1 304 14-376 260-571 (812)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 3E-39 6.6E-44 328.3 19.6 191 164-372 1-199 (199)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 4E-39 8.6E-44 331.4 19.8 200 165-376 1-209 (216)
8 cd04407 RhoGAP_myosin_IXB RhoG 100.0 6.1E-39 1.3E-43 322.7 20.0 185 166-367 1-186 (186)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 5.9E-39 1.3E-43 330.7 19.5 210 163-376 2-218 (220)
10 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 4.8E-39 1E-43 322.4 17.4 176 166-374 1-181 (182)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 9.6E-39 2.1E-43 323.5 18.3 190 164-367 1-195 (195)
12 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.4E-38 3.1E-43 326.6 18.7 192 166-376 1-211 (213)
13 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 2.3E-38 5E-43 319.0 18.7 184 164-367 1-188 (188)
14 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.4E-38 7.4E-43 317.6 19.0 183 166-367 1-187 (187)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 7.7E-38 1.7E-42 317.3 20.4 190 165-372 1-196 (196)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 5.1E-38 1.1E-42 318.3 19.0 190 162-372 2-195 (195)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 7.2E-38 1.6E-42 318.4 19.3 186 166-367 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 6.6E-38 1.4E-42 315.2 18.3 184 166-366 1-185 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.2E-37 2.7E-42 317.1 19.2 195 165-376 1-199 (202)
20 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 1.7E-37 3.6E-42 321.1 18.2 188 165-372 1-225 (225)
21 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.6E-37 5.7E-42 315.5 19.4 187 177-376 6-204 (206)
22 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.6E-37 5.7E-42 312.2 18.3 185 166-372 1-192 (192)
23 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 2.4E-37 5.3E-42 312.1 17.8 177 165-374 1-189 (190)
24 cd04377 RhoGAP_myosin_IX RhoGA 100.0 4E-37 8.6E-42 309.6 19.3 185 166-367 1-186 (186)
25 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.7E-37 8E-42 314.0 18.9 187 166-367 1-203 (203)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 4.7E-37 1E-41 308.9 19.3 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 7.1E-37 1.5E-41 313.5 19.1 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.8E-36 4E-41 307.0 20.1 163 166-329 1-167 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.6E-36 3.6E-41 305.9 19.0 184 164-367 1-189 (189)
30 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.2E-36 4.8E-41 309.1 18.5 186 166-376 1-200 (208)
31 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.9E-36 1.1E-40 306.1 20.4 195 166-368 1-206 (207)
32 KOG4407 Predicted Rho GTPase-a 100.0 1.1E-36 2.3E-41 352.6 10.6 339 18-376 922-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 2.3E-35 4.9E-40 296.4 18.9 180 167-368 2-184 (184)
34 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 2.1E-35 4.5E-40 302.7 17.9 189 166-374 1-210 (212)
35 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 4.6E-35 9.9E-40 296.1 18.9 178 177-371 14-192 (193)
36 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 5.7E-35 1.2E-39 297.4 17.8 171 178-367 26-203 (203)
37 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 8.6E-35 1.9E-39 292.9 18.1 178 166-367 1-187 (187)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.9E-34 1.1E-38 288.7 17.8 177 170-368 5-184 (200)
39 KOG1117 Rho- and Arf-GTPase ac 100.0 2.2E-32 4.7E-37 309.1 17.9 324 16-376 489-900 (1186)
40 KOG1450 Predicted Rho GTPase-a 100.0 1.5E-31 3.3E-36 303.0 19.7 320 34-373 270-649 (650)
41 smart00324 RhoGAP GTPase-activ 100.0 5.3E-31 1.1E-35 261.2 18.4 170 179-367 2-173 (174)
42 KOG4270 GTPase-activator prote 100.0 8.5E-30 1.8E-34 288.3 29.0 204 159-378 140-349 (577)
43 KOG2200 Tumour suppressor prot 100.0 1.9E-30 4.2E-35 286.2 14.9 209 162-376 297-514 (674)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.1E-29 2.3E-34 262.2 16.6 158 163-327 10-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 4.5E-29 9.8E-34 244.8 18.6 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 4.7E-30 1E-34 291.9 12.4 190 155-377 888-1088(1112)
47 PF00620 RhoGAP: RhoGAP domain 100.0 2E-28 4.3E-33 236.8 10.9 145 181-326 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 1.3E-27 2.9E-32 256.0 15.4 201 157-377 245-450 (467)
49 KOG2710 Rho GTPase-activating 99.9 1E-26 2.3E-31 254.3 15.3 204 162-376 63-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 6.6E-26 1.4E-30 253.1 8.7 241 159-422 76-316 (741)
51 PF14389 Lzipper-MIP1: Leucine 99.9 3.1E-24 6.7E-29 190.0 10.4 87 614-700 1-88 (88)
52 KOG1453 Chimaerin and related 99.9 5.5E-24 1.2E-28 257.7 12.1 162 165-327 602-771 (918)
53 KOG3564 GTPase-activating prot 99.9 2.4E-22 5.2E-27 217.5 15.2 147 178-326 360-507 (604)
54 KOG4271 Rho-GTPase activating 99.7 4.2E-18 9.1E-23 196.2 7.9 161 162-323 914-1076(1100)
55 KOG1452 Predicted Rho GTPase-a 99.7 3.4E-17 7.5E-22 170.3 11.5 164 163-327 182-353 (442)
56 cd04405 RhoGAP_BRCC3-like RhoG 99.7 6.1E-16 1.3E-20 157.9 13.1 185 164-376 20-232 (235)
57 cd01251 PH_centaurin_alpha Cen 99.7 5E-16 1.1E-20 142.1 11.2 91 21-125 1-101 (103)
58 cd01233 Unc104 Unc-104 pleckst 99.7 7.7E-16 1.7E-20 140.0 11.8 91 19-124 2-98 (100)
59 cd01264 PH_melted Melted pleck 99.6 1.9E-15 4.2E-20 137.2 10.1 90 21-123 2-100 (101)
60 cd01260 PH_CNK Connector enhan 99.6 7E-15 1.5E-19 132.2 11.1 92 21-123 2-96 (96)
61 cd01238 PH_Tec Tec pleckstrin 99.6 6.7E-15 1.5E-19 135.3 9.9 94 20-123 1-106 (106)
62 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 1.1E-14 2.4E-19 131.2 10.7 88 22-123 2-93 (95)
63 cd01235 PH_SETbf Set binding f 99.6 1.5E-14 3.3E-19 130.7 10.2 90 21-124 1-101 (101)
64 cd01252 PH_cytohesin Cytohesin 99.5 4.4E-14 9.6E-19 133.5 12.2 99 20-129 1-118 (125)
65 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 3.7E-14 8.1E-19 143.4 11.6 144 182-327 8-166 (198)
66 cd01247 PH_GPBP Goodpasture an 99.5 4.2E-14 9.1E-19 126.6 10.2 89 22-122 2-90 (91)
67 cd01236 PH_outspread Outspread 99.5 6.9E-14 1.5E-18 128.0 9.1 89 21-121 1-101 (104)
68 cd01241 PH_Akt Akt pleckstrin 99.5 1.5E-13 3.2E-18 125.6 10.8 97 19-123 1-101 (102)
69 cd01257 PH_IRS Insulin recepto 99.5 1.4E-13 3.1E-18 125.3 9.8 91 19-122 2-100 (101)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.5 3.3E-13 7.1E-18 124.4 10.1 89 21-123 1-107 (108)
71 cd01246 PH_oxysterol_bp Oxyste 99.4 5.7E-13 1.2E-17 117.4 10.4 91 21-123 1-91 (91)
72 cd01250 PH_centaurin Centaurin 99.4 1.4E-12 3E-17 115.6 9.5 92 21-122 1-93 (94)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 1.8E-12 4E-17 117.5 9.5 77 34-123 18-98 (98)
74 cd01245 PH_RasGAP_CG5898 RAS G 99.3 2.8E-12 6.2E-17 116.1 8.4 89 21-122 1-97 (98)
75 cd01263 PH_anillin Anillin Ple 99.3 5.6E-12 1.2E-16 118.5 9.9 97 20-122 2-121 (122)
76 PF00169 PH: PH domain; Inter 99.3 1.9E-11 4.1E-16 108.4 11.1 101 19-124 1-103 (104)
77 cd01253 PH_beta_spectrin Beta- 99.3 1.4E-11 3.1E-16 112.3 9.5 94 22-122 2-103 (104)
78 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 3.4E-11 7.4E-16 112.6 11.3 101 21-125 2-112 (117)
79 KOG4370 Ral-GTPase effector RL 99.2 2.2E-11 4.7E-16 131.7 9.4 170 179-381 70-280 (514)
80 KOG0930 Guanine nucleotide exc 99.2 3.5E-11 7.5E-16 124.2 9.4 101 19-129 260-380 (395)
81 PF15413 PH_11: Pleckstrin hom 99.2 1.1E-10 2.4E-15 108.5 9.4 97 21-123 1-112 (112)
82 cd01237 Unc112 Unc-112 pleckst 99.1 2.8E-10 6.1E-15 103.7 9.8 90 29-123 12-102 (106)
83 KOG3565 Cdc42-interacting prot 99.1 1.7E-10 3.8E-15 134.7 8.6 146 179-326 217-366 (640)
84 cd01219 PH_FGD FGD (faciogenit 99.1 8.4E-10 1.8E-14 100.7 11.2 98 19-125 2-100 (101)
85 cd01254 PH_PLD Phospholipase D 99.0 9.1E-10 2E-14 103.8 10.0 76 36-123 32-121 (121)
86 PF15410 PH_9: Pleckstrin homo 99.0 8.3E-10 1.8E-14 103.7 8.5 103 20-124 1-118 (119)
87 PF15409 PH_8: Pleckstrin homo 99.0 2.3E-09 5.1E-14 95.2 9.6 86 23-123 1-88 (89)
88 smart00233 PH Pleckstrin homol 99.0 6.7E-09 1.4E-13 90.3 11.9 97 19-124 1-101 (102)
89 cd01249 PH_oligophrenin Oligop 98.8 2.6E-08 5.7E-13 90.6 10.2 97 21-121 1-102 (104)
90 cd01256 PH_dynamin Dynamin ple 98.8 2.8E-08 6.1E-13 88.5 9.2 99 19-123 1-104 (110)
91 cd00821 PH Pleckstrin homology 98.7 4.4E-08 9.6E-13 84.3 8.1 93 21-122 1-95 (96)
92 cd00900 PH-like Pleckstrin hom 98.7 1.2E-07 2.5E-12 82.3 10.2 96 22-123 2-99 (99)
93 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 1.6E-08 3.4E-13 90.8 4.6 98 20-127 3-113 (117)
94 KOG0690 Serine/threonine prote 98.6 6.9E-08 1.5E-12 102.8 6.0 108 14-127 10-119 (516)
95 KOG4724 Predicted Rho GTPase-a 98.6 5.2E-08 1.1E-12 111.0 4.9 168 159-326 410-589 (741)
96 cd01243 PH_MRCK MRCK (myotonic 98.5 1.7E-06 3.7E-11 80.4 11.9 104 20-123 3-118 (122)
97 cd01220 PH_CDEP Chondrocyte-de 98.5 1.6E-06 3.4E-11 79.1 11.2 97 19-125 2-98 (99)
98 KOG1090 Predicted dual-specifi 98.4 9.4E-08 2E-12 111.9 2.6 95 16-124 1631-1731(1732)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 5.7E-07 1.2E-11 82.5 7.1 102 21-124 2-108 (114)
100 cd01242 PH_ROK Rok (Rho- assoc 98.3 8.8E-06 1.9E-10 74.6 11.7 103 21-125 2-111 (112)
101 KOG3640 Actin binding protein 98.2 1.9E-06 4.1E-11 101.5 6.4 103 17-125 988-1107(1116)
102 PF14593 PH_3: PH domain; PDB: 98.2 1.4E-05 3E-10 73.5 10.3 91 16-126 10-101 (104)
103 PF08101 DUF1708: Domain of un 98.2 1.1E-05 2.4E-10 90.6 11.5 146 181-328 9-169 (420)
104 KOG2059 Ras GTPase-activating 98.1 7.2E-06 1.6E-10 94.6 8.5 114 16-144 562-683 (800)
105 KOG3751 Growth factor receptor 97.8 5.4E-05 1.2E-09 85.0 7.4 107 16-125 314-425 (622)
106 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00044 9.6E-09 63.7 10.7 99 17-126 2-100 (104)
107 KOG0932 Guanine nucleotide exc 97.6 2.2E-05 4.8E-10 88.4 2.0 109 14-125 501-618 (774)
108 PLN00188 enhanced disease resi 97.6 0.00024 5.1E-09 83.7 10.0 104 17-127 2-112 (719)
109 cd01261 PH_SOS Son of Sevenles 97.6 0.00062 1.4E-08 63.5 10.5 102 18-126 3-111 (112)
110 cd01239 PH_PKD Protein kinase 97.5 0.0003 6.4E-09 65.2 7.6 90 20-123 1-117 (117)
111 PTZ00267 NIMA-related protein 97.5 0.00026 5.6E-09 81.6 8.5 101 16-125 374-477 (478)
112 KOG0521 Putative GTPase activa 97.3 0.00018 4E-09 86.9 4.9 99 17-127 272-371 (785)
113 cd01258 PH_syntrophin Syntroph 97.3 0.00063 1.4E-08 62.9 7.2 86 33-122 15-107 (108)
114 cd01262 PH_PDK1 3-Phosphoinosi 96.9 0.0066 1.4E-07 54.1 8.8 87 19-124 1-88 (89)
115 KOG0248 Cytoplasmic protein Ma 96.8 0.0008 1.7E-08 77.7 3.1 96 17-125 247-342 (936)
116 cd01240 PH_beta-ARK Beta adren 96.7 0.0025 5.5E-08 58.4 4.7 95 18-126 2-100 (116)
117 KOG3543 Ca2+-dependent activat 96.6 0.00047 1E-08 78.5 -0.5 109 15-127 460-568 (1218)
118 PF12814 Mcp5_PH: Meiotic cell 96.5 0.037 8E-07 52.5 11.7 89 34-125 27-122 (123)
119 PTZ00283 serine/threonine prot 96.4 0.0083 1.8E-07 69.7 8.3 106 15-125 369-490 (496)
120 cd01222 PH_clg Clg (common-sit 96.3 0.05 1.1E-06 49.6 10.9 93 18-124 3-95 (97)
121 PLN02866 phospholipase D 96.3 0.025 5.4E-07 69.6 11.5 87 35-128 216-311 (1068)
122 PF15408 PH_7: Pleckstrin homo 96.2 0.0017 3.7E-08 56.9 0.8 87 22-122 1-95 (104)
123 KOG3723 PH domain protein Melt 95.8 0.0053 1.1E-07 70.0 2.6 95 20-127 736-839 (851)
124 KOG1453 Chimaerin and related 95.8 0.0054 1.2E-07 76.1 3.0 155 165-320 462-658 (918)
125 KOG3531 Rho guanine nucleotide 95.7 0.0037 8.1E-08 73.9 1.2 81 35-123 938-1018(1036)
126 PF15406 PH_6: Pleckstrin homo 95.2 0.033 7.2E-07 51.3 5.1 69 40-121 42-110 (112)
127 cd01224 PH_Collybistin Collybi 95.1 0.3 6.5E-06 45.4 11.0 100 19-122 2-105 (109)
128 KOG1739 Serine/threonine prote 95.1 0.026 5.7E-07 63.5 4.9 94 19-125 24-117 (611)
129 cd01221 PH_ephexin Ephexin Ple 94.8 0.33 7.2E-06 46.2 10.9 97 19-121 3-119 (125)
130 cd01228 PH_BCR-related BCR (br 94.7 0.14 3.1E-06 46.1 7.7 90 18-124 2-94 (96)
131 PF15404 PH_4: Pleckstrin homo 94.4 0.18 3.9E-06 51.2 8.7 34 21-56 1-34 (185)
132 cd01232 PH_TRIO Trio pleckstri 93.8 1.3 2.8E-05 41.6 12.5 87 38-125 25-113 (114)
133 KOG1449 Predicted Rho GTPase-a 93.5 0.016 3.4E-07 66.5 -1.0 72 294-376 1-74 (670)
134 KOG4424 Predicted Rho/Rac guan 93.4 0.087 1.9E-06 60.8 4.7 105 14-127 267-372 (623)
135 KOG0804 Cytoplasmic Zn-finger 93.1 0.65 1.4E-05 52.4 10.6 111 585-702 347-457 (493)
136 KOG1449 Predicted Rho GTPase-a 92.2 0.027 5.8E-07 64.7 -1.5 174 163-376 207-390 (670)
137 COG1579 Zn-ribbon protein, pos 91.0 5.8 0.00013 42.0 14.3 70 582-651 10-82 (239)
138 cd01231 PH_Lnk LNK-family Plec 90.6 1 2.2E-05 41.2 7.1 83 34-122 18-106 (107)
139 KOG1737 Oxysterol-binding prot 90.1 0.19 4.2E-06 60.8 2.9 90 20-123 78-167 (799)
140 KOG1117 Rho- and Arf-GTPase ac 90.1 0.17 3.7E-06 60.6 2.3 93 17-125 85-178 (1186)
141 cd01226 PH_exo84 Exocyst compl 90.0 2.4 5.1E-05 39.0 9.1 79 38-124 20-98 (100)
142 cd01227 PH_Dbs Dbs (DBL's big 89.9 3.1 6.7E-05 40.2 10.4 87 38-125 30-116 (133)
143 cd01223 PH_Vav Vav pleckstrin 89.7 1.7 3.6E-05 41.0 8.0 86 37-125 20-112 (116)
144 PF10186 Atg14: UV radiation r 89.7 3.2 7E-05 44.5 11.7 122 579-701 24-154 (302)
145 PF15405 PH_5: Pleckstrin homo 89.6 0.83 1.8E-05 44.2 6.3 35 89-123 100-134 (135)
146 KOG2391 Vacuolar sorting prote 89.3 26 0.00056 38.8 17.7 113 586-700 211-341 (365)
147 cd01225 PH_Cool_Pix Cool (clon 89.3 2.1 4.5E-05 40.0 8.2 82 37-124 28-109 (111)
148 PF12240 Angiomotin_C: Angiomo 89.0 2.5 5.5E-05 43.3 9.3 71 606-689 13-87 (205)
149 KOG3549 Syntrophins (type gamm 88.9 0.7 1.5E-05 50.5 5.6 102 14-125 276-387 (505)
150 KOG0995 Centromere-associated 86.7 9.8 0.00021 44.6 13.4 103 580-699 219-327 (581)
151 cd00089 HR1 Protein kinase C-r 86.1 2 4.3E-05 36.8 5.8 67 622-700 3-69 (72)
152 KOG1738 Membrane-associated gu 84.3 0.18 3.8E-06 59.0 -2.0 57 19-79 562-619 (638)
153 PF09726 Macoilin: Transmembra 83.5 1.2E+02 0.0026 37.2 31.7 34 664-697 543-576 (697)
154 PF15619 Lebercilin: Ciliary p 82.1 9.7 0.00021 39.1 9.8 69 623-691 120-189 (194)
155 PF09726 Macoilin: Transmembra 81.1 1.5E+02 0.0032 36.6 20.8 10 581-590 417-426 (697)
156 PF00038 Filament: Intermediat 80.9 10 0.00023 41.2 10.3 65 585-649 50-124 (312)
157 KOG3551 Syntrophins (type beta 80.6 1.1 2.4E-05 49.7 2.5 105 18-127 291-404 (506)
158 PF15411 PH_10: Pleckstrin hom 80.5 22 0.00047 33.6 10.8 97 20-120 8-116 (116)
159 KOG4047 Docking protein 1 (p62 79.3 0.9 2E-05 51.7 1.3 103 17-124 6-117 (429)
160 PF00038 Filament: Intermediat 78.5 64 0.0014 35.0 15.5 114 581-694 74-194 (312)
161 PRK10884 SH3 domain-containing 77.4 23 0.0005 36.7 10.9 35 667-701 140-174 (206)
162 KOG4807 F-actin binding protei 75.9 0.048 1E-06 59.9 -9.5 113 583-698 419-537 (593)
163 KOG2129 Uncharacterized conser 74.7 11 0.00025 42.3 8.1 69 584-652 210-316 (552)
164 KOG0248 Cytoplasmic protein Ma 73.6 1.3 2.8E-05 52.3 0.7 87 20-124 260-348 (936)
165 PRK11637 AmiB activator; Provi 72.3 26 0.00055 40.2 10.8 35 670-704 100-134 (428)
166 PF09755 DUF2046: Uncharacteri 72.2 1E+02 0.0022 34.0 14.4 28 630-657 180-207 (310)
167 cd01248 PH_PLC Phospholipase C 72.0 30 0.00065 32.1 9.3 33 89-122 80-114 (115)
168 KOG0517 Beta-spectrin [Cytoske 71.9 0.075 1.6E-06 67.7 -10.3 102 19-125 2299-2410(2473)
169 KOG0996 Structural maintenance 71.3 1.4E+02 0.003 38.3 16.9 77 612-696 811-894 (1293)
170 PF07106 TBPIP: Tat binding pr 70.7 17 0.00036 36.3 7.7 67 620-694 71-137 (169)
171 TIGR03185 DNA_S_dndD DNA sulfu 70.7 52 0.0011 39.9 13.4 68 584-652 184-254 (650)
172 PF08317 Spc7: Spc7 kinetochor 69.7 73 0.0016 35.2 13.2 39 662-700 205-243 (325)
173 PF10168 Nup88: Nuclear pore c 68.8 60 0.0013 40.0 13.3 109 583-701 552-667 (717)
174 KOG4674 Uncharacterized conser 68.7 21 0.00046 47.4 9.7 92 608-699 792-884 (1822)
175 KOG0161 Myosin class II heavy 68.7 78 0.0017 42.9 14.9 78 619-696 1011-1092(1930)
176 PF00769 ERM: Ezrin/radixin/mo 68.2 1.2E+02 0.0027 32.2 14.1 112 586-701 2-117 (246)
177 PRK11637 AmiB activator; Provi 67.3 1.3E+02 0.0029 34.4 15.2 88 580-695 168-255 (428)
178 TIGR01843 type_I_hlyD type I s 67.2 83 0.0018 35.3 13.4 23 673-695 210-232 (423)
179 PF03148 Tektin: Tektin family 66.7 41 0.00089 38.2 10.7 107 587-700 231-351 (384)
180 PF10267 Tmemb_cc2: Predicted 66.5 2.3E+02 0.0049 32.5 16.3 73 622-707 238-310 (395)
181 PF10186 Atg14: UV radiation r 66.5 1.3E+02 0.0029 32.0 14.2 44 584-627 65-108 (302)
182 PF12240 Angiomotin_C: Angiomo 65.9 1.6E+02 0.0034 30.6 13.4 116 582-697 17-153 (205)
183 COG5185 HEC1 Protein involved 65.2 86 0.0019 36.2 12.4 40 662-701 326-365 (622)
184 PF12761 End3: Actin cytoskele 65.1 87 0.0019 32.3 11.5 115 560-700 74-194 (195)
185 KOG3727 Mitogen inducible gene 65.1 0.77 1.7E-05 53.0 -3.4 87 34-124 372-458 (664)
186 PF08826 DMPK_coil: DMPK coile 65.0 29 0.00064 29.1 6.7 27 613-639 31-57 (61)
187 COG1579 Zn-ribbon protein, pos 64.7 1.3E+02 0.0029 32.0 13.2 26 613-638 95-120 (239)
188 PF02185 HR1: Hr1 repeat; Int 64.3 20 0.00043 30.4 5.8 60 628-701 1-61 (70)
189 PF14197 Cep57_CLD_2: Centroso 64.3 29 0.00062 29.8 6.7 55 585-639 1-65 (69)
190 PHA02562 46 endonuclease subun 63.8 1.4E+02 0.0029 35.2 14.8 30 665-694 298-327 (562)
191 KOG4807 F-actin binding protei 61.4 1.7E+02 0.0038 33.1 13.6 82 35-125 33-115 (593)
192 PF05911 DUF869: Plant protein 61.3 56 0.0012 40.4 11.1 100 582-702 596-695 (769)
193 PF07798 DUF1640: Protein of u 61.1 1.8E+02 0.0038 29.3 13.0 35 608-642 67-101 (177)
194 PF07888 CALCOCO1: Calcium bin 59.7 41 0.0009 39.7 9.2 51 594-648 141-191 (546)
195 TIGR01000 bacteriocin_acc bact 59.7 1.5E+02 0.0033 34.2 13.9 43 609-651 160-202 (457)
196 KOG4236 Serine/threonine prote 59.1 7.9 0.00017 45.2 3.2 98 15-124 409-523 (888)
197 PLN02372 violaxanthin de-epoxi 58.2 31 0.00068 39.1 7.5 88 576-685 355-447 (455)
198 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.1 1.8E+02 0.0038 27.9 14.5 59 580-638 19-83 (132)
199 PRK00409 recombination and DNA 57.9 1.3E+02 0.0029 37.4 13.7 97 579-695 517-622 (782)
200 cd01255 PH_TIAM TIAM Pleckstri 57.8 70 0.0015 31.4 8.8 107 18-126 27-156 (160)
201 PF08614 ATG16: Autophagy prot 57.5 1.2E+02 0.0025 31.0 11.1 98 586-700 85-185 (194)
202 PF05508 Ran-binding: RanGTP-b 57.3 69 0.0015 35.2 9.7 81 585-691 45-136 (302)
203 PF06637 PV-1: PV-1 protein (P 56.2 1.3E+02 0.0028 34.0 11.6 60 580-639 302-374 (442)
204 PF15619 Lebercilin: Ciliary p 55.2 2E+02 0.0043 29.6 12.3 115 582-697 12-149 (194)
205 PF12128 DUF3584: Protein of u 55.1 1.2E+02 0.0025 39.8 13.1 111 580-700 382-496 (1201)
206 PHA02562 46 endonuclease subun 54.4 1.4E+02 0.0031 35.1 12.8 36 675-713 257-292 (562)
207 KOG4424 Predicted Rho/Rac guan 54.4 15 0.00033 43.1 4.5 84 34-125 510-596 (623)
208 KOG0705 GTPase-activating prot 54.0 9.9 0.00022 44.5 2.9 35 89-125 446-480 (749)
209 PRK11519 tyrosine kinase; Prov 53.5 64 0.0014 39.7 9.9 36 604-639 250-285 (719)
210 TIGR02231 conserved hypothetic 53.4 33 0.00072 40.4 7.3 37 664-700 136-172 (525)
211 PF13851 GAS: Growth-arrest sp 52.4 1.8E+02 0.0039 30.1 11.6 101 583-694 28-128 (201)
212 PF02841 GBP_C: Guanylate-bind 52.2 2.1E+02 0.0046 31.1 12.8 36 607-642 222-257 (297)
213 KOG0161 Myosin class II heavy 51.7 2.4E+02 0.0052 38.6 15.0 66 586-651 856-931 (1930)
214 PF06637 PV-1: PV-1 protein (P 51.6 2.7E+02 0.0059 31.6 13.1 95 586-703 282-379 (442)
215 PF04156 IncA: IncA protein; 51.4 2.7E+02 0.0058 27.9 15.1 43 581-623 80-122 (191)
216 PF02403 Seryl_tRNA_N: Seryl-t 51.3 1.2E+02 0.0026 27.7 9.1 69 624-699 32-100 (108)
217 PF11083 Streptin-Immun: Lanti 50.4 68 0.0015 29.5 7.0 59 584-642 1-73 (99)
218 PF03962 Mnd1: Mnd1 family; I 49.8 93 0.002 31.8 8.9 28 666-693 103-130 (188)
219 PF11559 ADIP: Afadin- and alp 49.8 2.3E+02 0.0051 27.4 11.5 21 677-697 130-150 (151)
220 PF08232 Striatin: Striatin fa 49.4 49 0.0011 32.0 6.5 52 587-649 23-74 (134)
221 PRK09039 hypothetical protein; 49.1 2.8E+02 0.0062 31.0 13.4 18 583-600 47-64 (343)
222 PF15175 SPATA24: Spermatogene 49.1 31 0.00068 33.8 4.9 82 629-713 39-127 (153)
223 PF09304 Cortex-I_coil: Cortex 48.9 1.1E+02 0.0024 28.5 8.3 16 584-599 4-19 (107)
224 PF09730 BicD: Microtubule-ass 48.9 1.7E+02 0.0036 36.1 12.1 25 575-599 13-37 (717)
225 PF15188 CCDC-167: Coiled-coil 48.6 1E+02 0.0023 27.6 7.8 40 662-707 31-70 (85)
226 COG2433 Uncharacterized conser 48.2 96 0.0021 37.1 9.6 102 582-683 429-541 (652)
227 KOG0018 Structural maintenance 48.1 3.1E+02 0.0067 35.1 14.2 116 580-706 650-765 (1141)
228 KOG4674 Uncharacterized conser 48.0 1.5E+02 0.0033 39.9 12.2 115 581-701 1256-1381(1822)
229 COG1196 Smc Chromosome segrega 47.6 2.9E+02 0.0063 36.1 15.0 9 101-109 110-118 (1163)
230 KOG1853 LIS1-interacting prote 46.9 2.1E+02 0.0045 30.7 10.9 94 605-698 68-182 (333)
231 KOG3850 Predicted membrane pro 46.8 4.9E+02 0.011 29.7 14.2 71 624-707 288-358 (455)
232 PRK10884 SH3 domain-containing 46.5 2.1E+02 0.0046 29.7 11.0 30 671-700 137-166 (206)
233 KOG1264 Phospholipase C [Lipid 46.4 26 0.00057 42.8 4.8 41 87-127 873-913 (1267)
234 KOG0976 Rho/Rac1-interacting s 46.1 1.9E+02 0.0042 35.7 11.6 86 581-694 322-407 (1265)
235 PF09486 HrpB7: Bacterial type 46.0 3.2E+02 0.007 27.3 12.2 101 599-700 11-113 (158)
236 PF03938 OmpH: Outer membrane 45.6 2.1E+02 0.0045 27.7 10.4 77 605-703 34-110 (158)
237 KOG4460 Nuclear pore complex, 45.2 2.7E+02 0.0059 33.0 12.3 119 581-709 573-698 (741)
238 KOG3523 Putative guanine nucle 44.6 48 0.001 39.4 6.4 82 34-121 496-591 (695)
239 PF14992 TMCO5: TMCO5 family 44.4 1.3E+02 0.0027 32.9 9.1 32 661-692 111-142 (280)
240 smart00787 Spc7 Spc7 kinetocho 43.9 4.7E+02 0.01 28.9 13.8 48 580-635 146-193 (312)
241 PF08317 Spc7: Spc7 kinetochor 43.6 4.9E+02 0.011 28.8 14.5 23 616-638 179-201 (325)
242 KOG0996 Structural maintenance 43.4 2.9E+02 0.0063 35.7 13.1 44 611-654 395-438 (1293)
243 KOG0993 Rab5 GTPase effector R 43.4 1.2E+02 0.0027 34.4 9.0 87 612-713 105-198 (542)
244 KOG0977 Nuclear envelope prote 42.9 2.1E+02 0.0046 34.1 11.4 78 620-700 105-189 (546)
245 COG3937 Uncharacterized conser 42.7 72 0.0016 29.7 6.0 23 675-697 85-107 (108)
246 KOG3520 Predicted guanine nucl 42.7 38 0.00082 43.2 5.6 46 85-130 682-727 (1167)
247 PF14282 FlxA: FlxA-like prote 42.7 1.9E+02 0.0041 26.8 9.0 63 623-705 21-83 (106)
248 PF10211 Ax_dynein_light: Axon 42.3 3.9E+02 0.0085 27.3 13.2 67 615-697 121-187 (189)
249 PRK03918 chromosome segregatio 42.1 4.2E+02 0.0091 33.1 14.9 12 311-322 14-25 (880)
250 PF13094 CENP-Q: CENP-Q, a CEN 42.1 3E+02 0.0065 27.0 11.0 73 578-650 16-92 (160)
251 PRK09841 cryptic autophosphory 42.0 89 0.0019 38.5 8.7 23 669-691 342-364 (726)
252 PRK02224 chromosome segregatio 41.8 3.2E+02 0.0069 34.3 13.7 13 108-120 109-121 (880)
253 PF07798 DUF1640: Protein of u 41.6 1.6E+02 0.0034 29.6 9.1 76 606-690 76-155 (177)
254 KOG4593 Mitotic checkpoint pro 41.4 5.7E+02 0.012 31.3 14.6 114 582-696 248-393 (716)
255 TIGR02168 SMC_prok_B chromosom 41.2 4.4E+02 0.0095 33.7 15.1 25 673-697 915-939 (1179)
256 PF12128 DUF3584: Protein of u 41.0 4E+02 0.0087 35.0 14.8 42 558-601 582-623 (1201)
257 PF06785 UPF0242: Uncharacteri 41.0 3.4E+02 0.0073 30.3 11.7 86 599-701 137-222 (401)
258 PRK04863 mukB cell division pr 41.0 2.1E+02 0.0045 38.4 12.1 31 623-653 515-545 (1486)
259 PF14362 DUF4407: Domain of un 40.6 5.1E+02 0.011 28.1 15.2 85 608-697 129-213 (301)
260 PF06248 Zw10: Centromere/kine 40.6 3.3E+02 0.0071 32.7 13.0 153 579-751 11-166 (593)
261 KOG1060 Vesicle coat complex A 40.6 8.4E+02 0.018 30.6 18.0 133 164-300 321-478 (968)
262 KOG3915 Transcription regulato 40.5 1.2E+02 0.0026 35.0 8.5 64 587-652 501-566 (641)
263 PRK13182 racA polar chromosome 40.3 1.4E+02 0.0031 30.2 8.4 29 611-639 82-110 (175)
264 PF09787 Golgin_A5: Golgin sub 40.3 4.1E+02 0.0089 31.4 13.5 100 599-702 210-310 (511)
265 PLN02678 seryl-tRNA synthetase 40.1 83 0.0018 36.5 7.6 71 623-700 35-105 (448)
266 PF07106 TBPIP: Tat binding pr 40.0 95 0.0021 30.8 7.2 57 583-639 73-134 (169)
267 PRK10929 putative mechanosensi 39.6 5.6E+02 0.012 33.4 15.2 109 580-692 171-284 (1109)
268 KOG2077 JNK/SAPK-associated pr 39.4 68 0.0015 37.9 6.5 54 586-639 319-375 (832)
269 TIGR03007 pepcterm_ChnLen poly 39.4 6.7E+02 0.014 29.1 15.3 33 669-701 313-345 (498)
270 PRK13729 conjugal transfer pil 39.3 80 0.0017 36.8 7.1 59 572-637 56-120 (475)
271 PF08581 Tup_N: Tup N-terminal 39.3 1.3E+02 0.0029 26.5 7.0 52 588-639 24-75 (79)
272 TIGR02169 SMC_prok_A chromosom 39.0 4.9E+02 0.011 33.4 15.1 18 181-198 116-133 (1164)
273 TIGR01010 BexC_CtrB_KpsE polys 38.9 2.8E+02 0.006 30.9 11.4 21 619-639 168-188 (362)
274 COG2433 Uncharacterized conser 38.9 3.9E+02 0.0084 32.2 12.6 87 582-700 422-508 (652)
275 KOG1937 Uncharacterized conser 38.8 4E+02 0.0088 30.9 12.3 129 572-701 283-424 (521)
276 PRK02224 chromosome segregatio 38.8 3.5E+02 0.0077 33.9 13.5 57 582-638 279-338 (880)
277 PF10458 Val_tRNA-synt_C: Valy 38.7 1.1E+02 0.0025 25.6 6.3 65 626-693 2-66 (66)
278 KOG0612 Rho-associated, coiled 38.6 2.2E+02 0.0047 36.9 11.0 30 623-652 751-780 (1317)
279 PF05557 MAD: Mitotic checkpoi 38.5 33 0.00072 42.1 4.3 79 620-698 453-535 (722)
280 TIGR03185 DNA_S_dndD DNA sulfu 38.5 3.6E+02 0.0078 32.8 13.0 99 582-699 421-521 (650)
281 COG4026 Uncharacterized protei 38.0 4.5E+02 0.0098 27.8 11.5 29 669-697 173-201 (290)
282 cd00890 Prefoldin Prefoldin is 37.9 2.8E+02 0.006 25.7 9.6 40 612-651 4-43 (129)
283 TIGR01843 type_I_hlyD type I s 37.7 4.2E+02 0.0092 29.5 12.8 28 670-697 243-270 (423)
284 smart00787 Spc7 Spc7 kinetocho 37.6 6.1E+02 0.013 28.1 14.8 28 618-645 169-196 (312)
285 TIGR01005 eps_transp_fam exopo 37.6 2.4E+02 0.0051 34.8 11.5 20 581-600 287-306 (754)
286 PF12718 Tropomyosin_1: Tropom 37.5 1.4E+02 0.0029 29.3 7.6 67 618-698 39-105 (143)
287 PRK12704 phosphodiesterase; Pr 37.3 5.1E+02 0.011 30.8 13.6 34 674-707 118-151 (520)
288 PF12325 TMF_TATA_bd: TATA ele 37.3 3.7E+02 0.0081 25.6 10.9 46 584-637 39-84 (120)
289 KOG4270 GTPase-activator prote 37.2 27 0.00059 41.5 3.1 154 157-324 31-195 (577)
290 TIGR01837 PHA_granule_1 poly(h 37.2 1.4E+02 0.003 28.3 7.3 20 674-693 97-116 (118)
291 TIGR02169 SMC_prok_A chromosom 37.1 5.5E+02 0.012 32.9 15.1 19 201-219 109-127 (1164)
292 PF07246 Phlebovirus_NSM: Phle 36.8 3.9E+02 0.0084 28.9 11.2 36 669-704 205-240 (264)
293 PRK15178 Vi polysaccharide exp 36.7 5.3E+02 0.012 30.0 13.2 100 581-690 222-338 (434)
294 TIGR03319 YmdA_YtgF conserved 36.6 5.9E+02 0.013 30.2 14.0 21 617-637 58-78 (514)
295 PF05667 DUF812: Protein of un 36.6 3.8E+02 0.0082 32.4 12.5 24 667-690 441-464 (594)
296 PF09744 Jnk-SapK_ap_N: JNK_SA 36.5 1.5E+02 0.0033 29.5 7.8 66 625-696 54-119 (158)
297 PRK11281 hypothetical protein; 36.5 3.8E+02 0.0083 34.9 13.2 41 599-639 212-252 (1113)
298 KOG3433 Protein involved in me 36.4 4.9E+02 0.011 26.7 11.3 65 583-650 75-142 (203)
299 PF04111 APG6: Autophagy prote 36.3 4.2E+02 0.0091 29.3 12.1 32 673-704 106-137 (314)
300 PF06705 SF-assemblin: SF-asse 36.3 4.8E+02 0.01 27.6 12.2 95 603-703 45-144 (247)
301 PF04714 BCL_N: BCL7, N-termin 36.3 16 0.00035 29.3 0.8 22 34-55 27-48 (52)
302 PF07888 CALCOCO1: Calcium bin 36.1 7.8E+02 0.017 29.5 14.6 40 581-620 142-181 (546)
303 PF11180 DUF2968: Protein of u 36.1 3.8E+02 0.0083 27.6 10.6 76 578-653 101-186 (192)
304 KOG4643 Uncharacterized coiled 36.0 8.3E+02 0.018 31.4 15.1 115 577-691 59-195 (1195)
305 PRK09039 hypothetical protein; 36.0 2.2E+02 0.0047 31.9 9.8 33 581-613 52-84 (343)
306 PF05700 BCAS2: Breast carcino 35.9 5.3E+02 0.011 26.9 15.8 36 664-699 180-215 (221)
307 PF15397 DUF4618: Domain of un 35.7 3.1E+02 0.0068 29.6 10.5 28 673-700 200-227 (258)
308 KOG4673 Transcription factor T 35.3 4.5E+02 0.0098 32.1 12.3 112 554-701 654-767 (961)
309 KOG1029 Endocytic adaptor prot 35.3 6.3E+02 0.014 31.4 13.6 35 667-701 438-472 (1118)
310 PF07820 TraC: TraC-like prote 35.2 1.2E+02 0.0027 27.5 6.2 30 623-652 4-39 (92)
311 PF08458 PH_2: Plant pleckstri 34.8 2.6E+02 0.0057 26.3 8.5 38 87-127 69-106 (110)
312 TIGR01005 eps_transp_fam exopo 34.7 8.5E+02 0.018 30.0 15.7 40 664-703 286-339 (754)
313 PRK03918 chromosome segregatio 34.7 5.3E+02 0.012 32.2 14.1 25 624-648 348-372 (880)
314 PLN02320 seryl-tRNA synthetase 34.3 2.2E+02 0.0047 33.7 9.8 36 666-701 130-165 (502)
315 TIGR00606 rad50 rad50. This fa 34.1 6.3E+02 0.014 33.6 15.1 39 663-701 967-1005(1311)
316 PRK14127 cell division protein 34.1 66 0.0014 30.1 4.5 30 669-698 40-69 (109)
317 TIGR02168 SMC_prok_B chromosom 33.8 6.6E+02 0.014 32.1 15.1 10 201-210 111-120 (1179)
318 COG1196 Smc Chromosome segrega 33.8 6.5E+02 0.014 33.0 15.0 63 583-645 296-368 (1163)
319 PF06005 DUF904: Protein of un 33.7 1.4E+02 0.003 25.9 6.1 28 666-693 11-38 (72)
320 TIGR03752 conj_TIGR03752 integ 33.5 2.3E+02 0.005 33.1 9.6 30 669-698 112-141 (472)
321 PRK04863 mukB cell division pr 33.3 5.1E+02 0.011 34.9 13.9 27 675-701 451-477 (1486)
322 KOG1118 Lysophosphatidic acid 33.1 7.2E+02 0.016 27.6 12.9 113 570-699 96-221 (366)
323 COG3750 Uncharacterized protei 32.8 88 0.0019 27.5 4.7 40 583-622 22-68 (85)
324 KOG0837 Transcriptional activa 32.6 2.8E+02 0.0061 29.9 9.3 56 614-700 213-268 (279)
325 PF10146 zf-C4H2: Zinc finger- 32.3 5.1E+02 0.011 27.4 11.3 68 623-700 41-109 (230)
326 TIGR03007 pepcterm_ChnLen poly 32.3 4E+02 0.0086 31.0 11.7 43 604-646 140-187 (498)
327 PF05266 DUF724: Protein of un 32.2 5.7E+02 0.012 26.2 11.9 28 669-696 155-182 (190)
328 PF08172 CASP_C: CASP C termin 32.2 2.5E+02 0.0055 30.0 9.2 26 625-650 3-28 (248)
329 KOG4095 Uncharacterized conser 32.2 17 0.00037 35.5 0.4 26 34-59 28-53 (165)
330 TIGR01069 mutS2 MutS2 family p 31.5 5.2E+02 0.011 32.3 13.0 57 579-639 512-568 (771)
331 TIGR00606 rad50 rad50. This fa 31.1 6E+02 0.013 33.7 14.2 121 570-697 780-919 (1311)
332 PF05483 SCP-1: Synaptonemal c 31.1 4.8E+02 0.011 31.9 11.8 77 626-702 673-768 (786)
333 PRK11239 hypothetical protein; 30.9 75 0.0016 33.2 4.7 28 669-696 186-213 (215)
334 PRK11546 zraP zinc resistance 30.7 1.7E+02 0.0037 28.8 6.9 57 588-649 60-118 (143)
335 KOG2070 Guanine nucleotide exc 30.7 69 0.0015 37.2 4.8 59 598-656 597-658 (661)
336 cd07596 BAR_SNX The Bin/Amphip 30.7 3.7E+02 0.0081 26.9 10.0 39 663-701 142-180 (218)
337 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.6 3.6E+02 0.0078 25.7 9.2 67 583-649 60-126 (132)
338 PF12761 End3: Actin cytoskele 30.5 2E+02 0.0043 29.8 7.6 27 674-700 161-187 (195)
339 PF05565 Sipho_Gp157: Siphovir 30.5 3E+02 0.0064 27.4 8.8 66 578-643 22-90 (162)
340 COG1842 PspA Phage shock prote 30.4 6.7E+02 0.015 26.5 13.3 16 583-598 18-33 (225)
341 PF06698 DUF1192: Protein of u 30.4 1.4E+02 0.003 25.0 5.3 33 618-650 25-57 (59)
342 TIGR00414 serS seryl-tRNA synt 30.3 3.3E+02 0.0072 31.3 10.4 34 668-701 71-104 (418)
343 PF11932 DUF3450: Protein of u 30.3 2.1E+02 0.0046 30.3 8.3 94 584-681 44-139 (251)
344 PRK05431 seryl-tRNA synthetase 30.2 4.2E+02 0.009 30.6 11.2 35 667-701 67-101 (425)
345 KOG1899 LAR transmembrane tyro 30.2 4E+02 0.0087 32.2 10.7 20 667-686 175-194 (861)
346 KOG4403 Cell surface glycoprot 30.2 7E+02 0.015 28.9 12.3 109 580-700 250-367 (575)
347 PF10481 CENP-F_N: Cenp-F N-te 30.1 2.1E+02 0.0045 31.1 7.9 88 610-698 25-113 (307)
348 KOG3156 Uncharacterized membra 30.1 1E+02 0.0023 32.1 5.6 61 578-639 123-192 (220)
349 KOG0933 Structural maintenance 30.0 5.8E+02 0.013 32.6 12.5 33 667-699 844-876 (1174)
350 PF03962 Mnd1: Mnd1 family; I 29.9 1.6E+02 0.0035 30.1 7.0 30 665-694 134-163 (188)
351 cd00632 Prefoldin_beta Prefold 29.8 4E+02 0.0086 24.3 9.0 79 623-701 15-98 (105)
352 PF07957 DUF3294: Protein of u 29.7 1.2E+02 0.0026 31.8 5.9 34 625-658 74-109 (216)
353 PF08687 ASD2: Apx/Shroom doma 29.6 5.4E+02 0.012 27.9 11.1 107 584-693 95-261 (264)
354 PF14257 DUF4349: Domain of un 29.2 2.1E+02 0.0045 30.4 8.1 37 672-708 161-197 (262)
355 PRK10929 putative mechanosensi 29.2 2.7E+02 0.006 36.1 10.2 23 665-687 172-194 (1109)
356 PF04880 NUDE_C: NUDE protein, 28.8 54 0.0012 33.0 3.2 23 592-614 3-25 (166)
357 PF12709 Kinetocho_Slk19: Cent 28.7 1.3E+02 0.0028 27.1 5.2 34 610-643 45-78 (87)
358 PF07439 DUF1515: Protein of u 28.5 3.6E+02 0.0078 25.3 8.1 63 619-694 6-68 (112)
359 PF13514 AAA_27: AAA domain 28.1 8.3E+02 0.018 31.8 14.5 131 571-702 231-382 (1111)
360 KOG4140 Nuclear protein Ataxin 28.0 3.2E+02 0.0069 32.0 9.3 75 538-652 244-319 (659)
361 KOG2072 Translation initiation 27.9 7.9E+02 0.017 30.8 12.9 61 623-702 672-732 (988)
362 PF04880 NUDE_C: NUDE protein, 27.9 93 0.002 31.3 4.7 27 670-696 21-47 (166)
363 KOG3156 Uncharacterized membra 27.7 4.1E+02 0.0088 27.9 9.3 70 624-701 126-202 (220)
364 PF01920 Prefoldin_2: Prefoldi 27.7 4.3E+02 0.0092 23.5 8.8 86 618-703 9-99 (106)
365 KOG1760 Molecular chaperone Pr 27.5 3.8E+02 0.0083 25.8 8.3 79 618-699 27-121 (131)
366 PF08647 BRE1: BRE1 E3 ubiquit 27.3 4.5E+02 0.0098 23.8 8.7 68 582-649 3-80 (96)
367 PRK13729 conjugal transfer pil 27.3 1.4E+02 0.003 34.8 6.6 19 620-638 75-93 (475)
368 PF03148 Tektin: Tektin family 26.8 5.8E+02 0.013 29.0 11.5 87 614-700 50-150 (384)
369 KOG0971 Microtubule-associated 26.5 1.4E+02 0.003 37.4 6.5 122 581-704 986-1116(1243)
370 TIGR03752 conj_TIGR03752 integ 26.5 1.9E+02 0.0042 33.7 7.5 62 583-648 64-136 (472)
371 PF10073 DUF2312: Uncharacteri 26.0 2.1E+02 0.0045 25.1 5.8 37 583-619 12-55 (74)
372 TIGR02338 gimC_beta prefoldin, 25.7 5.3E+02 0.011 23.7 9.2 40 662-701 63-102 (110)
373 COG0419 SbcC ATPase involved i 25.7 5.1E+02 0.011 32.9 11.8 50 664-713 408-465 (908)
374 KOG0993 Rab5 GTPase effector R 25.7 5.5E+02 0.012 29.5 10.4 53 626-695 439-491 (542)
375 KOG0642 Cell-cycle nuclear pro 25.6 94 0.002 36.6 4.8 101 581-692 33-133 (577)
376 PRK10361 DNA recombination pro 25.4 1.2E+03 0.025 27.6 15.2 43 593-635 71-113 (475)
377 PF13514 AAA_27: AAA domain 25.3 9.1E+02 0.02 31.4 14.2 38 660-697 236-273 (1111)
378 TIGR02473 flagell_FliJ flagell 25.3 5.7E+02 0.012 23.9 10.0 72 630-701 29-103 (141)
379 PRK12704 phosphodiesterase; Pr 25.2 4.5E+02 0.0097 31.3 10.5 21 617-637 64-84 (520)
380 PF14915 CCDC144C: CCDC144C pr 25.2 9.1E+02 0.02 26.7 11.8 78 623-700 86-171 (305)
381 KOG1656 Protein involved in gl 25.1 8.1E+02 0.017 25.6 11.8 46 559-607 7-53 (221)
382 KOG2070 Guanine nucleotide exc 25.1 1.8E+02 0.0039 34.0 6.7 80 37-122 325-404 (661)
383 PF07321 YscO: Type III secret 25.0 6.9E+02 0.015 24.8 13.5 72 609-701 31-102 (152)
384 KOG0250 DNA repair protein RAD 24.9 6.8E+02 0.015 32.3 12.1 58 582-642 661-724 (1074)
385 PF14389 Lzipper-MIP1: Leucine 24.9 1.2E+02 0.0026 27.1 4.5 55 583-637 9-77 (88)
386 PF06698 DUF1192: Protein of u 24.9 1.1E+02 0.0024 25.6 3.8 26 668-693 23-48 (59)
387 smart00338 BRLZ basic region l 24.5 2.5E+02 0.0054 23.2 6.1 6 628-633 26-31 (65)
388 TIGR03755 conj_TIGR03755 integ 24.4 1.4E+02 0.003 34.3 5.8 60 629-688 308-372 (418)
389 PF14817 HAUS5: HAUS augmin-li 24.2 2E+02 0.0043 35.0 7.3 41 599-639 52-97 (632)
390 PRK11020 hypothetical protein; 24.1 3E+02 0.0064 26.1 6.8 62 625-701 2-63 (118)
391 PRK11239 hypothetical protein; 23.8 1.1E+02 0.0023 32.1 4.3 29 673-701 183-211 (215)
392 PF02841 GBP_C: Guanylate-bind 23.5 5.6E+02 0.012 27.9 10.2 20 232-251 8-27 (297)
393 PF10828 DUF2570: Protein of u 23.0 3.6E+02 0.0078 25.0 7.4 32 584-615 27-58 (110)
394 KOG0977 Nuclear envelope prote 22.9 7.1E+02 0.015 29.8 11.3 39 662-700 158-196 (546)
395 PF10805 DUF2730: Protein of u 22.8 6.1E+02 0.013 23.4 9.1 73 607-697 22-96 (106)
396 PF15277 Sec3-PIP2_bind: Exocy 22.6 2.6E+02 0.0057 25.1 6.2 33 89-125 57-89 (91)
397 PRK11281 hypothetical protein; 22.4 9.3E+02 0.02 31.5 13.1 26 664-689 190-215 (1113)
398 PF11285 DUF3086: Protein of u 22.3 1.1E+02 0.0025 32.7 4.3 19 617-635 7-25 (283)
399 PF13166 AAA_13: AAA domain 22.1 1.4E+03 0.03 27.8 14.4 68 622-693 323-390 (712)
400 KOG4348 Adaptor protein CMS/SE 22.1 1.7E+02 0.0038 33.6 5.9 22 628-649 594-615 (627)
401 KOG4593 Mitotic checkpoint pro 22.0 1.5E+03 0.033 27.9 13.7 24 675-698 181-204 (716)
402 PRK13848 conjugal transfer pro 21.9 2.7E+02 0.0059 25.4 5.9 29 624-652 6-40 (98)
403 PRK13694 hypothetical protein; 21.8 1.4E+02 0.0031 26.6 4.1 37 583-619 20-63 (83)
404 PF06705 SF-assemblin: SF-asse 21.6 9.6E+02 0.021 25.3 13.5 81 608-701 108-189 (247)
405 PF05529 Bap31: B-cell recepto 21.6 6E+02 0.013 25.6 9.4 28 670-697 158-185 (192)
406 PTZ00186 heat shock 70 kDa pre 21.4 4.3E+02 0.0094 32.3 9.6 38 679-716 606-644 (657)
407 KOG0250 DNA repair protein RAD 21.4 9.8E+02 0.021 30.9 12.5 50 205-264 158-209 (1074)
408 PF14282 FlxA: FlxA-like prote 21.3 5.7E+02 0.012 23.6 8.3 51 581-638 18-68 (106)
409 PF06005 DUF904: Protein of un 21.2 4.9E+02 0.011 22.5 7.2 55 593-647 8-66 (72)
410 PF11559 ADIP: Afadin- and alp 21.1 7.5E+02 0.016 23.8 11.7 23 589-611 38-60 (151)
411 PF09727 CortBP2: Cortactin-bi 21.0 4.1E+02 0.0089 27.5 7.9 47 626-692 139-185 (192)
412 PF04156 IncA: IncA protein; 20.8 8.4E+02 0.018 24.3 13.4 23 619-641 100-122 (191)
413 PF12017 Tnp_P_element: Transp 20.8 2.6E+02 0.0055 29.8 6.6 32 619-650 23-54 (236)
414 PRK12705 hypothetical protein; 20.4 8.6E+02 0.019 28.9 11.4 24 617-640 59-82 (508)
415 PF10234 Cluap1: Clusterin-ass 20.4 3.9E+02 0.0085 29.0 8.0 78 624-701 127-211 (267)
416 TIGR01000 bacteriocin_acc bact 20.2 1.2E+03 0.027 26.8 12.7 26 671-696 289-314 (457)
417 PF04931 DNA_pol_phi: DNA poly 20.1 2.4E+02 0.0051 35.2 7.2 9 580-588 730-738 (784)
418 KOG3119 Basic region leucine z 20.1 9.2E+02 0.02 26.0 10.9 37 603-639 201-247 (269)
419 KOG1832 HIV-1 Vpr-binding prot 20.1 1.3E+02 0.0028 37.6 4.6 13 34-46 1078-1090(1516)
420 PF05529 Bap31: B-cell recepto 20.1 7.9E+02 0.017 24.7 9.9 31 664-694 159-189 (192)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-45 Score=417.68 Aligned_cols=618 Identities=31% Similarity=0.345 Sum_probs=499.5
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHhcCCcc-hhhccCCCcccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 004320 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (761)
Q Consensus 97 ~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~-a~~~g~~~if~~~~~~~~e~s-~~~~k~k~~~~~~vFGvpL~~ll 174 (761)
..+++.|...+++..++.+|-.+++.+...||+. +.+++|+|+|+.+..++..+. .-.++...++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 3457889999999999999999999999999998 889999999999998876553 55567778889999999998889
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCCcCC---ccccCC-CHHHHHHHHHHHh-cCCccC--CCCCCcc--chHHhHH--Hhhh
Q 004320 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR 243 (761)
Q Consensus 175 ~~~~~VP~il~~~i~~L~~~Gl~~EG---IFR~sg-~~~~v~~L~~~ld-~g~~~~--~~~~D~h--~vAslLK--~fLR 243 (761)
+..++-|.+..+.+.+|..+|+..|| |-|.++ +...|+.-...|+ .|...+ ....+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 98899999999999999999999999 999999 7777877777775 565333 3335898 6888888 8899
Q ss_pred cCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHHhh--CChhHHH----HHHHHHHHHHHHHhccccCCCCcc-ch
Q 004320 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~--~~~~~~e~ri~~lk~lIl~~--LP~~N~~----lL~~Ll~fL~~Va~~s~~NkMta~-NL 314 (761)
.++..+.|..+|..+..+ +...-.+.|+..++..|++. .|.+|+. ++.+|+.++..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999988877 66555678999999999888 8998888 888999999999999999999999 99
Q ss_pred hhhccc-cccC-CCCCCCCccccc-cCCCCCchHH----HHHHHHHhh-HHHHHHHHHHHhcccccCCccccccCCCCCC
