Query 004320
Match_columns 761
No_of_seqs 510 out of 2405
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 6.7E-41 2.3E-45 342.4 16.8 203 154-375 8-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 1.1E-40 3.9E-45 337.3 16.0 196 159-372 6-201 (201)
3 2ee4_A RHO GTPase activating p 100.0 1.5E-40 5.2E-45 338.5 17.0 198 161-377 8-207 (209)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 3.9E-40 1.3E-44 340.1 16.4 208 155-376 11-223 (229)
5 2osa_A N-chimaerin; RHO-GAP, G 100.0 2.1E-39 7E-44 328.5 18.4 192 163-372 6-202 (202)
6 1tx4_A P50-rhogap; complex (GT 100.0 8.8E-40 3E-44 330.2 15.7 193 159-372 2-198 (198)
7 3fk2_A Glucocorticoid receptor 100.0 1E-39 3.6E-44 340.5 16.1 196 160-374 48-245 (246)
8 1f7c_A Rhogap protein; GTPase 100.0 1.4E-39 4.7E-44 336.6 16.1 194 164-376 17-220 (231)
9 1ow3_A RHO-GTPase-activating p 100.0 9.5E-39 3.2E-43 332.5 15.6 197 159-376 38-238 (242)
10 1pbw_A Rhogap domain, phosphat 100.0 1.8E-38 6E-43 325.0 12.7 191 163-376 5-202 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.2E-37 4.1E-42 321.4 17.6 209 161-371 16-228 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 8E-37 2.7E-41 309.5 16.9 190 168-374 4-196 (201)
13 3eap_A RHO GTPase-activating p 100.0 1.8E-36 6.2E-41 320.3 14.5 200 159-376 58-261 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 4E-35 1.4E-39 331.8 16.3 192 163-372 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 4.3E-36 1.5E-40 306.9 3.7 192 162-376 19-213 (214)
16 3qis_A Inositol polyphosphate 100.0 2.5E-31 8.6E-36 292.2 16.2 141 179-327 198-338 (366)
17 1wi1_A Calcium-dependent activ 99.7 1.7E-17 5.7E-22 154.9 11.1 105 14-127 3-112 (126)
18 1x1f_A Signal-transducing adap 99.7 8.9E-17 3E-21 155.2 14.3 103 8-125 8-113 (149)
19 1v88_A Oxysterol binding prote 99.7 1E-16 3.4E-21 151.3 12.7 104 15-129 4-128 (130)
20 2rsg_A Collagen type IV alpha- 99.7 2.6E-16 8.7E-21 138.7 9.8 92 19-123 1-92 (94)
21 1pls_A Pleckstrin homology dom 99.7 6.8E-16 2.3E-20 140.2 12.9 99 17-128 3-104 (113)
22 1v89_A Hypothetical protein KI 99.7 9.5E-16 3.3E-20 139.4 13.8 108 15-129 4-116 (118)
23 1wgq_A FYVE, rhogef and PH dom 99.7 4.2E-16 1.4E-20 140.9 11.0 102 15-129 4-107 (109)
24 1v5u_A SBF1, SET binding facto 99.6 4.9E-16 1.7E-20 141.5 10.9 101 15-129 4-115 (117)
25 1dyn_A Dynamin; signal transdu 99.6 5E-16 1.7E-20 143.7 10.9 99 18-123 11-115 (125)
26 2d9v_A Pleckstrin homology dom 99.6 2.4E-15 8E-20 141.1 14.8 109 14-126 3-115 (130)
27 2p0d_A RHO GTPase-activating p 99.6 7.7E-16 2.6E-20 144.6 11.1 113 13-127 6-126 (129)
28 2da0_A 130-kDa phosphatidylino 99.6 1.5E-15 5E-20 138.9 12.6 100 14-129 5-105 (114)
29 1v5p_A Pleckstrin homology dom 99.6 1.3E-15 4.6E-20 142.8 12.4 104 16-129 12-124 (126)
30 2cod_A Centaurin-delta 1; ARF 99.6 1.8E-15 6.3E-20 137.9 12.6 97 15-127 4-101 (115)
31 2lul_A Tyrosine-protein kinase 99.6 2.7E-15 9.2E-20 146.7 14.5 117 14-142 10-137 (164)
32 2dhk_A TBC1 domain family memb 99.6 1.3E-15 4.6E-20 140.4 11.6 98 15-126 4-105 (119)
33 2w2x_D 1-phosphatidylinositol- 99.6 2E-16 6.8E-21 147.6 5.9 109 15-127 8-121 (124)
34 2dn6_A KIAA0640 protein; PH do 99.6 2E-15 6.8E-20 137.1 12.3 99 15-127 4-105 (115)
35 1fgy_A GRP1; PH domain, signal 99.6 2.7E-15 9.2E-20 138.4 13.0 102 17-129 3-124 (127)
36 2i5f_A Pleckstrin; PH domain, 99.6 4.7E-15 1.6E-19 133.3 13.8 96 16-124 4-108 (109)
37 1x05_A Pleckstrin; PH domain, 99.6 6.1E-15 2.1E-19 137.1 14.4 101 14-127 13-122 (129)
38 2dkp_A Pleckstrin homology dom 99.6 6.1E-15 2.1E-19 136.5 14.3 98 15-125 17-119 (128)
39 1fao_A Dual adaptor of phospho 99.6 3.5E-15 1.2E-19 138.1 12.6 100 14-127 13-114 (126)
40 1x1g_A Pleckstrin 2; PH domain 99.6 5.7E-15 1.9E-19 137.1 13.9 99 14-125 13-124 (129)
41 3cxb_B Pleckstrin homology dom 99.6 4E-15 1.4E-19 136.3 12.4 95 20-126 1-102 (112)
42 1unq_A RAC-alpha serine/threon 99.6 1.3E-15 4.5E-20 141.0 9.3 107 16-128 5-113 (125)
43 1eaz_A Tandem PH domain contai 99.6 3.3E-15 1.1E-19 137.6 11.8 99 15-127 10-113 (125)
44 3a8p_A T-lymphoma invasion and 99.6 6E-17 2.1E-21 170.3 -0.4 109 15-128 7-127 (263)
45 2yry_A Pleckstrin homology dom 99.6 1.1E-14 3.6E-19 133.8 14.4 98 15-125 18-120 (122)
46 1u5d_A SKAP55, SRC kinase-asso 99.6 5.1E-15 1.7E-19 132.3 11.7 98 18-126 2-106 (108)
47 1btk_A Bruton'S tyrosine kinas 99.6 3.5E-15 1.2E-19 146.8 10.5 104 18-129 2-136 (169)
48 2coc_A FYVE, rhogef and PH dom 99.6 7E-15 2.4E-19 135.2 11.6 100 16-126 5-107 (112)
49 2cof_A Protein KIAA1914; PH do 99.6 2.9E-15 9.8E-20 135.3 8.8 99 15-126 4-102 (107)
50 1wjm_A Beta-spectrin III; PH d 99.6 4.2E-15 1.4E-19 137.5 9.9 108 15-129 4-121 (123)
51 2d9x_A Oxysterol binding prote 99.6 3.6E-15 1.2E-19 137.5 9.1 100 16-127 5-106 (120)
52 4a6h_A Phosphatidylinositol 4, 99.6 8.1E-15 2.8E-19 136.4 11.5 100 19-124 6-117 (120)
53 3rcp_A Pleckstrin homology dom 99.6 6.7E-15 2.3E-19 131.4 10.6 96 21-128 1-96 (103)
54 3pp2_A RHO GTPase-activating p 99.6 1.1E-14 3.8E-19 135.7 12.2 109 15-125 4-123 (124)
55 1u5f_A SRC-associated adaptor 99.6 1.3E-14 4.6E-19 138.5 12.6 99 15-126 13-120 (148)
56 2y7b_A Actin-binding protein a 99.6 4.3E-15 1.5E-19 138.8 9.0 100 17-125 3-128 (134)
57 2j59_M RHO-GTPase activating p 99.6 8.4E-15 2.9E-19 142.8 11.2 104 18-128 2-114 (168)
58 1wg7_A Dedicator of cytokinesi 99.6 9.3E-15 3.2E-19 139.6 11.1 100 15-127 14-126 (150)
59 3aj4_A Pleckstrin homology dom 99.6 7.9E-15 2.7E-19 132.9 9.1 103 17-125 3-111 (112)
60 1upq_A PEPP1; PH domain, phosp 99.5 2.4E-14 8.1E-19 131.6 12.2 101 16-125 8-109 (123)
61 2d9y_A Pleckstrin homology dom 99.5 1.6E-14 5.6E-19 131.4 10.9 101 16-125 8-109 (117)
62 2rlo_A Centaurin-gamma 1; spli 99.5 2.3E-14 7.9E-19 133.8 11.9 106 17-126 2-125 (128)
63 1dro_A Beta-spectrin; cytoskel 99.5 1.1E-14 3.7E-19 134.8 8.6 109 15-126 4-120 (122)
64 1btn_A Beta-spectrin; signal t 99.5 3.7E-14 1.2E-18 126.8 10.2 98 21-123 1-106 (106)
65 1u5e_A SRC-associated adaptor 99.5 6.3E-14 2.2E-18 142.6 12.3 99 17-126 104-209 (211)
66 4h8s_A DCC-interacting protein 99.5 5.7E-14 1.9E-18 156.1 11.6 104 14-127 296-400 (407)
67 3tfm_A Myosin X; split PH doma 99.5 1.1E-13 3.8E-18 142.3 11.3 99 16-128 55-158 (228)
68 2dtc_A RAL guanine nucleotide 99.5 3.7E-13 1.3E-17 126.0 13.3 103 20-127 2-114 (126)
69 2q13_A DCC-interacting protein 99.4 3.1E-13 1.1E-17 149.1 11.8 98 16-127 275-377 (385)
70 2r09_A Cytohesin-3; autoinhibi 99.4 4.2E-13 1.4E-17 146.3 12.1 103 18-131 212-334 (347)
71 3lju_X ARF-GAP with dual PH do 99.4 5.3E-13 1.8E-17 147.5 12.7 98 15-126 265-373 (386)
72 3tca_A Amyloid beta A4 precurs 99.4 1.1E-12 3.7E-17 138.3 10.7 105 18-125 167-276 (291)
73 1qqg_A IRS-1, insulin receptor 99.4 6.6E-13 2.2E-17 139.6 8.9 96 14-127 5-114 (264)
74 2rov_A RHO-associated protein 99.3 3.4E-12 1.2E-16 118.2 7.8 99 21-125 3-115 (117)
75 2fjl_A 1-phosphatidylinositol- 99.3 2.2E-11 7.4E-16 116.6 12.0 105 20-126 2-149 (150)
76 3lju_X ARF-GAP with dual PH do 99.2 1.1E-11 3.8E-16 137.0 9.9 95 19-124 146-245 (386)
77 2ys3_A UNC-112-related protein 99.2 6.6E-11 2.3E-15 111.3 10.1 98 19-124 9-111 (137)
78 4ejn_A RAC-alpha serine/threon 99.2 5E-11 1.7E-15 133.0 10.1 104 17-126 4-109 (446)
79 3a8n_A TIAM-1, T-lymphoma inva 99.2 2.5E-11 8.4E-16 128.1 6.6 106 15-125 7-124 (279)
80 2d9w_A Docking protein 2; PH d 99.1 8.3E-10 2.8E-14 102.1 12.1 102 15-125 8-121 (127)
81 3hk0_A Growth factor receptor- 99.1 6E-10 2.1E-14 116.3 12.0 106 17-125 130-240 (256)
82 4gmv_A RAS-associated and plec 99.0 1.1E-09 3.9E-14 115.5 10.6 105 18-125 157-266 (281)
83 1w1g_A HPDK1, 3-phosphoinositi 99.0 2E-09 6.8E-14 103.0 10.8 94 14-126 47-140 (151)
84 4bbk_A Kindlin-1, fermitin fam 98.9 3.4E-09 1.2E-13 101.1 9.5 100 20-124 27-128 (165)
85 4f7h_A Fermitin family homolog 98.9 3.9E-09 1.3E-13 101.8 9.9 101 20-125 48-150 (173)
86 2coa_A Protein kinase C, D2 ty 98.6 2E-07 6.7E-12 86.2 10.6 99 13-125 2-119 (125)
87 2d9z_A Protein kinase C, NU ty 98.5 7E-07 2.4E-11 82.8 11.9 98 14-125 3-123 (129)
88 1v5m_A SH2 and PH domain-conta 97.6 0.00066 2.3E-08 63.2 12.1 105 15-126 14-131 (136)
89 3tfm_A Myosin X; split PH doma 97.6 6.8E-05 2.3E-09 76.7 6.0 41 16-58 18-58 (228)
90 2lg1_A A-kinase anchor protein 97.3 0.00079 2.7E-08 66.8 10.1 104 17-128 69-175 (185)
91 3ml4_A Protein DOK-7; tyrosine 97.2 0.00085 2.9E-08 67.8 8.8 99 17-126 7-114 (224)
92 1v61_A RAC/CDC42 guanine nucle 97.1 0.0048 1.6E-07 57.9 12.0 87 37-129 44-130 (132)
93 3p6a_A RHO guanine nucleotide 96.8 0.0066 2.3E-07 65.9 12.1 104 16-127 256-373 (377)
94 3odw_A RHO guanine nucleotide 96.8 0.005 1.7E-07 70.6 11.5 108 16-131 409-530 (536)
95 3t06_A PDZ-rhogef, RHO guanine 96.7 0.008 2.7E-07 66.3 12.3 105 16-128 292-411 (418)
96 1xcg_A PDZ-rhogef, RHO guanine 96.4 0.021 7.3E-07 61.7 12.7 103 16-126 250-367 (368)
97 1zc3_B Exocyst complex protein 96.4 0.033 1.1E-06 50.7 11.9 102 15-125 4-107 (113)
98 3mpx_A FYVE, rhogef and PH dom 96.3 0.015 5.1E-07 64.4 10.9 99 15-126 240-338 (434)
99 1txd_A RHO guanine nucleotide 96.2 0.014 4.7E-07 63.7 10.0 105 16-128 254-372 (385)
100 1nty_A Triple functional domai 96.1 0.04 1.4E-06 58.2 13.0 103 18-127 202-310 (311)
101 1mai_A Phospholipase C delta-1 96.1 0.045 1.5E-06 50.9 11.6 40 87-127 84-123 (131)
102 1dbh_A Protein (human SOS 1); 96.0 0.048 1.6E-06 58.6 12.9 102 16-126 244-350 (354)
103 3qwm_A Iqsec1, IQ motif and SE 95.9 0.089 3E-06 49.7 12.7 105 17-125 11-122 (140)
104 2dfk_A Collybistin II; DH doma 95.8 0.08 2.7E-06 58.2 13.8 110 15-127 253-365 (402)
105 3zvr_A Dynamin-1; hydrolase, D 95.7 0.05 1.7E-06 64.8 12.4 99 19-123 540-643 (772)
106 2pz1_A RHO guanine nucleotide 95.7 0.072 2.5E-06 59.6 12.9 109 16-127 331-442 (466)
107 2rgn_B RHOA/RAC/CDC42 exchange 95.6 0.067 2.3E-06 57.8 12.2 104 17-126 205-319 (354)
108 2vrw_B P95VAV, VAV1, proto-onc 95.6 0.1 3.6E-06 57.2 13.6 105 17-127 232-337 (406)
109 1kz7_A Guanine nucleotide exch 95.5 0.11 3.8E-06 56.0 13.1 105 17-127 208-327 (353)
110 3ky9_A Proto-oncogene VAV; cal 94.6 0.18 6E-06 58.3 12.2 104 17-126 404-508 (587)
111 3o0z_A RHO-associated protein 94.5 0.97 3.3E-05 43.7 15.2 87 618-704 59-160 (168)
112 2z0q_A XPLN, RHO guanine nucle 94.3 0.18 6.2E-06 53.9 10.8 99 16-124 229-345 (346)
113 2dfs_A Myosin-5A; myosin-V, in 94.1 0.21 7.2E-06 61.8 12.1 102 584-699 923-1049(1080)
114 3ol1_A Vimentin; structural ge 93.8 0.38 1.3E-05 44.1 10.4 37 587-623 18-54 (119)
115 3jzy_A Intersectin 2; C2 domai 93.1 0.016 5.6E-07 65.2 0.0 99 17-127 251-364 (510)
116 3ksy_A SOS-1, SON of sevenless 92.6 0.32 1.1E-05 60.1 10.3 101 16-127 441-548 (1049)
117 3v5w_A G-protein coupled recep 92.4 0.44 1.5E-05 56.1 10.7 97 14-125 554-652 (689)
118 2ke4_A CDC42-interacting prote 92.4 0.43 1.5E-05 42.3 8.1 75 620-694 14-90 (98)
119 1foe_A T-lymphoma invasion and 91.6 1.7 5.7E-05 46.9 13.5 107 17-125 236-366 (377)
120 2fxo_A Myosin heavy chain, car 91.4 2.6 8.9E-05 39.0 12.7 34 612-645 67-100 (129)
121 3swk_A Vimentin; cytoskeleton, 90.4 2.2 7.6E-05 36.8 10.3 79 592-698 3-81 (86)
122 3oja_B Anopheles plasmodium-re 86.8 5.2 0.00018 45.5 13.6 34 669-702 533-566 (597)
123 2eqb_B RAB guanine nucleotide 82.9 9.2 0.00031 33.7 10.0 33 618-650 16-48 (97)
124 3mq9_A Bone marrow stromal ant 82.7 3.5 0.00012 45.8 9.4 77 618-700 394-470 (471)
125 2v71_A Nuclear distribution pr 79.2 3.3 0.00011 40.9 6.6 20 664-683 135-154 (189)
126 3na7_A HP0958; flagellar bioge 76.9 43 0.0015 34.1 14.7 33 665-697 89-121 (256)
127 3c3f_A Alpha/beta peptide with 72.5 4.4 0.00015 28.6 3.8 28 611-638 5-32 (34)
128 1z87_A Alpha-1-syntrophin; pro 72.2 5.6 0.00019 41.2 6.6 38 86-125 224-262 (263)
129 3c3g_A Alpha/beta peptide with 71.5 4.8 0.00016 28.2 3.8 28 611-638 4-31 (33)
130 1kd8_B GABH BLL, GCN4 acid bas 71.1 6.3 0.00022 28.2 4.4 29 611-639 5-33 (36)
131 3oja_B Anopheles plasmodium-re 70.2 29 0.00098 39.3 12.6 34 584-617 458-491 (597)
132 1kd8_A GABH AIV, GCN4 acid bas 69.7 7.1 0.00024 27.9 4.4 28 612-639 6-33 (36)
133 2oxj_A Hybrid alpha/beta pepti 68.5 8 0.00027 27.3 4.4 28 611-638 5-32 (34)
134 1m1j_C Fibrinogen gamma chain; 66.4 45 0.0015 36.7 12.5 88 608-697 25-115 (409)
135 3m48_A General control protein 66.3 6.6 0.00022 27.7 3.6 28 611-638 4-31 (33)
136 2hy6_A General control protein 65.2 10 0.00035 26.8 4.4 27 612-638 6-32 (34)
137 2fxo_A Myosin heavy chain, car 65.1 83 0.0028 28.7 13.5 37 612-648 32-68 (129)
138 1i84_S Smooth muscle myosin he 64.7 9 0.00031 47.9 7.4 34 618-651 917-950 (1184)
139 1uo4_A General control protein 64.3 8.5 0.00029 27.2 3.9 28 611-638 5-32 (34)
140 2p22_A Suppressor protein STP2 63.5 1.1E+02 0.0038 29.6 13.8 110 580-689 10-138 (174)
141 2wq1_A General control protein 63.4 12 0.0004 26.3 4.4 27 611-637 4-30 (33)
142 3hie_A Protein PSL1, exocyst c 62.2 31 0.0011 33.4 9.0 83 36-127 63-150 (171)
143 2dfs_A Myosin-5A; myosin-V, in 61.7 68 0.0023 39.7 14.2 27 666-692 1023-1049(1080)
144 1m1j_B Fibrinogen beta chain; 61.7 1.1E+02 0.0037 34.2 14.5 31 607-637 125-155 (464)
145 2ocy_A RAB guanine nucleotide 61.6 70 0.0024 30.4 11.2 33 619-651 49-81 (154)
146 3ghg_A Fibrinogen alpha chain; 61.2 8.1 0.00028 43.4 5.3 62 667-728 125-186 (562)
147 2w6b_A RHO guanine nucleotide 61.0 17 0.0006 28.4 5.5 35 618-652 14-48 (56)
148 2bni_A General control protein 61.0 9.4 0.00032 27.0 3.7 27 612-638 6-32 (34)
149 1gmj_A ATPase inhibitor; coile 60.9 61 0.0021 27.7 9.5 22 673-694 58-79 (84)
150 1f5n_A Interferon-induced guan 60.7 38 0.0013 39.1 11.0 52 599-650 467-523 (592)
151 3v6i_B V-type ATP synthase, su 59.5 33 0.0011 30.3 7.7 58 580-637 15-73 (105)
152 1kd8_A GABH AIV, GCN4 acid bas 57.4 16 0.00054 26.2 4.3 28 664-691 6-33 (36)
153 3o0z_A RHO-associated protein 57.0 40 0.0014 32.5 8.7 27 624-650 44-70 (168)
154 3mq9_A Bone marrow stromal ant 57.0 24 0.00083 38.9 8.5 55 587-641 395-463 (471)
155 3ra3_B P2F; coiled coil domain 56.9 8.1 0.00028 25.4 2.6 21 667-687 8-28 (28)
156 3tnu_A Keratin, type I cytoske 56.5 64 0.0022 29.6 9.9 61 626-699 43-103 (131)
157 3he5_A Synzip1; heterodimeric 56.2 37 0.0013 24.9 6.3 16 675-690 33-48 (49)
158 1wt6_A Myotonin-protein kinase 55.1 33 0.0011 29.1 6.8 50 590-639 11-70 (81)
159 1g6u_A Domain swapped dimer; d 55.0 17 0.00057 26.6 4.3 25 673-697 20-44 (48)
160 2adz_A Alpha-1-syntrophin; pro 54.6 17 0.00059 35.4 5.8 37 87-125 140-177 (178)
161 3a58_A Exocyst complex compone 54.6 37 0.0013 35.7 8.6 84 34-126 131-219 (320)
162 4dzn_A Coiled-coil peptide CC- 54.5 25 0.00085 23.9 4.7 24 674-697 3-26 (33)
163 1cxz_B Protein (PKN); protein- 54.4 56 0.0019 28.1 8.3 54 626-697 23-80 (86)
164 3k29_A Putative uncharacterize 52.2 1.6E+02 0.0056 28.2 11.9 76 613-701 19-106 (169)
165 1kd8_B GABH BLL, GCN4 acid bas 52.1 25 0.00087 25.1 4.7 28 664-691 6-33 (36)
166 3thf_A Protein shroom; coiled- 51.5 1.1E+02 0.0039 29.9 10.9 113 583-698 20-187 (190)
167 1ses_A Seryl-tRNA synthetase; 51.5 70 0.0024 35.2 10.9 67 625-700 32-98 (421)
168 3ibp_A Chromosome partition pr 51.4 65 0.0022 33.8 9.8 65 609-673 12-76 (302)
169 1cxz_B Protein (PKN); protein- 50.8 35 0.0012 29.4 6.4 26 578-603 14-39 (86)
170 2l5g_B Putative uncharacterize 50.1 30 0.001 25.8 5.0 30 670-699 6-35 (42)
171 1fho_A UNC-89; pleckstrin homo 50.0 23 0.00079 32.1 5.6 100 18-125 9-112 (119)
172 2e7s_A RAB guanine nucleotide 49.8 35 0.0012 31.8 6.7 51 624-705 42-92 (135)
173 3a7p_A Autophagy protein 16; c 49.7 1.2E+02 0.0042 28.7 10.5 113 566-701 18-138 (152)
174 2wq1_A General control protein 49.6 22 0.00076 25.0 4.0 25 664-688 5-29 (33)
175 3m48_A General control protein 48.2 20 0.0007 25.2 3.6 24 664-687 5-28 (33)
176 3lay_A Zinc resistance-associa 47.8 1.1E+02 0.0037 29.6 10.3 72 615-699 72-143 (175)
177 3tnu_B Keratin, type II cytosk 47.1 1.1E+02 0.0037 27.9 9.8 61 626-699 41-101 (129)
178 3bas_A Myosin heavy chain, str 46.9 45 0.0016 28.6 6.7 28 610-637 59-86 (89)
179 1uo4_A General control protein 45.5 24 0.00081 25.0 3.6 24 664-687 6-29 (34)
180 3ulb_A Target of rapamycin com 44.7 1.2E+02 0.0041 27.7 9.3 84 38-125 28-114 (121)
181 3c3f_A Alpha/beta peptide with 44.2 26 0.00088 24.8 3.6 25 664-688 6-30 (34)
182 1i84_S Smooth muscle myosin he 43.2 31 0.001 43.1 7.0 10 288-297 436-445 (1184)
183 1l8d_A DNA double-strand break 42.1 1.5E+02 0.0051 25.9 9.6 25 614-638 17-41 (112)
184 1x79_B RAB GTPase binding effe 41.9 1.9E+02 0.0067 25.9 11.0 69 620-694 5-73 (112)
185 2r2v_A GCN4 leucine zipper; co 41.3 43 0.0015 23.7 4.4 26 612-637 6-31 (34)
186 2dq3_A Seryl-tRNA synthetase; 40.8 1.1E+02 0.0038 33.5 10.4 69 621-698 30-100 (425)
187 3ol1_A Vimentin; structural ge 40.8 2E+02 0.0069 25.8 12.4 30 620-649 61-90 (119)
188 4etp_A Kinesin-like protein KA 40.4 39 0.0013 37.0 6.6 45 612-656 15-59 (403)
189 3ghg_C Fibrinogen gamma chain; 40.2 1.9E+02 0.0064 31.8 11.8 89 608-698 25-116 (411)
190 2w83_C C-JUN-amino-terminal ki 39.8 33 0.0011 28.8 4.3 49 586-638 27-75 (77)
191 1fxk_A Prefoldin; archaeal pro 39.7 1.2E+02 0.0039 26.2 8.4 84 618-701 12-100 (107)
192 2dq0_A Seryl-tRNA synthetase; 39.2 1.2E+02 0.0041 33.6 10.4 34 667-700 70-103 (455)
193 1fmh_A General control protein 39.2 62 0.0021 22.0 4.8 26 669-694 4-29 (33)
194 2pnv_A Small conductance calci 38.4 51 0.0017 24.7 4.8 31 608-638 10-40 (43)
195 3mq7_A Bone marrow stromal ant 37.7 2.3E+02 0.0079 25.6 11.5 30 674-703 72-101 (121)
196 3he4_A Synzip6; heterodimeric 37.6 13 0.00044 28.1 1.4 42 592-637 6-47 (56)
197 3qne_A Seryl-tRNA synthetase, 37.6 67 0.0023 36.1 8.0 33 668-700 73-105 (485)
198 3s4r_A Vimentin; alpha-helix, 37.6 1.6E+02 0.0055 25.4 8.8 24 672-695 69-92 (93)
199 3lbx_B Beta-I spectrin, spectr 37.1 1.8E+02 0.006 27.5 10.1 114 580-694 39-171 (185)
200 3qr0_A Phospholipase C-beta (P 37.0 1E+02 0.0034 37.0 9.8 37 89-125 104-142 (816)
201 1uii_A Geminin; human, DNA rep 36.3 89 0.0031 26.6 6.6 28 669-696 49-76 (83)
202 2xus_A Breast cancer metastasi 36.2 34 0.0012 26.4 3.6 21 681-701 14-34 (49)
203 2v71_A Nuclear distribution pr 36.0 2.6E+02 0.009 27.3 11.0 22 675-696 90-111 (189)
204 2zkm_X 1-phosphatidylinositol- 35.8 1.3E+02 0.0045 35.8 10.6 38 89-126 97-136 (799)
205 3oja_A Leucine-rich immune mol 35.6 1.4E+02 0.0047 32.9 10.2 32 611-642 357-388 (487)
206 3edu_A Beta-I spectrin, spectr 35.4 2.1E+02 0.0072 27.5 10.6 120 580-699 36-173 (218)
207 2zqm_A Prefoldin beta subunit 35.1 1.9E+02 0.0066 25.1 9.3 32 618-649 17-48 (117)
208 3pk1_B Apoptosis regulator BAX 34.9 16 0.00055 25.8 1.5 15 596-610 17-31 (34)
209 1urf_A Protein kinase C-like 1 34.8 93 0.0032 26.4 6.4 66 627-703 7-73 (81)
210 3c3g_A Alpha/beta peptide with 34.0 47 0.0016 23.4 3.6 25 664-688 5-29 (33)
211 1quu_A Human skeletal muscle a 33.9 3.5E+02 0.012 26.5 13.8 115 578-692 48-188 (250)
212 3a98_B Engulfment and cell mot 33.1 1.6E+02 0.0056 29.0 9.2 36 89-126 116-151 (203)
213 2v4h_A NF-kappa-B essential mo 32.8 1.2E+02 0.004 27.3 7.1 34 605-638 64-107 (110)
214 3ni0_A Bone marrow stromal ant 31.9 62 0.0021 28.2 5.0 35 607-641 50-87 (99)
215 2z5i_A TM, general control pro 31.6 67 0.0023 24.9 4.8 31 672-702 4-34 (52)
216 3ra3_A P1C; coiled coil domain 31.3 22 0.00077 23.3 1.6 20 674-693 8-27 (28)
217 3lss_A Seryl-tRNA synthetase; 31.0 1.1E+02 0.0039 34.2 8.5 34 667-700 100-138 (484)
218 1c1g_A Tropomyosin; contractIl 31.0 3.6E+02 0.012 25.8 14.6 101 581-698 180-283 (284)
219 4f61_I Stathmin-like domain R4 30.5 98 0.0033 31.4 7.0 50 599-648 127-187 (240)
220 3mq7_A Bone marrow stromal ant 30.4 1.8E+02 0.0063 26.2 7.9 32 608-639 58-89 (121)
221 3m0d_C TNF receptor-associated 30.4 1.3E+02 0.0043 24.2 6.5 56 581-636 5-63 (65)
222 3ghg_A Fibrinogen alpha chain; 30.4 1.9E+02 0.0063 32.7 9.7 46 621-683 110-155 (562)
223 2yy0_A C-MYC-binding protein; 29.9 72 0.0024 24.8 4.7 35 664-698 17-51 (53)
224 4dzn_A Coiled-coil peptide CC- 29.5 96 0.0033 21.1 4.5 28 668-695 4-31 (33)
225 2lf0_A Uncharacterized protein 28.9 1.9E+02 0.0064 26.3 7.7 52 625-688 7-58 (123)
226 1joc_A EEA1, early endosomal a 28.8 72 0.0025 29.0 5.3 33 668-700 6-38 (125)
227 4dac_A Computationally designe 28.7 11 0.00037 24.8 -0.2 17 673-689 8-24 (28)
228 2lw1_A ABC transporter ATP-bin 28.6 52 0.0018 28.0 4.1 27 672-698 21-47 (89)
229 3he5_B Synzip2; heterodimeric 28.5 1.8E+02 0.0061 21.6 6.2 16 671-686 36-51 (52)
230 1wle_A Seryl-tRNA synthetase; 28.2 2.9E+02 0.01 31.0 11.3 35 666-700 116-150 (501)
231 3ra3_A P1C; coiled coil domain 28.2 70 0.0024 21.0 3.5 24 674-697 1-24 (28)
232 3u06_A Protein claret segregat 28.0 61 0.0021 35.6 5.5 47 612-658 15-61 (412)
233 3he4_A Synzip6; heterodimeric 28.0 50 0.0017 24.9 3.2 12 675-686 40-51 (56)
234 3hnw_A Uncharacterized protein 27.9 3.6E+02 0.012 24.9 10.5 20 669-688 113-132 (138)
235 2oxj_A Hybrid alpha/beta pepti 27.5 69 0.0024 22.7 3.6 25 664-688 6-30 (34)
236 1ci6_A Transcription factor AT 27.4 1.3E+02 0.0044 24.0 6.0 21 618-638 13-33 (63)
237 2bni_A General control protein 27.3 70 0.0024 22.7 3.6 24 664-687 6-29 (34)
238 2wt7_A Proto-oncogene protein 27.3 2.3E+02 0.008 22.4 7.6 45 616-691 18-62 (63)
239 3swy_A Cyclic nucleotide-gated 27.3 1.3E+02 0.0043 22.9 5.4 38 578-615 1-38 (46)
240 2oqq_A Transcription factor HY 27.2 85 0.0029 23.3 4.3 27 610-636 6-32 (42)
241 3swf_A CGMP-gated cation chann 27.1 1.8E+02 0.0063 24.2 6.9 33 580-612 5-37 (74)
242 3nmd_A CGMP dependent protein 27.1 2.4E+02 0.0083 23.4 7.6 44 630-698 21-65 (72)
243 2pnv_A Small conductance calci 26.7 59 0.002 24.4 3.4 22 676-697 19-40 (43)
244 4dci_A Uncharacterized protein 26.6 4.1E+02 0.014 25.0 12.0 44 664-707 67-111 (150)
245 1t2k_D Cyclic-AMP-dependent tr 26.3 1E+02 0.0035 24.3 5.2 21 669-689 39-59 (61)
246 2wvr_A Geminin; DNA replicatio 26.2 1.2E+02 0.0042 29.9 6.6 20 674-693 123-142 (209)
247 2hy6_A General control protein 25.6 92 0.0032 22.0 4.0 26 664-689 6-31 (34)
248 2r2v_A GCN4 leucine zipper; co 25.0 82 0.0028 22.3 3.6 24 664-687 6-29 (34)
249 2cly_A ATP synthase B chain, m 25.0 3.3E+02 0.011 27.1 9.7 51 602-652 128-183 (214)
250 4g2k_A General control protein 24.9 82 0.0028 28.6 4.7 47 663-709 18-64 (125)
251 3u1c_A Tropomyosin alpha-1 cha 24.2 3.5E+02 0.012 23.4 11.0 33 613-645 29-62 (101)
252 1nkp_B MAX protein, MYC proto- 23.6 1E+02 0.0036 25.7 5.0 31 667-697 48-78 (83)
253 3kbt_A Beta-I spectrin, spectr 23.5 4.4E+02 0.015 26.6 11.0 117 580-697 145-280 (326)
254 4emc_A Monopolin complex subun 23.1 2.2E+02 0.0076 27.8 7.7 13 626-638 25-37 (190)
255 1wlq_A Geminin; coiled-coil; 2 22.9 1.7E+02 0.006 24.8 6.1 29 669-697 41-69 (83)
256 3u59_A Tropomyosin beta chain; 22.3 3.8E+02 0.013 23.1 11.0 26 613-638 29-54 (101)
257 1lwu_C Fibrinogen gamma chain; 22.3 1.1E+02 0.0037 32.6 5.9 28 667-694 27-54 (323)
258 1s1c_X RHO-associated, coiled- 22.1 2.9E+02 0.0098 22.9 7.1 18 627-644 34-55 (71)
259 1ik9_A DNA repair protein XRCC 21.8 1.9E+02 0.0065 28.8 7.3 29 612-640 184-212 (213)
260 1f5n_A Interferon-induced guan 21.6 7.1E+02 0.024 28.4 13.1 62 621-695 519-582 (592)
261 3ohm_B 1-phosphatidylinositol- 20.8 1.6E+02 0.0054 35.6 7.6 37 89-125 101-139 (885)
262 2jee_A YIIU; FTSZ, septum, coi 20.5 3.5E+02 0.012 22.9 7.5 62 583-648 14-76 (81)
263 2jee_A YIIU; FTSZ, septum, coi 20.4 2.1E+02 0.0072 24.3 6.1 33 664-696 11-43 (81)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=6.7e-41 Score=342.36 Aligned_cols=203 Identities=26% Similarity=0.399 Sum_probs=177.2
Q ss_pred cccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCC--CC
Q 004320 154 QWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSA--DE 229 (761)
Q Consensus 154 ~~k~k~~~~~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~--~~ 229 (761)
.++.++..+..+||+||..++.+ +..||.+|.+|+.||+++|+.+|||||++|+...|++|++.||+|. .++.. ..
T Consensus 8 ~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~ 87 (214)
T 3byi_A 8 TLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWE 87 (214)
T ss_dssp HHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGC
T ss_pred hHHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCccccc
Confidence 34556677788999999999975 5689999999999999999999999999999999999999999985 33322 25
Q ss_pred CccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCC
Q 004320 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (761)
Q Consensus 230 D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkM 309 (761)
|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+.|++.|||
T Consensus 88 dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM 166 (214)
T 3byi_A 88 DIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLM 166 (214)
T ss_dssp SHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred chHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 9999999999999999999999999999999999989999999999966 599999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCc
Q 004320 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (761)
Q Consensus 310 ta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~ 375 (761)
|+.|||+||||+|+|++.... +. +.....++.+|++||+||+.||+++
T Consensus 167 ~~~NLa~vf~P~Ll~~~~~~~------------~~------~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 167 STQSLGIVFGPTLLRAENETG------------NM------AIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp CHHHHHHHHHHHHHCCTTSSS------------CH------HHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CHHHhHHHhccccCCCCCccH------------HH------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999873210 00 1123457889999999999999874
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=337.29 Aligned_cols=196 Identities=24% Similarity=0.400 Sum_probs=172.7
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhH
Q 004320 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslL 238 (761)
.+.++.+||+||..++++ ++||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.|........|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 455678999999999875 5799999999999999999999999999999999999999999975555678999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL-DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhh
Confidence 9999999999999999999999999989999999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
||+|||++..... .. .......++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~--------------~~--~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSP--------------EL--ENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCH--------------HH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCCh--------------HH--HHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999999842211 11 11223556778999999999998
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.5e-40 Score=338.53 Aligned_cols=198 Identities=22% Similarity=0.398 Sum_probs=175.1
Q ss_pred CCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCC-CCCCccchHHhH
Q 004320 161 VKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCV 238 (761)
Q Consensus 161 ~~~~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~-~~~D~h~vAslL 238 (761)
.++.+||+||..++.....||.+|.+|+.||+++|+.+|||||++|+..++++|++.|++|.. .+. .+.|+|+||++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHH
Confidence 346799999999998878899999999999999999999999999999999999999999853 222 247999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||||.++|+.|+.+.+..+.++++..++.+| .+||+.|+.+|+||+.||++|+++++.||||+.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 9999999999999999999999999999899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCccc
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (761)
||+|+|++..+...+. .+...+.+|++||+||+.||++++.
T Consensus 167 ~P~L~~~~~~~~~~l~------------------~~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 167 WPTLMRPDFENREFLS------------------TTKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHSCCCCCSSCCSC------------------CCTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred cccccCCCCccHHHHH------------------HhHHHHHHHHHHHHhhHHHcCCCCC
Confidence 9999998743211111 0134568999999999999998663
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=340.10 Aligned_cols=208 Identities=20% Similarity=0.286 Sum_probs=167.4
Q ss_pred ccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCC----C
Q 004320 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD----E 229 (761)
Q Consensus 155 ~k~k~~~~~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~----~ 229 (761)
+++++..+.++||+||..++.+ +..||.+|.+|+.||+++|+ +|||||++|+...+++|++.|+.|....... .
T Consensus 11 ~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~ 89 (229)
T 3iug_A 11 RENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQ 89 (229)
T ss_dssp -------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTT
T ss_pred cCCCCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCcccccccc
Confidence 4555666788999999998875 56799999999999999999 8999999999999999999999986433222 5
Q ss_pred CccchHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCC
Q 004320 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (761)
Q Consensus 230 D~h~vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkM 309 (761)
|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|++|++.|||
T Consensus 90 dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 168 (229)
T 3iug_A 90 DIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITNM 168 (229)
T ss_dssp CHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred chHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCC
Confidence 9999999999999999999999999999999999999999999999966 599999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 310 ta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
|+.|||+||||+|||++..... ... ..+........+.+|++||+||+.||+++.
T Consensus 169 ~~~NLAivf~P~Ll~~~~~~~~------~~~------~~~~~~~~~~~~~vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 169 HAKNLAIVWAPNLLRSKQIESA------CFS------GTAAFMEVRIQSVVVEFILNHVDVLFSGRI 223 (229)
T ss_dssp CHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC---
T ss_pred ChHHHHHHHhccccCCCccccc------ccc------hHHHHHHHHHHHHHHHHHHHhHHHhCCCcH
Confidence 9999999999999998732110 000 011222345567899999999999999876
No 5
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=328.53 Aligned_cols=192 Identities=18% Similarity=0.333 Sum_probs=170.8
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-C-ccCC--CCCCccchHHh
Q 004320 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (761)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~-~~~~--~~~D~h~vAsl 237 (761)
.++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+..++++|++.||+| . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 46999999999976 467999999999999999999999999999999999999999985 3 3333 23699999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhh
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAiv 317 (761)
||.|||+||+||||.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|++|++.||||+.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
|||+|+|++..+ . +..+......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987311 1 1223345678899999999999998
No 6
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=8.8e-40 Score=330.22 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=169.4
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccch
Q 004320 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~---~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~v 234 (761)
++.+.++||+||..++++.. .||.+|.+|+.||+++|+.+|||||++|+..+++++++.||+|.. ++....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 45667899999999998643 799999999999999999999999999999999999999999963 34334699999
Q ss_pred HHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccch
Q 004320 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (761)
Q Consensus 235 AslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NL 314 (761)
|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999997764 4578899999966 69999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 315 AivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
|+||||+|+|++.. .. .+.....++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~---------------~~----~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA---------------AI----TLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH---------------HH----HHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HhhhcccccCCCCc---------------cc----cHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998621 00 12234567899999999999998
No 7
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=340.51 Aligned_cols=196 Identities=23% Similarity=0.457 Sum_probs=174.6
Q ss_pred CCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCC-CCCCccchHHh
Q 004320 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDC 237 (761)
Q Consensus 160 ~~~~~vFGvpL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~-~~~D~h~vAsl 237 (761)
..++.+||+||..++...+.||.+|.+|+.||+++|+.+|||||++|+...|++|++.||.|.. ++. .+.|||+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred ccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHH
Confidence 3456899999999998888999999999999999999999999999999999999999999863 322 34699999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhh
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAiv 317 (761)
||.|||+||+||||+++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.+++.|+||+.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCC
Q 004320 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (761)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (761)
|||+|||+.... + .++..+..++.+|++||+||+.||.+
T Consensus 207 f~P~Llrp~~~~---~---------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 207 FWPTLMRPDFST---M---------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHCCCSSS---S---------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred hcccccCCCCcc---H---------------HHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 999999986321 0 11233456779999999999999986
No 8
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=1.4e-39 Score=336.58 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=155.0
Q ss_pred cccccchHHHhhhcC----CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHH-HHhcCC---ccCC--CCCCccc
Q 004320 164 LVVGRPILLALEDID----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHV 233 (761)
Q Consensus 164 ~vFGvpL~~ll~~~~----~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~-~ld~g~---~~~~--~~~D~h~ 233 (761)
++||+||...+++.. .+|.+|.+|+.||+++|+.+|||||++|+..+|+++++ .+|.|. +++. ...|+|+
T Consensus 17 pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~ 96 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKT 96 (231)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHH
T ss_pred CccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHH
Confidence 389999998887533 36999999999999999999999999999999999987 578763 3332 2479999
Q ss_pred hHHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccc
Q 004320 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (761)
Q Consensus 234 vAslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~N 313 (761)
||++||.|||+||+||||+++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|++|++.||||+.|
T Consensus 97 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 175 (231)
T 1f7c_A 97 ITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN 175 (231)
T ss_dssp HHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999966 6999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 314 LAivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
||+||||+|||++..+... +......+.+|++||+||+.||++.+
T Consensus 176 LAivf~P~Ll~~~~~~~~~------------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 176 LGVVFGPTLLRPQEETVAA------------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHSCC---CCSG------------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHhccccCCCCcccHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987322111 11234567899999999999999876
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=9.5e-39 Score=332.50 Aligned_cols=197 Identities=24% Similarity=0.367 Sum_probs=169.5
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccch
Q 004320 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~---~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~v 234 (761)
.+.+..+||+||..++.+.+ .||.+|.+|+.||+++|+.+|||||++|+...+++|++.||+|.. ++....|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45567899999999997643 799999999999999999999999999999999999999999963 34334699999
Q ss_pred HHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccch
Q 004320 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (761)
Q Consensus 235 AslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NL 314 (761)
|++||.|||+||+||||.++|+.|+.+... +.++++..++.+| .+||+.|+.+|+||+.||++|++|++.||||+.||
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999997765 4578899999966 69999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 315 AivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
|+||||+|+|++.. .. .+.....++.+|++||+||+.||++..
T Consensus 196 Aivf~P~Ll~~~~~---------------~~----~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 196 AVVFGPNLLWAKDA---------------AI----TLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHCCCSSH---------------HH----HHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhhcchhCCCCCc---------------cc----cHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999998621 01 122345678899999999999998765
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=1.8e-38 Score=325.03 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=158.5
Q ss_pred CcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchHHhH
Q 004320 163 SLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (761)
Q Consensus 163 ~~vFGvpL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vAslL 238 (761)
+.+||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+... ++|++.||+|. ......+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 458999999999863 579999999999999999999999999999999 99999999984 2333567999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHhccccCCCCccchh
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~-~~~~e~ri~~lk~lIl~--~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLA 315 (761)
|.|||+||+||||+++|+.|+.+.+ ..+.++++..++.+| . +||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999986 677889999999855 6 89999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
+||||+|||++..+ .. .. ..++.+|++||+||+.||+..+
T Consensus 163 ivf~P~Ll~~~~~~--------------~~------~~-~~~~~vve~LI~~~~~iF~~~P 202 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------SD------NT-ENLIKVIEILISTEWNERQPAP 202 (216)
T ss_dssp HHHHHHHHTCSSCC--------------HH------HH-HHHHHHHHHHHHTTC-------
T ss_pred HHHhhhcCCCCCCc--------------hh------hh-HHHHHHHHHHHhhhHHhcCCCC
Confidence 99999999987321 00 11 5678999999999999999864
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=321.39 Aligned_cols=209 Identities=22% Similarity=0.331 Sum_probs=168.0
Q ss_pred CCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-CccCCCCCCccchHHhH
Q 004320 161 VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCV 238 (761)
Q Consensus 161 ~~~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~~~~~D~h~vAslL 238 (761)
..+++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+...|++|++.|+.+ ........|+|+||++|
T Consensus 16 ~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 95 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML 95 (228)
T ss_dssp CTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred CCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence 3567999999999875 567999999999999999999999999999999999999999875 34445678999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||||.++|+.|+.+.+..+.++++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+||+.|||+||
T Consensus 96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 174 (228)
T 3kuq_A 96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI-MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174 (228)
T ss_dssp HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHH
Confidence 9999999999999999999999999888889999999976 599999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCC--CCCchHHHHHHHHHhhHHHHHHHHHHHhcccc
Q 004320 319 APLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~--~g~~~aql~~a~~~~~~~~~iVe~LIen~~~I 371 (761)
||+|||++..... ..++..+ ++.........+.....+..++.+||+||+.|
T Consensus 175 ~P~Ll~~~~~~~~-s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 175 APSLFHLNTLKRE-NSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhcCCCCCCCC-CCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998753211 1111100 00000111122334445778999999999875
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=309.46 Aligned_cols=190 Identities=17% Similarity=0.257 Sum_probs=165.4
Q ss_pred cchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCC-CCccchHHhHHHhhhc
Q 004320 168 RPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSAD-EDAHVIGDCVKHVLRE 244 (761)
Q Consensus 168 vpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~-~D~h~vAslLK~fLRe 244 (761)
..|.+++.. ...||.+|.+|++||+++|+.+|||||++|+..++++|++.|++|. ...... .|+|+||++||.|||+
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flre 83 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRN 83 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHh
Confidence 356666654 5679999999999999999999999999999999999999999995 333334 4999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccC
Q 004320 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (761)
Q Consensus 245 LPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr 324 (761)
||+||||.++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+++ +.|||++.|||+||||+|||
T Consensus 84 LpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 84 LKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAV-GELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp SSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence 9999999999999999999999899999999966 599999999999999999999997 68999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCC
Q 004320 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (761)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (761)
++..+. + . .+.+..+..++.+|++||+||+.||+.
T Consensus 162 ~~~~~~-----------~-~---~~~~~~~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 162 HAVPNP-----------D-P---VTMLQDIKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp CSSSSC-----------C-H---HHHHHHHHHHHHHHHHHHHSCHHHHHG
T ss_pred CCCCCC-----------C-H---HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 863211 0 1 123445677889999999999999986
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=320.29 Aligned_cols=200 Identities=23% Similarity=0.298 Sum_probs=157.6
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccch
Q 004320 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVI 234 (761)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~v 234 (761)
.+.++++||+||..+++. .+.||.+|.+|+.||++ |+.+|||||++|+...+++|++.||.|... ....|+|+|
T Consensus 58 ~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~v 135 (271)
T 3eap_A 58 TEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI 135 (271)
T ss_dssp ---CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cccccHHHH
Confidence 445678999999998763 34699999999999975 899999999999999999999999999654 346799999
Q ss_pred HHhHHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccch
Q 004320 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (761)
Q Consensus 235 AslLK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NL 314 (761)
|++||.|||+||+||||+++|+.|+.+.... .++++..++.++ ..||+.|+.+|+||+.||++|+++++.|+||+.||
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 213 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLLS-CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 9999999999999999999999999998874 466788888754 68999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 315 AivfaP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
|+||||+|||++.... .+ ... ..........+|++||+||+.||..+.
T Consensus 214 Aivf~P~Ll~~~~~~~-~~----------~~~---~~~~~~~~~~vve~LI~~~~~IF~vp~ 261 (271)
T 3eap_A 214 AVIFAPNLLQTSEGHE-KM----------SSN---TEKKLRLQAAVVQTLIDYASDIGRVPD 261 (271)
T ss_dssp HHHHHHHHHTCCCCCT-TC----------CHH---HHHHHHHHHHHHHHHHHTGGGTTCCCH
T ss_pred HHHHHhHhccCCCCcc-ch----------hhh---HHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 9999999999873211 01 111 112234567899999999999997654
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=4e-35 Score=331.85 Aligned_cols=192 Identities=17% Similarity=0.317 Sum_probs=170.3
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC--ccCC--CCCCccchHHh
Q 004320 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (761)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~--~~~~--~~~D~h~vAsl 237 (761)
..+||+||..++++ ...||.+|.+|+.||+++|+.+|||||++|+...|++|++.||.+. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 57999999999975 5679999999999999999999999999999999999999999852 3332 23699999999
Q ss_pred HHHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhh
Q 004320 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (761)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAiv 317 (761)
||.|||+||+||||.++|+.|+.+....+.++++..++.+| ..||++|+.+|++|+.||++|+.+++.|+||+.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999976 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 004320 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (761)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF 372 (761)
|||+||+++..+.. . .+......+.+|++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~--~---------------~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAM--A---------------ALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTT--G---------------GGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccHH--H---------------HHHHHHHHHHHHHHHHhchhhcC
Confidence 99999998743211 0 01123456789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=306.88 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=141.4
Q ss_pred CCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhH
Q 004320 162 KSLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (761)
Q Consensus 162 ~~~vFGvpL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslL 238 (761)
..++||+||..++++ .+.||.+|.+|+.||+++|+.+|||||++|+. +++ .+........|+|+||++|
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lL 90 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGI 90 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHH
Confidence 356999999999983 35799999999999999999999999999998 333 2222233458999999999
Q ss_pred HHhhhcCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhc
Q 004320 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (761)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivf 318 (761)
|.|||+||+||||.++|+.|+.+.+..+..+++. . ++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||
T Consensus 91 K~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 166 (214)
T 2xs6_A 91 KSFLLALPAPLVTPEASAEARRALREAAGPVGPA---L-EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATF 166 (214)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---G-STTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---H-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHH
Confidence 9999999999999999999999998765544444 3 45799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcccccCCcc
Q 004320 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (761)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~aql~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (761)
||+|||++..... . .......+.+......+.+|++||+| .||+.+.
T Consensus 167 ~P~Ll~~~~~~~~---~------~~~~~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 167 GPLLLRAPPPPSS---P------PPGGAPDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred hhhhcCCcccccc---c------ccccchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999999842100 0 00000011123345678999999976 4787653
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=2.5e-31 Score=292.18 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=129.8
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchHHhHHHhhhcCCCCCCChhhHHHH
Q 004320 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (761)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vAslLK~fLReLPePLlp~~ly~~l 258 (761)
.||.+|.+|+.||+++|+.+|||||++|+..++++|++.||.|..... ..|+|+||++||.|||+||+||||+++|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999965433 3499999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCccchhhhccccccCCCC
Q 004320 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (761)
Q Consensus 259 l~~~~~~~~e~ri~~lk~lIl~~LP~~N~~lL~~Ll~fL~~Va~~s~~NkMta~NLAivfaP~Llr~~~ 327 (761)
+.+... ...++.+| .+||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||+|||++.
T Consensus 277 ~~~~~~------~~~~~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYD------PRICRQVI-SQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTC------HHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhh------HHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 998774 23567755 599999999999999999999999999999999999999999999983
No 17
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.72 E-value=1.7e-17 Score=154.93 Aligned_cols=105 Identities=27% Similarity=0.427 Sum_probs=77.4
Q ss_pred CCCCcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEc----CCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCc
Q 004320 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFK----NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK 88 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYK----d~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk 88 (761)
.++.+..++|||| |+|+ .+|.||||||||+++.|+||+ ++.+..|.+ .+.|.++.|..+........++
T Consensus 3 ~~p~n~~~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G----~I~L~g~tV~~~~~~~~~~~~k 76 (126)
T 1wi1_A 3 SGSSGMKHSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQE----LLQLDGYTVDYTDPQPGLEGGR 76 (126)
T ss_dssp CCCCCEEEEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSE----EEECSSCEEEECCCCSSCCSCS
T ss_pred CCCCCCceeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCce----EEECCCcEEEEecCCcccccCc
Confidence 3455789999776 7766 579999999999999999999 777666443 3455555544321111113466
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
++|.+.. .+++|+|+|++++||..||.||..|+.++
T Consensus 77 ~~F~~v~---~~~ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 77 AFFNAVK---EGDTVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp SEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred eEEEEec---CCceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 8886654 36789999999999999999999999754
No 18
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.70 E-value=8.9e-17 Score=155.16 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=76.5
Q ss_pred CCCCCCCCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee---c
Q 004320 8 FERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R 84 (761)
Q Consensus 8 ~~~~~~~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~---~ 84 (761)
.++.+....+ ++|+|||+ |+|+..+.|++|||||+++.|+||+++.+..+ .+.|+|..++.+.. .
T Consensus 8 ~~~~~~~~~p-v~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~---------~g~I~L~~~~~~~~~~~~ 75 (149)
T 1x1f_A 8 QERLKITALP-LYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSIIY---------VDKLDIVDLTCLTEQNST 75 (149)
T ss_dssp CCCCSCSSSC-EEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSSC---------SEECCCSSCCEEEECCCT
T ss_pred hhcccCCCCC-ccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCcccc---------CcEEECCCceEEeeccCC
Confidence 3444433333 99999555 88888899999999999999999999887653 23455555433311 1
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
..+.++|.|.. .+++|+|+|+|.+|+++||.+|+.++.