Q 004320 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (761)
Q Consensus 315 AivfaP-~Llr-~~~~~~~~le~~-~~~~g~~~aq----l~~a~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~s~s~~s 386 (761)
+.|.+| .|++ |-..+.|.++.+ |+..++..++ ++.|...++ .++.+|-.+++.|..||.+.....+..+..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 556788888886 9999999999 777777777 5999999999999999999987776665554
Q ss_pred CCCCCC--CCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 004320 387 HVDNSG--SEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (761)
Q Consensus 387 s~~~s~--~e~ssd~~~~~~~d~~~~s~e~e~~~~~d~~~e~~~s~~~s~~~~~~~~d~~~~~~~~~~~s~~~~~~~~~~ 464 (761)
.+..+. +.++.+.+.+...-..-.+-.+.++-..+.|+.........+.+..+.+|++.|.+.+..+++.++++.-..
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 444222 133333222222222222222222222333333334566666777888899999999999999998876555
Q ss_pred ccccCCCCCCCCCCCCCCchhHHhhhccccCCCCccccccccccCCCCCCcCccccccccCCCCCCCC-CCCCCCccccc
Q 004320 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (761)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (761)
+...+.++..+...|..... +.+...+.....+.+++...|+....|+.|.+ +++....+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~d----------------~g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSMD----------------LGGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCcccccccccc----------------ccCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 55555665544332222211 11122344555666777788777777877776 45566777777
Q ss_pred -CCCCCCCCCCCCcccccccCcccCCCCcccCCCCchHHHHHHH-----hhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH
Q 004320 544 -VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (761)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~ 617 (761)
.+-+..+...++|...|||+.+.|++.+|++|.+++|++.||| ++.+|.|+|+||+||+|+|+.|||++++|++
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 4444566677889999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 618 ~~~~~r~~Le-~~V~~Lq~~L~~e~~~~~~Le~~--l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
+.+++|.+|| +|+.+||.++|.|+..|.+...+ +....|+. ...-.|.++++-|.+++..|.+ ++|.+++.+...
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD-a~lktk~~n~pa 907 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD-AKLKTKTKNTPA 907 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc-ccccccccCCcc
Confidence 9999999999 99999999999999999999987 55554433 3466899999999999999999 999999999999
Q ss_pred HHH--HHHhhhcCCcccccccccccccccccccccccccC
Q 004320 695 QLN--QQRQHHYGSLSDACDRYQNVQNHNSQQSFSSNIFN 732 (761)
Q Consensus 695 ~l~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (761)
+.+ .+++.+.....++.....+++.|..+-+..++|+.
T Consensus 908 ~~stt~~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg 947 (1100)
T KOG4271|consen 908 RRSTTWESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTG 947 (1100)
T ss_pred cccchhhhhccCCcccccccCCcccchHHHHHHHHHHhcc
Confidence 999 99999999999999999999999988999988888
No 2
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.2e-40 Score=332.82 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=175.6
Q ss_pred ccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhHHHhhhc
Q 004320 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (761)
Q Consensus 165 vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslLK~fLRe 244 (761)
+||+||..+++ ++.||.+|.+|+.||+++|+.+|||||++|+..++++++..+|.|........|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999999 67899999999999999999999999999999999999999999976556789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccC
Q 004320 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 245 LPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr 324 (761)
||+||+|.+.|+.|+.+....+.+.++..++.++ .+||+.|+.+|++|+.||++|+.+++.|+||++|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888899999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
++..+ ...+.....+..++++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 97321 01123446788999999999999999863
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=6.2e-40 Score=332.10 Aligned_cols=189 Identities=20% Similarity=0.377 Sum_probs=168.2
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-C-ccCC--CCCCccchHHhHHH
Q 004320 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (761)
Q Consensus 166 FGvpL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~-~~~~--~~~D~h~vAslLK~ 240 (761)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+|+++++.||++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999974 3 3332 23589999999999
Q ss_pred hhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccc
Q 004320 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (761)
Q Consensus 241 fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP 320 (761)
|||+||+||||.++|+.|+++.+..+..+++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999999888889999999966 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
+|+|++... . ...+....+.+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~--------------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS--------------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc--------------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999997311 0 1223344667899999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-39 Score=331.97 Aligned_cols=197 Identities=22% Similarity=0.347 Sum_probs=174.4
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC---CCCCCccchHHhH
Q 004320 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (761)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~D~h~vAslL 238 (761)
+++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.+|.|.... ....|||+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 56999999999976 4579999999999999999999999999999999999999999996432 3346999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.+| .+||+.|+.+|++|+.||++|++|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888889999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCc
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~ 375 (761)
||+|+|++..+. ..+.+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~---------------~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS---------------LAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh---------------hhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999974211 011112334568899999999999999986
No 5
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-38 Score=344.75 Aligned_cols=304 Identities=23% Similarity=0.340 Sum_probs=242.3
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC--CCCceeeeeeCcEEcCCCcceeeccCCcceE
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p--~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~F 91 (761)
.++...+++||||.+.|....++|.|+||+..+.+-.+-...-+.++ .+|...++.+..|.-....+ -+|+|||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCF 335 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCF 335 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceee
Confidence 34566799999999999888899999999999864444333322222 33444456666666555444 4789999
Q ss_pred EEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcchhhccCCCcccCCCCccccCccccccCCCCCCCcccccchH
Q 004320 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPIL 171 (761)
Q Consensus 92 vit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a~~~g~~~if~~~~~~~~e~s~~~~k~k~~~~~~vFGvpL~ 171 (761)
.+....+.| +.+|||-+++++..||.|+..+ .+++.++..-...+ -..|.
T Consensus 336 Dve~~erpg-viTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~----------------~~qLd 385 (812)
T KOG1451|consen 336 DVEVEERPG-VITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYK----------------QTQLD 385 (812)
T ss_pred eeeecccCC-eeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhh----------------hhhhh
Confidence 998866655 7999999999999999998644 23333321110000 00111
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC----Cc--cCCCCCCccchHHhHHHhhhcC
Q 004320 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----KT--EFSADEDAHVIGDCVKHVLREL 245 (761)
Q Consensus 172 ~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g----~~--~~~~~~D~h~vAslLK~fLReL 245 (761)
+ --=.||.+||+.|+..|++++|+||..|...+|++|...+-.. +. +...++|.-+|++.||.|||.|
T Consensus 386 ~------iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnL 459 (812)
T KOG1451|consen 386 D------IGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNL 459 (812)
T ss_pred h------hhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhC
Confidence 1 1135899999999999999999999999999999998865332 22 2235689999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCC
Q 004320 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (761)
Q Consensus 246 PePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~ 325 (761)
|+||+++.+...|+.++...+.+.|+.+|+.++ .+||.-||..|..|++||..|+.|+..|.||..||++||||+|+|+
T Consensus 460 pEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRp 538 (812)
T KOG1451|consen 460 PEPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRP 538 (812)
T ss_pred CchhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCc
Confidence 999999999999999999999999999999977 5999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 326 ~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
. ..+++|+|.++.++-||++||+||+.||...+
T Consensus 539 Q------------------EETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 539 Q------------------EETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred h------------------HHHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 7 23578899999999999999999999998765
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=3e-39 Score=328.27 Aligned_cols=191 Identities=23% Similarity=0.430 Sum_probs=168.3
Q ss_pred cccccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHh
Q 004320 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDC 237 (761)
Q Consensus 164 ~vFGvpL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAsl 237 (761)
.|||+||++++... ..||.+|.+|++||+++|+.+|||||++|+...++++++.||.|. ..+....|||+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 349999999999999999999999999999999999999999996 344567899999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchh
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~--~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLA 315 (761)
||.|||+||+||+|.++|+.|+.+... .+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788899866 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
+||||+|||++. +++ .+.+..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~------~~~-----------~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKV------EDP-----------ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCC------CCH-----------HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 999999999873 211 2234556678899999999999998
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-39 Score=331.39 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=175.3
Q ss_pred ccccchHHHhhhc------CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC---ccCCCCCCccchH
Q 004320 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (761)
Q Consensus 165 vFGvpL~~ll~~~------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~---~~~~~~~D~h~vA 235 (761)
|||+||+.++.+. ..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999763 469999999999999999999999999999999999999999863 2234567999999
Q ss_pred HhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchh
Q 004320 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (761)
Q Consensus 236 slLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLA 315 (761)
++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999866 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
+||||+||++...+... .......+..+..+..+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSKD-----------NESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCCc-----------chhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 99999999987432211 122334455667789999999999999998765
No 8
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=6.1e-39 Score=322.69 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=167.1
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhc
Q 004320 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (761)
Q Consensus 166 FGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLRe 244 (761)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999984 3334578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccC
Q 004320 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 245 LPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr 324 (761)
||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888888999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
++... + -+..+....+...+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 123455677889999999973
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.9e-39 Score=330.68 Aligned_cols=210 Identities=21% Similarity=0.350 Sum_probs=174.8
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHH
Q 004320 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (761)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~ 240 (761)
++|||+||..++++ +..||.+|.+|+.||+.+|+++|||||++|+..++++|++.+|.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988876 4679999999999999999999999999999999999999999863 444556899999999999
Q ss_pred hhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccc
Q 004320 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (761)
Q Consensus 241 fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP 320 (761)
|||+||+||||.++|+.|+.+.+..+.++++.+++.++ .+||++|+.+|++|+.||++|+.|++.||||+.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988888889999999976 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccc-----ccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 321 LLLRPLLAGECELED-----DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 321 ~Llr~~~~~~~~le~-----~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
+||+........+-. .....|... ...+.....+..+|.+||+||+.||.-+.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp~ 218 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVPK 218 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999986432110000 000011111 11233445577899999999999997643
No 10
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=4.8e-39 Score=322.45 Aligned_cols=176 Identities=21% Similarity=0.355 Sum_probs=165.0
Q ss_pred cccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhHHH
Q 004320 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (761)
Q Consensus 166 FGvpL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslLK~ 240 (761)
||+||..++++. ..||.+|.+|++||+++|+++|||||++|+...++++++.|++|......++|||+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999999863 359999999999999999999999999999999999999999997666667899999999999
Q ss_pred hhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccc
Q 004320 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (761)
Q Consensus 241 fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP 320 (761)
|||+||+||||.++|+.|+++....+..+++..++.++ .+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888899999999966 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCC
Q 004320 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (761)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (761)
+|+.+ ..++..||+||+.||++
T Consensus 160 ~l~~~--------------------------------~~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQIS--------------------------------NRLLYALLTHCQELFGN 181 (182)
T ss_pred cccCc--------------------------------HHHHHHHHHHHHHHcCC
Confidence 99874 37899999999999986
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.6e-39 Score=323.53 Aligned_cols=190 Identities=22% Similarity=0.304 Sum_probs=166.2
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCC----CCCCccchHHhH
Q 004320 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (761)
Q Consensus 164 ~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~----~~~D~h~vAslL 238 (761)
++||+||..++++ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.||+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999963222 346999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||||+++|+.|+++....+.++++..++.+| .+||+.|+.+|++|+.||++|+.|++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
||+|||++..... .+ +-.++.+....++.||++||+|
T Consensus 159 ~P~L~~~~~~~~~------~~------~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------CF------SGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------cc------hHHHHHHHHhhhhhheehhhcC
Confidence 9999999742111 11 1123455667788999999986
No 12
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-38 Score=326.55 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=167.9
Q ss_pred cccchHHHhhhcC------------CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc--CCCCCCc
Q 004320 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (761)
Q Consensus 166 FGvpL~~ll~~~~------------~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~D~ 231 (761)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++++++.||.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998743 3999999999999999999999999999999999999999998532 3446799
Q ss_pred cchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----c
Q 004320 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (761)
Q Consensus 232 h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~-----~ 306 (761)
|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.++ .+||+.|+.+|++|+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888888888888755 69999999999999999999998775 5
Q ss_pred CCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 307 NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
||||+.|||+||||+|||++..... .+........+|++||+||+.||....
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~------------------~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPN------------------TGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcc------------------hHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 9999999999999999998732100 012234567899999999999998754
No 13
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=2.3e-38 Score=319.05 Aligned_cols=184 Identities=20% Similarity=0.374 Sum_probs=165.2
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc---CCCCCCccchHHhHH
Q 004320 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVK 239 (761)
Q Consensus 164 ~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~D~h~vAslLK 239 (761)
++||+||+.++++ +..||.+|.+|++||+++|+.+|||||++|+..+++++++.||+|... .....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999986 457999999999999999999999999999999999999999998643 234689999999999
Q ss_pred HhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcc
Q 004320 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (761)
Q Consensus 240 ~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfa 319 (761)
.|||+||+||||.++|+.|+++.+..+..+++..++.+| .+||+.|+.+|++|+.||++|++|++.||||++|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888889999999966 5999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 320 P~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
|+|+|.+... +.+....+++++++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999987311 1133456788999999875
No 14
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-38 Score=317.64 Aligned_cols=183 Identities=27% Similarity=0.420 Sum_probs=163.2
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cC--CCCCCccchHHhHHHh
Q 004320 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF--SADEDAHVIGDCVKHV 241 (761)
Q Consensus 166 FGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~--~~~~D~h~vAslLK~f 241 (761)
||+||..++++ +..||.+|.+|+.||+++|+++|||||++|+...+++++..+|.|.. ++ ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999986 45699999999999999999999999999999999999999999853 22 3457999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcccc
Q 004320 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (761)
Q Consensus 242 LReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~ 321 (761)
||+||+||||+++|+.|+++.+..+..+++..++.++ .+||++|+.+|+||+.||++|++|++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999988899999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 322 Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
|||++... . ..+....+++.+|++||+|
T Consensus 160 ll~~~~~~-------------~-----~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET-------------G-----NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc-------------h-----HHHHHhHHHHHHHHHHhhC
Confidence 99987311 0 1112335688999999985
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.7e-38 Score=317.27 Aligned_cols=190 Identities=21% Similarity=0.354 Sum_probs=168.7
Q ss_pred ccccchHHHhhhc--CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC----CCCCCccchHHhH
Q 004320 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (761)
Q Consensus 165 vFGvpL~~ll~~~--~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~----~~~~D~h~vAslL 238 (761)
.||+||+..+... ..||.+|.+|+.+|+++|+++|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999877653 579999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||||.+.|+.|+.+....+..+++..++.++ ++||+.|+.+|++|+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
||+|+|++..+ . ..........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~--------------~---~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN--------------M---ETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC--------------H---HHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 0 1122344567899999999999998
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-38 Score=318.30 Aligned_cols=190 Identities=26% Similarity=0.445 Sum_probs=168.6
Q ss_pred CCcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchHHh
Q 004320 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (761)
Q Consensus 162 ~~~vFGvpL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vAsl 237 (761)
+..+||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|.. .+....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 4679999999999764 5799999999999999999999999999999999999999999963 33333499999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhh
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAiv 317 (761)
||.|||+||+||+|.+.|+.|+.+.... ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 677889999966 58999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
|||+|||++... . .+...+.++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~~-~------------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS-M------------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc-c------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987321 0 12345668899999999999998
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.2e-38 Score=318.40 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=163.3
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchHHhHHHhhh
Q 004320 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (761)
Q Consensus 166 FGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vAslLK~fLR 243 (761)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999986 56799999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCc
Q 004320 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~~~~~------------~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta 311 (761)
+||+||||+++|+.|+++.+.. ..++++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2457899999966 69999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
.|||+||||+|||++..... .++.+....+...+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~---------------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDV---------------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCch---------------HHHHHhccchHHHHHHHHhhC
Confidence 99999999999999843211 133345567788999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=6.6e-38 Score=315.18 Aligned_cols=184 Identities=21% Similarity=0.327 Sum_probs=164.6
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhc
Q 004320 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (761)
Q Consensus 166 FGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLRe 244 (761)
||+||+.++..++.||.+|.+|++||+.+|+.+|||||++|+..+++++++.||.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877899999999999999999999999999999999999999999874 3345678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccC
Q 004320 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 245 LPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr 324 (761)
||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888888999999866 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Q 004320 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (761)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIe 366 (761)
++... + + ++.++...++..+|++||.
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 87321 1 1 2334556677888998874
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-37 Score=317.12 Aligned_cols=195 Identities=24% Similarity=0.328 Sum_probs=168.1
Q ss_pred ccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhHHH
Q 004320 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (761)
Q Consensus 165 vFGvpL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslLK~ 240 (761)
|||+||..++.. .+.||.+|.+|+.||++ |+++|||||++|+..+++++++.||+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999998753 46799999999999986 6999999999999999999999999996443 35789999999999
Q ss_pred hhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccc
Q 004320 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (761)
Q Consensus 241 fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP 320 (761)
|||+||+||||.++|+.|+.+....+.++++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT-CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988887788888888754 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
+|||+..... .|... .......++.+|++||+||+.||.-++
T Consensus 158 ~L~~~~~~~~-------~~s~~-------~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-------KMSSS-------TEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-------ccchh-------HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999863211 11100 112345578999999999999997654
No 20
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-37 Score=321.14 Aligned_cols=188 Identities=20% Similarity=0.277 Sum_probs=161.7
Q ss_pred ccccchHHHhhhc----------------CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC----cc
Q 004320 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (761)
Q Consensus 165 vFGvpL~~ll~~~----------------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~----~~ 224 (761)
|||+||+..++.. +.||.+|.+|+.||+++|+.+|||||++|+..+++++++.||.|. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999888642 358999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhhCChhHH
Q 004320 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (761)
Q Consensus 225 ~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~-----------------~~~e~ri~~lk~lIl~~LP~~N~ 287 (761)
....+|+|+||++||.|||+||+||||.++|+.|+.+... .+..+++..++.+| .+||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 2356899999999999999999999999999999887642 35678899999866 69999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 288 ~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
.+|+||+.||++|++|++.||||+.|||+||||+||+++... |. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---~~----------------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---MD----------------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---cC----------------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987321 10 11234567899999999
Q ss_pred ccccc
Q 004320 368 YENIF 372 (761)
Q Consensus 368 ~~~IF 372 (761)
++.+.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 21
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-37 Score=315.45 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=163.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhcCCCCCCChhhH
Q 004320 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (761)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLReLPePLlp~~ly 255 (761)
.+.||.+|.+|++||+++|+++|||||++|+..+++++++.||.|. ..+....|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4579999999999999999999999999999999999999999996 345556899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----------cCCCCccchhhhccccccC
Q 004320 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 256 ~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~-----------~NkMta~NLAivfaP~Llr 324 (761)
+.|+.+.... .++++..++.+| .+||+.|+.+|++|+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999988765 678899999866 69999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
++..+...+++ ..+.+.....+..+|++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98543322211 122344556778999999999999998765
No 22
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-37 Score=312.20 Aligned_cols=185 Identities=24% Similarity=0.399 Sum_probs=166.1
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc--cCC----CCCCccchHHhH
Q 004320 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS----ADEDAHVIGDCV 238 (761)
Q Consensus 166 FGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~--~~~----~~~D~h~vAslL 238 (761)
||+||+.++.+ +..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|+|.. .+. ...|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999999975 45799999999999999999999999999999999999999999852 221 246999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.++ ++||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999999888889999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
||+|||++..+ +........++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987310 1123456799999999999998
No 23
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-37 Score=312.14 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=161.8
Q ss_pred ccccchHHHhhh------cCCCcHHHHHHHHHHHhcC-CCcCCccccCCCHHHHHHHHHHHhcCC-ccC---CCCCCccc
Q 004320 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV 233 (761)
Q Consensus 165 vFGvpL~~ll~~------~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~---~~~~D~h~ 233 (761)
|||+||+.+++. +.+||.+|.+|+.||+++| +.+|||||++|+..+++++++.|+.|. ..+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999975 3469999999999999987 799999999999999999999999984 222 23579999
Q ss_pred hHHhHHHhhhcCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcc
Q 004320 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (761)
Q Consensus 234 vAslLK~fLReLPePLlp~~ly~~ll~~~~~~-~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~ 312 (761)
||++||.|||+||+||+|.++|+.|..+.+.. +..+++..++.++ ++||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988776 7788999999966 689999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCC
Q 004320 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (761)
Q Consensus 313 NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (761)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999874 5799999999999986
No 24
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4e-37 Score=309.62 Aligned_cols=185 Identities=26% Similarity=0.378 Sum_probs=167.8
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhc
Q 004320 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (761)
Q Consensus 166 FGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLRe 244 (761)
||+||..++.++..||.+|.+|++||+.+|+++|||||++|+..+++++++.+|+|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3334678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccC
Q 004320 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 245 LPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr 324 (761)
||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999999888889999999866 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
++... + .+.+++...+...+|++||+.
T Consensus 160 ~~~~~------------~----~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA------------D----PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC------------C----HHHHHHHHHHHHHHHHHHhhC
Confidence 87321 1 123466678899999999974
No 25
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.7e-37 Score=313.96 Aligned_cols=187 Identities=20% Similarity=0.302 Sum_probs=162.6
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhh
Q 004320 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLR 243 (761)
Q Consensus 166 FGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLR 243 (761)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|. .....+.|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 5789999999999999999999999999999999999999999986 333456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCC
Q 004320 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~~~~~--------------~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkM 309 (761)
+||+||||+++|+.|+.+.... +...++..++.+| .+||+.|+.+|+||+.||++|++|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999886531 2346788999866 699999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 310 ta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
++.|||+||||+|||++.... ...++.+....++..+|++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 00123345567888999999986
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-37 Score=308.85 Aligned_cols=161 Identities=27% Similarity=0.506 Sum_probs=151.6
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccC-CCCCCccchHHhHHHhhh
Q 004320 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEF-SADEDAHVIGDCVKHVLR 243 (761)
Q Consensus 166 FGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~-~~~~D~h~vAslLK~fLR 243 (761)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|. .++ ..+.|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 999999999988899999999999999999999999999999999999999999985 333 245799999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcccccc
Q 004320 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Ll 323 (761)
+||+||+|+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888889999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004320 324 RPLL 327 (761)
Q Consensus 324 r~~~ 327 (761)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.1e-37 Score=313.52 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=159.1
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchHHhHHHhhh
Q 004320 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (761)
Q Consensus 166 FGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vAslLK~fLR 243 (761)
||+||..++.+ .++||.+|.+|++||+++|+.+|||||++|+..+++++++.||+|.. ....+.|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999876 46899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCC----------------------HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHH
Q 004320 244 ELPSSPVPASCCTALLEAYKIDR----------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~~~~~~----------------------~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va 301 (761)
+||+||||.++|+.|+.+..... ...++..++.+| .+||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764210 023467888866 6999999999999999999999
Q ss_pred hccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 302 ~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
+|++.|+||+.|||+||||+||||+..+. ..-++.+....++..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873210 00122344567788999999974
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=1.8e-36 Score=306.99 Aligned_cols=163 Identities=19% Similarity=0.309 Sum_probs=151.5
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc---CCCCCCccchHHhHHHh
Q 004320 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (761)
Q Consensus 166 FGvpL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~D~h~vAslLK~f 241 (761)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+++++++.||.|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999998532 24568999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcccc
Q 004320 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (761)
Q Consensus 242 LReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~ 321 (761)
||+||+||||+++|+.|+.+....+...++.+++.++ .+||++|+.+|++|+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999999888889999999866 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004320 322 LLRPLLAG 329 (761)
Q Consensus 322 Llr~~~~~ 329 (761)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1.6e-36 Score=305.88 Aligned_cols=184 Identities=26% Similarity=0.425 Sum_probs=163.1
Q ss_pred cccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchHHhHH
Q 004320 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK 239 (761)
Q Consensus 164 ~vFGvpL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vAslLK 239 (761)
++||+||..++++ .++||.+|.+|++||+++|+.+|||||++|+...++++++.++.|.. .+..+.|||++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 45799999999999999999999999999999999999999999964 4455689999999999
Q ss_pred HhhhcCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 240 ~fLReLPePLlp~~ly~~ll~~~~~~-~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
.|||+||+||+|.++|+.|+.+++.. ...+++..++.+| ++||+.|+.+|++|+.||++|++|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 5677888999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
||+|||.+.. .+ .+.....++.++++||+|
T Consensus 160 ~P~l~~~~~~----~~---------------~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VE---------------DMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----cc---------------cHHHHHHHHHHHHHHhcC
Confidence 9999998731 11 122345678999999986
No 30
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-36 Score=309.06 Aligned_cols=186 Identities=23% Similarity=0.381 Sum_probs=157.3
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCC-CCCCccchHHhHHHhhh
Q 004320 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCVKHVLR 243 (761)
Q Consensus 166 FGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~-~~~D~h~vAslLK~fLR 243 (761)
||.||.+ ++++ +|.+|++||++ |+.+|||||++|+..++++|++.||+|.. .+. .++|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888843 3445 78899999998 99999999999999999999999999963 333 35799999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCc
Q 004320 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~~~------------~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta 311 (761)
+||+||||.++|+.|+.+.+ ..+.+.++..++.++ .+||++|+.+|++|+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 234567788999855 69999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
.|||+||||+|||++..+ ...+ ......++.+|++||+||+.||+.+.
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999986211 0111 12335678999999999999999865
No 31
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.9e-36 Score=306.15 Aligned_cols=195 Identities=22% Similarity=0.318 Sum_probs=160.4
Q ss_pred cccchHHHhhhc---CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC--ccCC--CCCCccchHHhH
Q 004320 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV 238 (761)
Q Consensus 166 FGvpL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~--~~~~--~~~D~h~vAslL 238 (761)
||+||..++.+. ..||.+|.+|++||+.+|+.+|||||++|+..++++|++.||++. .++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 469999999999999999999999999999999999999999874 2222 224899999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchh
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~---~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLA 315 (761)
|.|||+||+||||.++|+.|+++..... ...++..++.+| ++||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 234466788755 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCC-ccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhc
Q 004320 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (761)
Q Consensus 316 ivfaP~Llr~~~~~~~-~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~ 368 (761)
+||||+||+++..+.. .+....+|....+ ....+...++++||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence 9999999999865432 1221223322222 23355678999999865
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=352.55 Aligned_cols=339 Identities=18% Similarity=0.243 Sum_probs=243.2
Q ss_pred cEEEEEeeeee----ecC----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee-----eeCcEEcCCCcceeec
Q 004320 18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL-----TLGGIDLNNSGSVVVR 84 (761)
Q Consensus 18 ~v~KeGyL~l~----KKG----~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i-----~L~~I~L~~~~sv~~~ 84 (761)
...|+||||+. |+| .....|+.-|.+|.++.++.|++.....++..+...- .-..+.+..|......
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 36789999955 443 4578899999999999999999976633322110000 0011222222221111
Q ss_pred --cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcchhhccC-------------CCcccCCCC----
Q 004320 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGIFRNDTN---- 145 (761)
Q Consensus 85 --~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a~~~g~-------------~~if~~~~~---- 145 (761)
..++..|.++. .+...+.|+|++.++|-.|+..+++......-...+++. +++......
T Consensus 1002 setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~~s 1079 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTVPS 1079 (1973)
T ss_pred hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCCcc
Confidence 22334555543 233679999999999999999987655422111111110 001000000
Q ss_pred -----------------c------------cccCcc------ccccCCC-----------CC------------CCcccc
Q 004320 146 -----------------D------------TIEGSF------HQWRDKR-----------PV------------KSLVVG 167 (761)
Q Consensus 146 -----------------~------------~~e~s~------~~~k~k~-----------~~------------~~~vFG 167 (761)
. ...... ..||+-. +- +-.+||
T Consensus 1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence 0 000111 1232210 00 124999
Q ss_pred cchHHHhh--hcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc------cCCCCCCccchHHhHH
Q 004320 168 RPILLALE--DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVK 239 (761)
Q Consensus 168 vpL~~ll~--~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~------~~~~~~D~h~vAslLK 239 (761)
|+|.+.-- -.+-||.+|+.|+..++.+||.+.||||++|+...|..|++.++.+.+ .+..+.|+++|.+|||
T Consensus 1160 Vrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK 1239 (1973)
T KOG4407|consen 1160 VRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLK 1239 (1973)
T ss_pred cccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHH
Confidence 99954221 134699999999999999999999999999999999999999999842 2345689999999999
Q ss_pred HhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcc
Q 004320 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (761)
Q Consensus 240 ~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfa 319 (761)
.|||.||+||||..+|..||++.+..+.-+|+..||.|| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||+||
T Consensus 1240 ~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FG 1318 (1973)
T KOG4407|consen 1240 MFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFG 1318 (1973)
T ss_pred HHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999999999999899999999966 7999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 320 P~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
|+|+|++. |+.+.+ ..+...+++||++||.+|+++|.+.-
T Consensus 1319 PsiVRts~--------------Dnm~tm---VthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1319 PSIVRTSD--------------DNMATM---VTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred cceeccCC--------------ccHHHH---hhcchhhhhHHHHHHhhhhheeccCC
Confidence 99999871 233333 34556789999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-35 Score=296.39 Aligned_cols=180 Identities=21% Similarity=0.392 Sum_probs=161.9
Q ss_pred ccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc---CCCCCCccchHHhHHHhhh
Q 004320 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR 243 (761)
Q Consensus 167 GvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~D~h~vAslLK~fLR 243 (761)
|.+|+...-...+||.+|.+|+.||+++|+++|||||++|+...++++++.|+.+... .....|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7778777777789999999999999999999999999999999999999999986422 2456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcccccc
Q 004320 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (761)
Q Consensus 244 eLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Ll 323 (761)
+||+||||.++|+.|+.+.+..+.++++..++.+| .+||++|+.+|++|+.||++|+.|++.|||++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999888899999999966 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhc
Q 004320 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (761)
Q Consensus 324 r~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~ 368 (761)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0122356789999999998
No 34
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-35 Score=302.74 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=161.5
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcC--CCcC----CccccCCCHHHHHHHHHHHhcCCccC-----CCCCCccc
Q 004320 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (761)
Q Consensus 166 FGvpL~~ll~~~-~~VP~il~~~i~~L~~~G--l~~E----GIFR~sg~~~~v~~L~~~ld~g~~~~-----~~~~D~h~ 233 (761)
||+||..+++.. ..||.+|.+|++||+++| +..+ ||||++|+.+.+++|++.||+|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999864 579999999999999975 3333 99999999999999999999985332 34689999
Q ss_pred hHHhHHHhhhcCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccC
Q 004320 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (761)
Q Consensus 234 vAslLK~fLReLPePLlp~~ly~~ll~~~~~------~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~N 307 (761)
||++||.|||+||+||||+++|+.|+++... .+.++|+.+++.++ .+||++|+.+|++|+.||.+|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 45789999999966 6999999999999999999999987666
Q ss_pred ---CCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCC
Q 004320 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (761)
Q Consensus 308 ---kMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (761)
||++.|||+||||+|+|+....... ....++..+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987321100 11245679999999999999986
No 35
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=4.6e-35 Score=296.13 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=158.1
Q ss_pred cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhcCCCCCCChhhH
Q 004320 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (761)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLReLPePLlp~~ly 255 (761)
...||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||+||+||||.++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3569999999999999999999999999999999999999999885 334556799999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCCCCCCcccc
Q 004320 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (761)
Q Consensus 256 ~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~ 335 (761)
+.|+++.+..+.+.++..++.+| ..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999888889999999966 59999999999999999999999 999999999999999999999873211
Q ss_pred ccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccc
Q 004320 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (761)
Q Consensus 336 ~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~I 371 (761)
..++++..+..++.+|+.||+.-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 01344566677889999999987653
No 36
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.7e-35 Score=297.43 Aligned_cols=171 Identities=24% Similarity=0.403 Sum_probs=150.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHH-HhcC-----CccCCC-CCCccchHHhHHHhhhcCCCCCC
Q 004320 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (761)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~-ld~g-----~~~~~~-~~D~h~vAslLK~fLReLPePLl 250 (761)
+..|.||.+|++||+++|+.+|||||++|+...|++++.. ++.+ ..++.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456789999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCCCCC
Q 004320 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (761)
Q Consensus 251 p~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~ 330 (761)
|+++|+.|+.+.+..+.+.++..++.+| .+||+.|+.+|++|+.||++|++|++.|||++.|||+||||+|||++..+
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 9999999999999988899999999966 69999999999999999999999999999999999999999999987210
Q ss_pred CccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 331 ~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
.+++......+.+|++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 12344567788999999987
No 37
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.6e-35 Score=292.87 Aligned_cols=178 Identities=21% Similarity=0.250 Sum_probs=152.3
Q ss_pred cccchHHHhhhc------CCCcHHHHHHHHHHHh-cCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhH
Q 004320 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (761)
Q Consensus 166 FGvpL~~ll~~~------~~VP~il~~~i~~L~~-~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslL 238 (761)
||+||++++.+. ..||.+|..|++||.+ +|+.+|||||++|+...++++++.+|+|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 899999999999999999999999999987666678999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcc--ccCCCCccchhh
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA 316 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s--~~NkMta~NLAi 316 (761)
|.|||+||+||+|.++|+.++.+... ...++.+| .+||+.|+.+|.||+.||+.|++++ +.||||++|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886532 23466655 6999999999999999999999754 789999999999
Q ss_pred hccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 317 vfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
||||+|||++..+ .. ..+....+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~--------------~~---~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDD--------------PR---VIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCC--------------HH---HHHHccHHHHHHHHHHhcC
Confidence 9999999986321 11 1234456788999999986
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.9e-34 Score=288.69 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=150.0
Q ss_pred hHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhcCCCC
Q 004320 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (761)
Q Consensus 170 L~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLReLPeP 248 (761)
|.+.+...+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.||.+. .......|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 3333444578999999999999999999999999999775 788999999863 23345689999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHH-hhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCC
Q 004320 249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (761)
Q Consensus 249 Llp~~ly~~ll~~~~-~~~~e~ri~~lk~lIl-~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (761)
|||+++|+.|+++.. ..+.++++..++.+|. ..||+.|+.+|+||+.||++|++|+..|+|++.|||+||||+|||++
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 999999999999874 5567788999998652 27999999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhc
Q 004320 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (761)
Q Consensus 327 ~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~ 368 (761)
.... ....+...+|++||.++
T Consensus 164 ~~~~---------------------~~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 164 PASS---------------------DSPEFHIRIIEVLITSE 184 (200)
T ss_pred cccc---------------------cchhhHHHHHHHHHHHH
Confidence 4311 11245678999999864
No 39
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=309.14 Aligned_cols=324 Identities=19% Similarity=0.304 Sum_probs=241.7
Q ss_pred CCcEEEEEeeeeeecCC--------CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee--ec-
Q 004320 16 SNTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VR- 84 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~--------~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~--~~- 84 (761)
+++++..|+||..-... .+..-.++||||-|+.|+||.+.....|.+ .|.+.....+. ..
T Consensus 489 s~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd 559 (1186)
T KOG1117|consen 489 SQSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPD 559 (1186)
T ss_pred cccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCC
Confidence 35677779999663321 244568899999999999999998877554 23333322211 11
Q ss_pred --cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcchh---------------------hccCCCccc
Q 004320 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL---------------------VMGHNGIFR 141 (761)
Q Consensus 85 --~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a~---------------------~~g~~~if~ 141 (761)
....++|++......+|.|+|.+++.+++..|..+|.+... |.-+. ...++|+|.
T Consensus 560 ~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhfv--p~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfs 637 (1186)
T KOG1117|consen 560 TYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHFV--PLFAENLLAADYDLLGRLFYKDCHALDQARKGWFS 637 (1186)
T ss_pred CCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhcC--chHHHHhccchhhhhhhhhhcChhhhhhcccccee
Confidence 12346666666667899999999999999999999988753 22111 112367777
Q ss_pred CCCCcc-----------------------ccCccccccCCCCCCCcccccc----------------------------h
Q 004320 142 NDTNDT-----------------------IEGSFHQWRDKRPVKSLVVGRP----------------------------I 170 (761)
Q Consensus 142 ~~~~~~-----------------------~e~s~~~~k~k~~~~~~vFGvp----------------------------L 170 (761)
.+.+.. +..+..+.-.+.+.--..=|+. |
T Consensus 638 l~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~L 717 (1186)
T KOG1117|consen 638 LDGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTAL 717 (1186)
T ss_pred cCCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchh
Confidence 655421 1111111110000000001111 1
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC---CCCCCccchHHhHHHhhhcCCC
Q 004320 171 LLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPS 247 (761)
Q Consensus 171 ~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~D~h~vAslLK~fLReLPe 247 (761)
.+..-..+.||.||..||.|+.++|+..|||||++|...++.+|...|-+....+ ..+.-+.+|+++||.|||+|++
T Consensus 718 qeqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdldd 797 (1186)
T KOG1117|consen 718 QEQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDD 797 (1186)
T ss_pred hhhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCc
Confidence 1111114679999999999999999999999999999999999999998874322 2456789999999999999999
Q ss_pred CCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCC
Q 004320 248 SPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (761)
Q Consensus 248 PLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~ 327 (761)
||+|.++|..|+++....+.++++..+..+|. .||..||.||..||.||++|..+++.|+|+++|||.||||+||...-
T Consensus 798 pLft~~~~~~w~eaae~~d~~Er~~rY~~lI~-~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg 876 (1186)
T KOG1117|consen 798 PLFTKELYPYWIEAAETQDDKERIKRYGALIR-SLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG 876 (1186)
T ss_pred cccchhhhhhHHHhhhccchHHHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC
Confidence 99999999999999999999999999999774 99999999999999999999999999999999999999999998751
Q ss_pred CCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 328 AGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 328 ~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
. ..+..+|++-||.+|..+|.-++
T Consensus 877 q-------------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 877 Q-------------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred C-------------------------chhhhhHHHHHhcCceEEEEecH
Confidence 0 13567899999999999998765
No 40
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-31 Score=302.96 Aligned_cols=320 Identities=19% Similarity=0.311 Sum_probs=233.8
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecCh
Q 004320 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (761)
Q Consensus 34 ~k~WKKRWfVL~~~~L~yYKd~~~s~p~~---~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSe 110 (761)
...|..-|..+.++.++||.+.+.+..-+ ...-........+..............-+++......+..|+++-+++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 34599999999999999999876544322 111011111111111111000011111233433344567899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhccCCCcccCC--CCc--------------------------c---ccCc--------
Q 004320 111 EDLYEWKTALELALAQAPSAALVMGHNGIFRND--TND--------------------------T---IEGS-------- 151 (761)
Q Consensus 111 eE~~eWI~AL~~aI~~aP~~a~~~g~~~if~~~--~~~--------------------------~---~e~s-------- 151 (761)
.....|-.++..++...|+++..-.+ |..+.. .+. . +.+.
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~-g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~ 428 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQ-GDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDP 428 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCC-CCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccch
Confidence 99999999999999866654422111 111000 000 0 0000
Q ss_pred -------------cccccCC-CCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHH
Q 004320 152 -------------FHQWRDK-RPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ 216 (761)
Q Consensus 152 -------------~~~~k~k-~~~~~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~ 216 (761)
....+.+ .+...++||++|+.+|++ .+.||.+|..|+..|+..|++.+||||++|+...|.+|+.
T Consensus 429 ~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~ 508 (650)
T KOG1450|consen 429 QKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLRE 508 (650)
T ss_pred HHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHH
Confidence 0000112 233478999999999987 4569999999999999999999999999999999999999
Q ss_pred HHhcCC-ccC--CCCCCccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHH
Q 004320 217 EYEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRI 293 (761)
Q Consensus 217 ~ld~g~-~~~--~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~L 293 (761)
++|... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||.+|+.||+||
T Consensus 509 ~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~l 587 (650)
T KOG1450|consen 509 QSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYL 587 (650)
T ss_pred hcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHH
Confidence 999543 333 33479999999999999999999999999999999999988899999999977 59999999999999
Q ss_pred HHHHHHHHhccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccC
Q 004320 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (761)
Q Consensus 294 l~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~ 373 (761)
+.||.+|..|++.|||+.+||||||||+|+.+.... ++. +........||+.||+++..+|+
T Consensus 588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~~~-------a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------SSE-------AIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHHhccccccccccceEEEeccccccccccc-----------cch-------hhHHhHHHHHHHHHHHhhHhhcc
Confidence 999999999999999999999999999999975221 111 23346788999999999999996
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=5.3e-31 Score=261.23 Aligned_cols=170 Identities=29% Similarity=0.480 Sum_probs=154.7
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC--CCCCCccchHHhHHHhhhcCCCCCCChhhHH
Q 004320 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (761)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~--~~~~D~h~vAslLK~fLReLPePLlp~~ly~ 256 (761)
.||.+|..|+.||+++|+++|||||++|+..+++++++.++.|.... ....|||++|++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999996544 6779999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCCCCCCccccc
Q 004320 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (761)
Q Consensus 257 ~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~ 336 (761)
.|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+||||+|+|++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~------ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV------ 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH------
Confidence 9999998888889999999966 699999999999999999999999999999999999999999999873210
Q ss_pred cCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 337 ~~~~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
.......+...+|++||+|
T Consensus 155 ------------~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 155 ------------ASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred ------------HHHHHHHHHHHHHHHHHhc
Confidence 1234557789999999987
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=8.5e-30 Score=288.27 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=175.9
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHH-HHHh-cCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCcc
Q 004320 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAH 232 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~----~~~VP~il~~~i~-~L~~-~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h 232 (761)
......+|||++..+... .+-||.++.-+.. +|+. .|++.|||||++|...+++.+|++||.|.+......|||
T Consensus 140 ls~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH 219 (577)
T KOG4270|consen 140 LSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVH 219 (577)
T ss_pred ccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHH
Confidence 444567999999776643 3447999998888 6664 889999999999999999999999999964443378999
Q ss_pred chHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcc
Q 004320 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (761)
Q Consensus 233 ~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~ 312 (761)
+||++||.|||+||+|++++.+|+.|+.+.+..+.+++...++.++ .+||+.|+.+|+|+|.||+.|++++++||||++
T Consensus 220 ~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~ 298 (577)
T KOG4270|consen 220 CLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR 298 (577)
T ss_pred HHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 9999999999999999999999999999999999999999999955 699999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcccc
Q 004320 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (761)
Q Consensus 313 NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~~~ 378 (761)
|||+||||+|+|+.. ..+.++.+....+.+..+|+..|++++..|+.....
T Consensus 299 NlAiV~gPNl~~~~~---------------p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~ 349 (577)
T KOG4270|consen 299 NLAIVFGPNLLWMKD---------------PLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELEF 349 (577)
T ss_pred hceeEecCCccccCC---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 999999999999872 234445555566677778888888999988887643
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-30 Score=286.18 Aligned_cols=209 Identities=24% Similarity=0.342 Sum_probs=174.7
Q ss_pred CCcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc---cCCCCCCccchHHh
Q 004320 162 KSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDC 237 (761)
Q Consensus 162 ~~~vFGvpL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~---~~~~~~D~h~vAsl 237 (761)
-+.||||||..++++. ..||.+|.+++.||+++|++++||||++|...+|+.|++.++..-. ..++....|+||++
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 4579999999999874 4699999999999999999999999999999999999999887422 33556778999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhh
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAiv 317 (761)
||.|||+||+||||.++.+.|+.+++.....+++.+++.+|+ .||.+||.+|+.|+.||.+|+.+++.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCC-----CCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 318 MAPLLLRPLLAGECELEDDFDM-----NGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~-----~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
|||+||........ ..+..+ .|-.. + ..+....-+..++..||.+++.+|....
T Consensus 456 mAPsLF~l~~~~~d--~spr~~~~k~~~g~p~-~--kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 456 MAPSLFHLNALKLD--SSPRVRQKKSETGKPD-Q--KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred hcchHHhhccCCCC--CCccccccccccCCCc-h--HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999976532211 000000 01000 1 1122334467899999999999998765
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=1.1e-29 Score=262.19 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=137.9
Q ss_pred CcccccchHHHhhh-----------------------cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHH----HHHHH
Q 004320 163 SLVVGRPILLALED-----------------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRV 215 (761)
Q Consensus 163 ~~vFGvpL~~ll~~-----------------------~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~----v~~L~ 215 (761)
.++||.+|+.+..- ...||.+|.+|++||+++|+.+|||||++|+... +++++
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~ 89 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIR 89 (220)
T ss_pred cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHH
Confidence 45788888776641 1248999999999999999999999999999999 99999
Q ss_pred HHHhcCCccCCCCCCccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHh-hCChhHHHHHHHHH
Q 004320 216 QEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRIL 294 (761)
Q Consensus 216 ~~ld~g~~~~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~-~LP~~N~~lL~~Ll 294 (761)
+.+|+|.... ...|+|+||++||.|||+||+||||+++|+.|+++... +. ..++. +++ +||+.|+.+|.||+
T Consensus 90 ~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-~~----~~~~~-ll~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 90 DALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-NE----EDKRQ-VIRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-cH----HHHHH-HHHhhCCHHHHHHHHHHH
Confidence 9999995433 67899999999999999999999999999999998622 21 23455 446 89999999999999
Q ss_pred HHHHHHHhccccCCCCccchhhhccccccCCCC
Q 004320 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (761)
Q Consensus 295 ~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~ 327 (761)
.||++|+++++.|+|++.|||+||||+|||++.
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 999999999999999999999999999999984
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=4.5e-29 Score=244.77 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=152.1
Q ss_pred cHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc-CCCCCCccchHHhHHHhhhcCCCCCCChhhHHHHH
Q 004320 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (761)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~-~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll 259 (761)
|.+|.+|+.||+++|+.++||||++|+..+++++++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999754 56678999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCCCCCCccccccCC
Q 004320 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (761)
Q Consensus 260 ~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~ 339 (761)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9999888899999999966 59999999999999999999999999999999999999999999987321
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 004320 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (761)
Q Consensus 340 ~g~~~aql~~a~~~~~~~~~iVe~LIen 367 (761)
.........+..+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11233456678999999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-30 Score=291.94 Aligned_cols=190 Identities=21% Similarity=0.372 Sum_probs=165.6
Q ss_pred ccCCCC-CCCcccccchHHHhh-----hcCCCcHHHHHHHHHHH-hcCCCcCCccccCCCHHHHHHHHHHHhcC-CccC-
Q 004320 155 WRDKRP-VKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF- 225 (761)
Q Consensus 155 ~k~k~~-~~~~vFGvpL~~ll~-----~~~~VP~il~~~i~~L~-~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~- 225 (761)
.+.+++ .++.|||.||...+. ...++|.+|.+|++||+ .+|+++|||||++|.+..|+.|++.||.+ +.+.
T Consensus 888 s~~~~~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~ 967 (1112)
T KOG4269|consen 888 SKRKPSVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDIL 967 (1112)
T ss_pred ccCCCcceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhh
Confidence 344433 467899987754432 24579999999999999 59999999999999999999999999998 4332
Q ss_pred --CCCCCccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhc
Q 004320 226 --SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH 303 (761)
Q Consensus 226 --~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~ 303 (761)
..+.|||+|||+||+|||+||+|||+.++|..|.......++..+...+..+|. .||++|+.+|.+|+.||++|+.+
T Consensus 968 ~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ 1046 (1112)
T KOG4269|consen 968 SMDSEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEK 1046 (1112)
T ss_pred hccccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999999999999999999999774 89999999999999999999999
Q ss_pred cccCCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCccc
Q 004320 304 AHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (761)
Q Consensus 304 s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (761)
+.+|||+++|||+||+|+|.+|. .+...+|-+|+.||.+..+
T Consensus 1047 ekvNKMnlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1047 EKVNKMNLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred cccccccccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchH
Confidence 99999999999999999999985 3355677889999988653
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2e-28 Score=236.78 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=136.0
Q ss_pred cHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc--CCCCCCccchHHhHHHhhhcCCCCCCChhhHHHH
Q 004320 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (761)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~l 258 (761)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|... .....|+|+||++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 6778999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCC
Q 004320 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (761)
Q Consensus 259 l~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (761)
+.+....+.++++..++.++ .+||+.|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888888999999999966 59999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.3e-27 Score=255.96 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=175.0
Q ss_pred CCCCCCCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcC-CCcCCccccCCCHHHHHHHHHHHhcCCccCCCC-CCc
Q 004320 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDA 231 (761)
Q Consensus 157 ~k~~~~~~vFGvpL~~ll~~---~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~-~D~ 231 (761)
.+.+..+..||+||..+.+. +..+|.+|..|+.+|..+| +.+|||||.+++.+.+.++.+.+++|..+..+. .|+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35678899999999888764 5679999999999999999 999999999999999999999999997544444 459
Q ss_pred cchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCc
Q 004320 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (761)
Q Consensus 232 h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta 311 (761)
|..|.+||.|||+||+||++.++|..+...... +...+...+++++-.+||+.|+.++++++.||.+|++|+.+|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~-~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNV-DKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccc-hHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 999999999999999999999999988766554 3467888889888767999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCccc
Q 004320 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (761)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (761)
.|||+||||+|+|+..... .+...+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 9999999999999873210 1234567899999999999999998764
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1e-26 Score=254.35 Aligned_cols=204 Identities=22% Similarity=0.384 Sum_probs=168.2
Q ss_pred CCcccccchHHHhhh-------------cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-----Cc
Q 004320 162 KSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----KT 223 (761)
Q Consensus 162 ~~~vFGvpL~~ll~~-------------~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-----~~ 223 (761)
.+.+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..+|++|++.|+++ +.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~ 142 (412)
T KOG2710|consen 63 DGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDV 142 (412)
T ss_pred ceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccc
Confidence 445666666554322 234899999999999999999999999999999999999999998 35
Q ss_pred cCCCCCCccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhc
Q 004320 224 EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH 303 (761)
Q Consensus 224 ~~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~ 303 (761)
..+++++||+||++||.|||+||+||||.++|+.|+..+.....++++..++.++. .||++|+.+|.+|+.||+.|+.|
T Consensus 143 ~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~ 221 (412)
T KOG2710|consen 143 NDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASH 221 (412)
T ss_pred cccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhcc
Confidence 56778999999999999999999999999999999999999887799999998664 99999999999999999999999
Q ss_pred cccC-----------CCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 304 AHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 304 s~~N-----------kMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
++.| +|++.|||+||+|+++......... .++.+-.. ......+..++..||+||+.+|
T Consensus 222 s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~~~----~s~~~~~~------~s~~~~i~~~~~~~~~N~e~~f 291 (412)
T KOG2710|consen 222 AEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSHKE----LSVTGVAN------ESESEAIVNFAQMMIENLEALF 291 (412)
T ss_pred cccccccccccccCcccchhhhhhhhcchhhhcccCCCcc----cccccccc------hhhHHHHHHHHHHhhhhHHHhh
Confidence 9999 9999999999999999953211111 11111110 1122356788999999999999
Q ss_pred CCcc
Q 004320 373 DDES 376 (761)
Q Consensus 373 ~~~~ 376 (761)
..+.
T Consensus 292 ~ip~ 295 (412)
T KOG2710|consen 292 QIPP 295 (412)
T ss_pred cCCc
Confidence 9443
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.92 E-value=6.6e-26 Score=253.14 Aligned_cols=241 Identities=18% Similarity=0.183 Sum_probs=213.1
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhH
Q 004320 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslL 238 (761)
.+.++.+||.||..+|.+.+ +|..++.++-+|...|.-++||||..++...+++|++.++.|..+..+...+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 44568899999999999877 99999999999999999999999999999999999999999977777778999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||.+|..+|..++|+.|+-.....+.+++|..|+++. .+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 9999999999999999999999999999999999999955 799999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCccccccCCCCCCCCCCCCCCCCCC
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~~~~~s~s~~ss~~~s~~e~ssd 398 (761)
+|+++++......+++.++ .+++.-+++|||+||-.||+++.... ...++..+...|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~l----------------n~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGL----------------NGKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhccc----------------cCCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhh
Confidence 9999999865544444322 24466789999999999999999655 4445556677788888
Q ss_pred ccccccCCCCCCCCCCCCCCCCCC
Q 004320 399 EENLDMKNNGYHDAQNEVDPESDD 422 (761)
Q Consensus 399 ~~~~~~~d~~~~s~e~e~~~~~d~ 422 (761)
-+..+. |+.||+.+++++...|-
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 888887 99999999988776554
No 51
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.91 E-value=3.1e-24 Score=190.05 Aligned_cols=87 Identities=61% Similarity=0.747 Sum_probs=84.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 614 ~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~-~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
+||.+.+++|.+|||||.+||+||++|+++|.|||+||++++|++ ++|++||+++++||+|||+||+||++||++|++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999988 5889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004320 693 HHQLNQQR 700 (761)
Q Consensus 693 ~~~l~~~~ 700 (761)
+++|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 52
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=5.5e-24 Score=257.69 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=150.1
Q ss_pred ccccchHHHhh-hcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhh
Q 004320 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (761)
Q Consensus 165 vFGvpL~~ll~-~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fL 242 (761)
.||+.|..++. ....||.++.+|+.||+.+|+.+|||||++|...+++.|...|+.|. .+.....|+|+++++||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999998 56789999999999999999999999999999999999999999986 55667899999999999999
Q ss_pred hcCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhh
Q 004320 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (761)
Q Consensus 243 ReLPePLlp~~ly~~ll~~~~~~~~e------~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAi 316 (761)
|+||+|||++.+|+.|+.+.+..... +++..+..++ ..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999998883333 4888899855 6999999999999999999999999999999999999
Q ss_pred hccccccCCCC
Q 004320 317 CMAPLLLRPLL 327 (761)
Q Consensus 317 vfaP~Llr~~~ 327 (761)
||||+|+|++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 53
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.88 E-value=2.4e-22 Score=217.48 Aligned_cols=147 Identities=24% Similarity=0.357 Sum_probs=136.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhHHHhhhcCCCCCCChhhHH
Q 004320 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (761)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslLK~fLReLPePLlp~~ly~ 256 (761)
..||.+|..|+..|+.+|+..+||||++|...++++|+..|-+|+ .......|+|+||++||.|||+|.+||||..+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 458999999999999999999999999999999999999999997 4445678999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCC
Q 004320 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (761)
Q Consensus 257 ~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (761)
+|+++....+...-+.++-..|. .||..||.+|.||+-|+++||+ +..|||+..|||.+|||+++--+
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~ 507 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHA 507 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccC
Confidence 99999999988888888887775 8999999999999999999998 77999999999999999999865
No 54
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.73 E-value=4.2e-18 Score=196.19 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=147.6
Q ss_pred CCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-CccC-CCCCCccchHHhHH
Q 004320 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK 239 (761)
Q Consensus 162 ~~~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~-~~~~D~h~vAslLK 239 (761)
....||.||..+......||.++++|+.||++.|+.+|||||++|+......++.+|.+. +.++ .-+..+|++|+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 456999999888888889999999999999999999999999999999999999999873 3333 23567999999999
Q ss_pred HhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhcc
Q 004320 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (761)
Q Consensus 240 ~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfa 319 (761)
.||-.||+||+|+.+...|.+++.+.+...++..++..+ ..||+.|+.+++|++.||.+|+....+|.||..||+|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999855 6999999999999999999999999999999999999998
Q ss_pred cccc
Q 004320 320 PLLL 323 (761)
Q Consensus 320 P~Ll 323 (761)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 55
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.71 E-value=3.4e-17 Score=170.28 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=138.5
Q ss_pred CcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC--ccCC--CCCCccchHHh
Q 004320 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (761)
Q Consensus 163 ~~vFGvpL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~--~~~~--~~~D~h~vAsl 237 (761)
..+||.+|+.++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+-|+..|+... ++.. ..-|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 349999999999874 567889999999999999999999999999999999999998864 2222 12588999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccch
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~---~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NL 314 (761)
+|.||||||+||++...|+..+++... .+.+.....+-. |+.-||..++..|..++.||..|..++..|+||+..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999888877542 223333444555 4468999999999999999999999999999999999
Q ss_pred hhhccccccCCCC
Q 004320 315 AACMAPLLLRPLL 327 (761)
Q Consensus 315 AivfaP~Llr~~~ 327 (761)
|.||||.||-...
T Consensus 341 s~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 341 SLIFAPLLFFCLD 353 (442)
T ss_pred HHHhhhhHHHhhc
Confidence 9999999987653
No 56
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.66 E-value=6.1e-16 Score=157.91 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=143.2
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHH--HHHHhcCCCc--CCccccCCCHHHHHHHHHHHhcCCcc--CCCCCCcc----
Q 004320 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAH---- 232 (761)
Q Consensus 164 ~vFGvpL~~ll~~-~~~VP~il~~~i--~~L~~~Gl~~--EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~D~h---- 232 (761)
++||+|+.+-+.+ +...|..+.... +++..+.++. -|+||.++...-+...++.++.-... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899998554444 445677775555 4555544443 79999999888888888888775211 11111112
Q ss_pred -------chHHhHHHhhhcCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHh
Q 004320 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (761)
Q Consensus 233 -------~vAslLK~fLReLPePLlp~~ly~~ll~~~~~---~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~ 302 (761)
+|+.+++.||++||+||+|..+|+.++.++.. ...+.++++++.+++ .||++||..|+.|+.||++|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999988888773 347889999998776 9999999999999999999999
Q ss_pred cc-------ccCCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCc
Q 004320 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (761)
Q Consensus 303 ~s-------~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~ 375 (761)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||.-+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 25777 999999999999872 11 1346789999999999999865
Q ss_pred c
Q 004320 376 S 376 (761)
Q Consensus 376 ~ 376 (761)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.66 E-value=5e-16 Score=142.09 Aligned_cols=91 Identities=29% Similarity=0.488 Sum_probs=66.8
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCc---cee------eccCCcce
Q 004320 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG---SVV------VREDKKLL 90 (761)
Q Consensus 21 KeGyL~l~KKG~~-~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~---sv~------~~~~kk~~ 90 (761)
|+| |+.|+|+. .++|++|||||+++.|+||+++.+..|.| .|+|..+. .|. ......++
T Consensus 1 KeG--~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G---------~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEG--FMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKG---------EVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred Cce--eEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCc---------EEEeeccccceeEeccCCccccccccce
Confidence 689 55698876 69999999999999999999988766443 23333221 110 01122236
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
|.|.. .+|+|+|+|+|++|+.+||.||++++.
T Consensus 70 F~i~t---~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVT---PERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEe---CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 66644 389999999999999999999999986
No 58
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.65 E-value=7.7e-16 Score=140.04 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=69.8
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc------CCcceEE
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKLLTV 92 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~------~kk~~Fv 92 (761)
|+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|+|..+ .+.... .+.++|.
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~-~v~~~~~~~~~~~~~~~F~ 69 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTA-RVEHSEDQAAMVKGPNTFA 69 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEeccc-EEEEccchhhhcCCCcEEE
Confidence 78999554 8888889999999999999999999987655 3444566533 221111 2456777
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
|.. ..|+|+|+|+|++|+.+||.+|+..+
T Consensus 70 I~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 70 VCT---KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EEC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 743 37999999999999999999998765
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.62 E-value=1.9e-15 Score=137.20 Aligned_cols=90 Identities=28% Similarity=0.403 Sum_probs=71.9
Q ss_pred EEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CcceE
Q 004320 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (761)
Q Consensus 21 KeGyL~l~KKG~---~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~------kk~~F 91 (761)
.+| |+.|+|+ .+|+|++|||+|+++.|+|||+.....|. .+.|+|+.+.+|....+ +++||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~--------~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPD--------DCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCC--------CceEEcccceEEeeccccccccccCcEE
Confidence 479 7778888 79999999999999999999988665422 24588888777655432 23688
Q ss_pred EEEecCCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 92 vit~~~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
.+.. ..|+|||+|+|++++++||++|+.|
T Consensus 72 ei~t---p~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 72 EIFT---ADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EEEc---CCceEEEEeCCHHHHHHHHHHHHhh
Confidence 7754 3699999999999999999999876
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.59 E-value=7e-15 Score=132.23 Aligned_cols=92 Identities=27% Similarity=0.386 Sum_probs=66.2
Q ss_pred EEEeeeeeec-CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEecC
Q 004320 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (761)
Q Consensus 21 KeGyL~l~KK-G~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk~~Fvit~~~ 97 (761)
++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..+. +.|.|..+..... ...++++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~---------~~I~L~~~~v~~~~~~~k~~~F~I~~-- 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAE---------GLIFLSGFTIESAKEVKKKYAFKVCH-- 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccc---------eEEEccCCEEEEchhcCCceEEEECC--
Confidence 6898875533 22 46799999999999999999998876533 2344444322111 234567777753
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHH
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
++.++|+|+|+|++++.+||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34599999999999999999999864
No 61
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.58 E-value=6.7e-15 Score=135.34 Aligned_cols=94 Identities=23% Similarity=0.254 Sum_probs=66.5
Q ss_pred EEEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c------CC
Q 004320 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (761)
Q Consensus 20 ~KeGyL~l~KKG~---~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---~------~k 87 (761)
+|+||||++.+|. +.++|++|||||+++.|+||++..+.... +.|.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~-------~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGS-------KKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccC-------cceeEECCcceEEEEecCCcCccccccc
Confidence 5899888553332 35599999999999999999997653111 3444666655443221 1 23
Q ss_pred cceEEEEecCCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 88 k~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
+++|.|.+ .+++|||+|+|++|+++||.+|+.+
T Consensus 74 ~~~F~i~t---~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVH---DEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEe---CCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 56777655 2689999999999999999999853
No 62
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.57 E-value=1.1e-14 Score=131.24 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=65.3
Q ss_pred EEeeeeeecCC--CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004320 22 SGPLFISSKGI--GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (761)
Q Consensus 22 eGyL~l~KKG~--~~k~WKKRWfVL~~--~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~ 97 (761)
+|||+ |.|+ ..+.|++|||||++ +.|+||+++.+.. +++.|+|..+..+.....+++.|.|..
T Consensus 2 ~GyL~--K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t-- 68 (95)
T cd01265 2 CGYLH--KIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS-- 68 (95)
T ss_pred cccEE--EecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc--
Confidence 59665 6554 47999999999984 5899999987765 455566666443322233355666654
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHH
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
.+|+|+|+|+|++|+++||.+|+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3799999999999999999999875
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.56 E-value=1.5e-14 Score=130.72 Aligned_cols=90 Identities=27% Similarity=0.478 Sum_probs=65.8
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---------cCCcc
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL 89 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~--~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---------~~kk~ 89 (761)
++||| .|+|+..+.|++|||||++ +.|+||+++.+..|. +.|+|..++.+... ....+
T Consensus 1 ~~G~L--~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~---------g~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYL--YKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK---------GCIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEE--EEcCCCCCCccceEEEEECCCCEEEEecCCCCCccc---------eEEEcceeEEEeecCCCCCCCCCCCCce
Confidence 47955 5999889999999999995 499999998776644 33455443332211 12334
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
+|.+.. .+|+|+|+|++++|+.+||.+|+.+|
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 565543 47999999999999999999999864
No 64
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=4.4e-14 Score=133.49 Aligned_cols=99 Identities=27% Similarity=0.491 Sum_probs=71.7
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEecCC
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR 98 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk~~Fvit~~~~ 98 (761)
.|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++++|.|.....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVSIREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence 3789665 8888889999999999999999999977655 334455554322111 134567776644221
Q ss_pred ------------------CCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 99 ------------------~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
..++|+|+|+|++|+.+|+.+|+.++...|.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 2368999999999999999999999975543
No 65
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.53 E-value=3.7e-14 Score=143.41 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCCcCCc---cccCCCHHHHHHHH-HHHhcCC--ccC-------CCCCCccchHHhHHHhhhcCCCC
Q 004320 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRV-QEYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS 248 (761)
Q Consensus 182 ~il~~~i~~L~~~Gl~~EGI---FR~sg~~~~v~~L~-~~ld~g~--~~~-------~~~~D~h~vAslLK~fLReLPeP 248 (761)
.+|..|.+.|+.+|+++++| ||..++...++.+. ..|+.+. ... ....|||+++++||.|||.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999 99999999999884 4566542 111 23479999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCC
Q 004320 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (761)
Q Consensus 249 Llp~-~ly~~ll~~~~~~~~e~ri~~lk~lIl~~L-P~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (761)
+++. +.|..|...-+..+ .-..+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999998644322 22347777664333 78899999999999999999999999999999999999999987
Q ss_pred C
Q 004320 327 L 327 (761)
Q Consensus 327 ~ 327 (761)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 4
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.53 E-value=4.2e-14 Score=126.59 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=67.8
Q ss_pred EEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCc
Q 004320 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (761)
Q Consensus 22 eGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~gr 101 (761)
+| |+.|+|...++|++|||||+++.|.||+++.+..+. +.|.|+|..+..+ ..+.++..|.|... .++
T Consensus 2 ~G--~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~-------~~G~I~L~~~~i~-~~~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NG--VLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHG-------CRGSIFLKKAIIA-AHEFDENRFDISVN--ENV 69 (91)
T ss_pred ce--EEEEeccccCCCceEEEEEECCEEEEEecCccCcCC-------CcEEEECcccEEE-cCCCCCCEEEEEeC--CCe
Confidence 69 555999999999999999999999999998764321 3445666654332 22334567777542 359
Q ss_pred eEEEEecChHHHHHHHHHHHH
Q 004320 102 AFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 102 ty~LqAeSeeE~~eWI~AL~~ 122 (761)
+|+|.|++++|+++||.||+.
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999974
No 67
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=6.9e-14 Score=127.99 Aligned_cols=89 Identities=30% Similarity=0.531 Sum_probs=64.1
Q ss_pred EEEeeeeeecC-------CCCCCcEEEEEEEe-CCeEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCcceeecc---CCc
Q 004320 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (761)
Q Consensus 21 KeGyL~l~KKG-------~~~k~WKKRWfVL~-~~~L~yYKd~~-~s~p~~~~~~~i~L~~I~L~~~~sv~~~~---~kk 88 (761)
+.|||++.--| ..+|+||||||||+ ++.|+||++.. ++. +.+.|+|+.+..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47977754333 24889999999998 56888887763 444 34557777776654332 233
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHH
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~ 121 (761)
++|.|.+ .+|+|||.|+|++|+++|+.+|.
T Consensus 72 ~~f~I~t---p~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 72 FSICILT---PDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cEEEEEC---CCceEEEEeCCHHHHHHHHHHHH
Confidence 5666644 37999999999999999999996
No 68
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.49 E-value=1.5e-13 Score=125.60 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=69.4
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~-~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~ 97 (761)
|+|+| |+.|+|...+.|++|||+|+ ++.|+||++++..... ..++++++.+..+........+.+.|.|....