T Consensus 76 ~~~~~~F~I~t---~~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 76 EKNCAKFTLVL---PKEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp TSCCCEEEEEC---SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcCcEEEEEc---CCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 22346787754 378999999999999999999999986
No 19
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.69 E-value=1e-16 Score=151.29 Aligned_cols=104 Identities=24% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
.+..|+|+|||+ |+| ..+.|++|||||+++.|+||+++.+..|.+ .++|.++.+... ....+++||.|.
T Consensus 4 ~~~~v~k~GwL~--K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~p~G----~I~L~~~~v~~~----~~~~~~~~F~i~ 72 (130)
T 1v88_A 4 GSSGIVMADWLK--IRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQWVG----TVLLNACEIIER----PSKKDGFCFKLF 72 (130)
T ss_dssp SSSSCCEEEEEE--ECC-SSSSCEEEEEEEETTEEEEESCSSSCCCCE----EEECSSCEECCC----CTTTSSCEEEEE
T ss_pred CCCceEEEeEEE--EeC-CCCCceEEEEEEECCEEEEECCCCCCCceE----EEEcCCCEEEEC----CCCCCCeEEEEE
Confidence 456789999665 777 789999999999999999999988755322 334444433221 112344889886
Q ss_pred ecCCC---------------------CceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 95 PDGRD---------------------GRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 95 ~~~~~---------------------grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
..... .++|+|+|+|++|+++||.||+.++...|.
T Consensus 73 ~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~~ 128 (130)
T 1v88_A 73 HPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128 (130)
T ss_dssp CTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 42110 245999999999999999999999986654
No 20
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=138.66 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=70.5
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~ 98 (761)
|.|+|||+ |+|...++|++|||||+++.|+||+++.+.... +.+.+++..+.. ......+++|.+..
T Consensus 1 V~k~G~L~--K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~-------~~~~i~l~~~~~-~~~~~~~~~F~i~~--- 67 (94)
T 2rsg_A 1 VERCGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-------CRGSICLSKAVI-TPHDFDECRFDISV--- 67 (94)
T ss_dssp CCEEEEEE--EESSSTTCEEEEEEEEETTEEEEESSTTGGGTC-------CSEEEETTTCEE-EECSSCSSEEEEEE---
T ss_pred CCEEEEEE--EeCCCCCCceEEEEEEECCEEEEEEeccccccc-------ceeeEecceeee-ecCcccceeEEEEe---
Confidence 57999666 888889999999999999999999987654322 233355544332 23345567787765
Q ss_pred CCceEEEEecChHHHHHHHHHHHHH
Q 004320 99 DGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 99 ~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
++|+|+|+|+|++|+++||.||+.|
T Consensus 68 ~~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 68 NDSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp TTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHhh
Confidence 3799999999999999999999976
No 21
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.65 E-value=6.8e-16 Score=140.22 Aligned_cols=99 Identities=19% Similarity=0.331 Sum_probs=75.8
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEEE
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~---~~~~kk~~Fvi 93 (761)
..++++|||+ |+|...+.|++|||||+++.|+||++..+..| .+.|.|..+..+. ....++++|.|
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~~~~~~~~~~~~~~~F~i 71 (113)
T 1pls_A 3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP---------KGMIPLKGSTLTSPCQDFGKRMFVFKI 71 (113)
T ss_dssp CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSSC---------SEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred CCCcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCCCc---------ceEEEcCCCEEEEecCCCCCCccEEEE
Confidence 4678999555 88888899999999999999999999866542 3345555544322 12345578888
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
.. .++++|+|+|+|.+|+.+|+.+|+.++...+
T Consensus 72 ~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~ 104 (113)
T 1pls_A 72 TT--TKQQDHFFQAAFLEERDAWVRDINKAIKCIE 104 (113)
T ss_dssp EE--TTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred Ec--CCCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence 65 2469999999999999999999999997543
No 22
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.65 E-value=9.5e-16 Score=139.43 Aligned_cols=108 Identities=23% Similarity=0.414 Sum_probs=77.6
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
....++++|||+ |+|...+.|++|||||+++.|+||++..+..|.+ .++|.++.+..... .....++++|.|.
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g----~i~L~~~~v~~~~~-~~~~~~~~~f~i~ 76 (118)
T 1v89_A 4 GSSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQG----CMYLPGCTIKEIAT-NPEEAGKFVFEII 76 (118)
T ss_dssp SSSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCSCSE----EECSTTEEEEEECC-CSSCCCCCEEEEE
T ss_pred CCCCCcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCCceE----EEECCCCEEEEcCc-CcccCCcceEEEE
Confidence 345789999665 7787789999999999999999999987654332 23333333221110 0123456788776
Q ss_pred ecC-----CCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 95 PDG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 95 ~~~-----~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
... ..+++|+|+|+|++|+.+|+.+|+.++...|+
T Consensus 77 ~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 77 PASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp ESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred CCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 521 25799999999999999999999999987665
No 23
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.65 E-value=4.2e-16 Score=140.88 Aligned_cols=102 Identities=19% Similarity=0.306 Sum_probs=75.4
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTV 92 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~--~~kk~~Fv 92 (761)
.+..+.++|||+ |+|...+.|++|||||+++.|+||+++.+..|. +.|.|..+..+... ..++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~---------~~i~L~~~~~~~~~~~~~~~~~F~ 72 (109)
T 1wgq_A 4 GSSGSTMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAAL---------ESQPLLGFTVTLVKDENSESKVFQ 72 (109)
T ss_dssp CCCSCSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSSCS---------EEEECSSEEEEECCCSSCSSSEEE
T ss_pred CCCCCeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCccC---------ceEECCCCEEEECCCCCCCCcEEE
Confidence 345678999666 777778999999999999999999998765532 23444433322221 23457888
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
|.. .++++|+|+|+|++|+.+|+.+|+.++...|+
T Consensus 73 i~~--~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~~~ 107 (109)
T 1wgq_A 73 LLH--KGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107 (109)
T ss_dssp EEE--TTEEEEEEECSSHHHHHHHHHHHHHHHSCCCC
T ss_pred EEe--CCCeEEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 764 34688999999999999999999999875543
No 24
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.65 E-value=4.9e-16 Score=141.51 Aligned_cols=101 Identities=25% Similarity=0.424 Sum_probs=76.1
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEe--CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee---------
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--------- 83 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~--~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~--------- 83 (761)
....++++|||+ |+|...+.|++|||||+ ++.|+||++..+..|.+ .|.|..+..+..
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g---------~i~L~~~~~v~~~~~~~~~~~ 72 (117)
T 1v5u_A 4 GSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKG---------VIDLAEVEAVAPGTPTIGAPK 72 (117)
T ss_dssp SCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCC---------EEEGGGEEEEECCCCCTTSCS
T ss_pred CcCCccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCccce---------EEEccCcEEEeecCccccccc
Confidence 456689999655 88877899999999999 88999999987765333 233333322211
Q ss_pred ccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 84 ~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
...++++|.|.. .+++|+|+|+|++++.+|+.+|+.++..+|+
T Consensus 73 ~~~~~~~F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 73 TVDEKAFFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp SSCTTTCEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred cCCCCeEEEEEC---CCceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 123447888755 4799999999999999999999999987665
No 25
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.64 E-value=5e-16 Score=143.73 Aligned_cols=99 Identities=28% Similarity=0.391 Sum_probs=75.5
Q ss_pred cEEEEEeeeeeecCCCCC-CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEec
Q 004320 18 TVFKSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k-~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~ 96 (761)
.|+++|||+++. ++..+ +||+|||||++++|+|||+..+..|+ ..++|.++.+.....- ...++++|.+...
T Consensus 11 ~VirkGWL~k~~-~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~~----G~IpL~~~~vr~v~~~--~~~rk~~F~l~~~ 83 (125)
T 1dyn_A 11 LVIRKGWLTINN-IGIMKGGSKEYWFVLTAENLSWYKDDEEKEKK----YMLSVDNLKLRDVEKG--FMSSKHIFALFNT 83 (125)
T ss_dssp CEEEEEEEEESC-CCGGGTSSEEEEEEEESSEEEEESSTTCSCEE----EEEECTTEEEEECCSC--SSSSCEEEEEEET
T ss_pred ceEEEEEEEEec-CccccCCceeeEEEEeccceeeecCCcccccc----eEEECCCceEeccCCC--CCCCceEEEEECC
Confidence 399999666322 44455 59999999999999999999877644 4678888888765431 1257788988753
Q ss_pred C-C----CCceEEEEecChHHHHHHHHHHHHH
Q 004320 97 G-R----DGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 97 ~-~----~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
. + +.++|.|.|+|.+|+++|+++|.+|
T Consensus 84 d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 84 EQRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp TSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 2 2 4569999999999999999999655
No 26
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.4e-15 Score=141.11 Aligned_cols=109 Identities=23% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEE-eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC-Ccceee--ccCCcc
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVV--REDKKL 89 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL-~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~-~~sv~~--~~~kk~ 89 (761)
+....++++|||+ |+|...+.|++||||| +++.|+||++..+..+.+...+.+.+..+.+.. +..+.. ...+++
T Consensus 3 ~~~~~v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~ 80 (130)
T 2d9v_A 3 SGSSGLVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDG 80 (130)
T ss_dssp TSCCCEEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTT
T ss_pred CCCCceeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCc
Confidence 3456799999666 7787889999999999 899999999987654222110000111111111 111111 124557
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
+|.|.. .++|+|+|+|+|++|+++||.||+.++..
T Consensus 81 ~F~I~~--~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 81 LLTVNL--REGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp EEEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 888765 24689999999999999999999999864
No 27
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.63 E-value=7.7e-16 Score=144.62 Aligned_cols=113 Identities=25% Similarity=0.423 Sum_probs=72.8
Q ss_pred CCCCCcEEEEEeeeeee---cCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCC--CceeeeeeCcEEcCCCcceee--c
Q 004320 13 PGASNTVFKSGPLFISS---KGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVVV--R 84 (761)
Q Consensus 13 ~~~~~~v~KeGyL~l~K---KG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~--~~~~~i~L~~I~L~~~~sv~~--~ 84 (761)
...+..+.|+|||++++ +|. ..++|++|||||+++.|+|||+........ +.....+.+.|+|..+..... .
T Consensus 6 s~~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~ 85 (129)
T 2p0d_A 6 SVGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHL 85 (129)
T ss_dssp ---CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTS
T ss_pred CCCCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCC
Confidence 34566899999887542 232 248999999999999999999985321100 000011334455554332211 2
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
..++++|.|.. .++++|+|+|++++|+++||.+|+.+|...
T Consensus 86 ~kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 86 SSRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp CSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34557887753 457899999999999999999999999754
No 28
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=138.94 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCCCcEEEEEeeeeeecCCCC-CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004320 14 GASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~-k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
.....++++|||+ |+|... +.|++|||||+++.|+||++..... .+++.+..+. +....+++++|.
T Consensus 5 ~~~~~~~~~G~L~--K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~----------~~~i~l~~~~-v~~~~~~~~~F~ 71 (114)
T 2da0_A 5 SSGYGSEKKGYLL--KKSDGIRKVWQRRKCSVKNGILTISHATSNRQ----------PAKLNLLTCQ-VKPNAEDKKSFD 71 (114)
T ss_dssp CCCCCSCEEEEEE--EECSSSCCCEEEEEEEEETTEEEECCSSCCSC----------CEEEETTTSE-EEECSSSSSCEE
T ss_pred CCCCCccEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEEcCCCCCC----------CCEEEeeeeE-EEECCCCCCEEE
Confidence 3455789999666 666544 8999999999999999999965432 2233443322 223345667888
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
|.. .+|+|+|+|+|++|+.+||.+|+.++..+-+
T Consensus 72 I~~---~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 105 (114)
T 2da0_A 72 LIS---HNRTYHFQAEDEQDYVAWISVLTNSKEEALT 105 (114)
T ss_dssp EEE---TTEEEEEECSSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEc---CCcEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 875 3899999999999999999999999976543
No 29
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.63 E-value=1.3e-15 Score=142.76 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCcEEEEEeeeeeecC-CCCCCcEEEEEEEe---CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccC
Q 004320 16 SNTVFKSGPLFISSKG-IGWKSWKKRWFILT---RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RED 86 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG-~~~k~WKKRWfVL~---~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-----~~~ 86 (761)
.....++|||+ |+| ...+.|+||||||+ +..|+||+++.+. +.. ..+++.|.|..+..|.. ...
T Consensus 12 ~~~~~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~-~~~----~~~~G~I~L~~~~~V~~~~~~~~~~ 84 (126)
T 1v5p_A 12 DRQNRICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQNL-AVG----AGAVGSLQLTYISKVSIATPKQKPK 84 (126)
T ss_dssp CCCCCEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTTS-CTT----CCCSEEEETTTCCEEEECCTTTSCS
T ss_pred cCCCceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCCC-CCC----ceeeEEEECCCccEEecCCcccCCC
Confidence 34446899555 776 56899999999999 5677888884221 010 01445566665444432 223
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
+++||+|.. ..|+|+|+|+|++|+++||.+|+.++...|+
T Consensus 85 ~~~~F~i~t---~~r~y~l~A~s~~e~~~Wi~al~~a~~~~~~ 124 (126)
T 1v5p_A 85 TPFCFVINA---LSQRYFLQANDQKDLKDWVEALNQASKSGPS 124 (126)
T ss_dssp CSSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHTTTTSSS
T ss_pred CCEEEEEEC---CCEEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 457887754 4699999999999999999999999865443
No 30
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.63 E-value=1.8e-15 Score=137.93 Aligned_cols=97 Identities=25% Similarity=0.357 Sum_probs=76.0
Q ss_pred CCCcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004320 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvi 93 (761)
....++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.... +++|.|
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~--~~~F~i 70 (115)
T 2cod_A 4 GSSGKVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRVQG--DNKFEV 70 (115)
T ss_dssp CCSCCCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEEET--TTEEEE
T ss_pred CCCCccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------cCCEEECCcceEEEeCC--CCEEEE
Confidence 445689999665 7776 678999999999999999999987754 34456666654443332 577877
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.. .+|+|+|+|++.+|+.+|+.+|+.++...
T Consensus 71 ~~---~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~ 101 (115)
T 2cod_A 71 VT---TQRTFVFRVEKEEERNDWISILLNALKSQ 101 (115)
T ss_dssp EE---SSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred Ee---CCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 64 37999999999999999999999999543
No 31
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=146.74 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCCcEEEEEeeeeeecC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------
Q 004320 14 GASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------- 83 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG---~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~------- 83 (761)
.-...++++|||+++.++ ...++||+|||||+++.|+||+++.+.... .+.|+|..+..+..
T Consensus 10 ~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~--------~G~I~L~~~~~v~~~~~~~~~ 81 (164)
T 2lul_A 10 HMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYR--------KGFIDVSKIKCVEIVKNDDGV 81 (164)
T ss_dssp CCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCC--------CCEEEGGGCCEEEECCCCSSS
T ss_pred cCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccccc--------ccEEEEeeeEEEEeccccccC
Confidence 345689999988854332 234689999999999999999987654321 22244433322211
Q ss_pred -ccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcchhhccCCCcccC
Q 004320 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRN 142 (761)
Q Consensus 84 -~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a~~~g~~~if~~ 142 (761)
....+++|.|.. ++|+|||+|+|++|+++||.+|+++|...++-. ..-|.|.|..
T Consensus 82 ~~~~~~~~f~i~t---~~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~~~-~~yHpg~~~~ 137 (164)
T 2lul_A 82 IPCQNKYPFQVVH---DANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIM-IKYHPKFWTD 137 (164)
T ss_dssp CCSSSCSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHTTCSCCC-SEECCSCCCT
T ss_pred cccccceeEEEec---CCcEEEEECCCHHHHHHHHHHHHHHHHHChhhh-hhcCCCcccC
Confidence 123446777654 379999999999999999999999998665532 2345666654
No 32
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=140.39 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCcEEEEEeeeeeecCC--CCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004320 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~--~~k~WKKRWfVL~~~--~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~ 90 (761)
.+..+.++|||+ |+|. ..+.|++|||||+++ .|+||++..+.. +.+.|+|..+..+.....++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~~~~~~~~~~~ 72 (119)
T 2dhk_A 4 GSSGKKLCGYLS--KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---------PLDSIDLSSAVFDCKADAEEGI 72 (119)
T ss_dssp SCSCCCCEEEEE--ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS---------CSEEEEGGGCEEEECTTGGGCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc---------cccEEECCCCEEEecCCCCCCE
Confidence 455678999665 7764 678999999999998 999999987754 3444666655544333345577
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
|.|.. .+|+|+|+|+|++|+++||.+|+.++..
T Consensus 73 F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 73 FEIKT---PSRVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp EEEEC---SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEe---CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 87765 2799999999999999999999999853
No 33
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.62 E-value=2e-16 Score=147.56 Aligned_cols=109 Identities=14% Similarity=0.244 Sum_probs=70.9
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCC----CCCCCC-ceeeeeeCcEEcCCCcceeeccCCcc
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS----ALPQRG-GEVNLTLGGIDLNNSGSVVVREDKKL 89 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~----s~p~~~-~~~~i~L~~I~L~~~~sv~~~~~kk~ 89 (761)
..+.+.|+|||+ |+|...+.|++|||||+++.|+||++... ..|.+. ..-.++|.++.+..... ....+++
T Consensus 8 ~~~~~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~--~~~~k~~ 83 (124)
T 2w2x_D 8 KKDEHKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQ--GKNQKSF 83 (124)
T ss_dssp -----CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTT--CBTTBSE
T ss_pred hhhhcceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccC--CcCCCCE
Confidence 345789999666 77777899999999999999999998532 222221 12233344443322111 1134667
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
+|.|.....+.++|+|+|+|.+|+.+||.||+.++..+
T Consensus 84 ~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 84 VFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp EEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 88886643345789999999999999999999998644
No 34
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=137.05 Aligned_cols=99 Identities=24% Similarity=0.424 Sum_probs=77.4
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLT 91 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---~~kk~~F 91 (761)
....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..++.+... ..++++|
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~~F 72 (115)
T 2dn6_A 4 GSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKD---------KKGDILLDENCCVESLPDKDGKKCLF 72 (115)
T ss_dssp CCCSCSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCSS---------EEEEECCCTTCEEEEECCCTTCCSEE
T ss_pred CCCCceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCcc---------cCcEEEecCcEEEEECCCCCCCeeEE
Confidence 456789999665 7887889999999999999999999876654 3455666655443322 3355788
Q ss_pred EEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 92 vit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.|.. .+++|+|+|+|++|+.+|+.+|+.++...
T Consensus 73 ~i~~---~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 73 LVKC---FDKTFEISASDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp EEEC---SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEe---CCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 8865 37999999999999999999999999743
No 35
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.62 E-value=2.7e-15 Score=138.38 Aligned_cols=102 Identities=26% Similarity=0.433 Sum_probs=75.6
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEe
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFP 95 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk~~Fvit~ 95 (761)
..++++|||+ |+|+..+.|++|||||+++.|+||+++.+..| .+.|.|..+..... ...++++|.|..
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 3 FNPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---------RGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp SSCSEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSSC---------SEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CCCceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCCc---------ceEEECCceEEEEccCCCCCceEEEec
Confidence 4578999665 77877899999999999999999998876542 23345554432211 234567887764
Q ss_pred cCC-------------------CCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 96 DGR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 96 ~~~-------------------~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
... ..|+|+|+|+|++|+++|+.+|+.++...|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 124 (127)
T 1fgy_A 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF 124 (127)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCTT
T ss_pred CCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCCc
Confidence 321 2479999999999999999999999986654
No 36
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.61 E-value=4.7e-15 Score=133.27 Aligned_cols=96 Identities=28% Similarity=0.473 Sum_probs=71.2
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------cC
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------ED 86 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~--~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~-------~~ 86 (761)
...++++|||+ |+|...+.|++|||||+++ .|+||++..+..| .+.|+|..+...... ..
T Consensus 4 ~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~ 72 (109)
T 2i5f_A 4 TGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---------LGAIHLRGCVVTSVESNSNGRKSE 72 (109)
T ss_dssp CCCEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSSC---------SEEEECTTCEEEEECC--------
T ss_pred cCceeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCc---------cEEEECCCCEEEEccCCcccccCC
Confidence 46789999666 7787889999999999986 9999998866543 233444443221111 12
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
++++|.|.. .++++|+|+|+|++|+.+|+.+|+.++
T Consensus 73 ~~~~F~i~~--~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 73 EENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CCSEEEEEC--TTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 567887765 346889999999999999999999886
No 37
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.61 E-value=6.1e-15 Score=137.06 Aligned_cols=101 Identities=27% Similarity=0.433 Sum_probs=74.7
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR------- 84 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~--~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~------- 84 (761)
.....++++|||+ |+|...+.|++|||||+++ .|+||++..+..| .+.|+|..+..+...
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~ 81 (129)
T 1x05_A 13 EFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---------LGAIHLRGCVVTSVESNSNGRK 81 (129)
T ss_dssp TTCSEEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSC---------SEEEECTTCEEEECCCCCCSSS
T ss_pred cccCCceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcc---------eeEEEccCCEEEEccCCccccc
Confidence 3467899999655 7887889999999999986 8999998766543 233444443221111
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
..++++|.|.. .++++|+|+|+|.+|+.+|+.+|+.++...
T Consensus 82 ~~~~~~F~i~~--~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 82 SEEENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp CSSCSEEEEEC--TTCCCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred cCCCeEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 12567888765 246889999999999999999999999743
No 38
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.61 E-value=6.1e-15 Score=136.53 Aligned_cols=98 Identities=23% Similarity=0.436 Sum_probs=72.5
Q ss_pred CCCcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcc
Q 004320 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL 89 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~----~~~kk~ 89 (761)
....++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...+++
T Consensus 17 ~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~~ 85 (128)
T 2dkp_A 17 PNAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG---------ILGSILLPSFQIALLTSEDHINRKY 85 (128)
T ss_dssp TTSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------EEEEECGGGSEEEECCGGGCCSSCS
T ss_pred CCCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCcc---------cceEEEcCceEEEEcCCcccCCCCe
Confidence 456789999666 6665 678999999999999999999887654 233344433221111 124567
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+|.|.. .++++|+|+|+|++|+++|+.+|+.++.
T Consensus 86 ~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 86 AFKAAH--PNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp EEEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred EEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 888764 3469999999999999999999999875
No 39
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.61 E-value=3.5e-15 Score=138.10 Aligned_cols=100 Identities=31% Similarity=0.410 Sum_probs=77.7
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceE
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLT 91 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~--~~kk~~F 91 (761)
.....++++|||+ |+|+..+.|++|||||+++.|+||++..+.. +.+.|+|..+..+... ..++++|
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~F 81 (126)
T 1fao_A 13 TAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNCF 81 (126)
T ss_dssp --CCTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCCC---------ceeEEEccceEEEEecccCCCCCEE
Confidence 4456789999665 7777789999999999999999999887654 3344666665543332 3455788
Q ss_pred EEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 92 vit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.|.. .+++|+|+|+|++++.+|+.+|+.+|...
T Consensus 82 ~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 82 CLVF---PFRTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEE---TTEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred EEEe---CCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 8865 37999999999999999999999999753
No 40
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=5.7e-15 Score=137.10 Aligned_cols=99 Identities=24% Similarity=0.410 Sum_probs=72.5
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEe--CCeEEEEcCC-CCCCCCCCceeeeeeCcEEcCCCcceeeccC----
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKND-PSALPQRGGEVNLTLGGIDLNNSGSVVVRED---- 86 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~--~~~L~yYKd~-~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~---- 86 (761)
.....++++|||+ |+|...+.|++|||||+ +..|+||+++ .+.. +.+.|+|..+........
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~---------~~g~i~L~~~~v~~~~~~~~p~ 81 (129)
T 1x1g_A 13 ELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR---------PVGGFSLRGSLVSALEDNGVPT 81 (129)
T ss_dssp TTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCSS---------CSCCEESTTCCCEECCSSSSCS
T ss_pred ccCCCEEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCc---------cceEEECcCCEEEEeCCCCCcc
Confidence 4567899999655 77877899999999999 4699999986 4433 233455544322111111
Q ss_pred ------CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 87 ------KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 87 ------kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+.++|.|.. .++++|+|+|+|++|+++|+.+|+.++.
T Consensus 82 ~~~~~~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 82 GVKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp SCSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred cccCCCCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 457787754 3468899999999999999999999985
No 41
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.60 E-value=4e-15 Score=136.27 Aligned_cols=95 Identities=20% Similarity=0.354 Sum_probs=69.6
Q ss_pred EEEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce----eeccCCcceEE
Q 004320 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV----VVREDKKLLTV 92 (761)
Q Consensus 20 ~KeGyL~l~KKG~---~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv----~~~~~kk~~Fv 92 (761)
.|+|||+.+ .|+ ..+.|++|||||+++.|+||++..+..|. +.|+|...... .....++++|.
T Consensus 1 tkeG~L~kK-~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~---------~~i~l~~~~~~~~~~~~~~~r~~~F~ 70 (112)
T 3cxb_B 1 TKEGMLHYK-AGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPL---------LSVNMGGEQCGGCRRANTTDRPHAFQ 70 (112)
T ss_dssp CEEEEEEEC-CSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCS---------EEEETTC-CEEEEEECCCSSCTTEEE
T ss_pred CceEEEEEe-CCCCCCCCCCceEEEEEEECCEEEEECCCCCCCcc---------ceEEecCCEEEeeeccCCCCCCeEEE
Confidence 489977633 232 57899999999999999999998765532 33455432211 12235668888
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
|.. .++++|+|+|+|+++|++||.+|+.++..
T Consensus 71 l~~--~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 71 VIL--SDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp EEE--TTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEc--CCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 864 24789999999999999999999999864
No 42
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.60 E-value=1.3e-15 Score=140.96 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=78.7
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeC-CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~-~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
...++++|||+ |+|...+.|++|||||++ +.|+||++..+..+.+ .+++..+.+..+........++++|.|.
T Consensus 5 ~~~~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g----~i~L~~~~~~~~~~~~~~~~~~~~F~I~ 78 (125)
T 1unq_A 5 DVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIR 78 (125)
T ss_dssp GGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHH----TSCSEEEECTTCEEEEECSSSTTEEEEE
T ss_pred CCCeeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCCCc----eeEccceeEEeeeecccccCCCCEEEEE
Confidence 46789999555 888888999999999996 6999999987644222 2355556555432222334566788876
Q ss_pred e-cCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 95 P-DGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 95 ~-~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
. ....+++|+|+|+|.+|+.+|+.+|+.++...+
T Consensus 79 ~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 79 CLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 3 223468999999999999999999999997543
No 43
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.60 E-value=3.3e-15 Score=137.62 Aligned_cols=99 Identities=24% Similarity=0.408 Sum_probs=76.1
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCcc
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-----~~~kk~ 89 (761)
....++++|||+ |+|...+.|++|||||+++.|+||++..+.. +.+.|.|..+..+.. ...+++
T Consensus 10 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~~~~~~~~~~ 78 (125)
T 1eaz_A 10 QDSAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMRDN 78 (125)
T ss_dssp --CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTCSS
T ss_pred CCCCccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc---------ceeEEEcccceEEeeccccccCCcCC
Confidence 356789999666 7787789999999999999999999987654 233455555443322 124567
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
+|.|.. .+++|+|+|+|++|+.+|+.+|+.++...
T Consensus 79 ~F~i~~---~~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 79 LFEIVT---TSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp EEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEe---CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 888875 37999999999999999999999999744
No 44
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.60 E-value=6e-17 Score=170.29 Aligned_cols=109 Identities=22% Similarity=0.300 Sum_probs=73.7
Q ss_pred CCCcEEEEEeeeee------ecCCC----CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-
Q 004320 15 ASNTVFKSGPLFIS------SKGIG----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV- 83 (761)
Q Consensus 15 ~~~~v~KeGyL~l~------KKG~~----~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~- 83 (761)
....++|+|||+++ |+|.. .++|++|||||+++.|+||++........ -..+.+.|+|..+.....
T Consensus 7 ~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~---~~~p~g~I~L~~~~v~~~~ 83 (263)
T 3a8p_A 7 EQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQ---NSAPRCALFAEDSIVQSVP 83 (263)
T ss_dssp ---CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------CCCSEEEECTTCEEEECT
T ss_pred cCCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccccccc---ccCccceEEcCCcEEEECC
Confidence 34679999988832 45554 78999999999999999999864211000 001233355543322111
Q ss_pred -ccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 84 -~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
...++++|.|.. .++++|+|+|+|++|+++||.+|+.++...|
T Consensus 84 ~~~kk~~~F~I~t--~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 84 EHPKKEHVFCLSN--SCGDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp TCSSCSSEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 123568888764 3589999999999999999999999997654
No 45
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=133.81 Aligned_cols=98 Identities=29% Similarity=0.448 Sum_probs=72.5
Q ss_pred CCCcEEEEEeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcc
Q 004320 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL 89 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG-~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~----~~~kk~ 89 (761)
+...++++|||+ |+| ...+.|++|||||+++.|+||+++.+..| .+.|.|..+..... ...+++
T Consensus 18 ~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~ 86 (122)
T 2yry_A 18 PNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI---------LGSIPLLSFRVAAVQPSDNISRKH 86 (122)
T ss_dssp TTCCEEEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCSC---------CEEEESTTCCCEECCTTCSCSSSS
T ss_pred CCCCccEEEEEE--EECCCCCCCcEEEEEEEeCCEEEEECCCCCCCc---------ccEEEcCCCEEEEcCccccCCccc
Confidence 345699999776 655 35789999999999999999999876553 23344444331111 124567
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+|.|.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 87 ~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 87 TFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EEEEec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 888753 3479999999999999999999999874
No 46
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.59 E-value=5.1e-15 Score=132.29 Aligned_cols=98 Identities=22% Similarity=0.415 Sum_probs=71.5
Q ss_pred cEEEEEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee-----eccCCcce
Q 004320 18 TVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-----VREDKKLL 90 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~--~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~-----~~~~kk~~ 90 (761)
.++++|||+++.++. ..+.|++|||||+++.|+||+++.+..|. +.|.|..+.... ....++++
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~---------g~i~L~~~~v~~~~~~~~~~~~~~~ 72 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPK---------GTFLIKGYSVRMAPHLRRDSKKESC 72 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCS---------EEEECTTCEEEECGGGCSSGGGGGE
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCC---------EEEEecceEEEeCCccccccCCcce
Confidence 589999777544332 23899999999999999999998765432 234444433221 12234578
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
|.|.. .++++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 73 F~i~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 73 FELTS--QDRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp EEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEc--CCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 88764 34599999999999999999999999863
No 47
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.58 E-value=3.5e-15 Score=146.82 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=69.5
Q ss_pred cEEEEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cC----C
Q 004320 18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---ED----K 87 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~---~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---~~----k 87 (761)
.|+|+|||+++.++. .+++||+|||||+++.|+||++..+... -.-+.+.|.|..+..+... .. +
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~-----~~~~~G~I~L~~~~~ve~~~~~~~~~~~~ 76 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGR-----RGSKKGSIDVEKITCVETVVPEKNPPPER 76 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTE-----EEEEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCC-----CCceeeEEECcceEEEEeccCCCCcchhc
Confidence 478999777433322 3578999999999999999998421100 0113444555543322111 11 1
Q ss_pred c---------------------ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 88 K---------------------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 88 k---------------------~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
+ ++|.|.. ..++|||+|+|++|+++||.+|+.++...|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~F~I~t---~~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 77 QIPRRGEESSEMEQISIIERFPYPFQVVY---DEGPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp CC---------CCTTHHHHCCCEEEEEEE---TTCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCcccccccccccccccccEEEEe---CCceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 1 5676654 2589999999999999999999999986554
No 48
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=7e-15 Score=135.25 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC---eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~---~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
+..+++.|||++ ++. .+.|+||||||+++ .|+||++..+..|.+ .++|.++.+..... ....+++++|.
T Consensus 5 ~~~~~~~G~L~k--~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g----~I~L~g~~V~~~~~-~~~~~~~~~Fk 76 (112)
T 2coc_A 5 SSGSLLCGPLRL--SES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPR----TIPLPSCKLSVPDP-EERLDSGHVWK 76 (112)
T ss_dssp CSSSSSEEEEEE--ESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCS----EECGGGCEEECCCS-SSCCSSSEEEE
T ss_pred cCCceEEEEEEe--cCC-CCCceEEEEEEECCCccEEEEECCCCccCcce----EEEcCCCEEEecCc-ccccCCCCEEE
Confidence 344567798875 333 68899999999985 799999998876443 45666666653211 11234678888
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
|.. .+++|+|+|+|++++++||.+|+.|+..
T Consensus 77 i~~---~~~~y~f~A~s~e~~~~Wl~al~~A~~~ 107 (112)
T 2coc_A 77 LQW---AKQSWYLSASSAELQQQWLETLSTAAHS 107 (112)
T ss_dssp EEE---TTEEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred Eec---CCeEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 874 3789999999999999999999998753
No 49
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=2.9e-15 Score=135.32 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=71.1
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
....+.++|||+ |+ ..+.|++|||||+++.|+||+++.+ . ..+...+.+.++.+... ....++++|.|.
T Consensus 4 ~~~~~~~~G~L~--K~--~~k~Wk~RwfvL~~~~L~yyk~~~~-~--~~~~~~i~l~~~~v~~~----~~~~~~~~F~i~ 72 (107)
T 2cof_A 4 GSSGLETSSYLN--VL--VNSQWKSRWCSVRDNHLHFYQDRNR-S--KVAQQPLSLVGCEVVPD----PSPDHLYSFRIL 72 (107)
T ss_dssp CCCCCTTCCEEE--EE--ETTEEEEEEEEECSSCEEEECSSTT-C--SEEEEEECTTTCEEECC----CBTTBSCEEEEE
T ss_pred CCCCCcEeEEEE--Ee--cCCCcceEEEEEECCEEEEEeCCcc-c--CCCeeEEeccceEEEEC----CCCCCCeEEEEE
Confidence 345678999777 44 5689999999999999999998765 1 12233334444333221 123456788876
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
. .++++|+|+|+|++|+.+||.+|+.++..
T Consensus 73 ~--~~~r~~~l~A~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 73 H--KGEELAKLEAKSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp E--TTEEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred e--CCCeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 5 23789999999999999999999998763
No 50
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=4.2e-15 Score=137.47 Aligned_cols=108 Identities=26% Similarity=0.430 Sum_probs=74.1
Q ss_pred CCCcEEEEEeeeeeec----C--CCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--CCceeeeeeCcEEcCCCcceee--c
Q 004320 15 ASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTLGGIDLNNSGSVVV--R 84 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KK----G--~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~--~~~~~~i~L~~I~L~~~~sv~~--~ 84 (761)
....+.++|||+++.. | ...+.|++|||||+++.|+||+++.+.... ..+... |++..+..... .
T Consensus 4 ~~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~-----i~l~~~~~~~~~~~ 78 (123)
T 1wjm_A 4 GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVP-----VSLARAQGSVAFDY 78 (123)
T ss_dssp CCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCC-----EECTTCEEEECTTC
T ss_pred CCCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCce-----EEccCcEEeecccc
Confidence 3456889997774321 1 127899999999999999999997654310 011222 33332211111 1
Q ss_pred cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCc
Q 004320 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (761)
Q Consensus 85 ~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~ 129 (761)
..++++|.|.. .++++|+|+|+|++|+++||.+|+.++...|+
T Consensus 79 ~~r~~~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 79 RKRKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp SSCSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCEEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 34667888764 35799999999999999999999999986654
No 51
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=137.47 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=74.2
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEe--CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~--~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvi 93 (761)
...+.++|||+ |+|...+.|++|||||+ ++.|+||+++.+.... +.+.|+|..+. +.....++++|.|
T Consensus 5 ~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~-------~~g~I~L~~~~-v~~~~~~~~~F~i 74 (120)
T 2d9x_A 5 SSGENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQK-------PRGTLQLAGAV-ISPSDEDSHTFTV 74 (120)
T ss_dssp CSCCCCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSC-------CSEEEECTTCC-EECCSSSSSCEEE
T ss_pred CCCCcEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCCC-------ccceEEcceEE-EEecCCCCCEEEE
Confidence 44578999666 77777889999999999 4799999987653111 23445665543 3333455678887
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.. .++++|+|+|+|++|+++||.+|+.++...
T Consensus 75 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 75 NA--ASGEQYKLRATDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp CC--SSSCCEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred Ec--CCCCEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 64 346999999999999999999999999743
No 52
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.57 E-value=8.1e-15 Score=136.43 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=71.2
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--------Ccce
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--------KKLL 90 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~--------kk~~ 90 (761)
++++|||+ |+|...++|++|||||+++.|+|||++..... ..+...++|.+|.+..... ... +.+.
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d-~~P~gsI~L~~c~v~~~~~---~~~~~~~~~~~~~~~ 79 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKD-LVPVMSLALSECTVTEHSR---KNSTSSPNSTGSDAK 79 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTC-CSCSEEEEGGGEEEEEECC---CCC---------CCE
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcC-CCceEEEECCCCEEEEccc---ccccccccccCCCcE
Confidence 79999665 77778899999999999999999998753211 1122344555555543211 111 5577
Q ss_pred EEEEecCCC----CceEEEEecChHHHHHHHHHHHHHH
Q 004320 91 TVLFPDGRD----GRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 91 Fvit~~~~~----grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
|+|...... +++|+|+|+|.+|+++|+.+|+.++
T Consensus 80 F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 80 FVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 888764321 4799999999999999999999885
No 53
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.57 E-value=6.7e-15 Score=131.41 Aligned_cols=96 Identities=20% Similarity=0.352 Sum_probs=69.2
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCC
Q 004320 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (761)
Q Consensus 21 KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~g 100 (761)
++|||+ |+|...+.|++|||||+++.|+||+++.+.... +.+.|+|..+ .+.....++++|.|.. .++
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~-------~~g~i~L~~~-~v~~~~~~~~~F~i~~--~~~ 68 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKG-------SKGSIKMAVC-EIKVHSADNTRMELII--PGE 68 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---CC-------CSCEEEGGGC-EEECCTTCSSEEEEEE--TTT
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccCC-------cccEEEeeee-EEEEcCCCCceEEEEe--CCC
Confidence 479555 888888999999999999999999998753211 2334555432 2222234456777754 347
Q ss_pred ceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 101 RAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 101 rty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
++|+|+|+|++|+++|+.+|+.++...+
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~~ 96 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASLT 96 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876443
No 54
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=135.73 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=71.4
Q ss_pred CCCcEEEEEeeeeeec---CC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCc---eeeeeeCcEEcCCCccee---e
Q 004320 15 ASNTVFKSGPLFISSK---GI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGG---EVNLTLGGIDLNNSGSVV---V 83 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KK---G~--~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~---~~~i~L~~I~L~~~~sv~---~ 83 (761)
.+..|.|+|||+.++- |. ..++|++|||||+++.|+|||+.....+.+.. .+..+.+.|+|..+.... .
T Consensus 4 ~~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d 83 (124)
T 3pp2_A 4 RTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKD 83 (124)
T ss_dssp -----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGG
T ss_pred cCCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccc
Confidence 4567999999986521 22 34689999999999999999998765422100 001133445555433221 1
Q ss_pred ccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 84 ~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
...++++|.+.. .++++|+|+|+++++|.+|+.+|+.+|+
T Consensus 84 ~~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 84 KSSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 234667787764 4689999999999999999999999985
No 55
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.57 E-value=1.3e-14 Score=138.49 Aligned_cols=99 Identities=21% Similarity=0.351 Sum_probs=72.5
Q ss_pred CCCcEEEEEeeeeeecCC----CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 004320 15 ASNTVFKSGPLFISSKGI----GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~----~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-----~~ 85 (761)
....++++|||+ |+|. ..+.|++|||||+++.|+||++..+..+ .+.|.|..+..+.. ..
T Consensus 13 ~~~~~~~~G~L~--K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~ 81 (148)
T 1u5f_A 13 DLPFVIKAGYLE--KRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ---------KGEFAIDGYDVRMNNTLRKDG 81 (148)
T ss_dssp GCSSEEEEEEEE--EECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSC---------SEEEECTTCEEEECTTSCSST
T ss_pred hCCCccEEEEEE--EeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCccc---------ceEEEcCCcEEEECCCcccCC
Confidence 446899999776 5543 3479999999999999999999876542 23344444332211 22
Q ss_pred CCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 86 ~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
.+.++|.|.. .++|+|+|+|+|.+++.+|+.+|+.++..
T Consensus 82 ~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 82 KKDCCFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp TGGGEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred CCccEEEEEC--CCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3447888765 34699999999999999999999999863
No 56
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=138.80 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=70.9
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCC---CCCCCCceeeeeeCcEEcCCCcc--eeec----cCC
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDLNNSGS--VVVR----EDK 87 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~---s~p~~~~~~~i~L~~I~L~~~~s--v~~~----~~k 87 (761)
..+.++|||+++..|+..+.|++|||||+++.|+||++..+ .. +.+.|+|..+.. +... ..+
T Consensus 3 ~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~---------p~g~I~L~~~~~~~v~~~~~~~~~~ 73 (134)
T 2y7b_A 3 SSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKN---------PIGRINLANCTSRQIEPANREFCAR 73 (134)
T ss_dssp CCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSC---------CSEEEEGGGBCSSSCEECCTTTCCC
T ss_pred CCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccC---------ceEEEEhhhCccccccccchhhccC
Confidence 46889997774433777889999999999999999995433 22 233455544332 2222 245
Q ss_pred cceEEEEec--CC---------------CCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 88 KLLTVLFPD--GR---------------DGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 88 k~~Fvit~~--~~---------------~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+++|.|... .. ..++|+|+|+|++|+.+||.+|+.++.
T Consensus 74 ~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 74 RNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp TTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 678877641 11 015899999999999999999999986
No 57
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.56 E-value=8.4e-15 Score=142.83 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=65.4
Q ss_pred cEEEEEeeeee--------ecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCc
Q 004320 18 TVFKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKK 88 (761)
Q Consensus 18 ~v~KeGyL~l~--------KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk 88 (761)
.++++|||+++ |+|...+.|++|||||+++.|+||++..+......+.+.+.+.++.+. +.. ...++
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~----~~~~~~~~~ 77 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLID----ISYSETKRK 77 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEE----ECSSSCSCS
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEE----eccccCCCC
Confidence 47899988865 566678999999999999999999998652211112222222111110 111 13456
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
++|.|... +++|+|+|++++|+.+||.+|+.++...+
T Consensus 78 ~~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~~~ 114 (168)
T 2j59_M 78 NVFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLNE 114 (168)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCCH
T ss_pred CEEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence 78888753 58999999999999999999999986443
No 58
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.56 E-value=9.3e-15 Score=139.61 Aligned_cols=100 Identities=26% Similarity=0.405 Sum_probs=75.3
Q ss_pred CCCcEEEEEeeeeeecC------CCCCCcEEEEEEEeCC-----eEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCccee
Q 004320 15 ASNTVFKSGPLFISSKG------IGWKSWKKRWFILTRT-----SLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVV 82 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG------~~~k~WKKRWfVL~~~-----~L~yYKd~~-~s~p~~~~~~~i~L~~I~L~~~~sv~ 82 (761)
....++++|||+ |+| ...+.|++|||||+++ .|+||++.. +.. +.+.|.|..+..+.
T Consensus 14 ~~~~~~~~G~L~--K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~---------~~g~I~L~~~~~~~ 82 (150)
T 1wg7_A 14 QKGGITKHGWLY--KGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE---------PKGSIFLDSCMGVV 82 (150)
T ss_dssp CSCCCCCEEEEE--ECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC---------CSEEECTTTCCEEC
T ss_pred CCCCeeEEEEEE--EecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCC---------cCcEEecccCEEEe
Confidence 346789999666 555 3467999999999997 999999987 433 33445665544433
Q ss_pred ec-cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 83 VR-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 83 ~~-~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.. ..++++|.|... ++++|+|+|++.+|+.+||.+|+.++...
T Consensus 83 ~~~~~~~~~F~i~~~--~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 83 QNNKVRRFAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp CCCSSCTTEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 22 346688888652 35899999999999999999999999744
No 59
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.55 E-value=7.9e-15 Score=132.94 Aligned_cols=103 Identities=24% Similarity=0.464 Sum_probs=72.0
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEE-eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccC--Ccce
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VRED--KKLL 90 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL-~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~---~~~~--kk~~ 90 (761)
..++++|||+ |+|...+.|++||||| .++.|+||+++.+..+.+ .+.+....|++.....+. .... ++++
T Consensus 3 ~~~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g--~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 3 MAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIED--KVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSCSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEE--EEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred cceeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCc--cccccccceeecccccccccCCCCCCCcCcE
Confidence 3578999555 7787889999999999 889999999987654322 222222224433222211 1222 2468
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
|.|.. .++++|+|+|+|++|+.+|+.+|+.|..
T Consensus 79 F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVC--RDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 88864 3479999999999999999999998864
No 60
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.55 E-value=2.4e-14 Score=131.64 Aligned_cols=101 Identities=25% Similarity=0.419 Sum_probs=72.6
Q ss_pred CCcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 16 SNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
...++++|||+ |+|+ ..+.|++|||||+++.|+||++..+..+.+ .+.+.++.+...... ....++++|.|.
T Consensus 8 ~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g----~i~l~~~~v~~~~~~-~~~~~~~~f~i~ 80 (123)
T 1upq_A 8 NLPVHIRGWLH--KQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLG----SVLLPSYNIRPDGPG-APRGRRFTFTAE 80 (123)
T ss_dssp TSCEEEEEEEE--EECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCE----EEEGGGCEEEECCSS-CTTSSSSEEEEE
T ss_pred CCCceEEEEEE--eeCCCCCCCceeEEEEEeCCEEEEECCCCCcccce----EEECCCCEEEECCCC-ccCCCcEEEEEE
Confidence 34589999666 6653 578999999999999999999987755332 233444333322110 112356777775
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
. .++++|+|+|+|.+|+.+|+.+|+.++.
T Consensus 81 ~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 81 H--PGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp C--TTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred C--CCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4 3459999999999999999999999986
No 61
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=131.37 Aligned_cols=101 Identities=24% Similarity=0.376 Sum_probs=71.9
Q ss_pred CCcEEEEEeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 16 SNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG-~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
...++++|||+ |+| ...+.|++|||||+++.|+||+++.+..+.+ .++|..+.+..... .....++++|.|.
T Consensus 8 ~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g----~i~L~~~~v~~~~~-~~~~~~~~~F~i~ 80 (117)
T 2d9y_A 8 NAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILG----SIPLLSFRVAAVQP-SDNISRKHTFKAE 80 (117)
T ss_dssp SCCCCEEEEEE--EECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCE----EEECSSCEEEECCT-TTTCCCSSEEEEE
T ss_pred CCCeeEEEEEE--EeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCC----EEEeCCeEEEEcCc-cccCCCccEEEEE
Confidence 35689999776 665 3578999999999999999999987655322 23333333211100 0112455788875
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 81 ~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 81 H--AGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp C--SSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred c--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 3 3469999999999999999999999885
No 62
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=133.76 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=67.8
Q ss_pred CcEEEEEeeeeeec-CC-CCCCcEEEEEEEeC-CeEEEEcCCCCC--CCCC------CceeeeeeCcEEcCCCcce----
Q 004320 17 NTVFKSGPLFISSK-GI-GWKSWKKRWFILTR-TSLVFFKNDPSA--LPQR------GGEVNLTLGGIDLNNSGSV---- 81 (761)
Q Consensus 17 ~~v~KeGyL~l~KK-G~-~~k~WKKRWfVL~~-~~L~yYKd~~~s--~p~~------~~~~~i~L~~I~L~~~~sv---- 81 (761)
+.++|+|||+ |+ |. ..++|++|||||++ +.|+||++..+. ...+ ...+..+.+.|.+..+...
T Consensus 2 ~~~~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~ 79 (128)
T 2rlo_A 2 AIPIKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSAS 79 (128)
T ss_dssp CCEEEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSC
T ss_pred CcceeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccc
Confidence 3578999666 66 42 57999999999997 688888752210 0001 0111222233333332211
Q ss_pred --ee-ccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 82 --VV-REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 82 --~~-~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
.. .+.++++|.|.. .++++|+|+|+|++|+++||.||+.+|..
T Consensus 80 ~~~~~~~~~~~~F~I~t--~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 80 GSAGQAEEENFEFLIVS--STGQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CCCSSCCCCCCCEEEEC--TTSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 00 124567887754 24699999999999999999999999863
No 63
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.53 E-value=1.1e-14 Score=134.84 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCCcEEEEEeeeeeec---CC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccC
Q 004320 15 ASNTVFKSGPLFISSK---GI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RED 86 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KK---G~---~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~--~~~ 86 (761)
-+..+.|+|||+.+.. ++ ..+.|++|||||+++.|+||+++.+..+.+...+ .+.+.|+|..+..... ...
T Consensus 4 ~~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~-~~~~~i~L~~~~v~~~~d~~k 82 (122)
T 1dro_A 4 TGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF-RGEPSYDLQNAAIEIASDYTK 82 (122)
T ss_dssp CCSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCS-SCCCBCCCSSCCCEECCSSSS
T ss_pred CCCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCccc-CCCceEECCCCEEEeCCCCCC
Confidence 4456889998875422 11 4789999999999999999999876543221110 0113345544322111 134
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
++++|.|.+ .++++|+|+|++++||.+||.+|+.+|..
T Consensus 83 r~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 83 KKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp STTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 567888763 35799999999999999999999999874
No 64
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.52 E-value=3.7e-14 Score=126.79 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=63.9
Q ss_pred EEEeeeeeec----C--CCCCCcEEEEEEEeCCeEEEEcCCCCCC--CCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004320 21 KSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 21 KeGyL~l~KK----G--~~~k~WKKRWfVL~~~~L~yYKd~~~s~--p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
++|||+++.. | ...+.|++|||||+++.|+||+++.+.. ....+...+.+.++.+.. ......++++|.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~---~~~~~~~~~~F~ 77 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEV---ALDYKKKKHVFK 77 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEE---CSSCCSSSSEEE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEE---cccccCCccEEE
Confidence 4897764430 1 4678999999999999999999876321 000112222332222111 011234567888
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHH
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
|.. .++++|+|+|+|++|+.+||.+|+.|
T Consensus 78 i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 78 LRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 764 35799999999999999999999864
No 65
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.51 E-value=6.3e-14 Score=142.63 Aligned_cols=99 Identities=22% Similarity=0.356 Sum_probs=73.7
Q ss_pred CcEEEEEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCcc
Q 004320 17 NTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~--~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-----~~~kk~ 89 (761)
..++|+|||+++.++. ..+.|++|||||+++.|+||++..+..| .+.|.|..+..+.. ...+++
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p---------~g~I~L~~~~~v~~~~~~~~~~k~~ 174 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ---------KGEFAIDGYDVRMNNTLRKDGKKDC 174 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSC---------SEEEECTTCEEEECGGGCSSTTGGG
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCccc---------eEEEEeCCcEEEEcCCccccCCCCC
Confidence 4699999777443321 4689999999999999999999877542 33355555444332 223457
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
+|.|.. .++|+|+|+|+|.+++.+||.+|+.+|..
T Consensus 175 ~F~I~t--~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 175 CFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 888865 34699999999999999999999999863
No 66
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=156.10 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=75.8
Q ss_pred CCCCcEEEEEeeeeeec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004320 14 GASNTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KK-G~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
...+.+.|+||||++.+ |+.++.|+||||||+++.|+||+...... .. .+.|..|.+.. ....++++||.
T Consensus 296 ~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~---~~--~~~l~~~~v~~----~~~~~r~~cF~ 366 (407)
T 4h8s_A 296 INRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAG---GL--IQDLDNCSVMA----VDCEDRRYCFQ 366 (407)
T ss_dssp CCCSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSC---CC--CBCSSCCEEEE----ECCTTCSSEEE
T ss_pred ccCCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCC---Ce--EEECCceEEEE----CCCCCCCceEE
Confidence 34567899999997644 66678999999999999999998654321 11 22333333322 12346789998
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
|.+. ...++|+|+|+|++|+.+||.+|+.++.++
T Consensus 367 i~~~-~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 367 ITTP-NGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp EECT-TSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEec-CCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 8652 224799999999999999999999999755
No 67
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.47 E-value=1.1e-13 Score=142.28 Aligned_cols=99 Identities=27% Similarity=0.538 Sum_probs=79.7
Q ss_pred CCcEEEEEeeeeeecCCCC-----CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGW-----KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~-----k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~ 90 (761)
...++++|||+ |+|... +.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.....++++
T Consensus 55 ~~~~~k~G~L~--K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~---------~~g~I~L~~~~~v~~~~~k~~~ 123 (228)
T 3tfm_A 55 KQEALKQGWLH--NNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---------LKGTVEVRSAKEIIDNTNKENG 123 (228)
T ss_dssp CCCSSEEEEEE--ECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCS---------EEEEEEGGGCSEEEEETTTTSE
T ss_pred CCCcceEEEEE--EECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcc---------eeEEEEcCCCEEeccCCCCCcE
Confidence 45688999666 665533 8999999999999999999987644 5566788777665555567788
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
|.|.. .+++|+|+|+|++|+++|+.+|+.++...|
T Consensus 124 F~I~t---~~r~~~l~A~s~~e~~~Wv~aL~~~i~~~~ 158 (228)
T 3tfm_A 124 IDIIM---ADRTFHLIAESPEDASQWFSVLSQVHSSTD 158 (228)
T ss_dssp EEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHTCCH
T ss_pred EEEEc---CCcEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 88865 479999999999999999999999997543
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.47 E-value=3.7e-13 Score=126.03 Aligned_cols=103 Identities=15% Similarity=0.274 Sum_probs=71.6
Q ss_pred EEEEeeeee---ecCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCC-----CCCceeeeeeCcEEcCCCcceeeccCCcc
Q 004320 20 FKSGPLFIS---SKGIG--WKSWKKRWFILTRTSLVFFKNDPSALP-----QRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (761)
Q Consensus 20 ~KeGyL~l~---KKG~~--~k~WKKRWfVL~~~~L~yYKd~~~s~p-----~~~~~~~i~L~~I~L~~~~sv~~~~~kk~ 89 (761)
.++|+|..+ |.|++ +++|++|||||.|+.|+||+....... ...+.-.++|.++.+... ....+++
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~----e~~~~~~ 77 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLP----DDPEHPD 77 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECC----CCTTSTT
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEec----CCCCCCC
Confidence 478977754 55653 689999999999999999996531100 001122344444444321 1234668
Q ss_pred eEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 90 ~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
+|.|.. ...|.+|+|+|++.+++..|+++|+.++...