T Consensus 1 v~k~G--~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEG--WLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEE--EEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999 55599999999999999999 7889999887643321 24467777776654433334555677775211
Q ss_pred ---CCCceEEEEecChHHHHHHHHHHHHH
Q 004320 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 98 ---~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 45699999999999999876
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.48 E-value=1.4e-13 Score=125.33 Aligned_cols=91 Identities=29% Similarity=0.399 Sum_probs=67.2
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--Ccce
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLL 90 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~------~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~--kk~~ 90 (761)
|.|+|||. |. ++|+||||||+++ .|.||++++.....+ ..+.+.|+|..|..+....+ ++++
T Consensus 2 v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~~ 71 (101)
T cd01257 2 VRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRHL 71 (101)
T ss_pred ccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCeE
Confidence 78999555 54 7899999999998 799999987532110 11556688888777654333 3366
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHH
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~ 122 (761)
|.|.. ..++|+|.|+|++|+++|+.+|..
T Consensus 72 f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 66644 358999999999999999999963
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.45 E-value=3.3e-13 Score=124.43 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=62.2
Q ss_pred EEEeeeeeecCC----CCCCcEEEEEEEeCCe-------EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----c
Q 004320 21 KSGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----R 84 (761)
Q Consensus 21 KeGyL~l~KKG~----~~k~WKKRWfVL~~~~-------L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-----~ 84 (761)
.+| |+.|+|. ..++|++|||||+++. |.||++..+..| .+.|+|..+..+.. .
T Consensus 1 ~eG--wL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~---------~g~I~L~~~~~v~~~~~~~~ 69 (108)
T cd01266 1 LEG--WLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKL---------EFVIDLESCSQVDPGLLCTA 69 (108)
T ss_pred Cce--eeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCcc---------ceEEECCccEEEcccccccc
Confidence 379 5557776 3459999999999876 599999877653 34455555433211 1
Q ss_pred cC--CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 85 ED--KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 85 ~~--kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
.. ..+.|.+.. ..|+|+|.|+|++|+++||.+|+++
T Consensus 70 ~~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 70 GNCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred cCcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 11 223455543 3799999999999999999999864
No 71
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.44 E-value=5.7e-13 Score=117.38 Aligned_cols=91 Identities=27% Similarity=0.433 Sum_probs=65.0
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCC
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~g 100 (761)
++|||+ |++...+.|++|||+|+++.|+||+++...... +.+.|.|..+. +.....+.++|.|.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~-------~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGK-------PRGTILLSGAV-ISEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCCCC-------ceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence 479555 777677899999999999999999998765101 23334444432 222233356666653 356
Q ss_pred ceEEEEecChHHHHHHHHHHHHH
Q 004320 101 RAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 101 rty~LqAeSeeE~~eWI~AL~~a 123 (761)
++|+|+|+|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 72
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.39 E-value=1.4e-12 Score=115.60 Aligned_cols=92 Identities=21% Similarity=0.456 Sum_probs=62.3
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC
Q 004320 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (761)
Q Consensus 21 KeGyL~l~KKG~~-~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~ 99 (761)
|+|||+ |++.. .+.|++|||+|+++.|+||++....... ....+.+..+.+..... ...++++|.|...
T Consensus 1 k~G~L~--kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~--~~~~i~l~~~~v~~~~~---~~~~~~~f~i~~~--- 70 (94)
T cd01250 1 KQGYLY--KRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDNA--HVKEIDLRRCTVRHNGK---QPDRRFCFEVISP--- 70 (94)
T ss_pred CcceEE--EECCCcCCCceEEEEEEeCCeEEEEcCCcccccc--cceEEeccceEEecCcc---ccCCceEEEEEcC---
Confidence 589666 55433 6889999999999999999998753111 11223333333322111 1125677777642
Q ss_pred CceEEEEecChHHHHHHHHHHHH
Q 004320 100 GRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 100 grty~LqAeSeeE~~eWI~AL~~ 122 (761)
.++|+|+|+|.+++.+|+.||+.
T Consensus 71 ~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CcEEEEECCCHHHHHHHHHHHhc
Confidence 49999999999999999999975
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.38 E-value=1.8e-12 Score=117.50 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC----CcceEEEEecCCCCceEEEEecC
Q 004320 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLTVLFPDGRDGRAFTLKAET 109 (761)
Q Consensus 34 ~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~----kk~~Fvit~~~~~grty~LqAeS 109 (761)
.++||+|||+|+++.|+||+++.. . +.+.|+|..+..+....+ ..++|.|.. +.++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt---~~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVC---EDDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEe---CCCeEEEECCC
Confidence 578999999999999999997653 2 455677776655433222 224555533 26899999999
Q ss_pred hHHHHHHHHHHHHH
Q 004320 110 SEDLYEWKTALELA 123 (761)
Q Consensus 110 eeE~~eWI~AL~~a 123 (761)
+.|+++||.||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 74
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=2.8e-12 Score=116.08 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=65.1
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEeC----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCcceEE
Q 004320 21 KSGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTV 92 (761)
Q Consensus 21 KeGyL~l~KKG~~-~k~WKKRWfVL~~----~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~---~kk~~Fv 92 (761)
+.||| .|+|+. .|.||+|||+|.+ +.|+||++..++. +++.|++..+....+.+ .+++||.
T Consensus 1 ~~G~l--~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~~V~~v~ds~~~r~~cFe 69 (98)
T cd01245 1 KKGNL--LKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDAYLYPVHDSLFGRPNCFQ 69 (98)
T ss_pred CCCcc--ccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeeccccEEEEccccccCCCeEEE
Confidence 35854 488877 9999999999987 8999999998876 34445555542211112 4568898
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHH
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~ 122 (761)
+.... .+.+|+++|++ +|+++||.+|+.
T Consensus 70 l~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 70 IVERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 86521 12689999999 999999999974
No 75
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.33 E-value=5.6e-12 Score=118.49 Aligned_cols=97 Identities=23% Similarity=0.289 Sum_probs=66.8
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee------ccCCcceEEE
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~------~~~kk~~Fvi 93 (761)
...|||.+....++.++|++|||||+|+.|+||+.+.+.. ... +++.|+|..+..... ...+++.|.+
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~~-----Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RKG-----PTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cCC-----ceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 4579888766666789999999999999999999877632 111 455566666554322 2335556666
Q ss_pred EecCCC----------------Cc-eEEEEecChHHHHHHHHHHHH
Q 004320 94 FPDGRD----------------GR-AFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 94 t~~~~~----------------gr-ty~LqAeSeeE~~eWI~AL~~ 122 (761)
...... .+ -|+|.|+|.+|+++|+.||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 321111 12 267999999999999999975
No 76
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.30 E-value=1.9e-11 Score=108.38 Aligned_cols=101 Identities=23% Similarity=0.420 Sum_probs=71.1
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee--eccCCcceEEEEec
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~--~~~~kk~~Fvit~~ 96 (761)
++++|||+ +++...+.|++|||+|.++.|+||++..... ...+...+++.++.+....... .....+++|.+...
T Consensus 1 ~~~~G~L~--~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLL--KKSSSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEE--EEESSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEE--EECCCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 58999776 5556678999999999999999999987411 1122334455555444322210 11245577877663
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 97 ~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
.+.+|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 34699999999999999999999886
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.28 E-value=1.4e-11 Score=112.32 Aligned_cols=94 Identities=28% Similarity=0.398 Sum_probs=61.5
Q ss_pred EEeeeeeec------CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEEE
Q 004320 22 SGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVL 93 (761)
Q Consensus 22 eGyL~l~KK------G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~--~~~kk~~Fvi 93 (761)
+|+|..+.- ....+.|++|||+|+++.|+||+++........+.+ .|++..+..... ...+++.|.+
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l 76 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRL 76 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEE
Confidence 677764321 223678999999999999999998764321211111 233332111111 1234566776
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHH
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~ 122 (761)
.. +++++|+|+|++++++.+|+.+|+.
T Consensus 77 ~~--~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 77 RL--PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred Ee--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 53 4689999999999999999999974
No 78
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.26 E-value=3.4e-11 Score=112.59 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=67.3
Q ss_pred EEEeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeec-cCCcce
Q 004320 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVR-EDKKLL 90 (761)
Q Consensus 21 KeGyL~l~-------KKG-~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~s-v~~~-~~kk~~ 90 (761)
|+|+|..+ ||. .+.+.|+++||||+|+.|++|||+...... ....-....|.|..+.. +... ..+++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~--~~~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS--LSETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc--cccccccceEEeccceeEeeccccCCCcE
Confidence 78988754 111 125789999999999999999998642211 00000123355665542 2222 334445
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
|.|. ..+|+.|+|||.+.+||+.||.+|+.+++
T Consensus 80 F~L~--~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRLR--TADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEE--cCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5554 46789999999999999999999998875
No 79
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.23 E-value=2.2e-11 Score=131.67 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=140.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC------------------------------------
Q 004320 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK------------------------------------ 222 (761)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~------------------------------------ 222 (761)
..|.++...+.+.+.+|+.++||+|..+..+..++++..-..|+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 46899999999999999999999999887765555544333221
Q ss_pred -----ccCCCCCCccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 004320 223 -----TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297 (761)
Q Consensus 223 -----~~~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL 297 (761)
.....++.|.+||+|||.|||+||++|++.++...|..++.........+.++.++ ..||.+||.++.||+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~ll-k~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLL-KILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHH-HhccccchHHHHHHHHHH
Confidence 00112457899999999999999999999999999999998887778888888855 699999999999999999
Q ss_pred HHHHhccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCccc
Q 004320 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (761)
Q Consensus 298 ~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (761)
-.|....-.|||++.||+|+..|++--+ ..++..|..|+..||++.-.
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHHHHH--------------------------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999988876532 35677788899999998776
Q ss_pred cccC
Q 004320 378 HRCS 381 (761)
Q Consensus 378 ~~~s 381 (761)
..|.
T Consensus 277 ~~~~ 280 (514)
T KOG4370|consen 277 MVCF 280 (514)
T ss_pred eeee
Confidence 6554
No 80
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.5e-11 Score=124.19 Aligned_cols=101 Identities=28% Similarity=0.513 Sum_probs=74.7
Q ss_pred EEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-c
Q 004320 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D 96 (761)
Q Consensus 19 v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~-~ 96 (761)
..++|||+ |.|+ +.++||+|||||++++||||.--.+..|.| .++|..+.+..+.. ..+.+||.+.. .
T Consensus 260 pdREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~Ved----P~kP~cfEly~ps 329 (395)
T KOG0930|consen 260 PDREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREVED----PKKPNCFELYIPS 329 (395)
T ss_pred ccccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeeccC----CCCCCeEEEecCC
Confidence 45789766 5554 789999999999999999998887777665 23455555544322 45668887743 2
Q ss_pred C-----------CCCc-------eEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 97 G-----------RDGR-------AFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 97 ~-----------~~gr-------ty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
. .+|| +|-++|.+.+|+++||.+|+.+|...|-
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 2 1233 6999999999999999999999987664
No 81
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.16 E-value=1.1e-10 Score=108.48 Aligned_cols=97 Identities=32% Similarity=0.524 Sum_probs=49.2
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEe-CCeEEEEcCCCCCCC-----------CCCceeee--eeCcEEcCCCcceeecc
Q 004320 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALP-----------QRGGEVNL--TLGGIDLNNSGSVVVRE 85 (761)
Q Consensus 21 KeGyL~l~KKG~~-~k~WKKRWfVL~-~~~L~yYKd~~~s~p-----------~~~~~~~i--~L~~I~L~~~~sv~~~~ 85 (761)
|+|||| |++.. .+.|++|||+|. ++.|.|||.+..... ...+.... ....+............
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689666 88776 899999999999 999999999322110 00011110 00000000000000001
Q ss_pred CCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 86 ~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
..+.+.+.++ .++|+|.|+|.+|+.+|+.||+.|
T Consensus 79 ~~~~~~i~T~----~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP----TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S----S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC----CcEEEEEECCHHHHHHHHHHHHhC
Confidence 1112223333 689999999999999999999865
No 82
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.12 E-value=2.8e-10 Score=103.71 Aligned_cols=90 Identities=22% Similarity=0.412 Sum_probs=66.7
Q ss_pred ecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE-ecCCCCceEEEEe
Q 004320 29 SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDGRDGRAFTLKA 107 (761)
Q Consensus 29 KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit-~~~~~grty~LqA 107 (761)
-+...++.||+|||+++++.|+|||++.+.. +.+.+.+.+.+|.+.....+ ..+++++.+. +...+.++|+|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence 3445578899999999999999999987654 44555666777777664332 2345555553 3334458999999
Q ss_pred cChHHHHHHHHHHHHH
Q 004320 108 ETSEDLYEWKTALELA 123 (761)
Q Consensus 108 eSeeE~~eWI~AL~~a 123 (761)
+|++++.+||.|++.|
T Consensus 87 dsEeqya~Wmaa~rla 102 (106)
T cd01237 87 DNEKQYAKWMAACRLA 102 (106)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999976
No 83
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.09 E-value=1.7e-10 Score=134.75 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=130.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccc-cCCCHHHHHHHHHHHhcCCccC--CCCCCccchHHhHHHhhhcCCCC-CCChhh
Q 004320 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (761)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR-~sg~~~~v~~L~~~ld~g~~~~--~~~~D~h~vAslLK~fLReLPeP-Llp~~l 254 (761)
.||.++..|+.+++.+|+..+|||| +++....+..++.++.+|.... ..+.+... |.++|.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4899999999999999999999999 8899999999999999984221 22344455 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCC
Q 004320 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (761)
Q Consensus 255 y~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (761)
|..|+.+....+.-.++..++.++. .+|..+..++.++..|+.+.+.+++.|.|++.|+|+||||.++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 9999999888777777788888665 8999999999999999999999999999999999999999997655
No 84
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=8.4e-10 Score=100.70 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=68.1
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC-CCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p-~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~ 97 (761)
.+|+| |+.|.+...+.|+.|||.|-++.|.|++....... .....-.+.+.++.+.... ....++.|.|...
T Consensus 2 ~ikeG--~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEG--SVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred cccce--EEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 47999 66688888889999999999999999986432110 0000112334444433211 1234577887653
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.++|+++|+|++|+++||.+|+.+|.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 59999999999999999999999985
No 85
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.05 E-value=9.1e-10 Score=103.78 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=56.0
Q ss_pred CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------------cCCcceEEEEecCCCCc
Q 004320 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (761)
Q Consensus 36 ~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~--------------~~kk~~Fvit~~~~~gr 101 (761)
.|++|||+|+++.|.||+++.++. +++.|.++....+... ..+++.|.|.. ..|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence 699999999999999999987755 3333444333332211 23456666654 479
Q ss_pred eEEEEecChHHHHHHHHHHHHH
Q 004320 102 AFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 102 ty~LqAeSeeE~~eWI~AL~~a 123 (761)
+|.|.|+|+.++.+|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 86
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.02 E-value=8.3e-10 Score=103.72 Aligned_cols=103 Identities=24% Similarity=0.395 Sum_probs=58.9
Q ss_pred EEEEeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-----CceeeeeeCcEEcCCCcceeec--
Q 004320 20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVR-- 84 (761)
Q Consensus 20 ~KeGyL~l~-------KK-G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~-----~~~~~i~L~~I~L~~~~sv~~~-- 84 (761)
.|+|||..+ || +.+.++|+..|+||+|+.|++||+.....+.. ..+...+...|.|..+......
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 479988754 11 12467899999999999999999943211110 0111223444677665543332
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
..+++.|.++ ..+|..|+|||.|.++|.+||.+|..+.
T Consensus 81 ~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 2345666665 4579999999999999999999998763
No 87
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.99 E-value=2.3e-09 Score=95.16 Aligned_cols=86 Identities=27% Similarity=0.488 Sum_probs=59.0
Q ss_pred EeeeeeecCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCC
Q 004320 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (761)
Q Consensus 23 GyL~l~KKG~~~k~WKKRWfVL--~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~g 100 (761)
|||.+ |++...+.|+||||+| ..+.|.||+++.+.. .-+.|+|..+ .+.... +...+.|.. ..
T Consensus 1 G~llK-krr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a-~is~~~-~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLK-KRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLA-VISANK-KSRRIDIDS---GD 65 (89)
T ss_pred Cccee-eccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccce-EEEecC-CCCEEEEEc---CC
Confidence 65553 3344578999999999 889999999876542 1233555443 222222 333344432 36
Q ss_pred ceEEEEecChHHHHHHHHHHHHH
Q 004320 101 RAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 101 rty~LqAeSeeE~~eWI~AL~~a 123 (761)
.+|+|.|.++.+.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999865
No 88
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.97 E-value=6.7e-09 Score=90.33 Aligned_cols=97 Identities=33% Similarity=0.512 Sum_probs=66.0
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEE
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~----~kk~~Fvit 94 (761)
++++|||+....+ ....|++|||+|.++.|.||++.....+ .. ....|.|..+....... ..+++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~-----~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YK-----PKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CC-----CceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689977644432 4678999999999999999998765321 11 22234444432111111 245677776
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
.. ++.+|+|+|+|..++..|+.+|+.++
T Consensus 74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TA--DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 53 34599999999999999999999875
No 89
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.81 E-value=2.6e-08 Score=90.65 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=61.8
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCC--eEEE--EcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCcceEEEEe
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLVF--FKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP 95 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~~--~L~y--YKd~~~s~p~~~~~~~i~L~~I~L~~~~s-v~~~~~kk~~Fvit~ 95 (761)
|+||||++.++.....|.|+||...+. .+.+ +..... .+.++. +. ....+.|..|.. .....+++|||.|+.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~-~~~~g~-v~-~~e~~~l~sc~~r~~~~~dRRFCFei~~ 77 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTK-TDMKGA-VA-QDETLTLKSCSRRKTESIDKRFCFDVEV 77 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccc-cccCcc-cc-cceEEeeeeccccccCCccceeeEeeee
Confidence 589999998877777999999998885 3322 222110 111111 10 111133333222 123357899999977
Q ss_pred cCCCCceEEEEecChHHHHHHHHHHH
Q 004320 96 DGRDGRAFTLKAETSEDLYEWKTALE 121 (761)
Q Consensus 96 ~~~~grty~LqAeSeeE~~eWI~AL~ 121 (761)
..++ .+++|||+++.++..||.|+.
T Consensus 78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 5444 479999999999999999985
No 90
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.79 E-value=2.8e-08 Score=88.55 Aligned_cols=99 Identities=33% Similarity=0.462 Sum_probs=72.8
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-cC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~-~~ 97 (761)
|++.|||-+..-|.....=|.|||||+..+|+||++..+..|++ .++|.++.+.....- -..+++||.+.- ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~ky----ilpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKY----MLPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccc----eeeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 57899777665555445569999999999999999998776544 567777777764431 135668887753 22
Q ss_pred C----CCceEEEEecChHHHHHHHHHHHHH
Q 004320 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 98 ~----~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
+ +-++.-|.|+|.++++.|.+.+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 1 3367889999999999999887654
No 91
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.71 E-value=4.4e-08 Score=84.31 Aligned_cols=93 Identities=31% Similarity=0.538 Sum_probs=61.1
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--CcceEEEEecCC
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~--kk~~Fvit~~~~ 98 (761)
++|||+....+. ...|++|||+|.++.|.+|+...... ... +.+.+.|........... ..++|.|...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468666333332 37899999999999999998876531 011 222344444221111122 3567777653
Q ss_pred CCceEEEEecChHHHHHHHHHHHH
Q 004320 99 DGRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 99 ~grty~LqAeSeeE~~eWI~AL~~ 122 (761)
+++.|+|+|+|..++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 348999999999999999999975
No 92
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.69 E-value=1.2e-07 Score=82.33 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=62.7
Q ss_pred EEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC
Q 004320 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (761)
Q Consensus 22 eGyL~l~KKG~--~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~ 99 (761)
+|||.....+. ....|++|||+|.++.|.||+.+....+.. ..+++..+.+..... .....++|.+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 57555333332 247899999999999999999987654221 123333333222111 0124577777653213
Q ss_pred CceEEEEecChHHHHHHHHHHHHH
Q 004320 100 GRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 100 grty~LqAeSeeE~~eWI~AL~~a 123 (761)
.+.|+|+|+|.+++..|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999853
No 93
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.69 E-value=1.6e-08 Score=90.83 Aligned_cols=98 Identities=19% Similarity=0.374 Sum_probs=67.8
Q ss_pred EEEEeeeeeecCC-CCCCcEEEEEEEeCCe-----EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccC
Q 004320 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (761)
Q Consensus 20 ~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~-----L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-------~~~ 86 (761)
.++|||| |.|+ .+|.||||||+|.+-+ +.-|+.++. .+...+.|.|..++-+..... ...
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899666 7777 7999999999999853 334444322 233345778888777654321 123
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.++||...- -|-+..|..+++.|+.-||+|+=.|-.++
T Consensus 76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 455554432 37789999999999999999998886543
No 94
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.57 E-value=6.9e-08 Score=102.83 Aligned_cols=108 Identities=17% Similarity=0.309 Sum_probs=79.7
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeC-CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~-~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
.....|+|+| |+.|+|...++|+.|||+|.. +.|.-|+.++....+. + .+|..+.+..|........+...|+
T Consensus 10 ~~~~~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~-p---~pLNnF~v~~cq~m~~erPrPntFi 83 (516)
T KOG0690|consen 10 MSQEDVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT-P---EPLNNFMVRDCQTMKTERPRPNTFI 83 (516)
T ss_pred cchhhhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCC-c---ccccchhhhhhhhhhccCCCCceEE
Confidence 4556799999 566999999999999999976 6899998876543221 1 3566677777666555556667777
Q ss_pred EE-ecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 93 LF-PDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 93 it-~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
|. .....-...+|++++.+++++|+.||+.+....
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 63 333334567899999999999999999887644
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.55 E-value=5.2e-08 Score=110.98 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=140.0
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHH-----HHHHHhcCCccCCCCCCccc
Q 004320 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR-----RVQEYEQGKTEFSADEDAHV 233 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~-----L~~~ld~g~~~~~~~~D~h~ 233 (761)
......-||+||+..|.+++.+|..+......|...+..++++||..-...-+.+ ..+....|.....+...+|.
T Consensus 410 ~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~t 489 (741)
T KOG4724|consen 410 SELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHT 489 (741)
T ss_pred hhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchH
Confidence 3445678999999999999999999988888889999999999998444333222 22233336666666779999
Q ss_pred hHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHHhhCChhHHHHHHHHHHHHHHHHhcccc
Q 004320 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAHE 306 (761)
Q Consensus 234 vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~-------lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~ 306 (761)
+++++|.|+|.+|..++..++..+++++.....++++.++|+. .+..+.|..+..+....+.-.+.+..++..
T Consensus 490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence 9999999999999999999999999999998888889999997 133588989888888888888889999999
Q ss_pred CCCCccchhhhccccccCCC
Q 004320 307 NRMTPSAVAACMAPLLLRPL 326 (761)
Q Consensus 307 NkMta~NLAivfaP~Llr~~ 326 (761)
+.|+..|++.|..|+++...
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 99999999999999998754
No 96
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.48 E-value=1.7e-06 Score=80.36 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=72.2
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCce--eeeee--CcEEcCCCcc--e--eeccCCcceE
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE--VNLTL--GGIDLNNSGS--V--VVREDKKLLT 91 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~--~~i~L--~~I~L~~~~s--v--~~~~~kk~~F 91 (761)
..+|||.+.+.++..+.|+++|+||.+..|++|..+.+...+.... ..+++ +.+.+...+. + +...+-+++|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 4689888888877778999999999999999998776543332233 33444 3355544333 1 1123334667
Q ss_pred EEEec----CCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 92 VLFPD----GRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 92 vit~~----~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
.|+.. ...+.+.||-|+++.|...|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 77652 224578999999999999999999865
No 97
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.46 E-value=1.6e-06 Score=79.06 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=59.5
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~ 98 (761)
.+|+|+|. |.+. ...|+|+||.+.+..||+.+..... .+......+++.++.+..... ....+++|.|..
T Consensus 2 ~ikEG~L~--K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~--- 71 (99)
T cd01220 2 FIRQGCLL--KLSK-KGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFG--- 71 (99)
T ss_pred eeeEEEEE--EEeC-CCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccC---CcCCceeEEEEc---
Confidence 58999665 5543 2467777776666555555432111 000112234455554443211 113457888874
Q ss_pred CCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 99 ~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
..+.|.|+|.|++|+.+|+.+|+.+|.
T Consensus 72 ~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 72 GQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999985
No 98
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.42 E-value=9.4e-08 Score=111.88 Aligned_cols=95 Identities=25% Similarity=0.480 Sum_probs=73.9
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee---c-cCCcc
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R-EDKKL 89 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~--~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~---~-~~kk~ 89 (761)
..+-+.+|||| |+|...|.||.|||||... .|+||.+-.+++|+| .|+|....++.. + .+.|-
T Consensus 1631 teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG---------~IdLaevesv~~~~~k~vdekg 1699 (1732)
T KOG1090|consen 1631 TENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKG---------CIDLAEVESVALIGPKTVDEKG 1699 (1732)
T ss_pred ccccCcccchh--hcchhhcccccceeEecCCccceeeecccccccccc---------hhhhhhhhhhcccCccccCccc
Confidence 44566799887 9999999999999999884 999999988887554 466665555433 1 23445
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
+|.+.. ..|+|.|+|.+...+.+|+..|+..+
T Consensus 1700 ffdlkt---t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1700 FFDLKT---TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeeeeh---hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 666644 37999999999999999999999876
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.42 E-value=5.7e-07 Score=82.46 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=60.5
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeeccCCcceEEEEecC-C
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG-R 98 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~-~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~-~ 98 (761)
.+|+||++.-| .++|||+||+|++.-|+|+-..+...+.- ..-..+.-..|-......-.-..+..++|++.+.. .
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q 79 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQ 79 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccC
Confidence 47999977666 48999999999999999885544332211 00000000001111001111122344788885421 1
Q ss_pred C---CceEEEEecChHHHHHHHHHHHHHH
Q 004320 99 D---GRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 99 ~---grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
. .-..+|+|+++..+..|+.|||-+-
T Consensus 80 ~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 80 SKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 1 2367899999999999999999553
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.29 E-value=8.8e-06 Score=74.64 Aligned_cols=103 Identities=13% Similarity=0.275 Sum_probs=68.9
Q ss_pred EEEeeeeeecCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC-cEEcCCCcc--e--eeccCCcceEEE
Q 004320 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--V--VVREDKKLLTVL 93 (761)
Q Consensus 21 KeGyL~l~KKG~~--~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~-~I~L~~~~s--v--~~~~~kk~~Fvi 93 (761)
.+|||-+.+.++. .+.|+++|+||.+..|++|..+.+..... +...+.++ .+++...+. + +...+-+++|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 5897766677554 46899999999999999998876543221 22223322 233333333 1 112334467777
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+.. ..+++.+|-|+++.|.+.|+.+|.+-|.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 653 3469999999999999999999998763
No 101
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.19 E-value=1.9e-06 Score=101.51 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=76.0
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-------CCcc
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------DKKL 89 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~-------~kk~ 89 (761)
-.|.-.|||++..-+.+...|+||||+|.|+.+.|+|.+.+.+.+. +++.|+|+.|+.-.... ..+.
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~------Pig~IDLt~CTsq~ie~a~rdicar~nt 1061 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKV------PIGQIDLTKCTSQSIEEARRDICARPNT 1061 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccC------cceeeehhhhhccccccchhhhccCCce
Confidence 3477789999888877788899999999999999999988876333 67888998888732221 1223
Q ss_pred eEEEEec--CCC-------Cc-eEEEEecChHHHHHHHHHHHHHHh
Q 004320 90 LTVLFPD--GRD-------GR-AFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 90 ~Fvit~~--~~~-------gr-ty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
|++.+.. ..+ .| ...|.|+|.++++.|+.+|..++.
T Consensus 1062 Fhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1062 FHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 3333210 000 12 578999999999999999999875
No 102
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.17 E-value=1.4e-05 Score=73.48 Aligned_cols=91 Identities=24% Similarity=0.287 Sum_probs=59.2
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~-~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
.+.++++|++. |+++.. +++|||+|+++ .|+|+...... .-|.|.++....+..... +.|++.+
T Consensus 10 ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~~-~~F~I~t 74 (104)
T PF14593_consen 10 GELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKSF-KTFFIHT 74 (104)
T ss_dssp T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECSS-SEEEEEE
T ss_pred CCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEccC-CEEEEEC
Confidence 67899999665 544332 99999999998 66666443221 235588887766655433 3556666
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
+ +|+|+|.. ....+..|+.+|+.++.+
T Consensus 75 p----~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P----KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T----TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred C----CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 5 89999987 566789999999998753
No 103
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.16 E-value=1.1e-05 Score=90.65 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCcc---ccCCCHHHHHHHHHHH-hcCCcc----------CCCCCCccchHHhHHHhhhcCC
Q 004320 181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP 246 (761)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIF---R~sg~~~~v~~L~~~l-d~g~~~----------~~~~~D~h~vAslLK~fLReLP 246 (761)
=.+|+.|.+.|..+|+++++|| |-.-+...++.+...| ..+... .....++|+++++||..+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478889999999999999998 6667788887777654 443311 1234699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCC
Q 004320 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (761)
Q Consensus 247 ePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP-~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~ 325 (761)
..+++++.|..|...-+..+ -...++..+|-..|| +.+..++..++.+|..|+.|+..|+|+..-|+-.+|+-.|-.
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999977644332 234556665655674 667889999999999999999999999999999999999987
Q ss_pred CCC
Q 004320 326 LLA 328 (761)
Q Consensus 326 ~~~ 328 (761)
...
T Consensus 167 ~~~ 169 (420)
T PF08101_consen 167 PDF 169 (420)
T ss_pred CCc
Confidence 643
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.10 E-value=7.2e-06 Score=94.57 Aligned_cols=114 Identities=27% Similarity=0.397 Sum_probs=76.2
Q ss_pred CCcEEEEEeeeeeecCCC---CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec----cC-C
Q 004320 16 SNTVFKSGPLFISSKGIG---WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----ED-K 87 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~---~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~----~~-k 87 (761)
...|.|+|.+..+.+|.+ .+.+|||||.|+...|.|.|++... +...|.|.++..|..- .+ +
T Consensus 562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~k 631 (800)
T KOG2059|consen 562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMK 631 (800)
T ss_pred CCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCC
Confidence 345666664443333322 4678999999999999999997654 3445666665554321 12 3
Q ss_pred cceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcchhhccCCCcccCCC
Q 004320 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (761)
Q Consensus 88 k~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a~~~g~~~if~~~~ 144 (761)
+.+.||.. .|+.||||.+..|..+|+++|+++...+++. ...-|.|.|+.+.
T Consensus 632 nv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~ 683 (800)
T KOG2059|consen 632 NVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDS 683 (800)
T ss_pred ceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCc
Confidence 34445554 3899999999999999999999987643321 1234667777764
No 105
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.75 E-value=5.4e-05 Score=85.02 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=63.3
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc--EEcCCCcceeeccCCcceEEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--IDLNNSGSVVVREDKKLLTVL 93 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~--I~L~~~~sv~~~~~kk~~Fvi 93 (761)
.+...++||||++..| +|.|||.||||+...|||+-..+...|+...-+ ..+++ |.......-.-+....++|.|
T Consensus 314 ~~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l-~~~~~snVYt~i~~rKkyksPTd~~f~~ 390 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCL-ADLHSSNVYTGIGGRKKYKSPTDYGFCI 390 (622)
T ss_pred CCCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhHHH-HhcccCceEEeecchhccCCCCCceEEe
Confidence 3446789999976655 589999999999999999966554443321000 00111 111111110011223356666
Q ss_pred EecCC-CC--ceEEEEecChHHHHHHHHHHHHHHh
Q 004320 94 FPDGR-DG--RAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 94 t~~~~-~g--rty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+... +. -.-+|||+++.-+..|+.||+-+-.
T Consensus 391 K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 391 KPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred eeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 54221 22 2468999999999999999986543
No 106
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.66 E-value=0.00044 Score=63.66 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=63.8
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEec
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~ 96 (761)
...+++|-|. |.. ++.-+.|||.|-.+.|.|-+-..... .....-.+++.++.+.+... ....+..|.|..
T Consensus 2 R~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~~-~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~- 72 (104)
T cd01218 2 RVLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISKK-KYNKQHILPLEGVQVESIED---DGIERNGWIIKT- 72 (104)
T ss_pred CEEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCCc-eeeEeeEEEccceEEEecCC---cccccceEEEec-
Confidence 3578899665 433 35578899999999999964311100 01111234566665544221 112245565544
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 97 GRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 97 ~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
..+.|.++|+|++|..+|+.+|..+|..
T Consensus 73 --~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 73 --PTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred --CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999999999964
No 107
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=2.2e-05 Score=88.39 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=68.4
Q ss_pred CCCCcEEEEEeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC-cEEcCCCcceeec
Q 004320 14 GASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGSVVVR 84 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~-------KK-G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~-~I~L~~~~sv~~~ 84 (761)
-.+-.+.|.|+|-.+ || -.+++.||..|.+|+|..||+-|++-......... .+. -|.+.........
T Consensus 501 dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~---~lknavsvHHALAt~At 577 (774)
T KOG0932|consen 501 DPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSES---DLKNAVSVHHALATPAT 577 (774)
T ss_pred CCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhh---hhhhhhhhhhhhcCCCc
Confidence 445568899966533 22 12367899999999999999999764321100000 011 1233222211112
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+..|..||+..++.+.|+|+|||.+.+||..||..|.-+.+
T Consensus 578 dY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 578 DYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred ccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 33333455555667899999999999999999999987654
No 108
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.59 E-value=0.00024 Score=83.67 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=74.6
Q ss_pred CcEEEEEeeeeeec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceE
Q 004320 17 NTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLT 91 (761)
Q Consensus 17 ~~v~KeGyL~l~KK-G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~----~kk~~F 91 (761)
..+.++||||.-.. ..+...-++|||||.++.+.|||.++... .++++...+...+-|.... ..+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 35779999996544 33455679999999999999999976533 2355555555555443332 233566
Q ss_pred EEEecCC--CCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 92 VLFPDGR--DGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 92 vit~~~~--~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
++....+ ..+...|.|-|.+|+..|+.||+.|+.++
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 7665433 34678999999999999999999999865
No 109
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.57 E-value=0.00062 Score=63.47 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=66.8
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC-CC--Ccee----eeeeCcEEcCCCcceeeccCCcce
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-QR--GGEV----NLTLGGIDLNNSGSVVVREDKKLL 90 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p-~~--~~~~----~i~L~~I~L~~~~sv~~~~~kk~~ 90 (761)
..+++|-| .|-+...+.++.|+|-|-++.|.|.|....... .| +..+ .+++..+.|..... ...-++.
T Consensus 3 elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kna 77 (112)
T cd01261 3 EFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNA 77 (112)
T ss_pred cccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCce
Confidence 46789944 455544567899999999999999986543211 11 1121 13444455543221 1122456
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
|.|... +++.|.|+|.|+++..+||.+|..++.+
T Consensus 78 F~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 78 FEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 776542 3678999999999999999999998864
No 110
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.53 E-value=0.0003 Score=65.20 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=59.3
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccCCcceEE
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLLTV 92 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-------~~~kk~~Fv 92 (761)
+|+||+- --...-+.|||+|++|+...|.+|+++...+ ..+.|.|.....|.. .....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4789663 2222346799999999999999999987655 223344444333321 124558998
Q ss_pred EEecCCCCceEEEEecC--------------------hHHHHHHHHHHHHH
Q 004320 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (761)
Q Consensus 93 it~~~~~grty~LqAeS--------------------eeE~~eWI~AL~~a 123 (761)
|.+ ...+||.+.+. ....+-|-.||+.|
T Consensus 70 i~T---~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRT---TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEe---cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 876 36899997752 23458888888753
No 111
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.49 E-value=0.00026 Score=81.55 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=62.4
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcC-CCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKN-DPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd-~~~s~p~~~~~~~i~L~~I~L~~~~sv~~--~~~kk~~Fv 92 (761)
...+.+.|||+ +.+... .|++|||.+.++.+..... .+........ .+...++..+..+.. ...+.++|.
T Consensus 374 ~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 45678899665 666544 4999999999876655433 2221101001 111123333333211 123456777
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+.. +.++.++|.|++++++++|+.+|+.++.
T Consensus 447 i~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LWF--NNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEe--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 743 4588999999999999999999999874
No 112
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.33 E-value=0.00018 Score=86.90 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=71.6
Q ss_pred CcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 004320 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~ 95 (761)
..+...|||| ++.. ..+.|.||||-..++.+.|+..-..... .+...++.|.+..+.. ..++++||.|+.
T Consensus 272 ~~~~~~~~l~--~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS 342 (785)
T KOG0521|consen 272 LGYRMEGYLR--KKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS 342 (785)
T ss_pred chhhhhhhhh--hhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec
Confidence 3455667555 4432 4789999999999999998876544321 2334555555554332 236889998875
Q ss_pred cCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 96 ~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
..++|.|||+++.+..+||.+|++.+..+
T Consensus 343 ---~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 ---PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred ---CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999754
No 113
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.33 E-value=0.00063 Score=62.91 Aligned_cols=86 Identities=17% Similarity=0.328 Sum_probs=56.2
Q ss_pred CCCCcEEEEEEEeCCeEEEEcCCCCCCCC-CCceeeeeeC-----cEEcCCCcceeeccCCcceEEEEecCCCC-ceEEE
Q 004320 33 GWKSWKKRWFILTRTSLVFFKNDPSALPQ-RGGEVNLTLG-----GIDLNNSGSVVVREDKKLLTVLFPDGRDG-RAFTL 105 (761)
Q Consensus 33 ~~k~WKKRWfVL~~~~L~yYKd~~~s~p~-~~~~~~i~L~-----~I~L~~~~sv~~~~~kk~~Fvit~~~~~g-rty~L 105 (761)
..+.|+.+|++|++..|++|+..+-.... ..+..+.++. .+........ ...+.+||.+... .+ ..++|
T Consensus 15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~--~~~~~~~F~irtg--~~vesh~f 90 (108)
T cd01258 15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL--NDQRDNCFLIRTG--TQVENHYL 90 (108)
T ss_pred cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc--CCCCceEEEEEcC--CceeeEEE
Confidence 46899999999999999999987653210 1111122222 1222211110 1245578888653 34 78999
Q ss_pred EecChHHHHHHHHHHHH
Q 004320 106 KAETSEDLYEWKTALEL 122 (761)
Q Consensus 106 qAeSeeE~~eWI~AL~~ 122 (761)
..++..|+..|..||..
T Consensus 91 sVEt~~dL~~W~raiv~ 107 (108)
T cd01258 91 RVETHRDLASWERALVR 107 (108)
T ss_pred EecCHHHHHHHHHHHhc
Confidence 99999999999999863
No 114
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.86 E-value=0.0066 Score=54.12 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=56.4
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC-CcceeeccCCcceEEEEecC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~-~~sv~~~~~kk~~Fvit~~~ 97 (761)
+++.|.++ |+.+. .+++|=++|++.--.+|-|..... .-+.|.++. +..+.... .+.|++.++
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~~-~~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVKN-SSHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEec-CccEEEECC--
Confidence 46778444 55432 689999999997555555544322 223466665 33343333 345666666
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
+|+|+|. |......+|+.+|..+.
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 8999995 55689999999998763
No 115
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.78 E-value=0.0008 Score=77.67 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=66.8
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEec
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~ 96 (761)
....|+| |..+.+...+.|+|||||++.+.+.||+.+.+......+. +++...+.. .....-..|-+..
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~-------~d~~s~~~~-~~~~~s~~fqli~- 315 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASK-------IDIRSVTKL-EQQGAAYAFQLIT- 315 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCc-------cccccccee-eccchhHHhhhhh-
Confidence 6788999 6667777789999999999999999999887655333332 233332211 1112222333322
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 97 ~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
...+|+|-++++.-..+|++.|+.+|.
T Consensus 316 --~t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 316 --STDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred --hceeEEEeccChhhhhhhHHHHHHHHH
Confidence 146899999999999999999999886
No 116
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.65 E-value=0.0025 Score=58.40 Aligned_cols=95 Identities=21% Similarity=0.339 Sum_probs=63.5
Q ss_pred cEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEEE
Q 004320 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~---~~~~kk~~Fvi 93 (761)
.++..| |+.|-|+ +...|++|||-|-++.|-+|-...... .++ +.+.....|. ..-....|-++
T Consensus 2 DcIvhG--yi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~eL------i~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHG--YIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PEL------ITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEee--ehhhhCCHHHHHHHHHHheeCcceeeecccccccC----CcE------EEeehhhhcchhheeeccCceEEE
Confidence 478899 5557654 477899999999999999975443322 222 2222222221 11122245555
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
.. ++++.|++.++++.++.+|..-|+.+...