T Consensus 78 ~F~L~~-~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 78 IFQLNN-PDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EEEEEC-TTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred EEEEee-CCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 898873 3358999999999999999999999999743
No 69
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.43 E-value=3.1e-13 Score=149.10 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=68.9
Q ss_pred CCcEEEEEeeeeeecCCC---CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceE
Q 004320 16 SNTVFKSGPLFISSKGIG---WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLT 91 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~---~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk~~F 91 (761)
.+.++|+|||| |+|.. ++.|+||||||+++.|+||++ .+.. +.+.|+|..|..... ..++++||
T Consensus 275 ~~~~~k~G~L~--K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~---------~~~~i~l~~~~v~~~~~~~r~~~F 342 (385)
T 2q13_A 275 RNLTRKAGYLN--ARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVA---------GGLAMDIDNCSVMAVDCEDRRYCF 342 (385)
T ss_dssp CCCSCCEEEEE--EC--------CCEEEEEEEETTEEEEECS-SCSS---------CEEEEECTTCEEEEECCTTCSSEE
T ss_pred CCCccEEEEEE--EecCCCCCcCCceeEEEEEECCEEEEecC-CCcC---------CCceEEccceEEEeccccCCCceE
Confidence 45789999887 44432 357999999999999999998 3322 122344444332212 24667899
Q ss_pred EEEecCCCC-ceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 92 VLFPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 92 vit~~~~~g-rty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.|.+. ++ ++|+|+|+|++|+++||.||+.++...
T Consensus 343 ~i~t~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~ 377 (385)
T 2q13_A 343 QITSF--DGKKSSILQAESKKDHEEWICTINNISKQI 377 (385)
T ss_dssp EEECT--TSCBCCCEECSSHHHHHHHHHHHHHHHTTC
T ss_pred EEEeC--CCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 88652 23 899999999999999999999998743
No 70
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.42 E-value=4.2e-13 Score=146.35 Aligned_cols=103 Identities=25% Similarity=0.420 Sum_probs=76.5
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee-eccCCcceEEEEec
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPD 96 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~-~~~~kk~~Fvit~~ 96 (761)
.+.++|||+ |+|+..+.|++|||||+++.|+||+++.+..|. +.|.|..+.... ....+++||.|...
T Consensus 212 ~~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p~---------G~I~L~~~~v~~~~~~~~~~~F~I~~~ 280 (347)
T 2r09_A 212 NPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPR---------GIIPLENLSIREVEDPRKPNCFELYNP 280 (347)
T ss_dssp CCCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSSCS---------EEEECTTCEEEEECCSSCSSEEEEECS
T ss_pred ccccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccCCc---------EEEEcCCeEEEEccCCCCCCEEEEEeC
Confidence 468999665 778778999999999999999999998765532 334444433211 12356678888642
Q ss_pred C-------------------CCCceEEEEecChHHHHHHHHHHHHHHhcCCcch
Q 004320 97 G-------------------RDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131 (761)
Q Consensus 97 ~-------------------~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a 131 (761)
. ..+|+|+|+|+|++|+.+|+.+|+.++...|...
T Consensus 281 ~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~~ 334 (347)
T 2r09_A 281 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYD 334 (347)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCHH
Confidence 1 1258999999999999999999999998766543
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.42 E-value=5.3e-13 Score=147.55 Aligned_cols=98 Identities=23% Similarity=0.391 Sum_probs=73.7
Q ss_pred CCCcEEEEEeeeeeecCCCC-CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce------eeccC-
Q 004320 15 ASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV------VVRED- 86 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~-k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv------~~~~~- 86 (761)
....++|+|||+ |+|... +.||+|||||+++.|+||+++.+..+ .+.|.|..+..+ .+...
T Consensus 265 l~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~~---------~G~I~L~~~~~~~~v~~~~~~~~~ 333 (386)
T 3lju_X 265 LSRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFA---------RGEVFIGSKESGYTVLHGFPPSTQ 333 (386)
T ss_dssp SSCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSBC---------SEEEECCCGGGTCEEEESCCTTCC
T ss_pred cccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCccc---------ceEEEeecceeeeeecccCCcccc
Confidence 345689999554 888776 99999999999999999999877653 334555443321 11111
Q ss_pred C---cceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 87 K---KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 87 k---k~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
+ +++|.|.. .+|+|+|+|+|++|+++||.||+.+|.+
T Consensus 334 ~~~~~~~F~I~t---~~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 334 GHHWPHGITIVT---PDRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCCSCEEEEEEC---SSCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcEEEEEe---CCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1 47777764 2699999999999999999999999975
No 72
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.37 E-value=1.1e-12 Score=138.34 Aligned_cols=105 Identities=16% Similarity=0.244 Sum_probs=72.7
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEEe
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLFP 95 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~s--v~~~~~kk~~Fvit~ 95 (761)
...++|||| |+|...++|++|||||+++.|+||++..+..+.+... ...+..+.+..... ......+++||.|.+
T Consensus 167 ~p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~-l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~ 243 (291)
T 3tca_A 167 VPELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLAC-FIQFENVNIYYGIQCKMKYKAPTDHCFVLKH 243 (291)
T ss_dssp CCCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCEE-EEEGGGCEEEEECSHHHHHCCSSSCEEEEEC
T ss_pred CCceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccCcee-eccceeEEEEecCccccccCCCCCeEEEEEc
Confidence 357899777 7777789999999999999999999988776554211 11222222211111 011234668898865
Q ss_pred cC---CCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 96 DG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 96 ~~---~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.. ...++|+|+|+|++++..||.||+.|..
T Consensus 244 ~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 244 PQIQKESQYIKYLCCDDARTLSQWVMGIRIAKY 276 (291)
T ss_dssp TTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 22 2347899999999999999999997753
No 73
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.37 E-value=6.6e-13 Score=139.60 Aligned_cols=96 Identities=25% Similarity=0.370 Sum_probs=69.7
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC-------eEEEEcCCCC-----CCCCCCceeeeeeCcEEcCCCcce
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPS-----ALPQRGGEVNLTLGGIDLNNSGSV 81 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~-------~L~yYKd~~~-----s~p~~~~~~~i~L~~I~L~~~~sv 81 (761)
.....++|+|||+ |+ +.||||||||+++ .|+||+++.+ .. +.+.|+|..+..+
T Consensus 5 ~~~~~v~k~G~L~--K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~---------p~g~I~L~~~~~V 69 (264)
T 1qqg_A 5 DGFSDVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSA---------PKRSIPLESCFNI 69 (264)
T ss_dssp ----CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSC---------CSEEEEGGGEEEE
T ss_pred CCCCCccEEEEEE--EC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccC---------cceEEEeeceEEE
Confidence 3456799999665 55 6899999999998 9999998765 22 3444666655444
Q ss_pred eec--cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 82 VVR--EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 82 ~~~--~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
... ..++++|.|... +|+|+|+|+|++|+++|+.+|+.++...
T Consensus 70 ~~~~~~~~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 70 NKRADSKNKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp EEECCSSCSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred EeccCCCCCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 322 345578877653 7999999999999999999999998644
No 74
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.29 E-value=3.4e-12 Score=118.16 Aligned_cols=99 Identities=15% Similarity=0.285 Sum_probs=67.2
Q ss_pred EEEeeeeeecCCCCC-CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--------ee--ccCCcc
Q 004320 21 KSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--------VV--REDKKL 89 (761)
Q Consensus 21 KeGyL~l~KKG~~~k-~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv--------~~--~~~kk~ 89 (761)
.+|||.+.|+|+..+ .|++|||||+++.|+||+++.+.. ... +.+.|+|+....| .. ..+..+
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~-----p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~ 76 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSN-----PYMVLDIDKLFHVRPVTQTDVYRADAKEIPR 76 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTC-----CSEEECGGGEEEEEECCTTTCSSSCTTTGGG
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCC-----ceEEEECcccEEEEEcccccccccccccCCc
Confidence 589776656877777 999999999999999999864320 001 1222343332221 11 122346
Q ss_pred eEEEEecC---CCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 90 LTVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 90 ~Fvit~~~---~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.|.|+... ...++|||.|+|++|+++||.+|+++|.
T Consensus 77 iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 77 IFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 67776532 3458999999999999999999998874
No 75
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.27 E-value=2.2e-11 Score=116.60 Aligned_cols=105 Identities=14% Similarity=0.289 Sum_probs=73.4
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC---------CCC----C-------C-----CCc---e------
Q 004320 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---------SAL----P-------Q-----RGG---E------ 65 (761)
Q Consensus 20 ~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~---------~s~----p-------~-----~~~---~------ 65 (761)
+|+|||| +++...+.|++|||||+++.|+|++... ... + . ... +
T Consensus 2 ~k~G~L~--~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILY--LEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEE--EEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEE--eecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 6999777 5666788999999999999999998221 111 0 0 000 0
Q ss_pred ------eeeeeCcEEcCCCcceeec---cCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 66 ------VNLTLGGIDLNNSGSVVVR---EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 66 ------~~i~L~~I~L~~~~sv~~~---~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
-++..|.|+|..|...... ..+.+.|.|.+...+.++|+|.|+|.++|.+||.+|+.|+..
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 0111355666665543332 246688888776555789999999999999999999999864
No 76
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.24 E-value=1.1e-11 Score=136.97 Aligned_cols=95 Identities=16% Similarity=0.293 Sum_probs=68.0
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEEEE
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLF 94 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL--~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~--~~~kk~~Fvit 94 (761)
.+|+|||| |+|+..+.|++||||| +++.|+||+++.+..|. +.|.|.....+.. ...+.++|.|+
T Consensus 146 ~~keG~L~--KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~---------g~I~L~~~~~~~~~~~~~~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLW--KRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPK---------AVMKIEHLNATFQPAKIGHPHGLQVT 214 (386)
T ss_dssp SEEEEEEE--EECSSSCCEEEEEEEEETTTTEEEEEC-----CCS---------EEEEGGGEEEEECHHHHTSTTCEEEE
T ss_pred ccccccee--eeccccCCceEEEEEEEcCCCEEEEECCCCccCcc---------cEEEeeccEEEEcccccCCCceEEEE
Confidence 58999776 8888899999999999 89999999998776643 3355544333221 12466777765
Q ss_pred -ecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 95 -~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
......|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 223346999999999999999999999874
No 77
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=6.6e-11 Score=111.34 Aligned_cols=98 Identities=18% Similarity=0.353 Sum_probs=67.3
Q ss_pred EEEEEeeeee-ecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEEE
Q 004320 19 VFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLF 94 (761)
Q Consensus 19 v~KeGyL~l~-KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---~~kk~~Fvit 94 (761)
...+|||-+. -++..+|.||+|||+|+++.|+|||+..+.. +. +++.|.|..|. |.+. ..+++.|.+.
T Consensus 9 pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~e-----Pig~I~L~gce-V~pd~~~~~~kf~ikl~ 80 (137)
T 2ys3_A 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GD-----PIQQLNLKGCE-VVPDVNVSGQKFCIKLL 80 (137)
T ss_dssp CCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SC-----CSCCBCTTTCE-EEECCBGGGTBEEEEEE
T ss_pred cchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CC-----CceEEECCCCE-EeccccccCCceEEEEE
Confidence 4567865433 2344588999999999999999999988752 11 33444444433 2222 3456665553
Q ss_pred -ecCCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 95 -~~~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
+...+.++|+|.|+|++++.+||+|++.|-
T Consensus 81 iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAs 111 (137)
T 2ys3_A 81 VPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111 (137)
T ss_dssp EECSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEECCCHHHHHHHHHHHHHhc
Confidence 322234899999999999999999999774
No 78
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.16 E-value=5e-11 Score=132.96 Aligned_cols=104 Identities=21% Similarity=0.340 Sum_probs=71.5
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE-
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF- 94 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~-~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit- 94 (761)
..|+|+|||+ |+|+.+++||+|||||+ ++.|+|||+.+...+.+ .+++..+.+..+........++++|.|.
T Consensus 4 ~~v~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 4 VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIRC 77 (446)
T ss_dssp CCEEEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEE
T ss_pred ceEEEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCccC----cccccCccccceeecCCCCCCCceeEEEc
Confidence 4699999555 88999999999999997 89999999988765433 2345555554443333334455677774
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
.........+|++++.+++++|+.||+.++..
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 32111223489999999999999999999863
No 79
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.15 E-value=2.5e-11 Score=128.10 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=69.2
Q ss_pred CCCcEEEEEeeeee-----ecC-----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--CCceeeeeeCcEEcCCCccee
Q 004320 15 ASNTVFKSGPLFIS-----SKG-----IGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTLGGIDLNNSGSVV 82 (761)
Q Consensus 15 ~~~~v~KeGyL~l~-----KKG-----~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~--~~~~~~i~L~~I~L~~~~sv~ 82 (761)
....|.|+|||..+ +++ ...+.|++|||||+++.|+||++....... ..+...+.+.++.+..+.
T Consensus 7 ~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~--- 83 (279)
T 3a8n_A 7 AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVP--- 83 (279)
T ss_dssp ---CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCT---
T ss_pred cCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEecc---
Confidence 34568999988643 221 136899999999999999999997643211 011122333333333211
Q ss_pred eccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 83 ~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
....++++|.|.. .++++|+|+|++.+||+.|+.+|+.++.
T Consensus 84 d~~kKk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 84 EHPKKDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp TSSSSCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1234567787764 3789999999999999999999999986
No 80
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=8.3e-10 Score=102.09 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=72.4
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED-- 86 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~------~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~-- 86 (761)
....++|+||||++-.+...+.|+||||||.+. .|-||.+......... +-+.|.|..|.+|.+...
T Consensus 8 m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~-----~rrVIrLsdCisV~~~~~e~ 82 (127)
T 2d9w_A 8 MGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEA-----ARKVIRLSDCLRVAEAGGEA 82 (127)
T ss_dssp SCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSC-----CEEEECGGGEEEEEECCSCS
T ss_pred ccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCC-----CceEEEhhhCCeEecccCcc
Confidence 456789999999988755556799999999885 8999988765432111 234466666666544322
Q ss_pred ----CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 87 ----KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 87 ----kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
..+.|.+.+ .+|+|+|.|++. |+.+||.+|..+.-
T Consensus 83 ~~pk~~~aF~l~T---~er~~~laAe~~-E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 83 SSPRDTSAFFLET---KERLYLLAAPAA-ERGDWVQAICLLAF 121 (127)
T ss_dssp SSCSSCEEEEEEE---SSCEEEEEECHH-HHHHHHHHHHHHHT
T ss_pred CCCCcceEEEEEe---CCcEEEEEeCcH-HHHHHHHHHHHHhc
Confidence 224555544 379999999965 99999999998863
No 81
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.06 E-value=6e-10 Score=116.27 Aligned_cols=106 Identities=24% Similarity=0.211 Sum_probs=71.7
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEE
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLF 94 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~s--v~~~~~kk~~Fvit 94 (761)
.....+|||| +++.+.++|+||||+|+++.|+||+......+ +.....+.+.++++-.... -..+.++++||.|.
T Consensus 130 ~~P~~~G~L~--~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~~-r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik 206 (256)
T 3hk0_A 130 SSPEIQGFLH--VKELGKKSWKKLYVCLRRSGLYCSTKGTSAAP-RHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIK 206 (256)
T ss_dssp SCEEEEEEEE--EECTTSSCEEEEEEEEETTEEEEESSTTCCCG-GGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEE
T ss_pred CCCcceeEEE--EecCCCCcceEEEEEEeCCEEEEEecCCCCcc-ccceEEEEcCCCEEEEecccccccCCCCCCEEEEE
Confidence 4567899887 55555689999999999999999987653321 1111223455555433221 01123456889887
Q ss_pred ecCC---CCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 95 PDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 95 ~~~~---~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+... ...+|||+|++++++.+|++||+.|..
T Consensus 207 ~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 207 PNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp ETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5321 124799999999999999999998875
No 82
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.99 E-value=1.1e-09 Score=115.53 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=66.9
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--eeccCCcceEEEEe
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VVREDKKLLTVLFP 95 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv--~~~~~kk~~Fvit~ 95 (761)
...++|||| +++.+.++|+||||+|+++.|+||+......+. .....+.+.++++-..... ..+.++.+||.|.+
T Consensus 157 ~pe~~G~L~--~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r-~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~ 233 (281)
T 4gmv_A 157 VPEIEGVLW--LKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSR-DLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKH 233 (281)
T ss_dssp CCCCEEEEE--EECTTSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEEC
T ss_pred CCccEEEEE--EECCCCCCCeEEEEEEeCCEEEEEeCCCCCccc-cceEEEEcCCcEEEEecccccccCCCCCcEEEEec
Confidence 446899887 555556899999999999999999875443221 1122234444444332110 11245678999875
Q ss_pred cC---CCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 96 DG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 96 ~~---~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.. ....+|+|+|+++.++..|+.||+-+..
T Consensus 234 ~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 234 PQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp TTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 22 1346899999999999999999998875
No 83
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.98 E-value=2e-09 Score=102.98 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvi 93 (761)
...+.|+|.|||+++ +|. .|++|||+|+++.+.||-++.... ..+.|.++..+.+....+ +.|+|.
T Consensus 47 ~~ge~Ilk~G~v~Kr-kGl---~~kkR~liLT~~PrL~Yvdp~~~~---------~KGeIpls~~l~ve~k~~-~~F~I~ 112 (151)
T 1w1g_A 47 VENNLILKMGPVDKR-KGL---FARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKNF-KTFFVH 112 (151)
T ss_dssp TTTCCEEEEEEEEEE-ETT---EEEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEESSS-SEEEEE
T ss_pred CCCCcEEEEEEEEec-ccC---cceeEEEEEcCCceEEEEcCcccc---------ccceEecCCCeeEEEcCC-CEEEEE
Confidence 467789999988743 342 399999999999889998876543 445588888776655553 345555
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
++ +|+|+|.+. ...+.+|+.||+.++..
T Consensus 113 Tp----~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 113 TP----NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ET----TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred CC----CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 65 699999997 88999999999999863
No 84
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.91 E-value=3.4e-09 Score=101.13 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=66.7
Q ss_pred EEEEeeeee-ecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004320 20 FKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (761)
Q Consensus 20 ~KeGyL~l~-KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~ 98 (761)
...|||-+. -|+...|.||+||||+++..|+|||++.+.. +.+...+.|+||.+.+... -...|+.+.+.....
T Consensus 27 eL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDVn---va~~Kf~ikL~ip~~ 101 (165)
T 4bbk_A 27 KLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDVN---VSGRKFGIKLLIPVA 101 (165)
T ss_dssp CEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEEE---TTTTEEEEEEEEEET
T ss_pred hhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEecccc---cccceeeEEEecCCC
Confidence 456877433 3456689999999999999999999988754 4444455666666554222 135566565543333
Q ss_pred CC-ceEEEEecChHHHHHHHHHHHHHH
Q 004320 99 DG-RAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 99 ~g-rty~LqAeSeeE~~eWI~AL~~aI 124 (761)
+| ..++|.|+|+.+..+||.|++-|-
T Consensus 102 ~gm~e~~LrcdsE~QYa~WMAAcrLAs 128 (165)
T 4bbk_A 102 DGMNEVYLRCDHEDQYARWMAACILAS 128 (165)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcceeeeeecCCHHHHHHHHHHhhhcc
Confidence 34 589999999999999999999774
No 85
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.90 E-value=3.9e-09 Score=101.78 Aligned_cols=101 Identities=17% Similarity=0.288 Sum_probs=71.2
Q ss_pred EEEEeeee-eecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE-ecC
Q 004320 20 FKSGPLFI-SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDG 97 (761)
Q Consensus 20 ~KeGyL~l-~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit-~~~ 97 (761)
...+||-+ +-|+...|.||+||||++++.|+|||++.+.. +.+...+.|+||.+.+...+ ...|+++.+. +..
T Consensus 48 eL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDVnv---a~~Kf~IkL~vP~~ 122 (173)
T 4f7h_A 48 ELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDVNI---SGQKFNIKLLIPVA 122 (173)
T ss_dssp CEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEET
T ss_pred hhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccccc---cccceeEEEeccCC
Confidence 45687743 33556689999999999999999999987753 34444556666666543221 3455544443 323
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 98 ~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+...|+|.|+|+..+.+||.|++-|-.
T Consensus 123 ~gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 123 EGMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 3447899999999999999999997753
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.60 E-value=2e-07 Score=86.17 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=75.0
Q ss_pred CCCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-------
Q 004320 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------- 85 (761)
Q Consensus 13 ~~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~------- 85 (761)
.++++.++|+| |+-..+...+.|||+|++|+..++.+|+++.... ..+.|.|..+..+....
T Consensus 2 ~~~~s~vlkeG--W~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~---------~ykeIpL~eIl~v~~~~~~~~l~~ 70 (125)
T 2coa_A 2 SSGSSGTLREG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPP 70 (125)
T ss_dssp CCCCCSCSEEE--EEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCT
T ss_pred CCCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeeeeehhHeecccccccccccCC
Confidence 35678999999 6668888889999999999999999999987655 33446666555543321
Q ss_pred -CCcceEEEEecCCCCceEEEEec---C--------hHHHHHHHHHHHHHHh
Q 004320 86 -DKKLLTVLFPDGRDGRAFTLKAE---T--------SEDLYEWKTALELALA 125 (761)
Q Consensus 86 -~kk~~Fvit~~~~~grty~LqAe---S--------eeE~~eWI~AL~~aI~ 125 (761)
...+||.|.+ ..++||++++ . .+.+..|..||+.|+-
T Consensus 71 ~~~~hcFEi~T---~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 71 GTNPHCFEIVT---ANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp TSCCEEEEEEC---SSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCCCceEEEEe---CCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 1338898865 3789999984 1 2569999999999985
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=7e-07 Score=82.75 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=72.0
Q ss_pred CCCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------c
Q 004320 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~--------~ 85 (761)
.+++.++|+| |+-..+..-+.|||+|++|+..+|.+|+++.... ....|.|..+..+... .
T Consensus 3 ~~~s~vlkeG--WmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------~ykeIpLseIL~v~~~~~~~~~~~~ 71 (129)
T 2d9z_A 3 SGSSGMVKEG--WMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------YYKEIPLSEILRISSPRDFTNISQG 71 (129)
T ss_dssp SCCTTSEEEE--EEEEEESSCCCCEEEEEEEESSCEEEESCSSCCS---------CCCEECTTTCCEECCTTCCCCSSSC
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeceeeHHHhcccccccCccccCCC
Confidence 4678999999 5556666677899999999999999999986654 2233444444333222 1
Q ss_pred CCcceEEEEecCCCCceEEEEecC---------------hHHHHHHHHHHHHHHh
Q 004320 86 DKKLLTVLFPDGRDGRAFTLKAET---------------SEDLYEWKTALELALA 125 (761)
Q Consensus 86 ~kk~~Fvit~~~~~grty~LqAeS---------------eeE~~eWI~AL~~aI~ 125 (761)
...+||.+.+ ...+||++++. .+.+..|..||+.|+-
T Consensus 72 ~~phcFEi~T---~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 72 SNPHCFEIIT---DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp SCCCSEEEEC---SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEE---CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 1238898865 37899998853 5899999999999985
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.57 E-value=0.00066 Score=63.17 Aligned_cols=105 Identities=20% Similarity=0.346 Sum_probs=68.7
Q ss_pred CCCcEEEEEee-eeee-----cCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCc-EEcCCCcce
Q 004320 15 ASNTVFKSGPL-FISS-----KGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGSV 81 (761)
Q Consensus 15 ~~~~v~KeGyL-~l~K-----KG~~~k~WKKRWfVL~~~------~L~yYKd~~~s~p~~~~~~~i~L~~-I~L~~~~sv 81 (761)
..-.+.|+|.| |... .......|.|+|++|+.. .|-||..++..+|+.+ +++.. ..+..++..
T Consensus 14 ~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~----i~cs~I~EVR~tt~L 89 (136)
T 1v5m_A 14 ELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS----IPLSAIIEVRTTMPL 89 (136)
T ss_dssp CSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC----EETTTCCBCCCCCCS
T ss_pred ccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccc----cchhhhhhhhhcccc
Confidence 34468999977 3332 123567899999998652 5678877776665442 12221 233333332
Q ss_pred eeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
.. .++-+.|++. ..++..|+|.|.++.+++.|++.|+..+..
T Consensus 90 Em-PD~~nTFVlK--~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 90 EM-PEKDNTFVLK--VENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SS-CCCTTEECCB--CTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cc-CCccceEEEE--ecCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 22 2355667765 345679999999999999999999988763
No 89
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.56 E-value=6.8e-05 Score=76.66 Aligned_cols=41 Identities=24% Similarity=0.605 Sum_probs=33.5
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCC
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSA 58 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s 58 (761)
...+.++|||+ |+|+..++|+||||||+++.|.||+.....
T Consensus 18 ~~~~~~~g~l~--~~~~~~~~w~~rw~vl~~~~~~~~~~~~~~ 58 (228)
T 3tfm_A 18 PGSPYFHSFLY--MNGGLMNSWKRRWCVLKDETFLWFRSKQEA 58 (228)
T ss_dssp ---CCEEEEEE--ECCTTTCCCEEEEEEEETTEEEEESSCCCS
T ss_pred CCCCceEEEEe--ecCcccccceEEEEEEeCCEEEEeccCCCc
Confidence 34678999666 889999999999999999999999976553
No 90
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.32 E-value=0.00079 Score=66.78 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=65.8
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~---~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvi 93 (761)
...+++|.|.++... +.|+.+|++|-.+.|.|..-..+...-. .....+.+..+.+... ..+++.+|.|
T Consensus 69 R~Ll~eG~L~~k~~~---~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~-----a~d~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKNAA---GRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREV-----AHEEKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEECTT---CCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECC-----SSCSSEEEEE
T ss_pred CceeeeceEEEeccC---CCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEecc-----CCCCCeEEEE
Confidence 579999987533221 2689999999999887764321110000 0011122333333221 1245677787
Q ss_pred EecCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 94 t~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
.......+.|.|+|.|..++..|+.+|+.|+...|
T Consensus 141 ~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~ 175 (185)
T 2lg1_A 141 SMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLN 175 (185)
T ss_dssp CCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence 65444457999999999999999999999998654
No 91
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.20 E-value=0.00085 Score=67.80 Aligned_cols=99 Identities=21% Similarity=0.371 Sum_probs=60.4
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCC-------eEEEEcCCCCCCCCCCceeeeeeCcEE-cCCCcceeeccCCc
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGID-LNNSGSVVVREDKK 88 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~-------~L~yYKd~~~s~p~~~~~~~i~L~~I~-L~~~~sv~~~~~kk 88 (761)
..++.+| +.+-+. .|.||+|||||+.- .|..|||.++....+....++.|..|. +.... .-+.+.
T Consensus 7 ~~~v~eg--~vk~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~---~ldk~s 79 (224)
T 3ml4_A 7 EAALVEG--QVKLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPAL---PYEGLA 79 (224)
T ss_dssp CCCSEEE--EEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEE---EETTEE
T ss_pred cceeEEE--eeeeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccc---cccCcc
Confidence 4567889 544333 25799999999872 688999987643222223344443321 11111 112223
Q ss_pred ceE-EEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 89 LLT-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 89 ~~F-vit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
+.. +|+. ..++.|.+++.+.+.+|-..|+..+..
T Consensus 80 ~TlAIIc~----d~~~vLAFds~e~l~~W~~~l~~slGe 114 (224)
T 3ml4_A 80 HTLAIICL----SQAVMLGFDSHEAMCAWDTRIRYALGE 114 (224)
T ss_dssp EEEEEEES----SCEEEEECSSHHHHHHHHHHHHHHTSS
T ss_pred cEEEEEec----CcEEEEEeCCHHHHHHHHHHHhhccCC
Confidence 333 3333 467899999999999999999987653
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.07 E-value=0.0048 Score=57.94 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=63.0
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecChHHHHHH
Q 004320 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (761)
Q Consensus 37 WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eW 116 (761)
-+-|||+|-.+.|.|.+-..... ...-.-.+++.++.+..... ....+++|.|+. ....++.+.|.|.+|+++|
T Consensus 44 ~~eR~l~LF~~~Ll~~s~~~~~~-~f~~kgklPL~g~~V~~~ed---~~~~~~aFeI~g--~~~~~i~v~~~s~eE~~~W 117 (132)
T 1v61_A 44 KEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLDE---IEGSDCMFEITG--STVERIVVHCNNNQDFQEW 117 (132)
T ss_dssp CCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTCS---SSSSCCCEEEEC--SSSCEEEECCCCSHHHHHH
T ss_pred ceEEEEEEcCCeEEEEEecCCCc-eEEEEEEEecceeEEEeccc---cccCccEEEEec--CCCceEEEEeCCHHHHHHH
Confidence 36799999999999888653211 11122356777777776322 134568899874 3457899999999999999
Q ss_pred HHHHHHHHhcCCc
Q 004320 117 KTALELALAQAPS 129 (761)
Q Consensus 117 I~AL~~aI~~aP~ 129 (761)
+.+|+.++..||.
T Consensus 118 l~~L~~~i~~~~~ 130 (132)
T 1v61_A 118 MEQLNRLTKSGPS 130 (132)
T ss_dssp HHHHHHHHTTSCS
T ss_pred HHHHHHHHhhccc
Confidence 9999999987763
No 93
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=96.80 E-value=0.0066 Score=65.89 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=68.1
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC--------------ceeeeeeCcEEcCCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~--------------~~~~i~L~~I~L~~~~sv 81 (761)
....+++|.|.. +.. .+.|+.|||.|-.+.|.|.+.......-.. ....+++..+.+..
T Consensus 256 ~r~li~eG~l~~--~~~-~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e---- 328 (377)
T 3p6a_A 256 KKKLVHEGPLTW--RVT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 328 (377)
T ss_dssp TSCEEEEEEEEE--ESS-SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEE----
T ss_pred cceEEEECCcEE--Eec-CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccc----
Confidence 357999997742 222 236899999999999999885432110000 01123344443332
Q ss_pred eeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
...+.+.+|++.........|.|+|.|.+|.+.|+..|+.++...
T Consensus 329 -~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 329 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CTTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred -cccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 223455677776544456789999999999999999999999754
No 94
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=96.78 E-value=0.005 Score=70.59 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=67.5
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC--------------ceeeeeeCcEEcCCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~--------------~~~~i~L~~I~L~~~~sv 81 (761)
....+++|.|. .++. ...|+.|||.|-.+.|.|.+.......-.. ....+++..+.+...
T Consensus 409 ~R~LI~eG~l~--~~~~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~--- 482 (536)
T 3odw_A 409 KKKLVHEGPLT--WRVT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREV--- 482 (536)
T ss_dssp TSCEEEEEEEE--EESC-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEEC---
T ss_pred cceeeeecceE--EEec-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecc---
Confidence 46799999764 3322 235899999999999999885432110000 011234444444332
Q ss_pred eeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCCcch
Q 004320 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP~~a 131 (761)
..+.+.+|++.........|.|+|.|.+|.+.|+..|+.+|..+..++
T Consensus 483 --~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~~ 530 (536)
T 3odw_A 483 --ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPA 530 (536)
T ss_dssp --TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC-
T ss_pred --cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 234556777765444568999999999999999999999998765443
No 95
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.72 E-value=0.008 Score=66.29 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--------C------CceeeeeeCcEEcCCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--------R------GGEVNLTLGGIDLNNSGSV 81 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~--------~------~~~~~i~L~~I~L~~~~sv 81 (761)
....+++|.|. +++. ...|+.|||.|-.+.|.|.+.......- + .-...+++..+.+...
T Consensus 292 ~r~li~eG~l~--~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~--- 365 (418)
T 3t06_A 292 TRKMIHEGPLT--WRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--- 365 (418)
T ss_dssp GSCEEEEEEEE--ECCB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC---
T ss_pred cceeEEeceEE--EEeC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceeccc---
Confidence 36689999765 3322 2358899999999999998854321100 0 0012344444554421
Q ss_pred eeccCCcceEEEEecCCC-CceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 82 VVREDKKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~-grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
..+.+.||++.....+ .+.|.|+|.|.++...|+.+|++++..++
T Consensus 366 --~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~ 411 (418)
T 3t06_A 366 --ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAH 411 (418)
T ss_dssp --SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC-
T ss_pred --cccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence 2344455555432222 26999999999999999999999998554
No 96
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.39 E-value=0.021 Score=61.70 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=63.5
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCC--------CCCCc------eeeeeeCcEEcCCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--------PQRGG------EVNLTLGGIDLNNSGSV 81 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~--------p~~~~------~~~i~L~~I~L~~~~sv 81 (761)
....+++|.|. .++. .+.|+.|||.|-.+.|.|.+...... ..+.. ...+++..+.+...
T Consensus 250 ~R~li~~G~l~--~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~--- 323 (368)
T 1xcg_A 250 TRKMIHEGPLT--WRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--- 323 (368)
T ss_dssp GSCEEEEEEEE--ECCS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC---
T ss_pred cceEEeecceE--eeec-CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecc---
Confidence 45789999664 3322 34689999999999999987643210 00000 11233333333221
Q ss_pred eeccCCcceEEEEecCCC-CceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 82 VVREDKKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~-grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
..+++.++++.....+ .+.|.|+|.|.++...|+.+|+.++..
T Consensus 324 --~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 324 --ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp --SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --cCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1234444555432211 378999999999999999999999874
No 97
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.38 E-value=0.033 Score=50.70 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=60.0
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCcee--eeeeCcEEcCCCcceeeccCCcceEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV--NLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~--~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
++..++++|.|..--.. ..+.=++++|.|-.+.|.|-+-..... +.-.+ .+++..+.+.... ....-+.+|.
T Consensus 4 pgR~lv~eG~l~el~~~-~~k~~~~v~~FLfND~Ll~a~~~~~~~--~~~~~~~~~~L~~~~v~d~~---d~~~~~n~f~ 77 (113)
T 1zc3_B 4 PGQYLVYNGDLVEYEAD-HMAQLQRVHGFLMNDCLLVATWLPQRR--GMYRYNALYPLDRLAVVNVK---DNPPMKDMFK 77 (113)
T ss_dssp -CCCEEEEEEEEEEETT-TCCEEEEEEEEEESSEEEEEEEECCTT--SCEEEEEEEETTTCEEEEEC---CBTTBSSEEE
T ss_pred CCeEEEEeCcEEEEccc-cCCCCccEEEEecCCEEEEEEEeccCc--ccEEEEEEEEcccCEEEECC---CCcccceEEE
Confidence 45568999966422111 112235678888888888887643311 11111 1233333332211 1123345666
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
|.. ..+.|.|+|++.+|..+|+.+|++++.
T Consensus 78 i~~---~~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 78 LLM---FPESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp EEE---TTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEe---CCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 654 257899999999999999999999985
No 98
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.015 Score=64.37 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=61.3
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit 94 (761)
.+...+++|.|..... +.|+.|||.|-.+.|.|.+-..... ..-...+++..+.+... .....++.|.+.
T Consensus 240 ~~r~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~--y~~k~~i~L~~l~v~~~----~~~~~~~~f~i~ 309 (434)
T 3mpx_A 240 PGREFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGK--YRLKNTLAVANMKVSRP----VMEKVPYALKIE 309 (434)
T ss_dssp TTCCEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSC--EEEEEEEEC-----CCC----CCTTSCSEEEEE
T ss_pred CCcceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCe--EEEEEEEEcCCcEEEec----CCCCCCeeEEEe
Confidence 3456899997753322 3489999999999999998543211 11111234444444321 112345677765
Q ss_pred ecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 95 ~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
. .++.|+|+|.|.+++..|+.+|+.+|..
T Consensus 310 ~---~~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 310 T---SESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp C---SSCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred c---CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3 3578999999999999999999999964
No 99
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=96.20 E-value=0.014 Score=63.74 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=65.7
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCC------------CCCCc--eeeeeeCcEEcCCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL------------PQRGG--EVNLTLGGIDLNNSGSV 81 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~------------p~~~~--~~~i~L~~I~L~~~~sv 81 (761)
....+++|.|.. +.. ...++.|||.|-.+.|.|.+-..+.. +.++. ...+++..+.+..
T Consensus 254 ~R~li~eG~l~~--~~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~---- 326 (385)
T 1txd_A 254 KRKMIHEGPLVW--KVN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQ---- 326 (385)
T ss_dssp GSCEEEEEEEEE--ESS-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceEEEECcEEE--EcC-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccc----
Confidence 357899997643 221 24588999999999999887543210 00000 0112333333222
Q ss_pred eeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcCC
Q 004320 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~aP 128 (761)
...+.+.+|.++....+.+.|.|+|.|.++...|+.+|+.++....
T Consensus 327 -~~~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~ 372 (385)
T 1txd_A 327 -VATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK 372 (385)
T ss_dssp -CCC-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -cccCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 1123456777776444467999999999999999999999997553
No 100
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=96.14 E-value=0.04 Score=58.24 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=63.9
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCcee----eeeeCcEEcCCCcceeeccCCcceEEE
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV----NLTLGGIDLNNSGSVVVREDKKLLTVL 93 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~----~i~L~~I~L~~~~sv~~~~~kk~~Fvi 93 (761)
..+..|.+.....+...+.++.|+|.|-.+.|.|.+-..... +...+ .+++..+.+... .......|.+
T Consensus 202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y~~k~~i~l~~~~v~e~-----~~~~~~~F~i 274 (311)
T 1nty_A 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKYLYKSKLFTSELGVTEH-----VEGDPCKFAL 274 (311)
T ss_dssp CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEEEEEEEEEGGGEEEECC-----CTTCTTEEEE
T ss_pred CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCceeEEeeeeeccceeeEEc-----cCCCCceEEE
Confidence 466777554332222245679999999999999987643211 11111 123333333321 1223456777
Q ss_pred EecC--CCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 94 FPDG--RDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 94 t~~~--~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.... ..+..|.|+|.|.++...|+.+|+.+|..+
T Consensus 275 ~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 275 WVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp EESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 6521 235689999999999999999999999753
No 101
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=96.12 E-value=0.045 Score=50.87 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=31.6
Q ss_pred CcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 87 kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
...||.|...+. -++..|.|+|.++++.|+..|+.++...
T Consensus 84 ~~~~FsIiy~~~-~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 84 EDRCFSIVFKDQ-RNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGGEEEEEESSS-CCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred ccceEEEEECCC-CceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 346888876432 4799999999999999999999998644
No 102
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=96.00 E-value=0.048 Score=58.64 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=65.0
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC---CCceeeeeeCcEEcCCCcceeec--cCCcce
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---RGGEVNLTLGGIDLNNSGSVVVR--EDKKLL 90 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~---~~~~~~i~L~~I~L~~~~sv~~~--~~kk~~ 90 (761)
....+++|.|. +.| .++.|||.|-.+.|.|.|........ .+..+. ..+.|.+......... ..-++.
T Consensus 244 ~r~li~eG~l~--~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~-~k~~i~l~~~~v~~~~d~~~~~~~ 316 (354)
T 1dbh_A 244 CNEFIMEGTLT--RVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYR-LKEKFFMRKVQINDKDDTNEYKHA 316 (354)
T ss_dssp CCCEEEEEEEE--ETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEE-EEEEEESCSCEEEECCCSSSCCSE
T ss_pred cceEEEEeeEE--EEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCccee-EEEEEeccceEEEeCCcccccCcc
Confidence 46789999554 444 57889999999999998875321111 111221 1233444443221111 123466
Q ss_pred EEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 91 Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
|.+... ++..|.|+|.|.++...|+.+|+.+..+
T Consensus 317 F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 317 FEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp EEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred EEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 777542 2578999999999999999999999764
No 103
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=95.94 E-value=0.089 Score=49.71 Aligned_cols=105 Identities=13% Similarity=-0.011 Sum_probs=65.4
Q ss_pred CcEEEEEeeeeee--cCCCCCCcEEEEEEEeCCeEEEEcCCCCCC--CCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004320 17 NTVFKSGPLFISS--KGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (761)
Q Consensus 17 ~~v~KeGyL~l~K--KG~~~k~WKKRWfVL~~~~L~yYKd~~~s~--p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fv 92 (761)
...++.+-||--- -...+++-+.|+|-|-.+.|.|-|--+... ....-...+++.|+.+..... ..-.++|.
T Consensus 11 Rrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~----e~~p~~~~ 86 (140)
T 3qwm_A 11 RRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN----QYYPNGIR 86 (140)
T ss_dssp CCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC----SSCTTEEE
T ss_pred ceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC----CCCceEEE
Confidence 3477888776221 111234458899999999999987332211 111222345666666654322 23446666
Q ss_pred EEecCCC---CceEEEEecChHHHHHHHHHHHHHHh
Q 004320 93 LFPDGRD---GRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 93 it~~~~~---grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
+.....+ .+++.|+|.|..|+.+|+.+|+.+|.
T Consensus 87 l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 87 LTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp EEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6543222 27899999999999999999999996
No 104
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.79 E-value=0.08 Score=58.18 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=66.3
Q ss_pred CCCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceE
Q 004320 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLT 91 (761)
Q Consensus 15 ~~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~---~~kk~~F 91 (761)
.....+++|.|. +.......++.|||.|-.+.|.|.+..........-...+++..+.+......... ..-+++|
T Consensus 253 ~~r~Li~~G~l~--~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 330 (402)
T 2dfk_A 253 RSSELIYTGEMA--WIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF 330 (402)
T ss_dssp TCCCEEEEEEEE--EESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred cccceEEeceEE--EEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeE
Confidence 455789999665 33222235899999999999999986432111111111234444444321110000 0113467
Q ss_pred EEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 92 vit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
.+... ..+..|.|+|.|.++...|+.+|+.++...
T Consensus 331 ~i~~~-~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~ 365 (402)
T 2dfk_A 331 KLHNK-ETEEVHLFFAKKLEEKIRWLRAFREERKMV 365 (402)
T ss_dssp EEEES-SSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 66542 235789999999999999999999998753
No 105
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.71 E-value=0.05 Score=64.80 Aligned_cols=99 Identities=29% Similarity=0.452 Sum_probs=64.3
Q ss_pred EEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-cC
Q 004320 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (761)
Q Consensus 19 v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~-~~ 97 (761)
|+..|||-+...+.....=|.+||||+..+|.|||++.... ..+.+++.+..+.....-. -.+++.|.+.- ..
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 613 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKGF--MSSKHIFALFNTEQ 613 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETTS
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhhcc--ccccccccccCCcc
Confidence 99999766555454445568899999999999999976543 3456677777665433210 12445565543 22
Q ss_pred C----CCceEEEEecChHHHHHHHHHHHHH
Q 004320 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (761)
Q Consensus 98 ~----~grty~LqAeSeeE~~eWI~AL~~a 123 (761)
+ +-+..-|.|+|.++.+.|...+-+|
T Consensus 614 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 614 RNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp SCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhccccccchhhHHhhhhc
Confidence 2 2257889999999999999887544
No 106
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.66 E-value=0.072 Score=59.56 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEE
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTV 92 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~---~~~~kk~~Fv 92 (761)
....+++|.|. +.......++.|||.|-.+.|.|.|..........-...+++..+.+....... ....-+++|.
T Consensus 331 ~r~li~~G~l~--~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~ 408 (466)
T 2pz1_A 331 SSELIYSGELT--RVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFR 408 (466)
T ss_dssp CSCEEEEEEEE--EECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEE
T ss_pred cceeEEeeeEE--EEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEE
Confidence 45689999665 332223458899999999999999864321111000112233333322111000 0001235677
Q ss_pred EEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 93 it~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
+... ..+..|.|+|.|.++...|+.+|+.++...
T Consensus 409 i~~~-~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~ 442 (466)
T 2pz1_A 409 LHRG-ATGDSHLLCTRKPEQKQRWLKAFAREREQV 442 (466)
T ss_dssp EECS-SSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 6542 235789999999999999999999998743
No 107
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.65 E-value=0.067 Score=57.76 Aligned_cols=104 Identities=12% Similarity=0.188 Sum_probs=63.4
Q ss_pred CcEEEEEeeeeeec--CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC--cee----eeeeCcEEcCCCcceeeccCC
Q 004320 17 NTVFKSGPLFISSK--GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRG--GEV----NLTLGGIDLNNSGSVVVREDK 87 (761)
Q Consensus 17 ~~v~KeGyL~l~KK--G~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~--~~~----~i~L~~I~L~~~~sv~~~~~k 87 (761)
...++.|.+++... |+ ..+.++.|||.|-.+.|.|.+-..... .++ ..+ .+++..+.+... ....
T Consensus 205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~-~~~~~~~y~~k~~i~l~~~~v~~~-----~~~~ 278 (354)
T 2rgn_B 205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGV-RGGTQPGYVYKNSIKVSCLGLEGN-----LQGD 278 (354)
T ss_dssp CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC---------CCEEEEEEEEGGGEEEEES-----GGGC
T ss_pred ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCC-CCCCCCceEEcceeeccceeeeec-----cCCC
Confidence 45888897765432 11 234689999999999999988654311 011 011 223333333211 1123
Q ss_pred cceEEEEecCCC--CceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 88 KLLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 88 k~~Fvit~~~~~--grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
++.|.+...++. ...|.|+|.|.++...|+.+|+.++..
T Consensus 279 ~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 279 PCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp TTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 456766653332 378999999999999999999999963
No 108
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=95.57 E-value=0.1 Score=57.16 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=63.8
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEe
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFP 95 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk~~Fvit~ 95 (761)
...+++|.|.+. ....+.++.||+.|-.+.|.|.+...... .-...+++..+.+........ ...-++.|.+..
T Consensus 232 grli~~G~l~~~--~~~~~~~~~~~~fLF~d~Ll~~k~k~~~y---~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~ 306 (406)
T 2vrw_B 232 GRPKIDGELKIT--SVERRSKTDRYAFLLDKALLICKRRGDSY---DLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIE 306 (406)
T ss_dssp CSEEEEEEEEEE--CSSCCSCEEEEEEEESSEEEEEEEETTEE---EEEEEEETTTEEEEC--------CTTCEEEEEEE
T ss_pred CcccccccEEEE--ecCCCccceEEEEecCCEEEEEEecCCce---EEEEEecccceeeeecCCCCccCCccceeeEEEe
Confidence 347899966533 22235689999999999999987642110 011123444444433211000 001235666654
Q ss_pred cCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 96 ~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
. .+.+.|.|+|.|.++...|+.+|+.++...
T Consensus 307 ~-~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 307 D-QGAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp T-TCSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 2 235789999999999999999999999753
No 109
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.46 E-value=0.11 Score=56.00 Aligned_cols=105 Identities=13% Similarity=0.230 Sum_probs=65.4
Q ss_pred CcEEEEEeeeee---ecCCC------CCCcEEEEEEEeCCeEEEEcCCCCCCC--CCCcee----eeeeCcEEcCCCcce
Q 004320 17 NTVFKSGPLFIS---SKGIG------WKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEV----NLTLGGIDLNNSGSV 81 (761)
Q Consensus 17 ~~v~KeGyL~l~---KKG~~------~k~WKKRWfVL~~~~L~yYKd~~~s~p--~~~~~~----~i~L~~I~L~~~~sv 81 (761)
...+++|.|.+. ++|.. ...++.|||.|-.+.|.|.|-...... ..+..+ .+++..+.+...
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~--- 284 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN--- 284 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECC---
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEc---
Confidence 358899977542 23310 235789999999999999887542110 011121 123333333221
Q ss_pred eeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
..+.+..|.|...+ ....|.|+|.|.++...|+.+|+.++...
T Consensus 285 --~~~~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 327 (353)
T 1kz7_A 285 --VKGDTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTSQ 327 (353)
T ss_dssp --BTTBTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 12234567776533 25789999999999999999999999643
No 110
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=94.55 E-value=0.18 Score=58.28 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=62.8
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEe
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFP 95 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~-~~~kk~~Fvit~ 95 (761)
...+++|.|.+ .....+.++.||+.|-.+.|.|.|..... ..-...+++..+.+.....-.. ...-++.|.+..
T Consensus 404 grll~~G~l~~--~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~---y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~ 478 (587)
T 3ky9_A 404 GRPKIDGELKI--TSVERRSKMDRYAFLLDKALLICKRRGDS---YDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIE 478 (587)
T ss_dssp CCEEEEEEEEE--ECSSCCSCEEEEEEEETTEEEEEEEETTE---EEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEE
T ss_pred CceEEEeeEEE--EeccCCCcceEEEEEECCEEEEEEecCCE---EEeeeeechhhceeeecCCCCcccccccceeEEEE
Confidence 34789996653 33334678999999999999998765211 1111224444444433211000 011224566655
Q ss_pred cCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 96 ~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
. .+.+.|.|+|.|.++...|+.+|+.++..
T Consensus 479 ~-~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 479 D-QGAQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp T-TC---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred c-CCCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 3 22378999999999999999999999964
No 111
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.53 E-value=0.97 Score=43.72 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CC-------C-CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG---QF-------S-SSRGMDSKTRAELEEIALAEADVARLK 686 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~---~~-------~-~~~~~p~~~~~ll~eia~~E~~v~~Le 686 (761)
.+...|.+||+||..||-+|..|+.-|.--.....---| .| . -=..+-...+.|-+-|..||-+-+.+|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455668899999999999999999655433221100000 00 0 001122344566677777788888887
Q ss_pred ----HHHHHHHHHHHHHHhhhc
Q 004320 687 ----QKVAELHHQLNQQRQHHY 704 (761)
Q Consensus 687 ----~~~~~l~~~l~~~~~~~~ 704 (761)
=++..|+..+.||..++-
T Consensus 139 id~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888876553
No 112
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=94.31 E-value=0.18 Score=53.90 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCcee-----eeeeCcEEcCCCcc--eee-----
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV-----NLTLGGIDLNNSGS--VVV----- 83 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~-----~i~L~~I~L~~~~s--v~~----- 83 (761)
....+++|.|. +++ .+.|||.|-.+.|.|.+...... +..+ .+++..+.+..... +..
T Consensus 229 ~r~li~~G~l~--~~~-----~~~~~~fLF~d~Ll~~k~~~~~~---~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~ 298 (346)
T 2z0q_A 229 SRVLCCHGELK--NNR-----GVKLHVFLFQEVLVITRAVTHNE---QLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLR 298 (346)
T ss_dssp CCCEEEEEEEE--ETT-----SCEEEEEEESSEEEEEEEEEETT---EEEEEESSCCEEGGGCEEEECCTTTSCCCSCC-
T ss_pred CeEEEEeceeE--ECC-----CcEEEEEECCCcEEEEEEeccCC---ceeeeeecCCcchhhceeeecCCCccccCcccc
Confidence 44578999654 322 26899999999999887532110 1111 12333333322111 000
Q ss_pred -----ccCCcceEEEEec-CCCCceEEEEecChHHHHHHHHHHHHHH
Q 004320 84 -----REDKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELAL 124 (761)
Q Consensus 84 -----~~~kk~~Fvit~~-~~~grty~LqAeSeeE~~eWI~AL~~aI 124 (761)
....+++|.+... +..+..|.|+|.|.++...|+.+|+.|+
T Consensus 299 g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 299 GAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp -CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 0113457777643 2246799999999999999999999986
No 113
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.08 E-value=0.21 Score=61.77 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=44.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ------------------------ALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~------------------------~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
...||..-.+||.|+..+.+.|+.||..+..-+. .+..+-..|+.|++.|++++++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888999998888888888765432111 1122334566677777777777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 640 ERDLRAALEVGLSMSSGQFSSSRGMDSKT-RAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 640 e~~~~~~Le~~l~~~~~~~~~~~~~p~~~-~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
...-...||..+. ++ .+|=+.|+-||.+...|+|++.+|...+-.+
T Consensus 1003 ~~ke~~~lee~~~--------------~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1003 TQTEKKTIEEWAD--------------KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666553 11 2444667888999999999999888544333
No 114
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.84 E-value=0.38 Score=44.12 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=28.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHH
Q 004320 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERR 623 (761)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r 623 (761)
.|..-.+||.+|..-.+.||.|+..+.+-+.+..+.|
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999998889999999998887666554443
No 115
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=93.15 E-value=0.016 Score=65.20 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred CcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC----------cee-----eeeeCcEEcCCCcce
Q 004320 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG----------GEV-----NLTLGGIDLNNSGSV 81 (761)
Q Consensus 17 ~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~----------~~~-----~i~L~~I~L~~~~sv 81 (761)
...+++|.|+ +. +.++.|||.|-.+.|.|.+-.+...+..+ ..+ .+++.++.+.....
T Consensus 251 r~li~eG~l~--~~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d- 323 (510)
T 3jzy_A 251 RKLLHSGKLY--KT----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTD- 323 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEE--Ec----CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCC-
Confidence 4577888665 22 34789999999999999875443211001 001 12333333332111
Q ss_pred eeccCCcceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 82 ~~~~~kk~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
....+++|.+... .++|+|+|.|.++...|+.+|+.++...
T Consensus 324 --~~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 324 --PSSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp ----------------------------------------------
T ss_pred --CCccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 1234467777653 5789999999999999999999998754
No 116
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=92.57 E-value=0.32 Score=60.09 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=64.0
Q ss_pred CCcEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC-------ceeeeeeCcEEcCCCcceeeccCCc
Q 004320 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG-------GEVNLTLGGIDLNNSGSVVVREDKK 88 (761)
Q Consensus 16 ~~~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~-------~~~~i~L~~I~L~~~~sv~~~~~kk 88 (761)
....+++|.|. +.+.+ +.|||.|-.+.|.|.|.........| -...+++..+.+.... ....-+
T Consensus 441 ~r~Li~eG~l~--~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~---d~~~~~ 511 (1049)
T 3ksy_A 441 CNEFIMEGTLT--RVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKD---DTNEYK 511 (1049)
T ss_dssp CSCCCCEEEEE--ETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCC---CSSSCC
T ss_pred cceEEEeceEE--EEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECC---CCcccc
Confidence 45688999554 44432 78999999999999987643211111 1112333333333211 112234
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhcC
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~a 127 (761)
+.|.+.. .++..|.|+|.|.++...|+.+|+.+..++
T Consensus 512 ~~F~I~~--~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~ 548 (1049)
T 3ksy_A 512 HAFEIIL--KDENSVIFSAKSAEEKNNWMAALISLQYRS 548 (1049)
T ss_dssp SEEEECC--TTSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 6677654 345799999999999999999999887644
No 117
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=92.40 E-value=0.44 Score=56.10 Aligned_cols=97 Identities=21% Similarity=0.375 Sum_probs=59.4
Q ss_pred CCCCcEEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceE
Q 004320 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLT 91 (761)
Q Consensus 14 ~~~~~v~KeGyL~l~KKG~-~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~-~~kk~~F 91 (761)
.....+++.| ++.|.|+ ....|++|++.|..+.+.+.-.... ...+ +.+.....+... .....++
T Consensus 554 ~~~~~~i~~G--~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~-----~~~l------~~~~~v~~v~k~~i~~~~~l 620 (689)
T 3v5w_A 554 ALGKDCIMHG--YMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEA-----PQSL------LTMEEIQSVEETQIKERKCL 620 (689)
T ss_dssp TSSSCCCEEE--EEEEC-------CEEEEEEEETTEEEEECTTSC-----CCEE------EEGGGEEEEEEEESSSCEEE
T ss_pred ccCCcceeec--ccccCCCcccchhhhhccccCCCcccccccCCC-----Ccce------eeeccccccccCcCCCCcce
Confidence 3456788999 4446654 4568999999999999888744211 1111 222222111111 1223344
Q ss_pred EEEecCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 92 vit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+. .+++++|++++.+..++.+|..+|+.+-.