T Consensus 70 k~--k~~~k~vlt~~d~i~l~qW~~elr~a~r~ 100 (116)
T cd01240 70 KI--RDEKKIVLTNSDEIELKQWKKELRDAHRE 100 (116)
T ss_pred EE--cCCceEEEecCCcHHHHHHHHHHHHHHHH
Confidence 54 35888999999999999999999988753
No 117
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.58 E-value=0.00047 Score=78.54 Aligned_cols=109 Identities=20% Similarity=0.307 Sum_probs=68.6
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
.+.+.-+.||||.-.+. .||.||||||+|-.-+-|-|.-..-...+..+...+.|.|..++.......-...++||.-.
T Consensus 460 kp~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnav 538 (1218)
T KOG3543|consen 460 KPPNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAV 538 (1218)
T ss_pred CCCccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHh
Confidence 35567788999955443 38999999999987543333221111111112234566777776533322223444444332
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
- .|-+..|..+++.++.-|++|+-+|..++
T Consensus 539 k---egdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 539 K---EGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred c---cCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 2 37889999999999999999999998766
No 118
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.48 E-value=0.037 Score=52.47 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=51.6
Q ss_pred CCCcEEEEEEEeC--CeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeecc----CCcceEEEEecCCCCceEEEE
Q 004320 34 WKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLK 106 (761)
Q Consensus 34 ~k~WKKRWfVL~~--~~L~yYKd~~~s~p~~-~~~~~i~L~~I~L~~~~sv~~~~----~kk~~Fvit~~~~~grty~Lq 106 (761)
....++|||.|+. .+|+|+..++...... +..-.+.+..+.--......+.. ...++++|. ..+|+.-|-
T Consensus 27 ~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~---t~~R~L~l~ 103 (123)
T PF12814_consen 27 SEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIV---TPDRSLDLT 103 (123)
T ss_pred CCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEE---cCCeEEEEE
Confidence 3578999999999 4888877554322111 11111222222211111111111 122334433 247999999
Q ss_pred ecChHHHHHHHHHHHHHHh
Q 004320 107 AETSEDLYEWKTALELALA 125 (761)
Q Consensus 107 AeSeeE~~eWI~AL~~aI~ 125 (761)
|++.++.+-|+.+|+..++
T Consensus 104 a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 104 APSRERHEIWFNALRYLLQ 122 (123)
T ss_pred eCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998875
No 119
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.40 E-value=0.0083 Score=69.70 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC-cee------------eeeeCcEEcCCCcce
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG-GEV------------NLTLGGIDLNNSGSV 81 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~-~~~------------~i~L~~I~L~~~~sv 81 (761)
.+...+.+| .+.+.+. ...||+||+.+++...--+....+..|... .+. .+....-++..+..|
T Consensus 369 ~~~~~~~~g--~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (496)
T PTZ00283 369 LGGLTLYEG--IVKKQSS-DLSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPV 445 (496)
T ss_pred cCCceeeee--EEecccC-CcccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccc
Confidence 445678888 4445544 345999999998532211111111111110 000 011111223333333
Q ss_pred eec---cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 82 VVR---EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 82 ~~~---~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
... ...++.|.+. .++|+.|.|+|.+.++++.||.+|+.++.
T Consensus 446 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 446 PSKYTGSNAAHVFAVA--FKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred cHHhhCCCCCcEEEEE--ecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 222 2234555554 35799999999999999999999999985
No 120
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.28 E-value=0.05 Score=49.58 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=59.6
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~ 97 (761)
..+++|.|...+. =+-|++-|-...|.|.|-.++.. .-.-.+.+..+.+.... ....+.|.+....
T Consensus 3 eLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~~-----~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEHL-----PGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecCC-----CCCCcEEEEEecC
Confidence 4578886642222 13488888888898887644311 11112333334443321 1235788887654
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
.+.+.|.|+|.|.++...|+++|+.+|
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 445799999999999999999999886
No 121
>PLN02866 phospholipase D
Probab=96.28 E-value=0.025 Score=69.64 Aligned_cols=87 Identities=21% Similarity=0.362 Sum_probs=55.8
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeee---------CcEEcCCCcceeeccCCcceEEEEecCCCCceEEE
Q 004320 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTL---------GGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTL 105 (761)
Q Consensus 35 k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L---------~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~L 105 (761)
..|.||||||+.+.|.|.++.-+..+.. .+.++. +.+.+.... ......++.|.|+. .+|.+.|
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~--v~lfD~~~~~~~~~~~~~~~~~~~--k~~~~~~~~~~i~~---~~r~l~l 288 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPLD--IIVFDVLPASNGNGEGQISLAKEI--KERNPLRFGFKVTC---GNRSIRL 288 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCceeE--EEEEecccccccCCCcceeecccc--cccCCCcceEEEec---CceEEEE
Confidence 4699999999999999998766544211 111110 011111100 00112345666654 4799999
Q ss_pred EecChHHHHHHHHHHHHHHhcCC
Q 004320 106 KAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 106 qAeSeeE~~eWI~AL~~aI~~aP 128 (761)
.|.+...+.+|+.+|+.+..+.|
T Consensus 289 ~~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 289 RTKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred EECCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999976443
No 122
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.19 E-value=0.0017 Score=56.88 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=57.7
Q ss_pred EEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----c--cC--CcceEEE
Q 004320 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----R--ED--KKLLTVL 93 (761)
Q Consensus 22 eGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~----~--~~--kk~~Fvi 93 (761)
+||||...+|. -+|||.+|++..|.+|.++.. ++ ++.+.+.......+ . .. .-..|-|
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG------~~----L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGG------QY----LCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCC------ce----eeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 59999888875 578999999999999987643 22 23333332111000 0 01 1123444
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHH
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~ 122 (761)
-..+.+++..-+.|++.+.++.|++++.+
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 44466788888999999999999999864
No 123
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=95.80 E-value=0.0053 Score=69.96 Aligned_cols=95 Identities=28% Similarity=0.433 Sum_probs=63.3
Q ss_pred EEEEeeeeee-cCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCc---ce
Q 004320 20 FKSGPLFISS-KGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK---LL 90 (761)
Q Consensus 20 ~KeGyL~l~K-KG~--~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~---~kk---~~ 90 (761)
..+| -++. ||. ..+.|+.|||+|.|-.|.|-|....... ....|++....+|..-. ..+ ..
T Consensus 736 ~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKA 805 (851)
T KOG3723|consen 736 LIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKA 805 (851)
T ss_pred hhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchh
Confidence 5667 3333 332 2678999999999999999776543321 11336776666643111 111 34
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
|.|.+. +.+|.|.|.++.-+++|++.|.=|++.+
T Consensus 806 FEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 806 FEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred hheeec---CceEEeecccccCHHHHHHHHHHHHHHH
Confidence 555442 5789999999999999999999888644
No 124
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=95.79 E-value=0.0054 Score=76.09 Aligned_cols=155 Identities=15% Similarity=0.228 Sum_probs=120.2
Q ss_pred ccccchHHH---hhhcCCCcHHHHH-HHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc---cCC----CCCCccc
Q 004320 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFS----ADEDAHV 233 (761)
Q Consensus 165 vFGvpL~~l---l~~~~~VP~il~~-~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~---~~~----~~~D~h~ 233 (761)
++|+++..+ ..-....|.++.. |.......|....|+||.++....+...+..++.... ++. ...++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 888888666 2223457888888 7777777899999999999998888888888876421 111 1235567
Q ss_pred hHHhHHHhhhcC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHHh----hCCh
Q 004320 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (761)
Q Consensus 234 vAslLK~fLReL--PePLlp~~ly~~ll----------------~~~~~~~~e~ri-------~~lk~lIl~----~LP~ 284 (761)
+.+.++.|+|.+ |.+......|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 777999999999 99988888888777 333333444555 56665 345 8999
Q ss_pred hHHHHHHHHHHHHHHHHhccccC-CCCc-cchhhhccc
Q 004320 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP 320 (761)
Q Consensus 285 ~N~~lL~~Ll~fL~~Va~~s~~N-kMta-~NLAivfaP 320 (761)
....+|.++..++.+|.....+| -|+. .||..+|++
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~ 658 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFEN 658 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcC
Confidence 99999999999999999999888 7888 999999999
No 125
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.74 E-value=0.0037 Score=73.86 Aligned_cols=81 Identities=21% Similarity=0.378 Sum_probs=60.4
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHH
Q 004320 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLY 114 (761)
Q Consensus 35 k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~ 114 (761)
..|.|-|.|.+.-+|+|||+..+..+. ..+++-|+.+..-.. .....|-+.|.+..+ ..+|+|.|++.--..
T Consensus 938 sgwqkLwvvft~fcl~fyKS~qD~~~l----aslPlLgysvs~P~~-~d~i~K~~vfkl~fk---~hvyffraes~yt~~ 1009 (1036)
T KOG3531|consen 938 SGWQKLWVVFTNFCLFFYKSHQDSEPL----ASLPLLGYSVSIPAE-PDPIQKDYVFKLKFK---SHVYFFRAESYYTFE 1009 (1036)
T ss_pred ccceeeeeeecceeeEeeccccccccc----ccccccccccCCCCC-CCCcchhheeeeehh---hhHHHHhhhhhhhhh
Confidence 479999999999999999998887643 245666666654222 111234466777654 578999999999999
Q ss_pred HHHHHHHHH
Q 004320 115 EWKTALELA 123 (761)
Q Consensus 115 eWI~AL~~a 123 (761)
+|+..|+.+
T Consensus 1010 rw~evi~~a 1018 (1036)
T KOG3531|consen 1010 RWMEVITDA 1018 (1036)
T ss_pred hHHHHhhcC
Confidence 999999855
No 126
>PF15406 PH_6: Pleckstrin homology domain
Probab=95.19 E-value=0.033 Score=51.25 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=47.1
Q ss_pred EEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHH
Q 004320 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119 (761)
Q Consensus 40 RWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~A 119 (761)
-|..-+|.-|.||....+.. . |-+.|.|.....+......+ |.+.. +|..+.|+|.+..|++.||.+
T Consensus 42 AwAsqTGKGLLF~~K~~dka-~-------P~GiinLadase~~~~g~~k--F~f~~---~G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKA-S-------PSGIINLADASEPEKDGSNK--FHFKI---KGHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhhccCceEEEEecccccc-C-------CcceEehhhccccccCCCce--EEEEe---CCceeeeecCCHHHhccHHHH
Confidence 46777887666665322221 1 44557887766655555555 44444 388999999999999999999
Q ss_pred HH
Q 004320 120 LE 121 (761)
Q Consensus 120 L~ 121 (761)
|.
T Consensus 109 lk 110 (112)
T PF15406_consen 109 LK 110 (112)
T ss_pred hh
Confidence 86
No 127
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.06 E-value=0.3 Score=45.43 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=57.4
Q ss_pred EEEEEeeeeeecCCCCCCc-EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEEE
Q 004320 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLF 94 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~W-KKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---~~kk~~Fvit 94 (761)
.+++|=|..... .+.| +.|+|-|-++.|+|.|.+.-..+...-...+.+..+.+.+...-... ..-++.|.|.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 467885543332 1223 56899999999999986532111111111233444444432211000 0113566666
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHH
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~ 122 (761)
.. ..+..|.|+|.|.++...|+.||..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 53 3357799999999999999999975
No 128
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=95.06 E-value=0.026 Score=63.45 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=61.8
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~ 98 (761)
+...| ++.|.......|.-||++|..+.|.||++...+. .|+. |.|.+....-..-..+- ..|.|..
T Consensus 24 ~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~--hGcR-----gsi~l~ka~i~ahEfDe-~rfdIsv--- 90 (611)
T KOG1739|consen 24 VERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETE--HGCR-----GSICLSKAVITAHEFDE-CRFDISV--- 90 (611)
T ss_pred hhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhh--cccc-----eeeEeccCCcccccchh-heeeeEe---
Confidence 44555 4456665667899999999999999999987654 2332 23444332111111222 2344443
Q ss_pred CCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 99 ~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+..++++.|.+...++.|+.+|.-.-.
T Consensus 91 n~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 91 NDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred ccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 257899999999999999999986654
No 129
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.81 E-value=0.33 Score=46.24 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred EEEEEeeeeeec-CC-----CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcceee-----
Q 004320 19 VFKSGPLFISSK-GI-----GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV----- 83 (761)
Q Consensus 19 v~KeGyL~l~KK-G~-----~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i----~L~~I~L~~~~sv~~----- 83 (761)
.+|.|.|..-.. +. .+..-+.+|+.|-.+.|.|.|-+. +..+.+ +...+.+..+.....
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeeccccccccccc
Confidence 467776643222 21 122346789999999999987542 222322 233444443322111
Q ss_pred --ccCCcceEEEEec-CCCC--ceEEEEecChHHHHHHHHHHH
Q 004320 84 --REDKKLLTVLFPD-GRDG--RAFTLKAETSEDLYEWKTALE 121 (761)
Q Consensus 84 --~~~kk~~Fvit~~-~~~g--rty~LqAeSeeE~~eWI~AL~ 121 (761)
....++.|.++.- ...| +.+.|+|+|+.|+.+||.||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 0123566777542 2234 469999999999999999984
No 130
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.69 E-value=0.14 Score=46.15 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=58.0
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC---CCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~---~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
..+++|+|..-..|. =|.|=|-|-++.|+|-+-.. ....+......++|..+.+.... |.+.
T Consensus 2 ~Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~~ 66 (96)
T cd01228 2 QLVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRIH 66 (96)
T ss_pred cccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhcc
Confidence 357889776444443 36677778888888876542 11122233445666665554421 2222
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
.+++++|+|.|.|..|+.+|+.+|+...
T Consensus 67 --~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 --NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred --ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 3458999999999999999999998753
No 131
>PF15404 PH_4: Pleckstrin homology domain
Probab=94.45 E-value=0.18 Score=51.22 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.2
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP 56 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~ 56 (761)
++|+||.+++ ....|+++|+||..+.|..|..-.
T Consensus 1 ~sG~LY~K~~--khs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKPR--KHSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecCC--CCCCceEEEEEEeCCEEEEEEEEe
Confidence 4799995444 346899999999999999998743
No 132
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.82 E-value=1.3 Score=41.64 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=51.9
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC--CceEEEEecChHHHHH
Q 004320 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLYE 115 (761)
Q Consensus 38 KKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~--grty~LqAeSeeE~~e 115 (761)
+.|-+-|-...|.|-|-..... ..+.....--..|.++...-....++..+.|.+...++. ..+|.+||.|.++.+.
T Consensus 25 ~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~ 103 (114)
T cd01232 25 RERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQE 103 (114)
T ss_pred ceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHH
Confidence 5566667777888887644321 111111111222333332221112234466887765553 4799999999999999
Q ss_pred HHHHHHHHHh
Q 004320 116 WKTALELALA 125 (761)
Q Consensus 116 WI~AL~~aI~ 125 (761)
|+..|+.++.
T Consensus 104 W~~~I~~il~ 113 (114)
T cd01232 104 WVKKIREILQ 113 (114)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 133
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.49 E-value=0.016 Score=66.50 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=52.3
Q ss_pred HHHHHHHHhccccCCCCccchhhhccccccCCCCCCCCccccccCC--CCCchHHHHHHHHHhhHHHHHHHHHHHhcccc
Q 004320 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (761)
Q Consensus 294 l~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~--~g~~~aql~~a~~~~~~~~~iVe~LIen~~~I 371 (761)
++||..|+.++....|.+.|||+||||+|+|.+. ++.-... -|+ +++.+.....-++++++.|-+.|
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrske-----ies~lcs~~~Gd------aAf~avq~qsvV~EfilnhvDvl 69 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKE-----IESSLCSHLWGD------AAFSAVQAQSVVSEFILNHVDVL 69 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHH-----HHHhhhcccccc------HHHHHHHhhhhhhhhccccccee
Confidence 3689999999999999999999999999999763 2221111 122 22333344455789999999999
Q ss_pred cCCcc
Q 004320 372 FDDES 376 (761)
Q Consensus 372 F~~~~ 376 (761)
|....
T Consensus 70 F~~~a 74 (670)
T KOG1449|consen 70 FLPTA 74 (670)
T ss_pred cCCcC
Confidence 98655
No 134
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=93.40 E-value=0.087 Score=60.76 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=68.4
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce-eeccCCcceEE
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTV 92 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv-~~~~~kk~~Fv 92 (761)
.+++.++|+|.|+ |-.....+-..||++|-.+.+.|.+-.. .. ++..+.. --.+++...... .......+.|+
T Consensus 267 ~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~--~~~k~~~-r~~~s~~~~~v~~~~~~~~~~tF~ 340 (623)
T KOG4424|consen 267 SPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RL--PGSKYEV-RARCSISHMQVQEDDNEELPHTFI 340 (623)
T ss_pred CcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hc--ccceecc-ceeeccCcchhcccccccCCceEE
Confidence 4567799999666 6555556789999999999888887654 22 1221110 001222221110 11223346677
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
++- ..|..-|+|.|+++-.+|+++|+.+|..+
T Consensus 341 ~~G---~~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 341 LTG---KKRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred Eec---ccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 764 25889999999999999999999999743
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.08 E-value=0.65 Score=52.39 Aligned_cols=111 Identities=20% Similarity=0.268 Sum_probs=85.3
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 004320 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (761)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~ 664 (761)
..||+.|..+..+|. ||+.=+-.|..++.+|+....+-.+|.--|++++++|++|+++...|-..+.--.+. +
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k------l 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK------L 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------H
Confidence 478888888877774 677778889999999999999999999999999999999999999988765422221 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
-..-..+=+.+-..++.|..|++||.+|-+.|--|..-
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 12222233456677888888899888888877666654
No 136
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.20 E-value=0.027 Score=64.68 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=111.7
Q ss_pred CcccccchHHHhh-hcCCCcH-HHHHHHHHHHh---cC--CCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchH
Q 004320 163 SLVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (761)
Q Consensus 163 ~~vFGvpL~~ll~-~~~~VP~-il~~~i~~L~~---~G--l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA 235 (761)
...||.-|..+.- -+++||. .+.+||..+.. ++ +...|.|++..+.... .+...|....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 4455555533332 2567888 77787776665 22 3445667765543221 1223344456889999
Q ss_pred HhHHHhhhcCCCCCCChhhHHHHHHHHhcCC-HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccch
Q 004320 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDR-KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (761)
Q Consensus 236 slLK~fLReLPePLlp~~ly~~ll~~~~~~~-~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NL 314 (761)
.+++.|+|.+|.|+.. .++...| ..+.+..++- -....++.|+.+-..|..||.....-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999544 2222222 2334444443 335899999999999999998877633 899
Q ss_pred hhhccccccCCCCCCCCccccccC--CCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 315 AACMAPLLLRPLLAGECELEDDFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 315 AivfaP~Llr~~~~~~~~le~~~~--~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
+|++.|+++|++.. ++. ++ ..+. .+....+..+.|++....|..+.
T Consensus 343 ~I~~~~~~~r~ppt----L~~-~~~h~~~~-----------~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 343 AIVWSPNLFRPPPT----LNG-ADTHLLSG-----------LNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eeecCCCCCCCCCC----CCc-hhhhhccc-----------CCcceeecccchhhhhhhhhccc
Confidence 99999999999842 222 22 1111 12234567788899998888766
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.97 E-value=5.8 Score=41.99 Aligned_cols=70 Identities=33% Similarity=0.376 Sum_probs=53.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~---~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
.+||.|..-+..|..+|...-+.=..+|+-+++-+.++ ...-..|+++|.+++..|++.+.=..-++..+
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999998766555566666666555544 55556688999999999999888777777777
No 138
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=90.65 E-value=1 Score=41.24 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCCcEEEEEEEeC----CeEEEEcC--CCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEe
Q 004320 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKA 107 (761)
Q Consensus 34 ~k~WKKRWfVL~~----~~L~yYKd--~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqA 107 (761)
...|.|.-.+|.. ..|.||.- ++.++|+-+-. ......+..++.... .++...|++.. .++..|.|.|
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~---C~~I~EvR~tt~LEm-PD~~nTFvLK~--~~~~eyI~Ea 91 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVA---CSSISEVRECTRLEM-PDNLYTFVLKV--DDNTDIIFEV 91 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccccc---hhhhhhhhhcccccc-cCcccEEEEEe--cCCceEEEEc
Confidence 4678887777654 24555544 44443332211 001123333333333 34556788765 3567899999
Q ss_pred cChHHHHHHHHHHHH
Q 004320 108 ETSEDLYEWKTALEL 122 (761)
Q Consensus 108 eSeeE~~eWI~AL~~ 122 (761)
.+..+++.|+..|+.
T Consensus 92 ~d~~q~~SWla~Ir~ 106 (107)
T cd01231 92 GDEQQLNSWLAELRY 106 (107)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999974
No 139
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=90.14 E-value=0.19 Score=60.78 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=57.4
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~ 99 (761)
-.+|||+ |.....+.|.+|||+|.++.|.||++........++. +.+.. .. .......-+.. ..+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~-------~~~~~--a~-i~~~~~~~~~~-~~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGG-------INLVT--AW-IQNGERMDICS-VDGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCCCc-------ccccc--cc-cccCCCcccch-hhcc-
Confidence 3568554 7777789999999999999999998876554322222 22211 00 01111111222 1111
Q ss_pred CceEEEEecChHHHHHHHHHHHHH
Q 004320 100 GRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 100 grty~LqAeSeeE~~eWI~AL~~a 123 (761)
...|+..+-+......|+.+++.+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 467889999999999999999866
No 140
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=90.06 E-value=0.17 Score=60.55 Aligned_cols=93 Identities=23% Similarity=0.418 Sum_probs=64.9
Q ss_pred CcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 004320 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~ 95 (761)
..+++.| |+.|-.. +...+.|||..+.+..+.||...++..+++ .|.+...+.|.. .....+-+++
T Consensus 85 sp~~~~g--wldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~---------~i~va~is~v~~-~gd~kfevit- 151 (1186)
T KOG1117|consen 85 SPVIKSG--WLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKG---------PIPVAAISAVRN-FGDNKFEVIT- 151 (1186)
T ss_pred Cchhhcc--hhhccCcCcccccCccceecCCCCccccCCCCCCCCCC---------ceeeehhhhhhh-ccCceEEEEe-
Confidence 4489999 5445432 245689999999999999999887765333 244444333222 2222334444
Q ss_pred cCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 96 ~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+.|+|.|.++++.++..|+..++.+..
T Consensus 152 ---n~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 152 ---NQRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred ---cceEEEEecCCcccceeeechhhhcch
Confidence 379999999999999999999998874
No 141
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.97 E-value=2.4 Score=39.00 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=46.3
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHHHHH
Q 004320 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (761)
Q Consensus 38 KKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI 117 (761)
.+..|-|-.+.|.|-.-.... +.......+|..+.+.+... ...-+.+|.+.. ..+.+.+||+|.++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D---~~~~kNafki~t---~~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKD---RENAKKVLKLLI---FPESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCC---CcCcCceEEEEe---CCccEEEEeCCHHHHHHHH
Confidence 345456666667666443221 11222334555555544222 112234454433 1578999999999999999
Q ss_pred HHHHHHH
Q 004320 118 TALELAL 124 (761)
Q Consensus 118 ~AL~~aI 124 (761)
..|+++.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999886
No 142
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.95 E-value=3.1 Score=40.18 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=50.7
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHHHHH
Q 004320 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (761)
Q Consensus 38 KKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI 117 (761)
+.|.+-|-...+.|.|-..............--..|.++...-.....+....|.+....+ ..+|.+||.|.+....|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 4577778888888887653221111111111122233322111111122345577766443 468999999999999999
Q ss_pred HHHHHHHh
Q 004320 118 TALELALA 125 (761)
Q Consensus 118 ~AL~~aI~ 125 (761)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999985
No 143
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.70 E-value=1.7 Score=40.98 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=51.2
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceee----eeeCcEEcCCCc--ceee-ccCCcceEEEEecCCCCceEEEEecC
Q 004320 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNSG--SVVV-REDKKLLTVLFPDGRDGRAFTLKAET 109 (761)
Q Consensus 37 WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~----i~L~~I~L~~~~--sv~~-~~~kk~~Fvit~~~~~grty~LqAeS 109 (761)
=+.||.-|-+..+.+.|...... +.+++. +.+..+.|.... .... ...-++.|.+... .....|+|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 35788888888899988664421 122222 222333333221 1110 0112345666543 223579999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 004320 110 SEDLYEWKTALELALA 125 (761)
Q Consensus 110 eeE~~eWI~AL~~aI~ 125 (761)
+++...|+.+|..|+.
T Consensus 97 ee~K~kWm~al~~a~s 112 (116)
T cd01223 97 EHLRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999986
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.70 E-value=3.2 Score=44.46 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=65.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhh-----hhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004320 579 EEELAIQRLEITKNDLRHRIAKEAR-----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (761)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~ 653 (761)
+-...|+++-..+..|+.+|.+... .....+. +.......+.+-..|+..++++++++++.+.--..+...+..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQ-LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888999999987665 2111111 122233445555567777777777777777766666666643
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 654 SSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 654 ~~~~~~----~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
....+. .-........++..++...+..+..|+.++..-+.++.++-.
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 001111222333344444444444444444445555555443
No 145
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=89.63 E-value=0.83 Score=44.15 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.5
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
+.|.|..-++.|..|+|+|+|..++++|+..|..+
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 55666666666778999999999999999999864
No 146
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=26 Score=38.76 Aligned_cols=113 Identities=20% Similarity=0.218 Sum_probs=69.6
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCCCCC
Q 004320 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA--------ERDLRAALEVGLSMSSGQ 657 (761)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~--------e~~~~~~Le~~l~~~~~~ 657 (761)
=.++...+|+.|..+|+-.+-.+|++|.||++.+.+=...|+.++++|+.|++. =...++||+.+=+- -.
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~--~~ 288 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL--EA 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC--cC
Confidence 356677789999999999999999999999998766655555555555555432 12344567665441 11
Q ss_pred CC----C-C-CCCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 004320 658 FS----S-S-RGMDSKTRAELEEIALAEADVARLKQKV----AELHHQLNQQR 700 (761)
Q Consensus 658 ~~----~-~-~~~p~~~~~ll~eia~~E~~v~~Le~~~----~~l~~~l~~~~ 700 (761)
++ + + ..|=.++-+.++.=...|..|-.|++-. .+|-.=|.|-|
T Consensus 289 ~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR 341 (365)
T KOG2391|consen 289 LDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVR 341 (365)
T ss_pred CCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 21 1 1 2233445555566566777777777632 33444444444
No 147
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.34 E-value=2.1 Score=39.97 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=56.2
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHHHH
Q 004320 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (761)
Q Consensus 37 WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eW 116 (761)
=..||++|-...|.+....+... -.--.-.+++.++.++.... ....++.|.|+- +.--...+.|.+.+|+.+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHHH
Confidence 45689999999999998755332 00112346788888875322 134457788763 3334688899999999999
Q ss_pred HHHHHHHH
Q 004320 117 KTALELAL 124 (761)
Q Consensus 117 I~AL~~aI 124 (761)
+..|++.+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998753
No 148
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=88.98 E-value=2.5 Score=43.29 Aligned_cols=71 Identities=37% Similarity=0.405 Sum_probs=48.2
Q ss_pred hhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHH
Q 004320 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEAD 681 (761)
Q Consensus 606 ~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e----ia~~E~~ 681 (761)
+.||+.-++|-+--+.-|..||+|+..|+-|=.. ....+. +.|..=.+..+++|.| |-.||+|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~------------~~~~~~-~~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ------------GNSSGS-SSPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4689998988888888899999999888765321 111111 1223334455666665 7788999
Q ss_pred HHHHHHHH
Q 004320 682 VARLKQKV 689 (761)
Q Consensus 682 v~~Le~~~ 689 (761)
+++.||+-
T Consensus 80 ~~kWEqkY 87 (205)
T PF12240_consen 80 MTKWEQKY 87 (205)
T ss_pred HHHHHHHH
Confidence 99998876
No 149
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=88.95 E-value=0.7 Score=50.50 Aligned_cols=102 Identities=16% Similarity=0.337 Sum_probs=68.1
Q ss_pred CCCCcEEEEEeeeeeec--C-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc-------EEcCCCcceee
Q 004320 14 GASNTVFKSGPLFISSK--G-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-------IDLNNSGSVVV 83 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KK--G-~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~-------I~L~~~~sv~~ 83 (761)
..+..+...| |...+ + ..+..++.||..|+|..+|.|..++-.. ..++-.... +.+-... ..
T Consensus 276 ~v~~qivyMG--Wvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t----~dw~rAe~ty~vye~mfki~Kds--d~ 347 (505)
T KOG3549|consen 276 AVGEQIVYMG--WVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNT----ADWSRAEVTYKVYETMFKIVKDS--DT 347 (505)
T ss_pred CccceEEEee--eccccccCcccccccCceeEEecCcEEEEEcCCCcch----hhhhhhhhhHHHHHHHHHHhccc--cc
Confidence 4567789999 54444 2 3477789999999999999998764321 111111111 1111110 11
Q ss_pred ccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 84 ~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+.+++||.+... .|...||..+...|+-.|-++.+.|+-
T Consensus 348 ~D~R~~CF~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 348 VDSRQHCFLLQSS--GGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred cccccceEEEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 2457789988753 578999999999999999999988764
No 150
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.74 E-value=9.8 Score=44.57 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=72.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLER------RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~------~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~ 653 (761)
++..--||+.-.+.+-..|+.=-+.|+.|=.-+.. |.+.+++++..|+-||-++|.=+.+=...-.+
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~------- 291 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH------- 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH-------
Confidence 33444566666666666665545555555444433 34577888888999998887655444443333
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 654 ~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
++.+...|=.||+..|+|+-.|.+++.+|+.++--|
T Consensus 292 ----------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ----------MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666788999999999999999999999988766
No 151
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=86.12 E-value=2 Score=36.76 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 622 ~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
+|.-+++-+..|+++|+.|..++..+|+.+..-.. -|. + .-++.+|.....-.+++..|+.+|..-.
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~---~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSD---EKK------K---KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999998752111 010 1 3456677888888999999999886544
No 152
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=84.28 E-value=0.18 Score=58.97 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=39.7
Q ss_pred EEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCc
Q 004320 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG 79 (761)
Q Consensus 19 v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~ 79 (761)
-..+||||+.|... ....|+|.||||.+..|++|.+..... .+.++.+..+.|....
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~ 619 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAE 619 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHH
Confidence 45678888777653 255799999999999999999987654 3334444444544433
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.47 E-value=1.2e+02 Score=37.24 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
+-...++|=.||-.|+.|+.-.|+++..|..++.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555443
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.09 E-value=9.7 Score=39.14 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
|..|.+.|..++..|+....--..|+.=+......+. --..--.++.++=+++..++.+|..|.+++.+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666655555555555544332222221 00112234445555555555555555555443
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.11 E-value=1.5e+02 Score=36.56 Aligned_cols=10 Identities=50% Similarity=0.454 Sum_probs=5.3
Q ss_pred HHHHHHhhhh
Q 004320 581 ELAIQRLEIT 590 (761)
Q Consensus 581 ~~~~~~~~~~ 590 (761)
..+|.|||+.
T Consensus 417 ~~a~~rLE~d 426 (697)
T PF09726_consen 417 PDAISRLEAD 426 (697)
T ss_pred hHHHHHHHHH
Confidence 3455566643
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.92 E-value=10 Score=41.19 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=37.2
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~----------r~~Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
...|..-.+|+..|..-++.++.|+..+.+-+....+. |..||.++..|++.|+.+.-.|..|+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 34555556677777777777777776655544433222 344555555555555555555555554
No 157
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=80.60 E-value=1.1 Score=49.67 Aligned_cols=105 Identities=20% Similarity=0.252 Sum_probs=64.5
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc--------EEcCCCcceeeccCCcc
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--------IDLNNSGSVVVREDKKL 89 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~--------I~L~~~~sv~~~~~kk~ 89 (761)
.|-+-|||-.+-.+++...|+..+++|+...|.+|.+-+.++. .+.-+... +.-.+.+.. +...--.
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~ke----aws~P~~~ypLvaTRLvhsg~~~~s-~~~g~~l 365 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKE----AWSRPRHTYPLVATRLVHSGSGKGS-VIKGLTL 365 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHH----HhcChhhhhhhhhhhheecCCCCCC-CcCCceE
Confidence 4666795554444667889999999999999999988765431 11112221 111111110 0011113
Q ss_pred eEEEEecCCCC-ceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 90 LTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 90 ~Fvit~~~~~g-rty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.|.+.+.++.| .+|+|.++|..|+-.|...|-.-.+.+
T Consensus 366 sFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~A 404 (506)
T KOG3551|consen 366 SFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEA 404 (506)
T ss_pred EEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 45554444444 599999999999999999987655543
No 158
>PF15411 PH_10: Pleckstrin homology domain
Probab=80.48 E-value=22 Score=33.57 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=62.0
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC---------CCceeeeee-CcEEcCCCcceeecc-CCc
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTL-GGIDLNNSGSVVVRE-DKK 88 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~---------~~~~~~i~L-~~I~L~~~~sv~~~~-~kk 88 (761)
...|.+.+.|. ..|+-+.+-|-...|.++|........ +.....+.| |.|-+.+.+.+.... ...
T Consensus 8 ll~g~~~V~k~----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~ 83 (116)
T PF15411_consen 8 LLHGTLTVGKD----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGS 83 (116)
T ss_pred EEccEEEEEeC----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCc
Confidence 44454444443 469999999999999999987654431 111222333 457777776655433 233
Q ss_pred ceEEEEecC-CCCceEEEEecChHHHHHHHHHH
Q 004320 89 LLTVLFPDG-RDGRAFTLKAETSEDLYEWKTAL 120 (761)
Q Consensus 89 ~~Fvit~~~-~~grty~LqAeSeeE~~eWI~AL 120 (761)
+...|...+ ..--.|+|...|++.++.|-.+|
T Consensus 84 ~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 84 YSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred eEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 444444422 23358999999999999999875
No 159
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=79.26 E-value=0.9 Score=51.66 Aligned_cols=103 Identities=15% Similarity=-0.019 Sum_probs=59.4
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---C
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~------~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~---k 87 (761)
....|.|+++++....+.|.|.++|++|..+ .|-+|.+++.... . +-..+--+.+.++++.++..... .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~-~-~~~~~~rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESV-R-WPYRCLRRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCccc-c-cchhcceeeEeeccceeeecccccccC
Confidence 4568999999888888889999999999886 3344443322211 1 11111125567777666533211 1
Q ss_pred cceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 88 k~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
...|++..... .. +|-+...-+...|+++|....
T Consensus 84 ~~i~~~f~~~a-~e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRA-EE--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecch-HH--HHHHHHHHHhhhhhhhhhhcc
Confidence 11122221111 11 666667777888999997654
No 160
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.50 E-value=64 Score=35.01 Aligned_cols=114 Identities=25% Similarity=0.277 Sum_probs=72.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE---RRLALEQDVSRLQEQLQAERDLRAALEVGLS-MSSG 656 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~---~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~-~~~~ 656 (761)
+..+..|...-.+++.|+.++.+.+..|+..+..-|+.+.+ .|..||..|..|+++|.--+.+|..=-..|. ...+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 45567777777899999999999999999999888887754 4778999999999999988888876223332 2213
Q ss_pred CCCCC--CCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004320 657 QFSSS--RGMDSKTRAELEEI-ALAEADVARLKQKVAELHH 694 (761)
Q Consensus 657 ~~~~~--~~~p~~~~~ll~ei-a~~E~~v~~Le~~~~~l~~ 694 (761)
..+.. .+..+.....|.+| +-.|..+.+-.+++...+.
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~ 194 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQ 194 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcc
Confidence 22221 22233445556666 3455555555544444433
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.44 E-value=23 Score=36.74 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+-++|-+|++.+..++..|+.+..+++.....+..
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777666544443
No 162
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.87 E-value=0.048 Score=59.86 Aligned_cols=113 Identities=24% Similarity=0.330 Sum_probs=76.8
Q ss_pred HHHHhhhhhHHHHH---HHHHHhhhhhhhhhhHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004320 583 AIQRLEITKNDLRH---RIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (761)
Q Consensus 583 ~~~~~~~~~~~~~~---~~~~~~~~~~~lq~~~~~~k~~~~~~r~~---Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~ 656 (761)
..+-|++.+.+|+- +-....-+||.|=-.++.+++++++|..+ |-.--.+|..+|-.|+.--+.|-.+-+.-.|
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 34556677777664 44667789999988999999999988643 5556677888999998755555444333222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 657 ~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
-++...-+..-.|.| +-+-|.||-+|+|+|..|+..|.-
T Consensus 499 -splaqgkdayELEVL--LRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 499 -SPLAQGKDAYELEVL--LRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred -CccccCcchhhHHHH--HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 112222333333333 456799999999999999998864
No 163
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=74.70 E-value=11 Score=42.31 Aligned_cols=69 Identities=30% Similarity=0.323 Sum_probs=47.7
Q ss_pred HHHhhhhhHHHHHHHHHHh------------------------hhhhhhhhhHHHhhHHH-----------HHHHHH---
Q 004320 584 IQRLEITKNDLRHRIAKEA------------------------RGNAILQASLERRKQAL-----------HERRLA--- 625 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~lq~~~~~~k~~~-----------~~~r~~--- 625 (761)
|++||..|.-||.+...+| .-=.+||+.++|-|..+ .+||.+
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788999999998873332 12235899998877644 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
.+.+-.+||+.|+.|..-|.||=+-|.
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677888888888888888877664
No 164
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=73.59 E-value=1.3 Score=52.28 Aligned_cols=87 Identities=5% Similarity=-0.136 Sum_probs=56.4
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEEEEecC
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVLFPDG 97 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~--~~kk~~Fvit~~~ 97 (761)
.+.| +++++-+..|+|+.+||++.++.+.||+++.+.. .+ .+-+...++.... ..++. ..++
T Consensus 260 s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~---------~~~~~~~~s~~fqli~~t~~-~~~~--- 323 (936)
T KOG0248|consen 260 SRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SV---------TKLEQQGAAYAFQLITSTDK-MNFM--- 323 (936)
T ss_pred HHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-cc---------ceeeccchhHHhhhhhhcee-EEEe---
Confidence 4556 5556667789999999999999999999987532 21 1222222221111 11111 1222
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
..+|++-++...-+..|++++....
T Consensus 324 --~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 324 --TESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred --ccChhhhhhhHHHHHHHHHHHhccc
Confidence 2568999999999999999998654
No 165
>PRK11637 AmiB activator; Provisional
Probab=72.30 E-value=26 Score=40.22 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004320 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (761)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~ 704 (761)
++=.+|+.++.+|..++.++..++..|.+.....+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555544333
No 166
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.22 E-value=1e+02 Score=34.04 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004320 630 VSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (761)
Q Consensus 630 V~~Lq~~L~~e~~~~~~Le~~l~~~~~~ 657 (761)
|-+|++|..+=..=.+.|+.-|..+.+.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~ 207 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSA 207 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 6677777766555566777777655443
No 167
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.05 E-value=30 Score=32.08 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.9
Q ss_pred ceEEEEecCCC--CceEEEEecChHHHHHHHHHHHH
Q 004320 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALEL 122 (761)
Q Consensus 89 ~~Fvit~~~~~--grty~LqAeSeeE~~eWI~AL~~ 122 (761)
.||.|.. +.+ -+++.|-|++.++++.|+..|+.
T Consensus 80 ~~fTIiy-~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVY-GTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEE-CCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 5666654 223 57899999999999999999874
No 168
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=71.92 E-value=0.075 Score=67.71 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=64.7
Q ss_pred EEEEEeeeeeec------CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC----CCceeeeeeCcEEcCCCcceeeccCCc
Q 004320 19 VFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQ----RGGEVNLTLGGIDLNNSGSVVVREDKK 88 (761)
Q Consensus 19 v~KeGyL~l~KK------G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~----~~~~~~i~L~~I~L~~~~sv~~~~~kk 88 (761)
.-.+|+||.+.- ...-++|...||++..+.+.||+|.+..... ..++..+.+....+. ......+++
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~---~a~dy~kkk 2375 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIE---VASDYHKKK 2375 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHH---HHHHHHHHh
Confidence 467899974421 2235789999999999999999997653311 011111111111110 001112455
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+.|.+. ..+|..|.|+|..+++|..|+.++...+.
T Consensus 2376 ~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2376 HVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred Hhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 556554 46799999999999999999999887775
No 169
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.35 E-value=1.4e+02 Score=38.32 Aligned_cols=77 Identities=31% Similarity=0.399 Sum_probs=42.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHHH-----
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-IALAEADVARL----- 685 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e-ia~~E~~v~~L----- 685 (761)
+++|-..+.-++..|+-+|.++-.+++....-=..+|.++. +..-+.+....+.+ |+-++-+|-.|
T Consensus 811 lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~--------k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 811 LRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL--------KKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444445555555555544444444445555432 34456666666666 77777777776
Q ss_pred -HHHHHHHHHHH
Q 004320 686 -KQKVAELHHQL 696 (761)
Q Consensus 686 -e~~~~~l~~~l 696 (761)
++++..||..+
T Consensus 883 Kk~~i~~lq~~i 894 (1293)
T KOG0996|consen 883 KKARIKELQNKI 894 (1293)
T ss_pred HHHHHHHHHHHH
Confidence 36666666544
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.75 E-value=17 Score=36.25 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
.+--.+|..++..|+++|..-..-...|+.-|..-.. . +.+.+|..+|+.|+.++..|+.++..|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~------~--~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS------E--PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566777777777777766666666655531111 1 12478999999999999999999998874
No 171
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.70 E-value=52 Score=39.87 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=32.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~---~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
+++|...-.++..+-.++...+..+ ..+ +++...+......++++...++.+++.-..-...|+..+.
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555443322 222 2223333444455555666666666555544445555444
No 172
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.74 E-value=73 Score=35.25 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.+=+.+..++=++|+.++.+|..+.+++.+|+.+|.+-.
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777766666666666555433
No 173
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.83 E-value=60 Score=39.97 Aligned_cols=109 Identities=19% Similarity=0.373 Sum_probs=64.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCC
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEV----GLSMSS 655 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~---~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~----~l~~~~ 655 (761)
-|+|++.++.++|.|+. .|+...+++-+ .++++|..|.+.=++|.+++++=.+.+..|.. .++...
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777764 23333333222 23444555555555555555544444444432 222211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 656 ~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
.. .|. |-..-++.-.|+..+...+-.|..-+..++.++..|+.
T Consensus 625 ~~--~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQ--LPV-LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred cc--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 44455888899999999999999999999999977654
No 174
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.72 E-value=21 Score=47.40 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=65.4
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ-FSSSRGMDSKTRAELEEIALAEADVARLK 686 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~-~~~~~~~p~~~~~ll~eia~~E~~v~~Le 686 (761)
++-+-..+|..+..+-..|+.++.+|++.|+++..=.+-|..-++...-. .+.=..+=.....++++|+.++.++..||
T Consensus 792 ~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 792 LEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666778888899999999999999987666666555432110 01112234466788999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004320 687 QKVAELHHQLNQQ 699 (761)
Q Consensus 687 ~~~~~l~~~l~~~ 699 (761)
+++.+|..+|.-.
T Consensus 872 ~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 872 IKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877644
No 175
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.66 E-value=78 Score=42.94 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS---SS-RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 619 ~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~---~~-~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
+...+.-||++|..|+..|.+|...|.=+|++...-.|.+. -+ .-+-.+..+|-.+++..|.++..|..++.+++.
T Consensus 1011 l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~ 1090 (1930)
T KOG0161|consen 1011 LNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQA 1090 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34557779999999999999999999999965544334332 11 113344445555566666666666666665554
Q ss_pred HH
Q 004320 695 QL 696 (761)
Q Consensus 695 ~l 696 (761)
.+
T Consensus 1091 ~~ 1092 (1930)
T KOG0161|consen 1091 EV 1092 (1930)
T ss_pred HH
Confidence 33
No 176
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.16 E-value=1.2e+02 Score=32.20 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=61.9
Q ss_pred HhhhhhHHHHHHHH----HHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004320 586 RLEITKNDLRHRIA----KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (761)
Q Consensus 586 ~~~~~~~~~~~~~~----~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (761)
+.|..+.+|..|+- +=.+.+..|+.+ +.+-..|.+.+..+|.+-..|+..-.+=......|+.--.+... -=
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~e---Ek 77 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEE---EK 77 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 34555666666652 112344445444 23333444555555555555554433333333333332211110 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
..|..++.+.-.+|+.|+.++.+.+..+..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999887774
No 177
>PRK11637 AmiB activator; Provisional
Probab=67.26 E-value=1.3e+02 Score=34.41 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (761)
+-..|+.+...+.+|... +..++..+..+...+.+++++...|+.+..+-..+...|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~-----------k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~---------- 226 (428)
T PRK11637 168 RQETIAELKQTREELAAQ-----------KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES---------- 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 445556665555555433 23333444444444444444444444444444444443333
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
..++.-++|+.++.+..+|+..+..+..+
T Consensus 227 -------~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 227 -------SLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334445555566666666666665543
No 178
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.25 E-value=83 Score=35.27 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 673 EEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
.+++.++.++..++.++..++.+
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 179
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=66.73 E-value=41 Score=38.17 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=67.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-------
Q 004320 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------- 659 (761)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~------- 659 (761)
|+.+.+||+.+-. +.|+.|. +|=....+.+..||....+..+++..-...-..|+.|+....|++.
T Consensus 231 l~~~~~dl~~Q~~---~vn~al~----~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 231 LEQTANDLRAQAD---AVNAALR----KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4445555555543 4555543 3334555556666666666666665555555666666654444332
Q ss_pred ----CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 660 ----SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 660 ----~~---~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
=| -+-++.-..|+.||..|+..|..|.+++...+..|..-.
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~ 351 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLE 351 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 345666778999999999999999999988877665443
No 180
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.54 E-value=2.3e+02 Score=32.53 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 622 ~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
-+..+.+|+.-+-+.||+|+--..-||.-++ .-++--..||.-|=.+++..|++|.-+.+.-.++-+
T Consensus 238 Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN-------------d~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~ 304 (395)
T PF10267_consen 238 LKEQYQREYQFILEALQEERYRYERLEEQLN-------------DLTELHQNEIYNLKQELASMEEKMAYQSYERARDIW 304 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Confidence 3445777888888889999888888887665 345566778888888888888888887777776666
Q ss_pred hhcCCc
Q 004320 702 HHYGSL 707 (761)
Q Consensus 702 ~~~~s~ 707 (761)
+...+.
T Consensus 305 E~~Es~ 310 (395)
T PF10267_consen 305 EVMESC 310 (395)
T ss_pred HHHHHH
Confidence 655443
No 181
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.45 E-value=1.3e+02 Score=31.99 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=21.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHH
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le 627 (761)
+++++..-..|+.+|.+--+....++..+..+|..++.+|..|.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444554445555555555555555555554444
No 182
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=65.87 E-value=1.6e+02 Score=30.62 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=74.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhh---------------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq---------------~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~ 646 (761)
++-+|=|.+..-|+.|+-+|++.=..-| ..|.++.+...++-++||-||.+.+++--+|-.||.+
T Consensus 17 aa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~ 96 (205)
T PF12240_consen 17 AACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQF 96 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888885322211 1244455566778899999999999999999999865
Q ss_pred HHHhhcCCCC-----CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 647 LEVGLSMSSG-----QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 647 Le~~l~~~~~-----~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
=-.|-..+.. .+. .|..=+..-....++|.+...-+..||..|..||.+|-
T Consensus 97 a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 97 AMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4332221111 111 12111111114578888888888888888888888764
No 183
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=65.24 E-value=86 Score=36.25 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
..-|.++..|=.||...|++|.-|..+.+.||+||..|+-
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 3457788999999999999999999999999999987764
No 184
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=65.14 E-value=87 Score=32.29 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=66.9
Q ss_pred cccCcccCCCCcccCCCCc--hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHh----hHHHHHHHHHHHHHHHHH
Q 004320 560 WGRSNARKTSSVESIDSSG--EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR----KQALHERRLALEQDVSRL 633 (761)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~----k~~~~~~r~~Le~~V~~L 633 (761)
.|+++. +......||+. +.+-++-||+.-=.+|-.+|++--+ ..++| .....--|.+|||=..=-
T Consensus 74 lG~~~~--s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~-------~~~~~~~~~~~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 74 LGRGGK--SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQ-------AAESRRSDTDSKPALVKREFEQLLDYK 144 (195)
T ss_pred hccccC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCCcchHHHHHHHHHHHHHHH
Confidence 555544 44555667754 4567788898888888888864222 22222 111122244555544433
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 634 QEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 634 q~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
++| |+..-+ ++. .-+...+.+=++|..+|..|.-||.++..=+..|.+-+
T Consensus 145 ~~q------l~~~~~---~~~--------~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 145 ERQ------LRELEE---GRS--------KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHH------HHhhhc---cCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 444332 222 22445677777888888888888888877777776543
No 185
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.06 E-value=0.77 Score=53.04 Aligned_cols=87 Identities=16% Similarity=0.347 Sum_probs=49.2
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHH
Q 004320 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (761)
Q Consensus 34 ~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~ 113 (761)
.|..+|+||....-.+.+|++..+.. +.+-..+.+.+|.++.+........ ..|.+.+....-..+|+.|+++...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~--~i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKY--AIKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccc--eEEEEeecCCccceeEEecCCHHHH
Confidence 55566666666554444444332222 1122233455666655443322222 3344444333356899999999999
Q ss_pred HHHHHHHHHHH
Q 004320 114 YEWKTALELAL 124 (761)
Q Consensus 114 ~eWI~AL~~aI 124 (761)
-+||+|.+-|-
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999998663
No 186
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.98 E-value=29 Score=29.07 Aligned_cols=27 Identities=30% Similarity=0.542 Sum_probs=21.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 613 ERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 613 ~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
+.|=+....+..+|+++|.+|++++.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456678889999999999999865
No 187
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.66 E-value=1.3e+02 Score=31.97 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 613 ~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.+......+++.+|+-++..|...++
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445544444444333
No 188
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=64.35 E-value=20 Score=30.45 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 628 QDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 628 ~~V~~Lq~~L~~e~~~~~~Le~~l~~-~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
|-+..|+++|+.|..++...|+.+.. ... +.. =.+.++..+..-+++|..|+.+|..-..
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~------------~~~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTD------------KKK--VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH------------HCH---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------cHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987762 111 000 2344566666666777777776665544
No 189
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.35 E-value=29 Score=29.80 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=39.3
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH----------HHHHHHHHHHHHHHHHHHHHHH
Q 004320 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~----------~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
++||+.+..||.++.-=.+-|.+-|....+=.. ..++.=..|..||..|+++|++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998778888877765443222 1123334588899999998765
No 190
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.84 E-value=1.4e+02 Score=35.24 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 665 DSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
|.....|-.+|+-++.++..|+..+.++..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677677666666666664444
No 191
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=61.38 E-value=1.7e+02 Score=33.07 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=60.3
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEEEecCCCCceEEEEecChHHH
Q 004320 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (761)
Q Consensus 35 k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~-~~kk~~Fvit~~~~~grty~LqAeSeeE~ 113 (761)
..|++.|||++...+.||.+....... --.+.|++..|+.+... ...++.|.|.. .+.+|.|.|.+..-+
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~------~L~~~~~LR~C~~v~e~a~q~nY~~~i~~---~~~~~tL~~~~s~Ir 103 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEAD------ELDGEIDLRSCTDVTEYAVQRNYGFQIHT---KDAVYTLSAMTSGIR 103 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc------cCCccccHHHHHHHHHHHHHhccceeecc---cchhhhhHHHHHHHH
Confidence 459999999999999999987543211 12345888887764332 23455566644 378999999999999
Q ss_pred HHHHHHHHHHHh
Q 004320 114 YEWKTALELALA 125 (761)
Q Consensus 114 ~eWI~AL~~aI~ 125 (761)
..|+.|+++...
T Consensus 104 ~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 104 RNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHhccC
Confidence 999999997763
No 192
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.35 E-value=56 Score=40.39 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=62.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (761)
...++|+..|.+|...+++--. .++..+.. =.++|+.+..||.+|.-=.+...++|..+.....
T Consensus 596 eelE~le~eK~~Le~~L~~~~d-------~lE~~~~q----L~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e----- 659 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQD-------QLESLKNQ----LKESEQKLEELQSELESAKESNSLAETQLKAMKE----- 659 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3455666666666655553222 22222222 2568999999999999999999999998863311
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
.-+.+-.-+..+|+++..|-.+|..|..+|-.+|.-
T Consensus 660 -----~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~ 695 (769)
T PF05911_consen 660 -----SYESLETRLKDLEAEAEELQSKISSLEEELEKERAL 695 (769)
T ss_pred -----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112222333456777777777777777777777653
No 193
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=61.13 E-value=1.8e+02 Score=29.30 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=24.4
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~ 642 (761)
+|..-+..-..++..+..|+.||.+|+.+|++|..
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443444445677777788899999888888865
No 194
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.72 E-value=41 Score=39.74 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 594 ~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
||.++-+--|++.-|+.- ...+.+....|+.+|.+|+.+|+.++.-..-|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~----~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKE----NEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444444422 223334445555556666666655554444444
No 195
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=59.69 E-value=1.5e+02 Score=34.25 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=28.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 609 q~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
++.+..|+..++..+..+++.+..++.+++.=+.+..+++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444556666677777777777777777777666666666543
No 196
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=59.12 E-value=7.9 Score=45.19 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=54.8
Q ss_pred CCCcEEEEEeee--eeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc---EEcCCCcceeeccCCcc
Q 004320 15 ASNTVFKSGPLF--ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG---IDLNNSGSVVVREDKKL 89 (761)
Q Consensus 15 ~~~~v~KeGyL~--l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~---I~L~~~~sv~~~~~kk~ 89 (761)
.+++..|+||+. ..+.. .-||.|..|+...+..|.+..... . .-.++|.. +...+..+..+.....+
T Consensus 409 ksst~~kEGWmvHyt~~d~----lRkrHYWrldsk~itlfqn~s~~r--y--YkeIPLsEIl~v~~~~~~~~vp~~~~ph 480 (888)
T KOG4236|consen 409 KSSTKLKEGWMVHYTSKDN----LRKRHYWRLDSKCITLFQNESTNR--Y--YKEIPLSEILSVSSNNGFSLVPAGTNPH 480 (888)
T ss_pred cchhhhhcceEEEEechhh----hhhhhhheeccceeEeeecCCCce--e--EEeecHHHhheeeccCCcccCCCCCCCc
Confidence 456788999662 22221 123444468888888887765422 0 01122221 11122222223344568
Q ss_pred eEEEEecCCCCceEEEEecC------------hHHHHHHHHHHHHHH
Q 004320 90 LTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELAL 124 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeS------------eeE~~eWI~AL~~aI 124 (761)
||.|.+ +.+.||-.++ ...+.-|-.||+.++
T Consensus 481 cFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 481 CFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred eEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 999986 3466666666 445889999999876
No 197
>PLN02372 violaxanthin de-epoxidase
Probab=58.18 E-value=31 Score=39.08 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=48.4
Q ss_pred CCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 004320 576 SSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE----QLQAERDLRAALEVGL 651 (761)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~----~L~~e~~~~~~Le~~l 651 (761)
.|+-+--+++|||.+-.+....|.|||+ +--.+||+||.++.+ -++.| +|+.++
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~~-----------------~~~~e~~~~v~~~~~~~~~~~~~~-----~~~~~~ 412 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEAR-----------------QIEEELEKEVEKLGKEEESLFKRV-----ALEEGL 412 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 4566666799999999999999998832 122345566666555 22222 344443
Q ss_pred cC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 004320 652 SM-SSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (761)
Q Consensus 652 ~~-~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~L 685 (761)
.. .....++-..|-.+.+++|+++.+.=.+|.+|
T Consensus 413 ~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~ 447 (455)
T PLN02372 413 KELEQDEENFLKELSKEEKELLEKLKMEASEVEKL 447 (455)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 21 11112222345555666666666555554443
No 198
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.12 E-value=1.8e+02 Score=27.87 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhHHH--HHHHHHHhhhh----hhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKNDL--RHRIAKEARGN----AILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.+.+..++...+.|| |.+|+++|..| -++++..-..=..+++.-..++.++..|+..++
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665 34567777666 234443332223333333344444444444443
No 199
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.88 E-value=1.3e+02 Score=37.44 Aligned_cols=97 Identities=15% Similarity=0.279 Sum_probs=63.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 004320 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (761)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~ 658 (761)
+=|.+|++||..+.+++.+..+ =+.+...+++.+..+.+.+..|+++-.++.+++++| .+.+|+.|-.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~a~~------ 584 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEE----AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKEAKK------ 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------
Confidence 5677899999988888876542 233556667777778888888888888887777766 4566666554
Q ss_pred CCCCCCChhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 004320 659 SSSRGMDSKTRAELEEIAL---------AEADVARLKQKVAELHHQ 695 (761)
Q Consensus 659 ~~~~~~p~~~~~ll~eia~---------~E~~v~~Le~~~~~l~~~ 695 (761)
.++++|.++-- .+.++....+++..++.+
T Consensus 585 --------~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 585 --------EADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred --------HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhh
Confidence 45777777753 233444444445444443
No 200
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=57.83 E-value=70 Score=31.37 Aligned_cols=107 Identities=16% Similarity=0.280 Sum_probs=62.8
Q ss_pred cEEEEEeeeeeec---CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCc---------------eeeeeeCcEEcCCCc
Q 004320 18 TVFKSGPLFISSK---GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG---------------EVNLTLGGIDLNNSG 79 (761)
Q Consensus 18 ~v~KeGyL~l~KK---G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~---------------~~~i~L~~I~L~~~~ 79 (761)
.....|..|+--- |...|.=.---||.+.-...+||+....+.+-++ ...++.....+....
T Consensus 27 LL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n 106 (160)
T cd01255 27 LLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASS 106 (160)
T ss_pred hhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCC
Confidence 3445566665432 2112233446788888888888886543322111 112333333333322
Q ss_pred ceeeccCCcceEEEEe-----cCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 80 SVVVREDKKLLTVLFP-----DGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 80 sv~~~~~kk~~Fvit~-----~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
. ...+.++.+.++. .++..++|.|++.+.+-.+..+..|+..+..
T Consensus 107 ~--ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 107 A--ADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred C--cCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 2 2234556666543 3346689999999999999999999998863
No 201
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.46 E-value=1.2e+02 Score=31.02 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=50.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 004320 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (761)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~---~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (761)
.+--.+.+|+.++...--.+..|++.+..+.. .+...+..|+..+..|...|.+-......|..-+
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~----------- 153 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL----------- 153 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34456778888887666666666666555444 4455566788888888888888877777776533
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
..|-.+..++|+.+.+|+++=.+|=.++-+..
T Consensus 154 ------~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 154 ------QALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888899999999888888766665543
No 202
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=57.25 E-value=69 Score=35.17 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=52.1
Q ss_pred HHhhhhhHHHHHHHH-----------HHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004320 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (761)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~ 653 (761)
.+||..+..|++||. .-||||..|++.+.= =..|..|+.+|.++|.+-...-..
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L--------~~~L~~eI~~f~~~l~~~~~~~e~------- 109 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL--------TKDLRREIDSFDERLEEAAEKEEL------- 109 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 899999999999992 568999999998762 234666677776666543332221
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 654 ~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
+..-+.--++|..+|.++..|=..+.+
T Consensus 110 -----------~~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 110 -----------SKSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 111123345666677776666555554
No 203
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.19 E-value=1.3e+02 Score=33.99 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhH-----HHHHHHHHHhhhh-hhhhhhHHHhh-------HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERRK-------QALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~lq~~~~~~k-------~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
.++..|+||..+. +...+..|||-+- |.||+.--|+- .+++..|-.|+.+.+..+++|++
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777765 5556666666543 45777655443 35555566666666666655543
No 204
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.16 E-value=2e+02 Score=29.65 Aligned_cols=115 Identities=19% Similarity=0.299 Sum_probs=74.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~----------r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
.-|-+|.+.=.|||.+|..=.++|..|..--.|..+++..+ -..-..||..|+.+|..=++--.++++=+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888899999888888888877666666666444 44466777788887776333333333332
Q ss_pred cCCCC-------------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 652 SMSSG-------------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 652 ~~~~~-------------~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
....+ .++--..||. -.+|-..+..++..+..-+.+|..|..+|-
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1112245665 467777788888887777777777776553
No 205
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.10 E-value=1.2e+02 Score=39.79 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=51.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCC
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVS----RLQEQLQAERDLRAALEVGLSMSS 655 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~----~Lq~~L~~e~~~~~~Le~~l~~~~ 655 (761)
-+..+++|+...+..+.++.++ .+.++.....++...++.-.+|++++. .+...++.++. -|...+..-.
T Consensus 382 y~~~~~~l~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~ 455 (1201)
T PF12128_consen 382 YNKLKQKLEEAFNRQQERLQAQ---QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQRE---QLKSELAELK 455 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3456667766666655555433 333344444444444333333333333 22223332222 1222221111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 656 ~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
..+.. |..+.++..+++.++.++....+++.....++.+.+
T Consensus 456 ~~~~~----~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 496 (1201)
T PF12128_consen 456 QQLKN----PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQ 496 (1201)
T ss_pred HHHhC----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 334567778888888777776666655555444333
No 206
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.45 E-value=1.4e+02 Score=35.10 Aligned_cols=36 Identities=14% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccc
Q 004320 675 IALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDR 713 (761)
Q Consensus 675 ia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~~~~~~~ 713 (761)
|.-++.++..++.++..+...+..-.. ...|..|.+
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~---~~~Cp~C~~ 292 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEK---GGVCPTCTQ 292 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCC
Confidence 344445555555555554444333322 334444444
No 207
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=54.40 E-value=15 Score=43.08 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=56.9
Q ss_pred CCCcEEEEEEEeC---CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecCh
Q 004320 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (761)
Q Consensus 34 ~k~WKKRWfVL~~---~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSe 110 (761)
.+.|+.-|+++-. ..++.|....+.. ....+++.++.+..-+.+ ...+..+.|.++.. ...|+|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~----a~~~iPl~~~~v~~pe~~-~~~D~~~~~k~~~s---~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVR----AQATIPLPGVEVTIPEFV-RREDLFHVFKLVQS---HLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccc----cccccccCccccCCCccc-ccchhcchhhhhhh---cceeeeccCCH
Confidence 4679999998754 3777777666533 223567777777643332 22333345555543 46899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004320 111 EDLYEWKTALELALA 125 (761)
Q Consensus 111 eE~~eWI~AL~~aI~ 125 (761)
+-.+.|+..|..|..
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988764
No 208
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=54.03 E-value=9.9 Score=44.52 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.8
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+||+|.. ..|.++.|.|.+.+|++.||+||+.-|-
T Consensus 446 e~F~IVs--~tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVS--NTGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEec--cccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 4787764 3488999999999999999999998774
No 209
>PRK11519 tyrosine kinase; Provisional
Probab=53.48 E-value=64 Score=39.68 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 604 GNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 604 ~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
.++-++..+++|......-..-|++.+.+|+++|++
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~ 285 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDV 285 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666666654
No 210
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.37 E-value=33 Score=40.39 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
+-.+..++..++.-+|.++..|++++..|+.+|..-.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445677777788888888888888888888775443
No 211
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.44 E-value=1.8e+02 Score=30.06 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (761)
.|..|-.--.+++.+...--|.=+.+++. -..+.+-=..++++|..|+++|..-..-..+|..+-.+- .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl-------~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL-------K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 45555555555555444333332223332 223333334578999999999998888888887654321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 663 GMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
.+-.+.+.|=-|-.+|+..+.+|+++-.+|+.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444444555555555555555555554
No 212
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.21 E-value=2.1e+02 Score=31.15 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=20.8
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (761)
Q Consensus 607 ~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~ 642 (761)
.|+...+...+.+.+....+|..+..|+++|+.|+.
T Consensus 222 ~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 222 KLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555566666666666666666654
No 213
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=51.72 E-value=2.4e+02 Score=38.60 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=43.6
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~----------~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
+.|..+.+|...-.+..-+=..||..+..++. .+...+..||.++..++.++..|...-..|+.-.
T Consensus 856 ~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~ 931 (1930)
T KOG0161|consen 856 KSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKK 931 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555554443 5567788999999999999999999888888644
No 214
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=51.55 E-value=2.7e+02 Score=31.58 Aligned_cols=95 Identities=26% Similarity=0.269 Sum_probs=60.3
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 004320 586 RLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (761)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~lq~~~~---~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (761)
|.|..-..|+..|..=+++|+-||..-. +.=++-++-+..-++|-..-..|||.|-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec--------------------- 340 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC--------------------- 340 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4455556788899999999999885422 2222222223333333322222333332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004320 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
..+++-.|+|=|.|..|--.|++++.+.+.+|-|.+.+-
T Consensus 341 --~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 341 --ARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677888889999999999999999999888877543
No 215
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.37 E-value=2.7e+02 Score=27.94 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERR 623 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r 623 (761)
+..+..++..-+.|+..+..+-+.++.++..+..-+.....-+
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555556666665555555555555554444443333
No 216
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.33 E-value=1.2e+02 Score=27.69 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
.+|-++...|+.+++.=+.-|..+...+...... . ..+.+|++|+..+=.++..||.++..+..+|...
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~----~---~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKA----G---EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT----T---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555554321110 0 4567888888888888888888888887777654
No 217
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=50.43 E-value=68 Score=29.45 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=44.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhh----hhHHHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHER----------RLALEQDVSRLQEQLQAERD 642 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq----~~~~~~k~~~~~~----------r~~Le~~V~~Lq~~L~~e~~ 642 (761)
|.-++..=+++|.|||.==|-=++|= .+.+.||-+..+. =.++|.|+..||.||..+.+
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ld 73 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLD 73 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999986655555555 6778888777655 34589999999999987654
No 218
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.79 E-value=93 Score=31.81 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (761)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~~~~l~ 693 (761)
..-.++|+++..|+.++..|+.++..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888777443
No 219
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.78 E-value=2.3e+02 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 677 LAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 677 ~~E~~v~~Le~~~~~l~~~l~ 697 (761)
..+.|+-+-|.++..|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666666666654
No 220
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=49.43 E-value=49 Score=31.98 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
-|+-|.+||.|||. ||. -++.+..-...|-.-|+.|+..|.+|+.--.-|..
T Consensus 23 WeiERaEmkarIa~-------LEG----E~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 23 WEIERAEMKARIAF-------LEG----ERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred hHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35668899999973 333 33444445556777789999999999876554443
No 221
>PRK09039 hypothetical protein; Validated
Probab=49.14 E-value=2.8e+02 Score=30.99 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=10.5
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAK 600 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~ 600 (761)
.|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 355556666666666643
No 222
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=49.09 E-value=31 Score=33.78 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-CC---CCCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 629 DVSRLQEQLQAERDLRAALEVGLSMSSG-QF---SSSRGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 629 ~V~~Lq~~L~~e~~~~~~Le~~l~~~~~-~~---~~~~~~p~~~~~ll~eia--~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
||+-|-+||+.|.... |.||..-.. .+ +-...|-.|--+.=++|+ .-|.-+.-=|.++.+|+..|.++++.
T Consensus 39 eieiL~kQl~rek~af---e~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~eLk~~l~sQK~~ 115 (153)
T PF15175_consen 39 EIEILSKQLEREKLAF---EKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQEDILNGKENEIKELKQRLASQKQN 115 (153)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchHHHHhhhHHHHHH
Confidence 7888999999987643 444421100 00 001222223233334555 45555555578899999999999998
Q ss_pred -hcCCccccccc
Q 004320 703 -HYGSLSDACDR 713 (761)
Q Consensus 703 -~~~s~~~~~~~ 713 (761)
+...+.|..-+
T Consensus 116 ~Hk~qlsdl~Iq 127 (153)
T PF15175_consen 116 FHKRQLSDLRIQ 127 (153)
T ss_pred HhhccchhhHHh
Confidence 78888775544
No 223
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.89 E-value=1.1e+02 Score=28.51 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=4.5
Q ss_pred HHHhhhhhHHHHHHHH
Q 004320 584 IQRLEITKNDLRHRIA 599 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (761)
-.+||+.++++|++.+
T Consensus 4 ~~~l~as~~el~n~La 19 (107)
T PF09304_consen 4 KEALEASQNELQNRLA 19 (107)
T ss_dssp ----------HHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3578888888888873
No 224
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.88 E-value=1.7e+02 Score=36.12 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=16.3
Q ss_pred CCCchHHHHHHHhhhhhHHHHHHHH
Q 004320 575 DSSGEEELAIQRLEITKNDLRHRIA 599 (761)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (761)
|....+|.+++-=-+....|+.||.
T Consensus 13 ~g~~~Ee~Ll~esa~~E~~~~~~i~ 37 (717)
T PF09730_consen 13 DGEEREESLLQESASKEAYLQQRIL 37 (717)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777766666677777775
No 225
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.60 E-value=1e+02 Score=27.59 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~ 707 (761)
..|++..++.|+ .|..-|..++.....+|.+-|.+|..++
T Consensus 31 ~eLs~e~R~~lE------~E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 31 RELSPEARRSLE------KELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred cCCChHHHHHHH------HHHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 557888887765 6777788888888888888888777665
No 226
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.15 E-value=96 Score=37.05 Aligned_cols=102 Identities=23% Similarity=0.352 Sum_probs=60.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER------RLALEQDVSRLQEQLQAERDLRAALEVGLSMSS 655 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~------r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~ 655 (761)
.-++||+.--.+|+..|-.-=+.+..|-+.|++=+...+.. =.+++.++.+|++.|+++......|++=|..-.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666555566666666665544433221 124788899999999999888888887664321
Q ss_pred --CCCC-CCCCCChhHHHHHH--HHHHHHHHHH
Q 004320 656 --GQFS-SSRGMDSKTRAELE--EIALAEADVA 683 (761)
Q Consensus 656 --~~~~-~~~~~p~~~~~ll~--eia~~E~~v~ 683 (761)
-.+- +.-..|-+.-+.+. .|+.+|++..
T Consensus 509 k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~g 541 (652)
T COG2433 509 KMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541 (652)
T ss_pred HHHhhhhcCCCcceehhhhhhHHHHHhHHHhhc
Confidence 1111 23445655555443 5555555543
No 227
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.05 E-value=3.1e+02 Score=35.07 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (761)
||-+++.|-..|..|..+|.+=.+. ..==++++.....+..++.-+.-|+..++..|.....=-.-++..+
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~-~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i-------- 720 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKR-RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEI-------- 720 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 6888999999999999999754331 1111233333333344444444444444444432221111122222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004320 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGS 706 (761)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s 706 (761)
.-++|+.-++..+|-..|.++-.|+.++..+...++..=-.+.|-
T Consensus 721 --~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv 765 (1141)
T KOG0018|consen 721 --DEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGV 765 (1141)
T ss_pred --HhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCe
Confidence 135667778888999999999999999998888887665444443
No 228
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=48.00 E-value=1.5e+02 Score=39.91 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=81.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA-----------LEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~-----------Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
+..|.+|+...++|+..|.+....+..|+...++.|+..++-+.. |.-++.+|++.|..=.++-.=|+.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888899999999999999999999999977666555 777999999999977777776776
Q ss_pred hhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 650 GLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 650 ~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
-+++-. ..+-.+..++-.+++.+..+|..|+..-..|-..+...+.
T Consensus 1336 ~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1336 ELNRLQ------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 2233344556666777776666666555555555444443
No 229
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.63 E-value=2.9e+02 Score=36.08 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=4.2
Q ss_pred ceEEEEecC
Q 004320 101 RAFTLKAET 109 (761)
Q Consensus 101 rty~LqAeS 109 (761)
..||+--..
T Consensus 110 S~Y~INg~~ 118 (1163)
T COG1196 110 SEYYINGEK 118 (1163)
T ss_pred cEEEECCcE
Confidence 355554443
No 230
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.93 E-value=2.1e+02 Score=30.68 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=47.5
Q ss_pred hhhhhhhHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCC-CCCCCCCCCChhHHHHHH
Q 004320 605 NAILQASLERRKQALHERR-------LALEQDVSRLQEQLQAERDLRAALEVG---LSMSS-GQFSSSRGMDSKTRAELE 673 (761)
Q Consensus 605 ~~~lq~~~~~~k~~~~~~r-------~~Le~~V~~Lq~~L~~e~~~~~~Le~~---l~~~~-~~~~~~~~~p~~~~~ll~ 673 (761)
|..|-..+++-|..+...| .+||.|.+.++.+-..-+.--+-||.| |.++. .++.+-..+-.+...-|+
T Consensus 68 nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 68 NQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3344444444444443333 446666665554443333333344433 23221 222222333444444556
Q ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAE----------ADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 674 eia~~E----------~~v~~Le~~~~~l~~~l~~ 698 (761)
-+|+|| +.|-+|+.+.-+|++.|.-
T Consensus 148 rnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 148 RNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 4577889999999987753
No 231
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=46.80 E-value=4.9e+02 Score=29.66 Aligned_cols=71 Identities=25% Similarity=0.236 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004320 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
..+..|..=+-+-||+|+=--.-||.-|+ .-+.--..|||-|--|.+-.|++|.-.++.-.+..++.
T Consensus 288 e~~krdy~fi~etLQEERyR~erLEEqLN-------------dlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEa 354 (455)
T KOG3850|consen 288 EQIKRDYKFIAETLQEERYRYERLEEQLN-------------DLTELQQNEIANLKQELASMEERVAYQSYERARDIQEA 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777776677776665 12233356888888888888888888888877777776
Q ss_pred cCCc
Q 004320 704 YGSL 707 (761)
Q Consensus 704 ~~s~ 707 (761)
..|.
T Consensus 355 lEsc 358 (455)
T KOG3850|consen 355 LESC 358 (455)
T ss_pred HHHH
Confidence 6543
No 232
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.46 E-value=2.1e+02 Score=29.73 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 671 ELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 671 ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
|-+|-+.|..++..+..++..|..++...+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544443
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=46.44 E-value=26 Score=42.77 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=33.5
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
+.+.|++.+.....-.|.|.|++.+++.+|+++|+.+...+
T Consensus 873 ~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 873 KSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 33677777766666789999999999999999999987644
No 234
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.05 E-value=1.9e+02 Score=35.67 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~ 660 (761)
+++.-+|-..|.|+|.-+ +|+|-||. .+..++..+...|..++.||.++|+.+..++.+-
T Consensus 322 h~enmkltrqkadirc~L-lEarrk~e---gfddk~~eLEKkrd~al~dvr~i~e~k~nve~el---------------- 381 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCAL-LEARRKAE---GFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL---------------- 381 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhc---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
|.||++-|-+++.|--|+.+|-.|-.
T Consensus 382 --------qsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 382 --------QSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhhhhhh
No 235
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=45.99 E-value=3.2e+02 Score=27.32 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=58.4
Q ss_pred HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--ChhHHHHHHHHH
Q 004320 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM--DSKTRAELEEIA 676 (761)
Q Consensus 599 ~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~--p~~~~~ll~eia 676 (761)
.--.+-+..||+.|.-.+.++.+.=.+|.+-..+.....+.-...+..|...+. ..++|++-.++ -...=.+..+++
T Consensus 11 ~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~-gg~~f~i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 11 QRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT-GGAPFSIDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHHHHHH
Confidence 333466777777777666666666555555555555555544445555554443 11233322222 223345666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 677 LAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 677 ~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.+|.++..|.+.|..-+.++...+
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~ 113 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATR 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777766554
No 236
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=45.57 E-value=2.1e+02 Score=27.71 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=40.7
Q ss_pred hhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 004320 605 NAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (761)
Q Consensus 605 ~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~ 684 (761)
=..+++.++....+.......+++++..++++|+.+.. .++ +...++.-.|+...+.+
T Consensus 34 ~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------~ls-----~~~~~~~~~~l~~~~~~--- 91 (158)
T PF03938_consen 34 GKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------TLS-----EEERQKRQQELQQKEQE--- 91 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------S-----SHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccc-----hhHHHHHHHHHHHHHHH---
Confidence 33455566666666666666666666666666666543 010 23334444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 004320 685 LKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 685 Le~~~~~l~~~l~~~~~~~ 703 (761)
|.+....++.++.++++.-
T Consensus 92 l~~~~~~~~~~l~~~~~~~ 110 (158)
T PF03938_consen 92 LQQFQQQAQQQLQQEEQEL 110 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666543
No 237
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.24 E-value=2.7e+02 Score=33.05 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=72.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~---~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~ 657 (761)
|--|.|-.-.|.++|+-|. .||-..+.+-+ ..+|.|.-++.--.+|.++.++=..-|..|++-+++-
T Consensus 573 EqYi~~~dlV~~e~qrH~~-------~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L--- 642 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVK-------LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL--- 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Confidence 4456666666666666553 23332222222 2345566677777778888888788888888766531
Q ss_pred CCCC-CCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 004320 658 FSSS-RGMDSKTRAEL---EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSD 709 (761)
Q Consensus 658 ~~~~-~~~p~~~~~ll---~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~~~ 709 (761)
+..+ +++|+-+.+.+ .|+-.+-.++--|-.-+..++...+.||.+...+..+
T Consensus 643 ~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~a 698 (741)
T KOG4460|consen 643 LHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSA 698 (741)
T ss_pred HhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 56777666555 3666666666666666677777777777766555554
No 238
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=44.56 E-value=48 Score=39.43 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=47.3
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcc-------eeeccCCcceEEEEecCC-CC-
Q 004320 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGS-------VVVREDKKLLTVLFPDGR-DG- 100 (761)
Q Consensus 34 ~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i----~L~~I~L~~~~s-------v~~~~~kk~~Fvit~~~~-~g- 100 (761)
+...+..|+.|-.+.|.+.|-+.... +.+ +-..+.+..+.. .......++.|.++.-.. .+
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~------f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~ 569 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGS------FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGR 569 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCc------eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCC
Confidence 33456778888888888876544321 111 111233333221 000122346677765222 23
Q ss_pred -ceEEEEecChHHHHHHHHHHH
Q 004320 101 -RAFTLKAETSEDLYEWKTALE 121 (761)
Q Consensus 101 -rty~LqAeSeeE~~eWI~AL~ 121 (761)
..|+|+|++..|+.+||.|+.
T Consensus 570 ~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 570 QTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ceeeeecCCchHHHHHHHHhcC
Confidence 479999999999999999985
No 239
>PF14992 TMCO5: TMCO5 family
Probab=44.36 E-value=1.3e+02 Score=32.87 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 661 SRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
+...-.+.+-+++++|-.|.+++++|......
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444778889999999999999997544433
No 240
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.90 E-value=4.7e+02 Score=28.95 Aligned_cols=48 Identities=27% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~ 635 (761)
.+.+.+.+|.++.|.+.-..++.+-|.++- .++++..+|+.+|..|++
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~--------~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKP--------KLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 455666667777777776666666665544 344455555555555443
No 241
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.55 E-value=4.9e+02 Score=28.76 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 004320 616 KQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 616 k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
...+++++.+|+.++.+|+....
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777776644
No 242
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.38 E-value=2.9e+02 Score=35.66 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=32.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~ 654 (761)
.++++....+|.+--|-+..++|.+++++.+.-...++.+...+
T Consensus 395 ~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 395 DLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 44555566677777788888999999998888888888766543
No 243
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.36 E-value=1.2e+02 Score=34.42 Aligned_cols=87 Identities=25% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQA---ERDLRAALEVGLSMSSGQFSSSRGMDSKTRA----ELEEIALAEADVAR 684 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~---e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~----ll~eia~~E~~v~~ 684 (761)
++.-+.++.+++..+|.||..|.+.|.. +.+|-.-.+.|.. .-.|.++ ...||+-|-...++
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~E-----------d~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKE-----------DEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----------hHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555667788888899999998887764 3344433333332 1123333 24677777777888
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccccccc
Q 004320 685 LKQKVAELHHQLNQQRQHHYGSLSDACDR 713 (761)
Q Consensus 685 Le~~~~~l~~~l~~~~~~~~~s~~~~~~~ 713 (761)
-|+.+.+|...+++- ..|++..+..
T Consensus 174 aE~~i~El~k~~~h~----a~slh~~t~l 198 (542)
T KOG0993|consen 174 AEQRIDELSKAKHHK----AESLHVFTDL 198 (542)
T ss_pred HHHHHHHHHhhhccc----chHHHHHHHH
Confidence 888888888555543 2355544443
No 244
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.90 E-value=2.1e+02 Score=34.06 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~-------~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
...|..||+|+.+|+.++.+ ++.-++.+.....| .+...+.+-.+..=+...|+.+|+++.+|..+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45688899999999988864 33333333221111 123445666666667777778888877777777776
Q ss_pred HHHHHHHH
Q 004320 693 HHQLNQQR 700 (761)
Q Consensus 693 ~~~l~~~~ 700 (761)
+.+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 66666555
No 245
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=42.72 E-value=72 Score=29.73 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 675 IALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 675 ia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
...+.++|-.||++|.+|..++.
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 85 MDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888888888877653
No 246
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=42.72 E-value=38 Score=43.17 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=37.6
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcc
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~ 130 (761)
.++|-||+|......-..|-+.|.|..|++.|++.|+.++...|..
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4677788887654445689999999999999999999999876643
No 247
>PF14282 FlxA: FlxA-like protein
Probab=42.70 E-value=1.9e+02 Score=26.75 Aligned_cols=63 Identities=27% Similarity=0.456 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
-..|++.+..|+++|++-.. ...+|++++. .-+.+|...|.-|+.+|..|+.+..++...
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577788888888764321 1346666664 556777888888888888888877777654
Q ss_pred hcC
Q 004320 703 HYG 705 (761)
Q Consensus 703 ~~~ 705 (761)
...
T Consensus 81 ~~~ 83 (106)
T PF14282_consen 81 KQS 83 (106)
T ss_pred ccc
Confidence 433
No 248
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.29 E-value=3.9e+02 Score=27.28 Aligned_cols=67 Identities=27% Similarity=0.286 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 615 ~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
.+..+..+-..|+.+...|++++.+=+.-...++.... ...-.+......+|..|++.-..|+.