T Consensus 621 ~~~--~k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 621 LLK--IRGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEE--ETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eee--ecCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 444 45789999999999999999999998765
No 118
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=92.36 E-value=0.43 Score=42.32 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~--~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
.+||..|++.|.+|++.+++|..=|.+|++...- ....+.-|..+-.+.-+.-..|..|.+++-+++..+.++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788899999999999999999999999987642 12344456666666666667788888888888888888743
No 119
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=91.59 E-value=1.7 Score=46.91 Aligned_cols=107 Identities=12% Similarity=0.183 Sum_probs=59.4
Q ss_pred CcEEEEEeee-eeecC--CCCCCcEEEEEEEeCCeEEE-EcCCCCCCCC-C--------------CceeeeeeCcEEcCC
Q 004320 17 NTVFKSGPLF-ISSKG--IGWKSWKKRWFILTRTSLVF-FKNDPSALPQ-R--------------GGEVNLTLGGIDLNN 77 (761)
Q Consensus 17 ~~v~KeGyL~-l~KKG--~~~k~WKKRWfVL~~~~L~y-YKd~~~s~p~-~--------------~~~~~i~L~~I~L~~ 77 (761)
...+..|.+. +...+ +..+..+.|++.|-.+.|.+ .+.....+.. + .-...+++..+.+..
T Consensus 236 g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~ 315 (377)
T 1foe_A 236 GDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRA 315 (377)
T ss_dssp GGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEEC
T ss_pred cceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEe
Confidence 3466677443 21110 11234577888888887665 4532111100 0 011234555555544
Q ss_pred CcceeeccCCcceEEEEec-----CCCCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 78 SGSVVVREDKKLLTVLFPD-----GRDGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 78 ~~sv~~~~~kk~~Fvit~~-----~~~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
... .....+.+|.+... +...+.|.|+|.|.++...|+.+|+.++.
T Consensus 316 ~~~--~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 316 LPS--ADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CCC--TTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC--CccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 221 11122345655421 23467899999999999999999999996
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.38 E-value=2.6 Score=38.99 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=17.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~ 645 (761)
.+-|...+..++..||..|..|+.+|..|.+...
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554443
No 121
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.36 E-value=2.2 Score=36.80 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHH
Q 004320 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAE 671 (761)
Q Consensus 592 ~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~l 671 (761)
.+||.+|..-.-.|+.|+..+.. +...|..++.+.+.|..+|..+|.-+. ..+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn-----------~~~~~edfk~KyE~E~~~R~~~E~d~~--------------~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDN-----------LAEDIMRLREKLQEEMLQREEAENTLQ--------------SFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhh
Confidence 46888887666777777665543 566788889999999999999998775 23566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 672 LEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 672 l~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
+.+..+.=.+ ||.+|..|...|.=
T Consensus 58 vD~a~l~r~d---LE~kvesL~eEl~f 81 (86)
T 3swk_A 58 VDNASLARLD---LERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6666665544 78888887776653
No 122
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.82 E-value=5.2 Score=45.52 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
++.-+++.-+|.++.+||+++...+.++.+.+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 4455666666677777777666666655544443
No 123
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.93 E-value=9.2 Score=33.69 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
.++......+-++.+|+.+|.+|+..|...|..
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~ 48 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEE 48 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445557788888999999998888855543
No 124
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.75 E-value=3.5 Score=45.78 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
..+.++..|+|++.++|+-|.+=+.--..-..- .+.+-..|..+.-.-++-|.-+|.+|..|++++.+++.++.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHT------VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999998887644321110000 00011223333333456788899999999999999998887
Q ss_pred HHH
Q 004320 698 QQR 700 (761)
Q Consensus 698 ~~~ 700 (761)
++|
T Consensus 468 ~~~ 470 (471)
T 3mq9_A 468 RLR 470 (471)
T ss_dssp HHH
T ss_pred Hhc
Confidence 776
No 125
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.20 E-value=3.3 Score=40.86 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=15.2
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVA 683 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~ 683 (761)
+-.+--..|+.+|+||.|+-
T Consensus 135 ~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 135 FEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999998875
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.88 E-value=43 Score=34.11 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
+...++|..||..++..+..||.++.++..++-
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777766666553
No 127
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=72.53 E-value=4.4 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.||-+=..+-.+..+||.||.+|+.-|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3566666777888999999999998775
No 128
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=72.17 E-value=5.6 Score=41.22 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCcceEEEEecCCCC-ceEEEEecChHHHHHHHHHHHHHHh
Q 004320 86 DKKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 86 ~kk~~Fvit~~~~~g-rty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+.++|.+.. .+| .+++|+|++..++.+|+.+|+.+|.
T Consensus 224 ~~~~~fev~s--~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 224 PEPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp SSSCEEEEEE--TTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEEC--CCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 3567777754 334 5689999999999999999999874
No 129
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=71.51 E-value=4.8 Score=28.25 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=22.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.||-+=..+-.+..+||.||.+|+.-|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3566667778888999999999998775
No 130
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=71.12 E-value=6.3 Score=28.18 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=23.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
.|+.+=..+-.+...||++|.||++.|-+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 35666677888899999999999988754
No 131
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.24 E-value=29 Score=39.33 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=15.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhH
Q 004320 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (761)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~ 617 (761)
+..++.....|+.+++..-+.-+.++..++.+++
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334444444444444444444444444444444
No 132
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=69.69 E-value=7.1 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
|+.+=..+-.+...||+||.||++-|-.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 5556667778889999999999987753
No 133
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.51 E-value=8 Score=27.34 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.||.|=..+-.+..+||.||.+|+.-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4666777788888999999999998764
No 134
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.43 E-value=45 Score=36.68 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=53.1
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG---MDSKTRAELEEIALAEADVAR 684 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~---~p~~~~~ll~eia~~E~~v~~ 684 (761)
||..|-+........=..||.-|.+|+..-..=..+..++....+. ++-+.|.. +-.+.+.+++||..+|..|.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555556666666666666556666677666543 22233332 245777899999998887666
Q ss_pred HHHHHHHHHHHHH
Q 004320 685 LKQKVAELHHQLN 697 (761)
Q Consensus 685 Le~~~~~l~~~l~ 697 (761)
-|.++..|+.+|.
T Consensus 103 ~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 103 HENTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655443
No 135
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.25 E-value=6.6 Score=27.66 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.||.|=..+-.+...||+||.||+.-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4677777888899999999999998664
No 136
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=65.18 E-value=10 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
|+-+=..+-.+...||++|.+|++-|-
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 556666777888999999999998763
No 137
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.14 E-value=83 Score=28.71 Aligned_cols=37 Identities=41% Similarity=0.450 Sum_probs=30.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
.+.++..+.+....|.++...|+.||+.|+..-.-.+
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~E 68 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3667788889999999999999999999988744333
No 138
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=64.74 E-value=9 Score=47.86 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
.+...+..|++++..|+.+|+++..-...|+..+
T Consensus 917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777777766666555554433
No 139
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=64.31 E-value=8.5 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=22.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.||.|=..+-.+...||+||.||++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3566667778888999999999998764
No 140
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=63.48 E-value=1.1e+02 Score=29.61 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHHhhhhhHHH----HHHHHHHhhhh-hhhhhhHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKNDL----RHRIAKEARGN-AILQASLERRKQAL-------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~lq~~~~~~k~~~-------~~~r~~Le~~V~~Lq~~L~~e~~~~~~L 647 (761)
.-..+++|-.+=+.| +.++....-.+ +.||.++.+|+..+ ..-+.+||++...|+..+..=..-+.-+
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556655544443 44444444444 45899999999874 4445566666666666533211111122
Q ss_pred HHhhcCCC-CCCC------CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 648 EVGLSMSS-GQFS------SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (761)
Q Consensus 648 e~~l~~~~-~~~~------~~~~~p~~~~~ll~eia~~E~~v~~Le~~~ 689 (761)
+.-...++ +..+ .+.-+-.+.-++.+|...+|..|-.|.+=+
T Consensus 90 ~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al 138 (174)
T 2p22_A 90 QQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRML 138 (174)
T ss_dssp HHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 2111 223344677899999999999988876643
No 141
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.36 E-value=12 Score=26.34 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=21.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
.||-+=..+-.+...||+||.+|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356666677788899999999999865
No 142
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=62.24 E-value=31 Score=33.42 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=51.8
Q ss_pred CcEEEEEEEeC-----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEecCh
Q 004320 36 SWKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (761)
Q Consensus 36 ~WKKRWfVL~~-----~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAeSe 110 (761)
.=|.|+.+|.- +....+|.+.... + .+.+ -..=+|.....+........-|.++. +++||.+|.+.
T Consensus 63 ~KK~R~L~lav~~~~sgrV~lhK~K~N~n--g--sfsi-GkTW~L~ELk~Ie~~~~~~~gF~ltl----~K~Y~W~a~s~ 133 (171)
T 3hie_A 63 NKKKRLLILSAKPNNAKLIQIHKARENSD--G--SFQI-GRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNSA 133 (171)
T ss_dssp GEEEEEEEEEECTTCTTCEEEEEEEECTT--S--CEEE-EEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEECSSH
T ss_pred CccceEEEEEEecCCCceEEEEEEEECCC--C--cEEe-eeeeecccceeeeccCCCCCcEEEEe----CCeEEEecCCH
Confidence 34778877632 3567777665432 1 1111 11122333222222222356799988 79999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004320 111 EDLYEWKTALELALAQA 127 (761)
Q Consensus 111 eE~~eWI~AL~~aI~~a 127 (761)
.|+..++..|-+...+.
T Consensus 134 ~Er~~FI~sL~K~y~ky 150 (171)
T 3hie_A 134 KERTVFIKSLITLYIQT 150 (171)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888644
No 143
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.73 E-value=68 Score=39.69 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 666 SKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
.++..|=.|.+.||..+..||..+...
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666444444
No 144
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.68 E-value=1.1e+02 Score=34.17 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=18.3
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 607 ILQASLERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 607 ~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
.||++++.+.....+....+.+--.+|+++.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4788887777666665555444444444433
No 145
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.58 E-value=70 Score=30.40 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (761)
Q Consensus 619 ~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l 651 (761)
+...+...+.++.+|+.+|.+|+..|...|...
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566788999999999999999998666544
No 146
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.17 E-value=8.1 Score=43.38 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccccccccccccccccc
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQQSFSS 728 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 728 (761)
++..-|..|++|+.-|.++=.+|.-|...+--+...+.++=.-+.....-+..|+.+||.++
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHH
Confidence 33444444555555554455555555555555555454444334444445555555555554
No 147
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=60.99 E-value=17 Score=28.42 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
++++.=.+|.||..+|++-|++|+.-|.-||..+-
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778999999999999999999999998663
No 148
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=60.99 E-value=9.4 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
||-+=..+-.+..+|+.||.||++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 555666777788999999999998775
No 149
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=60.89 E-value=61 Score=27.72 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004320 673 EEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~ 694 (761)
.||.-+|.+|.++.+.|..|..
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 6777788888888888877764
No 150
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.68 E-value=38 Score=39.07 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=34.4
Q ss_pred HHHhhhhhhhhhhH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 599 AKEARGNAILQASL-----ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 599 ~~~~~~~~~lq~~~-----~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
.++..+++|||+.- ++.....+.++.+.|++...|+++..+...+...=++-
T Consensus 467 ~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 523 (592)
T 1f5n_A 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523 (592)
T ss_dssp HTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888863 34455567777778888888777766655555544443
No 151
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=59.46 E-value=33 Score=30.32 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhHHHHHHH-HHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
+-.+-+|||.+|.+-+.+| .-|++..+||..-=.+-|.-..+||..++.+|.+.+.+-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999 569999999998877777777899999999999887654
No 152
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=57.42 E-value=16 Score=26.17 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=21.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
|-.|+.+||.+-.-||.+|.||+.-+.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3457888899999999999998876543
No 153
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.00 E-value=40 Score=32.53 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 624 LALEQDVSRLQEQLQAERDLRAALEVG 650 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~Le~~ 650 (761)
..+|+-+..||.++..-.+-+..|+.-
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke 70 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKD 70 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 154
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.95 E-value=24 Score=38.86 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHH--------Hhhhhh------hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 587 LEITKNDLRHRIAK--------EARGNA------ILQASLERRKQALHERRLALEQDVSRLQEQLQAER 641 (761)
Q Consensus 587 ~~~~~~~~~~~~~~--------~~~~~~------~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~ 641 (761)
.++....||.+|++ |++.|. .||+||++++.+...|-.+||-+|.+|..+|++-+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444557777742 222222 38999998888877777789999999988887643
No 155
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.94 E-value=8.1 Score=25.35 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~ 687 (761)
|.-.|-.|||.||-||+-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 445577889999999988875
No 156
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.52 E-value=64 Score=29.56 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
|-.-|..|+-+|+.-+..+..||+.+.-. . ...=.++.-+...|..||.++..++..+-++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~------------e-~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET------------K-GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888889999887411 0 1112245555666666666666666655544
No 157
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=56.25 E-value=37 Score=24.95 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 004320 675 IALAEADVARLKQKVA 690 (761)
Q Consensus 675 ia~~E~~v~~Le~~~~ 690 (761)
||-||.+|++|-+++.
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5777888888877763
No 158
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.05 E-value=33 Score=29.10 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHhhHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004320 590 TKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~----------~~~r~~Le~~V~~Lq~~L~~ 639 (761)
..-+||+....|++.-..+|-.|.+=|.++ ..+-..|+.|+.+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788888888888888888876655543 44556799999999999877
No 159
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=54.99 E-value=17 Score=26.64 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 673 EEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
+|+|.||.|+.-||+++..|+..|.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999887764
No 160
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=54.61 E-value=17 Score=35.43 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCC-ceEEEEecChHHHHHHHHHHHHHHh
Q 004320 87 KKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 87 kk~~Fvit~~~~~g-rty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+.+|.+.. .+| .+..|+|.+..++..|+.+|+..|.
T Consensus 140 e~r~fEv~s--~DG~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 140 EPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp SSCEEEEEE--TTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEc--CCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 445666643 234 5899999999999999999998874
No 161
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=54.60 E-value=37 Score=35.67 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=52.8
Q ss_pred CCCcEEEEEEEeCC-----eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEec
Q 004320 34 WKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE 108 (761)
Q Consensus 34 ~k~WKKRWfVL~~~-----~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~~~~~grty~LqAe 108 (761)
.+.-|.||.+|.-. .+.+||.+.... +.+.+ -..-+|.....+........-|+++. +++||.+|.
T Consensus 131 ~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~n----gsFsI-GKTW~L~ELk~Id~~~~~~~gF~LTl----~K~YyW~A~ 201 (320)
T 3a58_A 131 LENKKKRLLILSAKPNNAKLIQIHKARENSD----GSFQI-GRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETN 201 (320)
T ss_dssp GGGEEEEEEEEEECSSCTTCEEEEEEEECGG----GCEEE-EEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEEES
T ss_pred ccccCceEEEEEEecCCCceEEEEEEEecCC----CceEe-cceechhhhhhhhcccCCCCceEEEe----CCceEEecC
Confidence 34568888777543 477787755432 11111 11122332222221113346799988 799999999
Q ss_pred ChHHHHHHHHHHHHHHhc
Q 004320 109 TSEDLYEWKTALELALAQ 126 (761)
Q Consensus 109 SeeE~~eWI~AL~~aI~~ 126 (761)
+..|+..+|..|-+...+
T Consensus 202 s~kER~~FI~sLvKiy~K 219 (320)
T 3a58_A 202 SAKERTVFIKSLITLYIQ 219 (320)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 162
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=54.47 E-value=25 Score=23.90 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
|||.|-.||+-|++++..|++.+-
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666665555543
No 163
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=54.44 E-value=56 Score=28.07 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e----ia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
||+..+.|++++++|..++.--|+.+ +-+.+ .+-|+.++.....++.+||.+|.
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLR------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777555433 22223 45678888888899999988875
No 164
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=52.18 E-value=1.6e+02 Score=28.18 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=48.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 004320 613 ERRKQALHERRLALEQDVSRLQEQLQAERD------------LRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEA 680 (761)
Q Consensus 613 ~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~------------~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~ 680 (761)
++--+...+.+.+||+|-++|++ +..|++ ||..|-.|-+ -+++.-.=.=|++|++
T Consensus 19 e~aek~~~~k~~~le~ek~~l~~-~e~~r~k~~~h~~~k~~qlre~~d~gtt------------~~~i~~m~~yI~llrE 85 (169)
T 3k29_A 19 DRAEKVVKEKRRLLELEQEKLRE-RESERDKVKNHYMQKIRQLREQLDDGTT------------SDAILKMKAYIKVVAI 85 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHH
Confidence 33344567778888888888865 333333 3444444322 2355555566888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004320 681 DVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 681 ~v~~Le~~~~~l~~~l~~~~~ 701 (761)
..+.||++|.+...++-.++.
T Consensus 86 rea~lEqkVaeq~e~Ve~e~q 106 (169)
T 3k29_A 86 QLSEEEEKVNKQKENVLAASK 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777776664
No 165
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.15 E-value=25 Score=25.13 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
|-.|+.+||.+-.-||.+|.||...+.+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3467889999999999999999877654
No 166
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=51.54 E-value=1.1e+02 Score=29.90 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=69.1
Q ss_pred HHHHhhhhhHHH---HHHHHHHhhhhhhhhhhHHHhhHH----------------------------------------H
Q 004320 583 AIQRLEITKNDL---RHRIAKEARGNAILQASLERRKQA----------------------------------------L 619 (761)
Q Consensus 583 ~~~~~~~~~~~~---~~~~~~~~~~~~~lq~~~~~~k~~----------------------------------------~ 619 (761)
+|..|...=.+| |..|..|++.|+.|.+.|+..=.. .
T Consensus 20 Li~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~ 99 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETR 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccC
Confidence 444444443333 567889999999988887754321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERD-----------LRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~-----------~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
++-|..|.+--..|+.|+.+=+. ++.+|.+.|.. ..+. --.++-.| -+||.|-.-|++-|--.|+
T Consensus 100 ~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~--eql~DY~~fv~mK-a~Ll~eqReLddkIklgeE 176 (190)
T 3thf_A 100 QQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA--DMCADYDYFINMK-AKLIADARDLAVRIKGSEE 176 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHH
Confidence 45577788888888888876544 45555554431 0110 00112222 3688888888988888888
Q ss_pred HHHHHHHHHHH
Q 004320 688 KVAELHHQLNQ 698 (761)
Q Consensus 688 ~~~~l~~~l~~ 698 (761)
|+..|+.-|-|
T Consensus 177 QL~~L~~sL~q 187 (190)
T 3thf_A 177 QLSSLSDALVQ 187 (190)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHHhhcc
Confidence 88888765543
No 167
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=51.51 E-value=70 Score=35.18 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 625 ~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
+|.++-..|+.++++=+.-|..+...+....| ..+.+|++++..+-++|..||+++..+..+|...-
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPP---------EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445666666653111 46788999999999999999999999999987655
No 168
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=51.39 E-value=65 Score=33.77 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=47.2
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHH
Q 004320 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELE 673 (761)
Q Consensus 609 q~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~ 673 (761)
|+.+..++..+++.+.+|.+++.+|..+-..=.....+|++--....-.|..+..+-..|+..|+
T Consensus 12 ~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le 76 (302)
T 3ibp_A 12 VSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLE 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHH
Confidence 45566778888999999999999999998888888888887665554455544455555655554
No 169
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=50.83 E-value=35 Score=29.40 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhh
Q 004320 578 GEEELAIQRLEITKNDLRHRIAKEAR 603 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (761)
+.|-.+-++||..|..|+..|.||.|
T Consensus 14 ~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 14 LAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456779999999999999999987
No 170
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.08 E-value=30 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 670 AELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
+||.-|.-+-.||++-|+||.+|+.+|.+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888999999999999998877654
No 171
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=50.04 E-value=23 Score=32.13 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=56.7
Q ss_pred cEEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-CCcceEEEEec
Q 004320 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVLFPD 96 (761)
Q Consensus 18 ~v~KeGyL~l~KKG~~~k~WKKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~-~kk~~Fvit~~ 96 (761)
..++.|.+.+.... +.=+.|++-|-...|.|.|-... .++..+ .--..|.+....-..... .....|.+...
T Consensus 9 ~Ll~q~~f~V~~~~---~k~~eR~vFLFe~~ilf~K~~~~---~~~~~Y-~~K~~ikl~~~~lte~~~~~d~~kFeiw~~ 81 (119)
T 1fho_A 9 RIIRHDAFQVWEGD---EPPKLRYVFLFRNKIMFTEQDAS---TSPPSY-THYSSIRLDKYNIRQHTTDEDTIVLQPQEP 81 (119)
T ss_dssp CSSEEEEEEECSTT---CSCEEEEEEEETTEEEEEEECCS---SSSCCC-SSCCEEESSSCEEEEECTTCCEEEEECCST
T ss_pred CccccCceEEEeCC---CCcceEEEEEecCcEEEEEEecC---CCCCcE-EEeeEEeeceeEEEecCCCCCCcEEEEccC
Confidence 45677755433221 22477899999999999987621 111111 111223333322111112 33445777543
Q ss_pred CCCCceEEE--EecChH-HHHHHHHHHHHHHh
Q 004320 97 GRDGRAFTL--KAETSE-DLYEWKTALELALA 125 (761)
Q Consensus 97 ~~~grty~L--qAeSee-E~~eWI~AL~~aI~ 125 (761)
.. ...|.+ +|.|.+ ..+.|+..|+.++.
T Consensus 82 ~~-~~~~il~~qA~s~e~~K~~Wv~~I~~~~~ 112 (119)
T 1fho_A 82 GL-PSFRIKPKDFETSEYVRKAWLRDIAEEQE 112 (119)
T ss_dssp TC-CCBCCCCCSSSSCSHHHHHHHHHHHTCCH
T ss_pred CC-CceEEEeeecCCcHHHHHHHHHHHHHHHH
Confidence 32 356778 999999 99999999998543
No 172
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.78 E-value=35 Score=31.80 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004320 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 624 ~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
.-.+.++.+|+.+|.+|+..|...| .+...+++.|.+|-..|+.|.|..
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE-------------------------------~~~~~ie~ElE~LTasLFeEAN~M 90 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAE-------------------------------EEADKLNKEVEDLTASLFDEANNL 90 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHH-------------------------------HTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999988554 455556777777777777777655
Q ss_pred cC
Q 004320 704 YG 705 (761)
Q Consensus 704 ~~ 705 (761)
..
T Consensus 91 Va 92 (135)
T 2e7s_A 91 VA 92 (135)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 173
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.69 E-value=1.2e+02 Score=28.66 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=46.5
Q ss_pred cCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh-------H-HHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 566 RKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQAS-------L-ERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~-------~-~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
|-++.+.++|.. .+.|| ..|+.+..+...=.+....++.. - ...-..++..+..|++.+..|.+.|
T Consensus 18 ~~~~~~~~md~~-----l~~rL-~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 18 RSNPQTDSMDDL-----LIRRL-TDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHH-----HHHHH-HHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777766 55555 24555555543322222222221 1 1223355666677777787777777
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004320 638 QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 638 ~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~ 701 (761)
++=...-.+|... ...|=.+..++|..+.+|+++=..|=.++-+...
T Consensus 92 ~eK~K~~e~l~DE-----------------l~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 92 ALKNKNTERLNAA-----------------LISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555555543 3456677788888888888877666655555443
No 174
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.62 E-value=22 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
|-.|+.+||.+..-||.||.+|..=
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3468899999999999999999753
No 175
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.18 E-value=20 Score=25.20 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
|-.|+.+||.|-.-||.||.+|..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 446888999999999999999875
No 176
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=47.81 E-value=1.1e+02 Score=29.65 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 615 ~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
++.++++-|.+-..++..|+++|...+ .-|...+. -+.+=+.++++|..||+.|..+ |..+-.+++.
T Consensus 72 Qq~ql~~I~~e~r~~~~~Lr~ql~akr---~EL~aL~~-------a~~~DeakI~aL~~Ei~~Lr~q---L~~~R~k~~~ 138 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSALRQQLISKR---YEYNALLT-------ASSPDTAKINAVAKEMESLGQK---LDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHT-------SSSCCHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-------CCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344444555555555555555544322 22322221 1222356778888888777766 4555555555
Q ss_pred HHHHH
Q 004320 695 QLNQQ 699 (761)
Q Consensus 695 ~l~~~ 699 (761)
++..+
T Consensus 139 em~Ke 143 (175)
T 3lay_A 139 AMAQA 143 (175)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55444
No 177
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.11 E-value=1.1e+02 Score=27.87 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 626 Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
|-..|..|+-+|+.=+..+..||+.+.-. . ...=.++..+...|..||.++..++..+-++
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~------------e-~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADA------------E-QRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44567788888888888899999887411 1 1111244555556666666666666655444
No 178
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.86 E-value=45 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=17.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 610 ASLERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 610 ~~~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
+.++-|...+..++..||..|..|+.+|
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666655
No 179
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.54 E-value=24 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
|-.|+.+||.+-.-||.||+||..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446889999999999999999975
No 180
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=44.74 E-value=1.2e+02 Score=27.67 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=47.7
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-c--CCCCceEEEEecChHHHH
Q 004320 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D--GRDGRAFTLKAETSEDLY 114 (761)
Q Consensus 38 KKRWfVL~~~~L~yYKd~~~s~p~~~~~~~i~L~~I~L~~~~sv~~~~~kk~~Fvit~-~--~~~grty~LqAeSeeE~~ 114 (761)
.-|-++++|..+.+--.+.... ...+.....+.++.+..+.+......-|.+.+ . ....+.|+|.|.+.+|+.
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~----~~~~~KTtS~H~s~Vv~~K~s~k~P~~FKivV~k~~~~e~KrYdfEA~s~~ea~ 103 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIH----WHDNVKTKSLHISQVVLVKKSKRVPEHFKIFVRREGQDDIKRYYFEAVSGQECT 103 (121)
T ss_dssp EEEEEEEETTEEEEECCC-----------CCCCEEEEGGGEEEEEECSSCTTEEEEEECCTTCSSCEEEEEEESSHHHHH
T ss_pred ccEEEEEcCceEEEecCCCCcc----cccCCcEEEEEEeeEEEEEecccCCCcEEEEEEccCCCCcceeEEEeCCHHHHH
Confidence 4567788888887774332110 00011222344444333322222223344433 3 233489999999999999
Q ss_pred HHHHHHHHHHh
Q 004320 115 EWKTALELALA 125 (761)
Q Consensus 115 eWI~AL~~aI~ 125 (761)
+=+..|+..++
T Consensus 104 EIV~~ik~~~~ 114 (121)
T 3ulb_A 104 EIVTRLQNLLS 114 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999885
No 181
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.21 E-value=26 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
|-.|+.+||.+-..||.||.+|..-
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3468889999999999999999753
No 182
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.22 E-value=31 Score=43.09 Aligned_cols=10 Identities=40% Similarity=0.611 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 004320 288 RLLQRILRMM 297 (761)
Q Consensus 288 ~lL~~Ll~fL 297 (761)
.++.||+..+
T Consensus 436 ~lF~wlv~~i 445 (1184)
T 1i84_S 436 RLFRWILTRV 445 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444554443
No 183
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.06 E-value=1.5e+02 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 614 RRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 614 ~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.+-..++..+..|+.++..|++.|.
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566667777777766664
No 184
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=41.91 E-value=1.9e+02 Score=25.93 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
|.-=..|.-++.+|+++|.++...|.-||..++...- .=-.++.+|..-+.-.|..+..|-+-...++.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E------~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE------DSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567888899999999999999999998753210 00123344444444444444444444444443
No 185
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=41.26 E-value=43 Score=23.71 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
|+-+=..+-.+...|+.||.+|++-|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44445566777888999999999876
No 186
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.82 E-value=1.1e+02 Score=33.53 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 621 ~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~--~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
+.=.+|.++-..|+.++++=+.-|..+...+.. ..| ..+.+|++++..+-++|..||+++..+..+|..