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~----------------e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE----------------ELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777888888888888777666666666443 33445667788888888888888877
Q ss_pred HHH
Q 004320 695 QLN 697 (761)
Q Consensus 695 ~l~ 697 (761)
+|-
T Consensus 185 ~l~ 187 (189)
T PF10211_consen 185 QLE 187 (189)
T ss_pred HHh
Confidence 764
No 249
>PRK03918 chromosome segregation protein; Provisional
Probab=42.12 E-value=4.2e+02 Score=33.13 Aligned_cols=12 Identities=0% Similarity=-0.127 Sum_probs=5.8
Q ss_pred ccchhhhccccc
Q 004320 311 PSAVAACMAPLL 322 (761)
Q Consensus 311 a~NLAivfaP~L 322 (761)
..+..+.|.|.+
T Consensus 14 ~~~~~i~f~~g~ 25 (880)
T PRK03918 14 HKSSVVEFDDGI 25 (880)
T ss_pred ccCceEecCCCc
Confidence 333445666533
No 250
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.07 E-value=3e+02 Score=27.04 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=58.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 004320 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDL-RAALEVG 650 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~---~~~r~~Le~~V~~Lq~~L~~e~~~-~~~Le~~ 650 (761)
-++...++.|=..+..|...++-+.++-+-||+.+++-...+ .++-..||+.+..++.+..++..= |-+|.-+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 456677788888889999999999999999999888665544 556777999999999998877655 7777654
No 251
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.03 E-value=89 Score=38.49 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
++|-..++.|+.++..+++++..
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~ 364 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSA 364 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444433
No 252
>PRK02224 chromosome segregation protein; Provisional
Probab=41.79 E-value=3.2e+02 Score=34.28 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=8.1
Q ss_pred cChHHHHHHHHHH
Q 004320 108 ETSEDLYEWKTAL 120 (761)
Q Consensus 108 eSeeE~~eWI~AL 120 (761)
....+...|+..|
T Consensus 109 ~~~~~~~~~i~~l 121 (880)
T PRK02224 109 DGARDVREEVTEL 121 (880)
T ss_pred cChHHHHHHHHHH
Confidence 3455667776665
No 253
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=41.65 E-value=1.6e+02 Score=29.64 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=46.5
Q ss_pred hhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 004320 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA----LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (761)
Q Consensus 606 ~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~----Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~ 681 (761)
+.|++..++=+.....-|..|.+|+.+|+.-++-+.+++.. ....++.. |-.=-..+=.||+-|..+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k---------i~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK---------IQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 34666666666667777778888888888877766665542 11222211 111113456778889999
Q ss_pred HHHHHHHHH
Q 004320 682 VARLKQKVA 690 (761)
Q Consensus 682 v~~Le~~~~ 690 (761)
|..++.++.
T Consensus 147 iE~~K~~~l 155 (177)
T PF07798_consen 147 IESLKWDTL 155 (177)
T ss_pred HHHHHHHHH
Confidence 888776643
No 254
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.44 E-value=5.7e+02 Score=31.30 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=73.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh---h----hhhhhhhHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 582 LAIQRLEITKNDLRHRIAKEAR---G----NAILQASLERRKQ------ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~---~----~~~lq~~~~~~k~------~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
..||.||-.+..+-.++. |++ . +.+||.-+++=.. .++.+-+-||-++..|+.+|+....++.-+-
T Consensus 248 dqlqel~~l~~a~~q~~e-e~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~ 326 (716)
T KOG4593|consen 248 DQLQELEELERALSQLRE-ELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMG 326 (716)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 346666666555555443 333 2 3456665554333 3455567799999999999999887776521
Q ss_pred -------------------HhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 649 -------------------VGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 649 -------------------~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
..++....++..|..+|.++..+|.|.-.==+.+.-.+.++.+|+-.|
T Consensus 327 ~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl 393 (716)
T KOG4593|consen 327 SLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETL 393 (716)
T ss_pred ccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 234444557788999999999988876554455555666666666553
No 255
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=41.18 E-value=4.4e+02 Score=33.70 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 673 EEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
.++.-++.++..++.++..+..+|.
T Consensus 915 ~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 915 RELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 256
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.02 E-value=4e+02 Score=34.99 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred cccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHH
Q 004320 558 AFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKE 601 (761)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (761)
++||-.=.-..+. .-||.-++|.+-++|+.....|+.-.++.
T Consensus 582 slyGl~LdL~~I~--~pd~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 582 SLYGLSLDLSAID--VPDYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred ccceeEeehhhcC--CchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 7788653222222 22455677777788887777776655443
No 257
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=41.01 E-value=3.4e+02 Score=30.34 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHH
Q 004320 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (761)
Q Consensus 599 ~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~ 678 (761)
++---+|+-||..|..-++ + .-+-|.|...|-..|.++.....+|..--. .++..++.+=.+-|
T Consensus 137 ~~~~EEn~~lqlqL~~l~~---e-~~Ekeeesq~LnrELaE~layqq~L~~eyQ---atf~eq~~ml~kRQ--------- 200 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQ---E-CGEKEEESQTLNRELAEALAYQQELNDEYQ---ATFVEQHSMLDKRQ--------- 200 (401)
T ss_pred HHHHHHHHHHHHhHHHHHH---H-HhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccchhhhHHHH---------
Confidence 3333568888888764332 2 234567788888888888877777765433 45555544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004320 679 EADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 679 E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+-|.+||.||.+|-+.+..--+
T Consensus 201 -~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 201 -AYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887776655444
No 258
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.96 E-value=2.1e+02 Score=38.36 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~ 653 (761)
-..|++....|+..|+.++...+.|..+-..
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~ 545 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKR 545 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458889999999999999999999987653
No 259
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=40.62 E-value=5.1e+02 Score=28.08 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=49.5
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
+|+....+.+.....+.+|+.++..+++++..-...-..=..+- .-+-...--+..++.-+.+...+.++..+..
T Consensus 129 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~ 203 (301)
T PF14362_consen 129 VQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQA 203 (301)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666666666666666655443322222211 1111233446777878888888888888888
Q ss_pred HHHHHHHHHH
Q 004320 688 KVAELHHQLN 697 (761)
Q Consensus 688 ~~~~l~~~l~ 697 (761)
+......+|.
T Consensus 204 ~~~~~~~~l~ 213 (301)
T PF14362_consen 204 QIDAAIAALD 213 (301)
T ss_pred hHHHHHHHHH
Confidence 8777777776
No 260
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=40.60 E-value=3.3e+02 Score=32.71 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=82.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004320 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLSMSSGQ 657 (761)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V-~~Lq~~L~~e~~~~~~Le~~l~~~~~~ 657 (761)
+=+..|.||+....+++.+|..-+..|..==...-.+-+.+.++-.+|..|+ .-|+... +..++..|..+..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~--~~~i~~~l~~a~~----- 83 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEI--ENEIQPQLRDAAE----- 83 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHH-----
Confidence 3467899999999999999887777776522223344556677788888888 4444433 3334555555443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCccccccccccccccccccccc-ccccCccc
Q 004320 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH-HYGSLSDACDRYQNVQNHNSQQSFS-SNIFNLPI 735 (761)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 735 (761)
+.+.|-.|++-.+.-+.-|| ++..++.+|.+-+.. ..+...++...-..... ..+.. ...++.+.
T Consensus 84 ---------e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~---~L~~l~~~~~~~~~ 150 (593)
T PF06248_consen 84 ---------ELQELKRELEENEQLLEVLE-QLQEIDELLEEVEEALKEGNYLDAADLLEELKS---LLDDLKSSKFEELK 150 (593)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HHHhcCcCcccccH
Confidence 44555566665555555454 566666666443321 11222222221111111 11111 22344456
Q ss_pred cchhhHHHHHHHHHhh
Q 004320 736 RLPFLAFQYLVLKLTI 751 (761)
Q Consensus 736 ~~~~~~~~~~~~~~~~ 751 (761)
.++.|.-+|.+++=.|
T Consensus 151 i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 151 ILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777665443
No 261
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.60 E-value=8.4e+02 Score=30.59 Aligned_cols=133 Identities=11% Similarity=0.187 Sum_probs=81.5
Q ss_pred cccccchHHHhhhcCCCcHHHHHHHHHHHhc--C---CCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhH
Q 004320 164 LVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (761)
Q Consensus 164 ~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~--G---l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslL 238 (761)
..|-.+|-.++.....+-.++.++|.++... + .+.+..|-.+-+...++.++-.+-.. +....+++.|--=|
T Consensus 321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHH
Confidence 3455566666666667778888888877753 2 44556677888888888887766432 11122333333334
Q ss_pred HHhhhcCCCC-----------------CCChhhHHHHHHHHhcCCH---HHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Q 004320 239 KHVLRELPSS-----------------PVPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMMH 298 (761)
Q Consensus 239 K~fLReLPeP-----------------Llp~~ly~~ll~~~~~~~~---e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~ 298 (761)
+.|.+.-+.. =++..|...++......+. .+.+..||.+| +.=|..|..+|.+|..+|.
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLLD 476 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHhh
Confidence 4444444421 1234455555665554432 35567788855 6889999999999999886
Q ss_pred HH
Q 004320 299 TI 300 (761)
Q Consensus 299 ~V 300 (761)
.+
T Consensus 477 ti 478 (968)
T KOG1060|consen 477 TI 478 (968)
T ss_pred hh
Confidence 54
No 262
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=40.49 E-value=1.2e+02 Score=34.99 Aligned_cols=64 Identities=30% Similarity=0.340 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHH-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 004320 587 LEITKNDLRHRIAKEARGNAILQASLER-RKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~lq~~~~~-~k~~~~~~r~~Le~~V-~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
.|..+++.|.-+ |-|-.||-+|..--. -|..|+--++. |+|| +.|++||+.|+++|.+++.-|.
T Consensus 501 ~eTll~niq~ll-kva~dnar~qekQiq~Ek~ELkmd~lr-erelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQEKQIQLEKTELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666654 445678877743110 11122111111 2333 4588899999999999888775
No 263
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.32 E-value=1.4e+02 Score=30.20 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=22.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
.+..|..-+.+++..|++.+++|+++|..
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777888888888888888887754
No 264
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=40.27 E-value=4.1e+02 Score=31.37 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHH
Q 004320 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIAL 677 (761)
Q Consensus 599 ~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~ 677 (761)
.++.+..-.+|--++.-|..++..+.+|.+==.+-++-||.-..+..-|..+... +.+. .+.. ..--+|=.|...
T Consensus 210 ~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~--~el~~l~~E~~~ 285 (511)
T PF09787_consen 210 IEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNS--IELEELKQERDH 285 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccch--hcchhhHHHHHH
Confidence 3344444445555555555555556666555555666666666666666662211 1111 0111 222355677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 678 AEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 678 ~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
+.+++..|+.|+..|+.++.+....
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777555543
No 265
>PLN02678 seryl-tRNA synthetase
Probab=40.12 E-value=83 Score=36.55 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
-.+|.++-.+|+.+++.=+.-|..+...+.... .-...+.+|++++..|-++|..||.++..+..+|.+..
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-------~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-------IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444442100 00134567888888888888888888888888887765
No 266
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.05 E-value=95 Score=30.82 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=44.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH-----HHHHHHHHHHHHHHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~-----~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
.+..|+..-.+|+.++..--+.+..|++.|..-.. .+...-.+|++++..|+.+|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777888888888888888888888776665 4467777888888888888864
No 267
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.57 E-value=5.6e+02 Score=33.43 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCC
Q 004320 580 EELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--RDLRAALEVGLSMS 654 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e--~~~~~~Le~~l~~~ 654 (761)
.++....|++-..-|..++ ..|.-+|..+|.=+..|..-...+-..||+++..||.++..- .....+++.+....
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~ 250 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA 250 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555444444444 346678888888888777777777788999999999888652 22333444443310
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 655 SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 655 ~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
. -...+|+..+++++.-..|=.++...-++++.|
T Consensus 251 ~----~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 251 E----QSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred H----hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112345556666644444444444444443333
No 268
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=39.38 E-value=68 Score=37.87 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=44.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 004320 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~---~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
-|-+.||||-.++.+=--+|.|||-.++.+|++ +.++--+||.|+++++..+..
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999988889999999999999885 577778888888888776543
No 269
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.38 E-value=6.7e+02 Score=29.10 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
++|...++.++.++.-|+.++..|+.++.+.+.
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777777777766666666555443
No 270
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.27 E-value=80 Score=36.77 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=42.2
Q ss_pred ccCCCCchHHHHHHHhhhhh---HHHHHHHHHHhhhhhhhhhhHH---HhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lq~~~~---~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
.-||-..++-...-+|+... .+|+.+|+++ +..++ ++++.+.++=.+||.|+.+|+.|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666554 7888888876 34444 556667777778999999999998
No 271
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.25 E-value=1.3e+02 Score=26.47 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
...+.++.++|+--+-+...++..|-.=-.+-..-+..-|.||.+|+.+|+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477788888888888888888877766666666777888888888888853
No 272
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=38.97 E-value=4.9e+02 Score=33.35 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=8.6
Q ss_pred cHHHHHHHHHHHhcCCCc
Q 004320 181 PSFLEKALRFLEKFGTKV 198 (761)
Q Consensus 181 P~il~~~i~~L~~~Gl~~ 198 (761)
|.-...+..++...|+..
T Consensus 116 ~~~~~~~~~~l~~~~~~~ 133 (1164)
T TIGR02169 116 RVRLSEIHDFLAAAGIYP 133 (1164)
T ss_pred cccHHHHHHHHHHcCCCc
Confidence 333445555555555433
No 273
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.88 E-value=2.8e+02 Score=30.92 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 619 LHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 619 ~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
..+.+.-|+++|.+++++|.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ 188 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNA 188 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888888888864
No 274
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.85 E-value=3.9e+02 Score=32.23 Aligned_cols=87 Identities=26% Similarity=0.386 Sum_probs=47.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (761)
-.|.+++.+=..|+ .+|..|++.++..|......+..|++=-.+....++..+.+
T Consensus 422 ~~i~~~~~~ve~l~-------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei------------------ 476 (652)
T COG2433 422 KRIKKLEETVERLE-------EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI------------------ 476 (652)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------------------
Confidence 34445554444444 56778888888777666555555544444444444444433
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
+++-.+|..||-++.+=+..+..|...|.+-+
T Consensus 477 -------~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 -------RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554
No 275
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=4e+02 Score=30.92 Aligned_cols=129 Identities=19% Similarity=0.290 Sum_probs=79.3
Q ss_pred ccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhh-----hhhhhhhHHHhhH-------HHH-HHHHHHHHHHHHHHHHHH
Q 004320 572 ESIDSSGEEELAIQRLEITKNDLRHRIAKEARG-----NAILQASLERRKQ-------ALH-ERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~lq~~~~~~k~-------~~~-~~r~~Le~~V~~Lq~~L~ 638 (761)
+.++--.+-|+-.++|+..-..++.+|-.=.+- =+.||..+.=|+. +.+ .+-.+||||+.-+-++.+
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777888887777777666221110 1122222222221 001 223468999998888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 639 AERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 639 ~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
.-..+++-|-++|..-+-.++ --..-.-.+|+..+|--.++||.+.=..--+|+.|++.+-.
T Consensus 363 ~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888763211111 00122346889999999999999988888888888776543
No 276
>PRK02224 chromosome segregation protein; Provisional
Probab=38.77 E-value=3.5e+02 Score=33.86 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=26.4
Q ss_pred HHHHHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 582 LAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~---~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
..|..++..+..|+..| .+++...+...+.++.++..+..+...|++....++.+|.
T Consensus 279 ~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~ 338 (880)
T PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 2222222333344455555555555556666555554444
No 277
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.75 E-value=1.1e+02 Score=25.59 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~ 693 (761)
++.|+.||+++|.+=..--..++.-|++..-.-.-|..+= ...-+-++-++.++..|++.+..|+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVv---e~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVV---EKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHH---HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677777777777655555555555543311111233222 3334445566777888888777663
No 278
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=38.64 E-value=2.2e+02 Score=36.89 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
...+.-+|.+||.+|++|.+-|..+.+-|.
T Consensus 751 ~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 751 KDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 345788999999999999999999999886
No 279
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.51 E-value=33 Score=42.13 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~----~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
++++.+++..|..|.+.|..-......++..+........ ....+..+...|-.+|..||.++.+|++++..|..+
T Consensus 453 ~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 453 DEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666665555554455544432211111 112344566678889999999999999999999999
Q ss_pred HHH
Q 004320 696 LNQ 698 (761)
Q Consensus 696 l~~ 698 (761)
|.+
T Consensus 533 l~~ 535 (722)
T PF05557_consen 533 LEK 535 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 280
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.46 E-value=3.6e+02 Score=32.78 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=55.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (761)
..|+.|+....+++.+|++--..=..++..+ ..+.+....|+.++.+++++..+...+..+++.|
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 485 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQL----ETLKEAIEALRKTLDEKTKQKINAFELERAITIA----------- 485 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------
Confidence 3677888888888777763222222222222 2333444455555556655555555555555443
Q ss_pred CCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 662 RGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 662 ~~~p~~~~~ll~eia--~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
.+++++|.++. +.+.-+..||..+.+.-.+|.+.
T Consensus 486 ----~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 486 ----DKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23466666553 34444667777877777777664
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.00 E-value=4.5e+02 Score=27.78 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
+.|=-|.+.||+..-+|+.+|..|+.++.
T Consensus 173 k~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 173 KRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 44445556666666666666666665543
No 282
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.91 E-value=2.8e+02 Score=25.73 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
+..+.+.++++-..|.+...+|+.++.+=..+...|+..-
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777778888888888888888888888765
No 283
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.72 E-value=4.2e+02 Score=29.54 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
++.++++.++.++..++.++..++.+|.
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555566666666666665555554
No 284
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=37.64 E-value=6.1e+02 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRA 645 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~ 645 (761)
.+++..-+|..-...|+.++...+.+..
T Consensus 169 ~l~~~~~~l~~~~~~L~~e~~~L~~~~~ 196 (312)
T smart00787 169 LLNSIKPKLRDRKDALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444444445544444444443
No 285
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.58 E-value=2.4e+02 Score=34.84 Aligned_cols=20 Identities=45% Similarity=0.498 Sum_probs=15.0
Q ss_pred HHHHHHhhhhhHHHHHHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAK 600 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~ 600 (761)
+..|+.|.....+|+.+++.
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~ 306 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIAD 306 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877764
No 286
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.50 E-value=1.4e+02 Score=29.26 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
.+..+-..||.+|.+|+.+|..=...-..-+.... .+-.|=.-|.+||.++...+..+......|.
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~--------------~~E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS--------------NAEQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666543322222221111 1124445567777777777777766666554
Q ss_pred H
Q 004320 698 Q 698 (761)
Q Consensus 698 ~ 698 (761)
+
T Consensus 105 e 105 (143)
T PF12718_consen 105 E 105 (143)
T ss_pred H
Confidence 3
No 287
>PRK12704 phosphodiesterase; Provisional
Probab=37.34 E-value=5.1e+02 Score=30.78 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004320 674 EIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~ 707 (761)
+|.-.+.++..+++++..+..+..++-..-.|-+
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555555566666666655555555444433
No 288
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.26 E-value=3.7e+02 Score=25.58 Aligned_cols=46 Identities=33% Similarity=0.466 Sum_probs=22.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
+.+|+..|..|...|.+=.+.|..+++. ..+-..|++++..|+.+.
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~~~--------~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELRAL--------KKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444322 223334555555555543
No 289
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=37.24 E-value=27 Score=41.52 Aligned_cols=154 Identities=14% Similarity=-0.009 Sum_probs=95.3
Q ss_pred CCCCCCCcccccchHHHhhhcC-----CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHh-cC-CccCCCCC
Q 004320 157 DKRPVKSLVVGRPILLALEDID-----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYE-QG-KTEFSADE 229 (761)
Q Consensus 157 ~k~~~~~~vFGvpL~~ll~~~~-----~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld-~g-~~~~~~~~ 229 (761)
...+.+..+|+ .|........ -.+.-..+|..+....+....|.|+.+| ..+..++..-+ .+ ++....+.
T Consensus 31 ~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~ 107 (577)
T KOG4270|consen 31 VVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQ 107 (577)
T ss_pred ccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCc--chhhhhhchHHhhcCccccCcch
Confidence 34556666777 5555443211 1255567888888888999999999999 33444444333 33 46667778
Q ss_pred CccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHH----HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q 004320 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKE----ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH 305 (761)
Q Consensus 230 D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e----~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~ 305 (761)
..+++.++.+.+++.+ ++.++.-|+..+......... ....+++. .-.|..|+ +-+++.||... .
T Consensus 108 ~~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~ 176 (577)
T KOG4270|consen 108 RHADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----R 176 (577)
T ss_pred hhhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----h
Confidence 8999999999999999 777766666544432221111 12334443 35677777 66666666654 3
Q ss_pred cCCCCccchhhhccccccC
Q 004320 306 ENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 306 ~NkMta~NLAivfaP~Llr 324 (761)
.+.|.=.+...+|.++--.
T Consensus 177 l~~e~Gl~eEGlFRi~~~~ 195 (577)
T KOG4270|consen 177 LLLEGGLKEEGLFRINGEA 195 (577)
T ss_pred hhhhcCccccceeccCCCc
Confidence 4455555555666655443
No 290
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=37.21 E-value=1.4e+02 Score=28.26 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAEADVARLKQKVAELH 693 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~ 693 (761)
||..|+..|..||.++..|.
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777777664
No 291
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=37.13 E-value=5.5e+02 Score=32.94 Aligned_cols=19 Identities=0% Similarity=-0.193 Sum_probs=10.8
Q ss_pred ccccCCCHHHHHHHHHHHh
Q 004320 201 ILRQAADVEEVDRRVQEYE 219 (761)
Q Consensus 201 IFR~sg~~~~v~~L~~~ld 219 (761)
.|+++|.......+...+.
T Consensus 109 ~~~~n~~~~~~~~~~~~l~ 127 (1164)
T TIGR02169 109 YYYLNGQRVRLSEIHDFLA 127 (1164)
T ss_pred eEEECCccccHHHHHHHHH
Confidence 4666666555555555554
No 292
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=36.82 E-value=3.9e+02 Score=28.94 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~ 704 (761)
+++.+.++-+..+..+|+.++.+.+.....+|+...
T Consensus 205 ~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~ 240 (264)
T PF07246_consen 205 EELEARESGLRNESKWLEHELSDAKEDMIRLRNDIS 240 (264)
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455566666666666777666666666666665433
No 293
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=36.66 E-value=5.3e+02 Score=29.97 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=56.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhh-----hhhhHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAI-----LQASLERRKQALHERRL------------ALEQDVSRLQEQLQAERDL 643 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lq~~~~~~k~~~~~~r~------------~Le~~V~~Lq~~L~~e~~~ 643 (761)
+..+..=|..=|+|-+|+++++=.-|. .+..+..-+.++.++|. .+-+-|.+||.||-+.+.=
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777776554433322 12222223334444432 2446788999999888777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 644 RAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (761)
Q Consensus 644 ~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~ 690 (761)
...|...+... .|.+..|=.+|+.||..|..+..++.
T Consensus 302 L~~L~~~~~p~----------sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 302 YAQLMVNGLDQ----------NPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHhhcCCC----------CCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 77676654422 13445566666666666666666664
No 294
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=36.61 E-value=5.9e+02 Score=30.20 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 617 QALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 617 ~~~~~~r~~Le~~V~~Lq~~L 637 (761)
....++|.++|+++...+++|
T Consensus 58 eE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777766655555
No 295
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.55 E-value=3.8e+02 Score=32.42 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLKQKVA 690 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~ 690 (761)
.++..+.+|..+..++-.++..+.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555553
No 296
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.53 E-value=1.5e+02 Score=29.50 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 625 ~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
.|..|+.+|..|.+.|+.+|...|.-+..- -..+-..+++|..=|+.||+++-.|+.++..+..+.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456677777777777877777666422100 012334567777777777777777777666665543
No 297
>PRK11281 hypothetical protein; Provisional
Probab=36.47 E-value=3.8e+02 Score=34.89 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=35.8
Q ss_pred HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 599 ~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
..|..+|..||.=+..|+.-...+-..+|+.|..||..+.+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999998888888888888899999999998876
No 298
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.44 E-value=4.9e+02 Score=26.72 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=48.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~--r~-~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
+|+..+..+.+|+...+.=-+--+-|+-+.+.||...++. |. +|+++..-|+++ ++.+|.-|..-
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~---~e~lr~el~k~ 142 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI---LESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 6777888888888888766666678999999999876543 55 888888888883 44566655553
No 299
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.35 E-value=4.2e+02 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004320 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~ 704 (761)
-++..++.+..-|+.++.....+|.+-|.-|.
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444555555566666666666666665443
No 300
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=36.32 E-value=4.8e+02 Score=27.55 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=55.9
Q ss_pred hhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHH---
Q 004320 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA-LEVGLSMSSGQFSSSRGMDSKTRAELEEIALA--- 678 (761)
Q Consensus 603 ~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~-Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~--- 678 (761)
|-...||+...+|-...+.-+..+|+.+..++..++.+..-+.. +..++.. +-..++.=...+=.|.+-.
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~------L~~ri~~L~~~i~ee~~~r~~~ 118 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDS------LNDRIEALEEEIQEEKEERPQD 118 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHH
Confidence 55667888888888888888888888888888888887765432 2222210 0111222222222222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004320 679 -EADVARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 679 -E~~v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
|.--..|..+|.+|+..+..||..+
T Consensus 119 ie~~~~~l~~~l~~l~~~~~~Er~~R 144 (247)
T PF06705_consen 119 IEELNQELVRELNELQEAFENERNER 144 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222346777777777777777654
No 301
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=36.28 E-value=16 Score=29.32 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.5
Q ss_pred CCCcEEEEEEEeCCeEEEEcCC
Q 004320 34 WKSWKKRWFILTRTSLVFFKND 55 (761)
Q Consensus 34 ~k~WKKRWfVL~~~~L~yYKd~ 55 (761)
.+.|.|.|.++.+.+|.+||--
T Consensus 27 Vr~wEKKWVtv~dtslriyKWV 48 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKWV 48 (52)
T ss_pred HHHHhhceEEeccceEEEEEEE
Confidence 5679999999999999999864
No 302
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.12 E-value=7.8e+02 Score=29.47 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALH 620 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~ 620 (761)
+..+++.+--+.+|......=-+.+..||..+++-+..+.
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666664443333334444444444444443
No 303
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.11 E-value=3.8e+02 Score=27.63 Aligned_cols=76 Identities=25% Similarity=0.233 Sum_probs=48.3
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~----------~~~r~~Le~~V~~Lq~~L~~e~~~~~~L 647 (761)
.+.|.---+||+-|.-+...|+.--..=+-||+.|..++... +.-=.+|+.+-..+|.||.+=..==..|
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778999999999999765555566999988776633 1112235555556666665433333445
Q ss_pred HHhhcC
Q 004320 648 EVGLSM 653 (761)
Q Consensus 648 e~~l~~ 653 (761)
+...+.
T Consensus 181 q~q~~~ 186 (192)
T PF11180_consen 181 QRQANE 186 (192)
T ss_pred HHHhcC
Confidence 555543
No 304
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.97 E-value=8.3e+02 Score=31.35 Aligned_cols=115 Identities=23% Similarity=0.195 Sum_probs=68.6
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHhhhhhh-------hhhhHHHhhHHH--HHHHHHHHHHHHHHH--H--HHHHHHHH
Q 004320 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAI-------LQASLERRKQAL--HERRLALEQDVSRLQ--E--QLQAERDL 643 (761)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------lq~~~~~~k~~~--~~~r~~Le~~V~~Lq--~--~L~~e~~~ 643 (761)
|-.-|+-|+|+-..--+-+.+|..+.+.+.- |+.-=...++.. |.+++--..++.-|. + |+.-|..+
T Consensus 59 cp~kelfi~riq~ldlete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~ 138 (1195)
T KOG4643|consen 59 CPTKELFIQRIQILDLETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIA 138 (1195)
T ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888999888888888888665555543 333323333444 666655444443322 2 33344444
Q ss_pred HHHHH-HhhcCCC------C-CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 644 RAALE-VGLSMSS------G-QFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 644 ~~~Le-~~l~~~~------~-~~~~~-~~~p~~~~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
-.-|+ +|++... + ....| ...-.+-.+|=.|||.+|+-|..|++++.+
T Consensus 139 e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEE 195 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEE 195 (1195)
T ss_pred HHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5665431 1 22244 334556778889999999999999887754
No 305
>PRK09039 hypothetical protein; Validated
Probab=35.96 E-value=2.2e+02 Score=31.95 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=17.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE 613 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~ 613 (761)
+.++.+|+.-=.+|-.-+.-|-..++-||..+.
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555555555555555443
No 306
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=35.95 E-value=5.3e+02 Score=26.91 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
|-.+-++++.-..-+|.++..||++|..|+.+..++
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999998876544
No 307
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.72 E-value=3.1e+02 Score=29.56 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 673 EEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.+|.-+|++|..|+..|..|+.+...=|
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 4566667777777777776666655333
No 308
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=35.27 E-value=4.5e+02 Score=32.15 Aligned_cols=112 Identities=25% Similarity=0.267 Sum_probs=67.5
Q ss_pred CCcccccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH--HHHHHHHHHHHHHH
Q 004320 554 AKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ--ALHERRLALEQDVS 631 (761)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~--~~~~~r~~Le~~V~ 631 (761)
+++++.|-| ++--+-+||--..+-|+.-.-.| +| .-|--|..|=. ...-.-.-|++|-.
T Consensus 654 ~~~~tawer----------------eE~~l~~rL~dSQtllr~~v~~e-qg--ekqElL~~~~~l~s~~~q~sllraE~~ 714 (961)
T KOG4673|consen 654 SKAATAWER----------------EERSLNERLSDSQTLLRINVLEE-QG--EKQELLSLNFSLPSSPIQLSLLRAEQG 714 (961)
T ss_pred hhhhhHHHH----------------HHHHHHHhhhhHHHHHHHHHHHH-hh--hHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 466777766 34456677776666666555444 11 11111111111 11112234788889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 632 RLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 632 ~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+|+++|.+|++--+-++.-+ ..+=+||..++..++.||+.+..++..+.|+-+
T Consensus 715 ~l~~~le~e~nr~~~~~~e~-----------------~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq 767 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEY-----------------LAAQEEADTLEGRANQLEVEIRELKRKHKQELQ 767 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988666554422 234467888888888888888887777776654
No 309
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.26 E-value=6.3e+02 Score=31.44 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+-+.|=-|+..|-..+--|++++.+.+..+.-+++
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 33444445555555555555555555555444443
No 310
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=35.18 E-value=1.2e+02 Score=27.49 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhc
Q 004320 623 RLALEQDVSRLQEQLQA------ERDLRAALEVGLS 652 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~------e~~~~~~Le~~l~ 652 (761)
...|+.++++||+||.. |+=-|.||+.+|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 46788899999998864 6666777777764
No 311
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=34.81 E-value=2.6e+02 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=31.2
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
..+.|.+.+. .++.-|.+++..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4466777652 6789999999999999999999998754
No 312
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.69 E-value=8.5e+02 Score=30.03 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhh
Q 004320 664 MDSKTRAELEEIALAEAD--------------VARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~--------------v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
+.+..++|..+++.++.+ |..|+.++.+|+.++.+|...-
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~ 339 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKI 339 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888764 5667778888888877766543
No 313
>PRK03918 chromosome segregation protein; Provisional
Probab=34.66 E-value=5.3e+02 Score=32.20 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 624 LALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
..++..+..|+..+++...++..++
T Consensus 348 ~~~~~~~~~l~~~~~~l~~~~~~~~ 372 (880)
T PRK03918 348 KELEKRLEELEERHELYEEAKAKKE 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667776666666666554
No 314
>PLN02320 seryl-tRNA synthetase
Probab=34.28 E-value=2.2e+02 Score=33.72 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
..+.+|++|+..|-.++..||+++..+..+|.+.-.
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888888877663
No 315
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.14 E-value=6.3e+02 Score=33.56 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
..|.+..++-.++..++.++..|+.++..+..++...++
T Consensus 967 ~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~k 1005 (1311)
T TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777776677777777776666666665554
No 316
>PRK14127 cell division protein GpsB; Provisional
Probab=34.06 E-value=66 Score=30.12 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
.++..|++-|++++.+|++++.+++.++..
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445556667777777777777777776663
No 317
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=33.85 E-value=6.6e+02 Score=32.09 Aligned_cols=10 Identities=0% Similarity=-0.366 Sum_probs=4.8
Q ss_pred ccccCCCHHH
Q 004320 201 ILRQAADVEE 210 (761)
Q Consensus 201 IFR~sg~~~~ 210 (761)
.|+++|....
T Consensus 111 ~~~~~~~~~~ 120 (1179)
T TIGR02168 111 EYFINGQPCR 120 (1179)
T ss_pred eeeECCCccc
Confidence 4555554433
No 318
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.78 E-value=6.5e+02 Score=32.96 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhh-------hhhhHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAI-------LQASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRA 645 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~-------lq~~~~~~k~~~~~~---r~~Le~~V~~Lq~~L~~e~~~~~ 645 (761)
.|+++|.....++.++..-.+.... ++..++.++..+..+ ..+|++.+..+.+...+....+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666444333333 334444444444443 44445555555544444444444
No 319
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.70 E-value=1.4e+02 Score=25.90 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (761)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~~~~l~ 693 (761)
.+++.++.-|++|..+|..|+++...|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788899999999999999999855554
No 320
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.52 E-value=2.3e+02 Score=33.07 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
+++-.|+..|..++..|...+.+|+.||..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677778888888999999999999888853
No 321
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.33 E-value=5.1e+02 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 675 IALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 675 ia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
++.++.++..||+++..+...+.+-++
T Consensus 451 lee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 451 EQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555443
No 322
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=33.09 E-value=7.2e+02 Score=27.64 Aligned_cols=113 Identities=26% Similarity=0.260 Sum_probs=72.8
Q ss_pred CcccCCCCchHHHHHHHhhhhh--HHHHHHHHHHhhhhhh--hhhhH-------HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 570 SVESIDSSGEEELAIQRLEITK--NDLRHRIAKEARGNAI--LQASL-------ERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--lq~~~-------~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.-|.-|.|.---++|+-=|+++ .++|...+.+||.|=+ ||..- ...++.+..||++ -.-+.++-+
T Consensus 96 gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRld----yD~kkkk~~ 171 (366)
T KOG1118|consen 96 GKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLD----YDYKKKKQG 171 (366)
T ss_pred HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhH----HHHHHHHhc
Confidence 4456677777788888888877 5889999999999965 77762 2333344455544 444555555
Q ss_pred H--HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 639 A--ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 639 ~--e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
+ |.+||.|||.-=+ ++-.+.-.=++++|.||...+|=+.-+..||.=.
T Consensus 172 K~~dEelrqA~eKfEE-------------SkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfh 221 (366)
T KOG1118|consen 172 KIKDEELRQALEKFEE-------------SKELAEDSMFNLLENDVEQVSQLSALIQAQLDFH 221 (366)
T ss_pred cCChHHHHHHHHHHHH-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 5 8999999987322 1112222236677888777777666666655433
No 323
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.83 E-value=88 Score=27.55 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=29.2
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh----hhhhhHHHhhHHHHHH
Q 004320 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~lq~~~~~~k~~~~~~ 622 (761)
-|+|||.-|.++...| -.||||+- ++-.-+.-||....+|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899884 4555566666655444
No 324
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=32.63 E-value=2.8e+02 Score=29.88 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=36.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (761)
Q Consensus 614 ~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~ 693 (761)
|+|.+...+|.-+-+-+++|+++- +.|..+..-|+.++.+|..+|.+++
T Consensus 213 rnreaa~Kcr~rkLdrisrLEdkv-------------------------------~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 213 RNREAASKCRKRKLDRISRLEDKV-------------------------------KTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------------------------------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 455666667766666677766543 3444555567777888888888777
Q ss_pred HHHHHHH
Q 004320 694 HQLNQQR 700 (761)
Q Consensus 694 ~~l~~~~ 700 (761)
+++-+.-
T Consensus 262 ~~V~~hi 268 (279)
T KOG0837|consen 262 QKVMEHI 268 (279)
T ss_pred HHHHHHH
Confidence 6665443
No 325
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.30 E-value=5.1e+02 Score=27.45 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ-LNQQR 700 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~-l~~~~ 700 (761)
+.+|.+|=..+-++|+.=-.=...||..+..+. ..-......|..+.+++..|+.+|+.++.. |+...
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~----------~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAE----------SERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344555555555555332111223555543211 123456778888889999999999999888 65544
No 326
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.28 E-value=4e+02 Score=30.97 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=28.3
Q ss_pred hhhhhhhhHH----HhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004320 604 GNAILQASLE----RRKQALHERRLALEQDVSRLQEQLQA-ERDLRAA 646 (761)
Q Consensus 604 ~~~~lq~~~~----~~k~~~~~~r~~Le~~V~~Lq~~L~~-e~~~~~~ 646 (761)
.|++.++.++ .|+.....-+.-|++++.+++++|.+ |..+...
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555444 45556666778899999999999874 4444443
No 327
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.23 E-value=5.7e+02 Score=26.23 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
.+.-.||+-++.++..+++.+.+...+-
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788888888888888888877653
No 328
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.19 E-value=2.5e+02 Score=30.03 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 625 ALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 625 ~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
+|+.+|..|+.+|++.+.|-.-||.=
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~D 28 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLEND 28 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666543
No 329
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=32.15 E-value=17 Score=35.52 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=22.0
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCC
Q 004320 34 WKSWKKRWFILTRTSLVFFKNDPSAL 59 (761)
Q Consensus 34 ~k~WKKRWfVL~~~~L~yYKd~~~s~ 59 (761)
++.|-|+|+++.+..|.+||--+-+.
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVPVt~ 53 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVPVTD 53 (165)
T ss_pred HHHHhhheEeecccceEEEEeeeccc
Confidence 56799999999999999999865444
No 330
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.54 E-value=5.2e+02 Score=32.26 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=28.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
+-|..|++||..+.+++.+..+ =+.+...+++.++.+.+.+.+|+++-.++.+++++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ 568 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEH----LEKLLKEQEKLKKELEQEMEELKERERNKKLELEK 568 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654421 11233334444444444444444444444444433
No 331
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.12 E-value=6e+02 Score=33.70 Aligned_cols=121 Identities=12% Similarity=0.201 Sum_probs=67.2
Q ss_pred CcccCCCCchHHHHHHHhhhhhHHHHHHHHH---Hhhhh------hhhhhhHHHhhHHH----------HHHHHHHHHHH
Q 004320 570 SVESIDSSGEEELAIQRLEITKNDLRHRIAK---EARGN------AILQASLERRKQAL----------HERRLALEQDV 630 (761)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~lq~~~~~~k~~~----------~~~r~~Le~~V 630 (761)
..++++....+...|.|+...-.+|+.+|.. ++.+. .-||..+..-+..+ .+.+..++.++
T Consensus 780 ~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI 859 (1311)
T TIGR00606 780 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777777777777742 22211 22444444333322 44566677778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 631 SRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 631 ~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
.+||.++.+-.+.+..|..++... ..|=+...+|-+++..+.++|..+++++..|+..+.
T Consensus 860 ~~Lq~ki~el~~~klkl~~~l~~r-------~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~ 919 (1311)
T TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRR-------QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 888777766666666666655421 123344455566666666666555555555554443
No 332
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=31.09 E-value=4.8e+02 Score=31.89 Aligned_cols=77 Identities=27% Similarity=0.372 Sum_probs=51.0
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHH---H-Hhh-cCCCCCCC------CC--CCCChhHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQE------QLQAERDLRAAL---E-VGL-SMSSGQFS------SS--RGMDSKTRAELEEIALAEADVARLK 686 (761)
Q Consensus 626 Le~~V~~Lq~------~L~~e~~~~~~L---e-~~l-~~~~~~~~------~~--~~~p~~~~~ll~eia~~E~~v~~Le 686 (761)
|..+|.+++. .+++|+++|+-= + .|| ....+++- .. ..--.+-++..+==+.||.++++|+
T Consensus 673 L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk 752 (786)
T PF05483_consen 673 LLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLK 752 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666654 577888887522 1 232 22223221 00 1123455677777889999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 004320 687 QKVAELHHQLNQQRQH 702 (761)
Q Consensus 687 ~~~~~l~~~l~~~~~~ 702 (761)
-.+.+|+.||-.+|.+
T Consensus 753 ~el~slK~QLk~e~~e 768 (786)
T PF05483_consen 753 NELSSLKKQLKTERTE 768 (786)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999975
No 333
>PRK11239 hypothetical protein; Provisional
Probab=30.94 E-value=75 Score=33.16 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
-+|-++|+.||++|+.|+.++..|..|+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555544
No 334
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.73 E-value=1.7e+02 Score=28.79 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=37.0
Q ss_pred hhhhHHHHHHH-HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004320 588 EITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALEV 649 (761)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~-~~~Le~ 649 (761)
-..-.+|+.+| +|..-=||.|++. .+=.++-.+|-+|+..|+.+|.+++.. +..++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~-----~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTAN-----PPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566555 6666666666654 233455678999999999999988753 333443
No 335
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=30.73 E-value=69 Score=37.25 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=42.1
Q ss_pred HHHHhhhhh--hhhh-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004320 598 IAKEARGNA--ILQA-SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (761)
Q Consensus 598 ~~~~~~~~~--~lq~-~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~ 656 (761)
|-+|+|+|- +||. ++---=-++...-.+|+||-++++++|.+|+..|+-||.-|-+..+
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l~ 658 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKMLK 658 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777763 3442 2222233667777789999999999999999999999987754433
No 336
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.68 E-value=3.7e+02 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
.=|.++..+-.+|..+|..+..++.+.......+..|..