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG---------KDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC---------SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555554444555666665543 222 122344444445555555555555555544433
No 187
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.77 E-value=2e+02 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 620 HERRLALEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 620 ~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
...|..+|.|+..|++.++.+.-.|.-||.
T Consensus 61 ~~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 61 MLQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 345677777777777777777666666664
No 188
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.39 E-value=39 Score=37.00 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=37.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~ 656 (761)
+++++.++.+.-..|++++.+|+++|.+|..+|+-|.+-+..-.|
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455667777888889999999999999999999999888754444
No 189
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=40.20 E-value=1.9e+02 Score=31.76 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=54.3
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---CCCChhHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS---RGMDSKTRAELEEIALAEADVAR 684 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~---~~~p~~~~~ll~eia~~E~~v~~ 684 (761)
||.-|-+....-..-=.+||..|.++-..=..=..+=.+|...+.... -+.| ..+-.+.+..|+|+..+|.-|.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q--~~~~~n~~~~~q~Skkml~~~~~~~~~~~~ 102 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDE--SSKPNMIDAATLKSRKMLEEIMKYEASILT 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT--CCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccc--CCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444556666666666665555666666666654322 1222 22445667799999888888888
Q ss_pred HHHHHHHHHHHHHH
Q 004320 685 LKQKVAELHHQLNQ 698 (761)
Q Consensus 685 Le~~~~~l~~~l~~ 698 (761)
.+.++..|+..+..
T Consensus 103 ~~~~i~~l~~~~~~ 116 (411)
T 3ghg_C 103 HDSSIRYLQEIYNS 116 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777665543
No 190
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.79 E-value=33 Score=28.79 Aligned_cols=49 Identities=35% Similarity=0.499 Sum_probs=31.0
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
.|...|+||=.|+.+=.-++.+||--++..+ +-|..+++-|..|.+.|+
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~----~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVK----QAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4778899999999988889999998877544 444555555555555443
No 191
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.74 E-value=1.2e+02 Score=26.23 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM-----SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~-----~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
.++.+...|.+....|+.++++=..+-..|+..=.- .-|.+-+....+.-...|=..+..++.+|..|+.++..+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666677777666655555555543221 122222223333333444445566666666666666666
Q ss_pred HHHHHHHHh
Q 004320 693 HHQLNQQRQ 701 (761)
Q Consensus 693 ~~~l~~~~~ 701 (761)
+.++..-+.
T Consensus 92 ~~~l~~lk~ 100 (107)
T 1fxk_A 92 MKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 192
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.20 E-value=1.2e+02 Score=33.64 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.+.+|++++..|-++|..||+++.++..+|...-
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998886655
No 193
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=39.17 E-value=62 Score=21.98 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
-.|-.|+|..|++--.|||+|..|..
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34567888888888888888876643
No 194
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.37 E-value=51 Score=24.71 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=21.5
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
|++.+..|...+.+|-.+||.-+..|+.+|+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777777777665
No 195
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.70 E-value=2.3e+02 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004320 674 EIALAEADVARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
.|.-|+.||..|.+++.+.-..+-+.|.++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355556666666666666666666555443
No 196
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.64 E-value=13 Score=28.06 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004320 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (761)
Q Consensus 592 ~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L 637 (761)
..|.+|+|-..|+||.|..-+.| +..--.-||.|+..|.+-.
T Consensus 6 aqlknrvayklkenaklenivar----lendnanlekdianlekdi 47 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVAR----LENDNANLEKDIANLEKDI 47 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHH----HhcccchHHHHHHHHHHHH
Confidence 35777888888999998766543 2233345666666665544
No 197
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.57 E-value=67 Score=36.07 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
+.+|++|+..|-++|..||+++.++..+|...-
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998888655
No 198
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.56 E-value=1.6e+02 Score=25.39 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 672 LEEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 672 l~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
-.|-+-+|.++.+|...+.+++..
T Consensus 69 ~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 69 TNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555544
No 199
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=37.06 E-value=1.8e+02 Score=27.49 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=69.2
Q ss_pred HHHHHHHhhhhhHHHHHH---HH-HHhhhhhhhh------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004320 580 EELAIQRLEITKNDLRHR---IA-KEARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE- 648 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~lq------~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le- 648 (761)
=+.++++-+.-+.++..+ +. -...|+..++ ..+..|-..+++++.+|.+-...=+.+|++=..++....
T Consensus 39 ~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d 118 (185)
T 3lbx_B 39 VELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRD 118 (185)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666333 31 1122444444 457778888888888888777766666665433332111
Q ss_pred -----HhhcCCCCCC---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 649 -----VGLSMSSGQF---SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 649 -----~~l~~~~~~~---~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
.-|......| .++ .-...+.+||.+-..+|.++..-+.+|..|..
T Consensus 119 ~~~~~~Wl~~~e~~L~~~~~g-~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~~ 171 (185)
T 3lbx_B 119 ASVAEAWLIAQEPYLASGDFG-HTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS
T ss_pred HHHHHHHHHHhHhhhccCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 1111111111 122 23457999999999999999999999999875
No 200
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=37.04 E-value=1e+02 Score=36.99 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=27.5
Q ss_pred ceEEEEecCC--CCceEEEEecChHHHHHHHHHHHHHHh
Q 004320 89 LLTVLFPDGR--DGRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 89 ~~Fvit~~~~--~grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.||.|+.... +-+...|.|.+.++++.|+..|+..+.
T Consensus 104 r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~ 142 (816)
T 3qr0_A 104 KCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAY 142 (816)
T ss_dssp HEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 4566655322 113458999999999999999999875
No 201
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.32 E-value=89 Score=26.63 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
+.|-.+|..++++|+.|++....|+--.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667778888888888887776533
No 202
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=36.22 E-value=34 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004320 681 DVARLKQKVAELHHQLNQQRQ 701 (761)
Q Consensus 681 ~v~~Le~~~~~l~~~l~~~~~ 701 (761)
+++.||++-.+|+-|||++|-
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl 34 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERL 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999985
No 203
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.03 E-value=2.6e+02 Score=27.33 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004320 675 IALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 675 ia~~E~~v~~Le~~~~~l~~~l 696 (761)
|..|+.+|..|......|+.+|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 204
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=35.83 E-value=1.3e+02 Score=35.81 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=28.9
Q ss_pred ceEEEEecCCC--CceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 89 ~~Fvit~~~~~--grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
.||.|...... -+++.|.|.+.++++.|+..|+..+..
T Consensus 97 ~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~ 136 (799)
T 2zkm_X 97 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH 136 (799)
T ss_dssp TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 46766653221 136899999999999999999998863
No 205
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.63 E-value=1.4e+02 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=24.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 611 SLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (761)
Q Consensus 611 ~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~ 642 (761)
..++.|..+++.+.+||+.|.++|+.+++++.
T Consensus 357 ~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~ 388 (487)
T 3oja_A 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34555567788888999999999888876653
No 206
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=35.41 E-value=2.1e+02 Score=27.51 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHHHhhhhhHHHHH----HHHH-Hhhhhhhh------hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKNDLRH----RIAK-EARGNAIL------QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~l------q~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
=+..+.+.+.-+.+|.. ||.. -.-|+.-+ -..+..|...++.+-..|.+-+..=+.+|+.-..++....
T Consensus 36 v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~F~~ 115 (218)
T 3edu_A 36 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 115 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888753 2321 00011111 1356777777877777777777777777766555544322
Q ss_pred Hhhc------CCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 649 VGLS------MSSGQFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (761)
Q Consensus 649 ~~l~------~~~~~~~~~-~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~ 699 (761)
.+-. .....++.+ ..=+..+++|+.....+|.++..++.+|..|...-.+-
T Consensus 116 ~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L 173 (218)
T 3edu_A 116 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRL 173 (218)
T ss_dssp HHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 000112211 22245677888888888888888888888887654443
No 207
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.12 E-value=1.9e+02 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~ 649 (761)
.++.+...|.+....|+.++++=..+-..|+.
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555666666666666554444444543
No 208
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=34.86 E-value=16 Score=25.81 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=13.7
Q ss_pred HHHHHHhhhhhhhhh
Q 004320 596 HRIAKEARGNAILQA 610 (761)
Q Consensus 596 ~~~~~~~~~~~~lq~ 610 (761)
.||+.|.-+|+.||-
T Consensus 17 ~~IgDEld~N~ELQr 31 (34)
T 3pk1_B 17 KRIGDELDSNMELQR 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHH
Confidence 589999999999995
No 209
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=34.77 E-value=93 Score=26.40 Aligned_cols=66 Identities=24% Similarity=0.233 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004320 627 EQDVSRLQEQLQAERDLRAALEVGLSMS-SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (761)
Q Consensus 627 e~~V~~Lq~~L~~e~~~~~~Le~~l~~~-~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~ 703 (761)
++-+..|++||.-|..++.=.|+.+..- .| +++-+.||+|--.+=.| =..||.-||.|+.+-.+.+
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~g--------~~~drKlLaeAQqmL~D---Sk~KIe~lRmqI~k~~q~~ 73 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNG--------STKDRKLLLTAQQMLQD---SKTKIDIIRMQLRRALQAD 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999988532 22 33457788775544333 4678888898887744433
No 210
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.03 E-value=47 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
|-.|+.+||.+=..||.||.+|..-
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3467889999999999999998753
No 211
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=33.87 E-value=3.5e+02 Score=26.55 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=71.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHH---------HHhhhhhhhh-hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 578 GEEELAIQRLEITKNDLRHRIA---------KEARGNAILQ-ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~lq-~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~L 647 (761)
..=+.++.+.++-..+|..+-. .+.....--. ..+..|...+.++-..|.+-+..=+.+|++...++..+
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~ 127 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI 127 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888988888876531 2221111101 35667777888887788888887788887777766433
Q ss_pred HHh--------------hcCCCCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 648 EVG--------------LSMSSGQFS--SSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (761)
Q Consensus 648 e~~--------------l~~~~~~~~--~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l 692 (761)
+.+ |......+. ....-+..++.||.+...++.++..++.++..+
T Consensus 128 d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i 188 (250)
T 1quu_A 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSI 188 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111011111 112334589999999999998888888655554
No 212
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=33.09 E-value=1.6e+02 Score=28.98 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=29.1
Q ss_pred ceEEEEecCCCCceEEEEecChHHHHHHHHHHHHHHhc
Q 004320 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (761)
Q Consensus 89 ~~Fvit~~~~~grty~LqAeSeeE~~eWI~AL~~aI~~ 126 (761)
..|-+..+ .+..+.|.|.|..+...|+.-|+-.+..
T Consensus 116 laFSii~~--~~~~L~fvA~s~~~~~~W~DGL~~Llg~ 151 (203)
T 3a98_B 116 LAFSILYD--SNCQLNFIAPDKHEYCIWTDGLNALLGK 151 (203)
T ss_dssp GEEEEEET--TTEEEEEECSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEecC--CCceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 46666643 3478999999999999999999988763
No 213
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.84 E-value=1.2e+02 Score=27.26 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=19.8
Q ss_pred hhhhhhhHHHhhH----------HHHHHHHHHHHHHHHHHHHHH
Q 004320 605 NAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 605 ~~~lq~~~~~~k~----------~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
...|++.++-=+. .+++...+|++++..||.|++
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456555544343 345556667777777776654
No 214
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=31.92 E-value=62 Score=28.22 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=27.7
Q ss_pred hhhhhHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004320 607 ILQASLERRKQALH---ERRLALEQDVSRLQEQLQAER 641 (761)
Q Consensus 607 ~lq~~~~~~k~~~~---~~r~~Le~~V~~Lq~~L~~e~ 641 (761)
.|.+||++.|...+ .+-.+|+-||..|..+|++=.
T Consensus 50 tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 50 TLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999998888765 445669999999999988644
No 215
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.58 E-value=67 Score=24.89 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004320 672 LEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (761)
Q Consensus 672 l~eia~~E~~v~~Le~~~~~l~~~l~~~~~~ 702 (761)
|.=-.-+|-.|.+||+.|++|...|..+...
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333456888999999999999999888653
No 216
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.35 E-value=22 Score=23.29 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAEADVARLKQKVAELH 693 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~ 693 (761)
|-..||..|+-|+|++.+|+
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555543
No 217
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.00 E-value=1.1e+02 Score=34.21 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=24.4
Q ss_pred hHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAE----LEE-IALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 667 ~~~~l----l~e-ia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
.+.+| ++| ...|-++|..||+++..+..+|.+.-
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677 888 88888888889988888888887655
No 218
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=30.99 E-value=3.6e+02 Score=25.77 Aligned_cols=101 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhh---hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQ---ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq---~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~ 657 (761)
...|..++.....++.++..-...-..++ ..+..+...+......|+.++..|+.++..-..-...++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 254 (284)
T 1c1g_A 180 EERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID----- 254 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
.+-.++.-++..+.+++.++..+..+|..
T Consensus 255 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 255 ------------DLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 219
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=30.49 E-value=98 Score=31.43 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=29.8
Q ss_pred HHHhhhhhhhhhh---------HHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHH
Q 004320 599 AKEARGNAILQAS---------LERRKQALHERRLALEQDV-SRLQEQLQAERDL-RAALE 648 (761)
Q Consensus 599 ~~~~~~~~~lq~~---------~~~~k~~~~~~r~~Le~~V-~~Lq~~L~~e~~~-~~~Le 648 (761)
+.||+-|+..++. +.++=.+-.+||-.-|.+| ..|.+...+|+.+ +.+++
T Consensus 127 aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 127 AEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678877766665 3344445566666555554 4566666677665 44554
No 220
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.39 E-value=1.8e+02 Score=26.22 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=22.5
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (761)
Q Consensus 608 lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~ 639 (761)
|.++|++-|...+.+-.+|+-|+..|..+||+
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666677777777766654
No 221
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=30.39 E-value=1.3e+02 Score=24.25 Aligned_cols=56 Identities=27% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH---HhhHHHHHHHHHHHHHHHHHHHH
Q 004320 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQ 636 (761)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~---~~k~~~~~~r~~Le~~V~~Lq~~ 636 (761)
|-.|--||....+++.-++-..++=+-+...++ +|-..-++.=..||+.|.+|+..
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 556777899999999988754443333444433 22222233334466767766654
No 222
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.38 E-value=1.9e+02 Score=32.71 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 004320 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (761)
Q Consensus 621 ~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~ 683 (761)
|+=.+||+.+..|+..++.....-++|+..| ++++.+|--||.+|.
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnL-----------------edq~~kIQRLEvDId 155 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV-----------------RAQLVDMKRLEVDID 155 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 3334788888888888888887778888755 578899999999984
No 223
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.91 E-value=72 Score=24.84 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
-+..+-+|..|++-|-..|..|.+++.+|+.+|.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778899999999999999999999999988753
No 224
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.52 E-value=96 Score=21.07 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 668 TRAELEEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
.-+|-.|||.|-.||+-|+=++..|++.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3466678888888888888888777754
No 225
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=28.90 E-value=1.9e+02 Score=26.26 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 625 ~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
.|.+|+.+|..+|.. +|+=|..|..+. =+..+.++..||+.|+.+|.+|..+
T Consensus 7 ~~K~Eiq~L~drLD~---~~rKlaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDA---IRHQQADLSLVE---------AADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHSCTTT---------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999975 566666666533 2345566777777777777666554
No 226
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.79 E-value=72 Score=29.03 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
-+++|+...-.|.||..|..++.+|+..|....
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999998886543
No 227
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=28.73 E-value=11 Score=24.76 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004320 673 EEIALAEADVARLKQKV 689 (761)
Q Consensus 673 ~eia~~E~~v~~Le~~~ 689 (761)
+++.-||.||-+||.+|
T Consensus 8 anvkrlekevgklegev 24 (28)
T 4dac_A 8 ANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhhhhhhh
Confidence 33444444444444443
No 228
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.60 E-value=52 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 672 LEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 672 l~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
-.|+..||..|..||+++..|+.+|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346778899999999999999888753
No 229
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.50 E-value=1.8e+02 Score=21.60 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004320 671 ELEEIALAEADVARLK 686 (761)
Q Consensus 671 ll~eia~~E~~v~~Le 686 (761)
|-.|||-||.||+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3345555555554433
No 230
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.18 E-value=2.9e+02 Score=30.97 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (761)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~ 700 (761)
..+.+|++|+..|-++|..||+++.++..+|...-
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999999999988887765
No 231
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.18 E-value=70 Score=21.00 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
||..||-|---|||++..|++.+-
T Consensus 1 eidalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHH
Confidence 456788888999999999988764
No 232
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.99 E-value=61 Score=35.57 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~ 658 (761)
++.|++.+.++..+++.++..+++||.+|...|+-|.+.+....|.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 45566677777778888899999999999999999998886555644
No 233
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.95 E-value=50 Score=24.87 Aligned_cols=12 Identities=50% Similarity=0.587 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 004320 675 IALAEADVARLK 686 (761)
Q Consensus 675 ia~~E~~v~~Le 686 (761)
||-||.+|++||
T Consensus 40 ianlekdianle 51 (56)
T 3he4_A 40 IANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 234
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.93 E-value=3.6e+02 Score=24.85 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQK 688 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~ 688 (761)
.+|-.++..|+..+.+||.+
T Consensus 113 ~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 235
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.53 E-value=69 Score=22.65 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQK 688 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~ 688 (761)
|-.|+.+||.+=..||.+|.+|..-
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3457888999999999999988753
No 236
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.35 E-value=1.3e+02 Score=24.02 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 618 ALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 618 ~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
|-..||.-=.+....|+.+.+
T Consensus 13 AA~R~R~KKk~~~~~le~~~~ 33 (63)
T 1ci6_A 13 AATRYRQKKRAEQEALTGECK 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555544555555554443
No 237
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.30 E-value=70 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
|-.|+.+||.+=..||.||++|..
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 346788999999999999999875
No 238
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.28 E-value=2.3e+02 Score=22.41 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (761)
Q Consensus 616 k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~ 691 (761)
+..-.++=..||++|..|+.+- .+|-.+|+.|+.++..|++.+..
T Consensus 18 R~rKk~~~~~Le~~v~~L~~~n-------------------------------~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 18 RNRRRELTDTLQAETDQLEDEK-------------------------------SALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHh
No 239
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.25 E-value=1.3e+02 Score=22.88 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.9
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHh
Q 004320 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (761)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~ 615 (761)
|+=|.-|+|||.+=.-||.|.|+=.-+...-|..+.+|
T Consensus 1 ~dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 1 GALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999999997666666666655543
No 240
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.18 E-value=85 Score=23.30 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=21.5
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004320 610 ASLERRKQALHERRLALEQDVSRLQEQ 636 (761)
Q Consensus 610 ~~~~~~k~~~~~~r~~Le~~V~~Lq~~ 636 (761)
..||.|-+.++.+-.+||+-|+-||..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888888888888753
No 241
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.09 E-value=1.8e+02 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhH
Q 004320 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASL 612 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~ 612 (761)
=|.-|+|||.+=.-||.|.|+=.-+...-|..|
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999986554444444443
No 242
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.08 E-value=2.4e+02 Score=23.36 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 630 VSRLQEQL-QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (761)
Q Consensus 630 V~~Lq~~L-~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~ 698 (761)
|-.||..| .+...++. ++.+ |..+|.++..++..|..|+.+|..
T Consensus 21 i~eLq~~L~~K~eELr~-----------------------kd~~--I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQ-----------------------RDAL--IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
No 243
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.66 E-value=59 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004320 676 ALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 676 a~~E~~v~~Le~~~~~l~~~l~ 697 (761)
..||.-|..||.|+.+|+.+|.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998874
No 244
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.63 E-value=4.1e+02 Score=25.01 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=38.3
Q ss_pred CChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004320 664 MDSKTRAELEEI-ALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (761)
Q Consensus 664 ~p~~~~~ll~ei-a~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~ 707 (761)
+++.+++=++.| ..++.+..+++++...|..+|.|-+.-..||-
T Consensus 67 ~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L~lGsE 111 (150)
T 4dci_A 67 LDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELEMDQI 111 (150)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCE
Confidence 457888888888 89999999999999999999999988777764
No 245
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.34 E-value=1e+02 Score=24.26 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKV 689 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~ 689 (761)
.+|-.+|..|+.++..|.+.+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777776665
No 246
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.25 E-value=1.2e+02 Score=29.95 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004320 674 EIALAEADVARLKQKVAELH 693 (761)
Q Consensus 674 eia~~E~~v~~Le~~~~~l~ 693 (761)
+|..++++|+.|++....|+
T Consensus 123 ~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 247
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.56 E-value=92 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKV 689 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~ 689 (761)
|-.++.+||.+=.-||.+|.+|..-+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34678899999999999999987643
No 248
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.99 E-value=82 Score=22.32 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQ 687 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~ 687 (761)
|-.|+.+||.+..-+|.||.+|..
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346788999999999999988865
No 249
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=24.96 E-value=3.3e+02 Score=27.11 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=40.4
Q ss_pred hhhhhhhhhhHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004320 602 ARGNAILQASLERRKQALH-----ERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (761)
Q Consensus 602 ~~~~~~lq~~~~~~k~~~~-----~~r~~Le~~V~~Lq~~L~~e~~~~~~Le~~l~ 652 (761)
-|+|+.||+.+.-|++... .+|+.-.-+++..+++++++.=+.-+......
T Consensus 128 ~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~~mv~wV~~~V~k 183 (214)
T 2cly_A 128 QRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQ 183 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998888887543 45788888899999999988777777776654
No 250
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.89 E-value=82 Score=28.62 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 004320 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSD 709 (761)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~~~~~~~~~s~~~ 709 (761)
.|..|+.|+|.-|--+|.||++|++-|-.|--+|.+.-|+...++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~ 64 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLEL 64 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999998877666654
No 251
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.16 E-value=3.5e+02 Score=23.45 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=24.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004320 613 ERRKQALHERRLALEQDVSRLQEQLQ-AERDLRA 645 (761)
Q Consensus 613 ~~~k~~~~~~r~~Le~~V~~Lq~~L~-~e~~~~~ 645 (761)
+...+...+++..+|+||..|+++++ -|.+|-.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999986 3334433
No 252
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.58 E-value=1e+02 Score=25.66 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
.++.|-.++..++.++..|+++...|..+|.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888877777774
No 253
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=23.46 E-value=4.4e+02 Score=26.62 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhHHHHH-H---HHH-Hhhhhhhhh------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 580 EELAIQRLEITKNDLRH-R---IAK-EARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (761)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~lq------~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e~~~~~~Le 648 (761)
=+..+.+.+.-+.++.. + |.. -..|+..++ ..+..+...++.+-..|.+-+..-+.+|+....++....
T Consensus 145 v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~ 224 (326)
T 3kbt_A 145 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 224 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777654 2 311 011222222 246677778888888888888888888777665555332
Q ss_pred Hhhc------CCCCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 649 VGLS------MSSGQFS--SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 649 ~~l~------~~~~~~~--~~~~~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
.+=. .....++ ++.. +..+++++.....+|.+|..++.+|..|...-.
T Consensus 225 ~~~e~~~Wl~ek~~~L~~~~~~d-~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~ 280 (326)
T 3kbt_A 225 TGAEILGLIDEKHRELPEDVGLD-ASTAESFHRVHTAFERDVHLLGVQVQQFQDVAT 280 (326)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0001111 2222 346788999999999999999999988865433
No 254
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.08 E-value=2.2e+02 Score=27.81 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 004320 626 LEQDVSRLQEQLQ 638 (761)
Q Consensus 626 Le~~V~~Lq~~L~ 638 (761)
|.+|+..|-.||+
T Consensus 25 L~~En~~L~~ql~ 37 (190)
T 4emc_A 25 LVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 255
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.89 E-value=1.7e+02 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (761)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~~~~l~~~l~ 697 (761)
+.|-.+|..++++|+.|++....|+--..
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777777777777664333
No 256
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.33 E-value=3.8e+02 Score=23.13 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004320 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (761)
Q Consensus 613 ~~~k~~~~~~r~~Le~~V~~Lq~~L~ 638 (761)
+...+...++...+|++|.-|+++++
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44566778888899999999999886
No 257
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.29 E-value=1.1e+02 Score=32.56 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 667 KTRAELEEIALAEADVARLKQKVAELHH 694 (761)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~~~~l~~ 694 (761)
+.+.|-+.|..++..|.+|+++|.+|..
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554443
No 258
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.09 E-value=2.9e+02 Score=22.87 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=11.9
Q ss_pred HHHHH----HHHHHHHHHHHHH
Q 004320 627 EQDVS----RLQEQLQAERDLR 644 (761)
Q Consensus 627 e~~V~----~Lq~~L~~e~~~~ 644 (761)
+.++. .|.++|+.|+-|.
T Consensus 34 eee~~~~~~~lek~L~~E~~LK 55 (71)
T 1s1c_X 34 EEEISNLKAAFEKNINTERTLK 55 (71)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 7777777777554
No 259
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.78 E-value=1.9e+02 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=15.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 612 LERRKQALHERRLALEQDVSRLQEQLQAE 640 (761)
Q Consensus 612 ~~~~k~~~~~~r~~Le~~V~~Lq~~L~~e 640 (761)
|..+|...++.+..|.+++..+++.+++|
T Consensus 184 LNeKK~KIR~lq~~Ll~~~~~~~~~~~~~ 212 (213)
T 1ik9_A 184 LNEKKTKIRSLHNKLLNAAQEREKDIKQE 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34455555555556666666666555443
No 260
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.62 E-value=7.1e+02 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 621 ERRLALEQDVSRLQEQLQAERD-LRAALEVGLSMSSGQFSSSRGMDSKT-RAELEEIALAEADVARLKQKVAELHHQ 695 (761)
Q Consensus 621 ~~r~~Le~~V~~Lq~~L~~e~~-~~~~Le~~l~~~~~~~~~~~~~p~~~-~~ll~eia~~E~~v~~Le~~~~~l~~~ 695 (761)
+....+++-|.+|++++++|+. +.+=.+++|.+. -+. .+||.|= .+.++..|.+++.+|+.+
T Consensus 519 ~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~-----------~~~~~~~~~~g--~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 519 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK-----------LQEQEQLLKEG--FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 3344466667777777777765 233344444311 011 2234332 456666677777777665
No 261
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=20.81 E-value=1.6e+02 Score=35.63 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=27.9
Q ss_pred ceEEEEecCCC--CceEEEEecChHHHHHHHHHHHHHHh
Q 004320 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALA 125 (761)
Q Consensus 89 ~~Fvit~~~~~--grty~LqAeSeeE~~eWI~AL~~aI~ 125 (761)
.+|.|+..... -..+.|.|.+.++++.|+..|+..+.
T Consensus 101 r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~ 139 (885)
T 3ohm_B 101 KLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAM 139 (885)
T ss_dssp TEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHh
Confidence 45666553211 13589999999999999999999886
No 262
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.48 E-value=3.5e+02 Score=22.86 Aligned_cols=62 Identities=26% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 004320 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAALE 648 (761)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~k~~~~~~r~~Le~~V~~Lq~~L~-~e~~~~~~Le 648 (761)
-|+.+=.+=.-||-.|..-=-.|+.|... ...++..|.+|.++..+|+.+.. -+..+|..|-
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e----~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQE----VQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444456555443 34567778889999998876654 3455555554
No 263
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.44 E-value=2.1e+02 Score=24.25 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004320 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (761)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~~~~l~~~l 696 (761)
|-.|++.++..|++|.-+|.-|+++-..|..+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999988877755543
Done!