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998888888777764
No 337
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.61 E-value=3.6e+02 Score=25.72 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=43.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
.|+.|..--.+++..|+.=-..-...++.|..-+..-.++|..|+.++..++.++..=..=..+|-.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445556666544444445666677777777888889999999998888765555555443
No 338
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.51 E-value=2e+02 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.+..+.+||..+|+||.-|..-|..-.
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999885543
No 339
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.46 E-value=3e+02 Score=27.37 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=50.5
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR---KQALHERRLALEQDVSRLQEQLQAERDL 643 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~---k~~~~~~r~~Le~~V~~Lq~~L~~e~~~ 643 (761)
.++|+...-||.-..++..++.-=|+-=..|++.++.. .+++.+++.++|.-+.+|+.-|......
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899988888888855555555566665544 4578999999999999999998876554
No 340
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.44 E-value=6.7e+02 Score=26.46 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.5
Q ss_pred HHHHhhhhhHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRI 598 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~ 598 (761)
.|+++|.-+.-|+..|
T Consensus 18 ~~dk~EDp~~~l~Q~i 33 (225)
T COG1842 18 LLDKAEDPEKMLEQAI 33 (225)
T ss_pred HHHhhcCHHHHHHHHH
Confidence 3444555444444444
No 341
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.41 E-value=1.4e+02 Score=25.00 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
.+.+|-..|+.|+.|++..+..=...|.|=+..
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777789999999999888888877776554
No 342
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.32 E-value=3.3e+02 Score=31.29 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+.+|++++..+-++|..||+++..+..++.+...
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999988888663
No 343
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.30 E-value=2.1e+02 Score=30.26 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--CC
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS--SS 661 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~--~~ 661 (761)
|.++...+.+|..+|..--+.-+.|+. ....+..+-..+++++++|++|+..-...+.-|.-.|......|. +-
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEV----YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444333333333333 233344445567777888888887777777666655544333231 12
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 004320 662 RGMDSKTRAELEEIALAEAD 681 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~ 681 (761)
..+|-...+=.+-|+-|...
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~ 139 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAM 139 (251)
T ss_pred cCCCCChHHHHHHHHHHHHh
Confidence 23343344444444444443
No 344
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.21 E-value=4.2e+02 Score=30.58 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
.+.+|++|+..+-.++..||+++..+..++.+...
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999888888764
No 345
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=30.18 E-value=4e+02 Score=32.21 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLK 686 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le 686 (761)
+-.+|++||.-|-.-.+-||
T Consensus 175 qKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 175 QKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHhHHHHHHHHhHHHHHHHH
Confidence 44567777766665555555
No 346
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.17 E-value=7e+02 Score=28.90 Aligned_cols=109 Identities=27% Similarity=0.306 Sum_probs=68.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhh---hhhHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAIL---QASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL-- 651 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---q~~~~~~k~---~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l-- 651 (761)
|=...||.|..--|||.|+.|+--+|... -..|||+-. .+.+-|.-+|.+-.+ + +=+.||.+|++|=
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--k---elE~lR~~L~kAEke 324 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--K---ELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--H---HHHHHHHHHHHHHHH
Confidence 34467889999999999997765554332 234444433 345556666666555 2 3356889998873
Q ss_pred -cCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 652 -SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 652 -~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
... ++-+-|...|..|.= .-|.||.+++.|-.+-..||...+
T Consensus 325 le~n-----S~wsaP~aLQ~wLq~--T~E~E~q~~~kkrqnaekql~~Ak 367 (575)
T KOG4403|consen 325 LEAN-----SSWSAPLALQKWLQL--THEVEVQYYNKKRQNAEKQLKEAK 367 (575)
T ss_pred HHhc-----cCCCCcHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 322 235567777888763 456677777777666666655444
No 347
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.15 E-value=2.1e+02 Score=31.06 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=49.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 610 ~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
..+++-|+...+|.+.||---+-||+|=++..+-+.-. .+|.+-...|. ....|...-+.|-.|+.+=|.-|..||.+
T Consensus 25 ~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~-s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQ 103 (307)
T PF10481_consen 25 QQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY-SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQ 103 (307)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 34566666667777777666666666666544433211 12222222222 22334555566677777777777777777
Q ss_pred HHHHHHHHHH
Q 004320 689 VAELHHQLNQ 698 (761)
Q Consensus 689 ~~~l~~~l~~ 698 (761)
+...+.+|..
T Consensus 104 l~s~Kkqie~ 113 (307)
T PF10481_consen 104 LNSCKKQIEK 113 (307)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 348
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.10 E-value=1e+02 Score=32.06 Aligned_cols=61 Identities=30% Similarity=0.434 Sum_probs=43.6
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH---------HHHHHHHHHHHHHHHHHHHHHH
Q 004320 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~---------~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
.|.|-.+--||..|+.|++.|.+= ..-+.|+-+||+-+. ..+|-=-.+.+||..|+.|+.-
T Consensus 123 ~e~EklkndlEk~ks~lr~ei~~~-~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~s 192 (220)
T KOG3156|consen 123 AENEKLKNDLEKLKSSLRHEISKT-TAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIES 192 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHHH
Confidence 356777888899999999999753 333468888887654 2234445688888888888763
No 349
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.02 E-value=5.8e+02 Score=32.64 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
+...|-.||..+++.|...|..+..++.+|..+
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 334455555555555555555555555444443
No 350
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.93 E-value=1.6e+02 Score=30.06 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 665 DSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
|...+.+-.++..+=..+.+--.-+-.|..
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455555555555555554444444444433
No 351
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.85 E-value=4e+02 Score=24.27 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGL-----SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l-----~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
...|-+....|..++.+=..+...|+..= -+.-|..-+....+.=...|=..+..+|.+|.+|+.++..++.++.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444444321 0112222222333333333444567777777777777777777766
Q ss_pred HHHh
Q 004320 698 QQRQ 701 (761)
Q Consensus 698 ~~~~ 701 (761)
.-+.
T Consensus 95 elk~ 98 (105)
T cd00632 95 ELQE 98 (105)
T ss_pred HHHH
Confidence 5543
No 352
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=29.74 E-value=1.2e+02 Score=31.79 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCC
Q 004320 625 ALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQF 658 (761)
Q Consensus 625 ~Le~~V~~Lq~~L~--~e~~~~~~Le~~l~~~~~~~ 658 (761)
.|-|-|.+||.||. +|+++|++.-+-.......+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 48899999999997 79999999888776655433
No 353
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=29.58 E-value=5.4e+02 Score=27.90 Aligned_cols=107 Identities=23% Similarity=0.189 Sum_probs=66.4
Q ss_pred HHHhhhhhHH---HHHHHHHHhhhhhhhhhhHHHhhHHH-----------------------------------------
Q 004320 584 IQRLEITKND---LRHRIAKEARGNAILQASLERRKQAL----------------------------------------- 619 (761)
Q Consensus 584 ~~~~~~~~~~---~~~~~~~~~~~~~~lq~~~~~~k~~~----------------------------------------- 619 (761)
|.+|...=.+ .|..|..|++.|+.|.+.|+..=++.
T Consensus 95 i~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~ 174 (264)
T PF08687_consen 95 IESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLD 174 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4444443333 35678899999999998887654321
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHH
Q 004320 620 ----HERRLALEQDVSRLQEQLQAE-----------RDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVA 683 (761)
Q Consensus 620 ----~~~r~~Le~~V~~Lq~~L~~e-----------~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~ 683 (761)
++-|..|++--..|+.|++.= +.++.+|.+.|+.. ++. .-.|+-.| -+||.|---||+-|-
T Consensus 175 ~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~e--q~~dy~~fv~mK-a~Ll~eqreLddkik 251 (264)
T PF08687_consen 175 EDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEE--QLADYRHFVKMK-AALLIEQRELDDKIK 251 (264)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-HHHHHHHHhHHHHHH
Confidence 345778888888999888764 44555555554310 000 00112222 258888888888888
Q ss_pred HHHHHHHHHH
Q 004320 684 RLKQKVAELH 693 (761)
Q Consensus 684 ~Le~~~~~l~ 693 (761)
-.|+|+..|+
T Consensus 252 lgeEQL~~L~ 261 (264)
T PF08687_consen 252 LGEEQLEALR 261 (264)
T ss_dssp HHHHHHHHHC
T ss_pred hhHHHHHHHH
Confidence 8888887765
No 354
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.19 E-value=2.1e+02 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 004320 672 LEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLS 708 (761)
Q Consensus 672 l~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~~ 708 (761)
+++|-.+|.++.+.+.++..++.++..-.+.-.-|+-
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti 197 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTI 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEE
Confidence 5677778888999999999998888776665544443
No 355
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.18 E-value=2.7e+02 Score=36.10 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 004320 665 DSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
+..-..|-+|.+.++..+..||+
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~ 194 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELEL 194 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777666555443
No 356
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.84 E-value=54 Score=32.98 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHH
Q 004320 592 NDLRHRIAKEARGNAILQASLER 614 (761)
Q Consensus 592 ~~~~~~~~~~~~~~~~lq~~~~~ 614 (761)
.|+..|....+-.||.|..-|..
T Consensus 3 eD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 36778888888899999998843
No 357
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.74 E-value=1.3e+02 Score=27.15 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=27.5
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (761)
Q Consensus 610 ~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~ 643 (761)
+.-++|-..++..-.+|.+||.+|+.+|..|+.=
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888999999999999988753
No 358
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.48 E-value=3.6e+02 Score=25.33 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 619 ~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
+|+.=-.|.++|.+|++-+. +...++=. +=+++-.++-||...|+-||..+..|+..|.+++-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r------~SEdrsa~-------SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR------RSEDRSAA-------SRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 45555677788888877665 22222111 11334557789999999999999999999988764
No 359
>PF13514 AAA_27: AAA domain
Probab=28.14 E-value=8.3e+02 Score=31.78 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=76.9
Q ss_pred cccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH------------HhhHHHHHHHHH---HHHHHHHHHH
Q 004320 571 VESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLE------------RRKQALHERRLA---LEQDVSRLQE 635 (761)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~------------~~k~~~~~~r~~---Le~~V~~Lq~ 635 (761)
.+.++++.+....+++++.....++.+|..-...-+.|+..++ ..=.++.+.+.. .++|+.+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788887777777777777777766443333333333221 111234444333 4556666666
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 636 QLQAERDLRAALEVGLSMSSGQF------SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 636 ~L~~e~~~~~~Le~~l~~~~~~~------~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
++..-..--..|..-|+ +.... .+|......+++|+.+-..++..+..++.++.+...++.+-+.+
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433333444455 22111 13333445678888888889988888888888888888766654
No 360
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=27.99 E-value=3.2e+02 Score=31.96 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=48.0
Q ss_pred CcccccCCCCCCCCCCCCcccccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhHHHhh
Q 004320 538 SSAEKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNA-ILQASLERRK 616 (761)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lq~~~~~~k 616 (761)
+|+.--+=|+. .++.|| .+-||...--- .+|.+-|+|. .+|+.+++
T Consensus 244 ~CARSLTCK~H--SMg~KR-AV~GRS~PYDV----------------------------LLA~~~~~~~~~~~~~~~~-- 290 (659)
T KOG4140|consen 244 NCARSLTCKLH--SMGQKR-AVKGRSAPYDV----------------------------LLAPEDNNNRKFLNKRLSE-- 290 (659)
T ss_pred cccccccccCC--Ccchhc-ccCCCCCCccc----------------------------ccchhhhhhHHHHHHHHHH--
Confidence 45544444555 367788 77888755211 1233344443 35555553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004320 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 617 ~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
.++++|+..++.|||.|..-++-+.+-.+
T Consensus 291 -------r~~~~~~~~~~~Q~Q~~~~~~~~~~~~~~ 319 (659)
T KOG4140|consen 291 -------REFDPDIHCGVIQLQTKKPCTRSLTCKTH 319 (659)
T ss_pred -------hhhhhhhhhhhHhhccCCCcchhHHHhhh
Confidence 47899999999999999988887776543
No 361
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.91 E-value=7.9e+02 Score=30.84 Aligned_cols=61 Identities=30% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
+.+|+.+-+.||++|+....-=--+|+|+. |+||.++|+++..+-.+--+|+..--++|..
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R-------------------~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~ 732 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKR-------------------LEEIPLIEKAYDERQEEDRELYEAREKQRIE 732 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455666667777777666555555666655 5677777777766666666666655555543
No 362
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.87 E-value=93 Score=31.32 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 670 AELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
+.|.|-..|.++|-||+.++.+|++.|
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999999999999988
No 363
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=27.70 E-value=4.1e+02 Score=27.88 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 624 LALEQDVSRLQEQLQAERDLRAA-------LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~-------Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
..|..|+++|+.+|.+|.+--.| ||++=... .|.+=..+.+|.= +-++.||.+|..++.+.+.|-
T Consensus 126 EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d-----~~~~~~l~~~e~s---~kId~Ev~~lk~qi~s~K~qt 197 (220)
T KOG3156|consen 126 EKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKD-----ESSSHDLQIKEIS---TKIDQEVTNLKTQIESVKTQT 197 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccc-----hhhhcchhHhHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999864333 44432211 1222222222211 667888888888888888887
Q ss_pred HHHHh
Q 004320 697 NQQRQ 701 (761)
Q Consensus 697 ~~~~~ 701 (761)
.|-..
T Consensus 198 ~qw~~ 202 (220)
T KOG3156|consen 198 IQWLI 202 (220)
T ss_pred HHHHH
Confidence 76443
No 364
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.69 E-value=4.3e+02 Score=23.49 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS-SRGMDSK----TRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~-~~~~p~~----~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
.++.....+.+....|..++++=......|+.+=.-...-..+ +.++... ...|=+.++.++.+|..|+.+...+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777764333444444322110000112 2333333 3344455677888888888888888
Q ss_pred HHHHHHHHhhh
Q 004320 693 HHQLNQQRQHH 703 (761)
Q Consensus 693 ~~~l~~~~~~~ 703 (761)
..++.......
T Consensus 89 ~~~l~~~~~~l 99 (106)
T PF01920_consen 89 EKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 365
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=27.51 E-value=3.8e+02 Score=25.75 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--cC-CCCCCCCC------------CCCChhHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALE-VGL--SM-SSGQFSSS------------RGMDSKTRAELEEIALAEAD 681 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le-~~l--~~-~~~~~~~~------------~~~p~~~~~ll~eia~~E~~ 681 (761)
.++.|..+|++||+..+.+++. |..|.. .-| .- ..-++-+. ..|-.....+..+|+.||.+
T Consensus 27 rl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999875 333332 222 11 11122111 11223334456678888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004320 682 VARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 682 v~~Le~~~~~l~~~l~~~ 699 (761)
+-..+..+.+|+..||+-
T Consensus 104 ~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 104 LESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888864
No 366
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=27.35 E-value=4.5e+02 Score=23.75 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=47.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~----------~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
.+|.++|.+..+++..+.+-++.=++|+..+-|--. +....+-+|..|+..|..++.+...+-.-|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 368899999999999998888887777765443222 22333556888888888888777666665554
No 367
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.28 E-value=1.4e+02 Score=34.84 Aligned_cols=19 Identities=5% Similarity=0.261 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~ 638 (761)
+.+..+||++++.|+.+++
T Consensus 75 Q~kasELEKqLaaLrqElq 93 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466778888887754443
No 368
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.79 E-value=5.8e+02 Score=28.96 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=56.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC------------C-C-CCCChhHHHHHHHHHHHH
Q 004320 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------------S-S-RGMDSKTRAELEEIALAE 679 (761)
Q Consensus 614 ~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~------------~-~-~~~p~~~~~ll~eia~~E 679 (761)
.|=...+--|.+|+....++......=...+..||.||..-.+++. . + -.-+.--.+|+.|+.+++
T Consensus 50 ~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~ 129 (384)
T PF03148_consen 50 QRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIE 129 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHH
Confidence 3444445556666666666655555555566677777754433332 1 1 335666789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 680 ADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 680 ~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.--..|++.+.....||..-|
T Consensus 130 ~~~~lL~~~l~~~~eQl~~lr 150 (384)
T PF03148_consen 130 NIKRLLQRTLEQAEEQLRLLR 150 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888777776555
No 369
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.48 E-value=1.4e+02 Score=37.37 Aligned_cols=122 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-------ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~-------~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~ 653 (761)
+.+=-||-.+-++--++|++=.-.=..+|+.+.++.+ +++..--+||+|-..|+++|.- .-..+-+.+...
T Consensus 986 dmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~--~~~k~q~~s~~~ 1063 (1243)
T KOG0971|consen 986 DLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS--QSKKTQEGSRGP 1063 (1243)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh--cccccCccccCC
Q ss_pred CCCCCC-CCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004320 654 SSGQFS-SSRGMDS-KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (761)
Q Consensus 654 ~~~~~~-~~~~~p~-~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~ 704 (761)
++..++ ..+.+|. ..+-=..+=..+=.++.-|+++|.-|+.-++|+|.++.
T Consensus 1064 ~~~~ist~~sG~~s~~~~~s~~~g~a~~g~~p~l~~qin~l~na~~qer~er~ 1116 (1243)
T KOG0971|consen 1064 PPSGISTLVSGIASEEQQRSAIPGQALVGDSPLLLQQINALRNAISQERHERS 1116 (1243)
T ss_pred CCcceeccccCCCCCccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHH
No 370
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.47 E-value=1.9e+02 Score=33.68 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----------ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~-----------~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
+|-++-..+.+|+.- .+.|..|++.-++-|+ ++.-.|.+|+++...|+.++++=+.+-.-|.
T Consensus 64 lva~~k~~r~~~~~l----~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 64 LVAEVKELRKRLAKL----ISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444443 4455555544443332 2233345555555555555544433333343
No 371
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.97 E-value=2.1e+02 Score=25.06 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=26.2
Q ss_pred HHHHhhhhhHHHHHHHH---HHhhhhh----hhhhhHHHhhHHH
Q 004320 583 AIQRLEITKNDLRHRIA---KEARGNA----ILQASLERRKQAL 619 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~~~----~lq~~~~~~k~~~ 619 (761)
-|+|||.-|..+...|. .|||+|- +|=.-+..||..-
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~ 55 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDP 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCH
Confidence 48899999999998884 5888873 4544455555543
No 372
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.75 E-value=5.3e+02 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
...+.-...|=..|..+|..|..|+++...|+.++...+.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566778888898888888888888876654
No 373
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.71 E-value=5.1e+02 Score=32.88 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcCCccccccc
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ--------HHYGSLSDACDR 713 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~--------~~~~s~~~~~~~ 713 (761)
+.....++..+++-++.++..++..+..+..++.+.+. ...+-.|..|.+
T Consensus 408 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg~ 465 (908)
T COG0419 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQ 465 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 34445555666677777777777777777777777543 113567888883
No 374
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.69 E-value=5.5e+02 Score=29.53 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
|-.++.-||+||++|+-.+.-||--|. -.+++-...++-++.|+-+..-+|+|
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~-----------------~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLD-----------------DDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 667788899999999999999987553 34455555556666666666655533
No 375
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=25.60 E-value=94 Score=36.61 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=68.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~ 660 (761)
|.+--+-|+-+.+||.||| -||- -++-+...+..|..-...|..-|.+|+.=+..|.-+-..+.+-..+
T Consensus 33 E~dr~~WElERaElqariA-------fLqg----Erk~qenlk~dl~rR~kmlE~~lkeerak~~~lq~gte~~~~d~~~ 101 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIA-------FLQG----ERKGQENLKMDLVRRIKMLEFALKEERAKYNKLQPGTELPQLDEKP 101 (577)
T ss_pred hhhhhheehhhhhHHHHHH-------HHhc----chhhhHHHHHHHHHHHhcccchhHHhhhhhhccccccccccccccc
Confidence 6667778999999999997 3442 1233334456666777778888888888888888744545555555
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 661 SRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
+...-+.+...++.+..+|+...-..+--.-|
T Consensus 102 ~~~~s~~t~~~~~~~~~~~~~~~~w~~~r~~l 133 (577)
T KOG0642|consen 102 VADNSEVTGNTLAAANTLENAILLWKQGRLLL 133 (577)
T ss_pred chhcCccccccccccccccchHHHHHHHHHHH
Confidence 56666677778888888877655544433333
No 376
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.42 E-value=1.2e+03 Score=27.59 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 004320 593 DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (761)
Q Consensus 593 ~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~ 635 (761)
.++.++..-.-.++.|++.++..+.+..+++..|++-=.+|..
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~ 113 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSE 113 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445555555555555555555544444333333
No 377
>PF13514 AAA_27: AAA domain
Probab=25.31 E-value=9.1e+02 Score=31.43 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
+|.........+..+++.++..+..++.++..|+.++.
T Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 236 FPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777888888888888877777776553
No 378
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=25.26 E-value=5.7e+02 Score=23.93 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 630 VSRLQEQLQAERDLRAALEVGLSM-SSGQFSSS--RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 630 V~~Lq~~L~~e~~~~~~Le~~l~~-~~~~~~~~--~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+...+.+|+.-...+.-+...+.. ....++++ .........|-..|...+..|..++..|...+..|-+.+.
T Consensus 29 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 29 FERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555444444444433321 11112222 2234455667777777777777777777777776665543
No 379
>PRK12704 phosphodiesterase; Provisional
Probab=25.24 E-value=4.5e+02 Score=31.27 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 617 QALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 617 ~~~~~~r~~Le~~V~~Lq~~L 637 (761)
....++|.++|+++...+++|
T Consensus 64 eE~~~~R~Ele~e~~~~e~~L 84 (520)
T PRK12704 64 EEIHKLRNEFEKELRERRNEL 84 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777766665555544
No 380
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=25.17 E-value=9.1e+02 Score=26.67 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHH-----H--HHHHHHHHHhhcCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 623 RLALEQDVSRLQEQLQA-----E--RDLRAALEVGLSMSSG-QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 623 r~~Le~~V~~Lq~~L~~-----e--~~~~~~Le~~l~~~~~-~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
|..||-||+-.+-+|.. + ..-++=||.||.+... -+.+-..+...+-.|-....+|=...++-|.++..|..
T Consensus 86 kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~ 165 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEI 165 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55566666655555431 1 2223445555544322 12222333333333444444555555555555555555
Q ss_pred HHHHHH
Q 004320 695 QLNQQR 700 (761)
Q Consensus 695 ~l~~~~ 700 (761)
.|.+-|
T Consensus 166 elh~tr 171 (305)
T PF14915_consen 166 ELHHTR 171 (305)
T ss_pred HHHHHH
Confidence 555544
No 381
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.08 E-value=8.1e+02 Score=25.63 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=24.6
Q ss_pred ccccCcccCCCCc-ccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 004320 559 FWGRSNARKTSSV-ESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAI 607 (761)
Q Consensus 559 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (761)
++|++..|+..+. |.|+---|-| +=|+-...-|..||..|+.-||.
T Consensus 7 ~FG~~k~~~~~t~~eaI~kLrEte---emL~KKqe~Le~ki~~e~e~~A~ 53 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQEAIQKLRETE---EMLEKKQEFLEKKIEQEVENNAR 53 (221)
T ss_pred HhCcccccCCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665554 3332222211 11233345688899988777664
No 382
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=25.06 E-value=1.8e+02 Score=34.05 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=48.2
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHHHH
Q 004320 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (761)
Q Consensus 37 WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eW 116 (761)
=+-|||+|-.+.|.|+.-.+... ....+..+++.|+.++.-... +..+..|.|.- ..-......+.++.++.+|
T Consensus 325 ~~dRy~~LF~~~llflsvs~rMs-~fIyegKlp~tG~iV~klEdt---e~~~nafeis~--~ti~rIv~~c~~~~~l~~w 398 (661)
T KOG2070|consen 325 EKDRYLLLFPNVLLFLSVSPRMS-GFIYEGKLPTTGMIVTKLEDT---ENHRNAFEISG--STIERIVVSCNNQQDLQEW 398 (661)
T ss_pred hhhheeeeccceeeeeEeccccc-hhhhccccccceeEEeehhhh---hcccccccccc--cchhheeeccCChHHHHHH
Confidence 35899999999999987655432 111112345566665543221 11223344431 1122366789999999999
Q ss_pred HHHHHH
Q 004320 117 KTALEL 122 (761)
Q Consensus 117 I~AL~~ 122 (761)
+.++..
T Consensus 399 ve~ln~ 404 (661)
T KOG2070|consen 399 VEHLNK 404 (661)
T ss_pred HHHhhh
Confidence 999985
No 383
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=25.01 E-value=6.9e+02 Score=24.79 Aligned_cols=72 Identities=29% Similarity=0.327 Sum_probs=56.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 609 q~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
.+.++....++..||....++..+|=..++.-.-...-|+. ...+|+.|-+-..+||++
T Consensus 31 ~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~---------------------~~~qv~~Lr~~e~~le~~ 89 (152)
T PF07321_consen 31 RAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK---------------------WQQQVASLREREAELEQQ 89 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH---------------------HHHHHHHHHHhHHHHHHH
Confidence 34556667788888888888888888888777766666655 446888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 004320 689 VAELHHQLNQQRQ 701 (761)
Q Consensus 689 ~~~l~~~l~~~~~ 701 (761)
+.+...++.++++
T Consensus 90 ~~~a~~~~~~e~~ 102 (152)
T PF07321_consen 90 LAEAEEQLEQERQ 102 (152)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888876
No 384
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.93 E-value=6.8e+02 Score=32.27 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=26.6
Q ss_pred HHHHHhhhhhHHHHHHHH------HHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 582 LAIQRLEITKNDLRHRIA------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (761)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~------~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~ 642 (761)
..|+.||.--.+||..|- .++|. -+..++++-+.+...+.+++.....+...+.+.++
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~---~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEK---NLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666442 11111 13333444444444444444444444444444333
No 385
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=24.87 E-value=1.2e+02 Score=27.12 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=40.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHH--------------HHHHHHHHHHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL--------------HERRLALEQDVSRLQEQL 637 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~--------------~~~r~~Le~~V~~Lq~~L 637 (761)
....||..-..||.++.+|..-+++|...+.+....+ =.--..||-||.+|.+++
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKV 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888889999999999999999999998875543 122334666666666655
No 386
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.85 E-value=1.1e+02 Score=25.57 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 668 TRAELEEIALAEADVARLKQKVAELH 693 (761)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~~~~l~ 693 (761)
+-||=+=||+||+||.|+|..+..=+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455559999999999999876543
No 387
>smart00338 BRLZ basic region leucin zipper.
Probab=24.54 E-value=2.5e+02 Score=23.23 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004320 628 QDVSRL 633 (761)
Q Consensus 628 ~~V~~L 633 (761)
+.+..|
T Consensus 26 ~~~~~L 31 (65)
T smart00338 26 AEIEEL 31 (65)
T ss_pred HHHHHH
Confidence 333333
No 388
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=24.41 E-value=1.4e+02 Score=34.30 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 629 DVSRLQEQLQAERDLRAALEVGLSMSSG---QFSSS--RGMDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 629 ~V~~Lq~~L~~e~~~~~~Le~~l~~~~~---~~~~~--~~~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
|..-|-.+|-.|..|..+||.||-...- ....| ...+.-..++=..|+.|.-||.+|+-+
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E 372 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTE 372 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999854322 22344 233444444444444444444444443
No 389
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.19 E-value=2e+02 Score=35.01 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=25.6
Q ss_pred HHHhhhhhhhhhhHHHh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 599 AKEARGNAILQASLERR-----KQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 599 ~~~~~~~~~lq~~~~~~-----k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
-+-+|||-.+-...... +...-.+|.+|+++|++|+..+++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578887643333322 223344788899999998876653
No 390
>PRK11020 hypothetical protein; Provisional
Probab=24.11 E-value=3e+02 Score=26.06 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 625 ~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
.|.+|+.+|-.+|.. +|.=|..|..+. =+..+.++..||+.|+.+|.+|..+-. +.|+.|++
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~~~---~~lske~~ 63 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRG---------DAEKYAQFEKEKATLEAEIARLKEVQS---QKLSKEAQ 63 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 367888999999875 455555555422 134455666666666666666655432 35555555
No 391
>PRK11239 hypothetical protein; Provisional
Probab=23.77 E-value=1.1e+02 Score=32.06 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
..++.||++|..||++|.+|+.+|.+-+.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999877655
No 392
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.45 E-value=5.6e+02 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=10.0
Q ss_pred cchHHhHHHhhhcCCCCCCC
Q 004320 232 HVIGDCVKHVLRELPSSPVP 251 (761)
Q Consensus 232 h~vAslLK~fLReLPePLlp 251 (761)
..++++++.|+..+-.+=+|
T Consensus 8 ~~L~~L~~~Yv~aIn~G~vP 27 (297)
T PF02841_consen 8 PMLAELVKSYVDAINSGSVP 27 (297)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 34556666666555555444
No 393
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.98 E-value=3.6e+02 Score=24.97 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHh
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~ 615 (761)
|.+|.+....+..-|......|..|+..+..=
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~ 58 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667777877788888888876633
No 394
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.88 E-value=7.1e+02 Score=29.81 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
+++-...+.+-.|+.-|=.++.+|..++..++.+|-+|.
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345556778888888888888888888888888888877
No 395
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.76 E-value=6.1e+02 Score=23.38 Aligned_cols=73 Identities=26% Similarity=0.307 Sum_probs=47.1
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHHH
Q 004320 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDS--KTRAELEEIALAEADVAR 684 (761)
Q Consensus 607 ~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~--~~~~ll~eia~~E~~v~~ 684 (761)
+++.-+.++ .+.++.-.+|++.+.+...+|+. ||.-+.+ ||. .+.+|=-+|+-++.++..
T Consensus 22 ~~~~~l~~~-~a~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~----------LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 22 IFWLWLRRT-YAKREDIEKLEERLDEHDRRLQA-------LETKLEH----------LPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----------CCCHHHHHHHHHHHHHHHhHHHH
Confidence 456666553 45577777788877777777653 5555532 333 345666777777888888
Q ss_pred HHHHHHHHHHHHH
Q 004320 685 LKQKVAELHHQLN 697 (761)
Q Consensus 685 Le~~~~~l~~~l~ 697 (761)
|+.++..+..++.
T Consensus 84 l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 84 LSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777765543
No 396
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=22.60 E-value=2.6e+02 Score=25.13 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=29.0
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
..|.++. +++|+..|.+..|...++..|-+...
T Consensus 57 ~~F~l~~----~k~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 57 PEFDLTF----DKPYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp TEEEEES----SSEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCEEEEE----CCCcEEEeCCHHHHHHHHHHHHHHhc
Confidence 5699988 68999999999999999999987654
No 397
>PRK11281 hypothetical protein; Provisional
Probab=22.44 E-value=9.3e+02 Score=31.51 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKV 689 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~ 689 (761)
-|.....|-+|.+++++++..+++..
T Consensus 190 ~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 190 RPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888877776654
No 398
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.28 E-value=1.1e+02 Score=32.68 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004320 617 QALHERRLALEQDVSRLQE 635 (761)
Q Consensus 617 ~~~~~~r~~Le~~V~~Lq~ 635 (761)
+.+.+||.+|+.+|++|..
T Consensus 7 ~eL~qrk~~Lq~eIe~Ler 25 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLER 25 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888854
No 399
>PF13166 AAA_13: AAA domain
Probab=22.14 E-value=1.4e+03 Score=27.79 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (761)
Q Consensus 622 ~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~ 693 (761)
...+++..+..|...|.. ++.+|+.-...+...+.+. .+......+...|..++..|....+++..+.
T Consensus 323 ~~~~~~~~~~~l~~~l~~---l~~~L~~K~~~~~~~~~~~-~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~ 390 (712)
T PF13166_consen 323 DKEELKSAIEALKEELEE---LKKALEKKIKNPSSPIELE-EINEDIDELNSIIDELNELIEEHNEKIDNLK 390 (712)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555532 5666666554444433332 2233334444445555554444444444433
No 400
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.14 E-value=1.7e+02 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004320 628 QDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 628 ~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
+|+++|.+.|++|+.||.-||-
T Consensus 594 kel~kl~~dleeek~mr~~lem 615 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLEM 615 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhHh
Confidence 4677788888888888876653
No 401
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.98 E-value=1.5e+03 Score=27.89 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 675 IALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 675 ia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
+-.+...|.++|+++..-+.++..
T Consensus 181 ~~~~~s~l~~~eke~~~~~~ql~~ 204 (716)
T KOG4593|consen 181 AKRLHSELQNEEKELDRQHKQLQE 204 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554443
No 402
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=21.89 E-value=2.7e+02 Score=25.36 Aligned_cols=29 Identities=45% Similarity=0.640 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhc
Q 004320 624 LALEQDVSRLQEQLQ------AERDLRAALEVGLS 652 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~------~e~~~~~~Le~~l~ 652 (761)
..+..++++||+||+ .|+=-|.||..+|.
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLg 40 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGLG 40 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346667788888875 47777888888774
No 403
>PRK13694 hypothetical protein; Provisional
Probab=21.78 E-value=1.4e+02 Score=26.56 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=26.5
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh----hhhhhHHHhhHHH
Q 004320 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQAL 619 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~lq~~~~~~k~~~ 619 (761)
-|+|||.-|.++...| --|||+|- +|-.-+.-||+.-
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~ 63 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDD 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCH
Confidence 4899999999999888 45888873 4544455555544
No 404
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.65 E-value=9.6e+02 Score=25.25 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=43.6
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEI-ALAEADVARLK 686 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~ei-a~~E~~v~~Le 686 (761)
++.-...|..........|..+|..|+..++.|+.-|..-|.-+-. +..++..-| ..++.|....|
T Consensus 108 i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k-------------rl~e~~~~l~~~i~~Ek~~Re 174 (247)
T PF06705_consen 108 IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILK-------------RLEEEENRLQEKIEKEKNTRE 174 (247)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555556667777777777777777777665554321 111111111 23455555566
Q ss_pred HHHHHHHHHHHHHHh
Q 004320 687 QKVAELHHQLNQQRQ 701 (761)
Q Consensus 687 ~~~~~l~~~l~~~~~ 701 (761)
+.+.+|+..|.+-+.
T Consensus 175 ~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 175 SKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665554443
No 405
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.61 E-value=6e+02 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
.+-+||+-++.++...|..+..|+.|..
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 406
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=21.41 E-value=4.3e+02 Score=32.30 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhcCCcccccccccc
Q 004320 679 EADVARLKQKVAELHHQLNQQ-RQHHYGSLSDACDRYQN 716 (761)
Q Consensus 679 E~~v~~Le~~~~~l~~~l~~~-~~~~~~s~~~~~~~~~~ 716 (761)
+.....|++.+..+...++++ .-.++||.+++..+.|+
T Consensus 606 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (657)
T PTZ00186 606 AAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQ 644 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHH
Confidence 333444555555555555443 45567777666555433
No 407
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.37 E-value=9.8e+02 Score=30.92 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhcCCccCCCCCCccch--HHhHHHhhhcCCCCCCChhhHHHHHHHHhc
Q 004320 205 AADVEEVDRRVQEYEQGKTEFSADEDAHVI--GDCVKHVLRELPSSPVPASCCTALLEAYKI 264 (761)
Q Consensus 205 sg~~~~v~~L~~~ld~g~~~~~~~~D~h~v--AslLK~fLReLPePLlp~~ly~~ll~~~~~ 264 (761)
+--...++.+...|+= .+ .+|-.+ =..=+.||.+.. |.+.|..|+.+...
T Consensus 158 StKk~dl~~vv~~f~I---~v---eNP~~~lsQD~aR~FL~~~~----p~dkYklfmkaT~L 209 (1074)
T KOG0250|consen 158 STKKEDLDTVVDHFNI---QV---ENPMFVLSQDAARSFLANSN----PKDKYKLFMKATQL 209 (1074)
T ss_pred cccHHHHHHHHHHhCc---CC---CCcchhhcHHHHHHHHhcCC----hHHHHHHHHHHhHH
Confidence 3345556666655542 11 122221 123467887765 57788888877554
No 408
>PF14282 FlxA: FlxA-like protein
Probab=21.29 E-value=5.7e+02 Score=23.56 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=33.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.-.|++|+.-...|+.+|. +++.+.-| +.+.+ .+++..|+..+..|+.||.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~--~~e~k----~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDL--DAEQK----QQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCC--CHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999996 56665443 22222 3445555555555555554
No 409
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.15 E-value=4.9e+02 Score=22.53 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhh---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 004320 593 DLRHRIAKEARGNAILQASLERRK---QALHERRLALEQDVSRLQEQLQA-ERDLRAAL 647 (761)
Q Consensus 593 ~~~~~~~~~~~~~~~lq~~~~~~k---~~~~~~r~~Le~~V~~Lq~~L~~-e~~~~~~L 647 (761)
.|..||..=+-..+.||-.++.=| .++.+.+.+|+++..+|+..-.. ...++.+|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555655444333 34557788899999888844332 23344444
No 410
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.12 E-value=7.5e+02 Score=23.85 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhh
Q 004320 589 ITKNDLRHRIAKEARGNAILQAS 611 (761)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~lq~~ 611 (761)
+.=.+|=.++.+.+..+..|...
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~ 60 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDK 60 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 411
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.05 E-value=4.1e+02 Score=27.46 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
||+|-.+|+++|..|+.-+..+|.-+. .-++.|++|..++++=+.-|
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~--------------------K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHK--------------------KLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887544 34667888888887766544
No 412
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.83 E-value=8.4e+02 Score=24.29 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 619 LHERRLALEQDVSRLQEQLQAER 641 (761)
Q Consensus 619 ~~~~r~~Le~~V~~Lq~~L~~e~ 641 (761)
+.++-.+++.+...+++.++...
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333444444444444444443
No 413
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.78 E-value=2.6e+02 Score=29.80 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 619 ~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
++.+-..||.++.+|+++|.+...+...|+..
T Consensus 23 Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~ 54 (236)
T PF12017_consen 23 LKKKIRRLEKELKKLKQKLEKYQKLENSLKQI 54 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333346666666666665555555555443
No 414
>PRK12705 hypothetical protein; Provisional
Probab=20.37 E-value=8.6e+02 Score=28.90 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 617 QALHERRLALEQDVSRLQEQLQAE 640 (761)
Q Consensus 617 ~~~~~~r~~Le~~V~~Lq~~L~~e 640 (761)
...+.+|.++|+|+...+..++..
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666655443
No 415
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.37 E-value=3.9e+02 Score=28.98 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 004320 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-------IALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e-------ia~~E~~v~~Le~~~~~l~~~l 696 (761)
++|-+-=+.|-..|.+|..+|.+...|+.++.-.-.+-..|=.-++++..+ |.-++.|..+||.|+.--+..|
T Consensus 127 seit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666778888899999999888888875532112222333334444444 4445555555666665555555
Q ss_pred HHHHh
Q 004320 697 NQQRQ 701 (761)
Q Consensus 697 ~~~~~ 701 (761)
-+.+.
T Consensus 207 ER~qK 211 (267)
T PF10234_consen 207 ERNQK 211 (267)
T ss_pred HHHHH
Confidence 44443
No 416
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.15 E-value=1.2e+03 Score=26.76 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 671 ELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 671 ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
...++..++.++..++.++...+.+|
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444
No 417
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.13 E-value=2.4e+02 Score=35.21 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=4.0
Q ss_pred HHHHHHHhh
Q 004320 580 EELAIQRLE 588 (761)
Q Consensus 580 ~~~~~~~~~ 588 (761)
|+.+..+|.
T Consensus 730 dDe~m~~lD 738 (784)
T PF04931_consen 730 DDEQMMALD 738 (784)
T ss_pred CHHHHHHHH
Confidence 444444443
No 418
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.11 E-value=9.2e+02 Score=26.03 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=21.7
Q ss_pred hhhhhhhhhHHHhhHHHHH----------HHHHHHHHHHHHHHHHHH
Q 004320 603 RGNAILQASLERRKQALHE----------RRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 603 ~~~~~lq~~~~~~k~~~~~----------~r~~Le~~V~~Lq~~L~~ 639 (761)
|.|+.++-+..+||+...+ -..+|.++|++|+++|.+
T Consensus 201 rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777776666664433 244455666666665554
No 419
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.09 E-value=1.3e+02 Score=37.60 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=5.9
Q ss_pred CCCcEEEEEEEeC
Q 004320 34 WKSWKKRWFILTR 46 (761)
Q Consensus 34 ~k~WKKRWfVL~~ 46 (761)
...|.-|-||..+
T Consensus 1078 ~g~~~dr~~IFSR 1090 (1516)
T KOG1832|consen 1078 HGNRRDRQFIFSR 1090 (1516)
T ss_pred ccCcccchhhHhh
Confidence 3445554444433
No 420
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.05 E-value=7.9e+02 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
...+.++|-.||+..|.++..|++|...|..
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777788888888888887764
Done!